1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 4ed3cc1f0SBarry Smith */ 5ed3cc1f0SBarry Smith 604fea9ffSBarry Smith 7c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 88949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 98965ea79SLois Curfman McInnes 10ba8c8a56SBarry Smith #undef __FUNCT__ 11ab92ecdeSBarry Smith #define __FUNCT__ "MatDenseGetLocalMatrix" 12ab92ecdeSBarry Smith /*@ 13ab92ecdeSBarry Smith 14ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 15ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 16ab92ecdeSBarry Smith 17ab92ecdeSBarry Smith Input Parameter: 18ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 19ab92ecdeSBarry Smith 20ab92ecdeSBarry Smith Output Parameter: 21ab92ecdeSBarry Smith . B - the inner matrix 22ab92ecdeSBarry Smith 238e6c10adSSatish Balay Level: intermediate 248e6c10adSSatish Balay 25ab92ecdeSBarry Smith @*/ 26ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 27ab92ecdeSBarry Smith { 28ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 29ab92ecdeSBarry Smith PetscErrorCode ierr; 30ace3abfcSBarry Smith PetscBool flg; 31ab92ecdeSBarry Smith 32ab92ecdeSBarry Smith PetscFunctionBegin; 33251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr); 342205254eSKarl Rupp if (flg) *B = mat->A; 352205254eSKarl Rupp else *B = A; 36ab92ecdeSBarry Smith PetscFunctionReturn(0); 37ab92ecdeSBarry Smith } 38ab92ecdeSBarry Smith 39ab92ecdeSBarry Smith #undef __FUNCT__ 40ba8c8a56SBarry Smith #define __FUNCT__ "MatGetRow_MPIDense" 41ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 42ba8c8a56SBarry Smith { 43ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 44ba8c8a56SBarry Smith PetscErrorCode ierr; 45d0f46423SBarry Smith PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 46ba8c8a56SBarry Smith 47ba8c8a56SBarry Smith PetscFunctionBegin; 48e7e72b3dSBarry Smith if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 49ba8c8a56SBarry Smith lrow = row - rstart; 50ba8c8a56SBarry Smith ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr); 51ba8c8a56SBarry Smith PetscFunctionReturn(0); 52ba8c8a56SBarry Smith } 53ba8c8a56SBarry Smith 54ba8c8a56SBarry Smith #undef __FUNCT__ 55ba8c8a56SBarry Smith #define __FUNCT__ "MatRestoreRow_MPIDense" 56ba8c8a56SBarry Smith PetscErrorCode MatRestoreRow_MPIDense(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 57ba8c8a56SBarry Smith { 58ba8c8a56SBarry Smith PetscErrorCode ierr; 59ba8c8a56SBarry Smith 60ba8c8a56SBarry Smith PetscFunctionBegin; 61ba8c8a56SBarry Smith if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);} 62ba8c8a56SBarry Smith if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);} 63ba8c8a56SBarry Smith PetscFunctionReturn(0); 64ba8c8a56SBarry Smith } 65ba8c8a56SBarry Smith 664a2ae208SSatish Balay #undef __FUNCT__ 674a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIDense" 6811bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A,Mat *a) 690de54da6SSatish Balay { 700de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 716849ba73SBarry Smith PetscErrorCode ierr; 72d0f46423SBarry Smith PetscInt m = A->rmap->n,rstart = A->rmap->rstart; 7387828ca2SBarry Smith PetscScalar *array; 740de54da6SSatish Balay MPI_Comm comm; 7511bd1e4dSLisandro Dalcin Mat B; 760de54da6SSatish Balay 770de54da6SSatish Balay PetscFunctionBegin; 78e32f2f54SBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported."); 790de54da6SSatish Balay 8011bd1e4dSLisandro Dalcin ierr = PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B);CHKERRQ(ierr); 8111bd1e4dSLisandro Dalcin if (!B) { 820de54da6SSatish Balay ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr); 8311bd1e4dSLisandro Dalcin ierr = MatCreate(comm,&B);CHKERRQ(ierr); 8411bd1e4dSLisandro Dalcin ierr = MatSetSizes(B,m,m,m,m);CHKERRQ(ierr); 8511bd1e4dSLisandro Dalcin ierr = MatSetType(B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr); 868c778c55SBarry Smith ierr = MatDenseGetArray(mdn->A,&array);CHKERRQ(ierr); 8711bd1e4dSLisandro Dalcin ierr = MatSeqDenseSetPreallocation(B,array+m*rstart);CHKERRQ(ierr); 888c778c55SBarry Smith ierr = MatDenseRestoreArray(mdn->A,&array);CHKERRQ(ierr); 8911bd1e4dSLisandro Dalcin ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9011bd1e4dSLisandro Dalcin ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9111bd1e4dSLisandro Dalcin ierr = PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B);CHKERRQ(ierr); 9211bd1e4dSLisandro Dalcin *a = B; 9311bd1e4dSLisandro Dalcin ierr = MatDestroy(&B);CHKERRQ(ierr); 942205254eSKarl Rupp } else *a = B; 950de54da6SSatish Balay PetscFunctionReturn(0); 960de54da6SSatish Balay } 970de54da6SSatish Balay 984a2ae208SSatish Balay #undef __FUNCT__ 994a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIDense" 10013f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 1018965ea79SLois Curfman McInnes { 10239b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 103dfbe8321SBarry Smith PetscErrorCode ierr; 104d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 105ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 1068965ea79SLois Curfman McInnes 1073a40ed3dSBarry Smith PetscFunctionBegin; 1088965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1095ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 110e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1118965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1128965ea79SLois Curfman McInnes row = idxm[i] - rstart; 11339b7565bSBarry Smith if (roworiented) { 11439b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr); 1153a40ed3dSBarry Smith } else { 1168965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1175ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 118e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 11939b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr); 12039b7565bSBarry Smith } 1218965ea79SLois Curfman McInnes } 1222205254eSKarl Rupp } else if (!A->donotstash) { 1235080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 12439b7565bSBarry Smith if (roworiented) { 125b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 126d36fbae8SSatish Balay } else { 127b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 12839b7565bSBarry Smith } 129b49de8d1SLois Curfman McInnes } 130b49de8d1SLois Curfman McInnes } 1313a40ed3dSBarry Smith PetscFunctionReturn(0); 132b49de8d1SLois Curfman McInnes } 133b49de8d1SLois Curfman McInnes 1344a2ae208SSatish Balay #undef __FUNCT__ 1354a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIDense" 13613f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 137b49de8d1SLois Curfman McInnes { 138b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 139dfbe8321SBarry Smith PetscErrorCode ierr; 140d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 141b49de8d1SLois Curfman McInnes 1423a40ed3dSBarry Smith PetscFunctionBegin; 143b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 144e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */ 145e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 146b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 147b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 148b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 149e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */ 150e7e72b3dSBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 151b49de8d1SLois Curfman McInnes ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr); 152b49de8d1SLois Curfman McInnes } 153e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 1548965ea79SLois Curfman McInnes } 1553a40ed3dSBarry Smith PetscFunctionReturn(0); 1568965ea79SLois Curfman McInnes } 1578965ea79SLois Curfman McInnes 1584a2ae208SSatish Balay #undef __FUNCT__ 1598c778c55SBarry Smith #define __FUNCT__ "MatDenseGetArray_MPIDense" 1608c778c55SBarry Smith PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar *array[]) 161ff14e315SSatish Balay { 162ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 163dfbe8321SBarry Smith PetscErrorCode ierr; 164ff14e315SSatish Balay 1653a40ed3dSBarry Smith PetscFunctionBegin; 1668c778c55SBarry Smith ierr = MatDenseGetArray(a->A,array);CHKERRQ(ierr); 1673a40ed3dSBarry Smith PetscFunctionReturn(0); 168ff14e315SSatish Balay } 169ff14e315SSatish Balay 1704a2ae208SSatish Balay #undef __FUNCT__ 1714a2ae208SSatish Balay #define __FUNCT__ "MatGetSubMatrix_MPIDense" 1724aa3045dSJed Brown static PetscErrorCode MatGetSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B) 173ca3fa75bSLois Curfman McInnes { 174ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 175ca3fa75bSLois Curfman McInnes Mat_SeqDense *lmat = (Mat_SeqDense*)mat->A->data; 1766849ba73SBarry Smith PetscErrorCode ierr; 1774aa3045dSJed Brown PetscInt i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols; 1785d0c19d7SBarry Smith const PetscInt *irow,*icol; 17987828ca2SBarry Smith PetscScalar *av,*bv,*v = lmat->v; 180ca3fa75bSLois Curfman McInnes Mat newmat; 1814aa3045dSJed Brown IS iscol_local; 182ca3fa75bSLois Curfman McInnes 183ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 1844aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 185ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 1864aa3045dSJed Brown ierr = ISGetIndices(iscol_local,&icol);CHKERRQ(ierr); 187b9b97703SBarry Smith ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 188b9b97703SBarry Smith ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 1894aa3045dSJed Brown ierr = ISGetSize(iscol,&Ncols);CHKERRQ(ierr); /* global number of columns, size of iscol_local */ 190ca3fa75bSLois Curfman McInnes 191ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 1927eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 1937eba5e9cSLois Curfman McInnes original matrix! */ 194ca3fa75bSLois Curfman McInnes 195ca3fa75bSLois Curfman McInnes ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr); 1967eba5e9cSLois Curfman McInnes ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 197ca3fa75bSLois Curfman McInnes 198ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 199ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 200e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 2017eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 202ca3fa75bSLois Curfman McInnes newmat = *B; 203ca3fa75bSLois Curfman McInnes } else { 204ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 205ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr); 2064aa3045dSJed Brown ierr = MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols);CHKERRQ(ierr); 2077adad957SLisandro Dalcin ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 2080298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 209ca3fa75bSLois Curfman McInnes } 210ca3fa75bSLois Curfman McInnes 211ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 212ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 213ca3fa75bSLois Curfman McInnes bv = ((Mat_SeqDense*)newmatd->A->data)->v; 214ca3fa75bSLois Curfman McInnes 2154aa3045dSJed Brown for (i=0; i<Ncols; i++) { 21625a33276SHong Zhang av = v + ((Mat_SeqDense*)mat->A->data)->lda*icol[i]; 217ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 2187eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 219ca3fa75bSLois Curfman McInnes } 220ca3fa75bSLois Curfman McInnes } 221ca3fa75bSLois Curfman McInnes 222ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 223ca3fa75bSLois Curfman McInnes ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 224ca3fa75bSLois Curfman McInnes ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 225ca3fa75bSLois Curfman McInnes 226ca3fa75bSLois