1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 4ed3cc1f0SBarry Smith */ 5ed3cc1f0SBarry Smith 604fea9ffSBarry Smith 7c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 88949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 9baa3c1c6SHong Zhang #include <petscblaslapack.h> 108965ea79SLois Curfman McInnes 11ab92ecdeSBarry Smith /*@ 12ab92ecdeSBarry Smith 13ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 14ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 15ab92ecdeSBarry Smith 16ab92ecdeSBarry Smith Input Parameter: 17ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 18ab92ecdeSBarry Smith 19ab92ecdeSBarry Smith Output Parameter: 20ab92ecdeSBarry Smith . B - the inner matrix 21ab92ecdeSBarry Smith 228e6c10adSSatish Balay Level: intermediate 238e6c10adSSatish Balay 24ab92ecdeSBarry Smith @*/ 25ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 26ab92ecdeSBarry Smith { 27ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 28ab92ecdeSBarry Smith PetscErrorCode ierr; 29ace3abfcSBarry Smith PetscBool flg; 30ab92ecdeSBarry Smith 31ab92ecdeSBarry Smith PetscFunctionBegin; 32251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr); 332205254eSKarl Rupp if (flg) *B = mat->A; 342205254eSKarl Rupp else *B = A; 35ab92ecdeSBarry Smith PetscFunctionReturn(0); 36ab92ecdeSBarry Smith } 37ab92ecdeSBarry Smith 38ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 39ba8c8a56SBarry Smith { 40ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 41ba8c8a56SBarry Smith PetscErrorCode ierr; 42d0f46423SBarry Smith PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 43ba8c8a56SBarry Smith 44ba8c8a56SBarry Smith PetscFunctionBegin; 45e7e72b3dSBarry Smith if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 46ba8c8a56SBarry Smith lrow = row - rstart; 47ba8c8a56SBarry Smith ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr); 48ba8c8a56SBarry Smith PetscFunctionReturn(0); 49ba8c8a56SBarry Smith } 50ba8c8a56SBarry Smith 51ba8c8a56SBarry Smith PetscErrorCode MatRestoreRow_MPIDense(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 52ba8c8a56SBarry Smith { 53ba8c8a56SBarry Smith PetscErrorCode ierr; 54ba8c8a56SBarry Smith 55ba8c8a56SBarry Smith PetscFunctionBegin; 56ba8c8a56SBarry Smith if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);} 57ba8c8a56SBarry Smith if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);} 58ba8c8a56SBarry Smith PetscFunctionReturn(0); 59ba8c8a56SBarry Smith } 60ba8c8a56SBarry Smith 6111bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A,Mat *a) 620de54da6SSatish Balay { 630de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 646849ba73SBarry Smith PetscErrorCode ierr; 65d0f46423SBarry Smith PetscInt m = A->rmap->n,rstart = A->rmap->rstart; 6687828ca2SBarry Smith PetscScalar *array; 670de54da6SSatish Balay MPI_Comm comm; 6811bd1e4dSLisandro Dalcin Mat B; 690de54da6SSatish Balay 700de54da6SSatish Balay PetscFunctionBegin; 71e32f2f54SBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported."); 720de54da6SSatish Balay 7311bd1e4dSLisandro Dalcin ierr = PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B);CHKERRQ(ierr); 7411bd1e4dSLisandro Dalcin if (!B) { 750de54da6SSatish Balay ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr); 7611bd1e4dSLisandro Dalcin ierr = MatCreate(comm,&B);CHKERRQ(ierr); 7711bd1e4dSLisandro Dalcin ierr = MatSetSizes(B,m,m,m,m);CHKERRQ(ierr); 7811bd1e4dSLisandro Dalcin ierr = MatSetType(B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr); 798c778c55SBarry Smith ierr = MatDenseGetArray(mdn->A,&array);CHKERRQ(ierr); 8011bd1e4dSLisandro Dalcin ierr = MatSeqDenseSetPreallocation(B,array+m*rstart);CHKERRQ(ierr); 818c778c55SBarry Smith ierr = MatDenseRestoreArray(mdn->A,&array);CHKERRQ(ierr); 8211bd1e4dSLisandro Dalcin ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 8311bd1e4dSLisandro Dalcin ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 8411bd1e4dSLisandro Dalcin ierr = PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B);CHKERRQ(ierr); 8511bd1e4dSLisandro Dalcin *a = B; 8611bd1e4dSLisandro Dalcin ierr = MatDestroy(&B);CHKERRQ(ierr); 872205254eSKarl Rupp } else *a = B; 880de54da6SSatish Balay PetscFunctionReturn(0); 890de54da6SSatish Balay } 900de54da6SSatish Balay 9113f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 928965ea79SLois Curfman McInnes { 9339b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 94dfbe8321SBarry Smith PetscErrorCode ierr; 95d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 96ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 978965ea79SLois Curfman McInnes 983a40ed3dSBarry Smith PetscFunctionBegin; 998965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1005ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 101e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1028965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1038965ea79SLois Curfman McInnes row = idxm[i] - rstart; 10439b7565bSBarry Smith if (roworiented) { 10539b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr); 1063a40ed3dSBarry Smith } else { 1078965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1085ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 109e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 11039b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr); 11139b7565bSBarry Smith } 1128965ea79SLois Curfman McInnes } 1132205254eSKarl Rupp } else if (!A->donotstash) { 1145080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 11539b7565bSBarry Smith if (roworiented) { 116b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 117d36fbae8SSatish Balay } else { 118b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 11939b7565bSBarry Smith } 120b49de8d1SLois Curfman McInnes } 121b49de8d1SLois Curfman McInnes } 1223a40ed3dSBarry Smith PetscFunctionReturn(0); 123b49de8d1SLois Curfman McInnes } 124b49de8d1SLois Curfman McInnes 12513f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 126b49de8d1SLois Curfman McInnes { 127b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 128dfbe8321SBarry Smith PetscErrorCode ierr; 129d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 130b49de8d1SLois Curfman McInnes 1313a40ed3dSBarry Smith PetscFunctionBegin; 132b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 133e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */ 134e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 135b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 136b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 137b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 138e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */ 139e7e72b3dSBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 140b49de8d1SLois Curfman McInnes ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr); 141b49de8d1SLois Curfman McInnes } 142e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 1438965ea79SLois Curfman McInnes } 1443a40ed3dSBarry Smith PetscFunctionReturn(0); 1458965ea79SLois Curfman McInnes } 1468965ea79SLois Curfman McInnes 147d3042a70SBarry Smith static PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar *array[]) 148ff14e315SSatish Balay { 149ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 150dfbe8321SBarry Smith PetscErrorCode ierr; 151ff14e315SSatish Balay 1523a40ed3dSBarry Smith PetscFunctionBegin; 1538c778c55SBarry Smith ierr = MatDenseGetArray(a->A,array);CHKERRQ(ierr); 1543a40ed3dSBarry Smith PetscFunctionReturn(0); 155ff14e315SSatish Balay } 156ff14e315SSatish Balay 1578572280aSBarry Smith static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A,const PetscScalar *array[]) 1588572280aSBarry Smith { 1598572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1608572280aSBarry Smith PetscErrorCode ierr; 1618572280aSBarry Smith 1628572280aSBarry Smith PetscFunctionBegin; 1638572280aSBarry Smith ierr = MatDenseGetArrayRead(a->A,array);CHKERRQ(ierr); 1648572280aSBarry Smith PetscFunctionReturn(0); 1658572280aSBarry Smith } 1668572280aSBarry Smith 167d3042a70SBarry Smith static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A,const PetscScalar array[]) 168d3042a70SBarry Smith { 169d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 170d3042a70SBarry Smith PetscErrorCode ierr; 171d3042a70SBarry Smith 172d3042a70SBarry Smith PetscFunctionBegin; 173d3042a70SBarry Smith ierr = MatDensePlaceArray(a->A,array);CHKERRQ(ierr); 174d3042a70SBarry Smith PetscFunctionReturn(0); 175d3042a70SBarry Smith } 176d3042a70SBarry Smith 177d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_MPIDense(Mat A) 178d3042a70SBarry Smith { 179d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 180d3042a70SBarry Smith PetscErrorCode ierr; 181d3042a70SBarry Smith 182d3042a70SBarry Smith PetscFunctionBegin; 183d3042a70SBarry Smith ierr = MatDenseResetArray(a->A);CHKERRQ(ierr); 184d3042a70SBarry Smith PetscFunctionReturn(0); 185d3042a70SBarry Smith } 186d3042a70SBarry Smith 1877dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B) 188ca3fa75bSLois Curfman McInnes { 189ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 190ca3fa75bSLois Curfman McInnes Mat_SeqDense *lmat = (Mat_SeqDense*)mat->A->data; 1916849ba73SBarry Smith PetscErrorCode ierr; 1924aa3045dSJed Brown PetscInt i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols; 1935d0c19d7SBarry Smith const PetscInt *irow,*icol; 19487828ca2SBarry Smith PetscScalar *av,*bv,*v = lmat->v; 195ca3fa75bSLois Curfman McInnes Mat newmat; 1964aa3045dSJed Brown IS iscol_local; 19742a884f0SBarry Smith MPI_Comm