xref: /petsc/src/mat/impls/dense/mpi/mpidense.c (revision 2e3566b088c8dad3fdfa32dec61db2e7bf91c868)
1be1d678aSKris Buschelman 
2ed3cc1f0SBarry Smith /*
3ed3cc1f0SBarry Smith    Basic functions for basic parallel dense matrices.
4ed3cc1f0SBarry Smith */
5ed3cc1f0SBarry Smith 
604fea9ffSBarry Smith 
7c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h>    /*I   "petscmat.h"  I*/
88949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h>
98965ea79SLois Curfman McInnes 
10ba8c8a56SBarry Smith #undef __FUNCT__
11ab92ecdeSBarry Smith #define __FUNCT__ "MatDenseGetLocalMatrix"
12ab92ecdeSBarry Smith /*@
13ab92ecdeSBarry Smith 
14ab92ecdeSBarry Smith       MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential
15ab92ecdeSBarry Smith               matrix that represents the operator. For sequential matrices it returns itself.
16ab92ecdeSBarry Smith 
17ab92ecdeSBarry Smith     Input Parameter:
18ab92ecdeSBarry Smith .      A - the Seq or MPI dense matrix
19ab92ecdeSBarry Smith 
20ab92ecdeSBarry Smith     Output Parameter:
21ab92ecdeSBarry Smith .      B - the inner matrix
22ab92ecdeSBarry Smith 
238e6c10adSSatish Balay     Level: intermediate
248e6c10adSSatish Balay 
25ab92ecdeSBarry Smith @*/
26ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B)
27ab92ecdeSBarry Smith {
28ab92ecdeSBarry Smith   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
29ab92ecdeSBarry Smith   PetscErrorCode ierr;
30ace3abfcSBarry Smith   PetscBool      flg;
31ab92ecdeSBarry Smith 
32ab92ecdeSBarry Smith   PetscFunctionBegin;
33251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr);
342205254eSKarl Rupp   if (flg) *B = mat->A;
352205254eSKarl Rupp   else *B = A;
36ab92ecdeSBarry Smith   PetscFunctionReturn(0);
37ab92ecdeSBarry Smith }
38ab92ecdeSBarry Smith 
39ab92ecdeSBarry Smith #undef __FUNCT__
40ba8c8a56SBarry Smith #define __FUNCT__ "MatGetRow_MPIDense"
41ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
42ba8c8a56SBarry Smith {
43ba8c8a56SBarry Smith   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
44ba8c8a56SBarry Smith   PetscErrorCode ierr;
45d0f46423SBarry Smith   PetscInt       lrow,rstart = A->rmap->rstart,rend = A->rmap->rend;
46ba8c8a56SBarry Smith 
47ba8c8a56SBarry Smith   PetscFunctionBegin;
48e7e72b3dSBarry Smith   if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows");
49ba8c8a56SBarry Smith   lrow = row - rstart;
50ba8c8a56SBarry Smith   ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr);
51ba8c8a56SBarry Smith   PetscFunctionReturn(0);
52ba8c8a56SBarry Smith }
53ba8c8a56SBarry Smith 
54ba8c8a56SBarry Smith #undef __FUNCT__
55ba8c8a56SBarry Smith #define __FUNCT__ "MatRestoreRow_MPIDense"
56ba8c8a56SBarry Smith PetscErrorCode MatRestoreRow_MPIDense(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
57ba8c8a56SBarry Smith {
58ba8c8a56SBarry Smith   PetscErrorCode ierr;
59ba8c8a56SBarry Smith 
60ba8c8a56SBarry Smith   PetscFunctionBegin;
61ba8c8a56SBarry Smith   if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);}
62ba8c8a56SBarry Smith   if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);}
63ba8c8a56SBarry Smith   PetscFunctionReturn(0);
64ba8c8a56SBarry Smith }
65ba8c8a56SBarry Smith 
664a2ae208SSatish Balay #undef __FUNCT__
674a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIDense"
6811bd1e4dSLisandro Dalcin PetscErrorCode  MatGetDiagonalBlock_MPIDense(Mat A,Mat *a)
690de54da6SSatish Balay {
700de54da6SSatish Balay   Mat_MPIDense   *mdn = (Mat_MPIDense*)A->data;
716849ba73SBarry Smith   PetscErrorCode ierr;
72d0f46423SBarry Smith   PetscInt       m = A->rmap->n,rstart = A->rmap->rstart;
7387828ca2SBarry Smith   PetscScalar    *array;
740de54da6SSatish Balay   MPI_Comm       comm;
7511bd1e4dSLisandro Dalcin   Mat            B;
760de54da6SSatish Balay 
770de54da6SSatish Balay   PetscFunctionBegin;
78e32f2f54SBarry Smith   if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported.");
790de54da6SSatish Balay 
8011bd1e4dSLisandro Dalcin   ierr = PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B);CHKERRQ(ierr);
8111bd1e4dSLisandro Dalcin   if (!B) {
820de54da6SSatish Balay     ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr);
8311bd1e4dSLisandro Dalcin     ierr = MatCreate(comm,&B);CHKERRQ(ierr);
8411bd1e4dSLisandro Dalcin     ierr = MatSetSizes(B,m,m,m,m);CHKERRQ(ierr);
8511bd1e4dSLisandro Dalcin     ierr = MatSetType(B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr);
868c778c55SBarry Smith     ierr = MatDenseGetArray(mdn->A,&array);CHKERRQ(ierr);
8711bd1e4dSLisandro Dalcin     ierr = MatSeqDenseSetPreallocation(B,array+m*rstart);CHKERRQ(ierr);
888c778c55SBarry Smith     ierr = MatDenseRestoreArray(mdn->A,&array);CHKERRQ(ierr);
8911bd1e4dSLisandro Dalcin     ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
9011bd1e4dSLisandro Dalcin     ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
9111bd1e4dSLisandro Dalcin     ierr = PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B);CHKERRQ(ierr);
9211bd1e4dSLisandro Dalcin     *a   = B;
9311bd1e4dSLisandro Dalcin     ierr = MatDestroy(&B);CHKERRQ(ierr);
942205254eSKarl Rupp   } else *a = B;
950de54da6SSatish Balay   PetscFunctionReturn(0);
960de54da6SSatish Balay }
970de54da6SSatish Balay 
984a2ae208SSatish Balay #undef __FUNCT__
994a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIDense"
10013f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv)
1018965ea79SLois Curfman McInnes {
10239b7565bSBarry Smith   Mat_MPIDense   *A = (Mat_MPIDense*)mat->data;
103dfbe8321SBarry Smith   PetscErrorCode ierr;
104d0f46423SBarry Smith   PetscInt       i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row;
105ace3abfcSBarry Smith   PetscBool      roworiented = A->roworiented;
1068965ea79SLois Curfman McInnes 
1073a40ed3dSBarry Smith   PetscFunctionBegin;
1088965ea79SLois Curfman McInnes   for (i=0; i<m; i++) {
1095ef9f2a5SBarry Smith     if (idxm[i] < 0) continue;
110e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
1118965ea79SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
1128965ea79SLois Curfman McInnes       row = idxm[i] - rstart;
11339b7565bSBarry Smith       if (roworiented) {
11439b7565bSBarry Smith         ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr);
1153a40ed3dSBarry Smith       } else {
1168965ea79SLois Curfman McInnes         for (j=0; j<n; j++) {
1175ef9f2a5SBarry Smith           if (idxn[j] < 0) continue;
118e32f2f54SBarry Smith           if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
11939b7565bSBarry Smith           ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr);
12039b7565bSBarry Smith         }
1218965ea79SLois Curfman McInnes       }
1222205254eSKarl Rupp     } else if (!A->donotstash) {
1235080c13bSMatthew G Knepley       mat->assembled = PETSC_FALSE;
12439b7565bSBarry Smith       if (roworiented) {
125b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE);CHKERRQ(ierr);
126d36fbae8SSatish Balay       } else {
127b400d20cSBarry Smith         ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE);CHKERRQ(ierr);
12839b7565bSBarry Smith       }
129b49de8d1SLois Curfman McInnes     }
130b49de8d1SLois Curfman McInnes   }
1313a40ed3dSBarry Smith   PetscFunctionReturn(0);
132b49de8d1SLois Curfman McInnes }
133b49de8d1SLois Curfman McInnes 
1344a2ae208SSatish Balay #undef __FUNCT__
1354a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIDense"
13613f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
137b49de8d1SLois Curfman McInnes {
138b49de8d1SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
139dfbe8321SBarry Smith   PetscErrorCode ierr;
140d0f46423SBarry Smith   PetscInt       i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row;
141b49de8d1SLois Curfman McInnes 
1423a40ed3dSBarry Smith   PetscFunctionBegin;
143b49de8d1SLois Curfman McInnes   for (i=0; i<m; i++) {
144e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */
145e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
146b49de8d1SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
147b49de8d1SLois Curfman McInnes       row = idxm[i] - rstart;
148b49de8d1SLois Curfman McInnes       for (j=0; j<n; j++) {
149e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */
150e7e72b3dSBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
151b49de8d1SLois Curfman McInnes         ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr);
152b49de8d1SLois Curfman McInnes       }
153e7e72b3dSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
1548965ea79SLois Curfman McInnes   }
1553a40ed3dSBarry Smith   PetscFunctionReturn(0);
1568965ea79SLois Curfman McInnes }
1578965ea79SLois Curfman McInnes 
1584a2ae208SSatish Balay #undef __FUNCT__
1598c778c55SBarry Smith #define __FUNCT__ "MatDenseGetArray_MPIDense"
1608c778c55SBarry Smith PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar *array[])
161ff14e315SSatish Balay {
162ff14e315SSatish Balay   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
163dfbe8321SBarry Smith   PetscErrorCode ierr;
164ff14e315SSatish Balay 
1653a40ed3dSBarry Smith   PetscFunctionBegin;
1668c778c55SBarry Smith   ierr = MatDenseGetArray(a->A,array);CHKERRQ(ierr);
1673a40ed3dSBarry Smith   PetscFunctionReturn(0);
168ff14e315SSatish Balay }
169ff14e315SSatish Balay 
1704a2ae208SSatish Balay #undef __FUNCT__
1714a2ae208SSatish Balay #define __FUNCT__ "MatGetSubMatrix_MPIDense"
1724aa3045dSJed Brown static PetscErrorCode MatGetSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B)
173ca3fa75bSLois Curfman McInnes {
174ca3fa75bSLois Curfman McInnes   Mat_MPIDense   *mat  = (Mat_MPIDense*)A->data,*newmatd;
175ca3fa75bSLois Curfman McInnes   Mat_SeqDense   *lmat = (Mat_SeqDense*)mat->A->data;
1766849ba73SBarry Smith   PetscErrorCode ierr;
1774aa3045dSJed Brown   PetscInt       i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols;
1785d0c19d7SBarry Smith   const PetscInt *irow,*icol;
17987828ca2SBarry Smith   PetscScalar    *av,*bv,*v = lmat->v;
180ca3fa75bSLois Curfman McInnes   Mat            newmat;
1814aa3045dSJed Brown   IS             iscol_local;
182ca3fa75bSLois Curfman McInnes 
183ca3fa75bSLois Curfman McInnes   PetscFunctionBegin;
1844aa3045dSJed Brown   ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
185ca3fa75bSLois Curfman McInnes   ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr);
1864aa3045dSJed Brown   ierr = ISGetIndices(iscol_local,&icol);CHKERRQ(ierr);
187b9b97703SBarry Smith   ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr);
188b9b97703SBarry Smith   ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr);
1894aa3045dSJed Brown   ierr = ISGetSize(iscol,&Ncols);CHKERRQ(ierr); /* global number of columns, size of iscol_local */
190ca3fa75bSLois Curfman McInnes 
191ca3fa75bSLois Curfman McInnes   /* No parallel redistribution currently supported! Should really check each index set
1927eba5e9cSLois Curfman McInnes      to comfirm that it is OK.  ... Currently supports only submatrix same partitioning as
1937eba5e9cSLois Curfman McInnes      original matrix! */
194ca3fa75bSLois Curfman McInnes 
195ca3fa75bSLois Curfman McInnes   ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr);
1967eba5e9cSLois Curfman McInnes   ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr);
197ca3fa75bSLois Curfman McInnes 
198ca3fa75bSLois Curfman McInnes   /* Check submatrix call */
199ca3fa75bSLois Curfman McInnes   if (scall == MAT_REUSE_MATRIX) {
200e32f2f54SBarry Smith     /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */
2017eba5e9cSLois Curfman McInnes     /* Really need to test rows and column sizes! */
202ca3fa75bSLois Curfman McInnes     newmat = *B;
203ca3fa75bSLois Curfman McInnes   } else {
204ca3fa75bSLois Curfman McInnes     /* Create and fill new matrix */
205ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr);
2064aa3045dSJed Brown     ierr = MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols);CHKERRQ(ierr);
2077adad957SLisandro Dalcin     ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr);
2080298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr);
209ca3fa75bSLois Curfman McInnes   }
210ca3fa75bSLois Curfman McInnes 
211ca3fa75bSLois Curfman McInnes   /* Now extract the data pointers and do the copy, column at a time */
212ca3fa75bSLois Curfman McInnes   newmatd = (Mat_MPIDense*)newmat->data;
213ca3fa75bSLois Curfman McInnes   bv      = ((Mat_SeqDense*)newmatd->A->data)->v;
214ca3fa75bSLois Curfman McInnes 
2154aa3045dSJed Brown   for (i=0; i<Ncols; i++) {
21625a33276SHong Zhang     av = v + ((Mat_SeqDense*)mat->A->data)->lda*icol[i];
217ca3fa75bSLois Curfman McInnes     for (j=0; j<nrows; j++) {
2187eba5e9cSLois Curfman McInnes       *bv++ = av[irow[j] - rstart];
219ca3fa75bSLois Curfman McInnes     }
220ca3fa75bSLois Curfman McInnes   }
221ca3fa75bSLois Curfman McInnes 
222ca3fa75bSLois Curfman McInnes   /* Assemble the matrices so that the correct flags are set */
223ca3fa75bSLois Curfman McInnes   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
224ca3fa75bSLois Curfman McInnes   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
225ca3fa75bSLois Curfman McInnes 
226ca3fa75bSLois Curfman McInnes   /* Free work space */
227ca3fa75bSLois Curfman McInnes   ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr);
2285bdf786aSShri Abhyankar   ierr = ISRestoreIndices(iscol_local,&icol);CHKERRQ(ierr);
22932bb1f2dSLisandro Dalcin   ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
230ca3fa75bSLois Curfman McInnes   *B   = newmat;
