1be1d678aSKris Buschelman #define PETSCMAT_DLL 2be1d678aSKris Buschelman 3ed3cc1f0SBarry Smith /* 4ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 5ed3cc1f0SBarry Smith */ 6ed3cc1f0SBarry Smith 789ac3759SBarry Smith #include "src/mat/impls/dense/mpi/mpidense.h" /*I "petscmat.h" I*/ 88965ea79SLois Curfman McInnes 9ba8c8a56SBarry Smith #undef __FUNCT__ 100ad19415SHong Zhang #define __FUNCT__ "MatLUFactorSymbolic_MPIDense" 110ad19415SHong Zhang PetscErrorCode MatLUFactorSymbolic_MPIDense(Mat A,IS row,IS col,MatFactorInfo *info,Mat *fact) 120ad19415SHong Zhang { 130ad19415SHong Zhang PetscErrorCode ierr; 140ad19415SHong Zhang 150ad19415SHong Zhang PetscFunctionBegin; 166017fc9fSHong Zhang ierr = MatDuplicate(A,MAT_DO_NOT_COPY_VALUES,fact);CHKERRQ(ierr); 170ad19415SHong Zhang PetscFunctionReturn(0); 180ad19415SHong Zhang } 190ad19415SHong Zhang 200ad19415SHong Zhang #undef __FUNCT__ 210ad19415SHong Zhang #define __FUNCT__ "MatCholeskyFactorSymbolic_MPIDense" 226017fc9fSHong Zhang PetscErrorCode MatCholeskyFactorSymbolic_MPIDense(Mat A,IS perm,MatFactorInfo *info,Mat *fact) 230ad19415SHong Zhang { 240ad19415SHong Zhang PetscErrorCode ierr; 250ad19415SHong Zhang 260ad19415SHong Zhang PetscFunctionBegin; 276017fc9fSHong Zhang ierr = MatDuplicate(A,MAT_DO_NOT_COPY_VALUES,fact);CHKERRQ(ierr); 280ad19415SHong Zhang PetscFunctionReturn(0); 290ad19415SHong Zhang } 300ad19415SHong Zhang 310ad19415SHong Zhang #undef __FUNCT__ 32ab92ecdeSBarry Smith #define __FUNCT__ "MatDenseGetLocalMatrix" 33ab92ecdeSBarry Smith /*@ 34ab92ecdeSBarry Smith 35ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 36ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 37ab92ecdeSBarry Smith 38ab92ecdeSBarry Smith Input Parameter: 39ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 40ab92ecdeSBarry Smith 41ab92ecdeSBarry Smith Output Parameter: 42ab92ecdeSBarry Smith . B - the inner matrix 43ab92ecdeSBarry Smith 448e6c10adSSatish Balay Level: intermediate 458e6c10adSSatish Balay 46ab92ecdeSBarry Smith @*/ 47ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 48ab92ecdeSBarry Smith { 49ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 50ab92ecdeSBarry Smith PetscErrorCode ierr; 51ab92ecdeSBarry Smith PetscTruth flg; 52ab92ecdeSBarry Smith PetscMPIInt size; 53ab92ecdeSBarry Smith 54ab92ecdeSBarry Smith PetscFunctionBegin; 55ab92ecdeSBarry Smith ierr = PetscTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr); 56ab92ecdeSBarry Smith if (!flg) { /* this check sucks! */ 57ab92ecdeSBarry Smith ierr = PetscTypeCompare((PetscObject)A,MATDENSE,&flg);CHKERRQ(ierr); 58ab92ecdeSBarry Smith if (flg) { 59ab92ecdeSBarry Smith ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 60ab92ecdeSBarry Smith if (size == 1) flg = PETSC_FALSE; 61ab92ecdeSBarry Smith } 62ab92ecdeSBarry Smith } 63ab92ecdeSBarry Smith if (flg) { 64ab92ecdeSBarry Smith *B = mat->A; 65ab92ecdeSBarry Smith } else { 66ab92ecdeSBarry Smith *B = A; 67ab92ecdeSBarry Smith } 68ab92ecdeSBarry Smith PetscFunctionReturn(0); 69ab92ecdeSBarry Smith } 70ab92ecdeSBarry Smith 71ab92ecdeSBarry Smith #undef __FUNCT__ 72ba8c8a56SBarry Smith #define __FUNCT__ "MatGetRow_MPIDense" 73ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 74ba8c8a56SBarry Smith { 75ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 76ba8c8a56SBarry Smith PetscErrorCode ierr; 77899cda47SBarry Smith PetscInt lrow,rstart = A->rmap.rstart,rend = A->rmap.rend; 78ba8c8a56SBarry Smith 79ba8c8a56SBarry Smith PetscFunctionBegin; 80ba8c8a56SBarry Smith if (row < rstart || row >= rend) SETERRQ(PETSC_ERR_SUP,"only local rows") 81ba8c8a56SBarry Smith lrow = row - rstart; 82ba8c8a56SBarry Smith ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt **)idx,(const PetscScalar **)v);CHKERRQ(ierr); 83ba8c8a56SBarry Smith PetscFunctionReturn(0); 84ba8c8a56SBarry Smith } 85ba8c8a56SBarry Smith 86ba8c8a56SBarry Smith #undef __FUNCT__ 87ba8c8a56SBarry Smith #define __FUNCT__ "MatRestoreRow_MPIDense" 88ba8c8a56SBarry Smith PetscErrorCode MatRestoreRow_MPIDense(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 89ba8c8a56SBarry Smith { 90ba8c8a56SBarry Smith PetscErrorCode ierr; 91ba8c8a56SBarry Smith 92ba8c8a56SBarry Smith PetscFunctionBegin; 93ba8c8a56SBarry Smith if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);} 94ba8c8a56SBarry Smith if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);} 95ba8c8a56SBarry Smith PetscFunctionReturn(0); 96ba8c8a56SBarry Smith } 97ba8c8a56SBarry Smith 980de54da6SSatish Balay EXTERN_C_BEGIN 994a2ae208SSatish Balay #undef __FUNCT__ 1004a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIDense" 101be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIDense(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *B) 1020de54da6SSatish Balay { 1030de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 1046849ba73SBarry Smith PetscErrorCode ierr; 105899cda47SBarry Smith PetscInt m = A->rmap.n,rstart = A->rmap.rstart; 10687828ca2SBarry Smith PetscScalar *array; 1070de54da6SSatish Balay MPI_Comm comm; 1080de54da6SSatish Balay 1090de54da6SSatish Balay PetscFunctionBegin; 110899cda47SBarry Smith if (A->rmap.N != A->cmap.N) SETERRQ(PETSC_ERR_SUP,"Only square matrices supported."); 1110de54da6SSatish Balay 1120de54da6SSatish Balay /* The reuse aspect is not implemented efficiently */ 1130de54da6SSatish Balay if (reuse) { ierr = MatDestroy(*B);CHKERRQ(ierr);} 1140de54da6SSatish Balay 1150de54da6SSatish Balay ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr); 1160de54da6SSatish Balay ierr = MatGetArray(mdn->A,&array);CHKERRQ(ierr); 117f69a0ea3SMatthew Knepley ierr = MatCreate(comm,B);CHKERRQ(ierr); 118f69a0ea3SMatthew Knepley ierr = MatSetSizes(*B,m,m,m,m);CHKERRQ(ierr); 1195c5985e7SKris Buschelman ierr = MatSetType(*B,mdn->A->type_name);CHKERRQ(ierr); 1205c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(*B,array+m*rstart);CHKERRQ(ierr); 1210de54da6SSatish Balay ierr = MatRestoreArray(mdn->A,&array);CHKERRQ(ierr); 1220de54da6SSatish Balay ierr = MatAssemblyBegin(*B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1230de54da6SSatish Balay ierr = MatAssemblyEnd(*B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1240de54da6SSatish Balay 1250de54da6SSatish Balay *iscopy = PETSC_TRUE; 1260de54da6SSatish Balay PetscFunctionReturn(0); 1270de54da6SSatish Balay } 1280de54da6SSatish Balay EXTERN_C_END 1290de54da6SSatish Balay 1304a2ae208SSatish Balay #undef __FUNCT__ 1314a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIDense" 13213f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 1338965ea79SLois Curfman McInnes { 13439b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 135dfbe8321SBarry Smith PetscErrorCode ierr; 136899cda47SBarry Smith PetscInt i,j,rstart = mat->rmap.rstart,rend = mat->rmap.rend,row; 137273d9f13SBarry Smith PetscTruth roworiented = A->roworiented; 1388965ea79SLois Curfman McInnes 1393a40ed3dSBarry Smith PetscFunctionBegin; 1408965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1415ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 142899cda47SBarry Smith if (idxm[i] >= mat->rmap.N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1438965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1448965ea79SLois Curfman McInnes row = idxm[i] - rstart; 14539b7565bSBarry Smith if (roworiented) { 14639b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr); 1473a40ed3dSBarry Smith } else { 1488965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1495ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 150899cda47SBarry Smith if (idxn[j] >= mat->cmap.N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 15139b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr); 15239b7565bSBarry Smith } 1538965ea79SLois Curfman McInnes } 1543a40ed3dSBarry Smith } else { 1553782ba37SSatish Balay if (!A->donotstash) { 15639b7565bSBarry Smith if (roworiented) { 1578798bf22SSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n);CHKERRQ(ierr); 158d36fbae8SSatish Balay } else { 1598798bf22SSatish Balay ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m);CHKERRQ(ierr); 16039b7565bSBarry Smith } 161b49de8d1SLois Curfman McInnes } 162b49de8d1SLois Curfman McInnes } 1633782ba37SSatish Balay } 1643a40ed3dSBarry Smith PetscFunctionReturn(0); 165b49de8d1SLois Curfman McInnes } 166b49de8d1SLois Curfman McInnes 1674a2ae208SSatish Balay #undef __FUNCT__ 1684a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIDense" 16913f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 170b49de8d1SLois Curfman McInnes { 171b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 172dfbe8321SBarry Smith PetscErrorCode ierr; 173899cda47SBarry Smith PetscInt i,j,rstart = mat->rmap.rstart,rend = mat->rmap.rend,row; 174b49de8d1SLois Curfman McInnes 1753a40ed3dSBarry Smith PetscFunctionBegin; 176b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 17729bbc08cSBarry Smith if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 178899cda47SBarry Smith if (idxm[i] >= mat->rmap.N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 179b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 180b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 181b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 18229bbc08cSBarry Smith if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); 183899cda47SBarry Smith if (idxn[j] >= mat->cmap.N) { 18429bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 185a8c6a408SBarry Smith } 186b49de8d1SLois Curfman McInnes ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr); 187b49de8d1SLois Curfman McInnes } 188a8c6a408SBarry Smith } else { 18929bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 1908965ea79SLois Curfman McInnes } 1918965ea79SLois Curfman McInnes } 1923a40ed3dSBarry Smith PetscFunctionReturn(0); 1938965ea79SLois Curfman McInnes } 1948965ea79SLois Curfman McInnes 1954a2ae208SSatish Balay #undef __FUNCT__ 1964a2ae208SSatish Balay #define __FUNCT__ "MatGetArray_MPIDense" 197dfbe8321SBarry Smith PetscErrorCode MatGetArray_MPIDense(Mat A,PetscScalar *array[]) 198ff14e315SSatish Balay { 199ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 200dfbe8321SBarry Smith PetscErrorCode ierr; 201ff14e315SSatish Balay 2023a40ed3dSBarry Smith PetscFunctionBegin; 203ff14e315SSatish Balay ierr = MatGetArray(a->A,array);CHKERRQ(ierr); 2043a40ed3dSBarry Smith PetscFunctionReturn(0); 205ff14e315SSatish Balay } 206ff14e315SSatish Balay 2074a2ae208SSatish Balay #undef __FUNCT__ 2084a2ae208SSatish Balay #define __FUNCT__ "MatGetSubMatrix_MPIDense" 20913f74950SBarry Smith static PetscErrorCode MatGetSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,PetscInt cs,MatReuse scall,Mat *B) 210ca3fa75bSLois Curfman McInnes { 211ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 212ca3fa75bSLois Curfman McInnes Mat_SeqDense *lmat = (Mat_SeqDense*)mat->A->data; 2136849ba73SBarry Smith