xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision 5a884c48ab0c46bab83cd9bb8710f380fa6d8bcf)
1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I  "petscmat.h"  I*/
2c5d9258eSSatish Balay 
3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h>
4c6db04a5SJed Brown #include <petscblaslapack.h>
565a92638SMatthew G. Knepley #include <petscsf.h>
679bdfe76SSatish Balay 
MatDestroy_MPIBAIJ(Mat mat)766976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIBAIJ(Mat mat)
826cec326SBarry Smith {
926cec326SBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
1026cec326SBarry Smith 
1126cec326SBarry Smith   PetscFunctionBegin;
1226cec326SBarry Smith   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
1326cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->stash));
1426cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->bstash));
1526cec326SBarry Smith   PetscCall(MatDestroy(&baij->A));
1626cec326SBarry Smith   PetscCall(MatDestroy(&baij->B));
1726cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
1826cec326SBarry Smith   PetscCall(PetscHMapIDestroy(&baij->colmap));
1926cec326SBarry Smith #else
2026cec326SBarry Smith   PetscCall(PetscFree(baij->colmap));
2126cec326SBarry Smith #endif
2226cec326SBarry Smith   PetscCall(PetscFree(baij->garray));
2326cec326SBarry Smith   PetscCall(VecDestroy(&baij->lvec));
2426cec326SBarry Smith   PetscCall(VecScatterDestroy(&baij->Mvctx));
2526cec326SBarry Smith   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
2626cec326SBarry Smith   PetscCall(PetscFree(baij->barray));
2726cec326SBarry Smith   PetscCall(PetscFree2(baij->hd, baij->ht));
2826cec326SBarry Smith   PetscCall(PetscFree(baij->rangebs));
2926cec326SBarry Smith   PetscCall(PetscFree(mat->data));
3026cec326SBarry Smith 
3126cec326SBarry Smith   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
3226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
3326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
3426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocation_C", NULL));
3526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocationCSR_C", NULL));
3626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL));
3726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetHashTableFactor_C", NULL));
3826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpisbaij_C", NULL));
3926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiadj_C", NULL));
4026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiaij_C", NULL));
4126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE)
4226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_hypre_C", NULL));
4326cec326SBarry Smith #endif
4426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_is_C", NULL));
4526cec326SBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
4626cec326SBarry Smith }
4726cec326SBarry Smith 
4826cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and  MatAssemblyEnd_MPI_Hash() */
4926cec326SBarry Smith #define TYPE BAIJ
5026cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h"
5126cec326SBarry Smith #undef TYPE
5226cec326SBarry Smith 
537ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
547ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *);
557ea3e4caSstefano_zampini #endif
567ea3e4caSstefano_zampini 
MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[])5766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A, Vec v, PetscInt idx[])
58d71ae5a4SJacob Faibussowitsch {
597843d17aSBarry Smith   Mat_MPIBAIJ       *a = (Mat_MPIBAIJ *)A->data;
604e879edeSHong Zhang   PetscInt           i, *idxb = NULL, m = A->rmap->n, bs = A->cmap->bs;
61db161fc6SPierre Jolivet   PetscScalar       *vv;
624e879edeSHong Zhang   Vec                vB, vA;
63db161fc6SPierre Jolivet   const PetscScalar *va, *vb;
647843d17aSBarry Smith 
657843d17aSBarry Smith   PetscFunctionBegin;
66c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
679566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, vA, idx));
684e879edeSHong Zhang 
69db161fc6SPierre Jolivet   PetscCall(VecGetArrayRead(vA, &va));
70985db425SBarry Smith   if (idx) {
714e879edeSHong Zhang     for (i = 0; i < m; i++) {
7226fbe8dcSKarl Rupp       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
7326fbe8dcSKarl Rupp     }
74985db425SBarry Smith   }
757843d17aSBarry Smith 
76c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
779566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idxb));
789566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->B, vB, idxb));
797843d17aSBarry Smith 
809566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &vv));
819566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(vB, &vb));
824e879edeSHong Zhang   for (i = 0; i < m; i++) {
8326fbe8dcSKarl Rupp     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
844e879edeSHong Zhang       vv[i] = vb[i];
854e879edeSHong Zhang       if (idx) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs);
864e879edeSHong Zhang     } else {
874e879edeSHong Zhang       vv[i] = va[i];
889371c9d4SSatish Balay       if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > bs * a->garray[idxb[i] / bs] + (idxb[i] % bs)) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs);
8926fbe8dcSKarl Rupp     }
907843d17aSBarry Smith   }
91db161fc6SPierre Jolivet   PetscCall(VecRestoreArrayWrite(v, &vv));
92db161fc6SPierre Jolivet   PetscCall(VecRestoreArrayRead(vA, &va));
939566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(vB, &vb));
949566063dSJacob Faibussowitsch   PetscCall(PetscFree(idxb));
959566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vA));
969566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vB));
973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
987843d17aSBarry Smith }
997843d17aSBarry Smith 
MatGetRowSumAbs_MPIBAIJ(Mat A,Vec v)100c7b600bfSPierre Jolivet static PetscErrorCode MatGetRowSumAbs_MPIBAIJ(Mat A, Vec v)
101c7b600bfSPierre Jolivet {
102c7b600bfSPierre Jolivet   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
103c7b600bfSPierre Jolivet   Vec          vB, vA;
104c7b600bfSPierre Jolivet 
105c7b600bfSPierre Jolivet   PetscFunctionBegin;
106c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
107c7b600bfSPierre Jolivet   PetscCall(MatGetRowSumAbs(a->A, vA));
108c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
109c7b600bfSPierre Jolivet   PetscCall(MatGetRowSumAbs(a->B, vB));
110c7b600bfSPierre Jolivet   PetscCall(VecAXPY(vA, 1.0, vB));
111c7b600bfSPierre Jolivet   PetscCall(VecDestroy(&vB));
112c7b600bfSPierre Jolivet   PetscCall(VecCopy(vA, v));
113c7b600bfSPierre Jolivet   PetscCall(VecDestroy(&vA));
114c7b600bfSPierre Jolivet   PetscFunctionReturn(PETSC_SUCCESS);
115c7b600bfSPierre Jolivet }
116c7b600bfSPierre Jolivet 
MatStoreValues_MPIBAIJ(Mat mat)11766976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat)
118d71ae5a4SJacob Faibussowitsch {
1197fc3c18eSBarry Smith   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data;
1207fc3c18eSBarry Smith 
1217fc3c18eSBarry Smith   PetscFunctionBegin;
1229566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
1239566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
1243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1257fc3c18eSBarry Smith }
1267fc3c18eSBarry Smith 
MatRetrieveValues_MPIBAIJ(Mat mat)12766976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat)
128d71ae5a4SJacob Faibussowitsch {
1297fc3c18eSBarry Smith   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data;
1307fc3c18eSBarry Smith 
1317fc3c18eSBarry Smith   PetscFunctionBegin;
1329566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
1339566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
1343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1357fc3c18eSBarry Smith }
1367fc3c18eSBarry Smith 
137537820f0SBarry Smith /*
138537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
13957b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
140e06f6af7SJed Brown    storage of the matrix.  This is done in a non scalable way since the
14157b952d6SSatish Balay    length of colmap equals the global matrix length.
14257b952d6SSatish Balay */
MatCreateColmap_MPIBAIJ_Private(Mat mat)143d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat)
144d71ae5a4SJacob Faibussowitsch {
14557b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
14657b952d6SSatish Balay   Mat_SeqBAIJ *B    = (Mat_SeqBAIJ *)baij->B->data;
147d0f46423SBarry Smith   PetscInt     nbs = B->nbs, i, bs = mat->rmap->bs;
14857b952d6SSatish Balay 
149d64ed03dSBarry Smith   PetscFunctionBegin;
150aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
151eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(baij->nbs, &baij->colmap));
152c76ffc5fSJacob Faibussowitsch   for (i = 0; i < nbs; i++) PetscCall(PetscHMapISet(baij->colmap, baij->garray[i] + 1, i * bs + 1));
15348e59246SSatish Balay #else
1549566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(baij->Nbs + 1, &baij->colmap));
155928fc39bSSatish Balay   for (i = 0; i < nbs; i++) baij->colmap[baij->garray[i]] = i * bs + 1;
15648e59246SSatish Balay #endif
1573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
15857b952d6SSatish Balay }
15957b952d6SSatish Balay 
160d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, orow, ocol) \
161a8f51744SPierre Jolivet   do { \
16280c1aa95SSatish Balay     brow = row / bs; \
1638e3a54c0SPierre Jolivet     rp   = PetscSafePointerPlusOffset(aj, ai[brow]); \
1648e3a54c0SPierre Jolivet     ap   = PetscSafePointerPlusOffset(aa, bs2 * ai[brow]); \
1659371c9d4SSatish Balay     rmax = aimax[brow]; \
1669371c9d4SSatish Balay     nrow = ailen[brow]; \
16780c1aa95SSatish Balay     bcol = col / bs; \
1689371c9d4SSatish Balay     ridx = row % bs; \
1699371c9d4SSatish Balay     cidx = col % bs; \
1709371c9d4SSatish Balay     low  = 0; \
1719371c9d4SSatish Balay     high = nrow; \
172ab26458aSBarry Smith     while (high - low > 3) { \
173ab26458aSBarry Smith       t = (low + high) / 2; \
174ab26458aSBarry Smith       if (rp[t] > bcol) high = t; \
175ab26458aSBarry Smith       else low = t; \
176ab26458aSBarry Smith     } \
177ab26458aSBarry Smith     for (_i = low; _i < high; _i++) { \
17880c1aa95SSatish Balay       if (rp[_i] > bcol) break; \
17980c1aa95SSatish Balay       if (rp[_i] == bcol) { \
18080c1aa95SSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
181eada6651SSatish Balay         if (addv == ADD_VALUES) *bap += value; \
182eada6651SSatish Balay         else *bap = value; \
183ac7a638eSSatish Balay         goto a_noinsert; \
18480c1aa95SSatish Balay       } \
18580c1aa95SSatish Balay     } \
18689280ab3SLois Curfman McInnes     if (a->nonew == 1) goto a_noinsert; \
1875f80ce2aSJacob Faibussowitsch     PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
188fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \
18980c1aa95SSatish Balay     N = nrow++ - 1; \
19080c1aa95SSatish Balay     /* shift up all the later entries in this row */ \
1919566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
1929566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
1939566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
19480c1aa95SSatish Balay     rp[_i]                          = bcol; \
19580c1aa95SSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
196ac7a638eSSatish Balay   a_noinsert:; \
19780c1aa95SSatish Balay     ailen[brow] = nrow; \
198a8f51744SPierre Jolivet   } while (0)
19957b952d6SSatish Balay 
200d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, orow, ocol) \
201a8f51744SPierre Jolivet   do { \
202ac7a638eSSatish Balay     brow = row / bs; \
2038e3a54c0SPierre Jolivet     rp   = PetscSafePointerPlusOffset(bj, bi[brow]); \
2048e3a54c0SPierre Jolivet     ap   = PetscSafePointerPlusOffset(ba, bs2 * bi[brow]); \
2059371c9d4SSatish Balay     rmax = bimax[brow]; \
2069371c9d4SSatish Balay     nrow = bilen[brow]; \
207ac7a638eSSatish Balay     bcol = col / bs; \
2089371c9d4SSatish Balay     ridx = row % bs; \
2099371c9d4SSatish Balay     cidx = col % bs; \
2109371c9d4SSatish Balay     low  = 0; \
2119371c9d4SSatish Balay     high = nrow; \
212ac7a638eSSatish Balay     while (high - low > 3) { \
213ac7a638eSSatish Balay       t = (low + high) / 2; \
214ac7a638eSSatish Balay       if (rp[t] > bcol) high = t; \
215ac7a638eSSatish Balay       else low = t; \
216ac7a638eSSatish Balay     } \
217ac7a638eSSatish Balay     for (_i = low; _i < high; _i++) { \
218ac7a638eSSatish Balay       if (rp[_i] > bcol) break; \
219ac7a638eSSatish Balay       if (rp[_i] == bcol) { \
220ac7a638eSSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
221ac7a638eSSatish Balay         if (addv == ADD_VALUES) *bap += value; \
222ac7a638eSSatish Balay         else *bap = value; \
223ac7a638eSSatish Balay         goto b_noinsert; \
224ac7a638eSSatish Balay       } \
225ac7a638eSSatish Balay     } \
22689280ab3SLois Curfman McInnes     if (b->nonew == 1) goto b_noinsert; \
2275f80ce2aSJacob Faibussowitsch     PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column  (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
228fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \
229ac7a638eSSatish Balay     N = nrow++ - 1; \
230ac7a638eSSatish Balay     /* shift up all the later entries in this row */ \
2319566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
2329566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
2339566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
234ac7a638eSSatish Balay     rp[_i]                          = bcol; \
235ac7a638eSSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
236ac7a638eSSatish Balay   b_noinsert:; \
237ac7a638eSSatish Balay     bilen[brow] = nrow; \
238a8f51744SPierre Jolivet   } while (0)
239ac7a638eSSatish Balay 
MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)240d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
241d71ae5a4SJacob Faibussowitsch {
24257b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
24393fea6afSBarry Smith   MatScalar    value;
244ace3abfcSBarry Smith   PetscBool    roworiented = baij->roworiented;
245b24ad042SBarry Smith   PetscInt     i, j, row, col;
246d0f46423SBarry Smith   PetscInt     rstart_orig = mat->rmap->rstart;
247d0f46423SBarry Smith   PetscInt     rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart;
248d0f46423SBarry Smith   PetscInt     cend_orig = mat->cmap->rend, bs = mat->rmap->bs;
24957b952d6SSatish Balay 
250eada6651SSatish Balay   /* Some Variables required in the macro */
25180c1aa95SSatish Balay   Mat          A     = baij->A;
25257508eceSPierre Jolivet   Mat_SeqBAIJ *a     = (Mat_SeqBAIJ *)A->data;
253b24ad042SBarry Smith   PetscInt    *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
2543eda8832SBarry Smith   MatScalar   *aa = a->a;
255ac7a638eSSatish Balay 
256ac7a638eSSatish Balay   Mat          B     = baij->B;
25757508eceSPierre Jolivet   Mat_SeqBAIJ *b     = (Mat_SeqBAIJ *)B->data;
258b24ad042SBarry Smith   PetscInt    *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j;
2593eda8832SBarry Smith   MatScalar   *ba = b->a;
260ac7a638eSSatish Balay 
261b24ad042SBarry Smith   PetscInt  *rp, ii, nrow, _i, rmax, N, brow, bcol;
262b24ad042SBarry Smith   PetscInt   low, high, t, ridx, cidx, bs2 = a->bs2;
2633eda8832SBarry Smith   MatScalar *ap, *bap;
26480c1aa95SSatish Balay 
265d64ed03dSBarry Smith   PetscFunctionBegin;
26657b952d6SSatish Balay   for (i = 0; i < m; i++) {
2675ef9f2a5SBarry Smith     if (im[i] < 0) continue;
2685f80ce2aSJacob Faibussowitsch     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
26957b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
27057b952d6SSatish Balay       row = im[i] - rstart_orig;
27157b952d6SSatish Balay       for (j = 0; j < n; j++) {
27257b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {
27357b952d6SSatish Balay           col = in[j] - cstart_orig;
274db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
275db4deed7SKarl Rupp           else value = v[i + j * m];
276d40312a9SBarry Smith           MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, im[i], in[j]);
277f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
278f7d195e4SLawrence Mitchell           continue;
279f7d195e4SLawrence Mitchell         } else {
280f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
28157b952d6SSatish Balay           if (mat->was_assembled) {
28248a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
283aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
284eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col));
285bba1ac68SSatish Balay             col = col - 1;
28648e59246SSatish Balay #else
287bba1ac68SSatish Balay             col = baij->colmap[in[j] / bs] - 1;
28848e59246SSatish Balay #endif
289f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqBAIJ *)baij->B->data)->nonew) {
2909566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
2918295de27SSatish Balay               col = in[j];
2929bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
2939bf004c3SSatish Balay               B     = baij->B;
29457508eceSPierre Jolivet               b     = (Mat_SeqBAIJ *)B->data;
2959371c9d4SSatish Balay               bimax = b->imax;
2969371c9d4SSatish Balay               bi    = b->i;
2979371c9d4SSatish Balay               bilen = b->ilen;
2989371c9d4SSatish Balay               bj    = b->j;
2999bf004c3SSatish Balay               ba    = b->a;
300f7d195e4SLawrence Mitchell             } else {
301f7d195e4SLawrence Mitchell               PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
302f7d195e4SLawrence Mitchell               col += in[j] % bs;
303f7d195e4SLawrence Mitchell             }
3048295de27SSatish Balay           } else col = in[j];
305db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
306db4deed7SKarl Rupp           else value = v[i + j * m];
307d40312a9SBarry Smith           MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, im[i], in[j]);
3089566063dSJacob Faibussowitsch           /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */
30957b952d6SSatish Balay         }
31057b952d6SSatish Balay       }
311d64ed03dSBarry Smith     } else {
3125f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
31390f02eecSBarry Smith       if (!baij->donotstash) {
3145080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
315ff2fd236SBarry Smith         if (roworiented) {
3169566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE));
317ff2fd236SBarry Smith         } else {
3189566063dSJacob Faibussowitsch           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE));
31957b952d6SSatish Balay         }
32057b952d6SSatish Balay       }
32157b952d6SSatish Balay     }
32290f02eecSBarry Smith   }
3233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
32457b952d6SSatish Balay }
32557b952d6SSatish Balay 
MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)326d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol)
327d71ae5a4SJacob Faibussowitsch {
328880c6e6aSBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ *)A->data;
3298ab52850SBarry Smith   PetscInt          *rp, low, high, t, ii, jj, nrow, i, rmax, N;
330880c6e6aSBarry Smith   PetscInt          *imax = a->imax, *ai = a->i, *ailen = a->ilen;
3318ab52850SBarry Smith   PetscInt          *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs;
332880c6e6aSBarry Smith   PetscBool          roworiented = a->roworiented;
333880c6e6aSBarry Smith   const PetscScalar *value       = v;
334880c6e6aSBarry Smith   MatScalar         *ap, *aa = a->a, *bap;
335880c6e6aSBarry Smith 
336880c6e6aSBarry Smith   PetscFunctionBegin;
337880c6e6aSBarry Smith   rp    = aj + ai[row];
338880c6e6aSBarry Smith   ap    = aa + bs2 * ai[row];
339880c6e6aSBarry Smith   rmax  = imax[row];
340880c6e6aSBarry Smith   nrow  = ailen[row];
3418ab52850SBarry Smith   value = v;
3428ab52850SBarry Smith   low   = 0;
3438ab52850SBarry Smith   high  = nrow;
344880c6e6aSBarry Smith   while (high - low > 7) {
345880c6e6aSBarry Smith     t = (low + high) / 2;
346880c6e6aSBarry Smith     if (rp[t] > col) high = t;
347880c6e6aSBarry Smith     else low = t;
348880c6e6aSBarry Smith   }
349880c6e6aSBarry Smith   for (i = low; i < high; i++) {
350880c6e6aSBarry Smith     if (rp[i] > col) break;
351880c6e6aSBarry Smith     if (rp[i] == col) {
352880c6e6aSBarry Smith       bap = ap + bs2 * i;
353880c6e6aSBarry Smith       if (roworiented) {
354880c6e6aSBarry Smith         if (is == ADD_VALUES) {
3558ab52850SBarry Smith           for (ii = 0; ii < bs; ii++) {
356ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++;
357880c6e6aSBarry Smith           }
358880c6e6aSBarry Smith         } else {
3598ab52850SBarry Smith           for (ii = 0; ii < bs; ii++) {
360ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
361880c6e6aSBarry Smith           }
362880c6e6aSBarry Smith         }
363880c6e6aSBarry Smith       } else {
364880c6e6aSBarry Smith         if (is == ADD_VALUES) {
3658ab52850SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
366ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] += value[jj];
367880c6e6aSBarry Smith             bap += bs;
368880c6e6aSBarry Smith           }
369880c6e6aSBarry Smith         } else {
3708ab52850SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
371ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] = value[jj];
372880c6e6aSBarry Smith             bap += bs;
373880c6e6aSBarry Smith           }
374880c6e6aSBarry Smith         }
375880c6e6aSBarry Smith       }
376880c6e6aSBarry Smith       goto noinsert2;
377880c6e6aSBarry Smith     }
378880c6e6aSBarry Smith   }
379880c6e6aSBarry Smith   if (nonew == 1) goto noinsert2;
3805f80ce2aSJacob Faibussowitsch   PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
381880c6e6aSBarry Smith   MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
3829371c9d4SSatish Balay   N = nrow++ - 1;
3839371c9d4SSatish Balay   high++;
384880c6e6aSBarry Smith   /* shift up all the later entries in this row */
3859566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
3869566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
387880c6e6aSBarry Smith   rp[i] = col;
388880c6e6aSBarry Smith   bap   = ap + bs2 * i;
389880c6e6aSBarry Smith   if (roworiented) {
3908ab52850SBarry Smith     for (ii = 0; ii < bs; ii++) {
391ad540459SPierre Jolivet       for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
392880c6e6aSBarry Smith     }
393880c6e6aSBarry Smith   } else {
3948ab52850SBarry Smith     for (ii = 0; ii < bs; ii++) {
395ad540459SPierre Jolivet       for (jj = 0; jj < bs; jj++) *bap++ = *value++;
396880c6e6aSBarry Smith     }
397880c6e6aSBarry Smith   }
398880c6e6aSBarry Smith noinsert2:;
399880c6e6aSBarry Smith   ailen[row] = nrow;
4003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
401880c6e6aSBarry Smith }
402880c6e6aSBarry Smith 
4038ab52850SBarry Smith /*
4048ab52850SBarry Smith     This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed
4058ab52850SBarry Smith     by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine
4068ab52850SBarry Smith */
MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)40766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
408d71ae5a4SJacob Faibussowitsch {
409ab26458aSBarry Smith   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ *)mat->data;
410dd6ea824SBarry Smith   const PetscScalar *value;
411f15d580aSBarry Smith   MatScalar         *barray      = baij->barray;
412ace3abfcSBarry Smith   PetscBool          roworiented = baij->roworiented;
413899cda47SBarry Smith   PetscInt           i, j, ii, jj, row, col, rstart = baij->rstartbs;
414899cda47SBarry Smith   PetscInt           rend = baij->rendbs, cstart = baij->cstartbs, stepval;
415d0f46423SBarry Smith   PetscInt           cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2;
416ab26458aSBarry Smith 
417b16ae2b1SBarry Smith   PetscFunctionBegin;
41830793edcSSatish Balay   if (!barray) {
4199566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2, &barray));
42082502324SSatish Balay     baij->barray = barray;
42130793edcSSatish Balay   }
42230793edcSSatish Balay 
42326fbe8dcSKarl Rupp   if (roworiented) stepval = (n - 1) * bs;
42426fbe8dcSKarl Rupp   else stepval = (m - 1) * bs;
42526fbe8dcSKarl Rupp 
426ab26458aSBarry Smith   for (i = 0; i < m; i++) {
4275ef9f2a5SBarry Smith     if (im[i] < 0) continue;
4286bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
429ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
430ab26458aSBarry Smith       row = im[i] - rstart;
431ab26458aSBarry Smith       for (j = 0; j < n; j++) {
43215b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
43315b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
434f15d580aSBarry Smith           barray = (MatScalar *)v + i * bs2;
43515b57d14SSatish Balay         } else if ((!roworiented) && (m == 1)) {
436f15d580aSBarry Smith           barray = (MatScalar *)v + j * bs2;
43715b57d14SSatish Balay         } else { /* Here a copy is required */
438ab26458aSBarry Smith           if (roworiented) {
43953ef36baSBarry Smith             value = v + (i * (stepval + bs) + j) * bs;
440ab26458aSBarry Smith           } else {
44153ef36baSBarry Smith             value = v + (j * (stepval + bs) + i) * bs;
442abef11f7SSatish Balay           }
44353ef36baSBarry Smith           for (ii = 0; ii < bs; ii++, value += bs + stepval) {
44426fbe8dcSKarl Rupp             for (jj = 0; jj < bs; jj++) barray[jj] = value[jj];
44553ef36baSBarry Smith             barray += bs;
44647513183SBarry Smith           }
44730793edcSSatish Balay           barray -= bs2;
44815b57d14SSatish Balay         }
449abef11f7SSatish Balay 
450abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend) {
451abef11f7SSatish Balay           col = in[j] - cstart;
4529566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j]));
453f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
454f7d195e4SLawrence Mitchell           continue;
455f7d195e4SLawrence Mitchell         } else {
456f7d195e4SLawrence Mitchell           PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1);
457ab26458aSBarry Smith           if (mat->was_assembled) {
45848a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
459a5eb4965SSatish Balay 
460aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
461eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col));
462b758ae8cSBarry Smith             col = col < 1 ? -1 : (col - 1) / bs;
46348e59246SSatish Balay #else
464b758ae8cSBarry Smith             col = baij->colmap[in[j]] < 1 ? -1 : (baij->colmap[in[j]] - 1) / bs;
46548e59246SSatish Balay #endif
466f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqBAIJ *)baij->B->data)->nonew) {
4679566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
468ab26458aSBarry Smith               col = in[j];
4695f80ce2aSJacob Faibussowitsch             } else PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new blocked indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
470db4deed7SKarl Rupp           } else col = in[j];
4719566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j]));
472ab26458aSBarry Smith         }
473ab26458aSBarry Smith       }
474d64ed03dSBarry Smith     } else {
4755f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
476ab26458aSBarry Smith       if (!baij->donotstash) {
477ff2fd236SBarry Smith         if (roworiented) {
4789566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
479ff2fd236SBarry Smith         } else {
4809566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
481ff2fd236SBarry Smith         }
482abef11f7SSatish Balay       }
483ab26458aSBarry Smith     }
484ab26458aSBarry Smith   }
4853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
486ab26458aSBarry Smith }
4876fa18ffdSBarry Smith 
4880bdbc534SSatish Balay #define HASH_KEY             0.6180339887
489b24ad042SBarry Smith #define HASH(size, key, tmp) (tmp = (key) * HASH_KEY, (PetscInt)((size) * (tmp - (PetscInt)tmp)))
490b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
491b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)49266976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
493d71ae5a4SJacob Faibussowitsch {
4940bdbc534SSatish Balay   Mat_MPIBAIJ *baij        = (Mat_MPIBAIJ *)mat->data;
495ace3abfcSBarry Smith   PetscBool    roworiented = baij->roworiented;
496b24ad042SBarry Smith   PetscInt     i, j, row, col;
497d0f46423SBarry Smith   PetscInt     rstart_orig = mat->rmap->rstart;
498d0f46423SBarry Smith   PetscInt     rend_orig = mat->rmap->rend, Nbs = baij->Nbs;
499d0f46423SBarry Smith   PetscInt     h1, key, size = baij->ht_size, bs = mat->rmap->bs, *HT = baij->ht, idx;
500329f5518SBarry Smith   PetscReal    tmp;
5013eda8832SBarry Smith   MatScalar  **HD       = baij->hd, value;
502b24ad042SBarry Smith   PetscInt     total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct;
5030bdbc534SSatish Balay 
5040bdbc534SSatish Balay   PetscFunctionBegin;
5050bdbc534SSatish Balay   for (i = 0; i < m; i++) {
50676bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
5075f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row");
5085f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
50976bd3646SJed Brown     }
5100bdbc534SSatish Balay     row = im[i];
511c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
5120bdbc534SSatish Balay       for (j = 0; j < n; j++) {
5130bdbc534SSatish Balay         col = in[j];
514db4deed7SKarl Rupp         if (roworiented) value = v[i * n + j];
515db4deed7SKarl Rupp         else value = v[i + j * m];
516b24ad042SBarry Smith         /* Look up PetscInto the Hash Table */
517c2760754SSatish Balay         key = (row / bs) * Nbs + (col / bs) + 1;
518c2760754SSatish Balay         h1  = HASH(size, key, tmp);
5190bdbc534SSatish Balay 
520c2760754SSatish Balay         idx = h1;
52176bd3646SJed Brown         if (PetscDefined(USE_DEBUG)) {
522187ce0cbSSatish Balay           insert_ct++;
523187ce0cbSSatish Balay           total_ct++;
524187ce0cbSSatish Balay           if (HT[idx] != key) {
525fbccb6d4SPierre Jolivet             for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++);
526187ce0cbSSatish Balay             if (idx == size) {
527fbccb6d4SPierre Jolivet               for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++);
5285f80ce2aSJacob Faibussowitsch               PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
529187ce0cbSSatish Balay             }
530187ce0cbSSatish Balay           }
53176bd3646SJed Brown         } else if (HT[idx] != key) {
532fbccb6d4SPierre Jolivet           for (idx = h1; (idx < size) && (HT[idx] != key); idx++);
533c2760754SSatish Balay           if (idx == size) {
534fbccb6d4SPierre Jolivet             for (idx = 0; (idx < h1) && (HT[idx] != key); idx++);
5355f80ce2aSJacob Faibussowitsch             PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
536c2760754SSatish Balay           }
537c2760754SSatish Balay         }
538c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
539c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx] + (col % bs) * bs + (row % bs)) += value;
540c2760754SSatish Balay         else *(HD[idx] + (col % bs) * bs + (row % bs)) = value;
5410bdbc534SSatish Balay       }
54226fbe8dcSKarl Rupp     } else if (!baij->donotstash) {
543ff2fd236SBarry Smith       if (roworiented) {
5449566063dSJacob Faibussowitsch         PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE));
545ff2fd236SBarry Smith       } else {
5469566063dSJacob Faibussowitsch         PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE));
5470bdbc534SSatish Balay       }
5480bdbc534SSatish Balay     }
5490bdbc534SSatish Balay   }
55076bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
551abf3b562SBarry Smith     baij->ht_total_ct += total_ct;
552abf3b562SBarry Smith     baij->ht_insert_ct += insert_ct;
55376bd3646SJed Brown   }
5543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5550bdbc534SSatish Balay }
5560bdbc534SSatish Balay 
MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)55766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
558d71ae5a4SJacob Faibussowitsch {
5590bdbc534SSatish Balay   Mat_MPIBAIJ       *baij        = (Mat_MPIBAIJ *)mat->data;
560ace3abfcSBarry Smith   PetscBool          roworiented = baij->roworiented;
561b24ad042SBarry Smith   PetscInt           i, j, ii, jj, row, col;
562899cda47SBarry Smith   PetscInt           rstart = baij->rstartbs;
563d0f46423SBarry Smith   PetscInt           rend = mat->rmap->rend, stepval, bs = mat->rmap->bs, bs2 = baij->bs2, nbs2 = n * bs2;
564b24ad042SBarry Smith   PetscInt           h1, key, size = baij->ht_size, idx, *HT = baij->ht, Nbs = baij->Nbs;
565329f5518SBarry Smith   PetscReal          tmp;
5663eda8832SBarry Smith   MatScalar        **HD = baij->hd, *baij_a;
567dd6ea824SBarry Smith   const PetscScalar *v_t, *value;
568b24ad042SBarry Smith   PetscInt           total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct;
5690bdbc534SSatish Balay 
570d0a41580SSatish Balay   PetscFunctionBegin;
57126fbe8dcSKarl Rupp   if (roworiented) stepval = (n - 1) * bs;
57226fbe8dcSKarl Rupp   else stepval = (m - 1) * bs;
57326fbe8dcSKarl Rupp 
5740bdbc534SSatish Balay   for (i = 0; i < m; i++) {
57576bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
5765f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row: %" PetscInt_FMT, im[i]);
5775f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
57876bd3646SJed Brown     }
5790bdbc534SSatish Balay     row = im[i];
580ab715e2cSSatish Balay     v_t = v + i * nbs2;
581c2760754SSatish Balay     if (row >= rstart && row < rend) {
5820bdbc534SSatish Balay       for (j = 0; j < n; j++) {
5830bdbc534SSatish Balay         col = in[j];
5840bdbc534SSatish Balay 
5850bdbc534SSatish Balay         /* Look up into the Hash Table */
586c2760754SSatish Balay         key = row * Nbs + col + 1;
587c2760754SSatish Balay         h1  = HASH(size, key, tmp);
5880bdbc534SSatish Balay 
589c2760754SSatish Balay         idx = h1;
59076bd3646SJed Brown         if (PetscDefined(USE_DEBUG)) {
591187ce0cbSSatish Balay           total_ct++;
592187ce0cbSSatish Balay           insert_ct++;
593187ce0cbSSatish Balay           if (HT[idx] != key) {
594fbccb6d4SPierre Jolivet             for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++);
595187ce0cbSSatish Balay             if (idx == size) {
596fbccb6d4SPierre Jolivet               for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++);
5975f80ce2aSJacob Faibussowitsch               PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
598187ce0cbSSatish Balay             }
599187ce0cbSSatish Balay           }
60076bd3646SJed Brown         } else if (HT[idx] != key) {
601fbccb6d4SPierre Jolivet           for (idx = h1; (idx < size) && (HT[idx] != key); idx++);
602c2760754SSatish Balay           if (idx == size) {
603fbccb6d4SPierre Jolivet             for (idx = 0; (idx < h1) && (HT[idx] != key); idx++);
6045f80ce2aSJacob Faibussowitsch             PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
605c2760754SSatish Balay           }
606c2760754SSatish Balay         }
607c2760754SSatish Balay         baij_a = HD[idx];
6080bdbc534SSatish Balay         if (roworiented) {
609c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
610187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
611187ce0cbSSatish Balay           value = v_t;
612187ce0cbSSatish Balay           v_t += bs;
613fef45726SSatish Balay           if (addv == ADD_VALUES) {
614c2760754SSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval) {
615ad540459SPierre Jolivet               for (jj = ii; jj < bs2; jj += bs) baij_a[jj] += *value++;
616b4cc0f5aSSatish Balay             }
617fef45726SSatish Balay           } else {
618c2760754SSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval) {
619ad540459SPierre Jolivet               for (jj = ii; jj < bs2; jj += bs) baij_a[jj] = *value++;
620fef45726SSatish Balay             }
621fef45726SSatish Balay           }
6220bdbc534SSatish Balay         } else {
6230bdbc534SSatish Balay           value = v + j * (stepval + bs) * bs + i * bs;
624fef45726SSatish Balay           if (addv == ADD_VALUES) {
625b4cc0f5aSSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) {
626ad540459SPierre Jolivet               for (jj = 0; jj < bs; jj++) baij_a[jj] += *value++;
627fef45726SSatish Balay             }
628fef45726SSatish Balay           } else {
629fef45726SSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) {
630ad540459SPierre Jolivet               for (jj = 0; jj < bs; jj++) baij_a[jj] = *value++;
631b4cc0f5aSSatish Balay             }
6320bdbc534SSatish Balay           }
6330bdbc534SSatish Balay         }
6340bdbc534SSatish Balay       }
6350bdbc534SSatish Balay     } else {
6360bdbc534SSatish Balay       if (!baij->donotstash) {
6370bdbc534SSatish Balay         if (roworiented) {
6389566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6390bdbc534SSatish Balay         } else {
6409566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6410bdbc534SSatish Balay         }
6420bdbc534SSatish Balay       }
6430bdbc534SSatish Balay     }
6440bdbc534SSatish Balay   }
64576bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
646abf3b562SBarry Smith     baij->ht_total_ct += total_ct;
647abf3b562SBarry Smith     baij->ht_insert_ct += insert_ct;
64876bd3646SJed Brown   }
6493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6500bdbc534SSatish Balay }
651133cdb44SSatish Balay 
MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])65266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
653d71ae5a4SJacob Faibussowitsch {
654d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
655d0f46423SBarry Smith   PetscInt     bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend;
656d0f46423SBarry Smith   PetscInt     bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data;
657d6de1c52SSatish Balay 
658133cdb44SSatish Balay   PetscFunctionBegin;
659d6de1c52SSatish Balay   for (i = 0; i < m; i++) {
66054c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
66154c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
662966bd95aSPierre Jolivet     PetscCheck(idxm[i] >= bsrstart && idxm[i] < bsrend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported");
663d6de1c52SSatish Balay     row = idxm[i] - bsrstart;
664d6de1c52SSatish Balay     for (j = 0; j < n; j++) {
66554c59aa7SJacob Faibussowitsch       if (idxn[j] < 0) continue; /* negative column */
66654c59aa7SJacob Faibussowitsch       PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
667d6de1c52SSatish Balay       if (idxn[j] >= bscstart && idxn[j] < bscend) {
668d6de1c52SSatish Balay         col = idxn[j] - bscstart;
6699566063dSJacob Faibussowitsch         PetscCall(MatGetValues_SeqBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j));
670d64ed03dSBarry Smith       } else {
67148a46eb9SPierre Jolivet         if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
672aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
673eec179cfSJacob Faibussowitsch         PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data));
674fa46199cSSatish Balay         data--;
67548e59246SSatish Balay #else
67648e59246SSatish Balay         data = baij->colmap[idxn[j] / bs] - 1;
67748e59246SSatish Balay #endif
678966bd95aSPierre Jolivet         if (data < 0 || baij->garray[data / bs] != idxn[j] / bs) *(v + i * n + j) = 0.0;
679d9d09a02SSatish Balay         else {
68048e59246SSatish Balay           col = data + idxn[j] % bs;
6819566063dSJacob Faibussowitsch           PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j));
682d6de1c52SSatish Balay         }
683d6de1c52SSatish Balay       }
684d6de1c52SSatish Balay     }
685d6de1c52SSatish Balay   }
6863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
687d6de1c52SSatish Balay }
688d6de1c52SSatish Balay 
MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal * nrm)68966976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIBAIJ(Mat mat, NormType type, PetscReal *nrm)
690d71ae5a4SJacob Faibussowitsch {
691d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
692d6de1c52SSatish Balay   Mat_SeqBAIJ *amat = (Mat_SeqBAIJ *)baij->A->data, *bmat = (Mat_SeqBAIJ *)baij->B->data;
693d0f46423SBarry Smith   PetscInt     i, j, bs2 = baij->bs2, bs = baij->A->rmap->bs, nz, row, col;
694329f5518SBarry Smith   PetscReal    sum = 0.0;
6953eda8832SBarry Smith   MatScalar   *v;
696d6de1c52SSatish Balay 
697d64ed03dSBarry Smith   PetscFunctionBegin;
698d6de1c52SSatish Balay   if (baij->size == 1) {
6999566063dSJacob Faibussowitsch     PetscCall(MatNorm(baij->A, type, nrm));
700d6de1c52SSatish Balay   } else {
701d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
702d6de1c52SSatish Balay       v  = amat->a;
7038a62d963SHong Zhang       nz = amat->nz * bs2;
7048a62d963SHong Zhang       for (i = 0; i < nz; i++) {
7059371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
7069371c9d4SSatish Balay         v++;
707d6de1c52SSatish Balay       }
708d6de1c52SSatish Balay       v  = bmat->a;
7098a62d963SHong Zhang       nz = bmat->nz * bs2;
7108a62d963SHong Zhang       for (i = 0; i < nz; i++) {
7119371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
7129371c9d4SSatish Balay         v++;
713d6de1c52SSatish Balay       }
714462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7158f1a2a5eSBarry Smith       *nrm = PetscSqrtReal(*nrm);
7168a62d963SHong Zhang     } else if (type == NORM_1) { /* max column sum */
7178ba8550cSPierre Jolivet       Vec          col, bcol;
71875dbe01dSPierre Jolivet       PetscScalar *array;
71975dbe01dSPierre Jolivet       PetscInt    *jj, *garray = baij->garray;
7206497c311SBarry Smith 
72175dbe01dSPierre Jolivet       PetscCall(MatCreateVecs(mat, &col, NULL));
72275dbe01dSPierre Jolivet       PetscCall(VecSet(col, 0.0));
72375dbe01dSPierre Jolivet       PetscCall(VecGetArrayWrite(col, &array));
7249371c9d4SSatish Balay       v  = amat->a;
7259371c9d4SSatish Balay       jj = amat->j;
7268a62d963SHong Zhang       for (i = 0; i < amat->nz; i++) {
7278a62d963SHong Zhang         for (j = 0; j < bs; j++) {
72875dbe01dSPierre Jolivet           PetscInt col = bs * *jj + j; /* column index */
72975dbe01dSPierre Jolivet 
73075dbe01dSPierre Jolivet           for (row = 0; row < bs; row++) array[col] += PetscAbsScalar(*v++);
7318a62d963SHong Zhang         }
7328a62d963SHong Zhang         jj++;
7338a62d963SHong Zhang       }
73475dbe01dSPierre Jolivet       PetscCall(VecRestoreArrayWrite(col, &array));
7358ba8550cSPierre Jolivet       PetscCall(MatCreateVecs(baij->B, &bcol, NULL));
7368ba8550cSPierre Jolivet       PetscCall(VecSet(bcol, 0.0));
7378ba8550cSPierre Jolivet       PetscCall(VecGetArrayWrite(bcol, &array));
7389371c9d4SSatish Balay       v  = bmat->a;
7399371c9d4SSatish Balay       jj = bmat->j;
7408a62d963SHong Zhang       for (i = 0; i < bmat->nz; i++) {
7418a62d963SHong Zhang         for (j = 0; j < bs; j++) {
7428ba8550cSPierre Jolivet           PetscInt col = bs * *jj + j; /* column index */
74375dbe01dSPierre Jolivet 
7448ba8550cSPierre Jolivet           for (row = 0; row < bs; row++) array[col] += PetscAbsScalar(*v++);
7458a62d963SHong Zhang         }
7468a62d963SHong Zhang         jj++;
7478a62d963SHong Zhang       }
7488ba8550cSPierre Jolivet       PetscCall(VecSetValuesBlocked(col, bmat->nbs, garray, array, ADD_VALUES));
7498ba8550cSPierre Jolivet       PetscCall(VecRestoreArrayWrite(bcol, &array));
7508ba8550cSPierre Jolivet       PetscCall(VecDestroy(&bcol));
75175dbe01dSPierre Jolivet       PetscCall(VecAssemblyBegin(col));
75275dbe01dSPierre Jolivet       PetscCall(VecAssemblyEnd(col));
75375dbe01dSPierre Jolivet       PetscCall(VecNorm(col, NORM_INFINITY, nrm));
75475dbe01dSPierre Jolivet       PetscCall(VecDestroy(&col));
7558a62d963SHong Zhang     } else if (type == NORM_INFINITY) { /* max row sum */
756577dd1f9SKris Buschelman       PetscReal *sums;
7579566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(bs, &sums));
7588a62d963SHong Zhang       sum = 0.0;
7598a62d963SHong Zhang       for (j = 0; j < amat->mbs; j++) {
7608a62d963SHong Zhang         for (row = 0; row < bs; row++) sums[row] = 0.0;
7618a62d963SHong Zhang         v  = amat->a + bs2 * amat->i[j];
7628a62d963SHong Zhang         nz = amat->i[j + 1] - amat->i[j];
7638a62d963SHong Zhang         for (i = 0; i < nz; i++) {
7648a62d963SHong Zhang           for (col = 0; col < bs; col++) {
7658a62d963SHong Zhang             for (row = 0; row < bs; row++) {
7669371c9d4SSatish Balay               sums[row] += PetscAbsScalar(*v);
7679371c9d4SSatish Balay               v++;
7688a62d963SHong Zhang             }
7698a62d963SHong Zhang           }
7708a62d963SHong Zhang         }
7718a62d963SHong Zhang         v  = bmat->a + bs2 * bmat->i[j];
7728a62d963SHong Zhang         nz = bmat->i[j + 1] - bmat->i[j];
7738a62d963SHong Zhang         for (i = 0; i < nz; i++) {
7748a62d963SHong Zhang           for (col = 0; col < bs; col++) {
7758a62d963SHong Zhang             for (row = 0; row < bs; row++) {
7769371c9d4SSatish Balay               sums[row] += PetscAbsScalar(*v);
7779371c9d4SSatish Balay               v++;
7788a62d963SHong Zhang             }
7798a62d963SHong Zhang           }
7808a62d963SHong Zhang         }
7818a62d963SHong Zhang         for (row = 0; row < bs; row++) {
7828a62d963SHong Zhang           if (sums[row] > sum) sum = sums[row];
7838a62d963SHong Zhang         }
7848a62d963SHong Zhang       }
785462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat)));
7869566063dSJacob Faibussowitsch       PetscCall(PetscFree(sums));
787ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for this norm yet");
788d64ed03dSBarry Smith   }
7893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
790d6de1c52SSatish Balay }
79157b952d6SSatish Balay 
792fef45726SSatish Balay /*
793fef45726SSatish Balay   Creates the hash table, and sets the table
794fef45726SSatish Balay   This table is created only once.
79546091a0eSPierre Jolivet   If new entries need to be added to the matrix
796fef45726SSatish Balay   then the hash table has to be destroyed and
797fef45726SSatish Balay   recreated.