comm_is,comm_mat; 198ca3fa75bSLois Curfman McInnes 199ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 20042a884f0SBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm_mat);CHKERRQ(ierr); 20142a884f0SBarry Smith ierr = PetscObjectGetComm((PetscObject)iscol,&comm_is);CHKERRQ(ierr); 20242a884f0SBarry Smith if (comm_mat != comm_is) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"IS communicator must match matrix communicator"); 20342a884f0SBarry Smith 2044aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 205ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 2064aa3045dSJed Brown ierr = ISGetIndices(iscol_local,&icol);CHKERRQ(ierr); 207b9b97703SBarry Smith ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 208b9b97703SBarry Smith ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 2094aa3045dSJed Brown ierr = ISGetSize(iscol,&Ncols);CHKERRQ(ierr); /* global number of columns, size of iscol_local */ 210ca3fa75bSLois Curfman McInnes 211ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 2127eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 2137eba5e9cSLois Curfman McInnes original matrix! */ 214ca3fa75bSLois Curfman McInnes 215ca3fa75bSLois Curfman McInnes ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr); 2167eba5e9cSLois Curfman McInnes ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 217ca3fa75bSLois Curfman McInnes 218ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 219ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 220e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 2217eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 222ca3fa75bSLois Curfman McInnes newmat = *B; 223ca3fa75bSLois Curfman McInnes } else { 224ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 225ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr); 2264aa3045dSJed Brown ierr = MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols);CHKERRQ(ierr); 2277adad957SLisandro Dalcin ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 2280298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 229ca3fa75bSLois Curfman McInnes } 230ca3fa75bSLois Curfman McInnes 231ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 232ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 233ca3fa75bSLois Curfman McInnes bv = ((Mat_SeqDense*)newmatd->A->data)->v; 234ca3fa75bSLois Curfman McInnes 2354aa3045dSJed Brown for (i=0; i<Ncols; i++) { 23625a33276SHong Zhang av = v + ((Mat_SeqDense*)mat->A->data)->lda*icol[i]; 237ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 2387eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 239ca3fa75bSLois Curfman McInnes } 240ca3fa75bSLois Curfman McInnes } 241ca3fa75bSLois Curfman McInnes 242ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 243ca3fa75bSLois Curfman McInnes ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 244ca3fa75bSLois Curfman McInnes ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 245ca3fa75bSLois Curfman McInnes 246ca3fa75bSLois Curfman McInnes /* Free work space */ 247ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 2485bdf786aSShri Abhyankar ierr = ISRestoreIndices(iscol_local,&icol);CHKERRQ(ierr); 24932bb1f2dSLisandro Dalcin ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 250ca3fa75bSLois Curfman McInnes *B = newmat; 251ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 252ca3fa75bSLois Curfman McInnes } 253ca3fa75bSLois Curfman McInnes 2548c778c55SBarry Smith PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar *array[]) 255ff14e315SSatish Balay { 25673a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 25773a71a0fSBarry Smith PetscErrorCode ierr; 25873a71a0fSBarry Smith 2593a40ed3dSBarry Smith PetscFunctionBegin; 2608c778c55SBarry Smith ierr = MatDenseRestoreArray(a->A,array);CHKERRQ(ierr); 2613a40ed3dSBarry Smith PetscFunctionReturn(0); 262ff14e315SSatish Balay } 263ff14e315SSatish Balay 2648572280aSBarry Smith PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A,const PetscScalar *array[]) 2658572280aSBarry Smith { 2668572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2678572280aSBarry Smith PetscErrorCode ierr; 2688572280aSBarry Smith 2698572280aSBarry Smith PetscFunctionBegin; 2708572280aSBarry Smith ierr = MatDenseRestoreArrayRead(a->A,array);CHKERRQ(ierr); 2718572280aSBarry Smith PetscFunctionReturn(0); 2728572280aSBarry Smith } 2738572280aSBarry Smith 274dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 2758965ea79SLois Curfman McInnes { 27639ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 277ce94432eSBarry Smith MPI_Comm comm; 278dfbe8321SBarry Smith PetscErrorCode ierr; 27913f74950SBarry Smith PetscInt nstash,reallocs; 2808965ea79SLois Curfman McInnes InsertMode addv; 2818965ea79SLois Curfman McInnes 2823a40ed3dSBarry Smith PetscFunctionBegin; 283ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr); 2848965ea79SLois Curfman McInnes /* make sure all processors are either in INSERTMODE or ADDMODE */ 285b2566f29SBarry Smith ierr = MPIU_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,comm);CHKERRQ(ierr); 286ce94432eSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Cannot mix adds/inserts on different procs"); 287e0fa3b82SLois Curfman McInnes mat->insertmode = addv; /* in case this processor had no cache */ 2888965ea79SLois Curfman McInnes 289d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 2908798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 291ae15b995SBarry Smith ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 2923a40ed3dSBarry Smith PetscFunctionReturn(0); 2938965ea79SLois Curfman McInnes } 2948965ea79SLois Curfman McInnes 295dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 2968965ea79SLois Curfman McInnes { 29739ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 2986849ba73SBarry Smith PetscErrorCode ierr; 29913f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 30013f74950SBarry Smith PetscMPIInt n; 30187828ca2SBarry Smith PetscScalar *val; 3028965ea79SLois Curfman McInnes 3033a40ed3dSBarry Smith PetscFunctionBegin; 3048965ea79SLois Curfman McInnes /* wait on receives */ 3057ef1d9bdSSatish Balay while (1) { 3068798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 3077ef1d9bdSSatish Balay if (!flg) break; 3088965ea79SLois Curfman McInnes 3097ef1d9bdSSatish Balay for (i=0; i<n;) { 3107ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 3112205254eSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 3122205254eSKarl Rupp if (row[j] != rstart) break; 3132205254eSKarl Rupp } 3147ef1d9bdSSatish Balay if (j < n) ncols = j-i; 3157ef1d9bdSSatish Balay else ncols = n-i; 3167ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 3174b4eb8d3SJed Brown ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 3187ef1d9bdSSatish Balay i = j; 3198965ea79SLois Curfman McInnes } 3207ef1d9bdSSatish Balay } 3218798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 3228965ea79SLois Curfman McInnes 32339ddd567SLois Curfman McInnes ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr); 32439ddd567SLois Curfman McInnes ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr); 3258965ea79SLois Curfman McInnes 3266d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 32739ddd567SLois Curfman McInnes ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 3288965ea79SLois Curfman McInnes } 3293a40ed3dSBarry Smith PetscFunctionReturn(0); 3308965ea79SLois Curfman McInnes } 3318965ea79SLois Curfman McInnes 332dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 3338965ea79SLois Curfman McInnes { 334dfbe8321SBarry Smith PetscErrorCode ierr; 33539ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3363a40ed3dSBarry Smith 3373a40ed3dSBarry Smith PetscFunctionBegin; 3383a40ed3dSBarry Smith ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 3393a40ed3dSBarry Smith PetscFunctionReturn(0); 3408965ea79SLois Curfman McInnes } 3418965ea79SLois Curfman McInnes 3428965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the 3438965ea79SLois Curfman McInnes matrix is square and the column and row owerships are identical. 3448965ea79SLois Curfman McInnes This is a BUG. The only way to fix it seems to be to access 3453501a2bdSLois Curfman McInnes mdn->A and mdn->B directly and not through the MatZeroRows() 3468965ea79SLois Curfman McInnes routine. 