PetscErrorCode ierr; 21413f74950SBarry Smith PetscInt i,j,*irow,*icol,rstart,rend,nrows,ncols,nlrows,nlcols; 21587828ca2SBarry Smith PetscScalar *av,*bv,*v = lmat->v; 216ca3fa75bSLois Curfman McInnes Mat newmat; 217ca3fa75bSLois Curfman McInnes 218ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 219ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 220ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(iscol,&icol);CHKERRQ(ierr); 221b9b97703SBarry Smith ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 222b9b97703SBarry Smith ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 223ca3fa75bSLois Curfman McInnes 224ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 2257eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 2267eba5e9cSLois Curfman McInnes original matrix! */ 227ca3fa75bSLois Curfman McInnes 228ca3fa75bSLois Curfman McInnes ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr); 2297eba5e9cSLois Curfman McInnes ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 230ca3fa75bSLois Curfman McInnes 231ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 232ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 23329bbc08cSBarry Smith /* SETERRQ(PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 2347eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 235ca3fa75bSLois Curfman McInnes newmat = *B; 236ca3fa75bSLois Curfman McInnes } else { 237ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 238f69a0ea3SMatthew Knepley ierr = MatCreate(A->comm,&newmat);CHKERRQ(ierr); 239f69a0ea3SMatthew Knepley ierr = MatSetSizes(newmat,nrows,cs,PETSC_DECIDE,ncols);CHKERRQ(ierr); 240878740d9SKris Buschelman ierr = MatSetType(newmat,A->type_name);CHKERRQ(ierr); 241878740d9SKris Buschelman ierr = MatMPIDenseSetPreallocation(newmat,PETSC_NULL);CHKERRQ(ierr); 242ca3fa75bSLois Curfman McInnes } 243ca3fa75bSLois Curfman McInnes 244ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 245ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 246ca3fa75bSLois Curfman McInnes bv = ((Mat_SeqDense *)newmatd->A->data)->v; 247ca3fa75bSLois Curfman McInnes 248ca3fa75bSLois Curfman McInnes for (i=0; i<ncols; i++) { 249ca3fa75bSLois Curfman McInnes av = v + nlrows*icol[i]; 250ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 2517eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 252ca3fa75bSLois Curfman McInnes } 253ca3fa75bSLois Curfman McInnes } 254ca3fa75bSLois Curfman McInnes 255ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 256ca3fa75bSLois Curfman McInnes ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 257ca3fa75bSLois Curfman McInnes ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 258ca3fa75bSLois Curfman McInnes 259ca3fa75bSLois Curfman McInnes /* Free work space */ 260ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 261ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(iscol,&icol);CHKERRQ(ierr); 262ca3fa75bSLois Curfman McInnes *B = newmat; 263ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 264ca3fa75bSLois Curfman McInnes } 265ca3fa75bSLois Curfman McInnes 2664a2ae208SSatish Balay #undef __FUNCT__ 2674a2ae208SSatish Balay #define __FUNCT__ "MatRestoreArray_MPIDense" 268dfbe8321SBarry Smith PetscErrorCode MatRestoreArray_MPIDense(Mat A,PetscScalar *array[]) 269ff14e315SSatish Balay { 2703a40ed3dSBarry Smith PetscFunctionBegin; 2713a40ed3dSBarry Smith PetscFunctionReturn(0); 272ff14e315SSatish Balay } 273ff14e315SSatish Balay 2744a2ae208SSatish Balay #undef __FUNCT__ 2754a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIDense" 276dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 2778965ea79SLois Curfman McInnes { 27839ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 2798965ea79SLois Curfman McInnes MPI_Comm comm = mat->comm; 280dfbe8321SBarry Smith PetscErrorCode ierr; 28113f74950SBarry Smith PetscInt nstash,reallocs; 2828965ea79SLois Curfman McInnes InsertMode addv; 2838965ea79SLois Curfman McInnes 2843a40ed3dSBarry Smith PetscFunctionBegin; 2858965ea79SLois Curfman McInnes /* make sure all processors are either in INSERTMODE or ADDMODE */ 286ca161407SBarry Smith ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,comm);CHKERRQ(ierr); 2877056b6fcSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) { 28829bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Cannot mix adds/inserts on different procs"); 2898965ea79SLois Curfman McInnes } 290e0fa3b82SLois Curfman McInnes mat->insertmode = addv; /* in case this processor had no cache */ 2918965ea79SLois Curfman McInnes 292899cda47SBarry Smith ierr = MatStashScatterBegin_Private(&mat->stash,mat->rmap.range);CHKERRQ(ierr); 2938798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 294ae15b995SBarry Smith ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 2953a40ed3dSBarry Smith PetscFunctionReturn(0); 2968965ea79SLois Curfman McInnes } 2978965ea79SLois Curfman McInnes 2984a2ae208SSatish Balay #undef __FUNCT__ 2994a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIDense" 300dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 3018965ea79SLois Curfman McInnes { 30239ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 3036849ba73SBarry Smith PetscErrorCode ierr; 30413f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 30513f74950SBarry Smith PetscMPIInt n; 30687828ca2SBarry Smith PetscScalar *val; 307e0fa3b82SLois Curfman McInnes InsertMode addv=mat->insertmode; 3088965ea79SLois Curfman McInnes 3093a40ed3dSBarry Smith PetscFunctionBegin; 3108965ea79SLois Curfman McInnes /* wait on receives */ 3117ef1d9bdSSatish Balay while (1) { 3128798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 3137ef1d9bdSSatish Balay if (!flg) break; 3148965ea79SLois Curfman McInnes 3157ef1d9bdSSatish Balay for (i=0; i<n;) { 3167ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 3177ef1d9bdSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 3187ef1d9bdSSatish Balay if (j < n) ncols = j-i; 3197ef1d9bdSSatish Balay else ncols = n-i; 3207ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 3217ef1d9bdSSatish Balay ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 3227ef1d9bdSSatish Balay i = j; 3238965ea79SLois Curfman McInnes } 3247ef1d9bdSSatish Balay } 3258798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 3268965ea79SLois Curfman McInnes 32739ddd567SLois Curfman McInnes ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr); 32839ddd567SLois Curfman McInnes ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr); 3298965ea79SLois Curfman McInnes 3306d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 33139ddd567SLois Curfman McInnes ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 3328965ea79SLois Curfman McInnes } 3333a40ed3dSBarry Smith PetscFunctionReturn(0); 3348965ea79SLois Curfman McInnes } 3358965ea79SLois Curfman McInnes 3364a2ae208SSatish Balay #undef __FUNCT__ 3374a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIDense" 338dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 3398965ea79SLois Curfman McInnes { 340dfbe8321SBarry Smith PetscErrorCode ierr; 34139ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3423a40ed3dSBarry Smith 3433a40ed3dSBarry Smith PetscFunctionBegin; 3443a40ed3dSBarry Smith ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 3453a40ed3dSBarry Smith PetscFunctionReturn(0); 3468965ea79SLois Curfman McInnes } 3478965ea79SLois Curfman McInnes 3488965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the 3498965ea79SLois Curfman McInnes matrix is square and the column and row owerships are identical. 3508965ea79SLois Curfman McInnes This is a BUG. The only way to fix it seems to be to access 3513501a2bdSLois Curfman McInnes mdn->A and mdn->B directly and not through the MatZeroRows() 3528965ea79SLois Curfman McInnes routine. 3538965ea79SLois Curfman McInnes */ 3544a2ae208SSatish Balay #undef __FUNCT__ 3554a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIDense" 356f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag) 3578965ea79SLois Curfman McInnes { 35839ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3596849ba73SBarry Smith PetscErrorCode ierr; 360899cda47SBarry Smith PetscInt i,*owners = A->rmap.range; 36113f74950SBarry Smith PetscInt *nprocs,j,idx,nsends; 36213f74950SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 36313f74950SBarry Smith PetscInt *rvalues,tag = A->tag,count,base,slen,*source; 36413f74950SBarry Smith PetscInt *lens,*lrows,*values; 36513f74950SBarry Smith PetscMPIInt n,imdex,rank = l->rank,size = l->size; 3668965ea79SLois Curfman McInnes MPI_Comm comm = A->comm; 3678965ea79SLois Curfman McInnes MPI_Request *send_waits,*recv_waits; 3688965ea79SLois Curfman McInnes MPI_Status recv_status,*send_status; 36935d8aa7fSBarry Smith PetscTruth found; 3708965ea79SLois Curfman McInnes 3713a40ed3dSBarry Smith PetscFunctionBegin; 3728965ea79SLois Curfman McInnes /* first count number of contributors to each processor */ 37313f74950SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 37413f74950SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 37513f74950SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/ 3768965ea79SLois Curfman McInnes for (i=0; i<N; i++) { 3778965ea79SLois Curfman McInnes idx = rows[i]; 37835d8aa7fSBarry Smith found = PETSC_FALSE; 3798965ea79SLois Curfman McInnes for (j=0; j<size; j++) { 3808965ea79SLois Curfman McInnes if (idx >= owners[j] && idx < owners[j+1]) { 381c1dc657dSBarry Smith nprocs[2*j]++; nprocs[2*j+1] = 1; owner[i] = j; found = PETSC_TRUE; break; 3828965ea79SLois Curfman McInnes } 3838965ea79SLois Curfman McInnes } 38429bbc08cSBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 3858965ea79SLois Curfman McInnes } 386c1dc657dSBarry Smith nsends = 0; for (i=0; i<size; i++) { nsends += nprocs[2*i+1];} 3878965ea79SLois Curfman McInnes 3888965ea79SLois Curfman McInnes /* inform other processors of number of messages and max length*/ 389c1dc657dSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 3908965ea79SLois Curfman McInnes 3918965ea79SLois Curfman McInnes /* post receives: */ 39213f74950SBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr); 393b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 3948965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 39513f74950SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 3968965ea79SLois Curfman McInnes } 3978965ea79SLois Curfman McInnes 3988965ea79SLois Curfman McInnes /* do sends: 3998965ea79SLois Curfman McInnes 1) starts[i] gives the starting index in svalues for stuff going to 4008965ea79SLois Curfman McInnes the ith processor 4018965ea79SLois Curfman McInnes */ 40213f74950SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr); 403b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 40413f74950SBarry Smith ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 4058965ea79SLois Curfman McInnes starts[0] = 0; 406c1dc657dSBarry Smith