231ca3fa75bSLois Curfman McInnes   PetscFunctionReturn(0);
232ca3fa75bSLois Curfman McInnes }
233ca3fa75bSLois Curfman McInnes 
2344a2ae208SSatish Balay #undef __FUNCT__
2358c778c55SBarry Smith #define __FUNCT__ "MatDenseRestoreArray_MPIDense"
2368c778c55SBarry Smith PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar *array[])
237ff14e315SSatish Balay {
23873a71a0fSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
23973a71a0fSBarry Smith   PetscErrorCode ierr;
24073a71a0fSBarry Smith 
2413a40ed3dSBarry Smith   PetscFunctionBegin;
2428c778c55SBarry Smith   ierr = MatDenseRestoreArray(a->A,array);CHKERRQ(ierr);
2433a40ed3dSBarry Smith   PetscFunctionReturn(0);
244ff14e315SSatish Balay }
245ff14e315SSatish Balay 
2464a2ae208SSatish Balay #undef __FUNCT__
2474a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIDense"
248dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode)
2498965ea79SLois Curfman McInnes {
25039ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
251ce94432eSBarry Smith   MPI_Comm       comm;
252dfbe8321SBarry Smith   PetscErrorCode ierr;
25313f74950SBarry Smith   PetscInt       nstash,reallocs;
2548965ea79SLois Curfman McInnes   InsertMode     addv;
2558965ea79SLois Curfman McInnes 
2563a40ed3dSBarry Smith   PetscFunctionBegin;
257ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr);
2588965ea79SLois Curfman McInnes   /* make sure all processors are either in INSERTMODE or ADDMODE */
259c3aae356SJed Brown   ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,comm);CHKERRQ(ierr);
260ce94432eSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Cannot mix adds/inserts on different procs");
261e0fa3b82SLois Curfman McInnes   mat->insertmode = addv; /* in case this processor had no cache */
2628965ea79SLois Curfman McInnes 
263d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
2648798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
265ae15b995SBarry Smith   ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
2663a40ed3dSBarry Smith   PetscFunctionReturn(0);
2678965ea79SLois Curfman McInnes }
2688965ea79SLois Curfman McInnes 
2694a2ae208SSatish Balay #undef __FUNCT__
2704a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIDense"
271dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode)
2728965ea79SLois Curfman McInnes {
27339ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn=(Mat_MPIDense*)mat->data;
2746849ba73SBarry Smith   PetscErrorCode ierr;
27513f74950SBarry Smith   PetscInt       i,*row,*col,flg,j,rstart,ncols;
27613f74950SBarry Smith   PetscMPIInt    n;
27787828ca2SBarry Smith   PetscScalar    *val;
278e0fa3b82SLois Curfman McInnes   InsertMode     addv=mat->insertmode;
2798965ea79SLois Curfman McInnes 
2803a40ed3dSBarry Smith   PetscFunctionBegin;
2818965ea79SLois Curfman McInnes   /*  wait on receives */
2827ef1d9bdSSatish Balay   while (1) {
2838798bf22SSatish Balay     ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
2847ef1d9bdSSatish Balay     if (!flg) break;
2858965ea79SLois Curfman McInnes 
2867ef1d9bdSSatish Balay     for (i=0; i<n;) {
2877ef1d9bdSSatish Balay       /* Now identify the consecutive vals belonging to the same row */
2882205254eSKarl Rupp       for (j=i,rstart=row[j]; j<n; j++) {
2892205254eSKarl Rupp         if (row[j] != rstart) break;
2902205254eSKarl Rupp       }
2917ef1d9bdSSatish Balay       if (j < n) ncols = j-i;
2927ef1d9bdSSatish Balay       else       ncols = n-i;
2937ef1d9bdSSatish Balay       /* Now assemble all these values with a single function call */
2947ef1d9bdSSatish Balay       ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
2957ef1d9bdSSatish Balay       i    = j;
2968965ea79SLois Curfman McInnes     }
2977ef1d9bdSSatish Balay   }
2988798bf22SSatish Balay   ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
2998965ea79SLois Curfman McInnes 
30039ddd567SLois Curfman McInnes   ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr);
30139ddd567SLois Curfman McInnes   ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr);
3028965ea79SLois Curfman McInnes 
3036d4a8577SBarry Smith   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
30439ddd567SLois Curfman McInnes     ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr);
3058965ea79SLois Curfman McInnes   }
3063a40ed3dSBarry Smith   PetscFunctionReturn(0);
3078965ea79SLois Curfman McInnes }
3088965ea79SLois Curfman McInnes 
3094a2ae208SSatish Balay #undef __FUNCT__
3104a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIDense"
311dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A)
3128965ea79SLois Curfman McInnes {
313dfbe8321SBarry Smith   PetscErrorCode ierr;
31439ddd567SLois Curfman McInnes   Mat_MPIDense   *l = (Mat_MPIDense*)A->data;
3153a40ed3dSBarry Smith 
3163a40ed3dSBarry Smith   PetscFunctionBegin;
3173a40ed3dSBarry Smith   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
3183a40ed3dSBarry Smith   PetscFunctionReturn(0);
3198965ea79SLois Curfman McInnes }
3208965ea79SLois Curfman McInnes 
3218965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the
3228965ea79SLois Curfman McInnes    matrix is square and the column and row owerships are identical.
3238965ea79SLois Curfman McInnes    This is a BUG. The only way to fix it seems to be to access
3243501a2bdSLois Curfman McInnes    mdn->A and mdn->B directly and not through the MatZeroRows()
3258965ea79SLois Curfman McInnes    routine.
3268965ea79SLois Curfman McInnes */
3274a2ae208SSatish Balay #undef __FUNCT__
3284a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIDense"
3292b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
3308965ea79SLois Curfman McInnes {
33139ddd567SLois Curfman McInnes   Mat_MPIDense      *l = (Mat_MPIDense*)A->data;
3326849ba73SBarry Smith   PetscErrorCode    ierr;
333d0f46423SBarry Smith   PetscInt          i,*owners = A->rmap->range;
33476ec1555SBarry Smith   PetscInt          *sizes,j,idx,nsends;
33513f74950SBarry Smith   PetscInt          nmax,*svalues,*starts,*owner,nrecvs;
3367adad957SLisandro Dalcin   PetscInt          *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source;
33713f74950SBarry Smith   PetscInt          *lens,*lrows,*values;
33813f74950SBarry Smith   PetscMPIInt       n,imdex,rank = l->rank,size = l->size;
339ce94432eSBarry Smith   MPI_Comm          comm;
3408965ea79SLois Curfman McInnes   MPI_Request       *send_waits,*recv_waits;
3418965ea79SLois Curfman McInnes   MPI_Status        recv_status,*send_status;
342ace3abfcSBarry Smith   PetscBool         found;
34397b48c8fSBarry Smith   const PetscScalar *xx;
34497b48c8fSBarry Smith   PetscScalar       *bb;
3458965ea79SLois Curfman McInnes 
3463a40ed3dSBarry Smith   PetscFunctionBegin;
347ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
348ce94432eSBarry Smith   if (A->rmap->N != A->cmap->N) SETERRQ(comm,PETSC_ERR_SUP,"Only handles square matrices");
349b9679d65SBarry Smith   if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only handles matrices with identical column and row ownership");
3508965ea79SLois Curfman McInnes   /*  first count number of contributors to each processor */
351f628708eSJed Brown   ierr = PetscCalloc1(2*size,&sizes);CHKERRQ(ierr);
352037dbc42SBarry Smith   ierr = PetscMalloc1(N+1,&owner);CHKERRQ(ierr);  /* see note*/
3538965ea79SLois Curfman McInnes   for (i=0; i<N; i++) {
3548965ea79SLois Curfman McInnes     idx   = rows[i];
35535d8aa7fSBarry Smith     found = PETSC_FALSE;
3568965ea79SLois Curfman McInnes     for (j=0; j<size; j++) {
3578965ea79SLois Curfman McInnes       if (idx >= owners[j] && idx < owners[j+1]) {
35876ec1555SBarry Smith         sizes[2*j]++; sizes[2*j+1] = 1; owner[i] = j; found = PETSC_TRUE; break;
3598965ea79SLois Curfman McInnes       }
3608965ea79SLois Curfman McInnes     }
361e32f2f54SBarry Smith     if (!found) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Index out of range");
3628965ea79SLois Curfman McInnes   }
3632205254eSKarl Rupp   nsends = 0;
36476ec1555SBarry Smith   for (i=0; i<size; i++) nsends += sizes[2*i+1];
3658965ea79SLois Curfman McInnes 
3668965ea79SLois Curfman McInnes   /* inform other processors of number of messages and max length*/
36776ec1555SBarry Smith   ierr = PetscMaxSum(comm,sizes,&nmax,&nrecvs);CHKERRQ(ierr);
3688965ea79SLois Curfman McInnes 
3698965ea79SLois Curfman McInnes   /* post receives:   */
370785e854fSJed Brown   ierr = PetscMalloc1((nrecvs+1)*(nmax+1),&rvalues);CHKERRQ(ierr);
371854ce69bSBarry Smith   ierr = PetscMalloc1(nrecvs+1,&recv_waits);CHKERRQ(ierr);
3728965ea79SLois Curfman McInnes   for (i=0; i<nrecvs; i++) {
37313f74950SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
3748965ea79SLois Curfman McInnes   }
3758965ea79SLois Curfman McInnes 
3768965ea79SLois Curfman McInnes   /* do sends:
3778965ea79SLois Curfman McInnes       1) starts[i] gives the starting index in svalues for stuff going to
3788965ea79SLois Curfman McInnes          the ith processor
3798965ea79SLois Curfman McInnes   */
380854ce69bSBarry Smith   ierr = PetscMalloc1(N+1,&svalues);CHKERRQ(ierr);
381854ce69bSBarry Smith   ierr = PetscMalloc1(nsends+1,&send_waits);CHKERRQ(ierr);
382854ce69bSBarry Smith   ierr = PetscMalloc1(size+1,&starts);CHKERRQ(ierr);
3838965ea79SLois Curfman McInnes 
3848965ea79SLois Curfman McInnes   starts[0] = 0;
38576ec1555SBarry Smith   for (i=1; i<size; i++) starts[i] = starts[i-1] + sizes[2*i-2];
3862205254eSKarl Rupp   for (i=0; i<N; i++) svalues[starts[owner[i]]++] = rows[i];
3872205254eSKarl Rupp 
3882205254eSKarl Rupp   starts[0] = 0;
38976ec1555SBarry Smith   for (i=1; i<size+1; i++) starts[i] = starts[i-1] + sizes[2*i-2];
3908965ea79SLois Curfman McInnes   count = 0;
3918965ea79SLois Curfman McInnes   for (i=0; i<size; i++) {
39276ec1555SBarry Smith     if (sizes[2*i+1]) {
39376ec1555SBarry Smith       ierr = MPI_Isend(svalues+starts[i],sizes[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
3948965ea79SLois Curfman McInnes     }
3958965ea79SLois Curfman McInnes   }
396606d414cSSatish Balay   ierr = PetscFree(starts);CHKERRQ(ierr);
3978965ea79SLois Curfman McInnes 
3988965ea79SLois Curfman McInnes   base = owners[rank];
3998965ea79SLois Curfman McInnes 
4008965ea79SLois Curfman McInnes   /*  wait on receives */
401dcca6d9dSJed Brown   ierr  = PetscMalloc2(nrecvs,&lens,nrecvs,&source);CHKERRQ(ierr);
40274ed9c26SBarry Smith   count = nrecvs;
40374ed9c26SBarry Smith   slen  = 0;
4048965ea79SLois Curfman McInnes   while (count) {
405ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
4068965ea79SLois Curfman McInnes     /* unpack receives into our local space */
40713f74950SBarry Smith     ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr);
4082205254eSKarl Rupp 
4098965ea79SLois Curfman McInnes     source[imdex] = recv_status.MPI_SOURCE;
4108965ea79SLois Curfman McInnes     lens[imdex]   = n;
4118965ea79SLois Curfman McInnes     slen += n;
4128965ea79SLois Curfman McInnes     count--;
4138965ea79SLois Curfman McInnes   }
414606d414cSSatish Balay   ierr = PetscFree(recv_waits);CHKERRQ(ierr);
4158965ea79SLois Curfman McInnes 
4168965ea79SLois Curfman McInnes   /* move the data into the send scatter */
417854ce69bSBarry Smith   ierr  = PetscMalloc1(slen+1,&lrows);CHKERRQ(ierr);
4188965ea79SLois Curfman McInnes   count = 0;
4198965ea79SLois Curfman McInnes   for (i=0; i<nrecvs; i++) {
4208965ea79SLois Curfman McInnes     values = rvalues + i*nmax;
4218965ea79SLois Curfman McInnes     for (j=0; j<lens[i]; j++) {
4228965ea79SLois Curfman McInnes       lrows[count++] = values[j] - base;
4238965ea79SLois Curfman McInnes     }
4248965ea79SLois Curfman McInnes   }
425606d414cSSatish Balay   ierr = PetscFree(rvalues);CHKERRQ(ierr);
42674ed9c26SBarry Smith   ierr = PetscFree2(lens,source);CHKERRQ(ierr);
427606d414cSSatish Balay   ierr = PetscFree(owner);CHKERRQ(ierr);
42876ec1555SBarry Smith   ierr = PetscFree(sizes);CHKERRQ(ierr);
4298965ea79SLois Curfman McInnes 
43097b48c8fSBarry Smith   /* fix right hand side if needed */
43197b48c8fSBarry Smith   if (x && b) {
43297b48c8fSBarry Smith     ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr);
43397b48c8fSBarry Smith     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
43497b48c8fSBarry Smith     for (i=0; i<slen; i++) {
43597b48c8fSBarry Smith       bb[lrows[i]] = diag*xx[lrows[i]];
43697b48c8fSBarry Smith     }
43797b48c8fSBarry Smith     ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr);
43897b48c8fSBarry Smith     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
43997b48c8fSBarry Smith   }
44097b48c8fSBarry Smith 
4418965ea79SLois Curfman McInnes   /* actually zap the local rows */
442b9679d65SBarry Smith   ierr = MatZeroRows(l->A,slen,lrows,0.0,0,0);CHKERRQ(ierr);
443e2eb51b1SBarry Smith   if (diag != 0.0) {
444b9679d65SBarry Smith     Mat_SeqDense *ll = (Mat_SeqDense*)l->A->data;
445b9679d65SBarry Smith     PetscInt     m   = ll->lda, i;
446b9679d65SBarry Smith 
447b9679d65SBarry Smith     for (i=0; i<slen; i++) {
448b9679d65SBarry Smith       ll->v[lrows[i] + m*(A->cmap->rstart + lrows[i])] = diag;
449b9679d65SBarry Smith     }
450b9679d65SBarry Smith   }
451606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
4528965ea79SLois Curfman McInnes 
4538965ea79SLois Curfman McInnes   /* wait on sends */
4548965ea79SLois Curfman McInnes   if (nsends) {
455785e854fSJed Brown     ierr = PetscMalloc1(nsends,&send_status);CHKERRQ(ierr);
456ca161407SBarry Smith     ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
457606d414cSSatish Balay     ierr = PetscFree(send_status);CHKERRQ(ierr);