3478965ea79SLois Curfman McInnes */ 3482b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 3498965ea79SLois Curfman McInnes { 35039ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3516849ba73SBarry Smith PetscErrorCode ierr; 352d0f46423SBarry Smith PetscInt i,*owners = A->rmap->range; 35376ec1555SBarry Smith PetscInt *sizes,j,idx,nsends; 35413f74950SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 3557adad957SLisandro Dalcin PetscInt *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source; 35613f74950SBarry Smith PetscInt *lens,*lrows,*values; 35713f74950SBarry Smith PetscMPIInt n,imdex,rank = l->rank,size = l->size; 358ce94432eSBarry Smith MPI_Comm comm; 3598965ea79SLois Curfman McInnes MPI_Request *send_waits,*recv_waits; 3608965ea79SLois Curfman McInnes MPI_Status recv_status,*send_status; 361ace3abfcSBarry Smith PetscBool found; 36297b48c8fSBarry Smith const PetscScalar *xx; 36397b48c8fSBarry Smith PetscScalar *bb; 3648965ea79SLois Curfman McInnes 3653a40ed3dSBarry Smith PetscFunctionBegin; 366ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 367ce94432eSBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(comm,PETSC_ERR_SUP,"Only handles square matrices"); 368b9679d65SBarry Smith if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only handles matrices with identical column and row ownership"); 3698965ea79SLois Curfman McInnes /* first count number of contributors to each processor */ 370f628708eSJed Brown ierr = PetscCalloc1(2*size,&sizes);CHKERRQ(ierr); 371037dbc42SBarry Smith ierr = PetscMalloc1(N+1,&owner);CHKERRQ(ierr); /* see note*/ 3728965ea79SLois Curfman McInnes for (i=0; i<N; i++) { 3738965ea79SLois Curfman McInnes idx = rows[i]; 37435d8aa7fSBarry Smith found = PETSC_FALSE; 3758965ea79SLois Curfman McInnes for (j=0; j<size; j++) { 3768965ea79SLois Curfman McInnes if (idx >= owners[j] && idx < owners[j+1]) { 37776ec1555SBarry Smith sizes[2*j]++; sizes[2*j+1] = 1; owner[i] = j; found = PETSC_TRUE; break; 3788965ea79SLois Curfman McInnes } 3798965ea79SLois Curfman McInnes } 380e32f2f54SBarry Smith if (!found) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 3818965ea79SLois Curfman McInnes } 3822205254eSKarl Rupp nsends = 0; 38376ec1555SBarry Smith for (i=0; i<size; i++) nsends += sizes[2*i+1]; 3848965ea79SLois Curfman McInnes 3858965ea79SLois Curfman McInnes /* inform other processors of number of messages and max length*/ 38676ec1555SBarry Smith ierr = PetscMaxSum(comm,sizes,&nmax,&nrecvs);CHKERRQ(ierr); 3878965ea79SLois Curfman McInnes 3888965ea79SLois Curfman McInnes /* post receives: */ 389785e854fSJed Brown ierr = PetscMalloc1((nrecvs+1)*(nmax+1),&rvalues);CHKERRQ(ierr); 390854ce69bSBarry Smith ierr = PetscMalloc1(nrecvs+1,&recv_waits);CHKERRQ(ierr); 3918965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 39213f74950SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 3938965ea79SLois Curfman McInnes } 3948965ea79SLois Curfman McInnes 3958965ea79SLois Curfman McInnes /* do sends: 3968965ea79SLois Curfman McInnes 1) starts[i] gives the starting index in svalues for stuff going to 3978965ea79SLois Curfman McInnes the ith processor 3988965ea79SLois Curfman McInnes */ 399854ce69bSBarry Smith ierr = PetscMalloc1(N+1,&svalues);CHKERRQ(ierr); 400854ce69bSBarry Smith ierr = PetscMalloc1(nsends+1,&send_waits);CHKERRQ(ierr); 401854ce69bSBarry Smith ierr = PetscMalloc1(size+1,&starts);CHKERRQ(ierr); 4028965ea79SLois Curfman McInnes 4038965ea79SLois Curfman McInnes starts[0] = 0; 40476ec1555SBarry Smith for (i=1; i<size; i++) starts[i] = starts[i-1] + sizes[2*i-2]; 4052205254eSKarl Rupp for (i=0; i<N; i++) svalues[starts[owner[i]]++] = rows[i]; 4062205254eSKarl Rupp 4072205254eSKarl Rupp starts[0] = 0; 40876ec1555SBarry Smith for (i=1; i<size+1; i++) starts[i] = starts[i-1] + sizes[2*i-2]; 4098965ea79SLois Curfman McInnes count = 0; 4108965ea79SLois Curfman McInnes for (i=0; i<size; i++) { 41176ec1555SBarry Smith if (sizes[2*i+1]) { 41276ec1555SBarry Smith ierr = MPI_Isend(svalues+starts[i],sizes[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 4138965ea79SLois Curfman McInnes } 4148965ea79SLois Curfman McInnes } 415606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 4168965ea79SLois Curfman McInnes 4178965ea79SLois Curfman McInnes base = owners[rank]; 4188965ea79SLois Curfman McInnes 4198965ea79SLois Curfman McInnes /* wait on receives */ 420dcca6d9dSJed Brown ierr = PetscMalloc2(nrecvs,&lens,nrecvs,&source);CHKERRQ(ierr); 42174ed9c26SBarry Smith count = nrecvs; 42274ed9c26SBarry Smith slen = 0; 4238965ea79SLois Curfman McInnes while (count) { 424ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 4258965ea79SLois Curfman McInnes /* unpack receives into our local space */ 42613f74950SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 4272205254eSKarl Rupp 4288965ea79SLois Curfman McInnes source[imdex] = recv_status.MPI_SOURCE; 4298965ea79SLois Curfman McInnes lens[imdex] = n; 4308965ea79SLois Curfman McInnes slen += n; 4318965ea79SLois Curfman McInnes count--; 4328965ea79SLois Curfman McInnes } 433606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 4348965ea79SLois Curfman McInnes 4358965ea79SLois Curfman McInnes /* move the data into the send scatter */ 436854ce69bSBarry Smith ierr = PetscMalloc1(slen+1,&lrows);CHKERRQ(ierr); 4378965ea79SLois Curfman McInnes count = 0; 4388965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 4398965ea79SLois Curfman McInnes values = rvalues + i*nmax; 4408965ea79SLois Curfman McInnes for (j=0; j<lens[i]; j++) { 4418965ea79SLois Curfman McInnes lrows[count++] = values[j] - base; 4428965ea79SLois Curfman McInnes } 4438965ea79SLois Curfman McInnes } 444606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 44574ed9c26SBarry Smith ierr = PetscFree2(lens,source);CHKERRQ(ierr); 446606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 44776ec1555SBarry Smith ierr = PetscFree(sizes);CHKERRQ(ierr); 4488965ea79SLois Curfman McInnes 44997b48c8fSBarry Smith /* fix right hand side if needed */ 45097b48c8fSBarry Smith if (x && b) { 45197b48c8fSBarry Smith ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr); 45297b48c8fSBarry Smith ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 45397b48c8fSBarry Smith for (i=0; i<slen; i++) { 45497b48c8fSBarry Smith bb[lrows[i]] = diag*xx[lrows[i]]; 45597b48c8fSBarry Smith } 45697b48c8fSBarry Smith ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr); 45797b48c8fSBarry Smith ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 45897b48c8fSBarry Smith } 45997b48c8fSBarry Smith 4608965ea79SLois Curfman McInnes /* actually zap the local rows */ 461b9679d65SBarry Smith ierr = MatZeroRows(l->A,slen,lrows,0.0,0,0);CHKERRQ(ierr); 462e2eb51b1SBarry Smith if (diag != 0.0) { 463b9679d65SBarry Smith Mat_SeqDense *ll = (Mat_SeqDense*)l->A->data; 464b9679d65SBarry Smith PetscInt m = ll->lda, i; 465b9679d65SBarry Smith 466b9679d65SBarry Smith for (i=0; i<slen; i++) { 467b9679d65SBarry Smith ll->v[lrows[i] + m*(A->cmap->rstart + lrows[i])] = diag; 468b9679d65SBarry Smith } 469b9679d65SBarry Smith } 470606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 4718965ea79SLois Curfman McInnes 4728965ea79SLois Curfman McInnes /* wait on sends */ 4738965ea79SLois Curfman McInnes if (nsends) { 474785e854fSJed Brown ierr = PetscMalloc1(nsends,&send_status);CHKERRQ(ierr); 475ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 476606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 4778965ea79SLois Curfman McInnes } 478606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 479606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 4803a40ed3dSBarry Smith PetscFunctionReturn(0); 4818965ea79SLois Curfman McInnes } 4828965ea79SLois Curfman McInnes 483cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec); 484cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec); 485cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec); 486cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec); 487cc2e6a90SBarry Smith 488dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4898965ea79SLois Curfman McInnes { 49039ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 491dfbe8321SBarry Smith PetscErrorCode ierr; 492c456f294SBarry Smith 4933a40ed3dSBarry Smith PetscFunctionBegin; 494ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 495ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 496cc2e6a90SBarry Smith ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy);CHKERRQ(ierr); 4973a40ed3dSBarry Smith PetscFunctionReturn(0); 4988965ea79SLois Curfman McInnes } 4998965ea79SLois Curfman McInnes 500dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 5018965ea79SLois Curfman McInnes { 50239ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 503dfbe8321SBarry Smith PetscErrorCode ierr; 504c456f294SBarry Smith 5053a40ed3dSBarry Smith PetscFunctionBegin; 506ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 507ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 508cc2e6a90SBarry Smith ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr); 5093a40ed3dSBarry Smith PetscFunctionReturn(0); 5108965ea79SLois Curfman McInnes } 5118965ea79SLois Curfman McInnes 512dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 513096963f5SLois Curfman McInnes { 514096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 515dfbe8321SBarry Smith PetscErrorCode ierr; 51687828ca2SBarry Smith PetscScalar zero = 0.0; 517096963f5SLois Curfman McInnes 5183a40ed3dSBarry Smith PetscFunctionBegin; 5192dcb1b2aSMatthew Knepley ierr = VecSet(yy,zero);CHKERRQ(ierr); 520cc2e6a90SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 521ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 522ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 5233a40ed3dSBarry Smith PetscFunctionReturn(0); 524096963f5SLois Curfman McInnes } 525096963f5SLois Curfman McInnes 526dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 527096963f5SLois Curfman McInnes { 528096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 529dfbe8321SBarry Smith PetscErrorCode ierr; 530096963f5SLois Curfman McInnes 5313a40ed3dSBarry Smith PetscFunctionBegin; 5323501a2bdSLois Curfman McInnes ierr = VecCopy(yy,zz);CHKERRQ(ierr); 533cc2e6a90SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 534ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 535ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 5363a40ed3dSBarry Smith PetscFunctionReturn(0); 537096963f5SLois Curfman McInnes } 538096963f5SLois Curfman McInnes 539dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5408965ea79SLois Curfman McInnes { 54139ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 542096963f5SLois Curfman McInnes Mat_SeqDense *aloc = (Mat_SeqDense*)a->A->data; 543dfbe8321SBarry Smith PetscErrorCode ierr; 544d0f46423SBarry