798fef45726SSatish Balay */
MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor)79966976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat, PetscReal factor)
800d71ae5a4SJacob Faibussowitsch {
801596b8d2eSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
802596b8d2eSBarry Smith   Mat          A = baij->A, B = baij->B;
803596b8d2eSBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data, *b = (Mat_SeqBAIJ *)B->data;
804b24ad042SBarry Smith   PetscInt     i, j, k, nz = a->nz + b->nz, h1, *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j;
805fca92195SBarry Smith   PetscInt     ht_size, bs2 = baij->bs2, rstart = baij->rstartbs;
806899cda47SBarry Smith   PetscInt     cstart = baij->cstartbs, *garray = baij->garray, row, col, Nbs = baij->Nbs;
807b24ad042SBarry Smith   PetscInt    *HT, key;
8083eda8832SBarry Smith   MatScalar  **HD;
809329f5518SBarry Smith   PetscReal    tmp;
8106cf91177SBarry Smith #if defined(PETSC_USE_INFO)
811b24ad042SBarry Smith   PetscInt ct = 0, max = 0;
8124a15367fSSatish Balay #endif
813fef45726SSatish Balay 
814d64ed03dSBarry Smith   PetscFunctionBegin;
8153ba16761SJacob Faibussowitsch   if (baij->ht) PetscFunctionReturn(PETSC_SUCCESS);
816fef45726SSatish Balay 
817fca92195SBarry Smith   baij->ht_size = (PetscInt)(factor * nz);
818fca92195SBarry Smith   ht_size       = baij->ht_size;
8190bdbc534SSatish Balay 
820fef45726SSatish Balay   /* Allocate Memory for Hash Table */
8219566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(ht_size, &baij->hd, ht_size, &baij->ht));
822b9e4cc15SSatish Balay   HD = baij->hd;
823a07cd24cSSatish Balay   HT = baij->ht;
824b9e4cc15SSatish Balay 
825596b8d2eSBarry Smith   /* Loop Over A */
8260bdbc534SSatish Balay   for (i = 0; i < a->mbs; i++) {
827596b8d2eSBarry Smith     for (j = ai[i]; j < ai[i + 1]; j++) {
8280bdbc534SSatish Balay       row = i + rstart;
8290bdbc534SSatish Balay       col = aj[j] + cstart;
830596b8d2eSBarry Smith 
831187ce0cbSSatish Balay       key = row * Nbs + col + 1;
832fca92195SBarry Smith       h1  = HASH(ht_size, key, tmp);
833fca92195SBarry Smith       for (k = 0; k < ht_size; k++) {
834fca92195SBarry Smith         if (!HT[(h1 + k) % ht_size]) {
835fca92195SBarry Smith           HT[(h1 + k) % ht_size] = key;
836fca92195SBarry Smith           HD[(h1 + k) % ht_size] = a->a + j * bs2;
837596b8d2eSBarry Smith           break;
8386cf91177SBarry Smith #if defined(PETSC_USE_INFO)
839187ce0cbSSatish Balay         } else {
840187ce0cbSSatish Balay           ct++;
841187ce0cbSSatish Balay #endif
842596b8d2eSBarry Smith         }
843187ce0cbSSatish Balay       }
8446cf91177SBarry Smith #if defined(PETSC_USE_INFO)
845187ce0cbSSatish Balay       if (k > max) max = k;
846187ce0cbSSatish Balay #endif
847596b8d2eSBarry Smith     }
848596b8d2eSBarry Smith   }
849596b8d2eSBarry Smith   /* Loop Over B */
8500bdbc534SSatish Balay   for (i = 0; i < b->mbs; i++) {
851596b8d2eSBarry Smith     for (j = bi[i]; j < bi[i + 1]; j++) {
8520bdbc534SSatish Balay       row = i + rstart;
8530bdbc534SSatish Balay       col = garray[bj[j]];
854187ce0cbSSatish Balay       key = row * Nbs + col + 1;
855fca92195SBarry Smith       h1  = HASH(ht_size, key, tmp);
856fca92195SBarry Smith       for (k = 0; k < ht_size; k++) {
857fca92195SBarry Smith         if (!HT[(h1 + k) % ht_size]) {
858fca92195SBarry Smith           HT[(h1 + k) % ht_size] = key;
859fca92195SBarry Smith           HD[(h1 + k) % ht_size] = b->a + j * bs2;
860596b8d2eSBarry Smith           break;
8616cf91177SBarry Smith #if defined(PETSC_USE_INFO)
862187ce0cbSSatish Balay         } else {
863187ce0cbSSatish Balay           ct++;
864187ce0cbSSatish Balay #endif
865596b8d2eSBarry Smith         }
866187ce0cbSSatish Balay       }
8676cf91177SBarry Smith #if defined(PETSC_USE_INFO)
868187ce0cbSSatish Balay       if (k > max) max = k;
869187ce0cbSSatish Balay #endif
870596b8d2eSBarry Smith     }
871596b8d2eSBarry Smith   }
872596b8d2eSBarry Smith 
873596b8d2eSBarry Smith   /* Print Summary */
8746cf91177SBarry Smith #if defined(PETSC_USE_INFO)
875fca92195SBarry Smith   for (i = 0, j = 0; i < ht_size; i++) {
87626fbe8dcSKarl Rupp     if (HT[i]) j++;
877c38d4ed2SBarry Smith   }
878835f2295SStefano Zampini   PetscCall(PetscInfo(mat, "Average Search = %5.2g,max search = %" PetscInt_FMT "\n", (!j) ? 0.0 : (double)(((PetscReal)(ct + j)) / j), max));
879187ce0cbSSatish Balay #endif
8803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
881596b8d2eSBarry Smith }
88257b952d6SSatish Balay 
MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode)88366976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat, MatAssemblyType mode)
884d71ae5a4SJacob Faibussowitsch {
885bbb85fb3SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
886b24ad042SBarry Smith   PetscInt     nstash, reallocs;
887bbb85fb3SSatish Balay 
888bbb85fb3SSatish Balay   PetscFunctionBegin;
8893ba16761SJacob Faibussowitsch   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
890bbb85fb3SSatish Balay 
8919566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
8929566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs));
8939566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
8949566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
8959566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->bstash, &nstash, &reallocs));
8969566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
8973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
898bbb85fb3SSatish Balay }
899bbb85fb3SSatish Balay 
MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode)90066976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat, MatAssemblyType mode)
901d71ae5a4SJacob Faibussowitsch {
902bbb85fb3SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
90391c97fd4SSatish Balay   Mat_SeqBAIJ *a    = (Mat_SeqBAIJ *)baij->A->data;
904b24ad042SBarry Smith   PetscInt     i, j, rstart, ncols, flg, bs2 = baij->bs2;
905e44c0bd4SBarry Smith   PetscInt    *row, *col;
906c0edf612SJunchao Zhang   PetscBool    r1, r2, r3, all_assembled;
9073eda8832SBarry Smith   MatScalar   *val;
908b24ad042SBarry Smith   PetscMPIInt  n;
909bbb85fb3SSatish Balay 
910bbb85fb3SSatish Balay   PetscFunctionBegin;
9115fd66863SKarl Rupp   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
9124cb17eb5SBarry Smith   if (!baij->donotstash && !mat->nooffprocentries) {
913a2d1c673SSatish Balay     while (1) {
9149566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
915a2d1c673SSatish Balay       if (!flg) break;
916a2d1c673SSatish Balay 
917bbb85fb3SSatish Balay       for (i = 0; i < n;) {
918bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
91926fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
92026fbe8dcSKarl Rupp           if (row[j] != rstart) break;
92126fbe8dcSKarl Rupp         }
922bbb85fb3SSatish Balay         if (j < n) ncols = j - i;
923bbb85fb3SSatish Balay         else ncols = n - i;
924bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
9259566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
926bbb85fb3SSatish Balay         i = j;
927bbb85fb3SSatish Balay       }
928bbb85fb3SSatish Balay     }
9299566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
930a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
9315e116b59SBarry Smith        set the row-oriented flag to column-oriented, and after MatSetValues()
932a2d1c673SSatish Balay        restore the original flags */
933a2d1c673SSatish Balay     r1 = baij->roworiented;
934a2d1c673SSatish Balay     r2 = a->roworiented;
93591c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented;
93626fbe8dcSKarl Rupp 
9377c922b88SBarry Smith     baij->roworiented                           = PETSC_FALSE;
9387c922b88SBarry Smith     a->roworiented                              = PETSC_FALSE;
939f4f49eeaSPierre Jolivet     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE;
940a2d1c673SSatish Balay     while (1) {
9419566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg));
942a2d1c673SSatish Balay       if (!flg) break;
943a2d1c673SSatish Balay 
944a2d1c673SSatish Balay       for (i = 0; i < n;) {
945a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
94626fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
94726fbe8dcSKarl Rupp           if (row[j] != rstart) break;
94826fbe8dcSKarl Rupp         }
949a2d1c673SSatish Balay         if (j < n) ncols = j - i;
950a2d1c673SSatish Balay         else ncols = n - i;
9519566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode));
952a2d1c673SSatish Balay         i = j;
953a2d1c673SSatish Balay       }
954a2d1c673SSatish Balay     }
9559566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->bstash));
95626fbe8dcSKarl Rupp 
957a2d1c673SSatish Balay     baij->roworiented                           = r1;
958a2d1c673SSatish Balay     a->roworiented                              = r2;
9595e116b59SBarry Smith     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3;
960bbb85fb3SSatish Balay   }
961bbb85fb3SSatish Balay 
9629566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->A, mode));
9639566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->A, mode));
964bbb85fb3SSatish Balay 
965b638e6b4SJunchao Zhang   /* determine if any process has disassembled, if so we must
9666aad120cSJose E. Roman      also disassemble ourselves, in order that we may reassemble. */
967bbb85fb3SSatish Balay   /*
968bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
969b638e6b4SJunchao Zhang      no process disassembled thus we can skip this stuff
970bbb85fb3SSatish Balay   */
971bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) {
9725440e5dcSBarry Smith     PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &all_assembled, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
973c0edf612SJunchao Zhang     if (mat->was_assembled && !all_assembled) PetscCall(MatDisAssemble_MPIBAIJ(mat));
974bbb85fb3SSatish Balay   }
975bbb85fb3SSatish Balay 
97648a46eb9SPierre Jolivet   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIBAIJ(mat));
9779566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->B, mode));
9789566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->B, mode));
979bbb85fb3SSatish Balay 
9806cf91177SBarry Smith #if defined(PETSC_USE_INFO)
981bbb85fb3SSatish Balay   if (baij->ht && mode == MAT_FINAL_ASSEMBLY) {
9829566063dSJacob Faibussowitsch     PetscCall(PetscInfo(mat, "Average Hash Table Search in MatSetValues = %5.2f\n", (double)((PetscReal)baij->ht_total_ct) / baij->ht_insert_ct));
98326fbe8dcSKarl Rupp 
984bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
985bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
986bbb85fb3SSatish Balay   }
987bbb85fb3SSatish Balay #endif
988bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
9899566063dSJacob Faibussowitsch     PetscCall(MatCreateHashTable_MPIBAIJ_Private(mat, baij->ht_fact));
99026fbe8dcSKarl Rupp 
991bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
992bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
993bbb85fb3SSatish Balay   }
994bbb85fb3SSatish Balay 
9959566063dSJacob Faibussowitsch   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
99626fbe8dcSKarl Rupp 
997f4259b30SLisandro Dalcin   baij->rowvalues = NULL;
9984f9cfa9eSBarry Smith 
9994f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
1000f4f49eeaSPierre Jolivet   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)baij->A->data)->nonew) {
1001e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
1002462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
1003e56f5c9eSBarry Smith   }
10043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1005bbb85fb3SSatish Balay }
100657b952d6SSatish Balay 
10079804daf3SBarry Smith #include <petscdraw.h>
MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)1008d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
1009d71ae5a4SJacob Faibussowitsch {
101057b952d6SSatish Balay   Mat_MPIBAIJ      *baij = (Mat_MPIBAIJ *)mat->data;
10117da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
1012d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
10139f196a02SMartin Diehl   PetscBool         isascii, isdraw;
1014b0a32e0cSBarry Smith   PetscViewer       sviewer;
1015f3ef73ceSBarry Smith   PetscViewerFormat format;
101657b952d6SSatish Balay 
1017d64ed03dSBarry Smith   PetscFunctionBegin;
10189f196a02SMartin Diehl   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii));
10199566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
10209f196a02SMartin Diehl   if (isascii) {
10219566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1022456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
10234e220ebcSLois Curfman McInnes       MatInfo info;
10249566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
10259566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
10269566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
10279371c9d4SSatish Balay       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
1028835f2295SStefano Zampini                                                    mat->rmap->bs, info.memory));
10299566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info));
10309566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
10319566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info));
10329566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
10339566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
10349566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
10359566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
10369566063dSJacob Faibussowitsch       PetscCall(VecScatterView(baij->Mvctx, viewer));
10373ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1038e363090eSPierre Jolivet     } else if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_FACTOR_INFO) PetscFunctionReturn(PETSC_SUCCESS);
103957b952d6SSatish Balay   }
104057b952d6SSatish Balay 
10410f5bd95cSBarry Smith   if (isdraw) {
1042b0a32e0cSBarry Smith     PetscDraw draw;
1043ace3abfcSBarry Smith     PetscBool isnull;
10449566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
10459566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
10463ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
104757b952d6SSatish Balay   }
104857b952d6SSatish Balay 
10497da1fb6eSBarry Smith   {
105057b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
105157b952d6SSatish Balay     Mat          A;
105257b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
1053d0f46423SBarry Smith     PetscInt     M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs;
10543eda8832SBarry Smith     MatScalar   *a;
10553e219373SBarry Smith     const char  *matname;
105657b952d6SSatish Balay 
1057f204ca49SKris Buschelman     /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */
1058f204ca49SKris Buschelman     /* Perhaps this should be the type of mat? */
10599566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A));
1060dd400576SPatrick Sanan     if (rank == 0) {
10619566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, M, N, M, N));
1062d64ed03dSBarry Smith     } else {
10639566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, 0, 0, M, N));
106457b952d6SSatish Balay     }
10659566063dSJacob Faibussowitsch     PetscCall(MatSetType(A, MATMPIBAIJ));
10669566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL));
10679566063dSJacob Faibussowitsch     PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE));
106857b952d6SSatish Balay 
106957b952d6SSatish Balay     /* copy over the A part */
107057b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ *)baij->A->data;
10719371c9d4SSatish Balay     ai   = Aloc->i;
10729371c9d4SSatish Balay     aj   = Aloc->j;
10739371c9d4SSatish Balay     a    = Aloc->a;
10749566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs, &rvals));
107557b952d6SSatish Balay 
107657b952d6SSatish Balay     for (i = 0; i < mbs; i++) {
1077899cda47SBarry Smith       rvals[0] = bs * (baij->rstartbs + i);
107826fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
107957b952d6SSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
1080899cda47SBarry Smith         col = (baij->cstartbs + aj[j]) * bs;
108157b952d6SSatish Balay         for (k = 0; k < bs; k++) {
10829566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
10839371c9d4SSatish Balay           col++;
10849371c9d4SSatish Balay           a += bs;
108557b952d6SSatish Balay         }
108657b952d6SSatish Balay       }
108757b952d6SSatish Balay     }
108857b952d6SSatish Balay     /* copy over the B part */
108957b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ *)baij->B->data;
10909371c9d4SSatish Balay     ai   = Aloc->i;
10919371c9d4SSatish Balay     aj   = Aloc->j;
10929371c9d4SSatish Balay     a    = Aloc->a;
109357b952d6SSatish Balay     for (i = 0; i < mbs; i++) {
1094899cda47SBarry Smith       rvals[0] = bs * (baij->rstartbs + i);
109526fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
109657b952d6SSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
109757b952d6SSatish Balay         col = baij->garray[aj[j]] * bs;
109857b952d6SSatish Balay         for (k = 0; k < bs; k++) {
10999566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
11009371c9d4SSatish Balay           col++;
11019371c9d4SSatish Balay           a += bs;
110257b952d6SSatish Balay         }
110357b952d6SSatish Balay       }
110457b952d6SSatish Balay     }
11059566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvals));
11069566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
11079566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
110855843e3eSBarry Smith     /*
110955843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1110b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
111155843e3eSBarry Smith     */
11129566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
111323a3927dSBarry Smith     if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname));
1114dd400576SPatrick Sanan     if (rank == 0) {
1115f4f49eeaSPierre Jolivet       if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIBAIJ *)A->data)->A, matname));
1116f4f49eeaSPierre Jolivet       PetscCall(MatView_SeqBAIJ(((Mat_MPIBAIJ *)A->data)->A, sviewer));
111757b952d6SSatish Balay     }
11189566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
11199566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
112057b952d6SSatish Balay   }
11213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
112257b952d6SSatish Balay }
112357b952d6SSatish Balay 
1124618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
MatView_MPIBAIJ_Binary(Mat mat,PetscViewer viewer)1125d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat, PetscViewer viewer)
1126d71ae5a4SJacob Faibussowitsch {
1127b51a4376SLisandro Dalcin   Mat_MPIBAIJ    *aij    = (Mat_MPIBAIJ *)mat->data;
1128b51a4376SLisandro Dalcin   Mat_SeqBAIJ    *A      = (Mat_SeqBAIJ *)aij->A->data;
1129b51a4376SLisandro Dalcin   Mat_SeqBAIJ    *B      = (Mat_SeqBAIJ *)aij->B->data;
1130b51a4376SLisandro Dalcin   const PetscInt *garray = aij->garray;
113117a3732bSBarry Smith   PetscInt        header[4], M, N, m, rs, cs, bs, cnt, i, j, ja, jb, k, l;
11326497c311SBarry Smith   PetscCount      nz, hnz;
1133b51a4376SLisandro Dalcin   PetscInt       *rowlens, *colidxs;
1134b51a4376SLisandro Dalcin   PetscScalar    *matvals;
113517a3732bSBarry Smith   PetscMPIInt     rank;
1136660746e0SBarry Smith 
1137660746e0SBarry Smith   PetscFunctionBegin;
11389566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
1139b51a4376SLisandro Dalcin 
1140b51a4376SLisandro Dalcin   M  = mat->rmap->N;
1141b51a4376SLisandro Dalcin   N  = mat->cmap->N;
1142b51a4376SLisandro Dalcin   m  = mat->rmap->n;
1143b51a4376SLisandro Dalcin   rs = mat->rmap->rstart;
1144b51a4376SLisandro Dalcin   cs = mat->cmap->rstart;
1145b51a4376SLisandro Dalcin   bs = mat->rmap->bs;
1146b51a4376SLisandro Dalcin   nz = bs * bs * (A->nz + B->nz);
1147b51a4376SLisandro Dalcin 
1148b51a4376SLisandro Dalcin   /* write matrix header */
1149660746e0SBarry Smith   header[0] = MAT_FILE_CLASSID;
11509371c9d4SSatish Balay   header[1] = M;
11519371c9d4SSatish Balay   header[2] = N;
11526497c311SBarry Smith   PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_COUNT, MPI_SUM, 0, PetscObjectComm((PetscObject)mat)));
115317a3732bSBarry Smith   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
115417a3732bSBarry Smith   if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3]));
11559566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT));
1156660746e0SBarry Smith 
1157b51a4376SLisandro Dalcin   /* fill in and store row lengths */
11589566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &rowlens));
1159b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++)
11609371c9d4SSatish Balay     for (j = 0; j < bs; j++) rowlens[cnt++] = bs * (A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]);
11619566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT));
11629566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowlens));
1163660746e0SBarry Smith 
1164b51a4376SLisandro Dalcin   /* fill in and store column indices */
11659566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &colidxs));
1166b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++) {
1167b51a4376SLisandro Dalcin     for (k = 0; k < bs; k++) {
1168b51a4376SLisandro Dalcin       for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
1169b51a4376SLisandro Dalcin         if (garray[B->j[jb]] > cs / bs) break;
11709371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l;
1171660746e0SBarry Smith       }
1172b51a4376SLisandro Dalcin       for (ja = A->i[i]; ja < A->i[i + 1]; ja++)
11739371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * A->j[ja] + l + cs;
1174b51a4376SLisandro Dalcin       for (; jb < B->i[i + 1]; jb++)
11759371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l;
1176660746e0SBarry Smith     }
1177660746e0SBarry Smith   }
11786497c311SBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscCount_FMT, cnt, nz);
11799566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_INT));
11809566063dSJacob Faibussowitsch   PetscCall(PetscFree(colidxs));
1181660746e0SBarry Smith 
1182b51a4376SLisandro Dalcin   /* fill in and store nonzero values */
11839566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &matvals));
1184b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++) {
1185b51a4376SLisandro Dalcin     for (k = 0; k < bs; k++) {
1186b51a4376SLisandro Dalcin       for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
1187b51a4376SLisandro Dalcin         if (garray[B->j[jb]] > cs / bs) break;
11889371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k];
1189660746e0SBarry Smith       }
1190b51a4376SLisandro Dalcin       for (ja = A->i[i]; ja < A->i[i + 1]; ja++)
11919371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = A->a[bs * (bs * ja + l) + k];
1192b51a4376SLisandro Dalcin       for (; jb < B->i[i + 1]; jb++)
11939371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k];
1194660746e0SBarry Smith     }
1195b51a4376SLisandro Dalcin   }
11969566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_SCALAR));
11979566063dSJacob Faibussowitsch   PetscCall(PetscFree(matvals));
1198660746e0SBarry Smith 
1199b51a4376SLisandro Dalcin   /* write block size option to the viewer's .info file */
12009566063dSJacob Faibussowitsch   PetscCall(MatView_Binary_BlockSizes(mat, viewer));
12013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1202660746e0SBarry Smith }
1203660746e0SBarry Smith 
MatView_MPIBAIJ(Mat mat,PetscViewer viewer)1204d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ(Mat mat, PetscViewer viewer)
1205d71ae5a4SJacob Faibussowitsch {
12069f196a02SMartin Diehl   PetscBool isascii, isdraw, issocket, isbinary;
120757b952d6SSatish Balay 
1208d64ed03dSBarry Smith   PetscFunctionBegin;
12099f196a02SMartin Diehl   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii));
12109566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
12119566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
12129566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
1213ac530a7eSPierre Jolivet   if (isascii || isdraw || issocket) PetscCall(MatView_MPIBAIJ_ASCIIorDraworSocket(mat, viewer));
1214ac530a7eSPierre Jolivet   else if (isbinary) PetscCall(MatView_MPIBAIJ_Binary(mat, viewer));
12153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
121657b952d6SSatish Balay }
121757b952d6SSatish Balay 
MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy)121866976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPIBAIJ(Mat A, Vec xx, Vec yy)
1219d71ae5a4SJacob Faibussowitsch {
1220cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1221b24ad042SBarry Smith   PetscInt     nt;
1222cee3aa6bSSatish Balay 
1223d64ed03dSBarry Smith   PetscFunctionBegin;
12249566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(xx, &nt));
12255f80ce2aSJacob Faibussowitsch   PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and xx");
12269566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(yy, &nt));
1227da81f932SPierre Jolivet   PetscCheck(nt == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and yy");
12289566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12299566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A, xx, yy));
12309566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12319566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, yy, yy));
12323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1233cee3aa6bSSatish Balay }
1234cee3aa6bSSatish Balay 
MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)123566976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1236d71ae5a4SJacob Faibussowitsch {
1237cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1238d64ed03dSBarry Smith 
1239d64ed03dSBarry Smith   PetscFunctionBegin;
12409566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12419566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz));
12429566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12439566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz));
12443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1245cee3aa6bSSatish Balay }
1246cee3aa6bSSatish Balay 
MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy)124766976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A, Vec xx, Vec yy)
1248d71ae5a4SJacob Faibussowitsch {
1249cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1250cee3aa6bSSatish Balay 
1251d64ed03dSBarry Smith   PetscFunctionBegin;
1252cee3aa6bSSatish Balay   /* do nondiagonal part */
12539566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1254cee3aa6bSSatish Balay   /* do local part */
12559566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy));
1256e4a140f6SJunchao Zhang   /* add partial results together */
12579566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
12589566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
12593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1260cee3aa6bSSatish Balay }
1261cee3aa6bSSatish Balay 
MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)126266976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1263d71ae5a4SJacob Faibussowitsch {
1264cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1265cee3aa6bSSatish Balay 
1266d64ed03dSBarry Smith   PetscFunctionBegin;
1267cee3aa6bSSatish Balay   /* do nondiagonal part */
12689566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1269cee3aa6bSSatish Balay   /* do local part */
12709566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz));
1271e4a140f6SJunchao Zhang   /* add partial results together */
12729566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
12739566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
12743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1275cee3aa6bSSatish Balay }
1276cee3aa6bSSatish Balay 
1277cee3aa6bSSatish Balay /*
1278cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1279cee3aa6bSSatish Balay    diagonal block
1280cee3aa6bSSatish Balay */
MatGetDiagonal_MPIBAIJ(Mat A,Vec v)128166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A, Vec v)
1282d71ae5a4SJacob Faibussowitsch {
1283d64ed03dSBarry Smith   PetscFunctionBegin;
12845f80ce2aSJacob Faibussowitsch   PetscCheck(A->rmap->N == A->cmap->N, PETSC_COMM_SELF, PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block");
12859566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(((Mat_MPIBAIJ *)A->data)->A, v));
12863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1287cee3aa6bSSatish Balay }
1288cee3aa6bSSatish Balay 
MatScale_MPIBAIJ(Mat A,PetscScalar aa)128966976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPIBAIJ(Mat A, PetscScalar aa)
1290d71ae5a4SJacob Faibussowitsch {
1291cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1292d64ed03dSBarry Smith 
1293d64ed03dSBarry Smith   PetscFunctionBegin;
12949566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
12959566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
12963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1297cee3aa6bSSatish Balay }
1298026e39d0SSatish Balay 
MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt * nz,PetscInt ** idx,PetscScalar ** v)1299523895eeSPierre Jolivet static PetscErrorCode MatGetRow_MPIBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1300d71ae5a4SJacob Faibussowitsch {
1301acdf5bf4SSatish Balay   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data;
130287828ca2SBarry Smith   PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p;
1303d0f46423SBarry Smith   PetscInt     bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB;
1304d0f46423SBarry Smith   PetscInt     nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend;
1305899cda47SBarry Smith   PetscInt    *cmap, *idx_p, cstart = mat->cstartbs;
1306acdf5bf4SSatish Balay 
1307d64ed03dSBarry Smith   PetscFunctionBegin;
13085f80ce2aSJacob Faibussowitsch   PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows");
13095f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
1310acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1311acdf5bf4SSatish Balay 
1312acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1313acdf5bf4SSatish Balay     /*
1314acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1315acdf5bf4SSatish Balay     */
1316acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *)mat->A->data, *Ba = (Mat_SeqBAIJ *)mat->B->data;
1317b24ad042SBarry Smith     PetscInt     max = 1, mbs = mat->mbs, tmp;
1318bd16c2feSSatish Balay     for (i = 0; i < mbs; i++) {
1319acdf5bf4SSatish Balay       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i];
132026fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1321acdf5bf4SSatish Balay     }
13229566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices));
1323acdf5bf4SSatish Balay   }
1324d9d09a02SSatish Balay   lrow = row - brstart;
1325acdf5bf4SSatish Balay 
13269371c9d4SSatish Balay   pvA = &vworkA;
13279371c9d4SSatish Balay   pcA = &cworkA;
13289371c9d4SSatish Balay   pvB = &vworkB;
13299371c9d4SSatish Balay   pcB = &cworkB;
13309371c9d4SSatish Balay   if (!v) {
13319371c9d4SSatish Balay     pvA = NULL;
13329371c9d4SSatish Balay     pvB = NULL;
13339371c9d4SSatish Balay   }
13349371c9d4SSatish Balay   if (!idx) {
13359371c9d4SSatish Balay     pcA = NULL;
13369371c9d4SSatish Balay     if (!v) pcB = NULL;
13379371c9d4SSatish Balay   }
13389566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
13399566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1340acdf5bf4SSatish Balay   nztot = nzA + nzB;
1341acdf5bf4SSatish Balay 
1342acdf5bf4SSatish Balay   cmap = mat->garray;
1343acdf5bf4SSatish Balay   if (v || idx) {
1344acdf5bf4SSatish Balay     if (nztot) {
1345acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1346b24ad042SBarry Smith       PetscInt imark = -1;
1347acdf5bf4SSatish Balay       if (v) {
1348acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1349acdf5bf4SSatish Balay         for (i = 0; i < nzB; i++) {
1350d9d09a02SSatish Balay           if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i];
1351acdf5bf4SSatish Balay           else break;
1352acdf5bf4SSatish Balay         }
1353acdf5bf4SSatish Balay         imark = i;
1354acdf5bf4SSatish Balay         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