4588965ea79SLois Curfman McInnes   }
459606d414cSSatish Balay   ierr = PetscFree(send_waits);CHKERRQ(ierr);
460606d414cSSatish Balay   ierr = PetscFree(svalues);CHKERRQ(ierr);
4613a40ed3dSBarry Smith   PetscFunctionReturn(0);
4628965ea79SLois Curfman McInnes }
4638965ea79SLois Curfman McInnes 
4644a2ae208SSatish Balay #undef __FUNCT__
4654a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIDense"
466dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy)
4678965ea79SLois Curfman McInnes {
46839ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
469dfbe8321SBarry Smith   PetscErrorCode ierr;
470c456f294SBarry Smith 
4713a40ed3dSBarry Smith   PetscFunctionBegin;
472ca9f406cSSatish Balay   ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
473ca9f406cSSatish Balay   ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
47444cd7ae7SLois Curfman McInnes   ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy);CHKERRQ(ierr);
4753a40ed3dSBarry Smith   PetscFunctionReturn(0);
4768965ea79SLois Curfman McInnes }
4778965ea79SLois Curfman McInnes 
4784a2ae208SSatish Balay #undef __FUNCT__
4794a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIDense"
480dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz)
4818965ea79SLois Curfman McInnes {
48239ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
483dfbe8321SBarry Smith   PetscErrorCode ierr;
484c456f294SBarry Smith 
4853a40ed3dSBarry Smith   PetscFunctionBegin;
486ca9f406cSSatish Balay   ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
487ca9f406cSSatish Balay   ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
48844cd7ae7SLois Curfman McInnes   ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr);
4893a40ed3dSBarry Smith   PetscFunctionReturn(0);
4908965ea79SLois Curfman McInnes }
4918965ea79SLois Curfman McInnes 
4924a2ae208SSatish Balay #undef __FUNCT__
4934a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIDense"
494dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy)
495096963f5SLois Curfman McInnes {
496096963f5SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
497dfbe8321SBarry Smith   PetscErrorCode ierr;
49887828ca2SBarry Smith   PetscScalar    zero = 0.0;
499096963f5SLois Curfman McInnes 
5003a40ed3dSBarry Smith   PetscFunctionBegin;
5012dcb1b2aSMatthew Knepley   ierr = VecSet(yy,zero);CHKERRQ(ierr);
5027c922b88SBarry Smith   ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr);
503ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
504ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
5053a40ed3dSBarry Smith   PetscFunctionReturn(0);
506096963f5SLois Curfman McInnes }
507096963f5SLois Curfman McInnes 
5084a2ae208SSatish Balay #undef __FUNCT__
5094a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIDense"
510dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz)
511096963f5SLois Curfman McInnes {
512096963f5SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
513dfbe8321SBarry Smith   PetscErrorCode ierr;
514096963f5SLois Curfman McInnes 
5153a40ed3dSBarry Smith   PetscFunctionBegin;
5163501a2bdSLois Curfman McInnes   ierr = VecCopy(yy,zz);CHKERRQ(ierr);
5177c922b88SBarry Smith   ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr);
518ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
519ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
5203a40ed3dSBarry Smith   PetscFunctionReturn(0);
521096963f5SLois Curfman McInnes }
522096963f5SLois Curfman McInnes 
5234a2ae208SSatish Balay #undef __FUNCT__
5244a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIDense"
525dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v)
5268965ea79SLois Curfman McInnes {
52739ddd567SLois Curfman McInnes   Mat_MPIDense   *a    = (Mat_MPIDense*)A->data;
528096963f5SLois Curfman McInnes   Mat_SeqDense   *aloc = (Mat_SeqDense*)a->A->data;
529dfbe8321SBarry Smith   PetscErrorCode ierr;
530d0f46423SBarry Smith   PetscInt       len,i,n,m = A->rmap->n,radd;
53187828ca2SBarry Smith   PetscScalar    *x,zero = 0.0;
532ed3cc1f0SBarry Smith 
5333a40ed3dSBarry Smith   PetscFunctionBegin;
5342dcb1b2aSMatthew Knepley   ierr = VecSet(v,zero);CHKERRQ(ierr);
5351ebc52fbSHong Zhang   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
536096963f5SLois Curfman McInnes   ierr = VecGetSize(v,&n);CHKERRQ(ierr);
537e32f2f54SBarry Smith   if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec");
538d0f46423SBarry Smith   len  = PetscMin(a->A->rmap->n,a->A->cmap->n);
539d0f46423SBarry Smith   radd = A->rmap->rstart*m;
54044cd7ae7SLois Curfman McInnes   for (i=0; i<len; i++) {
541096963f5SLois Curfman McInnes     x[i] = aloc->v[radd + i*m + i];
542096963f5SLois Curfman McInnes   }
5431ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
5443a40ed3dSBarry Smith   PetscFunctionReturn(0);
5458965ea79SLois Curfman McInnes }
5468965ea79SLois Curfman McInnes 
5474a2ae208SSatish Balay #undef __FUNCT__
5484a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIDense"
549dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat)
5508965ea79SLois Curfman McInnes {
5513501a2bdSLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
552dfbe8321SBarry Smith   PetscErrorCode ierr;
553ed3cc1f0SBarry Smith 
5543a40ed3dSBarry Smith   PetscFunctionBegin;
555aa482453SBarry Smith #if defined(PETSC_USE_LOG)
556d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N);
5578965ea79SLois Curfman McInnes #endif
5588798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
5596bf464f9SBarry Smith   ierr = MatDestroy(&mdn->A);CHKERRQ(ierr);
5606bf464f9SBarry Smith   ierr = VecDestroy(&mdn->lvec);CHKERRQ(ierr);
5616bf464f9SBarry Smith   ierr = VecScatterDestroy(&mdn->Mvctx);CHKERRQ(ierr);
56201b82886SBarry Smith 
563bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
564dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
5658baccfbdSHong Zhang 
5668baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr);
5678baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr);
5688baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
5698baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL);CHKERRQ(ierr);
5708baccfbdSHong Zhang #endif
571bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr);
572bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL);CHKERRQ(ierr);
573bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
574bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
575bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
5768baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMult_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
5778baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
5788baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
5793a40ed3dSBarry Smith   PetscFunctionReturn(0);
5808965ea79SLois Curfman McInnes }
58139ddd567SLois Curfman McInnes 
5824a2ae208SSatish Balay #undef __FUNCT__
5834a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_Binary"
5846849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_Binary(Mat mat,PetscViewer viewer)
5858965ea79SLois Curfman McInnes {
58639ddd567SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)mat->data;
587dfbe8321SBarry Smith   PetscErrorCode    ierr;
588aa05aa95SBarry Smith   PetscViewerFormat format;
589aa05aa95SBarry Smith   int               fd;
590d0f46423SBarry Smith   PetscInt          header[4],mmax,N = mat->cmap->N,i,j,m,k;
591aa05aa95SBarry Smith   PetscMPIInt       rank,tag  = ((PetscObject)viewer)->tag,size;
592578230a0SSatish Balay   PetscScalar       *work,*v,*vv;
593aa05aa95SBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)mdn->A->data;
5947056b6fcSBarry Smith 
5953a40ed3dSBarry Smith   PetscFunctionBegin;
59639ddd567SLois Curfman McInnes   if (mdn->size == 1) {
59739ddd567SLois Curfman McInnes     ierr = MatView(mdn->A,viewer);CHKERRQ(ierr);
598aa05aa95SBarry Smith   } else {
599aa05aa95SBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
600ce94432eSBarry Smith     ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
601ce94432eSBarry Smith     ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr);
602aa05aa95SBarry Smith 
603aa05aa95SBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
604f4403165SShri Abhyankar     if (format == PETSC_VIEWER_NATIVE) {
605aa05aa95SBarry Smith 
606aa05aa95SBarry Smith       if (!rank) {
607aa05aa95SBarry Smith         /* store the matrix as a dense matrix */
6080700a824SBarry Smith         header[0] = MAT_FILE_CLASSID;
609d0f46423SBarry Smith         header[1] = mat->rmap->N;
610aa05aa95SBarry Smith         header[2] = N;
611aa05aa95SBarry Smith         header[3] = MATRIX_BINARY_FORMAT_DENSE;
612aa05aa95SBarry Smith         ierr      = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
613aa05aa95SBarry Smith 
614aa05aa95SBarry Smith         /* get largest work array needed for transposing array */
615d0f46423SBarry Smith         mmax = mat->rmap->n;
616aa05aa95SBarry Smith         for (i=1; i<size; i++) {
617d0f46423SBarry Smith           mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]);
6188965ea79SLois Curfman McInnes         }
619785e854fSJed Brown         ierr = PetscMalloc1(mmax*N,&work);CHKERRQ(ierr);
620aa05aa95SBarry Smith 
621aa05aa95SBarry Smith         /* write out local array, by rows */
622d0f46423SBarry Smith         m = mat->rmap->n;
623aa05aa95SBarry Smith         v = a->v;
624aa05aa95SBarry Smith         for (j=0; j<N; j++) {
625aa05aa95SBarry Smith           for (i=0; i<m; i++) {
626578230a0SSatish Balay             work[j + i*N] = *v++;
627aa05aa95SBarry Smith           }
628aa05aa95SBarry Smith         }
629aa05aa95SBarry Smith         ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr);
630aa05aa95SBarry Smith         /* get largest work array to receive messages from other processes, excludes process zero */
631aa05aa95SBarry Smith         mmax = 0;
632aa05aa95SBarry Smith         for (i=1; i<size; i++) {
633d0f46423SBarry Smith           mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]);
634aa05aa95SBarry Smith         }
635785e854fSJed Brown         ierr = PetscMalloc1(mmax*N,&vv);CHKERRQ(ierr);
636aa05aa95SBarry Smith         for (k = 1; k < size; k++) {
637f8009846SMatthew Knepley           v    = vv;
638d0f46423SBarry Smith           m    = mat->rmap->range[k+1] - mat->rmap->range[k];
639ce94432eSBarry Smith           ierr = MPIULong_Recv(v,m*N,MPIU_SCALAR,k,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
640aa05aa95SBarry Smith 
641aa05aa95SBarry Smith           for (j = 0; j < N; j++) {
642aa05aa95SBarry Smith             for (i = 0; i < m; i++) {
643578230a0SSatish Balay               work[j + i*N] = *v++;
644aa05aa95SBarry Smith             }
645aa05aa95SBarry Smith           }
646aa05aa95SBarry Smith           ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr);
647aa05aa95SBarry Smith         }
648aa05aa95SBarry Smith         ierr = PetscFree(work);CHKERRQ(ierr);
649578230a0SSatish Balay         ierr = PetscFree(vv);CHKERRQ(ierr);
650aa05aa95SBarry Smith       } else {
651ce94432eSBarry Smith         ierr = MPIULong_Send(a->v,mat->rmap->n*mat->cmap->N,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
652aa05aa95SBarry Smith       }
653eb3f98d2SBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"To store a parallel dense matrix you must first call PetscViewerSetFormat(viewer,PETSC_VIEWER_NATIVE)");
654aa05aa95SBarry Smith   }
6553a40ed3dSBarry Smith   PetscFunctionReturn(0);
6568965ea79SLois Curfman McInnes }
6578965ea79SLois Curfman McInnes 
6587da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqDense(Mat,PetscViewer);
6599804daf3SBarry Smith #include <petscdraw.h>
6604a2ae208SSatish Balay #undef __FUNCT__
6614a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_ASCIIorDraworSocket"
6626849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
6638965ea79SLois Curfman McInnes {
66439ddd567SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)mat->data;
665dfbe8321SBarry Smith   PetscErrorCode    ierr;
6667da1fb6eSBarry Smith   PetscMPIInt       rank = mdn->rank;
66719fd82e9SBarry Smith   PetscViewerType   vtype;
668ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
669b0a32e0cSBarry Smith   PetscViewer       sviewer;
670f3ef73ceSBarry Smith   PetscViewerFormat format;
6718965ea79SLois Curfman McInnes 
6723a40ed3dSBarry Smith   PetscFunctionBegin;
673251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
674251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
67532077d6dSBarry Smith   if (iascii) {
676b0a32e0cSBarry Smith     ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr);
677b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
678456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
6794e220ebcSLois Curfman McInnes       MatInfo info;
680888f2ed8SSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
6817b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr);
6827b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"  [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr);
683b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
6847b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr);
6855d00a290SHong Zhang       ierr = VecScatterView(mdn->Mvctx,viewer);CHKERRQ(ierr);
6863a40ed3dSBarry Smith       PetscFunctionReturn(0);
687fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
6883a40ed3dSBarry Smith       PetscFunctionReturn(0);
6898965ea79SLois Curfman McInnes     }
690f1af5d2fSBarry Smith   } else if (isdraw) {
691b0a32e0cSBarry Smith     PetscDraw draw;
692ace3abfcSBarry Smith     PetscBool isnull;