Smith PetscInt len,i,n,m = A->rmap->n,radd; 54587828ca2SBarry Smith PetscScalar *x,zero = 0.0; 546ed3cc1f0SBarry Smith 5473a40ed3dSBarry Smith PetscFunctionBegin; 5482dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 5491ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 550096963f5SLois Curfman McInnes ierr = VecGetSize(v,&n);CHKERRQ(ierr); 551e32f2f54SBarry Smith if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 552d0f46423SBarry Smith len = PetscMin(a->A->rmap->n,a->A->cmap->n); 553d0f46423SBarry Smith radd = A->rmap->rstart*m; 55444cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 555096963f5SLois Curfman McInnes x[i] = aloc->v[radd + i*m + i]; 556096963f5SLois Curfman McInnes } 5571ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 5583a40ed3dSBarry Smith PetscFunctionReturn(0); 5598965ea79SLois Curfman McInnes } 5608965ea79SLois Curfman McInnes 561dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5628965ea79SLois Curfman McInnes { 5633501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 564dfbe8321SBarry Smith PetscErrorCode ierr; 565ed3cc1f0SBarry Smith 5663a40ed3dSBarry Smith PetscFunctionBegin; 567aa482453SBarry Smith #if defined(PETSC_USE_LOG) 568d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N); 5698965ea79SLois Curfman McInnes #endif 5708798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 5716bf464f9SBarry Smith ierr = MatDestroy(&mdn->A);CHKERRQ(ierr); 5726bf464f9SBarry Smith ierr = VecDestroy(&mdn->lvec);CHKERRQ(ierr); 5736bf464f9SBarry Smith ierr = VecScatterDestroy(&mdn->Mvctx);CHKERRQ(ierr); 57401b82886SBarry Smith 575bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 576dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 5778baccfbdSHong Zhang 5788baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr); 5798572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr); 5808572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL);CHKERRQ(ierr); 5818572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL);CHKERRQ(ierr); 582d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL);CHKERRQ(ierr); 583d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL);CHKERRQ(ierr); 5848baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 5858baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL);CHKERRQ(ierr); 5868baccfbdSHong Zhang #endif 587bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL);CHKERRQ(ierr); 588bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 589bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 590bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5918baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMult_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5928baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5938baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 59486aefd0dSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL);CHKERRQ(ierr); 59586aefd0dSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL);CHKERRQ(ierr); 5963a40ed3dSBarry Smith PetscFunctionReturn(0); 5978965ea79SLois Curfman McInnes } 59839ddd567SLois Curfman McInnes 5996849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_Binary(Mat mat,PetscViewer viewer) 6008965ea79SLois Curfman McInnes { 60139ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 602dfbe8321SBarry Smith PetscErrorCode ierr; 603aa05aa95SBarry Smith PetscViewerFormat format; 604aa05aa95SBarry Smith int fd; 605d0f46423SBarry Smith PetscInt header[4],mmax,N = mat->cmap->N,i,j,m,k; 606aa05aa95SBarry Smith PetscMPIInt rank,tag = ((PetscObject)viewer)->tag,size; 607578230a0SSatish Balay PetscScalar *work,*v,*vv; 608aa05aa95SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)mdn->A->data; 6097056b6fcSBarry Smith 6103a40ed3dSBarry Smith PetscFunctionBegin; 61139ddd567SLois Curfman McInnes if (mdn->size == 1) { 61239ddd567SLois Curfman McInnes ierr = MatView(mdn->A,viewer);CHKERRQ(ierr); 613aa05aa95SBarry Smith } else { 614aa05aa95SBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 615ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 616ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr); 617aa05aa95SBarry Smith 618aa05aa95SBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 619f4403165SShri Abhyankar if (format == PETSC_VIEWER_NATIVE) { 620aa05aa95SBarry Smith 621aa05aa95SBarry Smith if (!rank) { 622aa05aa95SBarry Smith /* store the matrix as a dense matrix */ 6230700a824SBarry Smith header[0] = MAT_FILE_CLASSID; 624d0f46423SBarry Smith header[1] = mat->rmap->N; 625aa05aa95SBarry Smith header[2] = N; 626aa05aa95SBarry Smith header[3] = MATRIX_BINARY_FORMAT_DENSE; 627aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 628aa05aa95SBarry Smith 629aa05aa95SBarry Smith /* get largest work array needed for transposing array */ 630d0f46423SBarry Smith mmax = mat->rmap->n; 631aa05aa95SBarry Smith for (i=1; i<size; i++) { 632d0f46423SBarry Smith mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]); 6338965ea79SLois Curfman McInnes } 634785e854fSJed Brown ierr = PetscMalloc1(mmax*N,&work);CHKERRQ(ierr); 635aa05aa95SBarry Smith 636aa05aa95SBarry Smith /* write out local array, by rows */ 637d0f46423SBarry Smith m = mat->rmap->n; 638aa05aa95SBarry Smith v = a->v; 639aa05aa95SBarry Smith for (j=0; j<N; j++) { 640aa05aa95SBarry Smith for (i=0; i<m; i++) { 641578230a0SSatish Balay work[j + i*N] = *v++; 642aa05aa95SBarry Smith } 643aa05aa95SBarry Smith } 644aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 645aa05aa95SBarry Smith /* get largest work array to receive messages from other processes, excludes process zero */ 646aa05aa95SBarry Smith mmax = 0; 647aa05aa95SBarry Smith for (i=1; i<size; i++) { 648d0f46423SBarry Smith mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]); 649aa05aa95SBarry Smith } 650785e854fSJed Brown ierr = PetscMalloc1(mmax*N,&vv);CHKERRQ(ierr); 651aa05aa95SBarry Smith for (k = 1; k < size; k++) { 652f8009846SMatthew Knepley v = vv; 653d0f46423SBarry Smith m = mat->rmap->range[k+1] - mat->rmap->range[k]; 654ce94432eSBarry Smith ierr = MPIULong_Recv(v,m*N,MPIU_SCALAR,k,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 655aa05aa95SBarry Smith 656aa05aa95SBarry Smith for (j = 0; j < N; j++) { 657aa05aa95SBarry Smith for (i = 0; i < m; i++) { 658578230a0SSatish Balay work[j + i*N] = *v++; 659aa05aa95SBarry Smith } 660aa05aa95SBarry Smith } 661aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 662aa05aa95SBarry Smith } 663aa05aa95SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 664578230a0SSatish Balay ierr = PetscFree(vv);CHKERRQ(ierr); 665aa05aa95SBarry Smith } else { 666ce94432eSBarry Smith ierr = MPIULong_Send(a->v,mat->rmap->n*mat->cmap->N,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 667aa05aa95SBarry Smith } 6686a9046bcSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"To store a parallel dense matrix you must first call PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE)"); 669aa05aa95SBarry Smith } 6703a40ed3dSBarry Smith PetscFunctionReturn(0); 6718965ea79SLois Curfman McInnes } 6728965ea79SLois Curfman McInnes 6737da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqDense(Mat,PetscViewer); 6749804daf3SBarry Smith #include <petscdraw.h> 6756849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 6768965ea79SLois Curfman McInnes { 67739ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 678dfbe8321SBarry Smith PetscErrorCode ierr; 6797da1fb6eSBarry Smith PetscMPIInt rank = mdn->rank; 68019fd82e9SBarry Smith PetscViewerType vtype; 681ace3abfcSBarry Smith PetscBool iascii,isdraw; 682b0a32e0cSBarry Smith PetscViewer sviewer; 683f3ef73ceSBarry Smith PetscViewerFormat format; 6848965ea79SLois Curfman McInnes 6853a40ed3dSBarry Smith PetscFunctionBegin; 686251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 687251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 68832077d6dSBarry Smith if (iascii) { 689b0a32e0cSBarry Smith ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr); 690b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 691456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6924e220ebcSLois Curfman McInnes MatInfo info; 693888f2ed8SSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 6941575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 6957b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr); 696b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6971575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 6985d00a290SHong Zhang ierr = VecScatterView(mdn->Mvctx,viewer);CHKERRQ(ierr); 6993a40ed3dSBarry Smith PetscFunctionReturn(0); 700fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 7013a40ed3dSBarry Smith PetscFunctionReturn(0); 7028965ea79SLois Curfman McInnes } 703f1af5d2fSBarry Smith } else if (isdraw) { 704b0a32e0cSBarry Smith PetscDraw draw; 705ace3abfcSBarry Smith PetscBool isnull; 706f1af5d2fSBarry Smith 707b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 708b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 709f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 710f1af5d2fSBarry Smith } 71177ed5343SBarry Smith 7127da1fb6eSBarry Smith { 7138965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 7148965ea79SLois Curfman McInnes Mat A; 715d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz; 716ba8c8a56SBarry Smith PetscInt *cols; 717ba8c8a56SBarry Smith PetscScalar *vals; 7188965ea79SLois Curfman McInnes 719ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 7208965ea79SLois Curfman McInnes if (!rank) { 721f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 