Curfman McInnes /* Free work space */ 227ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 2285bdf786aSShri Abhyankar ierr = ISRestoreIndices(iscol_local,&icol);CHKERRQ(ierr); 22932bb1f2dSLisandro Dalcin ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 230ca3fa75bSLois Curfman McInnes *B = newmat; 231ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 232ca3fa75bSLois Curfman McInnes } 233ca3fa75bSLois Curfman McInnes 2344a2ae208SSatish Balay #undef __FUNCT__ 2358c778c55SBarry Smith #define __FUNCT__ "MatDenseRestoreArray_MPIDense" 2368c778c55SBarry Smith PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar *array[]) 237ff14e315SSatish Balay { 23873a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 23973a71a0fSBarry Smith PetscErrorCode ierr; 24073a71a0fSBarry Smith 2413a40ed3dSBarry Smith PetscFunctionBegin; 2428c778c55SBarry Smith ierr = MatDenseRestoreArray(a->A,array);CHKERRQ(ierr); 2433a40ed3dSBarry Smith PetscFunctionReturn(0); 244ff14e315SSatish Balay } 245ff14e315SSatish Balay 2464a2ae208SSatish Balay #undef __FUNCT__ 2474a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIDense" 248dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 2498965ea79SLois Curfman McInnes { 25039ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 251ce94432eSBarry Smith MPI_Comm comm; 252dfbe8321SBarry Smith PetscErrorCode ierr; 25313f74950SBarry Smith PetscInt nstash,reallocs; 2548965ea79SLois Curfman McInnes InsertMode addv; 2558965ea79SLois Curfman McInnes 2563a40ed3dSBarry Smith PetscFunctionBegin; 257ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr); 2588965ea79SLois Curfman McInnes /* make sure all processors are either in INSERTMODE or ADDMODE */ 259c3aae356SJed Brown ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,comm);CHKERRQ(ierr); 260ce94432eSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Cannot mix adds/inserts on different procs"); 261e0fa3b82SLois Curfman McInnes mat->insertmode = addv; /* in case this processor had no cache */ 2628965ea79SLois Curfman McInnes 263d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 2648798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 265ae15b995SBarry Smith ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 2663a40ed3dSBarry Smith PetscFunctionReturn(0); 2678965ea79SLois Curfman McInnes } 2688965ea79SLois Curfman McInnes 2694a2ae208SSatish Balay #undef __FUNCT__ 2704a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIDense" 271dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 2728965ea79SLois Curfman McInnes { 27339ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 2746849ba73SBarry Smith PetscErrorCode ierr; 27513f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 27613f74950SBarry Smith PetscMPIInt n; 27787828ca2SBarry Smith PetscScalar *val; 278e0fa3b82SLois Curfman McInnes InsertMode addv=mat->insertmode; 2798965ea79SLois Curfman McInnes 2803a40ed3dSBarry Smith PetscFunctionBegin; 2818965ea79SLois Curfman McInnes /* wait on receives */ 2827ef1d9bdSSatish Balay while (1) { 2838798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 2847ef1d9bdSSatish Balay if (!flg) break; 2858965ea79SLois Curfman McInnes 2867ef1d9bdSSatish Balay for (i=0; i<n;) { 2877ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 2882205254eSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 2892205254eSKarl Rupp if (row[j] != rstart) break; 2902205254eSKarl Rupp } 2917ef1d9bdSSatish Balay if (j < n) ncols = j-i; 2927ef1d9bdSSatish Balay else ncols = n-i; 2937ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 2947ef1d9bdSSatish Balay ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 2957ef1d9bdSSatish Balay i = j; 2968965ea79SLois Curfman McInnes } 2977ef1d9bdSSatish Balay } 2988798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 2998965ea79SLois Curfman McInnes 30039ddd567SLois Curfman McInnes ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr); 30139ddd567SLois Curfman McInnes ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr); 3028965ea79SLois Curfman McInnes 3036d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 30439ddd567SLois Curfman McInnes ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 3058965ea79SLois Curfman McInnes } 3063a40ed3dSBarry Smith PetscFunctionReturn(0); 3078965ea79SLois Curfman McInnes } 3088965ea79SLois Curfman McInnes 3094a2ae208SSatish Balay #undef __FUNCT__ 3104a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIDense" 311dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 3128965ea79SLois Curfman McInnes { 313dfbe8321SBarry Smith PetscErrorCode ierr; 31439ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3153a40ed3dSBarry Smith 3163a40ed3dSBarry Smith PetscFunctionBegin; 3173a40ed3dSBarry Smith ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 3183a40ed3dSBarry Smith PetscFunctionReturn(0); 3198965ea79SLois Curfman McInnes } 3208965ea79SLois Curfman McInnes 3218965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the 3228965ea79SLois Curfman McInnes matrix is square and the column and row owerships are identical. 3238965ea79SLois Curfman McInnes This is a BUG. The only way to fix it seems to be to access 3243501a2bdSLois Curfman McInnes mdn->A and mdn->B directly and not through the MatZeroRows() 3258965ea79SLois Curfman McInnes routine. 3268965ea79SLois Curfman McInnes */ 3274a2ae208SSatish Balay #undef __FUNCT__ 3284a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIDense" 3292b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 3308965ea79SLois Curfman McInnes { 33139ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3326849ba73SBarry Smith PetscErrorCode ierr; 333d0f46423SBarry Smith PetscInt i,*owners = A->rmap->range; 33476ec1555SBarry Smith PetscInt *sizes,j,idx,nsends; 33513f74950SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 3367adad957SLisandro Dalcin PetscInt *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source; 33713f74950SBarry Smith PetscInt *lens,*lrows,*values; 33813f74950SBarry Smith PetscMPIInt n,imdex,rank = l->rank,size = l->size; 339ce94432eSBarry Smith MPI_Comm comm; 3408965ea79SLois Curfman McInnes MPI_Request *send_waits,*recv_waits; 3418965ea79SLois Curfman McInnes MPI_Status recv_status,*send_status; 342ace3abfcSBarry Smith PetscBool found; 34397b48c8fSBarry Smith const PetscScalar *xx; 34497b48c8fSBarry Smith PetscScalar *bb; 3458965ea79SLois Curfman McInnes 3463a40ed3dSBarry Smith PetscFunctionBegin; 347ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 348ce94432eSBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(comm,PETSC_ERR_SUP,"Only handles square matrices"); 349b9679d65SBarry Smith if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only handles matrices with identical column and row ownership"); 3508965ea79SLois Curfman McInnes /* first count number of contributors to each processor */ 351f628708eSJed Brown ierr = PetscCalloc1(2*size,&sizes);CHKERRQ(ierr); 352037dbc42SBarry Smith ierr = PetscMalloc1(N+1,&owner);CHKERRQ(ierr); /* see note*/ 3538965ea79SLois Curfman McInnes for (i=0; i<N; i++) { 3548965ea79SLois Curfman McInnes idx = rows[i]; 35535d8aa7fSBarry Smith found = PETSC_FALSE; 3568965ea79SLois Curfman McInnes for (j=0; j<size; j++) { 3578965ea79SLois Curfman McInnes if (idx >= owners[j] && idx < owners[j+1]) { 35876ec1555SBarry Smith sizes[2*j]++; sizes[2*j+1] = 1; owner[i] = j; found = PETSC_TRUE; break; 3598965ea79SLois Curfman McInnes } 3608965ea79SLois Curfman McInnes } 361e32f2f54SBarry Smith if (!found) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 3628965ea79SLois Curfman McInnes } 3632205254eSKarl Rupp nsends = 0; 36476ec1555SBarry Smith for (i=0; i<size; i++) nsends += sizes[2*i+1]; 3658965ea79SLois Curfman McInnes 3668965ea79SLois Curfman McInnes /* inform other processors of number of messages and max length*/ 36776ec1555SBarry Smith ierr = PetscMaxSum(comm,sizes,&nmax,&nrecvs);CHKERRQ(ierr); 3688965ea79SLois Curfman McInnes 3698965ea79SLois Curfman McInnes /* post receives: */ 370785e854fSJed Brown ierr = PetscMalloc1((nrecvs+1)*(nmax+1),&rvalues);CHKERRQ(ierr); 371854ce69bSBarry Smith ierr = PetscMalloc1(nrecvs+1,&recv_waits);CHKERRQ(ierr); 3728965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 37313f74950SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 3748965ea79SLois Curfman McInnes } 3758965ea79SLois Curfman McInnes 3768965ea79SLois Curfman McInnes /* do sends: 3778965ea79SLois Curfman McInnes 1) starts[i] gives the starting index in svalues for stuff going to 3788965ea79SLois Curfman McInnes the ith processor 3798965ea79SLois Curfman McInnes */ 380854ce69bSBarry Smith ierr = PetscMalloc1(N+1,&svalues);CHKERRQ(ierr); 381854ce69bSBarry Smith ierr = PetscMalloc1(nsends+1,&send_waits);CHKERRQ(ierr); 382854ce69bSBarry Smith ierr = PetscMalloc1(size+1,&starts);CHKERRQ(ierr); 3838965ea79SLois Curfman McInnes 3848965ea79SLois Curfman McInnes starts[0] = 0; 38576ec1555SBarry Smith for (i=1; i<size; i++) starts[i] = starts[i-1] + sizes[2*i-2]; 3862205254eSKarl Rupp for (i=0; i<N; i++) svalues[starts[owner[i]]++] = rows[i]; 3872205254eSKarl Rupp 3882205254eSKarl Rupp starts[0] = 0; 38976ec1555SBarry Smith for (i=1; i<size+1; i++) starts[i] = starts[i-1] + sizes[2*i-2]; 3908965ea79SLois Curfman McInnes count = 0; 3918965ea79SLois Curfman McInnes for (i=0; i<size; i++) { 39276ec1555SBarry Smith if (sizes[2*i+1]) { 39376ec1555SBarry Smith ierr = MPI_Isend(svalues+starts[i],sizes[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 3948965ea79SLois Curfman McInnes } 3958965ea79SLois Curfman McInnes } 396606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 3978965ea79SLois Curfman McInnes 3988965ea79SLois Curfman McInnes base = owners[rank]; 3998965ea79SLois Curfman McInnes 4008965ea79SLois Curfman McInnes /* wait on receives */ 401dcca6d9dSJed Brown ierr = PetscMalloc2(nrecvs,&lens,nrecvs,&source);CHKERRQ(ierr); 40274ed9c26SBarry Smith count = nrecvs; 40374ed9c26SBarry Smith slen = 0; 4048965ea79SLois Curfman McInnes while (count) { 405ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 4068965ea79SLois Curfman McInnes /* unpack receives into our local space */ 40713f74950SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 4082205254eSKarl Rupp 4098965ea79SLois Curfman McInnes source[imdex] = recv_status.MPI_SOURCE; 4108965ea79SLois Curfman McInnes lens[imdex] = n; 4118965ea79SLois Curfman McInnes slen += n; 4128965ea79SLois Curfman McInnes count--; 4138965ea79SLois Curfman McInnes } 414606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 4158965ea79SLois Curfman McInnes 4168965ea79SLois Curfman McInnes /* move the data into the send scatter */ 417854ce69bSBarry Smith ierr = PetscMalloc1(slen+1,&lrows);CHKERRQ(ierr); 4188965ea79SLois Curfman McInnes count = 0; 4198965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 4208965ea79SLois Curfman McInnes values = rvalues + i*nmax; 4218965ea79SLois Curfman McInnes for (j=0; j<lens[i]; j++) { 4228965ea79SLois Curfman McInnes lrows[count++] = values[j] - base; 4238965ea79SLois Curfman McInnes } 4248965ea79SLois Curfman McInnes } 425606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 42674ed9c26SBarry Smith ierr = PetscFree2(lens,source);CHKERRQ(ierr); 427606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 42876ec1555SBarry Smith ierr = PetscFree(sizes);CHKERRQ(ierr); 4298965ea79SLois Curfman McInnes 43097b48c8fSBarry Smith /* fix right hand side if needed */ 43197b48c8fSBarry Smith if (x && b) { 43297b48c8fSBarry Smith ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr); 