693f1af5d2fSBarry Smith 
694b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
695b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
696f1af5d2fSBarry Smith     if (isnull) PetscFunctionReturn(0);
697f1af5d2fSBarry Smith   }
69877ed5343SBarry Smith 
6997da1fb6eSBarry Smith   {
7008965ea79SLois Curfman McInnes     /* assemble the entire matrix onto first processor. */
7018965ea79SLois Curfman McInnes     Mat         A;
702d0f46423SBarry Smith     PetscInt    M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz;
703ba8c8a56SBarry Smith     PetscInt    *cols;
704ba8c8a56SBarry Smith     PetscScalar *vals;
7058965ea79SLois Curfman McInnes 
706ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
7078965ea79SLois Curfman McInnes     if (!rank) {
708f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
7093a40ed3dSBarry Smith     } else {
710f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
7118965ea79SLois Curfman McInnes     }
7127adad957SLisandro Dalcin     /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */
713878740d9SKris Buschelman     ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr);
7140298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr);
7153bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
7168965ea79SLois Curfman McInnes 
71739ddd567SLois Curfman McInnes     /* Copy the matrix ... This isn't the most efficient means,
71839ddd567SLois Curfman McInnes        but it's quick for now */
71951022da4SBarry Smith     A->insertmode = INSERT_VALUES;
7202205254eSKarl Rupp 
7212205254eSKarl Rupp     row = mat->rmap->rstart;
7222205254eSKarl Rupp     m   = mdn->A->rmap->n;
7238965ea79SLois Curfman McInnes     for (i=0; i<m; i++) {
724ba8c8a56SBarry Smith       ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr);
725ba8c8a56SBarry Smith       ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr);
726ba8c8a56SBarry Smith       ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr);
72739ddd567SLois Curfman McInnes       row++;
7288965ea79SLois Curfman McInnes     }
7298965ea79SLois Curfman McInnes 
7306d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
7316d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
732b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
733b9b97703SBarry Smith     if (!rank) {
7347da1fb6eSBarry Smith         ierr = MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr);
7358965ea79SLois Curfman McInnes     }
736b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
737b0a32e0cSBarry Smith     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
7386bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
7398965ea79SLois Curfman McInnes   }
7403a40ed3dSBarry Smith   PetscFunctionReturn(0);
7418965ea79SLois Curfman McInnes }
7428965ea79SLois Curfman McInnes 
7434a2ae208SSatish Balay #undef __FUNCT__
7444a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense"
745dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer)
7468965ea79SLois Curfman McInnes {
747dfbe8321SBarry Smith   PetscErrorCode ierr;
748ace3abfcSBarry Smith   PetscBool      iascii,isbinary,isdraw,issocket;
7498965ea79SLois Curfman McInnes 
750433994e6SBarry Smith   PetscFunctionBegin;
751251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
752251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
753251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
754251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
7550f5bd95cSBarry Smith 
75632077d6dSBarry Smith   if (iascii || issocket || isdraw) {
757f1af5d2fSBarry Smith     ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
7580f5bd95cSBarry Smith   } else if (isbinary) {
7593a40ed3dSBarry Smith     ierr = MatView_MPIDense_Binary(mat,viewer);CHKERRQ(ierr);
76011aeaf0aSBarry Smith   }
7613a40ed3dSBarry Smith   PetscFunctionReturn(0);
7628965ea79SLois Curfman McInnes }
7638965ea79SLois Curfman McInnes 
7644a2ae208SSatish Balay #undef __FUNCT__
7654a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIDense"
766dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info)
7678965ea79SLois Curfman McInnes {
7683501a2bdSLois Curfman McInnes   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
7693501a2bdSLois Curfman McInnes   Mat            mdn  = mat->A;
770dfbe8321SBarry Smith   PetscErrorCode ierr;
771329f5518SBarry Smith   PetscReal      isend[5],irecv[5];
7728965ea79SLois Curfman McInnes 
7733a40ed3dSBarry Smith   PetscFunctionBegin;
7744e220ebcSLois Curfman McInnes   info->block_size = 1.0;
7752205254eSKarl Rupp 
7764e220ebcSLois Curfman McInnes   ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr);
7772205254eSKarl Rupp 
7784e220ebcSLois Curfman McInnes   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
7794e220ebcSLois Curfman McInnes   isend[3] = info->memory;  isend[4] = info->mallocs;
7808965ea79SLois Curfman McInnes   if (flag == MAT_LOCAL) {
7814e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
7824e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
7834e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
7844e220ebcSLois Curfman McInnes     info->memory       = isend[3];
7854e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
7868965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
787ce94432eSBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
7882205254eSKarl Rupp 
7894e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
7904e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
7914e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
7924e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
7934e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
7948965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
795ce94432eSBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
7962205254eSKarl Rupp 
7974e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
7984e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
7994e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
8004e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
8014e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
8028965ea79SLois Curfman McInnes   }
8034e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
8044e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
8054e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
8063a40ed3dSBarry Smith   PetscFunctionReturn(0);
8078965ea79SLois Curfman McInnes }
8088965ea79SLois Curfman McInnes 
8094a2ae208SSatish Balay #undef __FUNCT__
8104a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIDense"
811ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg)
8128965ea79SLois Curfman McInnes {
81339ddd567SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
814dfbe8321SBarry Smith   PetscErrorCode ierr;
8158965ea79SLois Curfman McInnes 
8163a40ed3dSBarry Smith   PetscFunctionBegin;
81712c028f9SKris Buschelman   switch (op) {
818512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
81912c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
82012c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
8214e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
82212c028f9SKris Buschelman     break;
82312c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
8244e0d8c25SBarry Smith     a->roworiented = flg;
8252205254eSKarl Rupp 
8264e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
82712c028f9SKris Buschelman     break;
8284e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
82913fa8e87SLisandro Dalcin   case MAT_KEEP_NONZERO_PATTERN:
83012c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
831290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
83212c028f9SKris Buschelman     break;
83312c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
8344e0d8c25SBarry Smith     a->donotstash = flg;
83512c028f9SKris Buschelman     break;
83677e54ba9SKris Buschelman   case MAT_SYMMETRIC:
83777e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
8389a4540c5SBarry Smith   case MAT_HERMITIAN:
8399a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
840600fe468SBarry Smith   case MAT_IGNORE_LOWER_TRIANGULAR:
841290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
84277e54ba9SKris Buschelman     break;
84312c028f9SKris Buschelman   default:
844e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]);
8453a40ed3dSBarry Smith   }
8463a40ed3dSBarry Smith   PetscFunctionReturn(0);
8478965ea79SLois Curfman McInnes }
8488965ea79SLois Curfman McInnes 
8498965ea79SLois Curfman McInnes 
8504a2ae208SSatish Balay #undef __FUNCT__
8514a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIDense"
852dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr)
8535b2fa520SLois Curfman McInnes {
8545b2fa520SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)A->data;
8555b2fa520SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)mdn->A->data;
85687828ca2SBarry Smith   PetscScalar    *l,*r,x,*v;
857dfbe8321SBarry Smith   PetscErrorCode ierr;
858d0f46423SBarry Smith   PetscInt       i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n;
8595b2fa520SLois Curfman McInnes 
8605b2fa520SLois Curfman McInnes   PetscFunctionBegin;
86172d926a5SLois Curfman McInnes   ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr);
8625b2fa520SLois Curfman McInnes   if (ll) {
86372d926a5SLois Curfman McInnes     ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr);
864e32f2f54SBarry Smith     if (s2a != s2) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %d != %d.", s2a, s2);
8651ebc52fbSHong Zhang     ierr = VecGetArray(ll,&l);CHKERRQ(ierr);
8665b2fa520SLois Curfman McInnes     for (i=0; i<m; i++) {
8675b2fa520SLois Curfman McInnes       x = l[i];
8685b2fa520SLois Curfman McInnes       v = mat->v + i;
8695b2fa520SLois Curfman McInnes       for (j=0; j<n; j++) { (*v) *= x; v+= m;}
8705b2fa520SLois Curfman McInnes     }
8711ebc52fbSHong Zhang     ierr = VecRestoreArray(ll,&l);CHKERRQ(ierr);
872efee365bSSatish Balay     ierr = PetscLogFlops(n*m);CHKERRQ(ierr);
8735b2fa520SLois Curfman McInnes   }
8745b2fa520SLois Curfman McInnes   if (rr) {
875175be7b4SMatthew Knepley     ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr);
876e32f2f54SBarry Smith     if (s3a != s3) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3);
877ca9f406cSSatish Balay     ierr = VecScatterBegin(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
878ca9f406cSSatish Balay     ierr = VecScatterEnd(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
8791ebc52fbSHong Zhang     ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr);
8805b2fa520SLois Curfman McInnes     for (i=0; i<n; i++) {
8815b2fa520SLois Curfman McInnes       x = r[i];
8825b2fa520SLois Curfman McInnes       v = mat->v + i*m;
8832205254eSKarl Rupp       for (j=0; j<m; j++) (*v++) *= x;
8845b2fa520SLois Curfman McInnes     }
8851ebc52fbSHong Zhang     ierr = VecRestoreArray(mdn->lvec,&r);CHKERRQ(ierr);
886efee365bSSatish Balay     ierr = PetscLogFlops(n*m);CHKERRQ(ierr);
8875b2fa520SLois Curfman McInnes   }
8885b2fa520SLois Curfman McInnes   PetscFunctionReturn(0);
8895b2fa520SLois Curfman McInnes }
8905b2fa520SLois Curfman McInnes 
8914a2ae208SSatish Balay #undef __FUNCT__
8924a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIDense"
893dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm)
894096963f5SLois Curfman McInnes {
8953501a2bdSLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)A->data;
8963501a2bdSLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)mdn->A->data;
897dfbe8321SBarry Smith   PetscErrorCode ierr;
89813f74950SBarry Smith   PetscInt       i,j;
899329f5518SBarry Smith   PetscReal      sum = 0.0;
90087828ca2SBarry Smith   PetscScalar    *v  = mat->v;
9013501a2bdSLois Curfman McInnes 
9023a40ed3dSBarry Smith   PetscFunctionBegin;
9033501a2bdSLois Curfman McInnes   if (mdn->size == 1) {
904064f8208SBarry Smith     ierr =  MatNorm(mdn->A,type,nrm);CHKERRQ(ierr);
9053501a2bdSLois Curfman McInnes   } else {
9063501a2bdSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
907d0f46423SBarry Smith       for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) {
908329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
9093501a2bdSLois Curfman McInnes       }
910ce94432eSBarry Smith       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
9118f1a2a5eSBarry Smith       *nrm = PetscSqrtReal(*nrm);
912dc0b31edSSatish Balay       ierr = PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr);
9133a40ed3dSBarry Smith     } else if (type == NORM_1) {
914329f5518SBarry Smith       PetscReal *tmp,*tmp2;
915dcca6d9dSJed Brown       ierr = PetscMalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2);CHKERRQ(ierr);
91674ed9c26SBarry Smith       ierr = PetscMemzero(tmp,A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
91774ed9c26SBarry Smith       ierr = PetscMemzero(tmp2,A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
918064f8208SBarry Smith       *nrm = 0.0;
9193501a2bdSLois Curfman McInnes       v    = mat->v;
920d0f46423SBarry Smith       for (j=0; j<mdn->A->cmap->n; j++) {
921d0f46423SBarry Smith         for (i=0; i<mdn->A->rmap->n; i++) {
92267e560aaSBarry Smith           tmp[j] += PetscAbsScalar(*v);  v++;
9233501a2bdSLois Curfman McInnes         }
9243501a2bdSLois Curfman McInnes       }
925ce94432eSBarry Smith       ierr = MPI_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
926d0f46423SBarry Smith       for (j=0; j<A->cmap->N; j++) {
927064f8208SBarry Smith         if (tmp2[j] > *nrm) *nrm = tmp2[j];
9283501a2bdSLois Curfman McInnes       }