7223a40ed3dSBarry Smith } else { 723f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 7248965ea79SLois Curfman McInnes } 7257adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 726878740d9SKris Buschelman ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr); 7270298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr); 7283bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 7298965ea79SLois Curfman McInnes 73039ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 73139ddd567SLois Curfman McInnes but it's quick for now */ 73251022da4SBarry Smith A->insertmode = INSERT_VALUES; 7332205254eSKarl Rupp 7342205254eSKarl Rupp row = mat->rmap->rstart; 7352205254eSKarl Rupp m = mdn->A->rmap->n; 7368965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 737ba8c8a56SBarry Smith ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 738ba8c8a56SBarry Smith ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 739ba8c8a56SBarry Smith ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 74039ddd567SLois Curfman McInnes row++; 7418965ea79SLois Curfman McInnes } 7428965ea79SLois Curfman McInnes 7436d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7446d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7453f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 746b9b97703SBarry Smith if (!rank) { 7471a9d3c3cSBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 7487da1fb6eSBarry Smith ierr = MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr); 7498965ea79SLois Curfman McInnes } 7503f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 751b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 7526bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 7538965ea79SLois Curfman McInnes } 7543a40ed3dSBarry Smith PetscFunctionReturn(0); 7558965ea79SLois Curfman McInnes } 7568965ea79SLois Curfman McInnes 757dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 7588965ea79SLois Curfman McInnes { 759dfbe8321SBarry Smith PetscErrorCode ierr; 760ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw,issocket; 7618965ea79SLois Curfman McInnes 762433994e6SBarry Smith PetscFunctionBegin; 763251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 764251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 765251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 766251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 7670f5bd95cSBarry Smith 76832077d6dSBarry Smith if (iascii || issocket || isdraw) { 769f1af5d2fSBarry Smith ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 7700f5bd95cSBarry Smith } else if (isbinary) { 7713a40ed3dSBarry Smith ierr = MatView_MPIDense_Binary(mat,viewer);CHKERRQ(ierr); 77211aeaf0aSBarry Smith } 7733a40ed3dSBarry Smith PetscFunctionReturn(0); 7748965ea79SLois Curfman McInnes } 7758965ea79SLois Curfman McInnes 776dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 7778965ea79SLois Curfman McInnes { 7783501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7793501a2bdSLois Curfman McInnes Mat mdn = mat->A; 780dfbe8321SBarry Smith PetscErrorCode ierr; 781329f5518SBarry Smith PetscReal isend[5],irecv[5]; 7828965ea79SLois Curfman McInnes 7833a40ed3dSBarry Smith PetscFunctionBegin; 7844e220ebcSLois Curfman McInnes info->block_size = 1.0; 7852205254eSKarl Rupp 7864e220ebcSLois Curfman McInnes ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr); 7872205254eSKarl Rupp 7884e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 7894e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 7908965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7914e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7924e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7934e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7944e220ebcSLois Curfman McInnes info->memory = isend[3]; 7954e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7968965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 797b2566f29SBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 7982205254eSKarl Rupp 7994e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 8004e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 8014e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 8024e220ebcSLois Curfman McInnes info->memory = irecv[3]; 8034e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 8048965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 805b2566f29SBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 8062205254eSKarl Rupp 8074e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 8084e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 8094e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 8104e220ebcSLois Curfman McInnes info->memory = irecv[3]; 8114e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 8128965ea79SLois Curfman McInnes } 8134e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 8144e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 8154e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 8163a40ed3dSBarry Smith PetscFunctionReturn(0); 8178965ea79SLois Curfman McInnes } 8188965ea79SLois Curfman McInnes 819ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg) 8208965ea79SLois Curfman McInnes { 82139ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 822dfbe8321SBarry Smith PetscErrorCode ierr; 8238965ea79SLois Curfman McInnes 8243a40ed3dSBarry Smith PetscFunctionBegin; 82512c028f9SKris Buschelman switch (op) { 826512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 82712c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 82812c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 82943674050SBarry Smith MatCheckPreallocated(A,1); 8304e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 83112c028f9SKris Buschelman break; 83212c028f9SKris Buschelman case MAT_ROW_ORIENTED: 83343674050SBarry Smith MatCheckPreallocated(A,1); 8344e0d8c25SBarry Smith a->roworiented = flg; 8354e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 83612c028f9SKris Buschelman break; 8374e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 83813fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 83912c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 840290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 84112c028f9SKris Buschelman break; 84212c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 8434e0d8c25SBarry Smith a->donotstash = flg; 84412c028f9SKris Buschelman break; 84577e54ba9SKris Buschelman case MAT_SYMMETRIC: 84677e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 8479a4540c5SBarry Smith case MAT_HERMITIAN: 8489a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 849600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 850290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 85177e54ba9SKris Buschelman break; 85212c028f9SKris Buschelman default: 853e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 8543a40ed3dSBarry Smith } 8553a40ed3dSBarry Smith PetscFunctionReturn(0); 8568965ea79SLois Curfman McInnes } 8578965ea79SLois Curfman McInnes 8588965ea79SLois Curfman McInnes 859dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 8605b2fa520SLois Curfman McInnes { 8615b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 8625b2fa520SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 863bca11509SBarry Smith const PetscScalar *l,*r; 864bca11509SBarry Smith PetscScalar x,*v; 865dfbe8321SBarry Smith PetscErrorCode ierr; 866d0f46423SBarry Smith PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n; 8675b2fa520SLois Curfman McInnes 8685b2fa520SLois Curfman McInnes PetscFunctionBegin; 86972d926a5SLois Curfman McInnes ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr); 8705b2fa520SLois Curfman McInnes if (ll) { 87172d926a5SLois Curfman McInnes ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr); 872e32f2f54SBarry Smith if (s2a != s2) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %d != %d.", s2a, s2); 873bca11509SBarry Smith ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr); 8745b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 8755b2fa520SLois Curfman McInnes x = l[i]; 8765b2fa520SLois Curfman McInnes v = mat->v + i; 8775b2fa520SLois Curfman McInnes for (j=0; j<n; j++) { (*v) *= x; v+= m;} 8785b2fa520SLois Curfman McInnes } 879bca11509SBarry Smith ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr); 880efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 8815b2fa520SLois Curfman McInnes } 8825b2fa520SLois Curfman McInnes if (rr) { 883175be7b4SMatthew Knepley ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr); 884e32f2f54SBarry Smith if (s3a != s3) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3); 885ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 886ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 887bca11509SBarry Smith ierr = VecGetArrayRead(mdn->lvec,&r);CHKERRQ(ierr); 8885b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 8895b2fa520SLois Curfman McInnes x = r[i]; 8905b2fa520SLois Curfman McInnes v = mat->v + i*m; 8912205254eSKarl Rupp for (j=0; j<m; j++) (*v++) *= x; 8925b2fa520SLois Curfman McInnes } 893bca11509SBarry Smith ierr = VecRestoreArrayRead(mdn->lvec,&r);CHKERRQ(ierr); 894efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 8955b2fa520SLois Curfman McInnes } 8965b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8975b2fa520SLois Curfman McInnes } 8985b2fa520SLois Curfman McInnes 899dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 900096963f5SLois Curfman McInnes { 9013501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 