43397b48c8fSBarry Smith ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 43497b48c8fSBarry Smith for (i=0; i<slen; i++) { 43597b48c8fSBarry Smith bb[lrows[i]] = diag*xx[lrows[i]]; 43697b48c8fSBarry Smith } 43797b48c8fSBarry Smith ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr); 43897b48c8fSBarry Smith ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 43997b48c8fSBarry Smith } 44097b48c8fSBarry Smith 4418965ea79SLois Curfman McInnes /* actually zap the local rows */ 442b9679d65SBarry Smith ierr = MatZeroRows(l->A,slen,lrows,0.0,0,0);CHKERRQ(ierr); 443e2eb51b1SBarry Smith if (diag != 0.0) { 444b9679d65SBarry Smith Mat_SeqDense *ll = (Mat_SeqDense*)l->A->data; 445b9679d65SBarry Smith PetscInt m = ll->lda, i; 446b9679d65SBarry Smith 447b9679d65SBarry Smith for (i=0; i<slen; i++) { 448b9679d65SBarry Smith ll->v[lrows[i] + m*(A->cmap->rstart + lrows[i])] = diag; 449b9679d65SBarry Smith } 450b9679d65SBarry Smith } 451606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 4528965ea79SLois Curfman McInnes 4538965ea79SLois Curfman McInnes /* wait on sends */ 4548965ea79SLois Curfman McInnes if (nsends) { 455785e854fSJed Brown ierr = PetscMalloc1(nsends,&send_status);CHKERRQ(ierr); 456ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 457606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 4588965ea79SLois Curfman McInnes } 459606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 460606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 4613a40ed3dSBarry Smith PetscFunctionReturn(0); 4628965ea79SLois Curfman McInnes } 4638965ea79SLois Curfman McInnes 4644a2ae208SSatish Balay #undef __FUNCT__ 4654a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIDense" 466dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4678965ea79SLois Curfman McInnes { 46839ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 469dfbe8321SBarry Smith PetscErrorCode ierr; 470c456f294SBarry Smith 4713a40ed3dSBarry Smith PetscFunctionBegin; 472ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 473ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 47444cd7ae7SLois Curfman McInnes ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy);CHKERRQ(ierr); 4753a40ed3dSBarry Smith PetscFunctionReturn(0); 4768965ea79SLois Curfman McInnes } 4778965ea79SLois Curfman McInnes 4784a2ae208SSatish Balay #undef __FUNCT__ 4794a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIDense" 480dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4818965ea79SLois Curfman McInnes { 48239ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 483dfbe8321SBarry Smith PetscErrorCode ierr; 484c456f294SBarry Smith 4853a40ed3dSBarry Smith PetscFunctionBegin; 486ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 487ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 48844cd7ae7SLois Curfman McInnes ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr); 4893a40ed3dSBarry Smith PetscFunctionReturn(0); 4908965ea79SLois Curfman McInnes } 4918965ea79SLois Curfman McInnes 4924a2ae208SSatish Balay #undef __FUNCT__ 4934a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIDense" 494dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 495096963f5SLois Curfman McInnes { 496096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 497dfbe8321SBarry Smith PetscErrorCode ierr; 49887828ca2SBarry Smith PetscScalar zero = 0.0; 499096963f5SLois Curfman McInnes 5003a40ed3dSBarry Smith PetscFunctionBegin; 5012dcb1b2aSMatthew Knepley ierr = VecSet(yy,zero);CHKERRQ(ierr); 5027c922b88SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 503ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 504ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 5053a40ed3dSBarry Smith PetscFunctionReturn(0); 506096963f5SLois Curfman McInnes } 507096963f5SLois Curfman McInnes 5084a2ae208SSatish Balay #undef __FUNCT__ 5094a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIDense" 510dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 511096963f5SLois Curfman McInnes { 512096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 513dfbe8321SBarry Smith PetscErrorCode ierr; 514096963f5SLois Curfman McInnes 5153a40ed3dSBarry Smith PetscFunctionBegin; 5163501a2bdSLois Curfman McInnes ierr = VecCopy(yy,zz);CHKERRQ(ierr); 5177c922b88SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 518ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 519ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 5203a40ed3dSBarry Smith PetscFunctionReturn(0); 521096963f5SLois Curfman McInnes } 522096963f5SLois Curfman McInnes 5234a2ae208SSatish Balay #undef __FUNCT__ 5244a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIDense" 525dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5268965ea79SLois Curfman McInnes { 52739ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 528096963f5SLois Curfman McInnes Mat_SeqDense *aloc = (Mat_SeqDense*)a->A->data; 529dfbe8321SBarry Smith PetscErrorCode ierr; 530d0f46423SBarry Smith PetscInt len,i,n,m = A->rmap->n,radd; 53187828ca2SBarry Smith PetscScalar *x,zero = 0.0; 532ed3cc1f0SBarry Smith 5333a40ed3dSBarry Smith PetscFunctionBegin; 5342dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 5351ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 536096963f5SLois Curfman McInnes ierr = VecGetSize(v,&n);CHKERRQ(ierr); 537e32f2f54SBarry Smith if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 538d0f46423SBarry Smith len = PetscMin(a->A->rmap->n,a->A->cmap->n); 539d0f46423SBarry Smith radd = A->rmap->rstart*m; 54044cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 541096963f5SLois Curfman McInnes x[i] = aloc->v[radd + i*m + i]; 542096963f5SLois Curfman McInnes } 5431ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 5443a40ed3dSBarry Smith PetscFunctionReturn(0); 5458965ea79SLois Curfman McInnes } 5468965ea79SLois Curfman McInnes 5474a2ae208SSatish Balay #undef __FUNCT__ 5484a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIDense" 549dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5508965ea79SLois Curfman McInnes { 5513501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 552dfbe8321SBarry Smith PetscErrorCode ierr; 553ed3cc1f0SBarry Smith 5543a40ed3dSBarry Smith PetscFunctionBegin; 555aa482453SBarry Smith #if defined(PETSC_USE_LOG) 556d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N); 5578965ea79SLois Curfman McInnes #endif 5588798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 5596bf464f9SBarry Smith ierr = MatDestroy(&mdn->A);CHKERRQ(ierr); 5606bf464f9SBarry Smith ierr = VecDestroy(&mdn->lvec);CHKERRQ(ierr); 5616bf464f9SBarry Smith ierr = VecScatterDestroy(&mdn->Mvctx);CHKERRQ(ierr); 56201b82886SBarry Smith 563bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 564dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 5658baccfbdSHong Zhang 5668baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr); 5678baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr); 5688baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 5698baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL);CHKERRQ(ierr); 5708baccfbdSHong Zhang #endif 571bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr); 572bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL);CHKERRQ(ierr); 573bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 574bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 575bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5768baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMult_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5778baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5788baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5793a40ed3dSBarry Smith PetscFunctionReturn(0); 5808965ea79SLois Curfman McInnes } 58139ddd567SLois Curfman McInnes 5824a2ae208SSatish Balay #undef __FUNCT__ 5834a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_Binary" 5846849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_Binary(Mat mat,PetscViewer viewer) 5858965ea79SLois Curfman McInnes { 58639ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 587dfbe8321SBarry Smith PetscErrorCode ierr; 588aa05aa95SBarry Smith PetscViewerFormat format; 589aa05aa95SBarry Smith int fd; 590d0f46423SBarry Smith PetscInt header[4],mmax,N = mat->cmap->N,i,j,m,k; 591aa05aa95SBarry Smith PetscMPIInt rank,tag = ((PetscObject)viewer)->tag,size; 592578230a0SSatish Balay PetscScalar *work,*v,*vv; 593aa05aa95SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)mdn->A->data; 5947056b6fcSBarry Smith 5953a40ed3dSBarry Smith PetscFunctionBegin; 59639ddd567SLois Curfman McInnes if (mdn->size == 1) { 59739ddd567SLois Curfman McInnes ierr = MatView(mdn->A,viewer);CHKERRQ(ierr); 598aa05aa95SBarry Smith } else { 599aa05aa95SBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 600ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 601ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr); 602aa05aa95SBarry Smith 603aa05aa95SBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 604f4403165SShri Abhyankar if (format == PETSC_VIEWER_NATIVE) { 605aa05aa95SBarry Smith 606aa05aa95SBarry Smith if (!rank) { 607aa05aa95SBarry Smith /* store the matrix as a dense matrix */ 6080700a824SBarry Smith header[0] = MAT_FILE_CLASSID; 609d0f46423SBarry Smith header[1] = mat->rmap->N; 610aa05aa95SBarry Smith header[2] = N; 611aa05aa95SBarry Smith header[3] = MATRIX_BINARY_FORMAT_DENSE; 612aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 613aa05aa95SBarry Smith 614aa05aa95SBarry Smith /* get largest work array needed for transposing array */ 615d0f46423SBarry Smith mmax = mat->rmap->n; 616aa05aa95SBarry Smith for (i=1; i<size; i++) { 617d0f46423SBarry Smith mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]); 6188965ea79SLois Curfman McInnes } 619785e854fSJed Brown ierr = PetscMalloc1(mmax*N,&work);CHKERRQ(ierr); 620aa05aa95SBarry Smith 621aa05aa95SBarry Smith /* write out local array, by rows */ 622d0f46423SBarry Smith m = mat->rmap->n; 623aa05aa95SBarry Smith v = a->v; 624aa05aa95SBarry Smith for (j=0; j<N; j++) { 625aa05aa95SBarry Smith for (i=0; i<m; i++) { 626578230a0SSatish Balay work[j + i*N] = *v++; 627aa05aa95SBarry Smith } 628aa05aa95SBarry Smith } 629aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 630aa05aa95SBarry Smith /* get largest work array to receive messages from other processes, excludes process zero */ 631aa05aa95SBarry Smith mmax = 0; 632aa05aa95SBarry Smith for (i=1; i<size; i++) { 633d0f46423SBarry Smith mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]); 634aa05aa95SBarry Smith } 635785e854fSJed Brown ierr = PetscMalloc1(mmax*N,&vv);CHKERRQ(ierr); 636aa05aa95SBarry Smith for (k = 1; k < size; k++) { 637f8009846SMatthew Knepley v = vv; 638d0f46423SBarry Smith m = mat->rmap->range[k+1] - mat->rmap->range[k]; 639ce94432eSBarry Smith ierr = MPIULong_Recv(v,m*N,MPIU_SCALAR,k,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 640aa05aa95SBarry Smith 641aa05aa95SBarry Smith for (j = 0; j < N; j++) { 642aa05aa95SBarry Smith for (i = 0; i < m; i++) { 643578230a0SSatish Balay work[j + i*N] = *v++; 644aa05aa95SBarry Smith } 645aa05aa95SBarry Smith } 646aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 647aa05aa95SBarry Smith } 648aa05aa95SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 649578230a0SSatish Balay ierr = PetscFree(vv);CHKERRQ(ierr); 650aa05aa95SBarry Smith } else { 651ce94432eSBarry Smith ierr = MPIULong_Send(a->v,mat->rmap->n*mat->cmap->N,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 652aa05aa95SBarry Smith } 