for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 4078965ea79SLois Curfman McInnes for (i=0; i<N; i++) { 4088965ea79SLois Curfman McInnes svalues[starts[owner[i]]++] = rows[i]; 4098965ea79SLois Curfman McInnes } 4108965ea79SLois Curfman McInnes 4118965ea79SLois Curfman McInnes starts[0] = 0; 412c1dc657dSBarry Smith for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 4138965ea79SLois Curfman McInnes count = 0; 4148965ea79SLois Curfman McInnes for (i=0; i<size; i++) { 415c1dc657dSBarry Smith if (nprocs[2*i+1]) { 41613f74950SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 4178965ea79SLois Curfman McInnes } 4188965ea79SLois Curfman McInnes } 419606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 4208965ea79SLois Curfman McInnes 4218965ea79SLois Curfman McInnes base = owners[rank]; 4228965ea79SLois Curfman McInnes 4238965ea79SLois Curfman McInnes /* wait on receives */ 42413f74950SBarry Smith ierr = PetscMalloc(2*(nrecvs+1)*sizeof(PetscInt),&lens);CHKERRQ(ierr); 4258965ea79SLois Curfman McInnes source = lens + nrecvs; 4268965ea79SLois Curfman McInnes count = nrecvs; slen = 0; 4278965ea79SLois Curfman McInnes while (count) { 428ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 4298965ea79SLois Curfman McInnes /* unpack receives into our local space */ 43013f74950SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 4318965ea79SLois Curfman McInnes source[imdex] = recv_status.MPI_SOURCE; 4328965ea79SLois Curfman McInnes lens[imdex] = n; 4338965ea79SLois Curfman McInnes slen += n; 4348965ea79SLois Curfman McInnes count--; 4358965ea79SLois Curfman McInnes } 436606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 4378965ea79SLois Curfman McInnes 4388965ea79SLois Curfman McInnes /* move the data into the send scatter */ 43913f74950SBarry Smith ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr); 4408965ea79SLois Curfman McInnes count = 0; 4418965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 4428965ea79SLois Curfman McInnes values = rvalues + i*nmax; 4438965ea79SLois Curfman McInnes for (j=0; j<lens[i]; j++) { 4448965ea79SLois Curfman McInnes lrows[count++] = values[j] - base; 4458965ea79SLois Curfman McInnes } 4468965ea79SLois Curfman McInnes } 447606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 448606d414cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 449606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 450606d414cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 4518965ea79SLois Curfman McInnes 4528965ea79SLois Curfman McInnes /* actually zap the local rows */ 453f4df32b1SMatthew Knepley ierr = MatZeroRows(l->A,slen,lrows,diag);CHKERRQ(ierr); 454606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 4558965ea79SLois Curfman McInnes 4568965ea79SLois Curfman McInnes /* wait on sends */ 4578965ea79SLois Curfman McInnes if (nsends) { 458b0a32e0cSBarry Smith ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 459ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 460606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 4618965ea79SLois Curfman McInnes } 462606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 463606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 4648965ea79SLois Curfman McInnes 4653a40ed3dSBarry Smith PetscFunctionReturn(0); 4668965ea79SLois Curfman McInnes } 4678965ea79SLois Curfman McInnes 4684a2ae208SSatish Balay #undef __FUNCT__ 4694a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIDense" 470dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4718965ea79SLois Curfman McInnes { 47239ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 473dfbe8321SBarry Smith PetscErrorCode ierr; 474c456f294SBarry Smith 4753a40ed3dSBarry Smith PetscFunctionBegin; 47643a90d84SBarry Smith ierr = VecScatterBegin(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr); 47743a90d84SBarry Smith ierr = VecScatterEnd(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr); 47844cd7ae7SLois Curfman McInnes ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy);CHKERRQ(ierr); 4793a40ed3dSBarry Smith PetscFunctionReturn(0); 4808965ea79SLois Curfman McInnes } 4818965ea79SLois Curfman McInnes 4824a2ae208SSatish Balay #undef __FUNCT__ 4834a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIDense" 484dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4858965ea79SLois Curfman McInnes { 48639ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 487dfbe8321SBarry Smith PetscErrorCode ierr; 488c456f294SBarry Smith 4893a40ed3dSBarry Smith PetscFunctionBegin; 49043a90d84SBarry Smith ierr = VecScatterBegin(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr); 49143a90d84SBarry Smith ierr = VecScatterEnd(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr); 49244cd7ae7SLois Curfman McInnes ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr); 4933a40ed3dSBarry Smith PetscFunctionReturn(0); 4948965ea79SLois Curfman McInnes } 4958965ea79SLois Curfman McInnes 4964a2ae208SSatish Balay #undef __FUNCT__ 4974a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIDense" 498dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 499096963f5SLois Curfman McInnes { 500096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 501dfbe8321SBarry Smith PetscErrorCode ierr; 50287828ca2SBarry Smith PetscScalar zero = 0.0; 503096963f5SLois Curfman McInnes 5043a40ed3dSBarry Smith PetscFunctionBegin; 5052dcb1b2aSMatthew Knepley ierr = VecSet(yy,zero);CHKERRQ(ierr); 5067c922b88SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 507537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 508537820f0SBarry Smith ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 5093a40ed3dSBarry Smith PetscFunctionReturn(0); 510096963f5SLois Curfman McInnes } 511096963f5SLois Curfman McInnes 5124a2ae208SSatish Balay #undef __FUNCT__ 5134a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIDense" 514dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 515096963f5SLois Curfman McInnes { 516096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 517dfbe8321SBarry Smith PetscErrorCode ierr; 518096963f5SLois Curfman McInnes 5193a40ed3dSBarry Smith PetscFunctionBegin; 5203501a2bdSLois Curfman McInnes ierr = VecCopy(yy,zz);CHKERRQ(ierr); 5217c922b88SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 522537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 523537820f0SBarry Smith ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 5243a40ed3dSBarry Smith PetscFunctionReturn(0); 525096963f5SLois Curfman McInnes } 526096963f5SLois Curfman McInnes 5274a2ae208SSatish Balay #undef __FUNCT__ 5284a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIDense" 529dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5308965ea79SLois Curfman McInnes { 53139ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 532096963f5SLois Curfman McInnes Mat_SeqDense *aloc = (Mat_SeqDense*)a->A->data; 533dfbe8321SBarry Smith PetscErrorCode ierr; 534899cda47SBarry Smith PetscInt len,i,n,m = A->rmap.n,radd; 53587828ca2SBarry Smith PetscScalar *x,zero = 0.0; 536ed3cc1f0SBarry Smith 5373a40ed3dSBarry Smith PetscFunctionBegin; 5382dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 5391ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 540096963f5SLois Curfman McInnes ierr = VecGetSize(v,&n);CHKERRQ(ierr); 541899cda47SBarry Smith if (n != A->rmap.N) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 542899cda47SBarry Smith len = PetscMin(a->A->rmap.n,a->A->cmap.n); 543899cda47SBarry Smith radd = A->rmap.rstart*m; 54444cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 545096963f5SLois Curfman McInnes x[i] = aloc->v[radd + i*m + i]; 546096963f5SLois Curfman McInnes } 5471ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 5483a40ed3dSBarry Smith PetscFunctionReturn(0); 5498965ea79SLois Curfman McInnes } 5508965ea79SLois Curfman McInnes 5514a2ae208SSatish Balay #undef __FUNCT__ 5524a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIDense" 553dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5548965ea79SLois Curfman McInnes { 5553501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 556dfbe8321SBarry Smith PetscErrorCode ierr; 557ed3cc1f0SBarry Smith 5583a40ed3dSBarry Smith PetscFunctionBegin; 55994d884c6SBarry Smith 560aa482453SBarry Smith #if defined(PETSC_USE_LOG) 561899cda47SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap.N,mat->cmap.N); 5628965ea79SLois Curfman McInnes #endif 5638798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 5643501a2bdSLois Curfman McInnes ierr = MatDestroy(mdn->A);CHKERRQ(ierr); 56505b42c5fSBarry Smith if (mdn->lvec) {ierr = VecDestroy(mdn->lvec);CHKERRQ(ierr);} 56605b42c5fSBarry Smith if (mdn->Mvctx) {ierr = VecScatterDestroy(mdn->Mvctx);CHKERRQ(ierr);} 567622d7880SLois Curfman McInnes if (mdn->factor) { 56805b42c5fSBarry Smith ierr = PetscFree(mdn->factor->temp);CHKERRQ(ierr); 56905b42c5fSBarry Smith ierr = PetscFree(mdn->factor->tag);CHKERRQ(ierr); 57005b42c5fSBarry Smith ierr = PetscFree(mdn->factor->pivots);CHKERRQ(ierr); 571606d414cSSatish Balay ierr = PetscFree(mdn->factor);CHKERRQ(ierr); 572622d7880SLois Curfman McInnes } 573606d414cSSatish Balay ierr = PetscFree(mdn);CHKERRQ(ierr); 574901853e0SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 575901853e0SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMPIDenseSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 5764ae313f4SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C","",PETSC_NULL);CHKERRQ(ierr); 5774ae313f4SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C","",PETSC_NULL);CHKERRQ(ierr); 5784ae313f4SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C","",PETSC_NULL);CHKERRQ(ierr); 5793a40ed3dSBarry Smith PetscFunctionReturn(0); 5808965ea79SLois Curfman McInnes } 58139ddd567SLois Curfman McInnes 5824a2ae208SSatish Balay #undef __FUNCT__ 5834a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_Binary" 5846849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_Binary(Mat mat,PetscViewer viewer) 5858965ea79SLois Curfman McInnes { 58639ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 587dfbe8321SBarry Smith PetscErrorCode ierr; 5887056b6fcSBarry Smith 5893a40ed3dSBarry Smith PetscFunctionBegin; 59039ddd567SLois Curfman McInnes if (mdn->size == 1) { 59139ddd567SLois Curfman McInnes ierr = MatView(mdn->A,viewer);CHKERRQ(ierr); 5928965ea79SLois Curfman McInnes } 59329bbc08cSBarry Smith else SETERRQ(PETSC_ERR_SUP,"Only uniprocessor output supported"); 5943a40ed3dSBarry Smith PetscFunctionReturn(0); 5958965ea79SLois Curfman McInnes } 5968965ea79SLois Curfman McInnes 5974a2ae208SSatish Balay #undef __FUNCT__ 5984a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_ASCIIorDraworSocket" 5996849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 6008965ea79SLois Curfman McInnes { 60139ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 602dfbe8321SBarry Smith PetscErrorCode