92974ed9c26SBarry Smith       ierr = PetscFree2(tmp,tmp);CHKERRQ(ierr);
930d0f46423SBarry Smith       ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr);
9313a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
932329f5518SBarry Smith       PetscReal ntemp;
9333501a2bdSLois Curfman McInnes       ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr);
934ce94432eSBarry Smith       ierr = MPI_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
935ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm");
9363501a2bdSLois Curfman McInnes   }
9373a40ed3dSBarry Smith   PetscFunctionReturn(0);
9383501a2bdSLois Curfman McInnes }
9393501a2bdSLois Curfman McInnes 
9404a2ae208SSatish Balay #undef __FUNCT__
9414a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIDense"
942fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout)
9433501a2bdSLois Curfman McInnes {
9443501a2bdSLois Curfman McInnes   Mat_MPIDense   *a    = (Mat_MPIDense*)A->data;
9453501a2bdSLois Curfman McInnes   Mat_SeqDense   *Aloc = (Mat_SeqDense*)a->A->data;
9463501a2bdSLois Curfman McInnes   Mat            B;
947d0f46423SBarry Smith   PetscInt       M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart;
9486849ba73SBarry Smith   PetscErrorCode ierr;
94913f74950SBarry Smith   PetscInt       j,i;
95087828ca2SBarry Smith   PetscScalar    *v;
9513501a2bdSLois Curfman McInnes 
9523a40ed3dSBarry Smith   PetscFunctionBegin;
953ce94432eSBarry Smith   if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Supports square matrix only in-place");
954fc4dec0aSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || A == *matout) {
955ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
956d0f46423SBarry Smith     ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr);
9577adad957SLisandro Dalcin     ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr);
9580298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(B,NULL);CHKERRQ(ierr);
959fc4dec0aSBarry Smith   } else {
960fc4dec0aSBarry Smith     B = *matout;
961fc4dec0aSBarry Smith   }
9623501a2bdSLois Curfman McInnes 
963d0f46423SBarry Smith   m    = a->A->rmap->n; n = a->A->cmap->n; v = Aloc->v;
964785e854fSJed Brown   ierr = PetscMalloc1(m,&rwork);CHKERRQ(ierr);
9653501a2bdSLois Curfman McInnes   for (i=0; i<m; i++) rwork[i] = rstart + i;
9661acff37aSSatish Balay   for (j=0; j<n; j++) {
9673501a2bdSLois Curfman McInnes     ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr);
9683501a2bdSLois Curfman McInnes     v   += m;
9693501a2bdSLois Curfman McInnes   }
970606d414cSSatish Balay   ierr = PetscFree(rwork);CHKERRQ(ierr);
9716d4a8577SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
9726d4a8577SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
973815cbec1SBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout != A) {
9743501a2bdSLois Curfman McInnes     *matout = B;
9753501a2bdSLois Curfman McInnes   } else {
976eb6b5d47SBarry Smith     ierr = MatHeaderMerge(A,B);CHKERRQ(ierr);
9773501a2bdSLois Curfman McInnes   }
9783a40ed3dSBarry Smith   PetscFunctionReturn(0);
979096963f5SLois Curfman McInnes }
980096963f5SLois Curfman McInnes 
98144cd7ae7SLois Curfman McInnes 
9826849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*);
983d84338a6SBarry Smith extern PetscErrorCode MatScale_MPIDense(Mat,PetscScalar);
9848965ea79SLois Curfman McInnes 
9854a2ae208SSatish Balay #undef __FUNCT__
9864994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPIDense"
9874994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A)
988273d9f13SBarry Smith {
989dfbe8321SBarry Smith   PetscErrorCode ierr;
990273d9f13SBarry Smith 
991273d9f13SBarry Smith   PetscFunctionBegin;
992273d9f13SBarry Smith   ierr =  MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr);
993273d9f13SBarry Smith   PetscFunctionReturn(0);
994273d9f13SBarry Smith }
995273d9f13SBarry Smith 
99630716080SHong Zhang #undef __FUNCT__
997488007eeSBarry Smith #define __FUNCT__ "MatAXPY_MPIDense"
998488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str)
999488007eeSBarry Smith {
1000488007eeSBarry Smith   PetscErrorCode ierr;
1001488007eeSBarry Smith   Mat_MPIDense   *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data;
1002488007eeSBarry Smith 
1003488007eeSBarry Smith   PetscFunctionBegin;
1004488007eeSBarry Smith   ierr = MatAXPY(A->A,alpha,B->A,str);CHKERRQ(ierr);
1005a3fa217bSJose E. Roman   ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
1006488007eeSBarry Smith   PetscFunctionReturn(0);
1007488007eeSBarry Smith }
1008488007eeSBarry Smith 
1009ba337c44SJed Brown #undef __FUNCT__
1010ba337c44SJed Brown #define __FUNCT__ "MatConjugate_MPIDense"
10117087cfbeSBarry Smith PetscErrorCode  MatConjugate_MPIDense(Mat mat)
1012ba337c44SJed Brown {
1013ba337c44SJed Brown   Mat_MPIDense   *a = (Mat_MPIDense*)mat->data;
1014ba337c44SJed Brown   PetscErrorCode ierr;
1015ba337c44SJed Brown 
1016ba337c44SJed Brown   PetscFunctionBegin;
1017ba337c44SJed Brown   ierr = MatConjugate(a->A);CHKERRQ(ierr);
1018ba337c44SJed Brown   PetscFunctionReturn(0);
1019ba337c44SJed Brown }
1020ba337c44SJed Brown 
1021ba337c44SJed Brown #undef __FUNCT__
1022ba337c44SJed Brown #define __FUNCT__ "MatRealPart_MPIDense"
1023ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A)
1024ba337c44SJed Brown {
1025ba337c44SJed Brown   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
1026ba337c44SJed Brown   PetscErrorCode ierr;
1027ba337c44SJed Brown 
1028ba337c44SJed Brown   PetscFunctionBegin;
1029ba337c44SJed Brown   ierr = MatRealPart(a->A);CHKERRQ(ierr);
1030ba337c44SJed Brown   PetscFunctionReturn(0);
1031ba337c44SJed Brown }
1032ba337c44SJed Brown 
1033ba337c44SJed Brown #undef __FUNCT__
1034ba337c44SJed Brown #define __FUNCT__ "MatImaginaryPart_MPIDense"
1035ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A)
1036ba337c44SJed Brown {
1037ba337c44SJed Brown   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
1038ba337c44SJed Brown   PetscErrorCode ierr;
1039ba337c44SJed Brown 
1040ba337c44SJed Brown   PetscFunctionBegin;
1041ba337c44SJed Brown   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
1042ba337c44SJed Brown   PetscFunctionReturn(0);
1043ba337c44SJed Brown }
1044ba337c44SJed Brown 
10450716a85fSBarry Smith extern PetscErrorCode MatGetColumnNorms_SeqDense(Mat,NormType,PetscReal*);
10460716a85fSBarry Smith #undef __FUNCT__
10470716a85fSBarry Smith #define __FUNCT__ "MatGetColumnNorms_MPIDense"
10480716a85fSBarry Smith PetscErrorCode MatGetColumnNorms_MPIDense(Mat A,NormType type,PetscReal *norms)
10490716a85fSBarry Smith {
10500716a85fSBarry Smith   PetscErrorCode ierr;
10510716a85fSBarry Smith   PetscInt       i,n;
10520716a85fSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*) A->data;
10530716a85fSBarry Smith   PetscReal      *work;
10540716a85fSBarry Smith 
10550716a85fSBarry Smith   PetscFunctionBegin;
10560298fd71SBarry Smith   ierr = MatGetSize(A,NULL,&n);CHKERRQ(ierr);
1057785e854fSJed Brown   ierr = PetscMalloc1(n,&work);CHKERRQ(ierr);
10580716a85fSBarry Smith   ierr = MatGetColumnNorms_SeqDense(a->A,type,work);CHKERRQ(ierr);
10590716a85fSBarry Smith   if (type == NORM_2) {
10600716a85fSBarry Smith     for (i=0; i<n; i++) work[i] *= work[i];
10610716a85fSBarry Smith   }
10620716a85fSBarry Smith   if (type == NORM_INFINITY) {
10630716a85fSBarry Smith     ierr = MPI_Allreduce(work,norms,n,MPIU_REAL,MPIU_MAX,A->hdr.comm);CHKERRQ(ierr);
10640716a85fSBarry Smith   } else {
10650716a85fSBarry Smith     ierr = MPI_Allreduce(work,norms,n,MPIU_REAL,MPIU_SUM,A->hdr.comm);CHKERRQ(ierr);
10660716a85fSBarry Smith   }
10670716a85fSBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
10680716a85fSBarry Smith   if (type == NORM_2) {
10698f1a2a5eSBarry Smith     for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]);
10700716a85fSBarry Smith   }
10710716a85fSBarry Smith   PetscFunctionReturn(0);
10720716a85fSBarry Smith }
10730716a85fSBarry Smith 
107473a71a0fSBarry Smith #undef __FUNCT__
107573a71a0fSBarry Smith #define __FUNCT__ "MatSetRandom_MPIDense"
107673a71a0fSBarry Smith static PetscErrorCode  MatSetRandom_MPIDense(Mat x,PetscRandom rctx)
107773a71a0fSBarry Smith {
107873a71a0fSBarry Smith   Mat_MPIDense   *d = (Mat_MPIDense*)x->data;
107973a71a0fSBarry Smith   PetscErrorCode ierr;
108073a71a0fSBarry Smith   PetscScalar    *a;
108173a71a0fSBarry Smith   PetscInt       m,n,i;
108273a71a0fSBarry Smith 
108373a71a0fSBarry Smith   PetscFunctionBegin;
108473a71a0fSBarry Smith   ierr = MatGetSize(d->A,&m,&n);CHKERRQ(ierr);
10858c778c55SBarry Smith   ierr = MatDenseGetArray(d->A,&a);CHKERRQ(ierr);
108673a71a0fSBarry Smith   for (i=0; i<m*n; i++) {
108773a71a0fSBarry Smith     ierr = PetscRandomGetValue(rctx,a+i);CHKERRQ(ierr);
108873a71a0fSBarry Smith   }
10898c778c55SBarry Smith   ierr = MatDenseRestoreArray(d->A,&a);CHKERRQ(ierr);
109073a71a0fSBarry Smith   PetscFunctionReturn(0);
109173a71a0fSBarry Smith }
109273a71a0fSBarry Smith 
10938965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/
109409dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense,
109509dc0095SBarry Smith                                         MatGetRow_MPIDense,
109609dc0095SBarry Smith                                         MatRestoreRow_MPIDense,
109709dc0095SBarry Smith                                         MatMult_MPIDense,
109897304618SKris Buschelman                                 /*  4*/ MatMultAdd_MPIDense,
10997c922b88SBarry Smith                                         MatMultTranspose_MPIDense,
11007c922b88SBarry Smith                                         MatMultTransposeAdd_MPIDense,
11018965ea79SLois Curfman McInnes                                         0,
110209dc0095SBarry Smith                                         0,
110309dc0095SBarry Smith                                         0,
110497304618SKris Buschelman                                 /* 10*/ 0,
110509dc0095SBarry Smith                                         0,
110609dc0095SBarry Smith                                         0,
110709dc0095SBarry Smith                                         0,
110809dc0095SBarry Smith                                         MatTranspose_MPIDense,
110997304618SKris Buschelman                                 /* 15*/ MatGetInfo_MPIDense,
11106e4ee0c6SHong Zhang                                         MatEqual_MPIDense,
111109dc0095SBarry Smith                                         MatGetDiagonal_MPIDense,
11125b2fa520SLois Curfman McInnes                                         MatDiagonalScale_MPIDense,
111309dc0095SBarry Smith                                         MatNorm_MPIDense,
111497304618SKris Buschelman                                 /* 20*/ MatAssemblyBegin_MPIDense,
111509dc0095SBarry Smith                                         MatAssemblyEnd_MPIDense,
111609dc0095SBarry Smith                                         MatSetOption_MPIDense,
111709dc0095SBarry Smith                                         MatZeroEntries_MPIDense,
1118d519adbfSMatthew Knepley                                 /* 24*/ MatZeroRows_MPIDense,
1119919b68f7SBarry Smith                                         0,
112001b82886SBarry Smith                                         0,
112101b82886SBarry Smith                                         0,
112201b82886SBarry Smith                                         0,
11234994cf47SJed Brown                                 /* 29*/ MatSetUp_MPIDense,
1124273d9f13SBarry Smith                                         0,
112509dc0095SBarry Smith                                         0,
11268c778c55SBarry Smith                                         0,
11278c778c55SBarry Smith                                         0,
1128d519adbfSMatthew Knepley                                 /* 34*/ MatDuplicate_MPIDense,
112909dc0095SBarry Smith                                         0,
113009dc0095SBarry Smith                                         0,
113109dc0095SBarry Smith                                         0,
113209dc0095SBarry Smith                                         0,
1133d519adbfSMatthew Knepley                                 /* 39*/ MatAXPY_MPIDense,
11342ce60cd0SSatish Balay                                         MatGetSubMatrices_MPIDense,
113509dc0095SBarry Smith                                         0,
113609dc0095SBarry Smith                                         MatGetValues_MPIDense,
113709dc0095SBarry Smith                                         0,
1138d519adbfSMatthew Knepley                                 /* 44*/ 0,
113909dc0095SBarry Smith                                         MatScale_MPIDense,
114009dc0095SBarry Smith                                         0,
114109dc0095SBarry Smith                                         0,
114209dc0095SBarry Smith                                         0,
114373a71a0fSBarry Smith                                 /* 49*/ MatSetRandom_MPIDense,
114409dc0095SBarry Smith                                         0,
114509dc0095SBarry Smith                                         0,
114609dc0095SBarry Smith                                         0,
114709dc0095SBarry Smith                                         0,
1148d519adbfSMatthew Knepley                                 /* 54*/ 0,
114909dc0095SBarry Smith                                         0,
115009dc0095SBarry Smith                                         0,
115109dc0095SBarry Smith                                         0,
115209dc0095SBarry Smith                                         0,