1355acdf5bf4SSatish Balay         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1356acdf5bf4SSatish Balay       }
1357acdf5bf4SSatish Balay       if (idx) {
1358acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1359acdf5bf4SSatish Balay         if (imark > -1) {
1360ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1361acdf5bf4SSatish Balay         } else {
1362acdf5bf4SSatish Balay           for (i = 0; i < nzB; i++) {
136326fbe8dcSKarl Rupp             if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1364acdf5bf4SSatish Balay             else break;
1365acdf5bf4SSatish Balay           }
1366acdf5bf4SSatish Balay           imark = i;
1367acdf5bf4SSatish Balay         }
1368d9d09a02SSatish Balay         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i];
1369d9d09a02SSatish Balay         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1370acdf5bf4SSatish Balay       }
1371d64ed03dSBarry Smith     } else {
1372f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1373f4259b30SLisandro Dalcin       if (v) *v = NULL;
1374d212a18eSSatish Balay     }
1375acdf5bf4SSatish Balay   }
1376acdf5bf4SSatish Balay   *nz = nztot;
13779566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
13789566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
13793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1380acdf5bf4SSatish Balay }
1381acdf5bf4SSatish Balay 
MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt * nz,PetscInt ** idx,PetscScalar ** v)1382523895eeSPierre Jolivet static PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1383d71ae5a4SJacob Faibussowitsch {
1384acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
1385d64ed03dSBarry Smith 
1386d64ed03dSBarry Smith   PetscFunctionBegin;
13875f80ce2aSJacob Faibussowitsch   PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow not called");
1388acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
13893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1390acdf5bf4SSatish Balay }
1391acdf5bf4SSatish Balay 
MatZeroEntries_MPIBAIJ(Mat A)139266976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A)
1393d71ae5a4SJacob Faibussowitsch {
139458667388SSatish Balay   Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data;
1395d64ed03dSBarry Smith 
1396d64ed03dSBarry Smith   PetscFunctionBegin;
13979566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
13989566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
13993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
140058667388SSatish Balay }
14010ac07820SSatish Balay 
MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo * info)140266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1403d71ae5a4SJacob Faibussowitsch {
14044e220ebcSLois Curfman McInnes   Mat_MPIBAIJ   *a = (Mat_MPIBAIJ *)matin->data;
14054e220ebcSLois Curfman McInnes   Mat            A = a->A, B = a->B;
14063966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
14070ac07820SSatish Balay 
1408d64ed03dSBarry Smith   PetscFunctionBegin;
1409d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
141026fbe8dcSKarl Rupp 
14119566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
141226fbe8dcSKarl Rupp 
14139371c9d4SSatish Balay   isend[0] = info->nz_used;
14149371c9d4SSatish Balay   isend[1] = info->nz_allocated;
14159371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
14169371c9d4SSatish Balay   isend[3] = info->memory;
14179371c9d4SSatish Balay   isend[4] = info->mallocs;
141826fbe8dcSKarl Rupp 
14199566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
142026fbe8dcSKarl Rupp 
14219371c9d4SSatish Balay   isend[0] += info->nz_used;
14229371c9d4SSatish Balay   isend[1] += info->nz_allocated;
14239371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
14249371c9d4SSatish Balay   isend[3] += info->memory;
14259371c9d4SSatish Balay   isend[4] += info->mallocs;
142626fbe8dcSKarl Rupp 
14270ac07820SSatish Balay   if (flag == MAT_LOCAL) {
14284e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
14294e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
14304e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
14314e220ebcSLois Curfman McInnes     info->memory       = isend[3];
14324e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
14330ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1434462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
143526fbe8dcSKarl Rupp 
14364e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14374e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14384e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14394e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14404e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
14410ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1442462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
144326fbe8dcSKarl Rupp 
14444e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14454e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14464e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14474e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14484e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
144998921bdaSJacob Faibussowitsch   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag);
14504e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
14514e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
14524e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
14533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14540ac07820SSatish Balay }
14550ac07820SSatish Balay 
MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscBool flg)145666976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPIBAIJ(Mat A, MatOption op, PetscBool flg)
1457d71ae5a4SJacob Faibussowitsch {
145858667388SSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
145958667388SSatish Balay 
1460d64ed03dSBarry Smith   PetscFunctionBegin;
146112c028f9SKris Buschelman   switch (op) {
1462512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
146312c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
146428b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1465a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
146612c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
146743674050SBarry Smith     MatCheckPreallocated(A, 1);
14689566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
14699566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
147012c028f9SKris Buschelman     break;
147112c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
147243674050SBarry Smith     MatCheckPreallocated(A, 1);
14734e0d8c25SBarry Smith     a->roworiented = flg;
147426fbe8dcSKarl Rupp 
14759566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
14769566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
147712c028f9SKris Buschelman     break;
1478d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
1479d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
1480d71ae5a4SJacob Faibussowitsch     break;
148112c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
14824e0d8c25SBarry Smith     a->ht_flag = flg;
1483abf3b562SBarry Smith     a->ht_fact = 1.39;
148412c028f9SKris Buschelman     break;
148577e54ba9SKris Buschelman   case MAT_SYMMETRIC:
148677e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
14872188ac68SBarry Smith   case MAT_HERMITIAN:
14882188ac68SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1489b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
1490b94d7dedSBarry Smith   case MAT_SPD_ETERNAL:
1491b94d7dedSBarry Smith     /* if the diagonal matrix is square it inherits some of the properties above */
14929725ddffSPierre Jolivet     if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg));
149377e54ba9SKris Buschelman     break;
1494d71ae5a4SJacob Faibussowitsch   default:
1495888c827cSStefano Zampini     break;
1496d64ed03dSBarry Smith   }
14973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
149858667388SSatish Balay }
149958667388SSatish Balay 
MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat * matout)150066976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIBAIJ(Mat A, MatReuse reuse, Mat *matout)
1501d71ae5a4SJacob Faibussowitsch {
15020ac07820SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)A->data;
15030ac07820SSatish Balay   Mat_SeqBAIJ *Aloc;
15040ac07820SSatish Balay   Mat          B;
1505d0f46423SBarry Smith   PetscInt     M = A->rmap->N, N = A->cmap->N, *ai, *aj, i, *rvals, j, k, col;
1506d0f46423SBarry Smith   PetscInt     bs = A->rmap->bs, mbs = baij->mbs;
15073eda8832SBarry Smith   MatScalar   *a;
15080ac07820SSatish Balay 
1509d64ed03dSBarry Smith   PetscFunctionBegin;
15107fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout));
1511cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) {
15129566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
15139566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M));
15149566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)A)->type_name));
15152e72b8d9SBarry Smith     /* Do not know preallocation information, but must set block size */
15169566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(B, A->rmap->bs, PETSC_DECIDE, NULL, PETSC_DECIDE, NULL));
1517fc4dec0aSBarry Smith   } else {
1518fc4dec0aSBarry Smith     B = *matout;
1519fc4dec0aSBarry Smith   }
15200ac07820SSatish Balay 
15210ac07820SSatish Balay   /* copy over the A part */
15220ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ *)baij->A->data;
15239371c9d4SSatish Balay   ai   = Aloc->i;
15249371c9d4SSatish Balay   aj   = Aloc->j;
15259371c9d4SSatish Balay   a    = Aloc->a;
15269566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bs, &rvals));
15270ac07820SSatish Balay 
15280ac07820SSatish Balay   for (i = 0; i < mbs; i++) {
1529899cda47SBarry Smith     rvals[0] = bs * (baij->rstartbs + i);
153026fbe8dcSKarl Rupp     for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
15310ac07820SSatish Balay     for (j = ai[i]; j < ai[i + 1]; j++) {
1532899cda47SBarry Smith       col = (baij->cstartbs + aj[j]) * bs;
15330ac07820SSatish Balay       for (k = 0; k < bs; k++) {
15349566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES));
153526fbe8dcSKarl Rupp 
15369371c9d4SSatish Balay         col++;
15379371c9d4SSatish Balay         a += bs;
15380ac07820SSatish Balay       }
15390ac07820SSatish Balay     }
15400ac07820SSatish Balay   }
15410ac07820SSatish Balay   /* copy over the B part */
15420ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ *)baij->B->data;
15439371c9d4SSatish Balay   ai   = Aloc->i;
15449371c9d4SSatish Balay   aj   = Aloc->j;
15459371c9d4SSatish Balay   a    = Aloc->a;
15460ac07820SSatish Balay   for (i = 0; i < mbs; i++) {
1547899cda47SBarry Smith     rvals[0] = bs * (baij->rstartbs + i);
154826fbe8dcSKarl Rupp     for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
15490ac07820SSatish Balay     for (j = ai[i]; j < ai[i + 1]; j++) {
15500ac07820SSatish Balay       col = baij->garray[aj[j]] * bs;
15510ac07820SSatish Balay       for (k = 0; k < bs; k++) {
15529566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES));
155326fbe8dcSKarl Rupp         col++;
155426fbe8dcSKarl Rupp         a += bs;
15550ac07820SSatish Balay       }
15560ac07820SSatish Balay     }
15570ac07820SSatish Balay   }
15589566063dSJacob Faibussowitsch   PetscCall(PetscFree(rvals));
15599566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
15609566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
15610ac07820SSatish Balay 
1562cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B;
156348a46eb9SPierre Jolivet   else PetscCall(MatHeaderMerge(A, &B));
15643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
15650ac07820SSatish Balay }
15660e95ebc0SSatish Balay 
MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr)156766976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat, Vec ll, Vec rr)
1568d71ae5a4SJacob Faibussowitsch {
156936c4a09eSSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
157036c4a09eSSatish Balay   Mat          a = baij->A, b = baij->B;
1571b24ad042SBarry Smith   PetscInt     s1, s2, s3;
15720e95ebc0SSatish Balay 
1573d64ed03dSBarry Smith   PetscFunctionBegin;
15749566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &s2, &s3));
157536c4a09eSSatish Balay   if (rr) {
15769566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr, &s1));
15775f80ce2aSJacob Faibussowitsch     PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size");
157836c4a09eSSatish Balay     /* Overlap communication with computation. */
15799566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
158036c4a09eSSatish Balay   }
15810e95ebc0SSatish Balay   if (ll) {
15829566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll, &s1));
15835f80ce2aSJacob Faibussowitsch     PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size");
1584dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, ll, NULL);
15850e95ebc0SSatish Balay   }
158636c4a09eSSatish Balay   /* scale  the diagonal block */
1587dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
158836c4a09eSSatish Balay 
158936c4a09eSSatish Balay   if (rr) {
159036c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
15919566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1592dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec);
159336c4a09eSSatish Balay   }
15943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
15950e95ebc0SSatish Balay }
15960e95ebc0SSatish Balay 
MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)159766976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
1598d71ae5a4SJacob Faibussowitsch {
15990ac07820SSatish Balay   Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data;
160065a92638SMatthew G. Knepley   PetscInt    *lrows;
16016e520ac8SStefano Zampini   PetscInt     r, len;
160294342113SStefano Zampini   PetscBool    cong;
16030ac07820SSatish Balay 
1604d64ed03dSBarry Smith   PetscFunctionBegin;
16056e520ac8SStefano Zampini   /* get locally owned rows */
16069566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows));
1607dd8e379bSPierre Jolivet   /* fix right-hand side if needed */
160897b48c8fSBarry Smith   if (x && b) {
160965a92638SMatthew G. Knepley     const PetscScalar *xx;
161065a92638SMatthew G. Knepley     PetscScalar       *bb;
161165a92638SMatthew G. Knepley 
16129566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xx));
16139566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
161465a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]];
16159566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xx));
16169566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
161797b48c8fSBarry Smith   }
161897b48c8fSBarry Smith 
16190ac07820SSatish Balay   /* actually zap the local rows */
162072dacd9aSBarry Smith   /*
162172dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
1622a8c7a070SBarry Smith      is square and the user wishes to set the diagonal we use separate
162372dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
162472dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
162572dacd9aSBarry Smith 
162672dacd9aSBarry Smith   */
16279c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
16289566063dSJacob Faibussowitsch   PetscCall(MatZeroRows_SeqBAIJ(l->B, len, lrows, 0.0, NULL, NULL));
16299566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(A, &cong));
163094342113SStefano Zampini   if ((diag != 0.0) && cong) {
16319566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, diag, NULL, NULL));
1632f4df32b1SMatthew Knepley   } else if (diag != 0.0) {
16339566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL));
163400045ab3SPierre Jolivet     PetscCheck(!((Mat_SeqBAIJ *)l->A->data)->nonew, PETSC_COMM_SELF, PETSC_ERR_SUP, "MatZeroRows() on rectangular matrices cannot be used with the Mat options MAT_NEW_NONZERO_LOCATIONS, MAT_NEW_NONZERO_LOCATION_ERR, and MAT_NEW_NONZERO_ALLOCATION_ERR");
163565a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) {
163665a92638SMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
16379566063dSJacob Faibussowitsch       PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES));
1638a07cd24cSSatish Balay     }
16399566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
16409566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
16419c957beeSSatish Balay   } else {
16429566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL));
1643a07cd24cSSatish Balay   }
16449566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
16454f9cfa9eSBarry Smith 
16464f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
1647f4f49eeaSPierre Jolivet   if (!((Mat_SeqBAIJ *)l->A->data)->keepnonzeropattern || !((Mat_SeqBAIJ *)l->A->data)->nonew) {
1648e56f5c9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
1649462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
1650e56f5c9eSBarry Smith   }
16513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
16520ac07820SSatish Balay }
165372dacd9aSBarry Smith 
MatZeroRowsColumns_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)165466976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
1655d71ae5a4SJacob Faibussowitsch {
16566f0a72daSMatthew G. Knepley   Mat_MPIBAIJ       *l = (Mat_MPIBAIJ *)A->data;
16576497c311SBarry Smith   PetscMPIInt        n, p = 0;
1658131c27b5Sprj-   PetscInt           i, j, k, r, len = 0, row, col, count;
16596f0a72daSMatthew G. Knepley   PetscInt          *lrows, *owners = A->rmap->range;
16606f0a72daSMatthew G. Knepley   PetscSFNode       *rrows;
16616f0a72daSMatthew G. Knepley   PetscSF            sf;
16626f0a72daSMatthew G. Knepley   const PetscScalar *xx;
16636f0a72daSMatthew G. Knepley   PetscScalar       *bb, *mask;
16646f0a72daSMatthew G. Knepley   Vec                xmask, lmask;
16656f0a72daSMatthew G. Knepley   Mat_SeqBAIJ       *baij = (Mat_SeqBAIJ *)l->B->data;
16666f0a72daSMatthew G. Knepley   PetscInt           bs = A->rmap->bs, bs2 = baij->bs2;
16676f0a72daSMatthew G. Knepley   PetscScalar       *aa;
16686f0a72daSMatthew G. Knepley 
16696f0a72daSMatthew G. Knepley   PetscFunctionBegin;
16706497c311SBarry Smith   PetscCall(PetscMPIIntCast(A->rmap->n, &n));
16716f0a72daSMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
16729566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &lrows));
16736f0a72daSMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
16749566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &rrows));
16756f0a72daSMatthew G. Knepley   for (r = 0; r < N; ++r) {
16766f0a72daSMatthew G. Knepley     const PetscInt idx = rows[r];
16775f80ce2aSJacob Faibussowitsch     PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N);
16785ba17502SJed Brown     if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */
16799566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p));
16805ba17502SJed Brown     }
16816f0a72daSMatthew G. Knepley     rrows[r].rank  = p;
16826f0a72daSMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
16836f0a72daSMatthew G. Knepley   }
16849566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
16859566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER));
16866f0a72daSMatthew G. Knepley   /* Collect flags for rows to be zeroed */
16879566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
16889566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
16899566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
16906f0a72daSMatthew G. Knepley   /* Compress and put in row numbers */
16919371c9d4SSatish Balay   for (r = 0; r < n; ++r)
16929371c9d4SSatish Balay     if (lrows[r] >= 0) lrows[len++] = r;
16936f0a72daSMatthew G. Knepley   /* zero diagonal part of matrix */
16949566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b));
16954cf0e950SBarry Smith   /* handle off-diagonal part of matrix */
16969566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(A, &xmask, NULL));
16979566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(l->lvec, &lmask));
16989566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xmask, &bb));
16996f0a72daSMatthew G. Knepley   for (i = 0; i < len; i++) bb[lrows[i]] = 1;
17009566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xmask, &bb));
17019566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
17029566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
17039566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&xmask));
17046f0a72daSMatthew G. Knepley   if (x) {
17059566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
17069566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
17079566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(l->lvec, &xx));
17089566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
17096f0a72daSMatthew G. Knepley   }
17109566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lmask, &mask));
17114cf0e950SBarry Smith   /* remove zeroed rows of off-diagonal matrix */
17126f0a72daSMatthew G. Knepley   for (i = 0; i < len; ++i) {
17136f0a72daSMatthew G. Knepley     row   = lrows[i];
17146f0a72daSMatthew G. Knepley     count = (baij->i[row / bs + 1] - baij->i[row / bs]) * bs;
1715835f2295SStefano Zampini     aa    = baij->a + baij->i[row / bs] * bs2 + (row % bs);
17166f0a72daSMatthew G. Knepley     for (k = 0; k < count; ++k) {
17176f0a72daSMatthew G. Knepley       aa[0] = 0.0;
17186f0a72daSMatthew G. Knepley       aa += bs;
17196f0a72daSMatthew G. Knepley     }
17206f0a72daSMatthew G. Knepley   }
17216f0a72daSMatthew G. Knepley   /* loop over all elements of off process part of matrix zeroing removed columns*/
17226f0a72daSMatthew G. Knepley   for (i = 0; i < l->B->rmap->N; ++i) {
17236f0a72daSMatthew G. Knepley     row = i / bs;
17246f0a72daSMatthew G. Knepley     for (j = baij->i[row]; j < baij->i[row + 1]; ++j) {
17256f0a72daSMatthew G. Knepley       for (k = 0; k < bs; ++k) {
17266f0a72daSMatthew G. Knepley         col = bs * baij->j[j] + k;
17276f0a72daSMatthew G. Knepley         if (PetscAbsScalar(mask[col])) {
1728835f2295SStefano Zampini           aa = baij->a + j * bs2 + (i % bs) + bs * k;
172989ae1891SBarry Smith           if (x) bb[i] -= aa[0] * xx[col];
17306f0a72daSMatthew G. Knepley           aa[0] = 0.0;
17316f0a72daSMatthew G. Knepley         }
17326f0a72daSMatthew G. Knepley       }
17336f0a72daSMatthew G. Knepley     }
17346f0a72daSMatthew G. Knepley   }
17356f0a72daSMatthew G. Knepley   if (x) {
17369566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
17379566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(l->lvec, &xx));
17386f0a72daSMatthew G. Knepley   }
17399566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lmask, &mask));
17409566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lmask));
17419566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
17424f9cfa9eSBarry Smith 
17434f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
1744f4f49eeaSPierre Jolivet   if (!((Mat_SeqBAIJ *)l->A->data)->nonew) {
17454f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
1746462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
17474f9cfa9eSBarry Smith   }
17483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17496f0a72daSMatthew G. Knepley }
17506f0a72daSMatthew G. Knepley 
MatSetUnfactored_MPIBAIJ(Mat A)175166976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A)
1752d71ae5a4SJacob Faibussowitsch {
1753bb5a7306SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1754d64ed03dSBarry Smith 
1755d64ed03dSBarry Smith   PetscFunctionBegin;
17569566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
17573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1758bb5a7306SBarry Smith }
1759bb5a7306SBarry Smith 
17606849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat, MatDuplicateOption, Mat *);
17610ac07820SSatish Balay 
MatEqual_MPIBAIJ(Mat A,Mat B,PetscBool * flag)176266976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIBAIJ(Mat A, Mat B, PetscBool *flag)
1763d71ae5a4SJacob Faibussowitsch {
17647fc3c18eSBarry Smith   Mat_MPIBAIJ *matB = (Mat_MPIBAIJ *)B->data, *matA = (Mat_MPIBAIJ *)A->data;
17657fc3c18eSBarry Smith   Mat          a, b, c, d;
1766ace3abfcSBarry Smith   PetscBool    flg;
17677fc3c18eSBarry Smith 
17687fc3c18eSBarry Smith   PetscFunctionBegin;
17699371c9d4SSatish Balay   a = matA->A;
17709371c9d4SSatish Balay   b = matA->B;
17719371c9d4SSatish Balay   c = matB->A;
17729371c9d4SSatish Balay   d = matB->B;
17737fc3c18eSBarry Smith 
17749566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
177548a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
17765440e5dcSBarry Smith   PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
17773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17787fc3c18eSBarry Smith }
17797fc3c18eSBarry Smith 
MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str)178066976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIBAIJ(Mat A, Mat B, MatStructure str)
1781d71ae5a4SJacob Faibussowitsch {
17823c896bc6SHong Zhang   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
17833c896bc6SHong Zhang   Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data;
17843c896bc6SHong Zhang 
17853c896bc6SHong Zhang   PetscFunctionBegin;
17863c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
17873c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
17889566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
17893c896bc6SHong Zhang   } else {
17909566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
17919566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
17923c896bc6SHong Zhang   }
17939566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
17943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17953c896bc6SHong Zhang }
1796273d9f13SBarry Smith 
MatAXPYGetPreallocation_MPIBAIJ(Mat Y,const PetscInt * yltog,Mat X,const PetscInt * xltog,PetscInt * nnz)1797d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz)
1798d71ae5a4SJacob Faibussowitsch {
1799001ddc4fSHong Zhang   PetscInt     bs = Y->rmap->bs, m = Y->rmap->N / bs;
18004de5dceeSHong Zhang   Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data;
18014de5dceeSHong Zhang   Mat_SeqBAIJ *y = (Mat_SeqBAIJ *)Y->data;
18024de5dceeSHong Zhang 
18034de5dceeSHong Zhang   PetscFunctionBegin;
18049566063dSJacob Faibussowitsch   PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz));
18053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18064de5dceeSHong Zhang }
18074de5dceeSHong Zhang 
MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)180866976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
1809d71ae5a4SJacob Faibussowitsch {
18104fe895cdSHong Zhang   Mat_MPIBAIJ *xx = (Mat_MPIBAIJ *)X->data, *yy = (Mat_MPIBAIJ *)Y->data;
18114fe895cdSHong Zhang   PetscBLASInt bnz, one                         = 1;
18124fe895cdSHong Zhang   Mat_SeqBAIJ *x, *y;
1813b31f67cfSBarry Smith   PetscInt     bs2 = Y->rmap->bs * Y->rmap->bs;
18144fe895cdSHong Zhang 
18154fe895cdSHong Zhang   PetscFunctionBegin;
18164fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
18174fe895cdSHong Zhang     PetscScalar alpha = a;
18184fe895cdSHong Zhang     x                 = (Mat_SeqBAIJ *)xx->A->data;
18194fe895cdSHong Zhang     y                 = (Mat_SeqBAIJ *)yy->A->data;
18209566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz));
1821792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one));
18224fe895cdSHong Zhang     x = (Mat_SeqBAIJ *)xx->B->data;
18234fe895cdSHong Zhang     y = (Mat_SeqBAIJ *)yy->B->data;
18249566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz));
1825792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one));
18269566063dSJacob Faibussowitsch     PetscCall(PetscObjectStateIncrease((PetscObject)Y));
1827ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
18289566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
18294fe895cdSHong Zhang   } else {
18304de5dceeSHong Zhang     Mat       B;
18314de5dceeSHong Zhang     PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs;
18329566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
18339566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
18349566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
18359566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
18369566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N));
18379566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizesFromMats(B, Y, Y));
18389566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATMPIBAIJ));
18399566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqBAIJ(yy->A, xx->A, nnz_d));
18409566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
18419566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o));
18424de5dceeSHong Zhang     /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */
18439566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
18449566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
18459566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
18469566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
18474fe895cdSHong Zhang   }
18483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18494fe895cdSHong Zhang }
18504fe895cdSHong Zhang 
MatConjugate_MPIBAIJ(Mat mat)185166976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIBAIJ(Mat mat)
1852d71ae5a4SJacob Faibussowitsch {
18532726fb6dSPierre Jolivet   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)mat->data;
18542726fb6dSPierre Jolivet 
185565d0d443SPierre Jolivet   PetscFunctionBegin;
18569566063dSJacob Faibussowitsch   PetscCall(MatConjugate_SeqBAIJ(a->A));
18579566063dSJacob Faibussowitsch   PetscCall(MatConjugate_SeqBAIJ(a->B));
18583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18592726fb6dSPierre Jolivet }
18602726fb6dSPierre Jolivet 
MatRealPart_MPIBAIJ(Mat A)186166976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIBAIJ(Mat A)
1862d71ae5a4SJacob Faibussowitsch {
186399cafbc1SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
186499cafbc1SBarry Smith 
186599cafbc1SBarry Smith   PetscFunctionBegin;
18669566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
18679566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
18683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
186999cafbc1SBarry Smith }
187099cafbc1SBarry Smith 
MatImaginaryPart_MPIBAIJ(Mat A)187166976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A)
1872d71ae5a4SJacob Faibussowitsch {
187399cafbc1SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
187499cafbc1SBarry Smith 
187599cafbc1SBarry Smith   PetscFunctionBegin;
18769566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
18779566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
18783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
187999cafbc1SBarry Smith }
188099cafbc1SBarry Smith 
MatCreateSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat * newmat)188166976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
1882d71ae5a4SJacob Faibussowitsch {
18834aa3045dSJed Brown   IS       iscol_local;
18844aa3045dSJed Brown   PetscInt csize;
18854aa3045dSJed Brown 
18864aa3045dSJed Brown   PetscFunctionBegin;
18879566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
1888b79d0421SJed Brown   if (call == MAT_REUSE_MATRIX) {
18899566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
18905f80ce2aSJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
1891b79d0421SJed Brown   } else {
18929566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
1893b79d0421SJed Brown   }
1894fdfbdca6SPierre Jolivet   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, call, newmat, PETSC_FALSE));
1895b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
18969566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
18979566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
1898b79d0421SJed Brown   }
18993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
19004aa3045dSJed Brown }
190117df9f7cSHong Zhang 
190282094794SBarry Smith /*
190382094794SBarry Smith   Not great since it makes two copies of the submatrix, first an SeqBAIJ
190482094794SBarry Smith   in local and then by concatenating the local matrices the end result.
19057dae84e0SHong Zhang   Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ().
19068f46ffcaSHong Zhang   This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency).