ierr; 60332dcc486SBarry Smith PetscMPIInt size = mdn->size,rank = mdn->rank; 604b0a32e0cSBarry Smith PetscViewerType vtype; 60532077d6dSBarry Smith PetscTruth iascii,isdraw; 606b0a32e0cSBarry Smith PetscViewer sviewer; 607f3ef73ceSBarry Smith PetscViewerFormat format; 6088965ea79SLois Curfman McInnes 6093a40ed3dSBarry Smith PetscFunctionBegin; 61032077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 611fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 61232077d6dSBarry Smith if (iascii) { 613b0a32e0cSBarry Smith ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr); 614b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 615456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6164e220ebcSLois Curfman McInnes MatInfo info; 617888f2ed8SSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 618899cda47SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap.n, 61977431f27SBarry Smith (PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr); 620b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6213501a2bdSLois Curfman McInnes ierr = VecScatterView(mdn->Mvctx,viewer);CHKERRQ(ierr); 6223a40ed3dSBarry Smith PetscFunctionReturn(0); 623fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6243a40ed3dSBarry Smith PetscFunctionReturn(0); 6258965ea79SLois Curfman McInnes } 626f1af5d2fSBarry Smith } else if (isdraw) { 627b0a32e0cSBarry Smith PetscDraw draw; 628f1af5d2fSBarry Smith PetscTruth isnull; 629f1af5d2fSBarry Smith 630b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 631b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 632f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 633f1af5d2fSBarry Smith } 63477ed5343SBarry Smith 6358965ea79SLois Curfman McInnes if (size == 1) { 63639ddd567SLois Curfman McInnes ierr = MatView(mdn->A,viewer);CHKERRQ(ierr); 6373a40ed3dSBarry Smith } else { 6388965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 6398965ea79SLois Curfman McInnes Mat A; 640899cda47SBarry Smith PetscInt M = mat->rmap.N,N = mat->cmap.N,m,row,i,nz; 641ba8c8a56SBarry Smith PetscInt *cols; 642ba8c8a56SBarry Smith PetscScalar *vals; 6438965ea79SLois Curfman McInnes 644f69a0ea3SMatthew Knepley ierr = MatCreate(mat->comm,&A);CHKERRQ(ierr); 6458965ea79SLois Curfman McInnes if (!rank) { 646f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 6473a40ed3dSBarry Smith } else { 648f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 6498965ea79SLois Curfman McInnes } 650be5d1d56SKris Buschelman /* Since this is a temporary matrix, MATMPIDENSE instead of A->type_name here is probably acceptable. */ 651878740d9SKris Buschelman ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr); 652878740d9SKris Buschelman ierr = MatMPIDenseSetPreallocation(A,PETSC_NULL); 65352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 6548965ea79SLois Curfman McInnes 65539ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 65639ddd567SLois Curfman McInnes but it's quick for now */ 65751022da4SBarry Smith A->insertmode = INSERT_VALUES; 658899cda47SBarry Smith row = mat->rmap.rstart; m = mdn->A->rmap.n; 6598965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 660ba8c8a56SBarry Smith ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 661ba8c8a56SBarry Smith ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 662ba8c8a56SBarry Smith ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 66339ddd567SLois Curfman McInnes row++; 6648965ea79SLois Curfman McInnes } 6658965ea79SLois Curfman McInnes 6666d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 6676d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 668b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 669b9b97703SBarry Smith if (!rank) { 6706831982aSBarry Smith ierr = MatView(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr); 6718965ea79SLois Curfman McInnes } 672b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 673b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6748965ea79SLois Curfman McInnes ierr = MatDestroy(A);CHKERRQ(ierr); 6758965ea79SLois Curfman McInnes } 6763a40ed3dSBarry Smith PetscFunctionReturn(0); 6778965ea79SLois Curfman McInnes } 6788965ea79SLois Curfman McInnes 6794a2ae208SSatish Balay #undef __FUNCT__ 6804a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense" 681dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 6828965ea79SLois Curfman McInnes { 683dfbe8321SBarry Smith PetscErrorCode ierr; 68432077d6dSBarry Smith PetscTruth iascii,isbinary,isdraw,issocket; 6858965ea79SLois Curfman McInnes 686433994e6SBarry Smith PetscFunctionBegin; 6870f5bd95cSBarry Smith 68832077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 689fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 690b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 691fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 6920f5bd95cSBarry Smith 69332077d6dSBarry Smith if (iascii || issocket || isdraw) { 694f1af5d2fSBarry Smith ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 6950f5bd95cSBarry Smith } else if (isbinary) { 6963a40ed3dSBarry Smith ierr = MatView_MPIDense_Binary(mat,viewer);CHKERRQ(ierr); 6975cd90555SBarry Smith } else { 698958c9bccSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPI dense matrix",((PetscObject)viewer)->type_name); 6998965ea79SLois Curfman McInnes } 7003a40ed3dSBarry Smith PetscFunctionReturn(0); 7018965ea79SLois Curfman McInnes } 7028965ea79SLois Curfman McInnes 7034a2ae208SSatish Balay #undef __FUNCT__ 7044a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIDense" 705dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 7068965ea79SLois Curfman McInnes { 7073501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7083501a2bdSLois Curfman McInnes Mat mdn = mat->A; 709dfbe8321SBarry Smith PetscErrorCode ierr; 710329f5518SBarry Smith PetscReal isend[5],irecv[5]; 7118965ea79SLois Curfman McInnes 7123a40ed3dSBarry Smith PetscFunctionBegin; 713899cda47SBarry Smith info->rows_global = (double)A->rmap.N; 714899cda47SBarry Smith info->columns_global = (double)A->cmap.N; 715899cda47SBarry Smith info->rows_local = (double)A->rmap.n; 716899cda47SBarry Smith info->columns_local = (double)A->cmap.N; 7174e220ebcSLois Curfman McInnes info->block_size = 1.0; 7184e220ebcSLois Curfman McInnes ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr); 7194e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 7204e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 7218965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7224e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7234e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7244e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7254e220ebcSLois Curfman McInnes info->memory = isend[3]; 7264e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7278965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 728d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,A->comm);CHKERRQ(ierr); 7294e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7304e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7314e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7324e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7334e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7348965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 735d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,A->comm);CHKERRQ(ierr); 7364e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7374e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7384e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7394e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7404e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7418965ea79SLois Curfman McInnes } 7424e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 7434e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 7444e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 7453a40ed3dSBarry Smith PetscFunctionReturn(0); 7468965ea79SLois Curfman McInnes } 7478965ea79SLois Curfman McInnes 7484a2ae208SSatish Balay #undef __FUNCT__ 7494a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIDense" 750dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op) 7518965ea79SLois Curfman McInnes { 75239ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 753dfbe8321SBarry Smith PetscErrorCode ierr; 7548965ea79SLois Curfman McInnes 7553a40ed3dSBarry Smith PetscFunctionBegin; 75612c028f9SKris Buschelman switch (op) { 75712c028f9SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 75812c028f9SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 75912c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 76012c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 76112c028f9SKris Buschelman case MAT_COLUMNS_SORTED: 76212c028f9SKris Buschelman case MAT_COLUMNS_UNSORTED: 763273d9f13SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 76412c028f9SKris Buschelman break; 76512c028f9SKris Buschelman case MAT_ROW_ORIENTED: 766273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 767273d9f13SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 76812c028f9SKris Buschelman break; 76912c028f9SKris Buschelman case MAT_ROWS_SORTED: 77012c028f9SKris Buschelman case MAT_ROWS_UNSORTED: 77112c028f9SKris Buschelman case MAT_YES_NEW_DIAGONALS: 77212c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 773ad86a440SBarry Smith ierr = PetscInfo1(A,"Option %d ignored\n",op);CHKERRQ(ierr); 77412c028f9SKris Buschelman break; 77512c028f9SKris Buschelman case MAT_COLUMN_ORIENTED: 776273d9f13SBarry Smith a->roworiented = PETSC_FALSE; 777273d9f13SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 77812c028f9SKris Buschelman break; 77912c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 780273d9f13SBarry Smith a->donotstash = PETSC_TRUE; 78112c028f9SKris Buschelman break; 78212c028f9SKris Buschelman case MAT_NO_NEW_DIAGONALS: 78329bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 78477e54ba9SKris Buschelman case MAT_SYMMETRIC: 78577e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 7869a4540c5SBarry Smith case MAT_NOT_SYMMETRIC: 7879a4540c5SBarry Smith case MAT_NOT_STRUCTURALLY_SYMMETRIC: 7889a4540c5SBarry Smith case MAT_HERMITIAN: 7899a4540c5SBarry Smith case MAT_NOT_HERMITIAN: 7909a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 7919a4540c5SBarry Smith case MAT_NOT_SYMMETRY_ETERNAL: 79277e54ba9SKris Buschelman break; 79312c028f9SKris Buschelman default: 794ad86a440SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op); 7953a40ed3dSBarry Smith } 7963a40ed3dSBarry Smith PetscFunctionReturn(0); 7978965ea79SLois Curfman McInnes } 7988965ea79SLois Curfman McInnes 7998965ea79SLois Curfman McInnes 8004a2ae208SSatish Balay #undef __FUNCT__ 8014a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIDense" 802dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 8035b2fa520SLois Curfman McInnes { 8045b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 