9023501a2bdSLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 903dfbe8321SBarry Smith PetscErrorCode ierr; 90413f74950SBarry Smith PetscInt i,j; 905329f5518SBarry Smith PetscReal sum = 0.0; 90687828ca2SBarry Smith PetscScalar *v = mat->v; 9073501a2bdSLois Curfman McInnes 9083a40ed3dSBarry Smith PetscFunctionBegin; 9093501a2bdSLois Curfman McInnes if (mdn->size == 1) { 910064f8208SBarry Smith ierr = MatNorm(mdn->A,type,nrm);CHKERRQ(ierr); 9113501a2bdSLois Curfman McInnes } else { 9123501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 913d0f46423SBarry Smith for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) { 914329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 9153501a2bdSLois Curfman McInnes } 916b2566f29SBarry Smith ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 9178f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 918dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr); 9193a40ed3dSBarry Smith } else if (type == NORM_1) { 920329f5518SBarry Smith PetscReal *tmp,*tmp2; 921dcca6d9dSJed Brown ierr = PetscMalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2);CHKERRQ(ierr); 92274ed9c26SBarry Smith ierr = PetscMemzero(tmp,A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 92374ed9c26SBarry Smith ierr = PetscMemzero(tmp2,A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 924064f8208SBarry Smith *nrm = 0.0; 9253501a2bdSLois Curfman McInnes v = mat->v; 926d0f46423SBarry Smith for (j=0; j<mdn->A->cmap->n; j++) { 927d0f46423SBarry Smith for (i=0; i<mdn->A->rmap->n; i++) { 92867e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 9293501a2bdSLois Curfman McInnes } 9303501a2bdSLois Curfman McInnes } 931b2566f29SBarry Smith ierr = MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 932d0f46423SBarry Smith for (j=0; j<A->cmap->N; j++) { 933064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 9343501a2bdSLois Curfman McInnes } 9358627564fSBarry Smith ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr); 936d0f46423SBarry Smith ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr); 9373a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 938329f5518SBarry Smith PetscReal ntemp; 9393501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr); 940b2566f29SBarry Smith ierr = MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 941ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm"); 9423501a2bdSLois Curfman McInnes } 9433a40ed3dSBarry Smith PetscFunctionReturn(0); 9443501a2bdSLois Curfman McInnes } 9453501a2bdSLois Curfman McInnes 946fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 9473501a2bdSLois Curfman McInnes { 9483501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 9493501a2bdSLois Curfman McInnes Mat_SeqDense *Aloc = (Mat_SeqDense*)a->A->data; 9503501a2bdSLois Curfman McInnes Mat B; 951d0f46423SBarry Smith PetscInt M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart; 9526849ba73SBarry Smith PetscErrorCode ierr; 95313f74950SBarry Smith PetscInt j,i; 95487828ca2SBarry Smith PetscScalar *v; 9553501a2bdSLois Curfman McInnes 9563a40ed3dSBarry Smith PetscFunctionBegin; 957cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 958ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 959d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 9607adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 9610298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(B,NULL);CHKERRQ(ierr); 962fc4dec0aSBarry Smith } else { 963fc4dec0aSBarry Smith B = *matout; 964fc4dec0aSBarry Smith } 9653501a2bdSLois Curfman McInnes 966d0f46423SBarry Smith m = a->A->rmap->n; n = a->A->cmap->n; v = Aloc->v; 967785e854fSJed Brown ierr = PetscMalloc1(m,&rwork);CHKERRQ(ierr); 9683501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 9691acff37aSSatish Balay for (j=0; j<n; j++) { 9703501a2bdSLois Curfman McInnes ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr); 9713501a2bdSLois Curfman McInnes v += m; 9723501a2bdSLois Curfman McInnes } 973606d414cSSatish Balay ierr = PetscFree(rwork);CHKERRQ(ierr); 9746d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9756d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 976cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 9773501a2bdSLois Curfman McInnes *matout = B; 9783501a2bdSLois Curfman McInnes } else { 97928be2f97SBarry Smith ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr); 9803501a2bdSLois Curfman McInnes } 9813a40ed3dSBarry Smith PetscFunctionReturn(0); 982096963f5SLois Curfman McInnes } 983096963f5SLois Curfman McInnes 98444cd7ae7SLois Curfman McInnes 9856849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*); 986d84338a6SBarry Smith extern PetscErrorCode MatScale_MPIDense(Mat,PetscScalar); 9878965ea79SLois Curfman McInnes 9884994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A) 989273d9f13SBarry Smith { 990dfbe8321SBarry Smith PetscErrorCode ierr; 991273d9f13SBarry Smith 992273d9f13SBarry Smith PetscFunctionBegin; 993273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr); 994273d9f13SBarry Smith PetscFunctionReturn(0); 995273d9f13SBarry Smith } 996273d9f13SBarry Smith 997488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 998488007eeSBarry Smith { 999488007eeSBarry Smith PetscErrorCode ierr; 1000488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data; 1001488007eeSBarry Smith 1002488007eeSBarry Smith PetscFunctionBegin; 1003488007eeSBarry Smith ierr = MatAXPY(A->A,alpha,B->A,str);CHKERRQ(ierr); 1004a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 1005488007eeSBarry Smith PetscFunctionReturn(0); 1006488007eeSBarry Smith } 1007488007eeSBarry Smith 10087087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat) 1009ba337c44SJed Brown { 1010ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 1011ba337c44SJed Brown PetscErrorCode ierr; 1012ba337c44SJed Brown 1013ba337c44SJed Brown PetscFunctionBegin; 1014ba337c44SJed Brown ierr = MatConjugate(a->A);CHKERRQ(ierr); 1015ba337c44SJed Brown PetscFunctionReturn(0); 1016ba337c44SJed Brown } 1017ba337c44SJed Brown 1018ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A) 1019ba337c44SJed Brown { 1020ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1021ba337c44SJed Brown PetscErrorCode ierr; 1022ba337c44SJed Brown 1023ba337c44SJed Brown PetscFunctionBegin; 1024ba337c44SJed Brown ierr = MatRealPart(a->A);CHKERRQ(ierr); 1025ba337c44SJed Brown PetscFunctionReturn(0); 1026ba337c44SJed Brown } 1027ba337c44SJed Brown 1028ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 1029ba337c44SJed Brown { 1030ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1031ba337c44SJed Brown PetscErrorCode ierr; 1032ba337c44SJed Brown 1033ba337c44SJed Brown PetscFunctionBegin; 1034ba337c44SJed Brown ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 1035ba337c44SJed Brown PetscFunctionReturn(0); 1036ba337c44SJed Brown } 1037ba337c44SJed Brown 10380716a85fSBarry Smith extern PetscErrorCode MatGetColumnNorms_SeqDense(Mat,NormType,PetscReal*); 10390716a85fSBarry Smith PetscErrorCode MatGetColumnNorms_MPIDense(Mat A,NormType type,PetscReal *norms) 10400716a85fSBarry Smith { 10410716a85fSBarry Smith PetscErrorCode ierr; 10420716a85fSBarry Smith PetscInt i,n; 10430716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*) A->data; 10440716a85fSBarry Smith PetscReal *work; 10450716a85fSBarry Smith 10460716a85fSBarry Smith PetscFunctionBegin; 10470298fd71SBarry Smith ierr = MatGetSize(A,NULL,&n);CHKERRQ(ierr); 1048785e854fSJed Brown ierr = PetscMalloc1(n,&work);CHKERRQ(ierr); 10490716a85fSBarry Smith ierr = MatGetColumnNorms_SeqDense(a->A,type,work);CHKERRQ(ierr); 10500716a85fSBarry Smith if (type == NORM_2) { 10510716a85fSBarry Smith for (i=0; i<n; i++) work[i] *= work[i]; 10520716a85fSBarry Smith } 10530716a85fSBarry Smith if (type == NORM_INFINITY) { 1054b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_MAX,A->hdr.comm);CHKERRQ(ierr); 10550716a85fSBarry Smith } else { 1056b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_SUM,A->hdr.comm);CHKERRQ(ierr); 10570716a85fSBarry Smith } 10580716a85fSBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 10590716a85fSBarry Smith if (type == NORM_2) { 10608f1a2a5eSBarry Smith for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]); 10610716a85fSBarry Smith } 10620716a85fSBarry Smith PetscFunctionReturn(0); 10630716a85fSBarry Smith } 10640716a85fSBarry Smith 106573a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx) 106673a71a0fSBarry Smith { 106773a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense*)x->data; 106873a71a0fSBarry Smith PetscErrorCode ierr; 106973a71a0fSBarry Smith PetscScalar *a; 107073a71a0fSBarry Smith PetscInt m,n,i; 107173a71a0fSBarry Smith 107273a71a0fSBarry Smith PetscFunctionBegin; 107373a71a0fSBarry Smith ierr = MatGetSize(d->A,&m,&n);CHKERRQ(ierr); 10748c778c55SBarry Smith ierr = MatDenseGetArray(d->A,&a);CHKERRQ(ierr); 107573a71a0fSBarry Smith for (i=0; i<m*n; i++) { 107673a71a0fSBarry Smith ierr = PetscRandomGetValue(rctx,a+i);CHKERRQ(ierr); 107773a71a0fSBarry Smith } 10788c778c55SBarry Smith ierr = MatDenseRestoreArray(d->A,&a);CHKERRQ(ierr); 107973a71a0fSBarry Smith PetscFunctionReturn(0); 108073a71a0fSBarry Smith } 108173a71a0fSBarry Smith 1082fd4e9aacSBarry Smith extern PetscErrorCode MatMatMultNumeric_MPIDense(Mat A,Mat,Mat); 1083fd4e9aacSBarry Smith 10843b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool *missing,PetscInt *d) 10853b49f96aSBarry Smith { 10863b49f96aSBarry Smith PetscFunctionBegin; 10873b49f96aSBarry Smith *missing = PETSC_FALSE; 10883b49f96aSBarry Smith PetscFunctionReturn(0); 