653eb3f98d2SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"To store a parallel dense matrix you must first call PetscViewerSetFormat(viewer,PETSC_VIEWER_NATIVE)"); 654aa05aa95SBarry Smith } 6553a40ed3dSBarry Smith PetscFunctionReturn(0); 6568965ea79SLois Curfman McInnes } 6578965ea79SLois Curfman McInnes 6587da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqDense(Mat,PetscViewer); 6599804daf3SBarry Smith #include <petscdraw.h> 6604a2ae208SSatish Balay #undef __FUNCT__ 6614a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_ASCIIorDraworSocket" 6626849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 6638965ea79SLois Curfman McInnes { 66439ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 665dfbe8321SBarry Smith PetscErrorCode ierr; 6667da1fb6eSBarry Smith PetscMPIInt rank = mdn->rank; 66719fd82e9SBarry Smith PetscViewerType vtype; 668ace3abfcSBarry Smith PetscBool iascii,isdraw; 669b0a32e0cSBarry Smith PetscViewer sviewer; 670f3ef73ceSBarry Smith PetscViewerFormat format; 6718965ea79SLois Curfman McInnes 6723a40ed3dSBarry Smith PetscFunctionBegin; 673251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 674251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 67532077d6dSBarry Smith if (iascii) { 676b0a32e0cSBarry Smith ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr); 677b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 678456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6794e220ebcSLois Curfman McInnes MatInfo info; 680888f2ed8SSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 6817b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr); 6827b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr); 683b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6847b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr); 6855d00a290SHong Zhang ierr = VecScatterView(mdn->Mvctx,viewer);CHKERRQ(ierr); 6863a40ed3dSBarry Smith PetscFunctionReturn(0); 687fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6883a40ed3dSBarry Smith PetscFunctionReturn(0); 6898965ea79SLois Curfman McInnes } 690f1af5d2fSBarry Smith } else if (isdraw) { 691b0a32e0cSBarry Smith PetscDraw draw; 692ace3abfcSBarry Smith PetscBool isnull; 693f1af5d2fSBarry Smith 694b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 695b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 696f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 697f1af5d2fSBarry Smith } 69877ed5343SBarry Smith 6997da1fb6eSBarry Smith { 7008965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 7018965ea79SLois Curfman McInnes Mat A; 702d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz; 703ba8c8a56SBarry Smith PetscInt *cols; 704ba8c8a56SBarry Smith PetscScalar *vals; 7058965ea79SLois Curfman McInnes 706ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 7078965ea79SLois Curfman McInnes if (!rank) { 708f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 7093a40ed3dSBarry Smith } else { 710f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 7118965ea79SLois Curfman McInnes } 7127adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 713878740d9SKris Buschelman ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr); 7140298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr); 7153bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 7168965ea79SLois Curfman McInnes 71739ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 71839ddd567SLois Curfman McInnes but it's quick for now */ 71951022da4SBarry Smith A->insertmode = INSERT_VALUES; 7202205254eSKarl Rupp 7212205254eSKarl Rupp row = mat->rmap->rstart; 7222205254eSKarl Rupp m = mdn->A->rmap->n; 7238965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 724ba8c8a56SBarry Smith ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 725ba8c8a56SBarry Smith ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 726ba8c8a56SBarry Smith ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 72739ddd567SLois Curfman McInnes row++; 7288965ea79SLois Curfman McInnes } 7298965ea79SLois Curfman McInnes 7306d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7316d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 732b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 733b9b97703SBarry Smith if (!rank) { 7347da1fb6eSBarry Smith ierr = MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr); 7358965ea79SLois Curfman McInnes } 736b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 737b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 7386bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 7398965ea79SLois Curfman McInnes } 7403a40ed3dSBarry Smith PetscFunctionReturn(0); 7418965ea79SLois Curfman McInnes } 7428965ea79SLois Curfman McInnes 7434a2ae208SSatish Balay #undef __FUNCT__ 7444a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense" 745dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 7468965ea79SLois Curfman McInnes { 747dfbe8321SBarry Smith PetscErrorCode ierr; 748ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw,issocket; 7498965ea79SLois Curfman McInnes 750433994e6SBarry Smith PetscFunctionBegin; 751251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 752251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 753251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 754251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 7550f5bd95cSBarry Smith 75632077d6dSBarry Smith if (iascii || issocket || isdraw) { 757f1af5d2fSBarry Smith ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 7580f5bd95cSBarry Smith } else if (isbinary) { 7593a40ed3dSBarry Smith ierr = MatView_MPIDense_Binary(mat,viewer);CHKERRQ(ierr); 76011aeaf0aSBarry Smith } 7613a40ed3dSBarry Smith PetscFunctionReturn(0); 7628965ea79SLois Curfman McInnes } 7638965ea79SLois Curfman McInnes 7644a2ae208SSatish Balay #undef __FUNCT__ 7654a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIDense" 766dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 7678965ea79SLois Curfman McInnes { 7683501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7693501a2bdSLois Curfman McInnes Mat mdn = mat->A; 770dfbe8321SBarry Smith PetscErrorCode ierr; 771329f5518SBarry Smith PetscReal isend[5],irecv[5]; 7728965ea79SLois Curfman McInnes 7733a40ed3dSBarry Smith PetscFunctionBegin; 7744e220ebcSLois Curfman McInnes info->block_size = 1.0; 7752205254eSKarl Rupp 7764e220ebcSLois Curfman McInnes ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr); 7772205254eSKarl Rupp 7784e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 7794e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 7808965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7814e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7824e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7834e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7844e220ebcSLois Curfman McInnes info->memory = isend[3]; 7854e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7868965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 787ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 7882205254eSKarl Rupp 7894e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7904e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7914e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7924e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7934e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7948965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 795ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 7962205254eSKarl Rupp 7974e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7984e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7994e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 8004e220ebcSLois Curfman McInnes info->memory = irecv[3]; 8014e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 8028965ea79SLois Curfman McInnes } 8034e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 8044e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 8054e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 8063a40ed3dSBarry Smith PetscFunctionReturn(0); 8078965ea79SLois Curfman McInnes } 8088965ea79SLois Curfman McInnes 8094a2ae208SSatish Balay #undef __FUNCT__ 8104a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIDense" 811ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg) 8128965ea79SLois Curfman McInnes { 81339ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 814dfbe8321SBarry Smith PetscErrorCode ierr; 8158965ea79SLois Curfman McInnes 8163a40ed3dSBarry Smith PetscFunctionBegin; 81712c028f9SKris Buschelman switch (op) { 818512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 81912c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 82012c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 8214e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 82212c028f9SKris Buschelman break; 82312c028f9SKris Buschelman case MAT_ROW_ORIENTED: 8244e0d8c25SBarry Smith a->roworiented = flg; 8252205254eSKarl Rupp 8264e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 82712c028f9SKris Buschelman break; 8284e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 82913fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 83012c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 831290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 83212c028f9SKris Buschelman break; 83312c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 8344e0d8c25SBarry Smith a->donotstash = flg; 83512c028f9SKris Buschelman break; 83677e54ba9SKris Buschelman case MAT_SYMMETRIC: 83777e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 8389a4540c5SBarry Smith case MAT_HERMITIAN: 8399a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 840600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 841290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 84277e54ba9SKris Buschelman break; 84312c028f9SKris Buschelman default: 844e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 8453a40ed3dSBarry Smith } 8463a40ed3dSBarry Smith PetscFunctionReturn(0); 8478965ea79SLois Curfman McInnes } 8488965ea79SLois Curfman McInnes 8498965ea79SLois Curfman McInnes 8504a2ae208SSatish Balay #undef __FUNCT__ 8514a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIDense" 852dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 8535b2fa520SLois Curfman McInnes { 8545b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 8555b2fa520SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 85687828ca2SBarry Smith PetscScalar *l,*r,x,*v; 857dfbe8321SBarry Smith PetscErrorCode ierr; 858d0f46423SBarry Smith PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n; 8595b2fa520SLois Curfman McInnes 8605b2fa520SLois Curfman McInnes PetscFunctionBegin; 86172d926a5SLois Curfman McInnes ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr); 8625b2fa520SLois Curfman McInnes if (ll) { 86372d926a5SLois Curfman McInnes ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr); 864e32f2f54SBarry Smith if (s2a != s2) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %d != %d.", s2a, s2); 8651ebc52fbSHong Zhang ierr = VecGetArray(ll,&l);CHKERRQ(ierr); 8665b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 8675b2fa520SLois Curfman McInnes x = l[i]; 8685b2fa520SLois Curfman McInnes v = mat->v + i; 8695b2fa520SLois Curfman McInnes for (j=0; j<n; j++) { (*v) *= x; v+= m;} 8705b2fa520SLois Curfman McInnes } 8711ebc52fbSHong Zhang ierr = VecRestoreArray(ll,&l);CHKERRQ(ierr); 872efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 8735b2fa520SLois Curfman McInnes } 8745b2fa520SLois Curfman McInnes if (rr) { 875175be7b4SMatthew Knepley ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr); 876e32f2f54SBarry Smith if (s3a != s3) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3); 877ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 878ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 8791ebc52fbSHong Zhang ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr); 8805b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 8815b2fa520SLois Curfman McInnes x = r[i]; 8825b2fa520SLois Curfman McInnes v = mat->v + i*m; 8832205254eSKarl Rupp for (j=0; j<m; j++) (*v++) *= x; 8845b2fa520SLois Curfman McInnes } 8851ebc52fbSHong Zhang ierr = VecRestoreArray(mdn->lvec,&r);CHKERRQ(ierr); 886efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 8875b2fa520SLois Curfman McInnes } 8885b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8895b2fa520SLois Curfman McInnes } 8905b2fa520SLois Curfman McInnes 8914a2ae208SSatish Balay #undef __FUNCT__ 8924a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIDense" 893dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 894096963f5SLois Curfman McInnes { 8953501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 8963501a2bdSLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 897dfbe8321SBarry Smith PetscErrorCode ierr; 89813f74950SBarry Smith PetscInt i,j; 899329f5518SBarry Smith PetscReal sum = 0.0; 90087828ca2SBarry Smith PetscScalar *v = mat->v; 9013501a2bdSLois Curfman McInnes 9023a40ed3dSBarry Smith PetscFunctionBegin; 9033501a2bdSLois Curfman McInnes if (mdn->size == 1) { 904064f8208SBarry Smith ierr = MatNorm(mdn->A,type,nrm);CHKERRQ(ierr); 9053501a2bdSLois Curfman McInnes } else { 9063501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 907d0f46423SBarry Smith for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) { 908329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 9093501a2bdSLois Curfman McInnes } 910ce94432eSBarry Smith ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 9118f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 912dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr); 9133a40ed3dSBarry Smith } else if (type == NORM_1) { 914329f5518SBarry Smith PetscReal *tmp,*tmp2; 915dcca6d9dSJed Brown ierr = PetscMalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2);CHKERRQ(ierr); 91674ed9c26SBarry Smith ierr = PetscMemzero(tmp,A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 91774ed9c26SBarry Smith ierr = PetscMemzero(tmp2,A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 918064f8208SBarry Smith *nrm = 0.0; 9193501a2bdSLois Curfman McInnes v = mat->v; 920d0f46423SBarry Smith for (j=0; j<mdn->A->cmap->n; j++) { 921d0f46423SBarry Smith for (i=0; i<mdn->A->rmap->n; i++) { 92267e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 9233501a2bdSLois Curfman McInnes } 9243501a2bdSLois Curfman McInnes } 925ce94432eSBarry Smith ierr = MPI_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 926d0f46423SBarry Smith for (j=0; j<A->cmap->N; j++) { 927064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 9283501a2bdSLois Curfman McInnes } 92974ed9c26SBarry Smith ierr = PetscFree2(tmp,tmp);CHKERRQ(ierr); 930d0f46423SBarry Smith ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr); 9313a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 932329f5518SBarry Smith PetscReal ntemp; 9333501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr); 934ce94432eSBarry Smith ierr = MPI_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 935ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm"); 9363501a2bdSLois Curfman McInnes } 9373a40ed3dSBarry Smith PetscFunctionReturn(0); 9383501a2bdSLois Curfman McInnes } 9393501a2bdSLois Curfman McInnes 9404a2ae208SSatish Balay #undef __FUNCT__ 9414a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIDense" 942fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 9433501a2bdSLois Curfman McInnes { 9443501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 9453501a2bdSLois Curfman McInnes Mat_SeqDense *Aloc = (Mat_SeqDense*)a->A->data; 9463501a2bdSLois Curfman McInnes Mat B; 947d0f46423SBarry Smith PetscInt M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart; 9486849ba73SBarry Smith PetscErrorCode ierr; 94913f74950SBarry Smith PetscInt j,i; 95087828ca2SBarry Smith PetscScalar *v; 9513501a2bdSLois Curfman McInnes 9523a40ed3dSBarry Smith PetscFunctionBegin; 953ce94432eSBarry Smith if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Supports square matrix only in-place"); 954fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX || A == *matout) { 955ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 956d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 9577adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 9580298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(B,NULL);CHKERRQ(ierr); 959fc4dec0aSBarry Smith } else { 960fc4dec0aSBarry Smith B = *matout; 961fc4dec0aSBarry Smith } 9623501a2bdSLois Curfman McInnes 963d0f46423SBarry Smith m = a->A->rmap->n; n = a->A->cmap->n; v = Aloc->v; 964785e854fSJed Brown ierr = PetscMalloc1(m,&rwork);CHKERRQ(ierr); 9653501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 9661acff37aSSatish Balay for (j=0; j<n; j++) { 9673501a2bdSLois Curfman McInnes ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr); 9683501a2bdSLois Curfman McInnes v += m; 9693501a2bdSLois Curfman McInnes } 970606d414cSSatish Balay ierr = PetscFree(rwork);CHKERRQ(ierr); 9716d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9726d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 973815cbec1SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout != A) { 9743501a2bdSLois Curfman McInnes *matout = B; 9753501a2bdSLois Curfman McInnes } else { 976eb6b5d47SBarry Smith ierr = MatHeaderMerge(A,B);CHKERRQ(ierr); 9773501a2bdSLois Curfman McInnes } 9783a40ed3dSBarry Smith PetscFunctionReturn(0); 979096963f5SLois Curfman McInnes } 980096963f5SLois Curfman McInnes 98144cd7ae7SLois Curfman McInnes 9826849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*); 983d84338a6SBarry Smith extern PetscErrorCode MatScale_MPIDense(Mat,PetscScalar); 9848965ea79SLois Curfman McInnes 9854a2ae208SSatish Balay #undef __FUNCT__ 9864994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPIDense" 9874994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A) 988273d9f13SBarry Smith { 989dfbe8321SBarry Smith PetscErrorCode ierr; 990273d9f13SBarry Smith 991273d9f13SBarry Smith PetscFunctionBegin; 992273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr); 993273d9f13SBarry Smith PetscFunctionReturn(0); 994273d9f13SBarry Smith } 995273d9f13SBarry Smith 99630716080SHong Zhang #undef __FUNCT__ 997488007eeSBarry Smith #define __FUNCT__ "MatAXPY_MPIDense" 998488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 999488007eeSBarry Smith { 1000488007eeSBarry Smith PetscErrorCode ierr; 1001488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data; 1002488007eeSBarry Smith 1003488007eeSBarry Smith PetscFunctionBegin; 1004488007eeSBarry Smith ierr = MatAXPY(A->A,alpha,B->A,str);CHKERRQ(ierr); 1005a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 1006488007eeSBarry Smith PetscFunctionReturn(0); 1007488007eeSBarry Smith } 1008488007eeSBarry Smith 1009ba337c44SJed Brown #undef __FUNCT__ 1010ba337c44SJed Brown #define __FUNCT__ "MatConjugate_MPIDense" 10117087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat) 1012ba337c44SJed Brown { 1013ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 1014ba337c44SJed Brown PetscErrorCode ierr; 1015ba337c44SJed Brown 1016ba337c44SJed Brown PetscFunctionBegin; 1017ba337c44SJed Brown ierr = MatConjugate(a->A);CHKERRQ(ierr); 1018ba337c44SJed Brown PetscFunctionReturn(0); 1019ba337c44SJed Brown } 1020ba337c44SJed Brown 1021ba337c44SJed Brown #undef __FUNCT__ 1022ba337c44SJed Brown #define __FUNCT__ "MatRealPart_MPIDense" 1023ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A) 1024ba337c44SJed Brown { 1025ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1026ba337c44SJed Brown PetscErrorCode ierr; 1027ba337c44SJed Brown 1028ba337c44SJed Brown PetscFunctionBegin; 1029ba337c44SJed Brown ierr = MatRealPart(a->A);CHKERRQ(ierr); 1030ba337c44SJed Brown PetscFunctionReturn(0); 1031ba337c44SJed Brown } 1032ba337c44SJed Brown 1033ba337c44SJed Brown #undef __FUNCT__ 1034ba337c44SJed Brown #define __FUNCT__ "MatImaginaryPart_MPIDense" 1035ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 1036ba337c44SJed Brown { 1037ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1038ba337c44SJed Brown PetscErrorCode ierr; 1039ba337c44SJed Brown 1040ba337c44SJed Brown PetscFunctionBegin; 1041ba337c44SJed Brown ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 1042ba337c44SJed Brown PetscFunctionReturn(0); 1043ba337c44SJed Brown } 1044ba337c44SJed Brown 10450716a85fSBarry Smith extern PetscErrorCode MatGetColumnNorms_SeqDense(Mat,NormType,PetscReal*); 10460716a85fSBarry Smith #undef __FUNCT__ 10470716a85fSBarry Smith #define __FUNCT__ "MatGetColumnNorms_MPIDense" 10480716a85fSBarry Smith PetscErrorCode MatGetColumnNorms_MPIDense(Mat A,NormType type,PetscReal *norms) 10490716a85fSBarry Smith { 10500716a85fSBarry Smith PetscErrorCode ierr; 10510716a85fSBarry Smith PetscInt i,n; 10520716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*) A->data; 10530716a85fSBarry Smith PetscReal *work; 10540716a85fSBarry Smith 10550716a85fSBarry Smith PetscFunctionBegin; 10560298fd71SBarry Smith ierr = MatGetSize(A,NULL,&n);CHKERRQ(ierr); 1057785e854fSJed Brown ierr = PetscMalloc1(n,&work);CHKERRQ(ierr); 10580716a85fSBarry Smith ierr = MatGetColumnNorms_SeqDense(a->A,type,work);CHKERRQ(ierr); 10590716a85fSBarry Smith if (type == NORM_2) { 10600716a85fSBarry Smith for (i=0; i<n; i++) work[i] *= work[i]; 10610716a85fSBarry Smith } 10620716a85fSBarry Smith if (type == NORM_INFINITY) { 10630716a85fSBarry Smith ierr = MPI_Allreduce(work,norms,n,MPIU_REAL,MPIU_MAX,A->hdr.comm);CHKERRQ(ierr); 10640716a85fSBarry Smith } else { 10650716a85fSBarry Smith ierr = MPI_Allreduce(work,norms,n,MPIU_REAL,MPIU_SUM,A->hdr.comm);CHKERRQ(ierr); 10660716a85fSBarry Smith } 10670716a85fSBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 10680716a85fSBarry Smith if (type == NORM_2) { 10698f1a2a5eSBarry Smith for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]); 10700716a85fSBarry Smith } 10710716a85fSBarry Smith PetscFunctionReturn(0); 10720716a85fSBarry Smith } 10730716a85fSBarry Smith 107473a71a0fSBarry Smith #undef __FUNCT__ 107573a71a0fSBarry Smith #define __FUNCT__ "MatSetRandom_MPIDense" 107673a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx) 107773a71a0fSBarry Smith { 107873a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense*)x->data; 107973a71a0fSBarry Smith PetscErrorCode ierr; 108073a71a0fSBarry Smith PetscScalar *a; 108173a71a0fSBarry Smith PetscInt m,n,i; 108273a71a0fSBarry Smith 108373a71a0fSBarry Smith PetscFunctionBegin; 108473a71a0fSBarry Smith ierr = MatGetSize(d->A,&m,&n);CHKERRQ(ierr); 10858c778c55SBarry Smith ierr = MatDenseGetArray(d->A,&a);CHKERRQ(ierr); 108673a71a0fSBarry Smith for (i=0; i<m*n; i++) { 108773a71a0fSBarry Smith ierr = PetscRandomGetValue(rctx,a+i);CHKERRQ(ierr); 108873a71a0fSBarry Smith } 10898c778c55SBarry Smith ierr = MatDenseRestoreArray(d->A,&a);CHKERRQ(ierr); 109073a71a0fSBarry Smith PetscFunctionReturn(0); 109173a71a0fSBarry Smith } 109273a71a0fSBarry Smith 10938965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 109409dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense, 109509dc0095SBarry Smith MatGetRow_MPIDense, 109609dc0095SBarry Smith