8055b2fa520SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 80687828ca2SBarry Smith PetscScalar *l,*r,x,*v; 807dfbe8321SBarry Smith PetscErrorCode ierr; 808899cda47SBarry Smith PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap.n,n=mdn->A->cmap.n; 8095b2fa520SLois Curfman McInnes 8105b2fa520SLois Curfman McInnes PetscFunctionBegin; 81172d926a5SLois Curfman McInnes ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr); 8125b2fa520SLois Curfman McInnes if (ll) { 81372d926a5SLois Curfman McInnes ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr); 814175be7b4SMatthew Knepley if (s2a != s2) SETERRQ2(PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %d != %d.", s2a, s2); 8151ebc52fbSHong Zhang ierr = VecGetArray(ll,&l);CHKERRQ(ierr); 8165b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 8175b2fa520SLois Curfman McInnes x = l[i]; 8185b2fa520SLois Curfman McInnes v = mat->v + i; 8195b2fa520SLois Curfman McInnes for (j=0; j<n; j++) { (*v) *= x; v+= m;} 8205b2fa520SLois Curfman McInnes } 8211ebc52fbSHong Zhang ierr = VecRestoreArray(ll,&l);CHKERRQ(ierr); 822efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 8235b2fa520SLois Curfman McInnes } 8245b2fa520SLois Curfman McInnes if (rr) { 825175be7b4SMatthew Knepley ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr); 826175be7b4SMatthew Knepley if (s3a != s3) SETERRQ2(PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3); 8275b2fa520SLois Curfman McInnes ierr = VecScatterBegin(rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr); 8285b2fa520SLois Curfman McInnes ierr = VecScatterEnd(rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr); 8291ebc52fbSHong Zhang ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr); 8305b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 8315b2fa520SLois Curfman McInnes x = r[i]; 8325b2fa520SLois Curfman McInnes v = mat->v + i*m; 8335b2fa520SLois Curfman McInnes for (j=0; j<m; j++) { (*v++) *= x;} 8345b2fa520SLois Curfman McInnes } 8351ebc52fbSHong Zhang ierr = VecRestoreArray(mdn->lvec,&r);CHKERRQ(ierr); 836efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 8375b2fa520SLois Curfman McInnes } 8385b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8395b2fa520SLois Curfman McInnes } 8405b2fa520SLois Curfman McInnes 8414a2ae208SSatish Balay #undef __FUNCT__ 8424a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIDense" 843dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 844096963f5SLois Curfman McInnes { 8453501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 8463501a2bdSLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 847dfbe8321SBarry Smith PetscErrorCode ierr; 84813f74950SBarry Smith PetscInt i,j; 849329f5518SBarry Smith PetscReal sum = 0.0; 85087828ca2SBarry Smith PetscScalar *v = mat->v; 8513501a2bdSLois Curfman McInnes 8523a40ed3dSBarry Smith PetscFunctionBegin; 8533501a2bdSLois Curfman McInnes if (mdn->size == 1) { 854064f8208SBarry Smith ierr = MatNorm(mdn->A,type,nrm);CHKERRQ(ierr); 8553501a2bdSLois Curfman McInnes } else { 8563501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 857899cda47SBarry Smith for (i=0; i<mdn->A->cmap.n*mdn->A->rmap.n; i++) { 858aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 859329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 8603501a2bdSLois Curfman McInnes #else 8613501a2bdSLois Curfman McInnes sum += (*v)*(*v); v++; 8623501a2bdSLois Curfman McInnes #endif 8633501a2bdSLois Curfman McInnes } 864064f8208SBarry Smith ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,A->comm);CHKERRQ(ierr); 865064f8208SBarry Smith *nrm = sqrt(*nrm); 866899cda47SBarry Smith ierr = PetscLogFlops(2*mdn->A->cmap.n*mdn->A->rmap.n);CHKERRQ(ierr); 8673a40ed3dSBarry Smith } else if (type == NORM_1) { 868329f5518SBarry Smith PetscReal *tmp,*tmp2; 869899cda47SBarry Smith ierr = PetscMalloc(2*A->cmap.N*sizeof(PetscReal),&tmp);CHKERRQ(ierr); 870899cda47SBarry Smith tmp2 = tmp + A->cmap.N; 871899cda47SBarry Smith ierr = PetscMemzero(tmp,2*A->cmap.N*sizeof(PetscReal));CHKERRQ(ierr); 872064f8208SBarry Smith *nrm = 0.0; 8733501a2bdSLois Curfman McInnes v = mat->v; 874899cda47SBarry Smith for (j=0; j<mdn->A->cmap.n; j++) { 875899cda47SBarry Smith for (i=0; i<mdn->A->rmap.n; i++) { 87667e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 8773501a2bdSLois Curfman McInnes } 8783501a2bdSLois Curfman McInnes } 879899cda47SBarry Smith ierr = MPI_Allreduce(tmp,tmp2,A->cmap.N,MPIU_REAL,MPI_SUM,A->comm);CHKERRQ(ierr); 880899cda47SBarry Smith for (j=0; j<A->cmap.N; j++) { 881064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 8823501a2bdSLois Curfman McInnes } 883606d414cSSatish Balay ierr = PetscFree(tmp);CHKERRQ(ierr); 884899cda47SBarry Smith ierr = PetscLogFlops(A->cmap.n*A->rmap.n);CHKERRQ(ierr); 8853a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 886329f5518SBarry Smith PetscReal ntemp; 8873501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr); 888064f8208SBarry Smith ierr = MPI_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPI_MAX,A->comm);CHKERRQ(ierr); 8893a40ed3dSBarry Smith } else { 89029bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for two norm"); 8913501a2bdSLois Curfman McInnes } 8923501a2bdSLois Curfman McInnes } 8933a40ed3dSBarry Smith PetscFunctionReturn(0); 8943501a2bdSLois Curfman McInnes } 8953501a2bdSLois Curfman McInnes 8964a2ae208SSatish Balay #undef __FUNCT__ 8974a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIDense" 898dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,Mat *matout) 8993501a2bdSLois Curfman McInnes { 9003501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 9013501a2bdSLois Curfman McInnes Mat_SeqDense *Aloc = (Mat_SeqDense*)a->A->data; 9023501a2bdSLois Curfman McInnes Mat B; 903899cda47SBarry Smith PetscInt M = A->rmap.N,N = A->cmap.N,m,n,*rwork,rstart = A->rmap.rstart; 9046849ba73SBarry Smith PetscErrorCode ierr; 90513f74950SBarry Smith PetscInt j,i; 90687828ca2SBarry Smith PetscScalar *v; 9073501a2bdSLois Curfman McInnes 9083a40ed3dSBarry Smith PetscFunctionBegin; 9097c922b88SBarry Smith if (!matout && M != N) { 91029bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Supports square matrix only in-place"); 9117056b6fcSBarry Smith } 912f69a0ea3SMatthew Knepley ierr = MatCreate(A->comm,&B);CHKERRQ(ierr); 913f69a0ea3SMatthew Knepley ierr = MatSetSizes(B,PETSC_DECIDE,PETSC_DECIDE,N,M);CHKERRQ(ierr); 914878740d9SKris Buschelman ierr = MatSetType(B,A->type_name);CHKERRQ(ierr); 915878740d9SKris Buschelman ierr = MatMPIDenseSetPreallocation(B,PETSC_NULL);CHKERRQ(ierr); 9163501a2bdSLois Curfman McInnes 917899cda47SBarry Smith m = a->A->rmap.n; n = a->A->cmap.n; v = Aloc->v; 91813f74950SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&rwork);CHKERRQ(ierr); 9193501a2bdSLois Curfman McInnes for (j=0; j<n; j++) { 9203501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 9213501a2bdSLois Curfman McInnes ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr); 9223501a2bdSLois Curfman McInnes v += m; 9233501a2bdSLois Curfman McInnes } 924606d414cSSatish Balay ierr = PetscFree(rwork);CHKERRQ(ierr); 9256d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9266d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9277c922b88SBarry Smith if (matout) { 9283501a2bdSLois Curfman McInnes *matout = B; 9293501a2bdSLois Curfman McInnes } else { 930273d9f13SBarry Smith ierr = MatHeaderCopy(A,B);CHKERRQ(ierr); 9313501a2bdSLois Curfman McInnes } 9323a40ed3dSBarry Smith PetscFunctionReturn(0); 933096963f5SLois Curfman McInnes } 934096963f5SLois Curfman McInnes 935d9eff348SSatish Balay #include "petscblaslapack.h" 9364a2ae208SSatish Balay #undef __FUNCT__ 9374a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIDense" 938f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIDense(Mat inA,PetscScalar alpha) 93944cd7ae7SLois Curfman McInnes { 94044cd7ae7SLois Curfman McInnes Mat_MPIDense *A = (Mat_MPIDense*)inA->data; 94144cd7ae7SLois Curfman McInnes Mat_SeqDense *a = (Mat_SeqDense*)A->A->data; 942f4df32b1SMatthew Knepley PetscScalar oalpha = alpha; 943899cda47SBarry Smith PetscBLASInt one = 1,nz = (PetscBLASInt)inA->rmap.n*inA->cmap.N; 944efee365bSSatish Balay PetscErrorCode ierr; 94544cd7ae7SLois Curfman McInnes 9463a40ed3dSBarry Smith PetscFunctionBegin; 947f4df32b1SMatthew Knepley BLASscal_(&nz,&oalpha,a->v,&one); 948efee365bSSatish Balay ierr = PetscLogFlops(nz);CHKERRQ(ierr); 9493a40ed3dSBarry Smith PetscFunctionReturn(0); 95044cd7ae7SLois Curfman McInnes } 95144cd7ae7SLois Curfman McInnes 9526849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat *); 9538965ea79SLois Curfman McInnes 9544a2ae208SSatish Balay #undef __FUNCT__ 9554a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIDense" 956dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIDense(Mat A) 957273d9f13SBarry Smith { 958dfbe8321SBarry Smith PetscErrorCode ierr; 959273d9f13SBarry Smith 960273d9f13SBarry Smith PetscFunctionBegin; 961273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr); 962273d9f13SBarry Smith PetscFunctionReturn(0); 963273d9f13SBarry Smith } 964273d9f13SBarry Smith 9654ae313f4SHong Zhang #undef __FUNCT__ 9664ae313f4SHong Zhang #define __FUNCT__ "MatMatMultSymbolic_MPIDense_MPIDense" 9674ae313f4SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C) 9684ae313f4SHong Zhang { 9694ae313f4SHong Zhang PetscErrorCode ierr; 9704ae313f4SHong Zhang PetscInt m=A->rmap.n,n=B->cmap.n; 9714ae313f4SHong Zhang Mat Cmat; 9724ae313f4SHong Zhang 9734ae313f4SHong Zhang PetscFunctionBegin; 9744ae313f4SHong Zhang if (A->cmap.n != B->rmap.n) SETERRQ2(PETSC_ERR_ARG_SIZ,"A->cmap.n %d != B->rmap.n %d\n",A->cmap.n,B->rmap.n); 9754ae313f4SHong Zhang ierr = MatCreate(B->comm,&Cmat);CHKERRQ(ierr); 9764ae313f4SHong Zhang ierr = MatSetSizes(Cmat,m,n,A->rmap.N,B->cmap.N);CHKERRQ(ierr); 9774ae313f4SHong Zhang ierr = MatSetType(Cmat,MATMPIDENSE);CHKERRQ(ierr); 9784ae313f4SHong Zhang ierr = MatMPIDenseSetPreallocation(Cmat,PETSC_NULL);CHKERRQ(ierr); 979*2a6744ebSBarry Smith ierr = MatAssemblyBegin(Cmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 980*2a6744ebSBarry Smith ierr = MatAssemblyEnd(Cmatg,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9814ae313f4SHong Zhang *C = Cmat; 9824ae313f4SHong Zhang PetscFunctionReturn(0); 9834ae313f4SHong Zhang } 9844ae313f4SHong Zhang 9858965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 98609dc0095SBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIDense, 98709dc0095SBarry Smith MatGetRow_MPIDense, 98809dc0095SBarry Smith MatRestoreRow_MPIDense, 98909dc0095SBarry Smith MatMult_MPIDense, 99097304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 9917c922b88SBarry Smith MatMultTranspose_MPIDense, 9927c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 9938965ea79SLois Curfman McInnes 0, 99409dc0095SBarry Smith 0, 99509dc0095SBarry Smith 0, 99697304618SKris Buschelman /*10*/ 0, 