190782094794SBarry Smith */
MatCreateSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat * newmat,PetscBool sym)1908fdfbdca6SPierre Jolivet PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat, PetscBool sym)
1909d71ae5a4SJacob Faibussowitsch {
191082094794SBarry Smith   PetscMPIInt  rank, size;
191182094794SBarry Smith   PetscInt     i, m, n, rstart, row, rend, nz, *cwork, j, bs;
1912c9ffca76SHong Zhang   PetscInt    *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
191329dcf524SDmitry Karpeev   Mat          M, Mreuse;
191482094794SBarry Smith   MatScalar   *vwork, *aa;
1915ce94432eSBarry Smith   MPI_Comm     comm;
191629dcf524SDmitry Karpeev   IS           isrow_new, iscol_new;
191782094794SBarry Smith   Mat_SeqBAIJ *aij;
191882094794SBarry Smith 
191982094794SBarry Smith   PetscFunctionBegin;
19209566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
19219566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
19229566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
192329dcf524SDmitry Karpeev   /* The compression and expansion should be avoided. Doesn't point
192429dcf524SDmitry Karpeev      out errors, might change the indices, hence buggey */
19259566063dSJacob Faibussowitsch   PetscCall(ISCompressIndicesGeneral(mat->rmap->N, mat->rmap->n, mat->rmap->bs, 1, &isrow, &isrow_new));
1926864bd19bSPierre Jolivet   if (isrow == iscol) {
1927864bd19bSPierre Jolivet     iscol_new = isrow_new;
1928864bd19bSPierre Jolivet     PetscCall(PetscObjectReference((PetscObject)iscol_new));
1929864bd19bSPierre Jolivet   } else PetscCall(ISCompressIndicesGeneral(mat->cmap->N, mat->cmap->n, mat->cmap->bs, 1, &iscol, &iscol_new));
193082094794SBarry Smith 
193182094794SBarry Smith   if (call == MAT_REUSE_MATRIX) {
19329566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse));
19335f80ce2aSJacob Faibussowitsch     PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
1934fdfbdca6SPierre Jolivet     PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_REUSE_MATRIX, &Mreuse, sym));
193582094794SBarry Smith   } else {
1936fdfbdca6SPierre Jolivet     PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_INITIAL_MATRIX, &Mreuse, sym));
193782094794SBarry Smith   }
19389566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&isrow_new));
19399566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&iscol_new));
194082094794SBarry Smith   /*
194182094794SBarry Smith       m - number of local rows
194282094794SBarry Smith       n - number of columns (same on all processors)
194382094794SBarry Smith       rstart - first row in new global matrix generated
194482094794SBarry Smith   */
19459566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(mat, &bs));
19469566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Mreuse, &m, &n));
194782094794SBarry Smith   m = m / bs;
194882094794SBarry Smith   n = n / bs;
194982094794SBarry Smith 
195082094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
195157508eceSPierre Jolivet     aij = (Mat_SeqBAIJ *)Mreuse->data;
195282094794SBarry Smith     ii  = aij->i;
195382094794SBarry Smith     jj  = aij->j;
195482094794SBarry Smith 
195582094794SBarry Smith     /*
195682094794SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
195782094794SBarry Smith         portions of the matrix in order to do correct preallocation
195882094794SBarry Smith     */
195982094794SBarry Smith 
196082094794SBarry Smith     /* first get start and end of "diagonal" columns */
196182094794SBarry Smith     if (csize == PETSC_DECIDE) {
19629566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
196382094794SBarry Smith       if (mglobal == n * bs) { /* square matrix */
196482094794SBarry Smith         nlocal = m;
196582094794SBarry Smith       } else {
196682094794SBarry Smith         nlocal = n / size + ((n % size) > rank);
196782094794SBarry Smith       }
196882094794SBarry Smith     } else {
196982094794SBarry Smith       nlocal = csize / bs;
197082094794SBarry Smith     }
19719566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
197282094794SBarry Smith     rstart = rend - nlocal;
1973aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n);
197482094794SBarry Smith 
197582094794SBarry Smith     /* next, compute all the lengths */
19769566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(m + 1, &dlens, m + 1, &olens));
197782094794SBarry Smith     for (i = 0; i < m; i++) {
197882094794SBarry Smith       jend = ii[i + 1] - ii[i];
197982094794SBarry Smith       olen = 0;
198082094794SBarry Smith       dlen = 0;
198182094794SBarry Smith       for (j = 0; j < jend; j++) {
198282094794SBarry Smith         if (*jj < rstart || *jj >= rend) olen++;
198382094794SBarry Smith         else dlen++;
198482094794SBarry Smith         jj++;
198582094794SBarry Smith       }
198682094794SBarry Smith       olens[i] = olen;
198782094794SBarry Smith       dlens[i] = dlen;
198882094794SBarry Smith     }
19899566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
19909566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, bs * m, bs * nlocal, PETSC_DECIDE, bs * n));
1991fdfbdca6SPierre Jolivet     PetscCall(MatSetType(M, sym ? ((PetscObject)mat)->type_name : MATMPIBAIJ));
19929566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(M, bs, 0, dlens, 0, olens));
19939566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(M, bs, 0, dlens, 0, olens));
19949566063dSJacob Faibussowitsch     PetscCall(PetscFree2(dlens, olens));
199582094794SBarry Smith   } else {
199682094794SBarry Smith     PetscInt ml, nl;
199782094794SBarry Smith 
199882094794SBarry Smith     M = *newmat;
19999566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &ml, &nl));
20005f80ce2aSJacob Faibussowitsch     PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
20019566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
200282094794SBarry Smith     /*
200382094794SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
200482094794SBarry Smith        rather than the slower MatSetValues().
200582094794SBarry Smith     */
200682094794SBarry Smith     M->was_assembled = PETSC_TRUE;
200782094794SBarry Smith     M->assembled     = PETSC_FALSE;
200882094794SBarry Smith   }
20099566063dSJacob Faibussowitsch   PetscCall(MatSetOption(M, MAT_ROW_ORIENTED, PETSC_FALSE));
20109566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, &rend));
201157508eceSPierre Jolivet   aij = (Mat_SeqBAIJ *)Mreuse->data;
201282094794SBarry Smith   ii  = aij->i;
201382094794SBarry Smith   jj  = aij->j;
201482094794SBarry Smith   aa  = aij->a;
201582094794SBarry Smith   for (i = 0; i < m; i++) {
201682094794SBarry Smith     row   = rstart / bs + i;
201782094794SBarry Smith     nz    = ii[i + 1] - ii[i];
20189371c9d4SSatish Balay     cwork = jj;
20198e3a54c0SPierre Jolivet     jj    = PetscSafePointerPlusOffset(jj, nz);
20209371c9d4SSatish Balay     vwork = aa;
20218e3a54c0SPierre Jolivet     aa    = PetscSafePointerPlusOffset(aa, nz * bs * bs);
20229566063dSJacob Faibussowitsch     PetscCall(MatSetValuesBlocked_MPIBAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES));
202382094794SBarry Smith   }
202482094794SBarry Smith 
20259566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
20269566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
202782094794SBarry Smith   *newmat = M;
202882094794SBarry Smith 
202982094794SBarry Smith   /* save submatrix used in processor for next request */
203082094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
20319566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse));
20329566063dSJacob Faibussowitsch     PetscCall(PetscObjectDereference((PetscObject)Mreuse));
203382094794SBarry Smith   }
20343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
203582094794SBarry Smith }
203682094794SBarry Smith 
MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat * B)203766976f2fSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIBAIJ(Mat A, IS rowp, IS colp, Mat *B)
2038d71ae5a4SJacob Faibussowitsch {
203982094794SBarry Smith   MPI_Comm        comm, pcomm;
2040a0a83eb5SRémi Lacroix   PetscInt        clocal_size, nrows;
204182094794SBarry Smith   const PetscInt *rows;
2042dbf0e21dSBarry Smith   PetscMPIInt     size;
2043a0a83eb5SRémi Lacroix   IS              crowp, lcolp;
204482094794SBarry Smith 
204582094794SBarry Smith   PetscFunctionBegin;
20469566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
204782094794SBarry Smith   /* make a collective version of 'rowp' */
20489566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)rowp, &pcomm));
204982094794SBarry Smith   if (pcomm == comm) {
205082094794SBarry Smith     crowp = rowp;
205182094794SBarry Smith   } else {
20529566063dSJacob Faibussowitsch     PetscCall(ISGetSize(rowp, &nrows));
20539566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(rowp, &rows));
20549566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, nrows, rows, PETSC_COPY_VALUES, &crowp));
20559566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(rowp, &rows));
205682094794SBarry Smith   }
20579566063dSJacob Faibussowitsch   PetscCall(ISSetPermutation(crowp));
2058a0a83eb5SRémi Lacroix   /* make a local version of 'colp' */
20599566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)colp, &pcomm));
20609566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(pcomm, &size));
2061dbf0e21dSBarry Smith   if (size == 1) {
206282094794SBarry Smith     lcolp = colp;
206382094794SBarry Smith   } else {
20649566063dSJacob Faibussowitsch     PetscCall(ISAllGather(colp, &lcolp));
206582094794SBarry Smith   }
20669566063dSJacob Faibussowitsch   PetscCall(ISSetPermutation(lcolp));
206775f6568bSJed Brown   /* now we just get the submatrix */
20689566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(A, NULL, &clocal_size));
2069fdfbdca6SPierre Jolivet   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(A, crowp, lcolp, clocal_size, MAT_INITIAL_MATRIX, B, PETSC_FALSE));
2070a0a83eb5SRémi Lacroix   /* clean up */
207148a46eb9SPierre Jolivet   if (pcomm != comm) PetscCall(ISDestroy(&crowp));
207248a46eb9SPierre Jolivet   if (size > 1) PetscCall(ISDestroy(&lcolp));
20733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
207482094794SBarry Smith }
207582094794SBarry Smith 
MatGetGhosts_MPIBAIJ(Mat mat,PetscInt * nghosts,const PetscInt * ghosts[])207666976f2fSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[])
2077d71ae5a4SJacob Faibussowitsch {
20788c7482ecSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
20798c7482ecSBarry Smith   Mat_SeqBAIJ *B    = (Mat_SeqBAIJ *)baij->B->data;
20808c7482ecSBarry Smith 
20818c7482ecSBarry Smith   PetscFunctionBegin;
208226fbe8dcSKarl Rupp   if (nghosts) *nghosts = B->nbs;
208326fbe8dcSKarl Rupp   if (ghosts) *ghosts = baij->garray;
20843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
20858c7482ecSBarry Smith }
20868c7482ecSBarry Smith 
MatGetSeqNonzeroStructure_MPIBAIJ(Mat A,Mat * newmat)208766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A, Mat *newmat)
2088d71ae5a4SJacob Faibussowitsch {
2089f6d58c54SBarry Smith   Mat          B;
2090f6d58c54SBarry Smith   Mat_MPIBAIJ *a  = (Mat_MPIBAIJ *)A->data;
2091f6d58c54SBarry Smith   Mat_SeqBAIJ *ad = (Mat_SeqBAIJ *)a->A->data, *bd = (Mat_SeqBAIJ *)a->B->data;
2092f6d58c54SBarry Smith   Mat_SeqAIJ  *b;
2093f4259b30SLisandro Dalcin   PetscMPIInt  size, rank, *recvcounts = NULL, *displs = NULL;
2094f6d58c54SBarry Smith   PetscInt     sendcount, i, *rstarts = A->rmap->range, n, cnt, j, bs = A->rmap->bs;
2095f6d58c54SBarry Smith   PetscInt     m, *garray = a->garray, *lens, *jsendbuf, *a_jsendbuf, *b_jsendbuf;
2096f6d58c54SBarry Smith 
2097f6d58c54SBarry Smith   PetscFunctionBegin;
20989566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
20999566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank));
2100f6d58c54SBarry Smith 
21012ef1f0ffSBarry Smith   /*   Tell every processor the number of nonzeros per row  */
21029566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(A->rmap->N / bs, &lens));
2103ad540459SPierre Jolivet   for (i = A->rmap->rstart / bs; i < A->rmap->rend / bs; i++) lens[i] = ad->i[i - A->rmap->rstart / bs + 1] - ad->i[i - A->rmap->rstart / bs] + bd->i[i - A->rmap->rstart / bs + 1] - bd->i[i - A->rmap->rstart / bs];
21049566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(2 * size, &recvcounts));
2105f6d58c54SBarry Smith   displs = recvcounts + size;
2106f6d58c54SBarry Smith   for (i = 0; i < size; i++) {
21076497c311SBarry Smith     PetscCall(PetscMPIIntCast(A->rmap->range[i + 1] / bs - A->rmap->range[i] / bs, &recvcounts[i]));
21086497c311SBarry Smith     PetscCall(PetscMPIIntCast(A->rmap->range[i] / bs, &displs[i]));
2109f6d58c54SBarry Smith   }
21109566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, lens, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A)));
21112ef1f0ffSBarry Smith   /* Create the sequential matrix of the same type as the local block diagonal  */
21129566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &B));
21139566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(B, A->rmap->N / bs, A->cmap->N / bs, PETSC_DETERMINE, PETSC_DETERMINE));
21149566063dSJacob Faibussowitsch   PetscCall(MatSetType(B, MATSEQAIJ));
21159566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(B, 0, lens));
2116f6d58c54SBarry Smith   b = (Mat_SeqAIJ *)B->data;
2117f6d58c54SBarry Smith 
21182ef1f0ffSBarry Smith   /*     Copy my part of matrix column indices over  */
2119f6d58c54SBarry Smith   sendcount  = ad->nz + bd->nz;
2120f6d58c54SBarry Smith   jsendbuf   = b->j + b->i[rstarts[rank] / bs];
2121f6d58c54SBarry Smith   a_jsendbuf = ad->j;
2122f6d58c54SBarry Smith   b_jsendbuf = bd->j;
2123f6d58c54SBarry Smith   n          = A->rmap->rend / bs - A->rmap->rstart / bs;
2124f6d58c54SBarry Smith   cnt        = 0;
2125f6d58c54SBarry Smith   for (i = 0; i < n; i++) {
2126f6d58c54SBarry Smith     /* put in lower diagonal portion */
2127f6d58c54SBarry Smith     m = bd->i[i + 1] - bd->i[i];
2128f6d58c54SBarry Smith     while (m > 0) {
2129f6d58c54SBarry Smith       /* is it above diagonal (in bd (compressed) numbering) */
2130f6d58c54SBarry Smith       if (garray[*b_jsendbuf] > A->rmap->rstart / bs + i) break;
2131f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2132f6d58c54SBarry Smith       m--;
2133f6d58c54SBarry Smith     }
2134f6d58c54SBarry Smith 
2135f6d58c54SBarry Smith     /* put in diagonal portion */
2136ad540459SPierre Jolivet     for (j = ad->i[i]; j < ad->i[i + 1]; j++) jsendbuf[cnt++] = A->rmap->rstart / bs + *a_jsendbuf++;
2137f6d58c54SBarry Smith 
2138f6d58c54SBarry Smith     /* put in upper diagonal portion */
2139ad540459SPierre Jolivet     while (m-- > 0) jsendbuf[cnt++] = garray[*b_jsendbuf++];
2140f6d58c54SBarry Smith   }
21415f80ce2aSJacob Faibussowitsch   PetscCheck(cnt == sendcount, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Corrupted PETSc matrix: nz given %" PetscInt_FMT " actual nz %" PetscInt_FMT, sendcount, cnt);
2142f6d58c54SBarry Smith 
21432ef1f0ffSBarry Smith   /*  Gather all column indices to all processors  */
2144f6d58c54SBarry Smith   for (i = 0; i < size; i++) {
2145f6d58c54SBarry Smith     recvcounts[i] = 0;
2146ad540459SPierre Jolivet     for (j = A->rmap->range[i] / bs; j < A->rmap->range[i + 1] / bs; j++) recvcounts[i] += lens[j];
2147f6d58c54SBarry Smith   }
2148f6d58c54SBarry Smith   displs[0] = 0;
2149ad540459SPierre Jolivet   for (i = 1; i < size; i++) displs[i] = displs[i - 1] + recvcounts[i - 1];
21509566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, b->j, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A)));
21515804573cSPierre Jolivet   /*  Assemble the matrix into usable form (note numerical values not yet set)  */
2152f6d58c54SBarry Smith   /* set the b->ilen (length of each row) values */
21539566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(b->ilen, lens, A->rmap->N / bs));
2154f6d58c54SBarry Smith   /* set the b->i indices */
2155f6d58c54SBarry Smith   b->i[0] = 0;
2156ad540459SPierre Jolivet   for (i = 1; i <= A->rmap->N / bs; i++) b->i[i] = b->i[i - 1] + lens[i - 1];
21579566063dSJacob Faibussowitsch   PetscCall(PetscFree(lens));
21589566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
21599566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
21609566063dSJacob Faibussowitsch   PetscCall(PetscFree(recvcounts));
2161f6d58c54SBarry Smith 
2162b94d7dedSBarry Smith   PetscCall(MatPropagateSymmetryOptions(A, B));
2163f6d58c54SBarry Smith   *newmat = B;
21643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2165f6d58c54SBarry Smith }
2166f6d58c54SBarry Smith 
MatSOR_MPIBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)216766976f2fSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
2168d71ae5a4SJacob Faibussowitsch {
2169b1a666ecSBarry Smith   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data;
2170f4259b30SLisandro Dalcin   Vec          bb1 = NULL;
2171b1a666ecSBarry Smith 
2172b1a666ecSBarry Smith   PetscFunctionBegin;
2173b1a666ecSBarry Smith   if (flag == SOR_APPLY_UPPER) {
21749566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
21753ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2176b1a666ecSBarry Smith   }
2177b1a666ecSBarry Smith 
217848a46eb9SPierre Jolivet   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) PetscCall(VecDuplicate(bb, &bb1));
21794e980039SJed Brown 
2180b1a666ecSBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2181b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
21829566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2183b1a666ecSBarry Smith       its--;
2184b1a666ecSBarry Smith     }
2185b1a666ecSBarry Smith 
2186b1a666ecSBarry Smith     while (its--) {
21879566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
21889566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2189b1a666ecSBarry Smith 
2190b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
21919566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
21929566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
2193b1a666ecSBarry Smith 
2194b1a666ecSBarry Smith       /* local sweep */
21959566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx));
2196b1a666ecSBarry Smith     }
2197b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
2198b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
21999566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2200b1a666ecSBarry Smith       its--;
2201b1a666ecSBarry Smith     }
2202b1a666ecSBarry Smith     while (its--) {
22039566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
22049566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2205b1a666ecSBarry Smith 
2206b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
22079566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
22089566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
2209b1a666ecSBarry Smith 
2210b1a666ecSBarry Smith       /* local sweep */
22119566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx));
2212b1a666ecSBarry Smith     }
2213b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
2214b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
22159566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2216b1a666ecSBarry Smith       its--;
2217b1a666ecSBarry Smith     }
2218b1a666ecSBarry Smith     while (its--) {
22199566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
22209566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2221b1a666ecSBarry Smith 
2222b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
22239566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
22249566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
2225b1a666ecSBarry Smith 
2226b1a666ecSBarry Smith       /* local sweep */
22279566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx));
2228b1a666ecSBarry Smith     }
2229ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel version of SOR requested not supported");
2230b1a666ecSBarry Smith 
22319566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&bb1));
22323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2233b1a666ecSBarry Smith }
2234b1a666ecSBarry Smith 
MatGetColumnReductions_MPIBAIJ(Mat A,PetscInt type,PetscReal * reductions)223566976f2fSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIBAIJ(Mat A, PetscInt type, PetscReal *reductions)
2236d71ae5a4SJacob Faibussowitsch {
223747f7623dSRémi Lacroix   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)A->data;
2238a873a8cdSSam Reynolds   PetscInt     m, N, i, *garray = aij->garray;
223947f7623dSRémi Lacroix   PetscInt     ib, jb, bs = A->rmap->bs;
224047f7623dSRémi Lacroix   Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ *)aij->A->data;
224147f7623dSRémi Lacroix   MatScalar   *a_val = a_aij->a;
224247f7623dSRémi Lacroix   Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ *)aij->B->data;
224347f7623dSRémi Lacroix   MatScalar   *b_val = b_aij->a;
224447f7623dSRémi Lacroix   PetscReal   *work;
224547f7623dSRémi Lacroix 
224647f7623dSRémi Lacroix   PetscFunctionBegin;
22479566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &N));
22489566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(N, &work));
2249857cbf51SRichard Tran Mills   if (type == NORM_2) {
225047f7623dSRémi Lacroix     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
225147f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
225247f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
225347f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val);
225447f7623dSRémi Lacroix           a_val++;
225547f7623dSRémi Lacroix         }
225647f7623dSRémi Lacroix       }
225747f7623dSRémi Lacroix     }
225847f7623dSRémi Lacroix     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
225947f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
226047f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
226147f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val);
226247f7623dSRémi Lacroix           b_val++;
226347f7623dSRémi Lacroix         }
226447f7623dSRémi Lacroix       }
226547f7623dSRémi Lacroix     }
2266857cbf51SRichard Tran Mills   } else if (type == NORM_1) {
226747f7623dSRémi Lacroix     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
226847f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
226947f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
227047f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val);
227147f7623dSRémi Lacroix           a_val++;
227247f7623dSRémi Lacroix         }
227347f7623dSRémi Lacroix       }
227447f7623dSRémi Lacroix     }
227547f7623dSRémi Lacroix     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
227647f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
227747f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
227847f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val);
227947f7623dSRémi Lacroix           b_val++;
228047f7623dSRémi Lacroix         }
228147f7623dSRémi Lacroix       }
228247f7623dSRémi Lacroix     }
2283857cbf51SRichard Tran Mills   } else if (type == NORM_INFINITY) {
228447f7623dSRémi Lacroix     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
228547f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
228647f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
22876497c311SBarry Smith           PetscInt col = A->cmap->rstart + a_aij->j[i] * bs + jb;
228847f7623dSRémi Lacroix           work[col]    = PetscMax(PetscAbsScalar(*a_val), work[col]);
228947f7623dSRémi Lacroix           a_val++;
229047f7623dSRémi Lacroix         }
229147f7623dSRémi Lacroix       }
229247f7623dSRémi Lacroix     }
229347f7623dSRémi Lacroix     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
229447f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
229547f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
22966497c311SBarry Smith           PetscInt col = garray[b_aij->j[i]] * bs + jb;
229747f7623dSRémi Lacroix           work[col]    = PetscMax(PetscAbsScalar(*b_val), work[col]);
229847f7623dSRémi Lacroix           b_val++;
229947f7623dSRémi Lacroix         }
230047f7623dSRémi Lacroix       }
230147f7623dSRémi Lacroix     }
2302857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) {
2303a873a8cdSSam Reynolds     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
2304a873a8cdSSam Reynolds       for (jb = 0; jb < bs; jb++) {
2305a873a8cdSSam Reynolds         for (ib = 0; ib < bs; ib++) {
2306857cbf51SRichard Tran Mills           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val);
2307a873a8cdSSam Reynolds           a_val++;
2308a873a8cdSSam Reynolds         }
2309a873a8cdSSam Reynolds       }
2310a873a8cdSSam Reynolds     }
2311a873a8cdSSam Reynolds     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
2312a873a8cdSSam Reynolds       for (jb = 0; jb < bs; jb++) {
2313a873a8cdSSam Reynolds         for (ib = 0; ib < bs; ib++) {
2314857cbf51SRichard Tran Mills           work[garray[b_aij->j[i]] * bs + jb] += PetscRealPart(*b_val);
2315a873a8cdSSam Reynolds           b_val++;
2316a873a8cdSSam Reynolds         }
2317a873a8cdSSam Reynolds       }
2318a873a8cdSSam Reynolds     }
2319857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) {
2320857cbf51SRichard Tran Mills     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
2321857cbf51SRichard Tran Mills       for (jb = 0; jb < bs; jb++) {
2322857cbf51SRichard Tran Mills         for (ib = 0; ib < bs; ib++) {
2323857cbf51SRichard Tran Mills           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val);
2324857cbf51SRichard Tran Mills           a_val++;
2325857cbf51SRichard Tran Mills         }
2326857cbf51SRichard Tran Mills       }
2327857cbf51SRichard Tran Mills     }
2328857cbf51SRichard Tran Mills     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
2329857cbf51SRichard Tran Mills       for (jb = 0; jb < bs; jb++) {
2330857cbf51SRichard Tran Mills         for (ib = 0; ib < bs; ib++) {
2331857cbf51SRichard Tran Mills           work[garray[b_aij->j[i]] * bs + jb] += PetscImaginaryPart(*b_val);
2332857cbf51SRichard Tran Mills           b_val++;
2333857cbf51SRichard Tran Mills         }
2334857cbf51SRichard Tran Mills       }
2335857cbf51SRichard Tran Mills     }
2336857cbf51SRichard Tran Mills   } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type");
2337857cbf51SRichard Tran Mills   if (type == NORM_INFINITY) {
2338e91c04dfSPierre Jolivet     PetscCallMPI(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A)));
233947f7623dSRémi Lacroix   } else {
2340e91c04dfSPierre Jolivet     PetscCallMPI(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A)));
234147f7623dSRémi Lacroix   }
23429566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
2343857cbf51SRichard Tran Mills   if (type == NORM_2) {
2344a873a8cdSSam Reynolds     for (i = 0; i < N; i++) reductions[i] = PetscSqrtReal(reductions[i]);
2345857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
2346a873a8cdSSam Reynolds     for (i = 0; i < N; i++) reductions[i] /= m;
234747f7623dSRémi Lacroix   }
23483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
234947f7623dSRémi Lacroix }
235047f7623dSRémi Lacroix 
MatInvertBlockDiagonal_MPIBAIJ(Mat A,const PetscScalar ** values)235166976f2fSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A, const PetscScalar **values)
2352d71ae5a4SJacob Faibussowitsch {
2353bbead8a2SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
2354bbead8a2SBarry Smith 
2355bbead8a2SBarry Smith   PetscFunctionBegin;
23569566063dSJacob Faibussowitsch   PetscCall(MatInvertBlockDiagonal(a->A, values));
23577b6c816cSBarry Smith   A->factorerrortype             = a->A->factorerrortype;
23587b6c816cSBarry Smith   A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value;
23597b6c816cSBarry Smith   A->factorerror_zeropivot_row   = a->A->factorerror_zeropivot_row;
23603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2361bbead8a2SBarry Smith }
2362bbead8a2SBarry Smith 
MatShift_MPIBAIJ(Mat Y,PetscScalar a)236366976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPIBAIJ(Mat Y, PetscScalar a)
2364d71ae5a4SJacob Faibussowitsch {
23657d68702bSBarry Smith   Mat_MPIBAIJ *maij = (Mat_MPIBAIJ *)Y->data;
23666f33a894SBarry Smith   Mat_SeqBAIJ *aij  = (Mat_SeqBAIJ *)maij->A->data;
23677d68702bSBarry Smith 
23687d68702bSBarry Smith   PetscFunctionBegin;
23696f33a894SBarry Smith   if (!Y->preallocated) {
23709566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL));
23716f33a894SBarry Smith   } else if (!aij->nz) {
2372b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
23739566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL));
2374b83222d8SBarry Smith     aij->nonew = nonew;
23757d68702bSBarry Smith   }
23769566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
23773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23787d68702bSBarry Smith }
23798c7482ecSBarry Smith 
MatGetDiagonalBlock_MPIBAIJ(Mat A,Mat * a)238066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A, Mat *a)
2381d71ae5a4SJacob Faibussowitsch {
2382a5b7ff6bSBarry Smith   PetscFunctionBegin;
2383a5b7ff6bSBarry Smith   *a = ((Mat_MPIBAIJ *)A->data)->A;
23843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2385a5b7ff6bSBarry Smith }
2386a5b7ff6bSBarry Smith 
MatEliminateZeros_MPIBAIJ(Mat A,PetscBool keep)238717ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIBAIJ(Mat A, PetscBool keep)
238817ea310bSPierre Jolivet {
238917ea310bSPierre Jolivet   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
239017ea310bSPierre Jolivet 
239117ea310bSPierre Jolivet   PetscFunctionBegin;