MatRestoreRow_MPIDense, 109709dc0095SBarry Smith MatMult_MPIDense, 109897304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 10997c922b88SBarry Smith MatMultTranspose_MPIDense, 11007c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 11018965ea79SLois Curfman McInnes 0, 110209dc0095SBarry Smith 0, 110309dc0095SBarry Smith 0, 110497304618SKris Buschelman /* 10*/ 0, 110509dc0095SBarry Smith 0, 110609dc0095SBarry Smith 0, 110709dc0095SBarry Smith 0, 110809dc0095SBarry Smith MatTranspose_MPIDense, 110997304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 11106e4ee0c6SHong Zhang MatEqual_MPIDense, 111109dc0095SBarry Smith MatGetDiagonal_MPIDense, 11125b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 111309dc0095SBarry Smith MatNorm_MPIDense, 111497304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 111509dc0095SBarry Smith MatAssemblyEnd_MPIDense, 111609dc0095SBarry Smith MatSetOption_MPIDense, 111709dc0095SBarry Smith MatZeroEntries_MPIDense, 1118d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1119919b68f7SBarry Smith 0, 112001b82886SBarry Smith 0, 112101b82886SBarry Smith 0, 112201b82886SBarry Smith 0, 11234994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1124273d9f13SBarry Smith 0, 112509dc0095SBarry Smith 0, 11268c778c55SBarry Smith 0, 11278c778c55SBarry Smith 0, 1128d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 112909dc0095SBarry Smith 0, 113009dc0095SBarry Smith 0, 113109dc0095SBarry Smith 0, 113209dc0095SBarry Smith 0, 1133d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 11342ce60cd0SSatish Balay MatGetSubMatrices_MPIDense, 113509dc0095SBarry Smith 0, 113609dc0095SBarry Smith MatGetValues_MPIDense, 113709dc0095SBarry Smith 0, 1138d519adbfSMatthew Knepley /* 44*/ 0, 113909dc0095SBarry Smith MatScale_MPIDense, 114009dc0095SBarry Smith 0, 114109dc0095SBarry Smith 0, 114209dc0095SBarry Smith 0, 114373a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 114409dc0095SBarry Smith 0, 114509dc0095SBarry Smith 0, 114609dc0095SBarry Smith 0, 114709dc0095SBarry Smith 0, 1148d519adbfSMatthew Knepley /* 54*/ 0, 114909dc0095SBarry Smith 0, 115009dc0095SBarry Smith 0, 115109dc0095SBarry Smith 0, 115209dc0095SBarry Smith 0, 1153d519adbfSMatthew Knepley /* 59*/ MatGetSubMatrix_MPIDense, 1154b9b97703SBarry Smith MatDestroy_MPIDense, 1155b9b97703SBarry Smith MatView_MPIDense, 1156357abbc8SBarry Smith 0, 115797304618SKris Buschelman 0, 1158d519adbfSMatthew Knepley /* 64*/ 0, 115997304618SKris Buschelman 0, 116097304618SKris Buschelman 0, 116197304618SKris Buschelman 0, 116297304618SKris Buschelman 0, 1163d519adbfSMatthew Knepley /* 69*/ 0, 116497304618SKris Buschelman 0, 116597304618SKris Buschelman 0, 116697304618SKris Buschelman 0, 116797304618SKris Buschelman 0, 1168d519adbfSMatthew Knepley /* 74*/ 0, 116997304618SKris Buschelman 0, 117097304618SKris Buschelman 0, 117197304618SKris Buschelman 0, 117297304618SKris Buschelman 0, 1173d519adbfSMatthew Knepley /* 79*/ 0, 117497304618SKris Buschelman 0, 117597304618SKris Buschelman 0, 117697304618SKris Buschelman 0, 11775bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1178865e5f61SKris Buschelman 0, 1179865e5f61SKris Buschelman 0, 1180865e5f61SKris Buschelman 0, 1181865e5f61SKris Buschelman 0, 1182865e5f61SKris Buschelman 0, 1183d519adbfSMatthew Knepley /* 89*/ 1184865e5f61SKris Buschelman 0, 1185865e5f61SKris Buschelman 0, 1186865e5f61SKris Buschelman 0, 11872fbe02b9SBarry Smith 0, 1188ba337c44SJed Brown 0, 1189d519adbfSMatthew Knepley /* 94*/ 0, 1190865e5f61SKris Buschelman 0, 1191865e5f61SKris Buschelman 0, 1192ba337c44SJed Brown 0, 1193ba337c44SJed Brown 0, 1194ba337c44SJed Brown /* 99*/ 0, 1195ba337c44SJed Brown 0, 1196ba337c44SJed Brown 0, 1197ba337c44SJed Brown MatConjugate_MPIDense, 1198ba337c44SJed Brown 0, 1199ba337c44SJed Brown /*104*/ 0, 1200ba337c44SJed Brown MatRealPart_MPIDense, 1201ba337c44SJed Brown MatImaginaryPart_MPIDense, 120286d161a7SShri Abhyankar 0, 120386d161a7SShri Abhyankar 0, 120486d161a7SShri Abhyankar /*109*/ 0, 120586d161a7SShri Abhyankar 0, 120686d161a7SShri Abhyankar 0, 120786d161a7SShri Abhyankar 0, 120886d161a7SShri Abhyankar 0, 120986d161a7SShri Abhyankar /*114*/ 0, 121086d161a7SShri Abhyankar 0, 121186d161a7SShri Abhyankar 0, 121286d161a7SShri Abhyankar 0, 121386d161a7SShri Abhyankar 0, 121486d161a7SShri Abhyankar /*119*/ 0, 121586d161a7SShri Abhyankar 0, 121686d161a7SShri Abhyankar 0, 12170716a85fSBarry Smith 0, 12180716a85fSBarry Smith 0, 12190716a85fSBarry Smith /*124*/ 0, 12203964eb88SJed Brown MatGetColumnNorms_MPIDense, 12213964eb88SJed Brown 0, 12223964eb88SJed Brown 0, 12233964eb88SJed Brown 0, 12243964eb88SJed Brown /*129*/ 0, 12253964eb88SJed Brown 0, 12263964eb88SJed Brown 0, 12273964eb88SJed Brown 0, 12283964eb88SJed Brown 0, 12293964eb88SJed Brown /*134*/ 0, 12303964eb88SJed Brown 0, 12313964eb88SJed Brown 0, 12323964eb88SJed Brown 0, 12333964eb88SJed Brown 0, 12343964eb88SJed Brown /*139*/ 0, 1235f9426fe0SMark Adams 0, 12363964eb88SJed Brown 0 1237ba337c44SJed Brown }; 12388965ea79SLois Curfman McInnes 12394a2ae208SSatish Balay #undef __FUNCT__ 1240a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIDenseSetPreallocation_MPIDense" 12417087cfbeSBarry Smith PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1242a23d5eceSKris Buschelman { 1243a23d5eceSKris Buschelman Mat_MPIDense *a; 1244dfbe8321SBarry Smith PetscErrorCode ierr; 1245a23d5eceSKris Buschelman 1246a23d5eceSKris Buschelman PetscFunctionBegin; 1247a23d5eceSKris Buschelman mat->preallocated = PETSC_TRUE; 1248a23d5eceSKris Buschelman /* Note: For now, when data is specified above, this assumes the user correctly 1249a23d5eceSKris Buschelman allocates the local dense storage space. We should add error checking. */ 1250a23d5eceSKris Buschelman 1251a23d5eceSKris Buschelman a = (Mat_MPIDense*)mat->data; 125234ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr); 125334ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr); 125434ef9618SShri Abhyankar a->nvec = mat->cmap->n; 125534ef9618SShri Abhyankar 1256f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr); 1257d0f46423SBarry Smith ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr); 12585c5985e7SKris Buschelman ierr = MatSetType(a->A,MATSEQDENSE);CHKERRQ(ierr); 12595c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr); 12603bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 1261a23d5eceSKris Buschelman PetscFunctionReturn(0); 1262a23d5eceSKris Buschelman } 1263a23d5eceSKris Buschelman 126465b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1265a23d5eceSKris Buschelman #undef __FUNCT__ 12668baccfbdSHong Zhang #define __FUNCT__ "MatConvert_MPIDense_Elemental" 12678baccfbdSHong Zhang PETSC_EXTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 12688baccfbdSHong Zhang { 12698ea901baSHong Zhang Mat mat_elemental; 12708ea901baSHong Zhang PetscErrorCode ierr; 127165b80a83SHong Zhang PetscScalar *array,*v_rowwise; 12728ea901baSHong Zhang PetscInt m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,j,k,*rows,*cols; 12738ea901baSHong Zhang 12748baccfbdSHong Zhang PetscFunctionBegin; 127565b80a83SHong Zhang ierr = PetscMalloc3(m*N,&v_rowwise,m,&rows,N,&cols);CHKERRQ(ierr); 12768ea901baSHong Zhang ierr = MatDenseGetArray(A,&array);CHKERRQ(ierr); 127765b80a83SHong Zhang /* convert column-wise array into row-wise v_rowwise, see MatSetValues_Elemental() */ 12788ea901baSHong Zhang k = 0; 12798ea901baSHong Zhang for (j=0; j<N; j++) { 12808ea901baSHong Zhang cols[j] = j; 12818ea901baSHong Zhang for (i=0; i<m; i++) { 128265b80a83SHong Zhang v_rowwise[i*N+j] = array[k++]; 12838ea901baSHong Zhang } 12848ea901baSHong Zhang } 12858ea901baSHong Zhang for (i=0; i<m; i++) { 12868ea901baSHong Zhang rows[i] = rstart + i; 12878ea901baSHong Zhang } 12888ea901baSHong Zhang ierr = MatDenseRestoreArray(A,&array);CHKERRQ(ierr); 12898ea901baSHong Zhang 12908ea901baSHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr); 12918ea901baSHong Zhang ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 12928ea901baSHong Zhang ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr); 12938ea901baSHong Zhang ierr = MatSetUp(mat_elemental);CHKERRQ(ierr); 12948ea901baSHong Zhang 12958ea901baSHong Zhang /* PETSc-Elemental interaface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 129665b80a83SHong Zhang ierr = MatSetValues(mat_elemental,m,rows,N,cols,v_rowwise,ADD_VALUES);CHKERRQ(ierr); 12978ea901baSHong Zhang ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 12988ea901baSHong Zhang ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 129965b80a83SHong Zhang ierr = PetscFree3(v_rowwise,rows,cols);CHKERRQ(ierr); 13008ea901baSHong Zhang 13018ea901baSHong Zhang if (reuse == MAT_REUSE_MATRIX) { 13028ea901baSHong Zhang ierr = MatHeaderReplace(A,mat_elemental);CHKERRQ(ierr); 13038ea901baSHong Zhang } else { 13048ea901baSHong Zhang *newmat = mat_elemental; 13058ea901baSHong Zhang } 13068baccfbdSHong Zhang PetscFunctionReturn(0); 13078baccfbdSHong Zhang } 130865b80a83SHong Zhang #endif 13098baccfbdSHong Zhang 13108baccfbdSHong Zhang #undef __FUNCT__ 13114a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIDense" 13128cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat) 1313273d9f13SBarry Smith { 1314273d9f13SBarry Smith Mat_MPIDense *a; 1315dfbe8321SBarry Smith PetscErrorCode ierr; 1316273d9f13SBarry Smith 1317273d9f13SBarry Smith PetscFunctionBegin; 1318b00a9115SJed Brown ierr = PetscNewLog(mat,&a);CHKERRQ(ierr); 1319b0a32e0cSBarry Smith mat->data = (void*)a; 1320273d9f13SBarry Smith ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1321273d9f13SBarry Smith 1322273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1323ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&a->rank);CHKERRQ(ierr); 1324ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&a->size);CHKERRQ(ierr); 1325273d9f13SBarry Smith 1326273d9f13SBarry Smith /* build cache for off array entries formed */ 1327273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 13282205254eSKarl Rupp 1329ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash);CHKERRQ(ierr); 1330273d9f13SBarry Smith 1331273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1332273d9f13SBarry Smith a->lvec = 0; 1333273d9f13SBarry Smith a->Mvctx = 0; 1334273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1335273d9f13SBarry Smith 1336bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense);CHKERRQ(ierr); 1337bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense);CHKERRQ(ierr); 13388baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 13398baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental);CHKERRQ(ierr); 13408baccfbdSHong Zhang #endif 1341bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPIDense);CHKERRQ(ierr); 1342bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr); 1343bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",MatMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr); 1344bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 1345bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 13468949adfdSHong Zhang 13478949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMult_mpiaij_mpidense_C",MatTransposeMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr); 13488949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",MatTransposeMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 13498949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",MatTransposeMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 135038aed534SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr); 1351273d9f13SBarry Smith PetscFunctionReturn(0); 1352273d9f13SBarry Smith } 1353273d9f13SBarry Smith 1354209238afSKris Buschelman /*MC 1355002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1356209238afSKris Buschelman 1357209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 1358209238afSKris Buschelman and MATMPIDENSE otherwise. 