99709dc0095SBarry Smith 0, 99809dc0095SBarry Smith 0, 99909dc0095SBarry Smith 0, 100009dc0095SBarry Smith MatTranspose_MPIDense, 100197304618SKris Buschelman /*15*/ MatGetInfo_MPIDense, 10026e4ee0c6SHong Zhang MatEqual_MPIDense, 100309dc0095SBarry Smith MatGetDiagonal_MPIDense, 10045b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 100509dc0095SBarry Smith MatNorm_MPIDense, 100697304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIDense, 100709dc0095SBarry Smith MatAssemblyEnd_MPIDense, 100809dc0095SBarry Smith 0, 100909dc0095SBarry Smith MatSetOption_MPIDense, 101009dc0095SBarry Smith MatZeroEntries_MPIDense, 101197304618SKris Buschelman /*25*/ MatZeroRows_MPIDense, 10120ad19415SHong Zhang MatLUFactorSymbolic_MPIDense, 1013919b68f7SBarry Smith 0, 10140ad19415SHong Zhang MatCholeskyFactorSymbolic_MPIDense, 1015919b68f7SBarry Smith 0, 101697304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPIDense, 1017273d9f13SBarry Smith 0, 101809dc0095SBarry Smith 0, 101909dc0095SBarry Smith MatGetArray_MPIDense, 102009dc0095SBarry Smith MatRestoreArray_MPIDense, 102197304618SKris Buschelman /*35*/ MatDuplicate_MPIDense, 102209dc0095SBarry Smith 0, 102309dc0095SBarry Smith 0, 102409dc0095SBarry Smith 0, 102509dc0095SBarry Smith 0, 102697304618SKris Buschelman /*40*/ 0, 10272ce60cd0SSatish Balay MatGetSubMatrices_MPIDense, 102809dc0095SBarry Smith 0, 102909dc0095SBarry Smith MatGetValues_MPIDense, 103009dc0095SBarry Smith 0, 103197304618SKris Buschelman /*45*/ 0, 103209dc0095SBarry Smith MatScale_MPIDense, 103309dc0095SBarry Smith 0, 103409dc0095SBarry Smith 0, 103509dc0095SBarry Smith 0, 1036521d7252SBarry Smith /*50*/ 0, 103709dc0095SBarry Smith 0, 103809dc0095SBarry Smith 0, 103909dc0095SBarry Smith 0, 104009dc0095SBarry Smith 0, 104197304618SKris Buschelman /*55*/ 0, 104209dc0095SBarry Smith 0, 104309dc0095SBarry Smith 0, 104409dc0095SBarry Smith 0, 104509dc0095SBarry Smith 0, 104697304618SKris Buschelman /*60*/ MatGetSubMatrix_MPIDense, 1047b9b97703SBarry Smith MatDestroy_MPIDense, 1048b9b97703SBarry Smith MatView_MPIDense, 1049357abbc8SBarry Smith 0, 105097304618SKris Buschelman 0, 105197304618SKris Buschelman /*65*/ 0, 105297304618SKris Buschelman 0, 105397304618SKris Buschelman 0, 105497304618SKris Buschelman 0, 105597304618SKris Buschelman 0, 105697304618SKris Buschelman /*70*/ 0, 105797304618SKris Buschelman 0, 105897304618SKris Buschelman 0, 105997304618SKris Buschelman 0, 106097304618SKris Buschelman 0, 106197304618SKris Buschelman /*75*/ 0, 106297304618SKris Buschelman 0, 106397304618SKris Buschelman 0, 106497304618SKris Buschelman 0, 106597304618SKris Buschelman 0, 106697304618SKris Buschelman /*80*/ 0, 106797304618SKris Buschelman 0, 106897304618SKris Buschelman 0, 106997304618SKris Buschelman 0, 1070865e5f61SKris Buschelman /*84*/ MatLoad_MPIDense, 1071865e5f61SKris Buschelman 0, 1072865e5f61SKris Buschelman 0, 1073865e5f61SKris Buschelman 0, 1074865e5f61SKris Buschelman 0, 1075865e5f61SKris Buschelman 0, 1076865e5f61SKris Buschelman /*90*/ 0, 10774ae313f4SHong Zhang MatMatMultSymbolic_MPIDense_MPIDense, 1078865e5f61SKris Buschelman 0, 1079865e5f61SKris Buschelman 0, 1080865e5f61SKris Buschelman 0, 1081865e5f61SKris Buschelman /*95*/ 0, 1082865e5f61SKris Buschelman 0, 1083865e5f61SKris Buschelman 0, 1084865e5f61SKris Buschelman 0}; 10858965ea79SLois Curfman McInnes 1086273d9f13SBarry Smith EXTERN_C_BEGIN 10874a2ae208SSatish Balay #undef __FUNCT__ 1088a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIDenseSetPreallocation_MPIDense" 1089be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1090a23d5eceSKris Buschelman { 1091a23d5eceSKris Buschelman Mat_MPIDense *a; 1092dfbe8321SBarry Smith PetscErrorCode ierr; 1093a23d5eceSKris Buschelman 1094a23d5eceSKris Buschelman PetscFunctionBegin; 1095a23d5eceSKris Buschelman mat->preallocated = PETSC_TRUE; 1096a23d5eceSKris Buschelman /* Note: For now, when data is specified above, this assumes the user correctly 1097a23d5eceSKris Buschelman allocates the local dense storage space. We should add error checking. */ 1098a23d5eceSKris Buschelman 1099a23d5eceSKris Buschelman a = (Mat_MPIDense*)mat->data; 1100f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr); 1101899cda47SBarry Smith ierr = MatSetSizes(a->A,mat->rmap.n,mat->cmap.N,mat->rmap.n,mat->cmap.N);CHKERRQ(ierr); 11025c5985e7SKris Buschelman ierr = MatSetType(a->A,MATSEQDENSE);CHKERRQ(ierr); 11035c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr); 110452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 1105a23d5eceSKris Buschelman PetscFunctionReturn(0); 1106a23d5eceSKris Buschelman } 1107a23d5eceSKris Buschelman EXTERN_C_END 1108a23d5eceSKris Buschelman 11090bad9183SKris Buschelman /*MC 1110fafad747SKris Buschelman MATMPIDENSE - MATMPIDENSE = "mpidense" - A matrix type to be used for distributed dense matrices. 11110bad9183SKris Buschelman 11120bad9183SKris Buschelman Options Database Keys: 11130bad9183SKris Buschelman . -mat_type mpidense - sets the matrix type to "mpidense" during a call to MatSetFromOptions() 11140bad9183SKris Buschelman 11150bad9183SKris Buschelman Level: beginner 11160bad9183SKris Buschelman 11170bad9183SKris Buschelman .seealso: MatCreateMPIDense 11180bad9183SKris Buschelman M*/ 11190bad9183SKris Buschelman 1120a23d5eceSKris Buschelman EXTERN_C_BEGIN 1121a23d5eceSKris Buschelman #undef __FUNCT__ 11224a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIDense" 1123be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIDense(Mat mat) 1124273d9f13SBarry Smith { 1125273d9f13SBarry Smith Mat_MPIDense *a; 1126dfbe8321SBarry Smith PetscErrorCode ierr; 1127273d9f13SBarry Smith 1128273d9f13SBarry Smith PetscFunctionBegin; 1129b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPIDense,&a);CHKERRQ(ierr); 1130b0a32e0cSBarry Smith mat->data = (void*)a; 1131273d9f13SBarry Smith ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1132273d9f13SBarry Smith mat->factor = 0; 1133273d9f13SBarry Smith mat->mapping = 0; 1134273d9f13SBarry Smith 1135273d9f13SBarry Smith a->factor = 0; 1136273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1137273d9f13SBarry Smith ierr = MPI_Comm_rank(mat->comm,&a->rank);CHKERRQ(ierr); 1138273d9f13SBarry Smith ierr = MPI_Comm_size(mat->comm,&a->size);CHKERRQ(ierr); 1139273d9f13SBarry Smith 1140899cda47SBarry Smith mat->rmap.bs = mat->cmap.bs = 1; 1141899cda47SBarry Smith ierr = PetscMapInitialize(mat->comm,&mat->rmap);CHKERRQ(ierr); 1142899cda47SBarry Smith ierr = PetscMapInitialize(mat->comm,&mat->cmap);CHKERRQ(ierr); 1143899cda47SBarry Smith a->nvec = mat->cmap.n; 1144273d9f13SBarry Smith 1145273d9f13SBarry Smith /* build cache for off array entries formed */ 1146273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 1147273d9f13SBarry Smith ierr = MatStashCreate_Private(mat->comm,1,&mat->stash);CHKERRQ(ierr); 1148273d9f13SBarry Smith 1149273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1150273d9f13SBarry Smith a->lvec = 0; 1151273d9f13SBarry Smith a->Mvctx = 0; 1152273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1153273d9f13SBarry Smith 1154273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatGetDiagonalBlock_C", 1155273d9f13SBarry Smith "MatGetDiagonalBlock_MPIDense", 1156273d9f13SBarry Smith MatGetDiagonalBlock_MPIDense);CHKERRQ(ierr); 1157a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMPIDenseSetPreallocation_C", 1158a23d5eceSKris Buschelman "MatMPIDenseSetPreallocation_MPIDense", 1159a23d5eceSKris Buschelman MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr); 11604ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C", 11614ae313f4SHong Zhang "MatMatMult_MPIAIJ_MPIDense", 11624ae313f4SHong Zhang MatMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr); 11634ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C", 11644ae313f4SHong Zhang "MatMatMultSymbolic_MPIAIJ_MPIDense", 11654ae313f4SHong Zhang MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 11664ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C", 11674ae313f4SHong Zhang "MatMatMultNumeric_MPIAIJ_MPIDense", 11684ae313f4SHong Zhang MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 1169273d9f13SBarry Smith PetscFunctionReturn(0); 1170273d9f13SBarry Smith } 1171273d9f13SBarry Smith EXTERN_C_END 1172273d9f13SBarry Smith 1173209238afSKris Buschelman /*MC 1174002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1175209238afSKris Buschelman 1176209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 1177209238afSKris Buschelman and MATMPIDENSE otherwise. 1178209238afSKris Buschelman 1179209238afSKris Buschelman Options Database Keys: 1180209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 1181209238afSKris Buschelman 1182209238afSKris Buschelman Level: beginner 1183209238afSKris Buschelman 1184209238afSKris Buschelman .seealso: MatCreateMPIDense,MATSEQDENSE,MATMPIDENSE 1185209238afSKris Buschelman M*/ 1186209238afSKris Buschelman 1187209238afSKris Buschelman EXTERN_C_BEGIN 1188209238afSKris Buschelman #undef __FUNCT__ 1189209238afSKris Buschelman #define __FUNCT__ "MatCreate_Dense" 1190be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_Dense(Mat A) 1191dfbe8321SBarry Smith { 11926849ba73SBarry Smith PetscErrorCode ierr; 119313f74950SBarry Smith PetscMPIInt size; 1194209238afSKris Buschelman 1195209238afSKris Buschelman PetscFunctionBegin; 1196209238afSKris Buschelman ierr = PetscObjectChangeTypeName((PetscObject)A,MATDENSE);CHKERRQ(ierr); 1197209238afSKris Buschelman ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 1198209238afSKris Buschelman if (size == 1) { 1199209238afSKris Buschelman ierr = MatSetType(A,MATSEQDENSE);CHKERRQ(ierr); 1200209238afSKris Buschelman } else { 1201209238afSKris Buschelman ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr); 1202209238afSKris Buschelman } 1203209238afSKris Buschelman PetscFunctionReturn(0); 1204209238afSKris Buschelman } 1205209238afSKris Buschelman EXTERN_C_END 1206209238afSKris Buschelman 12074a2ae208SSatish Balay #undef __FUNCT__ 12084a2ae208SSatish Balay #define __FUNCT__ "MatMPIDenseSetPreallocation" 1209273d9f13SBarry Smith /*@C 1210273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1211273d9f13SBarry Smith 1212273d9f13SBarry Smith Not collective 1213273d9f13SBarry Smith 1214273d9f13SBarry Smith Input Parameters: 1215273d9f13SBarry Smith . A - the matrix 1216273d9f13SBarry Smith - data - optional location of matrix data. Set data=PETSC_NULL for PETSc 1217273d9f13SBarry Smith to control all matrix memory allocation. 1218273d9f13SBarry Smith 1219273d9f13SBarry Smith Notes: 1220273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 1221273d9f13SBarry Smith storage by columns. 