239217ea310bSPierre Jolivet   PetscCall(MatEliminateZeros_SeqBAIJ(a->A, keep));        // possibly keep zero diagonal coefficients
239317ea310bSPierre Jolivet   PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients
239417ea310bSPierre Jolivet   PetscFunctionReturn(PETSC_SUCCESS);
239517ea310bSPierre Jolivet }
239617ea310bSPierre Jolivet 
23973964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ,
2398cc2dc46cSBarry Smith                                        MatGetRow_MPIBAIJ,
2399cc2dc46cSBarry Smith                                        MatRestoreRow_MPIBAIJ,
2400cc2dc46cSBarry Smith                                        MatMult_MPIBAIJ,
240197304618SKris Buschelman                                        /* 4*/ MatMultAdd_MPIBAIJ,
24027c922b88SBarry Smith                                        MatMultTranspose_MPIBAIJ,
24037c922b88SBarry Smith                                        MatMultTransposeAdd_MPIBAIJ,
2404f4259b30SLisandro Dalcin                                        NULL,
2405f4259b30SLisandro Dalcin                                        NULL,
2406f4259b30SLisandro Dalcin                                        NULL,
2407f4259b30SLisandro Dalcin                                        /*10*/ NULL,
2408f4259b30SLisandro Dalcin                                        NULL,
2409f4259b30SLisandro Dalcin                                        NULL,
2410b1a666ecSBarry Smith                                        MatSOR_MPIBAIJ,
2411cc2dc46cSBarry Smith                                        MatTranspose_MPIBAIJ,
241297304618SKris Buschelman                                        /*15*/ MatGetInfo_MPIBAIJ,
24137fc3c18eSBarry Smith                                        MatEqual_MPIBAIJ,
2414cc2dc46cSBarry Smith                                        MatGetDiagonal_MPIBAIJ,
2415cc2dc46cSBarry Smith                                        MatDiagonalScale_MPIBAIJ,
2416cc2dc46cSBarry Smith                                        MatNorm_MPIBAIJ,
241797304618SKris Buschelman                                        /*20*/ MatAssemblyBegin_MPIBAIJ,
2418cc2dc46cSBarry Smith                                        MatAssemblyEnd_MPIBAIJ,
2419cc2dc46cSBarry Smith                                        MatSetOption_MPIBAIJ,
2420cc2dc46cSBarry Smith                                        MatZeroEntries_MPIBAIJ,
2421d519adbfSMatthew Knepley                                        /*24*/ MatZeroRows_MPIBAIJ,
2422f4259b30SLisandro Dalcin                                        NULL,
2423f4259b30SLisandro Dalcin                                        NULL,
2424f4259b30SLisandro Dalcin                                        NULL,
2425f4259b30SLisandro Dalcin                                        NULL,
242626cec326SBarry Smith                                        /*29*/ MatSetUp_MPI_Hash,
2427f4259b30SLisandro Dalcin                                        NULL,
2428f4259b30SLisandro Dalcin                                        NULL,
2429a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPIBAIJ,
2430f4259b30SLisandro Dalcin                                        NULL,
2431d519adbfSMatthew Knepley                                        /*34*/ MatDuplicate_MPIBAIJ,
2432f4259b30SLisandro Dalcin                                        NULL,
2433f4259b30SLisandro Dalcin                                        NULL,
2434f4259b30SLisandro Dalcin                                        NULL,
2435f4259b30SLisandro Dalcin                                        NULL,
2436d519adbfSMatthew Knepley                                        /*39*/ MatAXPY_MPIBAIJ,
24377dae84e0SHong Zhang                                        MatCreateSubMatrices_MPIBAIJ,
2438cc2dc46cSBarry Smith                                        MatIncreaseOverlap_MPIBAIJ,
2439cc2dc46cSBarry Smith                                        MatGetValues_MPIBAIJ,
24403c896bc6SHong Zhang                                        MatCopy_MPIBAIJ,
2441f4259b30SLisandro Dalcin                                        /*44*/ NULL,
2442cc2dc46cSBarry Smith                                        MatScale_MPIBAIJ,
24437d68702bSBarry Smith                                        MatShift_MPIBAIJ,
2444f4259b30SLisandro Dalcin                                        NULL,
24456f0a72daSMatthew G. Knepley                                        MatZeroRowsColumns_MPIBAIJ,
2446f4259b30SLisandro Dalcin                                        /*49*/ NULL,
2447f4259b30SLisandro Dalcin                                        NULL,
2448f4259b30SLisandro Dalcin                                        NULL,
2449f4259b30SLisandro Dalcin                                        NULL,
2450f4259b30SLisandro Dalcin                                        NULL,
245193dfae19SHong Zhang                                        /*54*/ MatFDColoringCreate_MPIXAIJ,
2452f4259b30SLisandro Dalcin                                        NULL,
2453cc2dc46cSBarry Smith                                        MatSetUnfactored_MPIBAIJ,
245482094794SBarry Smith                                        MatPermute_MPIBAIJ,
2455cc2dc46cSBarry Smith                                        MatSetValuesBlocked_MPIBAIJ,
24567dae84e0SHong Zhang                                        /*59*/ MatCreateSubMatrix_MPIBAIJ,
2457f14a1c24SBarry Smith                                        MatDestroy_MPIBAIJ,
2458f14a1c24SBarry Smith                                        MatView_MPIBAIJ,
2459f4259b30SLisandro Dalcin                                        NULL,
2460f4259b30SLisandro Dalcin                                        NULL,
2461f4259b30SLisandro Dalcin                                        /*64*/ NULL,
2462f4259b30SLisandro Dalcin                                        NULL,
2463f4259b30SLisandro Dalcin                                        NULL,
2464f4259b30SLisandro Dalcin                                        NULL,
24658bb0f5c6SPierre Jolivet                                        MatGetRowMaxAbs_MPIBAIJ,
24668bb0f5c6SPierre Jolivet                                        /*69*/ NULL,
2467f4259b30SLisandro Dalcin                                        NULL,
2468f4259b30SLisandro Dalcin                                        NULL,
2469f6d58c54SBarry Smith                                        MatFDColoringApply_BAIJ,
2470f4259b30SLisandro Dalcin                                        NULL,
24718bb0f5c6SPierre Jolivet                                        /*74*/ NULL,
2472f4259b30SLisandro Dalcin                                        NULL,
2473f4259b30SLisandro Dalcin                                        NULL,
2474f4259b30SLisandro Dalcin                                        NULL,
24755bba2384SShri Abhyankar                                        MatLoad_MPIBAIJ,
24768bb0f5c6SPierre Jolivet                                        /*79*/ NULL,
24778bb0f5c6SPierre Jolivet                                        NULL,
24788bb0f5c6SPierre Jolivet                                        NULL,
24798bb0f5c6SPierre Jolivet                                        NULL,
24808bb0f5c6SPierre Jolivet                                        NULL,
2481f4259b30SLisandro Dalcin                                        /*84*/ NULL,
2482f4259b30SLisandro Dalcin                                        NULL,
2483f4259b30SLisandro Dalcin                                        NULL,
2484f4259b30SLisandro Dalcin                                        NULL,
2485f4259b30SLisandro Dalcin                                        NULL,
2486f4259b30SLisandro Dalcin                                        /*89*/ NULL,
2487f4259b30SLisandro Dalcin                                        NULL,
2488f4259b30SLisandro Dalcin                                        NULL,
2489f4259b30SLisandro Dalcin                                        NULL,
24908bb0f5c6SPierre Jolivet                                        MatConjugate_MPIBAIJ,
2491f4259b30SLisandro Dalcin                                        /*94*/ NULL,
2492f4259b30SLisandro Dalcin                                        NULL,
24938bb0f5c6SPierre Jolivet                                        MatRealPart_MPIBAIJ,
24948bb0f5c6SPierre Jolivet                                        MatImaginaryPart_MPIBAIJ,
2495f4259b30SLisandro Dalcin                                        NULL,
2496f4259b30SLisandro Dalcin                                        /*99*/ NULL,
2497f4259b30SLisandro Dalcin                                        NULL,
2498f4259b30SLisandro Dalcin                                        NULL,
2499f4259b30SLisandro Dalcin                                        NULL,
2500f4259b30SLisandro Dalcin                                        NULL,
2501421480d9SBarry Smith                                        /*104*/ MatGetSeqNonzeroStructure_MPIBAIJ,
25028bb0f5c6SPierre Jolivet                                        NULL,
25038bb0f5c6SPierre Jolivet                                        MatGetGhosts_MPIBAIJ,
2504f4259b30SLisandro Dalcin                                        NULL,
2505421480d9SBarry Smith                                        NULL,
2506f4259b30SLisandro Dalcin                                        /*109*/ NULL,
2507f4259b30SLisandro Dalcin                                        NULL,
2508f4259b30SLisandro Dalcin                                        NULL,
2509f4259b30SLisandro Dalcin                                        NULL,
2510421480d9SBarry Smith                                        MatGetMultiProcBlock_MPIBAIJ,
2511421480d9SBarry Smith                                        /*114*/ NULL,
25128bb0f5c6SPierre Jolivet                                        MatGetColumnReductions_MPIBAIJ,
25138bb0f5c6SPierre Jolivet                                        MatInvertBlockDiagonal_MPIBAIJ,
2514f4259b30SLisandro Dalcin                                        NULL,
2515421480d9SBarry Smith                                        NULL,
2516f4259b30SLisandro Dalcin                                        /*119*/ NULL,
2517f4259b30SLisandro Dalcin                                        NULL,
2518f4259b30SLisandro Dalcin                                        NULL,
2519f4259b30SLisandro Dalcin                                        NULL,
25208bb0f5c6SPierre Jolivet                                        NULL,
2521f4259b30SLisandro Dalcin                                        /*124*/ NULL,
2522f4259b30SLisandro Dalcin                                        NULL,
25238bb0f5c6SPierre Jolivet                                        MatSetBlockSizes_Default,
2524f4259b30SLisandro Dalcin                                        NULL,
2525421480d9SBarry Smith                                        MatFDColoringSetUp_MPIXAIJ,
2526421480d9SBarry Smith                                        /*129*/ NULL,
25278bb0f5c6SPierre Jolivet                                        MatCreateMPIMatConcatenateSeqMat_MPIBAIJ,
2528f4259b30SLisandro Dalcin                                        NULL,
2529f4259b30SLisandro Dalcin                                        NULL,
2530421480d9SBarry Smith                                        NULL,
2531f4259b30SLisandro Dalcin                                        /*134*/ NULL,
2532f4259b30SLisandro Dalcin                                        NULL,
2533eede4a3fSMark Adams                                        MatEliminateZeros_MPIBAIJ,
25344cc2b5b5SPierre Jolivet                                        MatGetRowSumAbs_MPIBAIJ,
253542ce410bSJunchao Zhang                                        NULL,
2536421480d9SBarry Smith                                        /*139*/ NULL,
253742ce410bSJunchao Zhang                                        NULL,
253803db1824SAlex Lindsay                                        MatCopyHashToXAIJ_MPI_Hash,
2539c2be7ffeSStefano Zampini                                        NULL,
254003db1824SAlex Lindsay                                        NULL};
254179bdfe76SSatish Balay 
2542cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *);
2543c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *);
2544d94109b8SHong Zhang 
MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])254566976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[])
2546d71ae5a4SJacob Faibussowitsch {
2547b8d659d7SLisandro Dalcin   PetscInt        m, rstart, cstart, cend;
2548f4259b30SLisandro Dalcin   PetscInt        i, j, dlen, olen, nz, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL;
2549f4259b30SLisandro Dalcin   const PetscInt *JJ          = NULL;
2550f4259b30SLisandro Dalcin   PetscScalar    *values      = NULL;
2551d47bf9aaSJed Brown   PetscBool       roworiented = ((Mat_MPIBAIJ *)B->data)->roworiented;
25523bd0feecSPierre Jolivet   PetscBool       nooffprocentries;
2553aac34f13SBarry Smith 
2554aac34f13SBarry Smith   PetscFunctionBegin;
25559566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->rmap, bs));
25569566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->cmap, bs));
25579566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
25589566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
25599566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
2560d0f46423SBarry Smith   m      = B->rmap->n / bs;
2561d0f46423SBarry Smith   rstart = B->rmap->rstart / bs;
2562d0f46423SBarry Smith   cstart = B->cmap->rstart / bs;
2563d0f46423SBarry Smith   cend   = B->cmap->rend / bs;
2564b8d659d7SLisandro Dalcin 
25655f80ce2aSJacob Faibussowitsch   PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]);
25669566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz));
2567aac34f13SBarry Smith   for (i = 0; i < m; i++) {
2568cf12db73SBarry Smith     nz = ii[i + 1] - ii[i];
25695f80ce2aSJacob Faibussowitsch     PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz);
2570b8d659d7SLisandro Dalcin     nz_max = PetscMax(nz_max, nz);
257137cd3c0dSBarry Smith     dlen   = 0;
257237cd3c0dSBarry Smith     olen   = 0;
2573cf12db73SBarry Smith     JJ     = jj + ii[i];
2574b8d659d7SLisandro Dalcin     for (j = 0; j < nz; j++) {
257537cd3c0dSBarry Smith       if (*JJ < cstart || *JJ >= cend) olen++;
257637cd3c0dSBarry Smith       else dlen++;
2577aac34f13SBarry Smith       JJ++;
2578aac34f13SBarry Smith     }
257937cd3c0dSBarry Smith     d_nnz[i] = dlen;
258037cd3c0dSBarry Smith     o_nnz[i] = olen;
2581aac34f13SBarry Smith   }
25829566063dSJacob Faibussowitsch   PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz));
25839566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
2584aac34f13SBarry Smith 
2585b8d659d7SLisandro Dalcin   values = (PetscScalar *)V;
258648a46eb9SPierre Jolivet   if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values));
2587b8d659d7SLisandro Dalcin   for (i = 0; i < m; i++) {
2588b8d659d7SLisandro Dalcin     PetscInt        row   = i + rstart;
2589cf12db73SBarry Smith     PetscInt        ncols = ii[i + 1] - ii[i];
2590cf12db73SBarry Smith     const PetscInt *icols = jj + ii[i];
2591bb80cfbbSStefano Zampini     if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2592cf12db73SBarry Smith       const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0);
25939566063dSJacob Faibussowitsch       PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES));
25943adadaf3SJed Brown     } else { /* block ordering does not match so we can only insert one block at a time. */
25953adadaf3SJed Brown       PetscInt j;
25963adadaf3SJed Brown       for (j = 0; j < ncols; j++) {
25973adadaf3SJed Brown         const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0);
25989566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES));
25993adadaf3SJed Brown       }
26003adadaf3SJed Brown     }
2601aac34f13SBarry Smith   }
2602aac34f13SBarry Smith 
26039566063dSJacob Faibussowitsch   if (!V) PetscCall(PetscFree(values));
26043bd0feecSPierre Jolivet   nooffprocentries    = B->nooffprocentries;
26053bd0feecSPierre Jolivet   B->nooffprocentries = PETSC_TRUE;
26069566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
26079566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
26083bd0feecSPierre Jolivet   B->nooffprocentries = nooffprocentries;
26093bd0feecSPierre Jolivet 
26109566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
26113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2612aac34f13SBarry Smith }
2613aac34f13SBarry Smith 
2614aac34f13SBarry Smith /*@C
261511a5261eSBarry Smith   MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATBAIJ` format using the given nonzero structure and (optional) numerical values
2616aac34f13SBarry Smith 
2617d083f849SBarry Smith   Collective
2618aac34f13SBarry Smith 
2619aac34f13SBarry Smith   Input Parameters:
26201c4f3114SJed Brown + B  - the matrix
2621dfb205c3SBarry Smith . bs - the block size
262220f4b53cSBarry Smith . i  - the indices into `j` for the start of each local row (starts with zero)
2623aac34f13SBarry Smith . j  - the column indices for each local row (starts with zero) these must be sorted for each row
2624d8a51d2aSBarry Smith - v  - optional values in the matrix, use `NULL` if not provided
2625aac34f13SBarry Smith 
2626664954b6SBarry Smith   Level: advanced
2627aac34f13SBarry Smith 
262895452b02SPatrick Sanan   Notes:
2629d8a51d2aSBarry Smith   The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc;
2630d8a51d2aSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `v` after you have
2631d8a51d2aSBarry Smith   called this routine.
2632d8a51d2aSBarry Smith 
263311a5261eSBarry Smith   The order of the entries in values is specified by the `MatOption` `MAT_ROW_ORIENTED`.  For example, C programs
263411a5261eSBarry Smith   may want to use the default `MAT_ROW_ORIENTED` with value `PETSC_TRUE` and use an array v[nnz][bs][bs] where the second index is
26353adadaf3SJed Brown   over rows within a block and the last index is over columns within a block row.  Fortran programs will likely set
263611a5261eSBarry Smith   `MAT_ROW_ORIENTED` with value `PETSC_FALSE` and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a
26373adadaf3SJed Brown   block column and the second index is over columns within a block.
26383adadaf3SJed Brown 
2639664954b6SBarry Smith   Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well
2640664954b6SBarry Smith 
26417d2c085eSPierre Jolivet .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`, `MatCreateMPIBAIJWithArrays()`, `MATMPIBAIJ`
2642aac34f13SBarry Smith @*/
MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[],const PetscScalar v[])2643d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
2644d71ae5a4SJacob Faibussowitsch {
2645aac34f13SBarry Smith   PetscFunctionBegin;
26466ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
26476ba663aaSJed Brown   PetscValidType(B, 1);
26486ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B, bs, 2);
2649cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v));
26503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2651aac34f13SBarry Smith }
2652aac34f13SBarry Smith 
MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt * d_nnz,PetscInt o_nz,const PetscInt * o_nnz)2653d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz)
2654d71ae5a4SJacob Faibussowitsch {
2655ad79cf63SBarry Smith   Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data;
2656535b19f3SBarry Smith   PetscInt     i;
26575d2a9ed1SStefano Zampini   PetscMPIInt  size;
2658a23d5eceSKris Buschelman 
2659a23d5eceSKris Buschelman   PetscFunctionBegin;
2660ad79cf63SBarry Smith   if (B->hash_active) {
2661aea10558SJacob Faibussowitsch     B->ops[0]      = b->cops;
2662ad79cf63SBarry Smith     B->hash_active = PETSC_FALSE;
2663ad79cf63SBarry Smith   }
2664ad79cf63SBarry Smith   if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash));
266558b7e2c1SStefano Zampini   PetscCall(MatSetBlockSize(B, bs));
26669566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
26679566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
26689566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
2669899cda47SBarry Smith 
2670a23d5eceSKris Buschelman   if (d_nnz) {
2671ad540459SPierre Jolivet     for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(d_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "d_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, d_nnz[i]);
2672a23d5eceSKris Buschelman   }
2673a23d5eceSKris Buschelman   if (o_nnz) {
2674ad540459SPierre Jolivet     for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(o_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "o_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, o_nnz[i]);
2675a23d5eceSKris Buschelman   }
2676a23d5eceSKris Buschelman 
2677a23d5eceSKris Buschelman   b->bs2 = bs * bs;
2678d0f46423SBarry Smith   b->mbs = B->rmap->n / bs;
2679d0f46423SBarry Smith   b->nbs = B->cmap->n / bs;
2680d0f46423SBarry Smith   b->Mbs = B->rmap->N / bs;
2681d0f46423SBarry Smith   b->Nbs = B->cmap->N / bs;
2682a23d5eceSKris Buschelman 
2683ad540459SPierre Jolivet   for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs;
2684d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart / bs;
2685d0f46423SBarry Smith   b->rendbs   = B->rmap->rend / bs;
2686d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart / bs;
2687d0f46423SBarry Smith   b->cendbs   = B->cmap->rend / bs;
2688a23d5eceSKris Buschelman 
2689cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2690eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2691cb7b82ddSBarry Smith #else
26929566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2693cb7b82ddSBarry Smith #endif
26949566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
26959566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
26969566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2697cb7b82ddSBarry Smith 
26989566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
2699c508b908SBarry Smith 
2700c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->B);
27019566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
27029566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
27039566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
27049566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQBAIJ));
2705c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->B);
2706cb7b82ddSBarry Smith 
2707c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->A);
2708ad79cf63SBarry Smith   PetscCall(MatDestroy(&b->A));
27099566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
27109566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
27119566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->A, MATSEQBAIJ));
2712c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->A);
2713a23d5eceSKris Buschelman 
27149566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->A, bs, d_nz, d_nnz));
27159566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz));
2716526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2717cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
2718cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
27193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2720a23d5eceSKris Buschelman }
2721a23d5eceSKris Buschelman 
27227087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat, Vec);
27237087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat, PetscReal);
27245bf65638SKris Buschelman 
MatConvert_MPIBAIJ_MPIAdj(Mat B,MatType newtype,MatReuse reuse,Mat * adj)2725d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype, MatReuse reuse, Mat *adj)
2726d71ae5a4SJacob Faibussowitsch {
272782094794SBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ *)B->data;
272882094794SBarry Smith   Mat_SeqBAIJ    *d = (Mat_SeqBAIJ *)b->A->data, *o = (Mat_SeqBAIJ *)b->B->data;
272982094794SBarry Smith   PetscInt        M = B->rmap->n / B->rmap->bs, i, *ii, *jj, cnt, j, k, rstart = B->rmap->rstart / B->rmap->bs;
273082094794SBarry Smith   const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray;
273182094794SBarry Smith 
273282094794SBarry Smith   PetscFunctionBegin;
27339566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(M + 1, &ii));
273482094794SBarry Smith   ii[0] = 0;
273582094794SBarry Smith   for (i = 0; i < M; i++) {
273608401ef6SPierre Jolivet     PetscCheck((id[i + 1] - id[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, id[i], id[i + 1]);
273708401ef6SPierre Jolivet     PetscCheck((io[i + 1] - io[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, io[i], io[i + 1]);
273882094794SBarry Smith     ii[i + 1] = ii[i] + id[i + 1] - id[i] + io[i + 1] - io[i];
27395ee9ba1cSJed Brown     /* remove one from count of matrix has diagonal */
27405ee9ba1cSJed Brown     for (j = id[i]; j < id[i + 1]; j++) {
27419371c9d4SSatish Balay       if (jd[j] == i) {
27429371c9d4SSatish Balay         ii[i + 1]--;
27439371c9d4SSatish Balay         break;
27449371c9d4SSatish Balay       }
27455ee9ba1cSJed Brown     }
274682094794SBarry Smith   }
27479566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ii[M], &jj));
274882094794SBarry Smith   cnt = 0;
274982094794SBarry Smith   for (i = 0; i < M; i++) {
275082094794SBarry Smith     for (j = io[i]; j < io[i + 1]; j++) {
275182094794SBarry Smith       if (garray[jo[j]] > rstart) break;
275282094794SBarry Smith       jj[cnt++] = garray[jo[j]];
275382094794SBarry Smith     }
275482094794SBarry Smith     for (k = id[i]; k < id[i + 1]; k++) {
2755ad540459SPierre Jolivet       if (jd[k] != i) jj[cnt++] = rstart + jd[k];
275682094794SBarry Smith     }
2757ad540459SPierre Jolivet     for (; j < io[i + 1]; j++) jj[cnt++] = garray[jo[j]];
275882094794SBarry Smith   }
27599566063dSJacob Faibussowitsch   PetscCall(MatCreateMPIAdj(PetscObjectComm((PetscObject)B), M, B->cmap->N / B->rmap->bs, ii, jj, NULL, adj));
27603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
276182094794SBarry Smith }
276282094794SBarry Smith 
2763c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
276462471d69SBarry Smith 
2765cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType, MatReuse, Mat *);
2766b2573a8aSBarry Smith 
MatConvert_MPIBAIJ_MPIAIJ(Mat A,MatType newtype,MatReuse reuse,Mat * newmat)2767d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
2768d71ae5a4SJacob Faibussowitsch {
276962471d69SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
277085a69837SSatish Balay   Mat_MPIAIJ  *b;
27715f80ce2aSJacob Faibussowitsch   Mat          B;
277262471d69SBarry Smith 
277362471d69SBarry Smith   PetscFunctionBegin;
27745f80ce2aSJacob Faibussowitsch   PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled");
277562471d69SBarry Smith 
27760f6d62edSLisandro Dalcin   if (reuse == MAT_REUSE_MATRIX) {
27770f6d62edSLisandro Dalcin     B = *newmat;
27780f6d62edSLisandro Dalcin   } else {
27799566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
27809566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATMPIAIJ));
27819566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N));
27829566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs));
27839566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(B, 0, NULL));
27849566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, NULL, 0, NULL));
27850f6d62edSLisandro Dalcin   }
278662471d69SBarry Smith   b = (Mat_MPIAIJ *)B->data;
278762471d69SBarry Smith 
27880f6d62edSLisandro Dalcin   if (reuse == MAT_REUSE_MATRIX) {
27899566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A));
27909566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B));
27910f6d62edSLisandro Dalcin   } else {
27927c612885SStefano Zampini     PetscInt   *garray = a->garray;
27937c612885SStefano Zampini     Mat_SeqAIJ *bB;
27947c612885SStefano Zampini     PetscInt    bs, nnz;
27959566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&b->A));
27969566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&b->B));
27977c612885SStefano Zampini     /* just clear out the data structure */
2798eb14dd14SAlex Lindsay     PetscCall(MatDisAssemble_MPIAIJ(B, PETSC_FALSE));
27999566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A));
28009566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B));
28017c612885SStefano Zampini 
28027c612885SStefano Zampini     /* Global numbering for b->B columns */
28037c612885SStefano Zampini     bB  = (Mat_SeqAIJ *)b->B->data;
28047c612885SStefano Zampini     bs  = A->rmap->bs;
28057c612885SStefano Zampini     nnz = bB->i[A->rmap->n];
28067c612885SStefano Zampini     for (PetscInt k = 0; k < nnz; k++) {
28077c612885SStefano Zampini       PetscInt bj = bB->j[k] / bs;
28087c612885SStefano Zampini       PetscInt br = bB->j[k] % bs;
28097c612885SStefano Zampini       bB->j[k]    = garray[bj] * bs + br;
28107c612885SStefano Zampini     }
28110f6d62edSLisandro Dalcin   }
2812b91bea6bSPierre Jolivet   PetscCall(MatSetOption(B, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
28139566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
28149566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
2815b91bea6bSPierre Jolivet   PetscCall(MatSetOption(B, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
28160f6d62edSLisandro Dalcin 
2817511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
28189566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A, &B));
281962471d69SBarry Smith   } else {
282062471d69SBarry Smith     *newmat = B;
282162471d69SBarry Smith   }
28223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
282362471d69SBarry Smith }
282462471d69SBarry Smith 
28250bad9183SKris Buschelman /*MC
2826fafad747SKris Buschelman    MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices.