1359209238afSKris Buschelman 1360209238afSKris Buschelman Options Database Keys: 1361209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 1362209238afSKris Buschelman 1363209238afSKris Buschelman Level: beginner 1364209238afSKris Buschelman 136501b82886SBarry Smith 1366209238afSKris Buschelman .seealso: MatCreateMPIDense,MATSEQDENSE,MATMPIDENSE 1367209238afSKris Buschelman M*/ 1368209238afSKris Buschelman 13694a2ae208SSatish Balay #undef __FUNCT__ 13704a2ae208SSatish Balay #define __FUNCT__ "MatMPIDenseSetPreallocation" 1371273d9f13SBarry Smith /*@C 1372273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1373273d9f13SBarry Smith 1374273d9f13SBarry Smith Not collective 1375273d9f13SBarry Smith 1376273d9f13SBarry Smith Input Parameters: 13771c4f3114SJed Brown . B - the matrix 13780298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL for PETSc 1379273d9f13SBarry Smith to control all matrix memory allocation. 1380273d9f13SBarry Smith 1381273d9f13SBarry Smith Notes: 1382273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 1383273d9f13SBarry Smith storage by columns. 1384273d9f13SBarry Smith 1385273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1386273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 13870298fd71SBarry Smith set data=NULL. 1388273d9f13SBarry Smith 1389273d9f13SBarry Smith Level: intermediate 1390273d9f13SBarry Smith 1391273d9f13SBarry Smith .keywords: matrix,dense, parallel 1392273d9f13SBarry Smith 1393273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 1394273d9f13SBarry Smith @*/ 13951c4f3114SJed Brown PetscErrorCode MatMPIDenseSetPreallocation(Mat B,PetscScalar *data) 1396273d9f13SBarry Smith { 13974ac538c5SBarry Smith PetscErrorCode ierr; 1398273d9f13SBarry Smith 1399273d9f13SBarry Smith PetscFunctionBegin; 14001c4f3114SJed Brown ierr = PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data));CHKERRQ(ierr); 1401273d9f13SBarry Smith PetscFunctionReturn(0); 1402273d9f13SBarry Smith } 1403273d9f13SBarry Smith 14044a2ae208SSatish Balay #undef __FUNCT__ 140569b1f4b7SBarry Smith #define __FUNCT__ "MatCreateDense" 14068965ea79SLois Curfman McInnes /*@C 140769b1f4b7SBarry Smith MatCreateDense - Creates a parallel matrix in dense format. 14088965ea79SLois Curfman McInnes 1409db81eaa0SLois Curfman McInnes Collective on MPI_Comm 1410db81eaa0SLois Curfman McInnes 14118965ea79SLois Curfman McInnes Input Parameters: 1412db81eaa0SLois Curfman McInnes + comm - MPI communicator 14138965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1414db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 14158965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 1416db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 14170298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL (NULL_SCALAR for Fortran users) for PETSc 1418dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 14198965ea79SLois Curfman McInnes 14208965ea79SLois Curfman McInnes Output Parameter: 1421477f1c0bSLois Curfman McInnes . A - the matrix 14228965ea79SLois Curfman McInnes 1423b259b22eSLois Curfman McInnes Notes: 142439ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 142539ddd567SLois Curfman McInnes storage by columns. 14268965ea79SLois Curfman McInnes 142718f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 142818f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 14290298fd71SBarry Smith set data=NULL (NULL_SCALAR for Fortran users). 143018f449edSLois Curfman McInnes 14318965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 14328965ea79SLois Curfman McInnes (possibly both). 14338965ea79SLois Curfman McInnes 1434027ccd11SLois Curfman McInnes Level: intermediate 1435027ccd11SLois Curfman McInnes 143639ddd567SLois Curfman McInnes .keywords: matrix,dense, parallel 14378965ea79SLois Curfman McInnes 143839ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 14398965ea79SLois Curfman McInnes @*/ 144069b1f4b7SBarry Smith PetscErrorCode MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 14418965ea79SLois Curfman McInnes { 14426849ba73SBarry Smith PetscErrorCode ierr; 144313f74950SBarry Smith PetscMPIInt size; 14448965ea79SLois Curfman McInnes 14453a40ed3dSBarry Smith PetscFunctionBegin; 1446f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 1447f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 1448273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1449273d9f13SBarry Smith if (size > 1) { 1450273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr); 1451273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr); 1452273d9f13SBarry Smith } else { 1453273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 1454273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 14558c469469SLois Curfman McInnes } 14563a40ed3dSBarry Smith PetscFunctionReturn(0); 14578965ea79SLois Curfman McInnes } 14588965ea79SLois Curfman McInnes 14594a2ae208SSatish Balay #undef __FUNCT__ 14604a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIDense" 14616849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 14628965ea79SLois Curfman McInnes { 14638965ea79SLois Curfman McInnes Mat mat; 14643501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 1465dfbe8321SBarry Smith PetscErrorCode ierr; 14668965ea79SLois Curfman McInnes 14673a40ed3dSBarry Smith PetscFunctionBegin; 14688965ea79SLois Curfman McInnes *newmat = 0; 1469ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&mat);CHKERRQ(ierr); 1470d0f46423SBarry Smith ierr = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 14717adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr); 1472834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 1473e04c1aa4SHong Zhang ierr = PetscMemcpy(mat->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 14745aa7edbeSHong Zhang 1475d5f3da31SBarry Smith mat->factortype = A->factortype; 1476c456f294SBarry Smith mat->assembled = PETSC_TRUE; 1477273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 14788965ea79SLois Curfman McInnes 14798965ea79SLois Curfman McInnes a->size = oldmat->size; 14808965ea79SLois Curfman McInnes a->rank = oldmat->rank; 1481e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 1482b9b97703SBarry Smith a->nvec = oldmat->nvec; 14833782ba37SSatish Balay a->donotstash = oldmat->donotstash; 1484e04c1aa4SHong Zhang 14851e1e43feSBarry Smith ierr = PetscLayoutReference(A->rmap,&mat->rmap);CHKERRQ(ierr); 14861e1e43feSBarry Smith ierr = PetscLayoutReference(A->cmap,&mat->cmap);CHKERRQ(ierr); 14878965ea79SLois Curfman McInnes 1488329f5518SBarry Smith ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 14895609ef8eSBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 14903bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 149101b82886SBarry Smith 14928965ea79SLois Curfman McInnes *newmat = mat; 14933a40ed3dSBarry Smith PetscFunctionReturn(0); 14948965ea79SLois Curfman McInnes } 14958965ea79SLois Curfman McInnes 14964a2ae208SSatish Balay #undef __FUNCT__ 14975bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPIDense_DenseInFile" 14985bba2384SShri Abhyankar PetscErrorCode MatLoad_MPIDense_DenseInFile(MPI_Comm comm,PetscInt fd,PetscInt M,PetscInt N,Mat newmat,PetscInt sizesset) 149986d161a7SShri Abhyankar { 150086d161a7SShri Abhyankar PetscErrorCode ierr; 150186d161a7SShri Abhyankar PetscMPIInt rank,size; 150286d161a7SShri Abhyankar PetscInt *rowners,i,m,nz,j; 150386d161a7SShri Abhyankar PetscScalar *array,*vals,*vals_ptr; 150486d161a7SShri Abhyankar 150586d161a7SShri Abhyankar PetscFunctionBegin; 150686d161a7SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 150786d161a7SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 150886d161a7SShri Abhyankar 150986d161a7SShri Abhyankar /* determine ownership of all rows */ 151086d161a7SShri Abhyankar if (newmat->rmap->n < 0) m = M/size + ((M % size) > rank); 151186d161a7SShri Abhyankar else m = newmat->rmap->n; 1512854ce69bSBarry Smith ierr = PetscMalloc1(size+2,&rowners);CHKERRQ(ierr); 151386d161a7SShri Abhyankar ierr = MPI_Allgather(&m,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr); 151486d161a7SShri Abhyankar rowners[0] = 0; 151586d161a7SShri Abhyankar for (i=2; i<=size; i++) { 151686d161a7SShri Abhyankar rowners[i] += rowners[i-1]; 151786d161a7SShri Abhyankar } 151886d161a7SShri Abhyankar 151986d161a7SShri Abhyankar if (!sizesset) { 152086d161a7SShri Abhyankar ierr = MatSetSizes(newmat,m,PETSC_DECIDE,M,N);CHKERRQ(ierr); 152186d161a7SShri Abhyankar } 15220298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 15238c778c55SBarry Smith ierr = MatDenseGetArray(newmat,&array);CHKERRQ(ierr); 152486d161a7SShri Abhyankar 152586d161a7SShri Abhyankar if (!rank) { 1526785e854fSJed Brown ierr = PetscMalloc1(m*N,&vals);CHKERRQ(ierr); 152786d161a7SShri Abhyankar 152886d161a7SShri Abhyankar /* read in my part of the matrix numerical values */ 152986d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,m*N,PETSC_SCALAR);CHKERRQ(ierr); 153086d161a7SShri Abhyankar 153186d161a7SShri Abhyankar /* insert into matrix-by row (this is why cannot directly read into array */ 153286d161a7SShri Abhyankar vals_ptr = vals; 153386d161a7SShri Abhyankar for (i=0; i<m; i++) { 153486d161a7SShri Abhyankar for (j=0; j<N; j++) { 153586d161a7SShri Abhyankar array[i + j*m] = *vals_ptr++; 153686d161a7SShri Abhyankar } 153786d161a7SShri Abhyankar } 153886d161a7SShri Abhyankar 153986d161a7SShri Abhyankar /* read in other processors and ship out */ 154086d161a7SShri Abhyankar for (i=1; i<size; i++) { 154186d161a7SShri Abhyankar nz = (rowners[i+1] - rowners[i])*N; 154286d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 1543a25532f0SBarry Smith ierr = MPIULong_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)(newmat))->tag,comm);CHKERRQ(ierr); 154486d161a7SShri Abhyankar } 154586d161a7SShri Abhyankar } else { 154686d161a7SShri Abhyankar /* receive numeric values */ 1547785e854fSJed Brown ierr = PetscMalloc1(m*N,&vals);CHKERRQ(ierr); 154886d161a7SShri Abhyankar 154986d161a7SShri Abhyankar /* receive message of values*/ 1550a25532f0SBarry Smith ierr = MPIULong_Recv(vals,m*N,MPIU_SCALAR,0,((PetscObject)(newmat))->tag,comm);CHKERRQ(ierr); 155186d161a7SShri Abhyankar 155286d161a7SShri Abhyankar /* insert into matrix-by row (this is why cannot directly read into array */ 155386d161a7SShri Abhyankar vals_ptr = vals; 155486d161a7SShri Abhyankar for (i=0; i<m; i++) { 155586d161a7SShri Abhyankar for (j=0; j<N; j++) { 155686d161a7SShri Abhyankar array[i + j*m] = *vals_ptr++; 155786d161a7SShri Abhyankar } 155886d161a7SShri Abhyankar } 155986d161a7SShri Abhyankar } 15608c778c55SBarry Smith ierr = MatDenseRestoreArray(newmat,&array);CHKERRQ(ierr); 156186d161a7SShri Abhyankar ierr = PetscFree(rowners);CHKERRQ(ierr); 156286d161a7SShri Abhyankar ierr = PetscFree(vals);CHKERRQ(ierr); 156386d161a7SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 156486d161a7SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 156586d161a7SShri Abhyankar PetscFunctionReturn(0); 156686d161a7SShri Abhyankar } 156786d161a7SShri Abhyankar 156886d161a7SShri Abhyankar #undef __FUNCT__ 15695bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPIDense" 1570112444f4SShri Abhyankar PetscErrorCode MatLoad_MPIDense(Mat newmat,PetscViewer