1222273d9f13SBarry Smith 1223273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1224273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 1225273d9f13SBarry Smith set data=PETSC_NULL. 1226273d9f13SBarry Smith 1227273d9f13SBarry Smith Level: intermediate 1228273d9f13SBarry Smith 1229273d9f13SBarry Smith .keywords: matrix,dense, parallel 1230273d9f13SBarry Smith 1231273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 1232273d9f13SBarry Smith @*/ 1233be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIDenseSetPreallocation(Mat mat,PetscScalar *data) 1234273d9f13SBarry Smith { 1235dfbe8321SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscScalar *); 1236273d9f13SBarry Smith 1237273d9f13SBarry Smith PetscFunctionBegin; 1238565567f0SKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1239a23d5eceSKris Buschelman if (f) { 1240a23d5eceSKris Buschelman ierr = (*f)(mat,data);CHKERRQ(ierr); 1241a23d5eceSKris Buschelman } 1242273d9f13SBarry Smith PetscFunctionReturn(0); 1243273d9f13SBarry Smith } 1244273d9f13SBarry Smith 12454a2ae208SSatish Balay #undef __FUNCT__ 12464a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIDense" 12478965ea79SLois Curfman McInnes /*@C 124839ddd567SLois Curfman McInnes MatCreateMPIDense - Creates a sparse parallel matrix in dense format. 12498965ea79SLois Curfman McInnes 1250db81eaa0SLois Curfman McInnes Collective on MPI_Comm 1251db81eaa0SLois Curfman McInnes 12528965ea79SLois Curfman McInnes Input Parameters: 1253db81eaa0SLois Curfman McInnes + comm - MPI communicator 12548965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1255db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 12568965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 1257db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 12587f5ff6fdSBarry Smith - data - optional location of matrix data. Set data=PETSC_NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc 1259dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 12608965ea79SLois Curfman McInnes 12618965ea79SLois Curfman McInnes Output Parameter: 1262477f1c0bSLois Curfman McInnes . A - the matrix 12638965ea79SLois Curfman McInnes 1264b259b22eSLois Curfman McInnes Notes: 126539ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 126639ddd567SLois Curfman McInnes storage by columns. 12678965ea79SLois Curfman McInnes 126818f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 126918f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 12707f5ff6fdSBarry Smith set data=PETSC_NULL (PETSC_NULL_SCALAR for Fortran users). 127118f449edSLois Curfman McInnes 12728965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 12738965ea79SLois Curfman McInnes (possibly both). 12748965ea79SLois Curfman McInnes 1275027ccd11SLois Curfman McInnes Level: intermediate 1276027ccd11SLois Curfman McInnes 127739ddd567SLois Curfman McInnes .keywords: matrix,dense, parallel 12788965ea79SLois Curfman McInnes 127939ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 12808965ea79SLois Curfman McInnes @*/ 1281be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 12828965ea79SLois Curfman McInnes { 12836849ba73SBarry Smith PetscErrorCode ierr; 128413f74950SBarry Smith PetscMPIInt size; 12858965ea79SLois Curfman McInnes 12863a40ed3dSBarry Smith PetscFunctionBegin; 1287f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 1288f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 1289273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1290273d9f13SBarry Smith if (size > 1) { 1291273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr); 1292273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr); 1293273d9f13SBarry Smith } else { 1294273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 1295273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 12968c469469SLois Curfman McInnes } 12973a40ed3dSBarry Smith PetscFunctionReturn(0); 12988965ea79SLois Curfman McInnes } 12998965ea79SLois Curfman McInnes 13004a2ae208SSatish Balay #undef __FUNCT__ 13014a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIDense" 13026849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 13038965ea79SLois Curfman McInnes { 13048965ea79SLois Curfman McInnes Mat mat; 13053501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 1306dfbe8321SBarry Smith PetscErrorCode ierr; 13078965ea79SLois Curfman McInnes 13083a40ed3dSBarry Smith PetscFunctionBegin; 13098965ea79SLois Curfman McInnes *newmat = 0; 1310f69a0ea3SMatthew Knepley ierr = MatCreate(A->comm,&mat);CHKERRQ(ierr); 1311899cda47SBarry Smith ierr = MatSetSizes(mat,A->rmap.n,A->cmap.n,A->rmap.N,A->cmap.N);CHKERRQ(ierr); 1312be5d1d56SKris Buschelman ierr = MatSetType(mat,A->type_name);CHKERRQ(ierr); 1313834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 1314e04c1aa4SHong Zhang ierr = PetscMemcpy(mat->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 13153501a2bdSLois Curfman McInnes mat->factor = A->factor; 1316c456f294SBarry Smith mat->assembled = PETSC_TRUE; 1317273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 13188965ea79SLois Curfman McInnes 1319899cda47SBarry Smith mat->rmap.rstart = A->rmap.rstart; 1320899cda47SBarry Smith mat->rmap.rend = A->rmap.rend; 13218965ea79SLois Curfman McInnes a->size = oldmat->size; 13228965ea79SLois Curfman McInnes a->rank = oldmat->rank; 1323e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 1324b9b97703SBarry Smith a->nvec = oldmat->nvec; 13253782ba37SSatish Balay a->donotstash = oldmat->donotstash; 1326e04c1aa4SHong Zhang 1327899cda47SBarry Smith ierr = PetscMalloc((a->size+1)*sizeof(PetscInt),&mat->rmap.range);CHKERRQ(ierr); 1328899cda47SBarry Smith ierr = PetscMalloc((a->size+1)*sizeof(PetscInt),&mat->cmap.range);CHKERRQ(ierr); 1329899cda47SBarry Smith ierr = PetscMemcpy(mat->rmap.range,A->rmap.range,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr); 1330899cda47SBarry Smith ierr = PetscMemcpy(mat->cmap.range,A->cmap.range,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr); 13318798bf22SSatish Balay ierr = MatStashCreate_Private(A->comm,1,&mat->stash);CHKERRQ(ierr); 13328965ea79SLois Curfman McInnes 1333329f5518SBarry Smith ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 13345609ef8eSBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 133552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 13368965ea79SLois Curfman McInnes *newmat = mat; 13373a40ed3dSBarry Smith PetscFunctionReturn(0); 13388965ea79SLois Curfman McInnes } 13398965ea79SLois Curfman McInnes 1340e090d566SSatish Balay #include "petscsys.h" 13418965ea79SLois Curfman McInnes 13424a2ae208SSatish Balay #undef __FUNCT__ 13434a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIDense_DenseInFile" 1344f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPIDense_DenseInFile(MPI_Comm comm,PetscInt fd,PetscInt M,PetscInt N, MatType type,Mat *newmat) 134590ace30eSBarry Smith { 13466849ba73SBarry Smith PetscErrorCode ierr; 134732dcc486SBarry Smith PetscMPIInt rank,size; 134813f74950SBarry Smith PetscInt *rowners,i,m,nz,j; 134987828ca2SBarry Smith PetscScalar *array,*vals,*vals_ptr; 135090ace30eSBarry Smith MPI_Status status; 135190ace30eSBarry Smith 13523a40ed3dSBarry Smith PetscFunctionBegin; 1353d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 1354d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 135590ace30eSBarry Smith 135690ace30eSBarry Smith /* determine ownership of all rows */ 135790ace30eSBarry Smith m = M/size + ((M % size) > rank); 135813f74950SBarry Smith ierr = PetscMalloc((size+2)*sizeof(PetscInt),&rowners);CHKERRQ(ierr); 135913f74950SBarry Smith ierr = MPI_Allgather(&m,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr); 136090ace30eSBarry Smith rowners[0] = 0; 136190ace30eSBarry Smith for (i=2; i<=size; i++) { 136290ace30eSBarry Smith rowners[i] += rowners[i-1]; 136390ace30eSBarry Smith } 136490ace30eSBarry Smith 1365f69a0ea3SMatthew Knepley ierr = MatCreate(comm,newmat);CHKERRQ(ierr); 1366f69a0ea3SMatthew Knepley ierr = MatSetSizes(*newmat,m,PETSC_DECIDE,M,N);CHKERRQ(ierr); 1367be5d1d56SKris Buschelman ierr = MatSetType(*newmat,type);CHKERRQ(ierr); 1368878740d9SKris Buschelman ierr = MatMPIDenseSetPreallocation(*newmat,PETSC_NULL);CHKERRQ(ierr); 136990ace30eSBarry Smith ierr = MatGetArray(*newmat,&array);CHKERRQ(ierr); 137090ace30eSBarry Smith 137190ace30eSBarry Smith if (!rank) { 137287828ca2SBarry Smith ierr = PetscMalloc(m*N*sizeof(PetscScalar),&vals);CHKERRQ(ierr); 137390ace30eSBarry Smith 137490ace30eSBarry Smith /* read in my part of the matrix numerical values */ 13750752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,m*N,PETSC_SCALAR);CHKERRQ(ierr); 137690ace30eSBarry Smith 137790ace30eSBarry Smith /* insert into matrix-by row (this is why cannot directly read into array */ 137890ace30eSBarry Smith vals_ptr = vals; 137990ace30eSBarry Smith for (i=0; i<m; i++) { 138090ace30eSBarry Smith for (j=0; j<N; j++) { 138190ace30eSBarry Smith array[i + j*m] = *vals_ptr++; 138290ace30eSBarry Smith } 138390ace30eSBarry Smith } 138490ace30eSBarry Smith 138590ace30eSBarry Smith /* read in other processors and ship out */ 138690ace30eSBarry Smith for (i=1; i<size; i++) { 138790ace30eSBarry Smith nz = (rowners[i+1] - rowners[i])*N; 13880752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 1389ca161407SBarry Smith ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,(*newmat)->tag,comm);CHKERRQ(ierr); 139090ace30eSBarry Smith } 13913a40ed3dSBarry Smith } else { 139290ace30eSBarry Smith /* receive numeric values */ 139387828ca2SBarry Smith ierr = PetscMalloc(m*N*sizeof(PetscScalar),&vals);CHKERRQ(ierr); 139490ace30eSBarry Smith 139590ace30eSBarry Smith /* receive message of values*/ 1396ca161407SBarry Smith ierr = MPI_Recv(vals,m*N,MPIU_SCALAR,0,(*newmat)->tag,comm,&status);CHKERRQ(ierr); 139790ace30eSBarry Smith 139890ace30eSBarry Smith /* insert into matrix-by row (this is why cannot directly read into array */ 139990ace30eSBarry Smith vals_ptr = vals; 140090ace30eSBarry Smith for (i=0; i<m; i++) { 140190ace30eSBarry Smith for (j=0; j<N; j++) { 140290ace30eSBarry Smith array[i + j*m] = *vals_ptr++; 140390ace30eSBarry Smith } 140490ace30eSBarry Smith } 140590ace30eSBarry Smith } 1406606d414cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 1407606d414cSSatish Balay ierr = PetscFree(vals);CHKERRQ(ierr); 14086d4a8577SBarry Smith ierr = MatAssemblyBegin(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 14096d4a8577SBarry Smith ierr = MatAssemblyEnd(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 14103a40ed3dSBarry Smith PetscFunctionReturn(0); 141190ace30eSBarry Smith } 141290ace30eSBarry Smith 14134a2ae208SSatish Balay #undef __FUNCT__ 14144a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIDense" 1415f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPIDense(PetscViewer viewer, MatType type,Mat *newmat) 14168965ea79SLois Curfman McInnes { 14178965ea79SLois Curfman McInnes Mat A; 141887828ca2SBarry Smith PetscScalar *vals,*svals; 141919bcc07fSBarry Smith MPI_Comm comm = ((PetscObject)viewer)->comm; 14208965ea79SLois Curfman McInnes MPI_Status status; 