28270bad9183SKris Buschelman 
28280bad9183SKris Buschelman    Options Database Keys:
282911a5261eSBarry Smith + -mat_type mpibaij - sets the matrix type to `MATMPIBAIJ` during a call to `MatSetFromOptions()`
28308c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix
28316679dcc1SBarry Smith . -mat_baij_mult_version version - indicate the version of the matrix-vector product to use  (0 often indicates using BLAS)
283267b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor
28330bad9183SKris Buschelman 
28340bad9183SKris Buschelman    Level: beginner
28350cd7f59aSBarry Smith 
283611a5261eSBarry Smith    Note:
28375e0ad47dSPierre Jolivet     `MatSetOption(A, MAT_STRUCTURE_ONLY, PETSC_TRUE)` may be called for this matrix type. In this no
283811a5261eSBarry Smith     space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored
28390bad9183SKris Buschelman 
28405e0ad47dSPierre Jolivet .seealso: `Mat`, `MATBAIJ`, `MATSEQBAIJ`, `MatCreateBAIJ`
28410bad9183SKris Buschelman M*/
28420bad9183SKris Buschelman 
2843cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat, MatType, MatReuse, Mat *);
2844c0cdd4a1SDahai Guo 
MatCreate_MPIBAIJ(Mat B)2845d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B)
2846d71ae5a4SJacob Faibussowitsch {
2847273d9f13SBarry Smith   Mat_MPIBAIJ *b;
284894ae4db5SBarry Smith   PetscBool    flg = PETSC_FALSE;
2849273d9f13SBarry Smith 
2850273d9f13SBarry Smith   PetscFunctionBegin;
28514dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
285282502324SSatish Balay   B->data      = (void *)b;
2853aea10558SJacob Faibussowitsch   B->ops[0]    = MatOps_Values;
2854273d9f13SBarry Smith   B->assembled = PETSC_FALSE;
2855273d9f13SBarry Smith 
2856273d9f13SBarry Smith   B->insertmode = NOT_SET_VALUES;
28579566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
28589566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size));
2859273d9f13SBarry Smith 
2860273d9f13SBarry Smith   /* build local table of row and column ownerships */
28619566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(b->size + 1, &b->rangebs));
2862273d9f13SBarry Smith 
2863273d9f13SBarry Smith   /* build cache for off array entries formed */
28649566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
286526fbe8dcSKarl Rupp 
2866273d9f13SBarry Smith   b->donotstash  = PETSC_FALSE;
28670298fd71SBarry Smith   b->colmap      = NULL;
28680298fd71SBarry Smith   b->garray      = NULL;
2869273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
2870273d9f13SBarry Smith 
2871273d9f13SBarry Smith   /* stuff used in block assembly */
2872f4259b30SLisandro Dalcin   b->barray = NULL;
2873273d9f13SBarry Smith 
2874273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
2875f4259b30SLisandro Dalcin   b->lvec  = NULL;
2876f4259b30SLisandro Dalcin   b->Mvctx = NULL;
2877273d9f13SBarry Smith 
2878273d9f13SBarry Smith   /* stuff for MatGetRow() */
2879f4259b30SLisandro Dalcin   b->rowindices   = NULL;
2880f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
2881273d9f13SBarry Smith   b->getrowactive = PETSC_FALSE;
2882273d9f13SBarry Smith 
2883273d9f13SBarry Smith   /* hash table stuff */
2884f4259b30SLisandro Dalcin   b->ht           = NULL;
2885f4259b30SLisandro Dalcin   b->hd           = NULL;
2886273d9f13SBarry Smith   b->ht_size      = 0;
2887273d9f13SBarry Smith   b->ht_flag      = PETSC_FALSE;
2888273d9f13SBarry Smith   b->ht_fact      = 0;
2889273d9f13SBarry Smith   b->ht_total_ct  = 0;
2890273d9f13SBarry Smith   b->ht_insert_ct = 0;
2891273d9f13SBarry Smith 
28927dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
28937a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
28947a868f3eSHong Zhang 
28959566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiadj_C", MatConvert_MPIBAIJ_MPIAdj));
28969566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiaij_C", MatConvert_MPIBAIJ_MPIAIJ));
28979566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpisbaij_C", MatConvert_MPIBAIJ_MPISBAIJ));
28987ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
28999566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_hypre_C", MatConvert_AIJ_HYPRE));
29007ea3e4caSstefano_zampini #endif
29019566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIBAIJ));
29029566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIBAIJ));
29039566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocation_C", MatMPIBAIJSetPreallocation_MPIBAIJ));
29049566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocationCSR_C", MatMPIBAIJSetPreallocationCSR_MPIBAIJ));
29059566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIBAIJ));
29069566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetHashTableFactor_C", MatSetHashTableFactor_MPIBAIJ));
29079566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_is_C", MatConvert_XAIJ_IS));
29089566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIBAIJ));
290994ae4db5SBarry Smith 
2910d0609cedSBarry Smith   PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPIBAIJ matrix 1", "Mat");
29119566063dSJacob Faibussowitsch   PetscCall(PetscOptionsName("-mat_use_hash_table", "Use hash table to save time in constructing matrix", "MatSetOption", &flg));
291294ae4db5SBarry Smith   if (flg) {
291394ae4db5SBarry Smith     PetscReal fact = 1.39;
29149566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE));
29159566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL));
291694ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
29179566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetHashTableFactor(B, fact));
29189566063dSJacob Faibussowitsch     PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact));
291994ae4db5SBarry Smith   }
2920d0609cedSBarry Smith   PetscOptionsEnd();
29213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2922273d9f13SBarry Smith }
2923273d9f13SBarry Smith 
29242920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
2925209238afSKris Buschelman /*MC
2926002d173eSKris Buschelman    MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices.
2927209238afSKris Buschelman 
292811a5261eSBarry Smith    This matrix type is identical to `MATSEQBAIJ` when constructed with a single process communicator,
292911a5261eSBarry Smith    and `MATMPIBAIJ` otherwise.
2930209238afSKris Buschelman 
2931209238afSKris Buschelman    Options Database Keys:
293211a5261eSBarry Smith . -mat_type baij - sets the matrix type to `MATBAIJ` during a call to `MatSetFromOptions()`
2933209238afSKris Buschelman 
2934209238afSKris Buschelman   Level: beginner
2935209238afSKris Buschelman 
293667be906fSBarry Smith .seealso: `Mat`, `MatCreateBAIJ()`, `MATSEQBAIJ`, `MATMPIBAIJ`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`
2937209238afSKris Buschelman M*/
2938209238afSKris Buschelman 
29395d83a8b1SBarry Smith /*@
294011a5261eSBarry Smith   MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in `MATMPIBAIJ` format
294167be906fSBarry Smith   (block compressed row).
2942273d9f13SBarry Smith 
2943c3339decSBarry Smith   Collective
2944273d9f13SBarry Smith 
2945273d9f13SBarry Smith   Input Parameters:
29461c4f3114SJed Brown + B     - the matrix
294711a5261eSBarry Smith . bs    - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
294867be906fSBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
2949273d9f13SBarry Smith . d_nz  - number of block nonzeros per block row in diagonal portion of local
2950273d9f13SBarry Smith            submatrix  (same for all local rows)
2951273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows
2952273d9f13SBarry Smith            of the in diagonal portion of the local (possibly different for each block
295367be906fSBarry Smith            row) or `NULL`.  If you plan to factor the matrix you must leave room for the diagonal entry and
295495742e49SBarry Smith            set it even if it is zero.
2955273d9f13SBarry Smith . o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2956273d9f13SBarry Smith            submatrix (same for all local rows).
2957273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the
2958273d9f13SBarry Smith            off-diagonal portion of the local submatrix (possibly different for
295967be906fSBarry Smith            each block row) or `NULL`.
2960273d9f13SBarry Smith 
296149a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
2962273d9f13SBarry Smith 
2963273d9f13SBarry Smith   Options Database Keys:
29648c07d4e3SBarry Smith + -mat_block_size            - size of the blocks to use
296567b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor
2966273d9f13SBarry Smith 
296767be906fSBarry Smith   Level: intermediate
296867be906fSBarry Smith 
2969273d9f13SBarry Smith   Notes:
297067be906fSBarry Smith   For good matrix assembly performance
297167be906fSBarry Smith   the user should preallocate the matrix storage by setting the parameters
297267be906fSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).  By setting these parameters accurately,
297367be906fSBarry Smith   performance can be increased by more than a factor of 50.
297467be906fSBarry Smith 
297511a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one processor
2976273d9f13SBarry Smith   than it must be used on all processors that share the object for that argument.
2977273d9f13SBarry Smith 
2978273d9f13SBarry Smith   Storage Information:
2979273d9f13SBarry Smith   For a square global matrix we define each processor's diagonal portion
2980273d9f13SBarry Smith   to be its local rows and the corresponding columns (a square submatrix);
2981273d9f13SBarry Smith   each processor's off-diagonal portion encompasses the remainder of the
2982273d9f13SBarry Smith   local matrix (a rectangular submatrix).
2983273d9f13SBarry Smith 
2984273d9f13SBarry Smith   The user can specify preallocated storage for the diagonal part of
298567be906fSBarry Smith   the local submatrix with either `d_nz` or `d_nnz` (not both).  Set
298667be906fSBarry Smith   `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
2987273d9f13SBarry Smith   memory allocation.  Likewise, specify preallocated storage for the
298867be906fSBarry Smith   off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
2989273d9f13SBarry Smith 
2990273d9f13SBarry Smith   Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2991273d9f13SBarry Smith   the figure below we depict these three local rows and all columns (0-11).
2992273d9f13SBarry Smith 
2993273d9f13SBarry Smith .vb
2994273d9f13SBarry Smith            0 1 2 3 4 5 6 7 8 9 10 11
2995a4b1a0f6SJed Brown           --------------------------
2996273d9f13SBarry Smith    row 3  |o o o d d d o o o o  o  o
2997273d9f13SBarry Smith    row 4  |o o o d d d o o o o  o  o
2998273d9f13SBarry Smith    row 5  |o o o d d d o o o o  o  o
2999a4b1a0f6SJed Brown           --------------------------
3000273d9f13SBarry Smith .ve
3001273d9f13SBarry Smith 
3002273d9f13SBarry Smith   Thus, any entries in the d locations are stored in the d (diagonal)
3003273d9f13SBarry Smith   submatrix, and any entries in the o locations are stored in the
3004273d9f13SBarry Smith   o (off-diagonal) submatrix.  Note that the d and the o submatrices are
300511a5261eSBarry Smith   stored simply in the `MATSEQBAIJ` format for compressed row storage.
3006273d9f13SBarry Smith 
300767be906fSBarry Smith   Now `d_nz` should indicate the number of block nonzeros per row in the d matrix,
300867be906fSBarry Smith   and `o_nz` should indicate the number of block nonzeros per row in the o matrix.
3009273d9f13SBarry Smith   In general, for PDE problems in which most nonzeros are near the diagonal,
301020f4b53cSBarry Smith   one expects `d_nz` >> `o_nz`.
3011273d9f13SBarry Smith 
301211a5261eSBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
3013aa95bbe8SBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
301467be906fSBarry Smith   You can also run with the option `-info` and look for messages with the string
3015aa95bbe8SBarry Smith   malloc in them to see if additional memory allocation was needed.
3016aa95bbe8SBarry Smith 
301767be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocationCSR()`, `PetscSplitOwnership()`
3018273d9f13SBarry Smith @*/
MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])3019d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
3020d71ae5a4SJacob Faibussowitsch {
3021273d9f13SBarry Smith   PetscFunctionBegin;
30226ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
30236ba663aaSJed Brown   PetscValidType(B, 1);
30246ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B, bs, 2);
3025cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz));
30263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3027273d9f13SBarry Smith }
3028273d9f13SBarry Smith 
30292920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
30305d83a8b1SBarry Smith /*@
303111a5261eSBarry Smith   MatCreateBAIJ - Creates a sparse parallel matrix in `MATBAIJ` format
303267be906fSBarry Smith   (block compressed row).
303379bdfe76SSatish Balay 
3034d083f849SBarry Smith   Collective
3035db81eaa0SLois Curfman McInnes 
303679bdfe76SSatish Balay   Input Parameters:
3037db81eaa0SLois Curfman McInnes + comm  - MPI communicator
303811a5261eSBarry Smith . bs    - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
303911a5261eSBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
304011a5261eSBarry Smith . m     - number of local rows (or `PETSC_DECIDE` to have calculated if M is given)
304192e8d321SLois Curfman McInnes           This value should be the same as the local size used in creating the
304292e8d321SLois Curfman McInnes           y vector for the matrix-vector product y = Ax.
304311a5261eSBarry Smith . n     - number of local columns (or `PETSC_DECIDE` to have calculated if N is given)
304492e8d321SLois Curfman McInnes           This value should be the same as the local size used in creating the
304592e8d321SLois Curfman McInnes           x vector for the matrix-vector product y = Ax.
304611a5261eSBarry Smith . M     - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
304711a5261eSBarry Smith . N     - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
304847a75d0bSBarry Smith . d_nz  - number of nonzero blocks per block row in diagonal portion of local
304979bdfe76SSatish Balay           submatrix  (same for all local rows)
305047a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows
305192e8d321SLois Curfman McInnes           of the in diagonal portion of the local (possibly different for each block
30520298fd71SBarry Smith           row) or NULL.  If you plan to factor the matrix you must leave room for the diagonal entry
305395742e49SBarry Smith           and set it even if it is zero.
305447a75d0bSBarry Smith . o_nz  - number of nonzero blocks per block row in the off-diagonal portion of local
305579bdfe76SSatish Balay           submatrix (same for all local rows).
305647a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the
305792e8d321SLois Curfman McInnes           off-diagonal portion of the local submatrix (possibly different for
30580298fd71SBarry Smith           each block row) or NULL.
305979bdfe76SSatish Balay 
306079bdfe76SSatish Balay   Output Parameter:
306179bdfe76SSatish Balay . A - the matrix
306279bdfe76SSatish Balay 
3063db81eaa0SLois Curfman McInnes   Options Database Keys:
30648c07d4e3SBarry Smith + -mat_block_size            - size of the blocks to use
306567b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor
30663ffaccefSLois Curfman McInnes 
306767be906fSBarry Smith   Level: intermediate
306867be906fSBarry Smith 
306967be906fSBarry Smith   Notes:
307077433607SBarry Smith   It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
307177433607SBarry Smith   MatXXXXSetPreallocation() paradigm instead of this routine directly.
307277433607SBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqBAIJSetPreallocation()`]
307377433607SBarry Smith 
307467be906fSBarry Smith   For good matrix assembly performance
307567be906fSBarry Smith   the user should preallocate the matrix storage by setting the parameters
307667be906fSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).  By setting these parameters accurately,
307767be906fSBarry Smith   performance can be increased by more than a factor of 50.
307867be906fSBarry Smith 
307949a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
308049a6f317SBarry Smith 
308147a75d0bSBarry Smith   A nonzero block is any block that as 1 or more nonzeros in it
308247a75d0bSBarry Smith 
308379bdfe76SSatish Balay   The user MUST specify either the local or global matrix dimensions
308479bdfe76SSatish Balay   (possibly both).
308579bdfe76SSatish Balay 
308611a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one processor
3087be79a94dSBarry Smith   than it must be used on all processors that share the object for that argument.
3088be79a94dSBarry Smith 
3089727bdf9bSBarry Smith   If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by
3090727bdf9bSBarry Smith   `MatGetOwnershipRange()`,  `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`.
3091727bdf9bSBarry Smith 
309279bdfe76SSatish Balay   Storage Information:
309379bdfe76SSatish Balay   For a square global matrix we define each processor's diagonal portion
309479bdfe76SSatish Balay   to be its local rows and the corresponding columns (a square submatrix);
309579bdfe76SSatish Balay   each processor's off-diagonal portion encompasses the remainder of the
309679bdfe76SSatish Balay   local matrix (a rectangular submatrix).
309779bdfe76SSatish Balay 
309879bdfe76SSatish Balay   The user can specify preallocated storage for the diagonal part of
309979bdfe76SSatish Balay   the local submatrix with either d_nz or d_nnz (not both).  Set
310067be906fSBarry Smith   `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
310179bdfe76SSatish Balay   memory allocation.  Likewise, specify preallocated storage for the
310267be906fSBarry Smith   off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
310379bdfe76SSatish Balay 
310479bdfe76SSatish Balay   Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
310579bdfe76SSatish Balay   the figure below we depict these three local rows and all columns (0-11).
310679bdfe76SSatish Balay 
3107db81eaa0SLois Curfman McInnes .vb
3108db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
3109a4b1a0f6SJed Brown           --------------------------
3110db81eaa0SLois Curfman McInnes    row 3  |o o o d d d o o o o  o  o
3111db81eaa0SLois Curfman McInnes    row 4  |o o o d d d o o o o  o  o
3112db81eaa0SLois Curfman McInnes    row 5  |o o o d d d o o o o  o  o
3113a4b1a0f6SJed Brown           --------------------------
3114db81eaa0SLois Curfman McInnes .ve
311579bdfe76SSatish Balay 
311679bdfe76SSatish Balay   Thus, any entries in the d locations are stored in the d (diagonal)
311779bdfe76SSatish Balay   submatrix, and any entries in the o locations are stored in the
311879bdfe76SSatish Balay   o (off-diagonal) submatrix.  Note that the d and the o submatrices are
311911a5261eSBarry Smith   stored simply in the `MATSEQBAIJ` format for compressed row storage.
312079bdfe76SSatish Balay 
312167be906fSBarry Smith   Now `d_nz` should indicate the number of block nonzeros per row in the d matrix,
312267be906fSBarry Smith   and `o_nz` should indicate the number of block nonzeros per row in the o matrix.
312379bdfe76SSatish Balay   In general, for PDE problems in which most nonzeros are near the diagonal,
312420f4b53cSBarry Smith   one expects `d_nz` >> `o_nz`.