1153d519adbfSMatthew Knepley                                 /* 59*/ MatGetSubMatrix_MPIDense,
1154b9b97703SBarry Smith                                         MatDestroy_MPIDense,
1155b9b97703SBarry Smith                                         MatView_MPIDense,
1156357abbc8SBarry Smith                                         0,
115797304618SKris Buschelman                                         0,
1158d519adbfSMatthew Knepley                                 /* 64*/ 0,
115997304618SKris Buschelman                                         0,
116097304618SKris Buschelman                                         0,
116197304618SKris Buschelman                                         0,
116297304618SKris Buschelman                                         0,
1163d519adbfSMatthew Knepley                                 /* 69*/ 0,
116497304618SKris Buschelman                                         0,
116597304618SKris Buschelman                                         0,
116697304618SKris Buschelman                                         0,
116797304618SKris Buschelman                                         0,
1168d519adbfSMatthew Knepley                                 /* 74*/ 0,
116997304618SKris Buschelman                                         0,
117097304618SKris Buschelman                                         0,
117197304618SKris Buschelman                                         0,
117297304618SKris Buschelman                                         0,
1173d519adbfSMatthew Knepley                                 /* 79*/ 0,
117497304618SKris Buschelman                                         0,
117597304618SKris Buschelman                                         0,
117697304618SKris Buschelman                                         0,
11775bba2384SShri Abhyankar                                 /* 83*/ MatLoad_MPIDense,
1178865e5f61SKris Buschelman                                         0,
1179865e5f61SKris Buschelman                                         0,
1180865e5f61SKris Buschelman                                         0,
1181865e5f61SKris Buschelman                                         0,
1182865e5f61SKris Buschelman                                         0,
1183d519adbfSMatthew Knepley                                 /* 89*/
1184865e5f61SKris Buschelman                                         0,
1185865e5f61SKris Buschelman                                         0,
1186865e5f61SKris Buschelman                                         0,
11872fbe02b9SBarry Smith                                         0,
1188ba337c44SJed Brown                                         0,
1189d519adbfSMatthew Knepley                                 /* 94*/ 0,
1190865e5f61SKris Buschelman                                         0,
1191865e5f61SKris Buschelman                                         0,
1192ba337c44SJed Brown                                         0,
1193ba337c44SJed Brown                                         0,
1194ba337c44SJed Brown                                 /* 99*/ 0,
1195ba337c44SJed Brown                                         0,
1196ba337c44SJed Brown                                         0,
1197ba337c44SJed Brown                                         MatConjugate_MPIDense,
1198ba337c44SJed Brown                                         0,
1199ba337c44SJed Brown                                 /*104*/ 0,
1200ba337c44SJed Brown                                         MatRealPart_MPIDense,
1201ba337c44SJed Brown                                         MatImaginaryPart_MPIDense,
120286d161a7SShri Abhyankar                                         0,
120386d161a7SShri Abhyankar                                         0,
120486d161a7SShri Abhyankar                                 /*109*/ 0,
120586d161a7SShri Abhyankar                                         0,
120686d161a7SShri Abhyankar                                         0,
120786d161a7SShri Abhyankar                                         0,
120886d161a7SShri Abhyankar                                         0,
120986d161a7SShri Abhyankar                                 /*114*/ 0,
121086d161a7SShri Abhyankar                                         0,
121186d161a7SShri Abhyankar                                         0,
121286d161a7SShri Abhyankar                                         0,
121386d161a7SShri Abhyankar                                         0,
121486d161a7SShri Abhyankar                                 /*119*/ 0,
121586d161a7SShri Abhyankar                                         0,
121686d161a7SShri Abhyankar                                         0,
12170716a85fSBarry Smith                                         0,
12180716a85fSBarry Smith                                         0,
12190716a85fSBarry Smith                                 /*124*/ 0,
12203964eb88SJed Brown                                         MatGetColumnNorms_MPIDense,
12213964eb88SJed Brown                                         0,
12223964eb88SJed Brown                                         0,
12233964eb88SJed Brown                                         0,
12243964eb88SJed Brown                                 /*129*/ 0,
12253964eb88SJed Brown                                         0,
12263964eb88SJed Brown                                         0,
12273964eb88SJed Brown                                         0,
12283964eb88SJed Brown                                         0,
12293964eb88SJed Brown                                 /*134*/ 0,
12303964eb88SJed Brown                                         0,
12313964eb88SJed Brown                                         0,
12323964eb88SJed Brown                                         0,
12333964eb88SJed Brown                                         0,
12343964eb88SJed Brown                                 /*139*/ 0,
1235f9426fe0SMark Adams                                         0,
12363964eb88SJed Brown                                         0
1237ba337c44SJed Brown };
12388965ea79SLois Curfman McInnes 
12394a2ae208SSatish Balay #undef __FUNCT__
1240a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIDenseSetPreallocation_MPIDense"
12417087cfbeSBarry Smith PetscErrorCode  MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data)
1242a23d5eceSKris Buschelman {
1243a23d5eceSKris Buschelman   Mat_MPIDense   *a;
1244dfbe8321SBarry Smith   PetscErrorCode ierr;
1245a23d5eceSKris Buschelman 
1246a23d5eceSKris Buschelman   PetscFunctionBegin;
1247a23d5eceSKris Buschelman   mat->preallocated = PETSC_TRUE;
1248a23d5eceSKris Buschelman   /* Note:  For now, when data is specified above, this assumes the user correctly
1249a23d5eceSKris Buschelman    allocates the local dense storage space.  We should add error checking. */
1250a23d5eceSKris Buschelman 
1251a23d5eceSKris Buschelman   a       = (Mat_MPIDense*)mat->data;
125234ef9618SShri Abhyankar   ierr    = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr);
125334ef9618SShri Abhyankar   ierr    = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr);
125434ef9618SShri Abhyankar   a->nvec = mat->cmap->n;
125534ef9618SShri Abhyankar 
1256f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr);
1257d0f46423SBarry Smith   ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr);
12585c5985e7SKris Buschelman   ierr = MatSetType(a->A,MATSEQDENSE);CHKERRQ(ierr);
12595c5985e7SKris Buschelman   ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr);
12603bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
1261a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1262a23d5eceSKris Buschelman }
1263a23d5eceSKris Buschelman 
126465b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
1265a23d5eceSKris Buschelman #undef __FUNCT__
12668baccfbdSHong Zhang #define __FUNCT__ "MatConvert_MPIDense_Elemental"
12678baccfbdSHong Zhang PETSC_EXTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat)
12688baccfbdSHong Zhang {
12698ea901baSHong Zhang   Mat            mat_elemental;
12708ea901baSHong Zhang   PetscErrorCode ierr;
127165b80a83SHong Zhang   PetscScalar    *array,*v_rowwise;
12728ea901baSHong Zhang   PetscInt       m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,j,k,*rows,*cols;
12738ea901baSHong Zhang 
12748baccfbdSHong Zhang   PetscFunctionBegin;
127565b80a83SHong Zhang   ierr = PetscMalloc3(m*N,&v_rowwise,m,&rows,N,&cols);CHKERRQ(ierr);
12768ea901baSHong Zhang   ierr = MatDenseGetArray(A,&array);CHKERRQ(ierr);
127765b80a83SHong Zhang   /* convert column-wise array into row-wise v_rowwise, see MatSetValues_Elemental() */
12788ea901baSHong Zhang   k = 0;
12798ea901baSHong Zhang   for (j=0; j<N; j++) {
12808ea901baSHong Zhang     cols[j] = j;
12818ea901baSHong Zhang     for (i=0; i<m; i++) {
128265b80a83SHong Zhang       v_rowwise[i*N+j] = array[k++];
12838ea901baSHong Zhang     }
12848ea901baSHong Zhang   }
12858ea901baSHong Zhang   for (i=0; i<m; i++) {
12868ea901baSHong Zhang     rows[i] = rstart + i;
12878ea901baSHong Zhang   }
12888ea901baSHong Zhang   ierr = MatDenseRestoreArray(A,&array);CHKERRQ(ierr);
12898ea901baSHong Zhang 
12908ea901baSHong Zhang   ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr);
12918ea901baSHong Zhang   ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
12928ea901baSHong Zhang   ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr);
12938ea901baSHong Zhang   ierr = MatSetUp(mat_elemental);CHKERRQ(ierr);
12948ea901baSHong Zhang 
12958ea901baSHong Zhang   /* PETSc-Elemental interaface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */
129665b80a83SHong Zhang   ierr = MatSetValues(mat_elemental,m,rows,N,cols,v_rowwise,ADD_VALUES);CHKERRQ(ierr);
12978ea901baSHong Zhang   ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
12988ea901baSHong Zhang   ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
129965b80a83SHong Zhang   ierr = PetscFree3(v_rowwise,rows,cols);CHKERRQ(ierr);
13008ea901baSHong Zhang 
13018ea901baSHong Zhang   if (reuse == MAT_REUSE_MATRIX) {
13028ea901baSHong Zhang     ierr = MatHeaderReplace(A,mat_elemental);CHKERRQ(ierr);
13038ea901baSHong Zhang   } else {
13048ea901baSHong Zhang     *newmat = mat_elemental;
13058ea901baSHong Zhang   }
13068baccfbdSHong Zhang   PetscFunctionReturn(0);
13078baccfbdSHong Zhang }
130865b80a83SHong Zhang #endif
13098baccfbdSHong Zhang 
13108baccfbdSHong Zhang #undef __FUNCT__
13114a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIDense"
13128cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat)
1313273d9f13SBarry Smith {
1314273d9f13SBarry Smith   Mat_MPIDense   *a;
1315dfbe8321SBarry Smith   PetscErrorCode ierr;
1316273d9f13SBarry Smith 
1317273d9f13SBarry Smith   PetscFunctionBegin;
1318b00a9115SJed Brown   ierr      = PetscNewLog(mat,&a);CHKERRQ(ierr);
1319b0a32e0cSBarry Smith   mat->data = (void*)a;
1320273d9f13SBarry Smith   ierr      = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1321273d9f13SBarry Smith 
1322273d9f13SBarry Smith   mat->insertmode = NOT_SET_VALUES;
1323ce94432eSBarry Smith   ierr            = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&a->rank);CHKERRQ(ierr);
1324ce94432eSBarry Smith   ierr            = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&a->size);CHKERRQ(ierr);
1325273d9f13SBarry Smith 
1326273d9f13SBarry Smith   /* build cache for off array entries formed */
1327273d9f13SBarry Smith   a->donotstash = PETSC_FALSE;
13282205254eSKarl Rupp 
1329ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash);CHKERRQ(ierr);
1330273d9f13SBarry Smith 
1331273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
1332273d9f13SBarry Smith   a->lvec        = 0;
1333273d9f13SBarry Smith   a->Mvctx       = 0;
1334273d9f13SBarry Smith   a->roworiented = PETSC_TRUE;
1335273d9f13SBarry Smith 
1336bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense);CHKERRQ(ierr);
1337bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense);CHKERRQ(ierr);
13388baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
13398baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental);CHKERRQ(ierr);
13408baccfbdSHong Zhang #endif
1341bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPIDense);CHKERRQ(ierr);
1342bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr);
1343bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",MatMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr);
1344bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr);
1345bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr);
13468949adfdSHong Zhang 
13478949adfdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMult_mpiaij_mpidense_C",MatTransposeMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr);
13488949adfdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",MatTransposeMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr);
13498949adfdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",MatTransposeMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr);
135038aed534SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr);
1351273d9f13SBarry Smith   PetscFunctionReturn(0);
1352273d9f13SBarry Smith }
1353273d9f13SBarry Smith 
1354209238afSKris Buschelman /*MC
1355002d173eSKris Buschelman    MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices.
1356209238afSKris Buschelman 
1357209238afSKris Buschelman    This matrix type is identical to MATSEQDENSE when constructed with a single process communicator,
1358209238afSKris Buschelman    and MATMPIDENSE otherwise.