viewer) 157186d161a7SShri Abhyankar { 1572dfdea288SBarry Smith Mat_MPIDense *a; 157386d161a7SShri Abhyankar PetscScalar *vals,*svals; 1574ce94432eSBarry Smith MPI_Comm comm; 157586d161a7SShri Abhyankar MPI_Status status; 157686d161a7SShri Abhyankar PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*rowners,*sndcounts,m,maxnz; 157786d161a7SShri Abhyankar PetscInt header[4],*rowlengths = 0,M,N,*cols; 157886d161a7SShri Abhyankar PetscInt *ourlens,*procsnz = 0,*offlens,jj,*mycols,*smycols; 157986d161a7SShri Abhyankar PetscInt i,nz,j,rstart,rend,sizesset=1,grows,gcols; 158086d161a7SShri Abhyankar int fd; 158186d161a7SShri Abhyankar PetscErrorCode ierr; 158286d161a7SShri Abhyankar 158386d161a7SShri Abhyankar PetscFunctionBegin; 1584c98fd787SBarry Smith /* force binary viewer to load .info file if it has not yet done so */ 1585c98fd787SBarry Smith ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 1586ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 158786d161a7SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 158886d161a7SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 158986d161a7SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 15905872f025SBarry Smith if (!rank) { 159186d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr); 159286d161a7SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 159386d161a7SShri Abhyankar } 159486d161a7SShri Abhyankar if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0; 159586d161a7SShri Abhyankar 159686d161a7SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 159786d161a7SShri Abhyankar M = header[1]; N = header[2]; nz = header[3]; 159886d161a7SShri Abhyankar 159986d161a7SShri Abhyankar /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */ 160086d161a7SShri Abhyankar if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M; 160186d161a7SShri Abhyankar if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N; 160286d161a7SShri Abhyankar 160386d161a7SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 160486d161a7SShri Abhyankar if (sizesset) { 160586d161a7SShri Abhyankar ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr); 160686d161a7SShri Abhyankar } 1607abd38a8fSBarry Smith if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows); 1608abd38a8fSBarry Smith if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols); 160986d161a7SShri Abhyankar 161086d161a7SShri Abhyankar /* 161186d161a7SShri Abhyankar Handle case where matrix is stored on disk as a dense matrix 161286d161a7SShri Abhyankar */ 161386d161a7SShri Abhyankar if (nz == MATRIX_BINARY_FORMAT_DENSE) { 16145bba2384SShri Abhyankar ierr = MatLoad_MPIDense_DenseInFile(comm,fd,M,N,newmat,sizesset);CHKERRQ(ierr); 161586d161a7SShri Abhyankar PetscFunctionReturn(0); 161686d161a7SShri Abhyankar } 161786d161a7SShri Abhyankar 161886d161a7SShri Abhyankar /* determine ownership of all rows */ 16192205254eSKarl Rupp if (newmat->rmap->n < 0) { 16202205254eSKarl Rupp ierr = PetscMPIIntCast(M/size + ((M % size) > rank),&m);CHKERRQ(ierr); 16212205254eSKarl Rupp } else { 16222205254eSKarl Rupp ierr = PetscMPIIntCast(newmat->rmap->n,&m);CHKERRQ(ierr); 16232205254eSKarl Rupp } 1624854ce69bSBarry Smith ierr = PetscMalloc1(size+2,&rowners);CHKERRQ(ierr); 162586d161a7SShri Abhyankar ierr = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 162686d161a7SShri Abhyankar rowners[0] = 0; 162786d161a7SShri Abhyankar for (i=2; i<=size; i++) { 162886d161a7SShri Abhyankar rowners[i] += rowners[i-1]; 162986d161a7SShri Abhyankar } 163086d161a7SShri Abhyankar rstart = rowners[rank]; 163186d161a7SShri Abhyankar rend = rowners[rank+1]; 163286d161a7SShri Abhyankar 163386d161a7SShri Abhyankar /* distribute row lengths to all processors */ 1634dcca6d9dSJed Brown ierr = PetscMalloc2(rend-rstart,&ourlens,rend-rstart,&offlens);CHKERRQ(ierr); 163586d161a7SShri Abhyankar if (!rank) { 1636785e854fSJed Brown ierr = PetscMalloc1(M,&rowlengths);CHKERRQ(ierr); 163786d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 1638785e854fSJed Brown ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr); 163986d161a7SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = rowners[i+1] - rowners[i]; 164086d161a7SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr); 164186d161a7SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 164286d161a7SShri Abhyankar } else { 164386d161a7SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr); 164486d161a7SShri Abhyankar } 164586d161a7SShri Abhyankar 164686d161a7SShri Abhyankar if (!rank) { 164786d161a7SShri Abhyankar /* calculate the number of nonzeros on each processor */ 1648785e854fSJed Brown ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr); 164986d161a7SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 165086d161a7SShri Abhyankar for (i=0; i<size; i++) { 165186d161a7SShri Abhyankar for (j=rowners[i]; j< rowners[i+1]; j++) { 165286d161a7SShri Abhyankar procsnz[i] += rowlengths[j]; 165386d161a7SShri Abhyankar } 165486d161a7SShri Abhyankar } 165586d161a7SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 165686d161a7SShri Abhyankar 165786d161a7SShri Abhyankar /* determine max buffer needed and allocate it */ 165886d161a7SShri Abhyankar maxnz = 0; 165986d161a7SShri Abhyankar for (i=0; i<size; i++) { 166086d161a7SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 166186d161a7SShri Abhyankar } 1662785e854fSJed Brown ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr); 166386d161a7SShri Abhyankar 166486d161a7SShri Abhyankar /* read in my part of the matrix column indices */ 166586d161a7SShri Abhyankar nz = procsnz[0]; 1666785e854fSJed Brown ierr = PetscMalloc1(nz,&mycols);CHKERRQ(ierr); 166786d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 166886d161a7SShri Abhyankar 166986d161a7SShri Abhyankar /* read in every one elses and ship off */ 167086d161a7SShri Abhyankar for (i=1; i<size; i++) { 167186d161a7SShri Abhyankar nz = procsnz[i]; 167286d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 167386d161a7SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 167486d161a7SShri Abhyankar } 167586d161a7SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 167686d161a7SShri Abhyankar } else { 167786d161a7SShri Abhyankar /* determine buffer space needed for message */ 167886d161a7SShri Abhyankar nz = 0; 167986d161a7SShri Abhyankar for (i=0; i<m; i++) { 168086d161a7SShri Abhyankar nz += ourlens[i]; 168186d161a7SShri Abhyankar } 1682854ce69bSBarry Smith ierr = PetscMalloc1(nz+1,&mycols);CHKERRQ(ierr); 168386d161a7SShri Abhyankar 168486d161a7SShri Abhyankar /* receive message of column indices*/ 168586d161a7SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 168686d161a7SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 168786d161a7SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 168886d161a7SShri Abhyankar } 168986d161a7SShri Abhyankar 169086d161a7SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 169186d161a7SShri Abhyankar ierr = PetscMemzero(offlens,m*sizeof(PetscInt));CHKERRQ(ierr); 169286d161a7SShri Abhyankar jj = 0; 169386d161a7SShri Abhyankar for (i=0; i<m; i++) { 169486d161a7SShri Abhyankar for (j=0; j<ourlens[i]; j++) { 169586d161a7SShri Abhyankar if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++; 169686d161a7SShri Abhyankar jj++; 169786d161a7SShri Abhyankar } 169886d161a7SShri Abhyankar } 169986d161a7SShri Abhyankar 170086d161a7SShri Abhyankar /* create our matrix */ 17012205254eSKarl Rupp for (i=0; i<m; i++) ourlens[i] -= offlens[i]; 170286d161a7SShri Abhyankar 170386d161a7SShri Abhyankar if (!sizesset) { 170486d161a7SShri Abhyankar ierr = MatSetSizes(newmat,m,PETSC_DECIDE,M,N);CHKERRQ(ierr); 170586d161a7SShri Abhyankar } 1706dfdea288SBarry Smith a = (Mat_MPIDense*)newmat->data; 1707*2e3566b0SBarry Smith if (!a->A || !((Mat_SeqDense*)(a->A->data))->user_alloc) { 17080298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 1709dfdea288SBarry Smith } 17102205254eSKarl Rupp for (i=0; i<m; i++) ourlens[i] += offlens[i]; 171186d161a7SShri Abhyankar 171286d161a7SShri Abhyankar if (!rank) { 1713785e854fSJed Brown ierr = PetscMalloc1(maxnz,&vals);CHKERRQ(ierr); 171486d161a7SShri Abhyankar 171586d161a7SShri Abhyankar /* read in my part of the matrix numerical values */ 171686d161a7SShri Abhyankar nz = procsnz[0]; 171786d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 171886d161a7SShri Abhyankar 171986d161a7SShri Abhyankar /* insert into matrix */ 172086d161a7SShri Abhyankar jj = rstart; 172186d161a7SShri Abhyankar smycols = mycols; 172286d161a7SShri Abhyankar svals = vals; 172386d161a7SShri Abhyankar for (i=0; i<m; i++) { 172486d161a7SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 172586d161a7SShri Abhyankar smycols += ourlens[i]; 172686d161a7SShri Abhyankar svals += ourlens[i]; 172786d161a7SShri Abhyankar jj++; 172886d161a7SShri Abhyankar } 172986d161a7SShri Abhyankar 173086d161a7SShri Abhyankar /* read in other processors and ship out */ 173186d161a7SShri Abhyankar for (i=1; i<size; i++) { 173286d161a7SShri Abhyankar nz = procsnz[i]; 173386d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 173486d161a7SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 173586d161a7SShri Abhyankar } 173686d161a7SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 173786d161a7SShri Abhyankar } else { 173886d161a7SShri Abhyankar /* receive numeric values */ 1739854ce69bSBarry Smith ierr = PetscMalloc1(nz+1,&vals);CHKERRQ(ierr); 174086d161a7SShri Abhyankar 174186d161a7SShri Abhyankar /* receive message of values*/ 174286d161a7SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 174386d161a7SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 174486d161a7SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 174586d161a7SShri Abhyankar 174686d161a7SShri Abhyankar /* insert into matrix */ 174786d161a7SShri Abhyankar jj = rstart; 174886d161a7SShri Abhyankar smycols = mycols; 174986d161a7SShri Abhyankar svals = vals; 175086d161a7SShri Abhyankar for (i=0; i<m; i++) { 175186d161a7SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 175286d161a7SShri Abhyankar smycols += ourlens[i]; 175386d161a7SShri Abhyankar svals += ourlens[i]; 175486d161a7SShri Abhyankar jj++; 175586d161a7SShri Abhyankar } 175686d161a7SShri Abhyankar } 175786d161a7SShri Abhyankar ierr = PetscFree2(ourlens,offlens);CHKERRQ(ierr); 175886d161a7SShri Abhyankar ierr = PetscFree(vals);CHKERRQ(ierr); 175986d161a7SShri Abhyankar ierr = PetscFree(mycols);CHKERRQ(ierr); 176086d161a7SShri Abhyankar ierr = PetscFree(rowners);CHKERRQ(ierr); 176186d161a7SShri Abhyankar 176286d161a7SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 176386d161a7SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 176486d161a7SShri Abhyankar PetscFunctionReturn(0); 176586d161a7SShri Abhyankar } 176686d161a7SShri Abhyankar 176786d161a7SShri Abhyankar #undef __FUNCT__ 17686e4ee0c6SHong Zhang #define __FUNCT__ "MatEqual_MPIDense" 1769ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool *flag) 17706e4ee0c6SHong Zhang { 17716e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 17726e4ee0c6SHong Zhang Mat a,b; 1773ace3abfcSBarry Smith PetscBool flg; 17746e4ee0c6SHong Zhang PetscErrorCode ierr; 177590ace30eSBarry Smith 17766e4ee0c6SHong Zhang PetscFunctionBegin; 17776e4ee0c6SHong Zhang a = matA->A; 17786e4ee0c6SHong Zhang b = matB->A; 17796e4ee0c6SHong Zhang ierr = MatEqual(a,b,&flg);CHKERRQ(ierr); 1780ce94432eSBarry Smith ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 17816e4ee0c6SHong Zhang PetscFunctionReturn(0); 17826e4ee0c6SHong Zhang } 178390ace30eSBarry Smith 1784