10893b49f96aSBarry Smith } 10903b49f96aSBarry Smith 10918965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 109209dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense, 109309dc0095SBarry Smith MatGetRow_MPIDense, 109409dc0095SBarry Smith MatRestoreRow_MPIDense, 109509dc0095SBarry Smith MatMult_MPIDense, 109697304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 10977c922b88SBarry Smith MatMultTranspose_MPIDense, 10987c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 10998965ea79SLois Curfman McInnes 0, 110009dc0095SBarry Smith 0, 110109dc0095SBarry Smith 0, 110297304618SKris Buschelman /* 10*/ 0, 110309dc0095SBarry Smith 0, 110409dc0095SBarry Smith 0, 110509dc0095SBarry Smith 0, 110609dc0095SBarry Smith MatTranspose_MPIDense, 110797304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 11086e4ee0c6SHong Zhang MatEqual_MPIDense, 110909dc0095SBarry Smith MatGetDiagonal_MPIDense, 11105b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 111109dc0095SBarry Smith MatNorm_MPIDense, 111297304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 111309dc0095SBarry Smith MatAssemblyEnd_MPIDense, 111409dc0095SBarry Smith MatSetOption_MPIDense, 111509dc0095SBarry Smith MatZeroEntries_MPIDense, 1116d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1117919b68f7SBarry Smith 0, 111801b82886SBarry Smith 0, 111901b82886SBarry Smith 0, 112001b82886SBarry Smith 0, 11214994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1122273d9f13SBarry Smith 0, 112309dc0095SBarry Smith 0, 1124c56a70eeSBarry Smith MatGetDiagonalBlock_MPIDense, 11258c778c55SBarry Smith 0, 1126d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 112709dc0095SBarry Smith 0, 112809dc0095SBarry Smith 0, 112909dc0095SBarry Smith 0, 113009dc0095SBarry Smith 0, 1131d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 11327dae84e0SHong Zhang MatCreateSubMatrices_MPIDense, 113309dc0095SBarry Smith 0, 113409dc0095SBarry Smith MatGetValues_MPIDense, 113509dc0095SBarry Smith 0, 1136d519adbfSMatthew Knepley /* 44*/ 0, 113709dc0095SBarry Smith MatScale_MPIDense, 11387d68702bSBarry Smith MatShift_Basic, 113909dc0095SBarry Smith 0, 114009dc0095SBarry Smith 0, 114173a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 114209dc0095SBarry Smith 0, 114309dc0095SBarry Smith 0, 114409dc0095SBarry Smith 0, 114509dc0095SBarry Smith 0, 1146d519adbfSMatthew Knepley /* 54*/ 0, 114709dc0095SBarry Smith 0, 114809dc0095SBarry Smith 0, 114909dc0095SBarry Smith 0, 115009dc0095SBarry Smith 0, 11517dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPIDense, 1152b9b97703SBarry Smith MatDestroy_MPIDense, 1153b9b97703SBarry Smith MatView_MPIDense, 1154357abbc8SBarry Smith 0, 115597304618SKris Buschelman 0, 1156d519adbfSMatthew Knepley /* 64*/ 0, 115797304618SKris Buschelman 0, 115897304618SKris Buschelman 0, 115997304618SKris Buschelman 0, 116097304618SKris Buschelman 0, 1161d519adbfSMatthew Knepley /* 69*/ 0, 116297304618SKris Buschelman 0, 116397304618SKris Buschelman 0, 116497304618SKris Buschelman 0, 116597304618SKris Buschelman 0, 1166d519adbfSMatthew Knepley /* 74*/ 0, 116797304618SKris Buschelman 0, 116897304618SKris Buschelman 0, 116997304618SKris Buschelman 0, 117097304618SKris Buschelman 0, 1171d519adbfSMatthew Knepley /* 79*/ 0, 117297304618SKris Buschelman 0, 117397304618SKris Buschelman 0, 117497304618SKris Buschelman 0, 11755bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1176865e5f61SKris Buschelman 0, 1177865e5f61SKris Buschelman 0, 1178865e5f61SKris Buschelman 0, 1179865e5f61SKris Buschelman 0, 1180865e5f61SKris Buschelman 0, 11819775878aSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1182320f2790SHong Zhang /* 89*/ MatMatMult_MPIDense_MPIDense, 1183320f2790SHong Zhang MatMatMultSymbolic_MPIDense_MPIDense, 11849775878aSHong Zhang #else 11859775878aSHong Zhang /* 89*/ 0, 1186865e5f61SKris Buschelman 0, 11879775878aSHong Zhang #endif 1188fd4e9aacSBarry Smith MatMatMultNumeric_MPIDense, 11892fbe02b9SBarry Smith 0, 1190ba337c44SJed Brown 0, 1191d519adbfSMatthew Knepley /* 94*/ 0, 1192865e5f61SKris Buschelman 0, 1193865e5f61SKris Buschelman 0, 1194ba337c44SJed Brown 0, 1195ba337c44SJed Brown 0, 1196ba337c44SJed Brown /* 99*/ 0, 1197ba337c44SJed Brown 0, 1198ba337c44SJed Brown 0, 1199ba337c44SJed Brown MatConjugate_MPIDense, 1200ba337c44SJed Brown 0, 1201ba337c44SJed Brown /*104*/ 0, 1202ba337c44SJed Brown MatRealPart_MPIDense, 1203ba337c44SJed Brown MatImaginaryPart_MPIDense, 120486d161a7SShri Abhyankar 0, 120586d161a7SShri Abhyankar 0, 120686d161a7SShri Abhyankar /*109*/ 0, 120786d161a7SShri Abhyankar 0, 120886d161a7SShri Abhyankar 0, 120986d161a7SShri Abhyankar 0, 12103b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 121186d161a7SShri Abhyankar /*114*/ 0, 121286d161a7SShri Abhyankar 0, 121386d161a7SShri Abhyankar 0, 121486d161a7SShri Abhyankar 0, 121586d161a7SShri Abhyankar 0, 121686d161a7SShri Abhyankar /*119*/ 0, 121786d161a7SShri Abhyankar 0, 121886d161a7SShri Abhyankar 0, 12190716a85fSBarry Smith 0, 12200716a85fSBarry Smith 0, 12210716a85fSBarry Smith /*124*/ 0, 12223964eb88SJed Brown MatGetColumnNorms_MPIDense, 12233964eb88SJed Brown 0, 12243964eb88SJed Brown 0, 12253964eb88SJed Brown 0, 12263964eb88SJed Brown /*129*/ 0, 1227cb20be35SHong Zhang MatTransposeMatMult_MPIDense_MPIDense, 1228cb20be35SHong Zhang MatTransposeMatMultSymbolic_MPIDense_MPIDense, 1229cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 12303964eb88SJed Brown 0, 12313964eb88SJed Brown /*134*/ 0, 12323964eb88SJed Brown 0, 12333964eb88SJed Brown 0, 12343964eb88SJed Brown 0, 12353964eb88SJed Brown 0, 12363964eb88SJed Brown /*139*/ 0, 1237f9426fe0SMark Adams 0, 123894e2cb23SJakub Kruzik 0, 123994e2cb23SJakub Kruzik 0, 124094e2cb23SJakub Kruzik 0, 12411ae5eee8SJakub Kruzik /*144*/ MatCreateMPIMatConcatenateSeqMat_MPIDense 1242ba337c44SJed Brown }; 12438965ea79SLois Curfman McInnes 12447087cfbeSBarry Smith PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1245a23d5eceSKris Buschelman { 1246a23d5eceSKris Buschelman Mat_MPIDense *a; 1247dfbe8321SBarry Smith PetscErrorCode ierr; 1248a23d5eceSKris Buschelman 1249a23d5eceSKris Buschelman PetscFunctionBegin; 1250a23d5eceSKris Buschelman mat->preallocated = PETSC_TRUE; 1251a23d5eceSKris Buschelman /* Note: For now, when data is specified above, this assumes the user correctly 1252a23d5eceSKris Buschelman allocates the local dense storage space. We should add error checking. */ 1253a23d5eceSKris Buschelman 1254a23d5eceSKris Buschelman a = (Mat_MPIDense*)mat->data; 125534ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr); 125634ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr); 125734ef9618SShri Abhyankar a->nvec = mat->cmap->n; 125834ef9618SShri Abhyankar 1259f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr); 1260d0f46423SBarry Smith ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr); 12615c5985e7SKris Buschelman ierr = MatSetType(a->A,MATSEQDENSE);CHKERRQ(ierr); 12625c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr); 12633bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 1264a23d5eceSKris Buschelman PetscFunctionReturn(0); 1265a23d5eceSKris Buschelman } 1266a23d5eceSKris Buschelman 126765b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1268cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 12698baccfbdSHong Zhang { 12708ea901baSHong Zhang Mat mat_elemental; 12718ea901baSHong Zhang PetscErrorCode ierr; 127232d7a744SHong Zhang PetscScalar *v; 127332d7a744SHong Zhang PetscInt m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols; 12748ea901baSHong Zhang 12758baccfbdSHong Zhang PetscFunctionBegin; 1276378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1277378336b6SHong Zhang mat_elemental = *newmat; 1278378336b6SHong Zhang ierr = MatZeroEntries(*newmat);CHKERRQ(ierr); 1279378336b6SHong Zhang } else { 1280378336b6SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr); 1281378336b6SHong Zhang ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 1282378336b6SHong Zhang ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr); 1283378336b6SHong Zhang ierr = MatSetUp(mat_elemental);CHKERRQ(ierr); 128432d7a744SHong Zhang ierr = MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 1285378336b6SHong Zhang } 1286378336b6SHong Zhang 128732d7a744SHong Zhang ierr = PetscMalloc2(m,&rows,N,&cols);CHKERRQ(ierr); 128832d7a744SHong Zhang for (i=0; i<N; i++) cols[i] = i; 128932d7a744SHong Zhang for (i=0; i<m; i++) rows[i] = rstart + i; 12908ea901baSHong Zhang 12918ea901baSHong Zhang /* PETSc-Elemental interaface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 129232d7a744SHong Zhang ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr); 129332d7a744SHong Zhang ierr = MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES);CHKERRQ(ierr); 12948ea901baSHong Zhang ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 12958ea901baSHong Zhang ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 129632d7a744SHong Zhang ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr); 129732d7a744SHong Zhang ierr = PetscFree2(rows,cols);CHKERRQ(ierr); 12988ea901baSHong Zhang 1299511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 130028be2f97SBarry Smith ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr); 13018ea901baSHong Zhang } else { 13028ea901baSHong Zhang *newmat = mat_elemental; 13038ea901baSHong Zhang } 13048baccfbdSHong Zhang PetscFunctionReturn(0); 13058baccfbdSHong Zhang } 130665b80a83SHong Zhang #endif 13078baccfbdSHong Zhang 1308af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A,PetscInt