142113f74950SBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*rowners,*sndcounts,m,maxnz; 142213f74950SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,*cols; 142313f74950SBarry Smith PetscInt *ourlens,*procsnz = 0,*offlens,jj,*mycols,*smycols; 142413f74950SBarry Smith PetscInt i,nz,j,rstart,rend; 142513f74950SBarry Smith int fd; 14266849ba73SBarry Smith PetscErrorCode ierr; 14278965ea79SLois Curfman McInnes 14283a40ed3dSBarry Smith PetscFunctionBegin; 1429d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1430d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 14318965ea79SLois Curfman McInnes if (!rank) { 1432b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 14330752156aSBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 1434552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 14358965ea79SLois Curfman McInnes } 14368965ea79SLois Curfman McInnes 143713f74950SBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 143890ace30eSBarry Smith M = header[1]; N = header[2]; nz = header[3]; 143990ace30eSBarry Smith 144090ace30eSBarry Smith /* 144190ace30eSBarry Smith Handle case where matrix is stored on disk as a dense matrix 144290ace30eSBarry Smith */ 144390ace30eSBarry Smith if (nz == MATRIX_BINARY_FORMAT_DENSE) { 1444be5d1d56SKris Buschelman ierr = MatLoad_MPIDense_DenseInFile(comm,fd,M,N,type,newmat);CHKERRQ(ierr); 14453a40ed3dSBarry Smith PetscFunctionReturn(0); 144690ace30eSBarry Smith } 144790ace30eSBarry Smith 14488965ea79SLois Curfman McInnes /* determine ownership of all rows */ 14498965ea79SLois Curfman McInnes m = M/size + ((M % size) > rank); 145013f74950SBarry Smith ierr = PetscMalloc((size+2)*sizeof(PetscInt),&rowners);CHKERRQ(ierr); 1451ca161407SBarry Smith ierr = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 14528965ea79SLois Curfman McInnes rowners[0] = 0; 14538965ea79SLois Curfman McInnes for (i=2; i<=size; i++) { 14548965ea79SLois Curfman McInnes rowners[i] += rowners[i-1]; 14558965ea79SLois Curfman McInnes } 14568965ea79SLois Curfman McInnes rstart = rowners[rank]; 14578965ea79SLois Curfman McInnes rend = rowners[rank+1]; 14588965ea79SLois Curfman McInnes 14598965ea79SLois Curfman McInnes /* distribute row lengths to all processors */ 146013f74950SBarry Smith ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&ourlens);CHKERRQ(ierr); 14618965ea79SLois Curfman McInnes offlens = ourlens + (rend-rstart); 14628965ea79SLois Curfman McInnes if (!rank) { 146313f74950SBarry Smith ierr = PetscMalloc(M*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 14640752156aSBarry Smith ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 146513f74950SBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 14668965ea79SLois Curfman McInnes for (i=0; i<size; i++) sndcounts[i] = rowners[i+1] - rowners[i]; 14671466f1e1SBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr); 1468606d414cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 1469ca161407SBarry Smith } else { 14701466f1e1SBarry Smith ierr = MPI_Scatterv(0,0,0,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr); 14718965ea79SLois Curfman McInnes } 14728965ea79SLois Curfman McInnes 14738965ea79SLois Curfman McInnes if (!rank) { 14748965ea79SLois Curfman McInnes /* calculate the number of nonzeros on each processor */ 147513f74950SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 147613f74950SBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 14778965ea79SLois Curfman McInnes for (i=0; i<size; i++) { 14788965ea79SLois Curfman McInnes for (j=rowners[i]; j< rowners[i+1]; j++) { 14798965ea79SLois Curfman McInnes procsnz[i] += rowlengths[j]; 14808965ea79SLois Curfman McInnes } 14818965ea79SLois Curfman McInnes } 1482606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 14838965ea79SLois Curfman McInnes 14848965ea79SLois Curfman McInnes /* determine max buffer needed and allocate it */ 14858965ea79SLois Curfman McInnes maxnz = 0; 14868965ea79SLois Curfman McInnes for (i=0; i<size; i++) { 14870452661fSBarry Smith maxnz = PetscMax(maxnz,procsnz[i]); 14888965ea79SLois Curfman McInnes } 148913f74950SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 14908965ea79SLois Curfman McInnes 14918965ea79SLois Curfman McInnes /* read in my part of the matrix column indices */ 14928965ea79SLois Curfman McInnes nz = procsnz[0]; 149313f74950SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&mycols);CHKERRQ(ierr); 14940752156aSBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 14958965ea79SLois Curfman McInnes 14968965ea79SLois Curfman McInnes /* read in every one elses and ship off */ 14978965ea79SLois Curfman McInnes for (i=1; i<size; i++) { 14988965ea79SLois Curfman McInnes nz = procsnz[i]; 14990752156aSBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 150013f74950SBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 15018965ea79SLois Curfman McInnes } 1502606d414cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 15033a40ed3dSBarry Smith } else { 15048965ea79SLois Curfman McInnes /* determine buffer space needed for message */ 15058965ea79SLois Curfman McInnes nz = 0; 15068965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 15078965ea79SLois Curfman McInnes nz += ourlens[i]; 15088965ea79SLois Curfman McInnes } 150913f74950SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&mycols);CHKERRQ(ierr); 15108965ea79SLois Curfman McInnes 15118965ea79SLois Curfman McInnes /* receive message of column indices*/ 151213f74950SBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 151313f74950SBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 151429bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 15158965ea79SLois Curfman McInnes } 15168965ea79SLois Curfman McInnes 15178965ea79SLois Curfman McInnes /* loop over local rows, determining number of off diagonal entries */ 151813f74950SBarry Smith ierr = PetscMemzero(offlens,m*sizeof(PetscInt));CHKERRQ(ierr); 15198965ea79SLois Curfman McInnes jj = 0; 15208965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 15218965ea79SLois Curfman McInnes for (j=0; j<ourlens[i]; j++) { 15228965ea79SLois Curfman McInnes if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++; 15238965ea79SLois Curfman McInnes jj++; 15248965ea79SLois Curfman McInnes } 15258965ea79SLois Curfman McInnes } 15268965ea79SLois Curfman McInnes 15278965ea79SLois Curfman McInnes /* create our matrix */ 15288965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 15298965ea79SLois Curfman McInnes ourlens[i] -= offlens[i]; 15308965ea79SLois Curfman McInnes } 1531f69a0ea3SMatthew Knepley ierr = MatCreate(comm,newmat);CHKERRQ(ierr); 1532f69a0ea3SMatthew Knepley ierr = MatSetSizes(*newmat,m,PETSC_DECIDE,M,N);CHKERRQ(ierr); 1533be5d1d56SKris Buschelman ierr = MatSetType(*newmat,type);CHKERRQ(ierr); 1534878740d9SKris Buschelman ierr = MatMPIDenseSetPreallocation(*newmat,PETSC_NULL);CHKERRQ(ierr); 15358965ea79SLois Curfman McInnes A = *newmat; 15368965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 15378965ea79SLois Curfman McInnes ourlens[i] += offlens[i]; 15388965ea79SLois Curfman McInnes } 15398965ea79SLois Curfman McInnes 15408965ea79SLois Curfman McInnes if (!rank) { 154187828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&vals);CHKERRQ(ierr); 15428965ea79SLois Curfman McInnes 15438965ea79SLois Curfman McInnes /* read in my part of the matrix numerical values */ 15448965ea79SLois Curfman McInnes nz = procsnz[0]; 15450752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 15468965ea79SLois Curfman McInnes 15478965ea79SLois Curfman McInnes /* insert into matrix */ 15488965ea79SLois Curfman McInnes jj = rstart; 15498965ea79SLois Curfman McInnes smycols = mycols; 15508965ea79SLois Curfman McInnes svals = vals; 15518965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 15528965ea79SLois Curfman McInnes ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 15538965ea79SLois Curfman McInnes smycols += ourlens[i]; 15548965ea79SLois Curfman McInnes svals += ourlens[i]; 15558965ea79SLois Curfman McInnes jj++; 15568965ea79SLois Curfman McInnes } 15578965ea79SLois Curfman McInnes 15588965ea79SLois Curfman McInnes /* read in other processors and ship out */ 15598965ea79SLois Curfman McInnes for (i=1; i<size; i++) { 15608965ea79SLois Curfman McInnes nz = procsnz[i]; 15610752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 1562ca161407SBarry Smith ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 15638965ea79SLois Curfman McInnes } 1564606d414cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 15653a40ed3dSBarry Smith } else { 15668965ea79SLois Curfman McInnes /* receive numeric values */ 156784d528b1SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&vals);CHKERRQ(ierr); 15688965ea79SLois Curfman McInnes 15698965ea79SLois Curfman McInnes /* receive message of values*/ 1570ca161407SBarry Smith ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 1571ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 157229bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 15738965ea79SLois Curfman McInnes 15748965ea79SLois Curfman McInnes /* insert into matrix */ 15758965ea79SLois Curfman McInnes jj = rstart; 15768965ea79SLois Curfman McInnes smycols = mycols; 15778965ea79SLois Curfman McInnes svals = vals; 15788965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 15798965ea79SLois Curfman McInnes ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 15808965ea79SLois Curfman McInnes smycols += ourlens[i]; 15818965ea79SLois Curfman McInnes svals += ourlens[i]; 15828965ea79SLois Curfman McInnes jj++; 15838965ea79SLois Curfman McInnes } 15848965ea79SLois Curfman McInnes } 1585606d414cSSatish Balay ierr = PetscFree(ourlens);CHKERRQ(ierr); 1586606d414cSSatish Balay ierr = PetscFree(vals);CHKERRQ(ierr); 1587606d414cSSatish Balay ierr = PetscFree(mycols);CHKERRQ(ierr); 1588606d414cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 15898965ea79SLois Curfman McInnes 15906d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15916d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15923a40ed3dSBarry Smith PetscFunctionReturn(0); 15938965ea79SLois Curfman McInnes } 159490ace30eSBarry Smith 15956e4ee0c6SHong Zhang #undef __FUNCT__ 15966e4ee0c6SHong Zhang #define __FUNCT__ "MatEqual_MPIDense" 15976e4ee0c6SHong Zhang PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscTruth *flag) 15986e4ee0c6SHong Zhang { 15996e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 16006e4ee0c6SHong Zhang Mat a,b; 16016e4ee0c6SHong Zhang PetscTruth flg; 16026e4ee0c6SHong Zhang PetscErrorCode ierr; 160390ace30eSBarry Smith 16046e4ee0c6SHong Zhang PetscFunctionBegin; 16056e4ee0c6SHong Zhang a = matA->A; 16066e4ee0c6SHong Zhang b = matB->A; 16076e4ee0c6SHong Zhang ierr = MatEqual(a,b,&flg);CHKERRQ(ierr); 16086e4ee0c6SHong Zhang PetscFunctionReturn(0); 16096e4ee0c6SHong Zhang } 161090ace30eSBarry Smith 161190ace30eSBarry Smith 161290ace30eSBarry Smith 1613