1359209238afSKris Buschelman 
1360209238afSKris Buschelman    Options Database Keys:
1361209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions()
1362209238afSKris Buschelman 
1363209238afSKris Buschelman   Level: beginner
1364209238afSKris Buschelman 
136501b82886SBarry Smith 
1366209238afSKris Buschelman .seealso: MatCreateMPIDense,MATSEQDENSE,MATMPIDENSE
1367209238afSKris Buschelman M*/
1368209238afSKris Buschelman 
13694a2ae208SSatish Balay #undef __FUNCT__
13704a2ae208SSatish Balay #define __FUNCT__ "MatMPIDenseSetPreallocation"
1371273d9f13SBarry Smith /*@C
1372273d9f13SBarry Smith    MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries
1373273d9f13SBarry Smith 
1374273d9f13SBarry Smith    Not collective
1375273d9f13SBarry Smith 
1376273d9f13SBarry Smith    Input Parameters:
13771c4f3114SJed Brown .  B - the matrix
13780298fd71SBarry Smith -  data - optional location of matrix data.  Set data=NULL for PETSc
1379273d9f13SBarry Smith    to control all matrix memory allocation.
1380273d9f13SBarry Smith 
1381273d9f13SBarry Smith    Notes:
1382273d9f13SBarry Smith    The dense format is fully compatible with standard Fortran 77
1383273d9f13SBarry Smith    storage by columns.
1384273d9f13SBarry Smith 
1385273d9f13SBarry Smith    The data input variable is intended primarily for Fortran programmers
1386273d9f13SBarry Smith    who wish to allocate their own matrix memory space.  Most users should
13870298fd71SBarry Smith    set data=NULL.
1388273d9f13SBarry Smith 
1389273d9f13SBarry Smith    Level: intermediate
1390273d9f13SBarry Smith 
1391273d9f13SBarry Smith .keywords: matrix,dense, parallel
1392273d9f13SBarry Smith 
1393273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues()
1394273d9f13SBarry Smith @*/
13951c4f3114SJed Brown PetscErrorCode  MatMPIDenseSetPreallocation(Mat B,PetscScalar *data)
1396273d9f13SBarry Smith {
13974ac538c5SBarry Smith   PetscErrorCode ierr;
1398273d9f13SBarry Smith 
1399273d9f13SBarry Smith   PetscFunctionBegin;
14001c4f3114SJed Brown   ierr = PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data));CHKERRQ(ierr);
1401273d9f13SBarry Smith   PetscFunctionReturn(0);
1402273d9f13SBarry Smith }
1403273d9f13SBarry Smith 
14044a2ae208SSatish Balay #undef __FUNCT__
140569b1f4b7SBarry Smith #define __FUNCT__ "MatCreateDense"
14068965ea79SLois Curfman McInnes /*@C
140769b1f4b7SBarry Smith    MatCreateDense - Creates a parallel matrix in dense format.
14088965ea79SLois Curfman McInnes 
1409db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
1410db81eaa0SLois Curfman McInnes 
14118965ea79SLois Curfman McInnes    Input Parameters:
1412db81eaa0SLois Curfman McInnes +  comm - MPI communicator
14138965ea79SLois Curfman McInnes .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1414db81eaa0SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
14158965ea79SLois Curfman McInnes .  M - number of global rows (or PETSC_DECIDE to have calculated if m is given)
1416db81eaa0SLois Curfman McInnes .  N - number of global columns (or PETSC_DECIDE to have calculated if n is given)
14170298fd71SBarry Smith -  data - optional location of matrix data.  Set data=NULL (NULL_SCALAR for Fortran users) for PETSc
1418dfc5480cSLois Curfman McInnes    to control all matrix memory allocation.
14198965ea79SLois Curfman McInnes 
14208965ea79SLois Curfman McInnes    Output Parameter:
1421477f1c0bSLois Curfman McInnes .  A - the matrix
14228965ea79SLois Curfman McInnes 
1423b259b22eSLois Curfman McInnes    Notes:
142439ddd567SLois Curfman McInnes    The dense format is fully compatible with standard Fortran 77
142539ddd567SLois Curfman McInnes    storage by columns.
14268965ea79SLois Curfman McInnes 
142718f449edSLois Curfman McInnes    The data input variable is intended primarily for Fortran programmers
142818f449edSLois Curfman McInnes    who wish to allocate their own matrix memory space.  Most users should
14290298fd71SBarry Smith    set data=NULL (NULL_SCALAR for Fortran users).
143018f449edSLois Curfman McInnes 
14318965ea79SLois Curfman McInnes    The user MUST specify either the local or global matrix dimensions
14328965ea79SLois Curfman McInnes    (possibly both).
14338965ea79SLois Curfman McInnes 
1434027ccd11SLois Curfman McInnes    Level: intermediate
1435027ccd11SLois Curfman McInnes 
143639ddd567SLois Curfman McInnes .keywords: matrix,dense, parallel
14378965ea79SLois Curfman McInnes 
143839ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues()
14398965ea79SLois Curfman McInnes @*/
144069b1f4b7SBarry Smith PetscErrorCode  MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A)
14418965ea79SLois Curfman McInnes {
14426849ba73SBarry Smith   PetscErrorCode ierr;
144313f74950SBarry Smith   PetscMPIInt    size;
14448965ea79SLois Curfman McInnes 
14453a40ed3dSBarry Smith   PetscFunctionBegin;
1446f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
1447f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
1448273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1449273d9f13SBarry Smith   if (size > 1) {
1450273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr);
1451273d9f13SBarry Smith     ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr);
1452273d9f13SBarry Smith   } else {
1453273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr);
1454273d9f13SBarry Smith     ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr);
14558c469469SLois Curfman McInnes   }
14563a40ed3dSBarry Smith   PetscFunctionReturn(0);
14578965ea79SLois Curfman McInnes }
14588965ea79SLois Curfman McInnes 
14594a2ae208SSatish Balay #undef __FUNCT__
14604a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIDense"
14616849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat)
14628965ea79SLois Curfman McInnes {
14638965ea79SLois Curfman McInnes   Mat            mat;
14643501a2bdSLois Curfman McInnes   Mat_MPIDense   *a,*oldmat = (Mat_MPIDense*)A->data;
1465dfbe8321SBarry Smith   PetscErrorCode ierr;
14668965ea79SLois Curfman McInnes 
14673a40ed3dSBarry Smith   PetscFunctionBegin;
14688965ea79SLois Curfman McInnes   *newmat = 0;
1469ce94432eSBarry Smith   ierr    = MatCreate(PetscObjectComm((PetscObject)A),&mat);CHKERRQ(ierr);
1470d0f46423SBarry Smith   ierr    = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
14717adad957SLisandro Dalcin   ierr    = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr);
1472834f8fabSBarry Smith   a       = (Mat_MPIDense*)mat->data;
1473e04c1aa4SHong Zhang   ierr    = PetscMemcpy(mat->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
14745aa7edbeSHong Zhang 
1475d5f3da31SBarry Smith   mat->factortype   = A->factortype;
1476c456f294SBarry Smith   mat->assembled    = PETSC_TRUE;
1477273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
14788965ea79SLois Curfman McInnes 
14798965ea79SLois Curfman McInnes   a->size         = oldmat->size;
14808965ea79SLois Curfman McInnes   a->rank         = oldmat->rank;
1481e0fa3b82SLois Curfman McInnes   mat->insertmode = NOT_SET_VALUES;
1482b9b97703SBarry Smith   a->nvec         = oldmat->nvec;
14833782ba37SSatish Balay   a->donotstash   = oldmat->donotstash;
1484e04c1aa4SHong Zhang 
14851e1e43feSBarry Smith   ierr = PetscLayoutReference(A->rmap,&mat->rmap);CHKERRQ(ierr);
14861e1e43feSBarry Smith   ierr = PetscLayoutReference(A->cmap,&mat->cmap);CHKERRQ(ierr);
14878965ea79SLois Curfman McInnes 
1488329f5518SBarry Smith   ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr);
14895609ef8eSBarry Smith   ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
14903bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
149101b82886SBarry Smith 
14928965ea79SLois Curfman McInnes   *newmat = mat;
14933a40ed3dSBarry Smith   PetscFunctionReturn(0);
14948965ea79SLois Curfman McInnes }
14958965ea79SLois Curfman McInnes 
14964a2ae208SSatish Balay #undef __FUNCT__
14975bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPIDense_DenseInFile"
14985bba2384SShri Abhyankar PetscErrorCode MatLoad_MPIDense_DenseInFile(MPI_Comm comm,PetscInt fd,PetscInt M,PetscInt N,Mat newmat,PetscInt sizesset)
149986d161a7SShri Abhyankar {
150086d161a7SShri Abhyankar   PetscErrorCode ierr;
150186d161a7SShri Abhyankar   PetscMPIInt    rank,size;
150286d161a7SShri Abhyankar   PetscInt       *rowners,i,m,nz,j;
150386d161a7SShri Abhyankar   PetscScalar    *array,*vals,*vals_ptr;
150486d161a7SShri Abhyankar 
150586d161a7SShri Abhyankar   PetscFunctionBegin;
150686d161a7SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
150786d161a7SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
150886d161a7SShri Abhyankar 
150986d161a7SShri Abhyankar   /* determine ownership of all rows */
151086d161a7SShri Abhyankar   if (newmat->rmap->n < 0) m = M/size + ((M % size) > rank);
151186d161a7SShri Abhyankar   else m = newmat->rmap->n;
1512854ce69bSBarry Smith   ierr       = PetscMalloc1(size+2,&rowners);CHKERRQ(ierr);
151386d161a7SShri Abhyankar   ierr       = MPI_Allgather(&m,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr);
151486d161a7SShri Abhyankar   rowners[0] = 0;
151586d161a7SShri Abhyankar   for (i=2; i<=size; i++) {
151686d161a7SShri Abhyankar     rowners[i] += rowners[i-1];
151786d161a7SShri Abhyankar   }
151886d161a7SShri Abhyankar 
151986d161a7SShri Abhyankar   if (!sizesset) {
152086d161a7SShri Abhyankar     ierr = MatSetSizes(newmat,m,PETSC_DECIDE,M,N);CHKERRQ(ierr);
152186d161a7SShri Abhyankar   }
15220298fd71SBarry Smith   ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr);
15238c778c55SBarry Smith   ierr = MatDenseGetArray(newmat,&array);CHKERRQ(ierr);
152486d161a7SShri Abhyankar 
152586d161a7SShri Abhyankar   if (!rank) {
1526785e854fSJed Brown     ierr = PetscMalloc1(m*N,&vals);CHKERRQ(ierr);
152786d161a7SShri Abhyankar 
152886d161a7SShri Abhyankar     /* read in my part of the matrix numerical values  */
152986d161a7SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,m*N,PETSC_SCALAR);CHKERRQ(ierr);
153086d161a7SShri Abhyankar 
153186d161a7SShri Abhyankar     /* insert into matrix-by row (this is why cannot directly read into array */
153286d161a7SShri Abhyankar     vals_ptr = vals;
153386d161a7SShri Abhyankar     for (i=0; i<m; i++) {
153486d161a7SShri Abhyankar       for (j=0; j<N; j++) {
153586d161a7SShri Abhyankar         array[i + j*m] = *vals_ptr++;
153686d161a7SShri Abhyankar       }
153786d161a7SShri Abhyankar     }
153886d161a7SShri Abhyankar 
153986d161a7SShri Abhyankar     /* read in other processors and ship out */
154086d161a7SShri Abhyankar     for (i=1; i<size; i++) {
154186d161a7SShri Abhyankar       nz   = (rowners[i+1] - rowners[i])*N;
154286d161a7SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
1543a25532f0SBarry Smith       ierr = MPIULong_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)(newmat))->tag,comm);CHKERRQ(ierr);
154486d161a7SShri Abhyankar     }
154586d161a7SShri Abhyankar   } else {
154686d161a7SShri Abhyankar     /* receive numeric values */
1547785e854fSJed Brown     ierr = PetscMalloc1(m*N,&vals);CHKERRQ(ierr);
154886d161a7SShri Abhyankar 
154986d161a7SShri Abhyankar     /* receive message of values*/
1550a25532f0SBarry Smith     ierr = MPIULong_Recv(vals,m*N,MPIU_SCALAR,0,((PetscObject)(newmat))->tag,comm);CHKERRQ(ierr);
155186d161a7SShri Abhyankar 
155286d161a7SShri Abhyankar     /* insert into matrix-by row (this is why cannot directly read into array */
155386d161a7SShri Abhyankar     vals_ptr = vals;
155486d161a7SShri Abhyankar     for (i=0; i<m; i++) {
155586d161a7SShri Abhyankar       for (j=0; j<N; j++) {
155686d161a7SShri Abhyankar         array[i + j*m] = *vals_ptr++;
155786d161a7SShri Abhyankar       }
155886d161a7SShri Abhyankar     }
155986d161a7SShri Abhyankar   }
15608c778c55SBarry Smith   ierr = MatDenseRestoreArray(newmat,&array);CHKERRQ(ierr);
156186d161a7SShri Abhyankar   ierr = PetscFree(rowners);CHKERRQ(ierr);
156286d161a7SShri Abhyankar   ierr = PetscFree(vals);CHKERRQ(ierr);
156386d161a7SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
156486d161a7SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
156586d161a7SShri Abhyankar   PetscFunctionReturn(0);
156686d161a7SShri Abhyankar }
156786d161a7SShri Abhyankar 
156886d161a7SShri Abhyankar #undef __FUNCT__
15695bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPIDense"
1570112444f4SShri Abhyankar PetscErrorCode MatLoad_MPIDense(Mat newmat,PetscViewer viewer)
157186d161a7SShri Abhyankar {
1572dfdea288SBarry Smith   Mat_MPIDense   *a;