312579bdfe76SSatish Balay 
3126727bdf9bSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`,
3127727bdf9bSBarry Smith           `MatGetOwnershipRange()`,  `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, `MatGetOwnershipRangesColumn()`, `PetscLayout`
312879bdfe76SSatish Balay @*/
MatCreateBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat * A)3129d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
3130d71ae5a4SJacob Faibussowitsch {
3131b24ad042SBarry Smith   PetscMPIInt size;
313279bdfe76SSatish Balay 
3133d64ed03dSBarry Smith   PetscFunctionBegin;
31349566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
31359566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
31369566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
3137273d9f13SBarry Smith   if (size > 1) {
31389566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPIBAIJ));
31399566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz));
3140273d9f13SBarry Smith   } else {
31419566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQBAIJ));
31429566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(*A, bs, d_nz, d_nnz));
31433914022bSBarry Smith   }
31443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
314579bdfe76SSatish Balay }
3146026e39d0SSatish Balay 
MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat * newmat)3147d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
3148d71ae5a4SJacob Faibussowitsch {
31490ac07820SSatish Balay   Mat          mat;
31500ac07820SSatish Balay   Mat_MPIBAIJ *a, *oldmat = (Mat_MPIBAIJ *)matin->data;
3151b24ad042SBarry Smith   PetscInt     len = 0;
31520ac07820SSatish Balay 
3153d64ed03dSBarry Smith   PetscFunctionBegin;
3154f4259b30SLisandro Dalcin   *newmat = NULL;
31559566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
31569566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
31579566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
31587fff6886SHong Zhang 
3159420957c1SBarry Smith   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
3160420957c1SBarry Smith   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
3161420957c1SBarry Smith   if (matin->hash_active) {
3162420957c1SBarry Smith     PetscCall(MatSetUp(mat));
3163420957c1SBarry Smith   } else {
3164d5f3da31SBarry Smith     mat->factortype   = matin->factortype;
3165273d9f13SBarry Smith     mat->preallocated = PETSC_TRUE;
31660ac07820SSatish Balay     mat->assembled    = PETSC_TRUE;
31677fff6886SHong Zhang     mat->insertmode   = NOT_SET_VALUES;
31687fff6886SHong Zhang 
3169273d9f13SBarry Smith     a             = (Mat_MPIBAIJ *)mat->data;
3170d0f46423SBarry Smith     mat->rmap->bs = matin->rmap->bs;
31710ac07820SSatish Balay     a->bs2        = oldmat->bs2;
31720ac07820SSatish Balay     a->mbs        = oldmat->mbs;
31730ac07820SSatish Balay     a->nbs        = oldmat->nbs;
31740ac07820SSatish Balay     a->Mbs        = oldmat->Mbs;
31750ac07820SSatish Balay     a->Nbs        = oldmat->Nbs;
31760ac07820SSatish Balay 
31770ac07820SSatish Balay     a->size         = oldmat->size;
31780ac07820SSatish Balay     a->rank         = oldmat->rank;
3179aef5e8e0SSatish Balay     a->donotstash   = oldmat->donotstash;
3180aef5e8e0SSatish Balay     a->roworiented  = oldmat->roworiented;
3181f4259b30SLisandro Dalcin     a->rowindices   = NULL;
3182f4259b30SLisandro Dalcin     a->rowvalues    = NULL;
31830ac07820SSatish Balay     a->getrowactive = PETSC_FALSE;
3184f4259b30SLisandro Dalcin     a->barray       = NULL;
3185899cda47SBarry Smith     a->rstartbs     = oldmat->rstartbs;
3186899cda47SBarry Smith     a->rendbs       = oldmat->rendbs;
3187899cda47SBarry Smith     a->cstartbs     = oldmat->cstartbs;
3188899cda47SBarry Smith     a->cendbs       = oldmat->cendbs;
31890ac07820SSatish Balay 
3190133cdb44SSatish Balay     /* hash table stuff */
3191f4259b30SLisandro Dalcin     a->ht           = NULL;
3192f4259b30SLisandro Dalcin     a->hd           = NULL;
3193133cdb44SSatish Balay     a->ht_size      = 0;
3194133cdb44SSatish Balay     a->ht_flag      = oldmat->ht_flag;
319525fdafccSSatish Balay     a->ht_fact      = oldmat->ht_fact;
3196133cdb44SSatish Balay     a->ht_total_ct  = 0;
3197133cdb44SSatish Balay     a->ht_insert_ct = 0;
3198133cdb44SSatish Balay 
31999566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 1));
32000ac07820SSatish Balay     if (oldmat->colmap) {
3201aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
3202eec179cfSJacob Faibussowitsch       PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
320348e59246SSatish Balay #else
32049566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(a->Nbs, &a->colmap));
32059566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs));
320648e59246SSatish Balay #endif
3207f4259b30SLisandro Dalcin     } else a->colmap = NULL;
32084beb1cfeSHong Zhang 
3209f4f49eeaSPierre Jolivet     if (oldmat->garray && (len = ((Mat_SeqBAIJ *)oldmat->B->data)->nbs)) {
32109566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(len, &a->garray));
32119566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
3212f4259b30SLisandro Dalcin     } else a->garray = NULL;
32130ac07820SSatish Balay 
32149566063dSJacob Faibussowitsch     PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash));
32159566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
32169566063dSJacob Faibussowitsch     PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx));
32177fff6886SHong Zhang 
32189566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
32199566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
3220420957c1SBarry Smith   }
32219566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
32220ac07820SSatish Balay   *newmat = mat;
32233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
32240ac07820SSatish Balay }
322557b952d6SSatish Balay 
3226618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
MatLoad_MPIBAIJ_Binary(Mat mat,PetscViewer viewer)3227d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat, PetscViewer viewer)
3228d71ae5a4SJacob Faibussowitsch {
3229b51a4376SLisandro Dalcin   PetscInt     header[4], M, N, nz, bs, m, n, mbs, nbs, rows, cols, sum, i, j, k;
3230b51a4376SLisandro Dalcin   PetscInt    *rowidxs, *colidxs, rs, cs, ce;
3231b51a4376SLisandro Dalcin   PetscScalar *matvals;
3232b51a4376SLisandro Dalcin 
3233b51a4376SLisandro Dalcin   PetscFunctionBegin;
32349566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
3235b51a4376SLisandro Dalcin 
3236b51a4376SLisandro Dalcin   /* read in matrix header */
32379566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT));
32385f80ce2aSJacob Faibussowitsch   PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file");
32399371c9d4SSatish Balay   M  = header[1];
32409371c9d4SSatish Balay   N  = header[2];
32419371c9d4SSatish Balay   nz = header[3];
32425f80ce2aSJacob Faibussowitsch   PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M);
32435f80ce2aSJacob Faibussowitsch   PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N);
32445f80ce2aSJacob Faibussowitsch   PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIBAIJ");
3245b51a4376SLisandro Dalcin 
3246b51a4376SLisandro Dalcin   /* set block sizes from the viewer's .info file */
32479566063dSJacob Faibussowitsch   PetscCall(MatLoad_Binary_BlockSizes(mat, viewer));
3248618cc2edSLisandro Dalcin   /* set local sizes if not set already */
3249618cc2edSLisandro Dalcin   if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n;
3250618cc2edSLisandro Dalcin   if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n;
3251b51a4376SLisandro Dalcin   /* set global sizes if not set already */
3252b51a4376SLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
3253b51a4376SLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
32549566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
32559566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
3256b51a4376SLisandro Dalcin 
3257b51a4376SLisandro Dalcin   /* check if the matrix sizes are correct */
32589566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &rows, &cols));
32595f80ce2aSJacob Faibussowitsch   PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols);
32609566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(mat, &bs));
32619566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
32629566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rs, NULL));
32639566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cs, &ce));
32649371c9d4SSatish Balay   mbs = m / bs;
32659371c9d4SSatish Balay   nbs = n / bs;
3266b51a4376SLisandro Dalcin 
3267b51a4376SLisandro Dalcin   /* read in row lengths and build row indices */
32689566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &rowidxs));
32699566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT));
32709371c9d4SSatish Balay   rowidxs[0] = 0;
32719371c9d4SSatish Balay   for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i];
3272462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer)));
32735f80ce2aSJacob Faibussowitsch   PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum);
3274b51a4376SLisandro Dalcin 
3275b51a4376SLisandro Dalcin   /* read in column indices and matrix values */
32769566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals));
32779566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
32789566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
3279b51a4376SLisandro Dalcin 
3280b51a4376SLisandro Dalcin   {                /* preallocate matrix storage */
3281b51a4376SLisandro Dalcin     PetscBT    bt; /* helper bit set to count diagonal nonzeros */
3282b51a4376SLisandro Dalcin     PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */
3283618cc2edSLisandro Dalcin     PetscBool  sbaij, done;
3284b51a4376SLisandro Dalcin     PetscInt  *d_nnz, *o_nnz;
3285b51a4376SLisandro Dalcin 
32869566063dSJacob Faibussowitsch     PetscCall(PetscBTCreate(nbs, &bt));
32879566063dSJacob Faibussowitsch     PetscCall(PetscHSetICreate(&ht));
32889566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(mbs, &d_nnz, mbs, &o_nnz));
32899566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPISBAIJ, &sbaij));
3290b51a4376SLisandro Dalcin     for (i = 0; i < mbs; i++) {
32919566063dSJacob Faibussowitsch       PetscCall(PetscBTMemzero(nbs, bt));
32929566063dSJacob Faibussowitsch       PetscCall(PetscHSetIClear(ht));
3293618cc2edSLisandro Dalcin       for (k = 0; k < bs; k++) {
3294618cc2edSLisandro Dalcin         PetscInt row = bs * i + k;
3295618cc2edSLisandro Dalcin         for (j = rowidxs[row]; j < rowidxs[row + 1]; j++) {
3296618cc2edSLisandro Dalcin           PetscInt col = colidxs[j];
3297618cc2edSLisandro Dalcin           if (!sbaij || col >= row) {
3298618cc2edSLisandro Dalcin             if (col >= cs && col < ce) {
3299618cc2edSLisandro Dalcin               if (!PetscBTLookupSet(bt, (col - cs) / bs)) d_nnz[i]++;
3300b51a4376SLisandro Dalcin             } else {
33019566063dSJacob Faibussowitsch               PetscCall(PetscHSetIQueryAdd(ht, col / bs, &done));
3302b51a4376SLisandro Dalcin               if (done) o_nnz[i]++;
3303b51a4376SLisandro Dalcin             }
3304b51a4376SLisandro Dalcin           }
3305618cc2edSLisandro Dalcin         }
3306618cc2edSLisandro Dalcin       }
3307618cc2edSLisandro Dalcin     }
33089566063dSJacob Faibussowitsch     PetscCall(PetscBTDestroy(&bt));
33099566063dSJacob Faibussowitsch     PetscCall(PetscHSetIDestroy(&ht));
33109566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz));
33119566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz));
33129566063dSJacob Faibussowitsch     PetscCall(PetscFree2(d_nnz, o_nnz));
3313b51a4376SLisandro Dalcin   }
3314b51a4376SLisandro Dalcin 
3315b51a4376SLisandro Dalcin   /* store matrix values */
3316b51a4376SLisandro Dalcin   for (i = 0; i < m; i++) {
3317b51a4376SLisandro Dalcin     PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i + 1];
33189927e4dfSBarry Smith     PetscUseTypeMethod(mat, setvalues, 1, &row, e - s, colidxs + s, matvals + s, INSERT_VALUES);
3319b51a4376SLisandro Dalcin   }
3320b51a4376SLisandro Dalcin 
33219566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowidxs));
33229566063dSJacob Faibussowitsch   PetscCall(PetscFree2(colidxs, matvals));
33239566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
33249566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
33253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3326b51a4376SLisandro Dalcin }
3327b51a4376SLisandro Dalcin 
MatLoad_MPIBAIJ(Mat mat,PetscViewer viewer)3328d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ(Mat mat, PetscViewer viewer)
3329d71ae5a4SJacob Faibussowitsch {
33307f489da9SVaclav Hapla   PetscBool isbinary;
33314683f7a4SShri Abhyankar 
33324683f7a4SShri Abhyankar   PetscFunctionBegin;
33339566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
33345f80ce2aSJacob Faibussowitsch   PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name);
33359566063dSJacob Faibussowitsch   PetscCall(MatLoad_MPIBAIJ_Binary(mat, viewer));
33363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33374683f7a4SShri Abhyankar }
33384683f7a4SShri Abhyankar 
3339133cdb44SSatish Balay /*@
334011a5261eSBarry Smith   MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the matrices hash table
3341133cdb44SSatish Balay 
3342133cdb44SSatish Balay   Input Parameters:
3343a2b725a8SWilliam Gropp + mat  - the matrix
3344a2b725a8SWilliam Gropp - fact - factor
3345133cdb44SSatish Balay 
334611a5261eSBarry Smith   Options Database Key:
334711a5261eSBarry Smith . -mat_use_hash_table <fact> - provide the factor
3348fee21e36SBarry Smith 
33498c890885SBarry Smith   Level: advanced
33508c890885SBarry Smith 
335167be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatSetOption()`
3352133cdb44SSatish Balay @*/
MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact)3353d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat, PetscReal fact)
3354d71ae5a4SJacob Faibussowitsch {
33555bf65638SKris Buschelman   PetscFunctionBegin;
3356cac4c232SBarry Smith   PetscTryMethod(mat, "MatSetHashTableFactor_C", (Mat, PetscReal), (mat, fact));
33573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33585bf65638SKris Buschelman }
33595bf65638SKris Buschelman 
MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact)3360d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat, PetscReal fact)
3361d71ae5a4SJacob Faibussowitsch {
336225fdafccSSatish Balay   Mat_MPIBAIJ *baij;
3363133cdb44SSatish Balay 
3364133cdb44SSatish Balay   PetscFunctionBegin;
3365133cdb44SSatish Balay   baij          = (Mat_MPIBAIJ *)mat->data;
3366133cdb44SSatish Balay   baij->ht_fact = fact;
33673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3368133cdb44SSatish Balay }
3369f2a5309cSSatish Balay 
MatMPIBAIJGetSeqBAIJ(Mat A,Mat * Ad,Mat * Ao,const PetscInt * colmap[])3370d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[])
3371d71ae5a4SJacob Faibussowitsch {
3372f2a5309cSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
3373ab4d48faSStefano Zampini   PetscBool    flg;
33745fd66863SKarl Rupp 
3375f2a5309cSSatish Balay   PetscFunctionBegin;
33769566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIBAIJ, &flg));
33775f80ce2aSJacob Faibussowitsch   PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIBAIJ matrix as input");
337821e72a00SBarry Smith   if (Ad) *Ad = a->A;
337921e72a00SBarry Smith   if (Ao) *Ao = a->B;
338021e72a00SBarry Smith   if (colmap) *colmap = a->garray;
33813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3382f2a5309cSSatish Balay }
338385535b8eSBarry Smith 
338485535b8eSBarry Smith /*
338585535b8eSBarry Smith     Special version for direct calls from Fortran (to eliminate two function call overheads
338685535b8eSBarry Smith */
338785535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
338885535b8eSBarry Smith   #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED
338985535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
339085535b8eSBarry Smith   #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked
339185535b8eSBarry Smith #endif
339285535b8eSBarry Smith 
33932920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-synopsis-matching-symbol-name
339485535b8eSBarry Smith /*@C
339511a5261eSBarry Smith   MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to `MatSetValuesBlocked()`
339685535b8eSBarry Smith 
3397c3339decSBarry Smith   Collective
339885535b8eSBarry Smith 
339985535b8eSBarry Smith   Input Parameters:
3400fe59aa6dSJacob Faibussowitsch + matin  - the matrix
340185535b8eSBarry Smith . min    - number of input rows
340285535b8eSBarry Smith . im     - input rows
340385535b8eSBarry Smith . nin    - number of input columns
340485535b8eSBarry Smith . in     - input columns
340585535b8eSBarry Smith . v      - numerical values input
340611a5261eSBarry Smith - addvin - `INSERT_VALUES` or `ADD_VALUES`
340785535b8eSBarry Smith 
340820f4b53cSBarry Smith   Level: advanced
340920f4b53cSBarry Smith 
3410fe59aa6dSJacob Faibussowitsch   Developer Notes:
341111a5261eSBarry Smith   This has a complete copy of `MatSetValuesBlocked_MPIBAIJ()` which is terrible code un-reuse.
341285535b8eSBarry Smith 
341367be906fSBarry Smith .seealso: `Mat`, `MatSetValuesBlocked()`
341485535b8eSBarry Smith @*/
matmpibaijsetvaluesblocked_(Mat * matin,PetscInt * min,const PetscInt im[],PetscInt * nin,const PetscInt in[],const MatScalar v[],InsertMode * addvin)341566976f2fSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin, PetscInt *min, const PetscInt im[], PetscInt *nin, const PetscInt in[], const MatScalar v[], InsertMode *addvin)
3416d71ae5a4SJacob Faibussowitsch {
341785535b8eSBarry Smith   /* convert input arguments to C version */
341885535b8eSBarry Smith   Mat        mat = *matin;
341985535b8eSBarry Smith   PetscInt   m = *min, n = *nin;
342085535b8eSBarry Smith   InsertMode addv = *addvin;
342185535b8eSBarry Smith 
342285535b8eSBarry Smith   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ *)mat->data;
342385535b8eSBarry Smith   const MatScalar *value;
342485535b8eSBarry Smith   MatScalar       *barray      = baij->barray;
3425ace3abfcSBarry Smith   PetscBool        roworiented = baij->roworiented;
342685535b8eSBarry Smith   PetscInt         i, j, ii, jj, row, col, rstart = baij->rstartbs;
342785535b8eSBarry Smith   PetscInt         rend = baij->rendbs, cstart = baij->cstartbs, stepval;
3428d0f46423SBarry Smith   PetscInt         cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2;
342985535b8eSBarry Smith 
343085535b8eSBarry Smith   PetscFunctionBegin;
343185535b8eSBarry Smith   /* tasks normally handled by MatSetValuesBlocked() */
343226fbe8dcSKarl Rupp   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
34335f80ce2aSJacob Faibussowitsch   else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values");
34345f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
343585535b8eSBarry Smith   if (mat->assembled) {
343685535b8eSBarry Smith     mat->was_assembled = PETSC_TRUE;
343785535b8eSBarry Smith     mat->assembled     = PETSC_FALSE;
343885535b8eSBarry Smith   }
34399566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0));
344085535b8eSBarry Smith 
344185535b8eSBarry Smith   if (!barray) {
34429566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2, &barray));
344385535b8eSBarry Smith     baij->barray = barray;
344485535b8eSBarry Smith   }
344585535b8eSBarry Smith 
344626fbe8dcSKarl Rupp   if (roworiented) stepval = (n - 1) * bs;
344726fbe8dcSKarl Rupp   else stepval = (m - 1) * bs;
344826fbe8dcSKarl Rupp 
344985535b8eSBarry Smith   for (i = 0; i < m; i++) {
345085535b8eSBarry Smith     if (im[i] < 0) continue;
34516bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large, row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
345285535b8eSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
345385535b8eSBarry Smith       row = im[i] - rstart;
345485535b8eSBarry Smith       for (j = 0; j < n; j++) {
345585535b8eSBarry Smith         /* If NumCol = 1 then a copy is not required */
345685535b8eSBarry Smith         if ((roworiented) && (n == 1)) {
345785535b8eSBarry Smith           barray = (MatScalar *)v + i * bs2;
345885535b8eSBarry Smith         } else if ((!roworiented) && (m == 1)) {
345985535b8eSBarry Smith           barray = (MatScalar *)v + j * bs2;
346085535b8eSBarry Smith         } else { /* Here a copy is required */
346185535b8eSBarry Smith           if (roworiented) {
346285535b8eSBarry Smith             value = v + i * (stepval + bs) * bs + j * bs;
346385535b8eSBarry Smith           } else {
346485535b8eSBarry Smith             value = v + j * (stepval + bs) * bs + i * bs;
346585535b8eSBarry Smith           }
346685535b8eSBarry Smith           for (ii = 0; ii < bs; ii++, value += stepval) {
3467ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *barray++ = *value++;
346885535b8eSBarry Smith           }
346985535b8eSBarry Smith           barray -= bs2;
347085535b8eSBarry Smith         }
347185535b8eSBarry Smith 
347285535b8eSBarry Smith         if (in[j] >= cstart && in[j] < cend) {
347385535b8eSBarry Smith           col = in[j] - cstart;
34749566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j]));
3475f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
3476f7d195e4SLawrence Mitchell           continue;
3477f7d195e4SLawrence Mitchell         } else {
3478f7d195e4SLawrence Mitchell           PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large, col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1);
347985535b8eSBarry Smith           if (mat->was_assembled) {
348048a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
348185535b8eSBarry Smith 
348285535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
348385535b8eSBarry Smith   #if defined(PETSC_USE_CTABLE)
34849371c9d4SSatish Balay             {
34859371c9d4SSatish Balay               PetscInt data;
3486eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data));
348708401ef6SPierre Jolivet               PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
348885535b8eSBarry Smith             }
348985535b8eSBarry Smith   #else
349008401ef6SPierre Jolivet             PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
349185535b8eSBarry Smith   #endif
349285535b8eSBarry Smith #endif
349385535b8eSBarry Smith #if defined(PETSC_USE_CTABLE)
3494eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col));
349585535b8eSBarry Smith             col = (col - 1) / bs;
349685535b8eSBarry Smith #else
349785535b8eSBarry Smith             col = (baij->colmap[in[j]] - 1) / bs;
349885535b8eSBarry Smith #endif
3499f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqBAIJ *)baij->A->data)->nonew) {
35009566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
350185535b8eSBarry Smith               col = in[j];
350285535b8eSBarry Smith             }
350326fbe8dcSKarl Rupp           } else col = in[j];
35049566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j]));
350585535b8eSBarry Smith         }
350685535b8eSBarry Smith       }
350785535b8eSBarry Smith     } else {
350885535b8eSBarry Smith       if (!baij->donotstash) {
350985535b8eSBarry Smith         if (roworiented) {
35109566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
351185535b8eSBarry Smith         } else {
35129566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
351385535b8eSBarry Smith         }
351485535b8eSBarry Smith       }
351585535b8eSBarry Smith     }
351685535b8eSBarry Smith   }
351785535b8eSBarry Smith 
351885535b8eSBarry Smith   /* task normally handled by MatSetValuesBlocked() */
35199566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0));
35203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
352185535b8eSBarry Smith }
3522dfb205c3SBarry Smith 
3523dfb205c3SBarry Smith /*@
3524d8a51d2aSBarry Smith   MatCreateMPIBAIJWithArrays - creates a `MATMPIBAIJ` matrix using arrays that contain in standard block CSR format for the local rows.
3525dfb205c3SBarry Smith 
3526d083f849SBarry Smith   Collective
3527dfb205c3SBarry Smith 
3528dfb205c3SBarry Smith   Input Parameters:
3529dfb205c3SBarry Smith + comm - MPI communicator
3530dfb205c3SBarry Smith . bs   - the block size, only a block size of 1 is supported
353111a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
3532dfb205c3SBarry Smith . n    - This value should be the same as the local size used in creating the
3533d8a51d2aSBarry Smith          x vector for the matrix-vector product $ y = Ax $. (or `PETSC_DECIDE` to have
3534d8a51d2aSBarry Smith          calculated if `N` is given) For square matrices `n` is almost always `m`.
3535d8a51d2aSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
3536d8a51d2aSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
3537483a2f95SBarry Smith . i    - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix
3538dfb205c3SBarry Smith . j    - column indices
3539dfb205c3SBarry Smith - a    - matrix values
3540dfb205c3SBarry Smith 
3541dfb205c3SBarry Smith   Output Parameter:
3542dfb205c3SBarry Smith . mat - the matrix
3543dfb205c3SBarry Smith 
3544dfb205c3SBarry Smith   Level: intermediate
3545dfb205c3SBarry Smith 
3546dfb205c3SBarry Smith   Notes:
354767be906fSBarry Smith   The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
3548dfb205c3SBarry Smith   thus you CANNOT change the matrix entries by changing the values of a[] after you have
354911a5261eSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
3550dfb205c3SBarry Smith 
35513adadaf3SJed Brown   The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is
35523adadaf3SJed Brown   the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first
35533adadaf3SJed Brown   block, followed by the second column of the first block etc etc.  That is, the blocks are contiguous in memory
35543adadaf3SJed Brown   with column-major ordering within blocks.
35553adadaf3SJed Brown 
3556d8a51d2aSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
3557dfb205c3SBarry Smith 
355867be906fSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
35597d2c085eSPierre Jolivet           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`
3560dfb205c3SBarry Smith @*/
MatCreateMPIBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat * mat)3561d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
3562d71ae5a4SJacob Faibussowitsch {
3563dfb205c3SBarry Smith   PetscFunctionBegin;
35645f80ce2aSJacob Faibussowitsch   PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
35655f80ce2aSJacob Faibussowitsch   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
35669566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
35679566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
35689566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIBAIJ));
35699566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(*mat, bs));
35709566063dSJacob Faibussowitsch   PetscCall(MatSetUp(*mat));
35719566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_FALSE));
35729566063dSJacob Faibussowitsch   PetscCall(MatMPIBAIJSetPreallocationCSR(*mat, bs, i, j, a));
35739566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_TRUE));
35743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3575dfb205c3SBarry Smith }
3576e561ad89SHong Zhang 
MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat * outmat)3577d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
3578d71ae5a4SJacob Faibussowitsch {
3579bd153df0SHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii, bs, cbs;
3580bd153df0SHong Zhang   PetscInt    *indx;
3581bd153df0SHong Zhang   PetscScalar *values;
3582e561ad89SHong Zhang 
3583e561ad89SHong Zhang   PetscFunctionBegin;
35849566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
3585bd153df0SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
3586bd153df0SHong Zhang     Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)inmat->data;
35872c6ba4edSHong Zhang     PetscInt    *dnz, *onz, mbs, Nbs, nbs;
3588bd153df0SHong Zhang     PetscInt    *bindx, rmax = a->rmax, j;
358977f764caSHong Zhang     PetscMPIInt  rank, size;
3590e561ad89SHong Zhang 
35919566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
35929371c9d4SSatish Balay     mbs = m / bs;
35939371c9d4SSatish Balay     Nbs = N / cbs;
359448a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N));
3595da91a574SPierre Jolivet     nbs = n / cbs;
3596e561ad89SHong Zhang 
35979566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(rmax, &bindx));
3598d0609cedSBarry Smith     MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */
359977f764caSHong Zhang 
36009566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
3601*badd099fSHan Liu     PetscCallMPI(MPI_Comm_size(comm, &size));
360277f764caSHong Zhang     if (rank == size - 1) {
360377f764caSHong Zhang       /* Check sum(nbs) = Nbs */
36045f80ce2aSJacob Faibussowitsch       PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs);
360577f764caSHong Zhang     }
360677f764caSHong Zhang 
3607d0609cedSBarry Smith     rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */
3608bd153df0SHong Zhang     for (i = 0; i < mbs; i++) {
36099566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */
3610647a6520SHong Zhang       nnz = nnz / bs;
3611647a6520SHong Zhang       for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs;
36129566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz));
36139566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL));
3614e561ad89SHong Zhang     }
36159566063dSJacob Faibussowitsch     PetscCall(PetscFree(bindx));
3616e561ad89SHong Zhang 
36179566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
36189566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
36199566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
36209566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, MATBAIJ));
36219566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(*outmat, bs, 0, dnz));
36229566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz));
3623d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
36249566063dSJacob Faibussowitsch     PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
3625e561ad89SHong Zhang   }
3626e561ad89SHong Zhang 
3627bd153df0SHong Zhang   /* numeric phase */
36289566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
36299566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
3630e561ad89SHong Zhang 
3631e561ad89SHong Zhang   for (i = 0; i < m; i++) {
36329566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqBAIJ(inmat, i, &nnz, &indx, &values));
3633e561ad89SHong Zhang     Ii = i + rstart;
36349566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
36359566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqBAIJ(inmat, i, &nnz, &indx, &values));
3636e561ad89SHong Zhang   }
36379566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
36389566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
36393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3640e561ad89SHong Zhang }
3641