157386d161a7SShri Abhyankar   PetscScalar    *vals,*svals;
1574ce94432eSBarry Smith   MPI_Comm       comm;
157586d161a7SShri Abhyankar   MPI_Status     status;
157686d161a7SShri Abhyankar   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*rowners,*sndcounts,m,maxnz;
157786d161a7SShri Abhyankar   PetscInt       header[4],*rowlengths = 0,M,N,*cols;
157886d161a7SShri Abhyankar   PetscInt       *ourlens,*procsnz = 0,*offlens,jj,*mycols,*smycols;
157986d161a7SShri Abhyankar   PetscInt       i,nz,j,rstart,rend,sizesset=1,grows,gcols;
158086d161a7SShri Abhyankar   int            fd;
158186d161a7SShri Abhyankar   PetscErrorCode ierr;
158286d161a7SShri Abhyankar 
158386d161a7SShri Abhyankar   PetscFunctionBegin;
1584c98fd787SBarry Smith   /* force binary viewer to load .info file if it has not yet done so */
1585c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
1586ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
158786d161a7SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
158886d161a7SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
158986d161a7SShri Abhyankar   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
15905872f025SBarry Smith   if (!rank) {
159186d161a7SShri Abhyankar     ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr);
159286d161a7SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
159386d161a7SShri Abhyankar   }
159486d161a7SShri Abhyankar   if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0;
159586d161a7SShri Abhyankar 
159686d161a7SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
159786d161a7SShri Abhyankar   M    = header[1]; N = header[2]; nz = header[3];
159886d161a7SShri Abhyankar 
159986d161a7SShri Abhyankar   /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */
160086d161a7SShri Abhyankar   if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M;
160186d161a7SShri Abhyankar   if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N;
160286d161a7SShri Abhyankar 
160386d161a7SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
160486d161a7SShri Abhyankar   if (sizesset) {
160586d161a7SShri Abhyankar     ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr);
160686d161a7SShri Abhyankar   }
1607abd38a8fSBarry Smith   if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows);
1608abd38a8fSBarry Smith   if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols);
160986d161a7SShri Abhyankar 
161086d161a7SShri Abhyankar   /*
161186d161a7SShri Abhyankar        Handle case where matrix is stored on disk as a dense matrix
161286d161a7SShri Abhyankar   */
161386d161a7SShri Abhyankar   if (nz == MATRIX_BINARY_FORMAT_DENSE) {
16145bba2384SShri Abhyankar     ierr = MatLoad_MPIDense_DenseInFile(comm,fd,M,N,newmat,sizesset);CHKERRQ(ierr);
161586d161a7SShri Abhyankar     PetscFunctionReturn(0);
161686d161a7SShri Abhyankar   }
161786d161a7SShri Abhyankar 
161886d161a7SShri Abhyankar   /* determine ownership of all rows */
16192205254eSKarl Rupp   if (newmat->rmap->n < 0) {
16202205254eSKarl Rupp     ierr = PetscMPIIntCast(M/size + ((M % size) > rank),&m);CHKERRQ(ierr);
16212205254eSKarl Rupp   } else {
16222205254eSKarl Rupp     ierr = PetscMPIIntCast(newmat->rmap->n,&m);CHKERRQ(ierr);
16232205254eSKarl Rupp   }
1624854ce69bSBarry Smith   ierr       = PetscMalloc1(size+2,&rowners);CHKERRQ(ierr);
162586d161a7SShri Abhyankar   ierr       = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
162686d161a7SShri Abhyankar   rowners[0] = 0;
162786d161a7SShri Abhyankar   for (i=2; i<=size; i++) {
162886d161a7SShri Abhyankar     rowners[i] += rowners[i-1];
162986d161a7SShri Abhyankar   }
163086d161a7SShri Abhyankar   rstart = rowners[rank];
163186d161a7SShri Abhyankar   rend   = rowners[rank+1];
163286d161a7SShri Abhyankar 
163386d161a7SShri Abhyankar   /* distribute row lengths to all processors */
1634dcca6d9dSJed Brown   ierr = PetscMalloc2(rend-rstart,&ourlens,rend-rstart,&offlens);CHKERRQ(ierr);
163586d161a7SShri Abhyankar   if (!rank) {
1636785e854fSJed Brown     ierr = PetscMalloc1(M,&rowlengths);CHKERRQ(ierr);
163786d161a7SShri Abhyankar     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
1638785e854fSJed Brown     ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr);
163986d161a7SShri Abhyankar     for (i=0; i<size; i++) sndcounts[i] = rowners[i+1] - rowners[i];
164086d161a7SShri Abhyankar     ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr);
164186d161a7SShri Abhyankar     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
164286d161a7SShri Abhyankar   } else {
164386d161a7SShri Abhyankar     ierr = MPI_Scatterv(0,0,0,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr);
164486d161a7SShri Abhyankar   }
164586d161a7SShri Abhyankar 
164686d161a7SShri Abhyankar   if (!rank) {
164786d161a7SShri Abhyankar     /* calculate the number of nonzeros on each processor */
1648785e854fSJed Brown     ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr);
164986d161a7SShri Abhyankar     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
165086d161a7SShri Abhyankar     for (i=0; i<size; i++) {
165186d161a7SShri Abhyankar       for (j=rowners[i]; j< rowners[i+1]; j++) {
165286d161a7SShri Abhyankar         procsnz[i] += rowlengths[j];
165386d161a7SShri Abhyankar       }
165486d161a7SShri Abhyankar     }
165586d161a7SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
165686d161a7SShri Abhyankar 
165786d161a7SShri Abhyankar     /* determine max buffer needed and allocate it */
165886d161a7SShri Abhyankar     maxnz = 0;
165986d161a7SShri Abhyankar     for (i=0; i<size; i++) {
166086d161a7SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
166186d161a7SShri Abhyankar     }
1662785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr);
166386d161a7SShri Abhyankar 
166486d161a7SShri Abhyankar     /* read in my part of the matrix column indices  */
166586d161a7SShri Abhyankar     nz   = procsnz[0];
1666785e854fSJed Brown     ierr = PetscMalloc1(nz,&mycols);CHKERRQ(ierr);
166786d161a7SShri Abhyankar     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
166886d161a7SShri Abhyankar 
166986d161a7SShri Abhyankar     /* read in every one elses and ship off */
167086d161a7SShri Abhyankar     for (i=1; i<size; i++) {
167186d161a7SShri Abhyankar       nz   = procsnz[i];
167286d161a7SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
167386d161a7SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
167486d161a7SShri Abhyankar     }
167586d161a7SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
167686d161a7SShri Abhyankar   } else {
167786d161a7SShri Abhyankar     /* determine buffer space needed for message */
167886d161a7SShri Abhyankar     nz = 0;
167986d161a7SShri Abhyankar     for (i=0; i<m; i++) {
168086d161a7SShri Abhyankar       nz += ourlens[i];
168186d161a7SShri Abhyankar     }
1682854ce69bSBarry Smith     ierr = PetscMalloc1(nz+1,&mycols);CHKERRQ(ierr);
168386d161a7SShri Abhyankar 
168486d161a7SShri Abhyankar     /* receive message of column indices*/
168586d161a7SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
168686d161a7SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
168786d161a7SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
168886d161a7SShri Abhyankar   }
168986d161a7SShri Abhyankar 
169086d161a7SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
169186d161a7SShri Abhyankar   ierr = PetscMemzero(offlens,m*sizeof(PetscInt));CHKERRQ(ierr);
169286d161a7SShri Abhyankar   jj   = 0;
169386d161a7SShri Abhyankar   for (i=0; i<m; i++) {
169486d161a7SShri Abhyankar     for (j=0; j<ourlens[i]; j++) {
169586d161a7SShri Abhyankar       if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++;
169686d161a7SShri Abhyankar       jj++;
169786d161a7SShri Abhyankar     }
169886d161a7SShri Abhyankar   }
169986d161a7SShri Abhyankar 
170086d161a7SShri Abhyankar   /* create our matrix */
17012205254eSKarl Rupp   for (i=0; i<m; i++) ourlens[i] -= offlens[i];
170286d161a7SShri Abhyankar 
170386d161a7SShri Abhyankar   if (!sizesset) {
170486d161a7SShri Abhyankar     ierr = MatSetSizes(newmat,m,PETSC_DECIDE,M,N);CHKERRQ(ierr);
170586d161a7SShri Abhyankar   }
1706dfdea288SBarry Smith   a = (Mat_MPIDense*)newmat->data;
1707*2e3566b0SBarry Smith   if (!a->A || !((Mat_SeqDense*)(a->A->data))->user_alloc) {
17080298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr);
1709dfdea288SBarry Smith   }
17102205254eSKarl Rupp   for (i=0; i<m; i++) ourlens[i] += offlens[i];
171186d161a7SShri Abhyankar 
171286d161a7SShri Abhyankar   if (!rank) {
1713785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&vals);CHKERRQ(ierr);
171486d161a7SShri Abhyankar 
171586d161a7SShri Abhyankar     /* read in my part of the matrix numerical values  */
171686d161a7SShri Abhyankar     nz   = procsnz[0];
171786d161a7SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
171886d161a7SShri Abhyankar 
171986d161a7SShri Abhyankar     /* insert into matrix */
172086d161a7SShri Abhyankar     jj      = rstart;
172186d161a7SShri Abhyankar     smycols = mycols;
172286d161a7SShri Abhyankar     svals   = vals;
172386d161a7SShri Abhyankar     for (i=0; i<m; i++) {
172486d161a7SShri Abhyankar       ierr     = MatSetValues(newmat,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
172586d161a7SShri Abhyankar       smycols += ourlens[i];
172686d161a7SShri Abhyankar       svals   += ourlens[i];
172786d161a7SShri Abhyankar       jj++;
172886d161a7SShri Abhyankar     }
172986d161a7SShri Abhyankar 
173086d161a7SShri Abhyankar     /* read in other processors and ship out */
173186d161a7SShri Abhyankar     for (i=1; i<size; i++) {
173286d161a7SShri Abhyankar       nz   = procsnz[i];
173386d161a7SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
173486d161a7SShri Abhyankar       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
173586d161a7SShri Abhyankar     }
173686d161a7SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
173786d161a7SShri Abhyankar   } else {
173886d161a7SShri Abhyankar     /* receive numeric values */
1739854ce69bSBarry Smith     ierr = PetscMalloc1(nz+1,&vals);CHKERRQ(ierr);
174086d161a7SShri Abhyankar 
174186d161a7SShri Abhyankar     /* receive message of values*/
174286d161a7SShri Abhyankar     ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr);
174386d161a7SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
174486d161a7SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
174586d161a7SShri Abhyankar 
174686d161a7SShri Abhyankar     /* insert into matrix */
174786d161a7SShri Abhyankar     jj      = rstart;
174886d161a7SShri Abhyankar     smycols = mycols;
174986d161a7SShri Abhyankar     svals   = vals;
175086d161a7SShri Abhyankar     for (i=0; i<m; i++) {
175186d161a7SShri Abhyankar       ierr     = MatSetValues(newmat,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
175286d161a7SShri Abhyankar       smycols += ourlens[i];
175386d161a7SShri Abhyankar       svals   += ourlens[i];
175486d161a7SShri Abhyankar       jj++;
175586d161a7SShri Abhyankar     }
175686d161a7SShri Abhyankar   }
175786d161a7SShri Abhyankar   ierr = PetscFree2(ourlens,offlens);CHKERRQ(ierr);
175886d161a7SShri Abhyankar   ierr = PetscFree(vals);CHKERRQ(ierr);
175986d161a7SShri Abhyankar   ierr = PetscFree(mycols);CHKERRQ(ierr);
176086d161a7SShri Abhyankar   ierr = PetscFree(rowners);CHKERRQ(ierr);
176186d161a7SShri Abhyankar 
176286d161a7SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
176386d161a7SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
176486d161a7SShri Abhyankar   PetscFunctionReturn(0);
176586d161a7SShri Abhyankar }
176686d161a7SShri Abhyankar 
176786d161a7SShri Abhyankar #undef __FUNCT__
17686e4ee0c6SHong Zhang #define __FUNCT__ "MatEqual_MPIDense"
1769ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool  *flag)
17706e4ee0c6SHong Zhang {
17716e4ee0c6SHong Zhang   Mat_MPIDense   *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data;
17726e4ee0c6SHong Zhang   Mat            a,b;
1773ace3abfcSBarry Smith   PetscBool      flg;
17746e4ee0c6SHong Zhang   PetscErrorCode ierr;
177590ace30eSBarry Smith 
17766e4ee0c6SHong Zhang   PetscFunctionBegin;
17776e4ee0c6SHong Zhang   a    = matA->A;
17786e4ee0c6SHong Zhang   b    = matB->A;
17796e4ee0c6SHong Zhang   ierr = MatEqual(a,b,&flg);CHKERRQ(ierr);
1780ce94432eSBarry Smith   ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
17816e4ee0c6SHong Zhang   PetscFunctionReturn(0);
17826e4ee0c6SHong Zhang }
178390ace30eSBarry Smith 
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