col,PetscScalar **vals) 130986aefd0dSHong Zhang { 131086aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 131186aefd0dSHong Zhang PetscErrorCode ierr; 131286aefd0dSHong Zhang 131386aefd0dSHong Zhang PetscFunctionBegin; 131486aefd0dSHong Zhang ierr = MatDenseGetColumn(mat->A,col,vals);CHKERRQ(ierr); 131586aefd0dSHong Zhang PetscFunctionReturn(0); 131686aefd0dSHong Zhang } 131786aefd0dSHong Zhang 1318af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A,PetscScalar **vals) 131986aefd0dSHong Zhang { 132086aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 132186aefd0dSHong Zhang PetscErrorCode ierr; 132286aefd0dSHong Zhang 132386aefd0dSHong Zhang PetscFunctionBegin; 132486aefd0dSHong Zhang ierr = MatDenseRestoreColumn(mat->A,vals);CHKERRQ(ierr); 132586aefd0dSHong Zhang PetscFunctionReturn(0); 132686aefd0dSHong Zhang } 132786aefd0dSHong Zhang 132894e2cb23SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 132994e2cb23SJakub Kruzik { 133094e2cb23SJakub Kruzik PetscErrorCode ierr; 133194e2cb23SJakub Kruzik Mat_MPIDense *mat; 133294e2cb23SJakub Kruzik PetscInt m,nloc,N; 133394e2cb23SJakub Kruzik 133494e2cb23SJakub Kruzik PetscFunctionBegin; 133594e2cb23SJakub Kruzik ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 133694e2cb23SJakub Kruzik ierr = MatGetLocalSize(inmat,NULL,&nloc);CHKERRQ(ierr); 133794e2cb23SJakub Kruzik if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 133894e2cb23SJakub Kruzik PetscInt sum; 133994e2cb23SJakub Kruzik 134094e2cb23SJakub Kruzik if (n == PETSC_DECIDE) { 134194e2cb23SJakub Kruzik ierr = PetscSplitOwnership(comm,&n,&N);CHKERRQ(ierr); 134294e2cb23SJakub Kruzik } 134394e2cb23SJakub Kruzik /* Check sum(n) = N */ 134494e2cb23SJakub Kruzik ierr = MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 134594e2cb23SJakub Kruzik if (sum != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns %D != global columns %D",sum,N); 134694e2cb23SJakub Kruzik 134794e2cb23SJakub Kruzik ierr = MatCreateDense(comm,m,n,PETSC_DETERMINE,N,NULL,outmat);CHKERRQ(ierr); 134894e2cb23SJakub Kruzik } 134994e2cb23SJakub Kruzik 135094e2cb23SJakub Kruzik /* numeric phase */ 135194e2cb23SJakub Kruzik mat = (Mat_MPIDense*)(*outmat)->data; 135294e2cb23SJakub Kruzik ierr = MatCopy(inmat,mat->A,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 135394e2cb23SJakub Kruzik ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 135494e2cb23SJakub Kruzik ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 135594e2cb23SJakub Kruzik PetscFunctionReturn(0); 135694e2cb23SJakub Kruzik } 135794e2cb23SJakub Kruzik 13588cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat) 1359273d9f13SBarry Smith { 1360273d9f13SBarry Smith Mat_MPIDense *a; 1361dfbe8321SBarry Smith PetscErrorCode ierr; 1362273d9f13SBarry Smith 1363273d9f13SBarry Smith PetscFunctionBegin; 1364b00a9115SJed Brown ierr = PetscNewLog(mat,&a);CHKERRQ(ierr); 1365b0a32e0cSBarry Smith mat->data = (void*)a; 1366273d9f13SBarry Smith ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1367273d9f13SBarry Smith 1368273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1369ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&a->rank);CHKERRQ(ierr); 1370ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&a->size);CHKERRQ(ierr); 1371273d9f13SBarry Smith 1372273d9f13SBarry Smith /* build cache for off array entries formed */ 1373273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 13742205254eSKarl Rupp 1375ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash);CHKERRQ(ierr); 1376273d9f13SBarry Smith 1377273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1378273d9f13SBarry Smith a->lvec = 0; 1379273d9f13SBarry Smith a->Mvctx = 0; 1380273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1381273d9f13SBarry Smith 1382bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense);CHKERRQ(ierr); 13838572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense);CHKERRQ(ierr); 13848572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",MatDenseGetArrayRead_MPIDense);CHKERRQ(ierr); 13858572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",MatDenseRestoreArrayRead_MPIDense);CHKERRQ(ierr); 1386d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",MatDensePlaceArray_MPIDense);CHKERRQ(ierr); 1387d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",MatDenseResetArray_MPIDense);CHKERRQ(ierr); 13888baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 13898baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental);CHKERRQ(ierr); 13908baccfbdSHong Zhang #endif 1391bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr); 1392bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",MatMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr); 1393bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 1394bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 13958949adfdSHong Zhang 13968949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMult_mpiaij_mpidense_C",MatTransposeMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr); 13978949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",MatTransposeMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 13988949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",MatTransposeMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 1399af53bab2SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",MatDenseGetColumn_MPIDense);CHKERRQ(ierr); 1400af53bab2SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_MPIDense);CHKERRQ(ierr); 140138aed534SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr); 1402273d9f13SBarry Smith PetscFunctionReturn(0); 1403273d9f13SBarry Smith } 1404273d9f13SBarry Smith 1405209238afSKris Buschelman /*MC 1406002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1407209238afSKris Buschelman 1408209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 1409209238afSKris Buschelman and MATMPIDENSE otherwise. 1410209238afSKris Buschelman 1411209238afSKris Buschelman Options Database Keys: 1412209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 1413209238afSKris Buschelman 1414209238afSKris Buschelman Level: beginner 1415209238afSKris Buschelman 141601b82886SBarry Smith 1417209238afSKris Buschelman .seealso: MatCreateMPIDense,MATSEQDENSE,MATMPIDENSE 1418209238afSKris Buschelman M*/ 1419209238afSKris Buschelman 1420273d9f13SBarry Smith /*@C 1421273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1422273d9f13SBarry Smith 1423273d9f13SBarry Smith Not collective 1424273d9f13SBarry Smith 1425273d9f13SBarry Smith Input Parameters: 14261c4f3114SJed Brown . B - the matrix 14270298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL for PETSc 1428273d9f13SBarry Smith to control all matrix memory allocation. 1429273d9f13SBarry Smith 1430273d9f13SBarry Smith Notes: 1431273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 1432273d9f13SBarry Smith storage by columns. 1433273d9f13SBarry Smith 1434273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1435273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 14360298fd71SBarry Smith set data=NULL. 1437273d9f13SBarry Smith 1438273d9f13SBarry Smith Level: intermediate 1439273d9f13SBarry Smith 1440273d9f13SBarry Smith .keywords: matrix,dense, parallel 1441273d9f13SBarry Smith 1442273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 1443273d9f13SBarry Smith @*/ 14441c4f3114SJed Brown PetscErrorCode MatMPIDenseSetPreallocation(Mat B,PetscScalar *data) 1445273d9f13SBarry Smith { 14464ac538c5SBarry Smith PetscErrorCode ierr; 1447273d9f13SBarry Smith 1448273d9f13SBarry Smith PetscFunctionBegin; 14491c4f3114SJed Brown ierr = PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data));CHKERRQ(ierr); 1450273d9f13SBarry Smith PetscFunctionReturn(0); 1451273d9f13SBarry Smith } 1452273d9f13SBarry Smith 1453d3042a70SBarry Smith /*@ 1454d3042a70SBarry Smith MatDensePlaceArray - Allows one to replace the array in a dense array with an 1455d3042a70SBarry Smith array provided by the user. This is useful to avoid copying an array 1456d3042a70SBarry Smith into a matrix 1457d3042a70SBarry Smith 1458d3042a70SBarry Smith Not Collective 1459d3042a70SBarry Smith 1460d3042a70SBarry Smith Input Parameters: 1461d3042a70SBarry Smith + mat - the matrix 1462d3042a70SBarry Smith - array - the array in column major order 1463d3042a70SBarry Smith 1464d3042a70SBarry Smith Notes: 1465d3042a70SBarry Smith You can return to the original array with a call to MatDenseResetArray(). The user is responsible for freeing this array; it will not be 1466d3042a70SBarry Smith freed when the matrix is destroyed. 1467d3042a70SBarry Smith 1468d3042a70SBarry Smith Level: developer 1469d3042a70SBarry Smith 1470d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDenseResetArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 1471d3042a70SBarry Smith 1472d3042a70SBarry Smith @*/ 1473d3042a70SBarry Smith PetscErrorCode MatDensePlaceArray(Mat mat,const PetscScalar array[]) 1474d3042a70SBarry Smith { 1475d3042a70SBarry Smith PetscErrorCode ierr; 1476d3042a70SBarry Smith PetscFunctionBegin; 1477d3042a70SBarry Smith ierr = PetscUseMethod(mat,"MatDensePlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 1478d3042a70SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 1479d3042a70SBarry Smith PetscFunctionReturn(0); 1480d3042a70SBarry Smith } 1481d3042a70SBarry Smith 1482d3042a70SBarry Smith /*@ 1483d3042a70SBarry Smith MatDenseResetArray - Resets the matrix array to that it previously had before the call to MatDensePlaceArray() 1484d3042a70SBarry Smith 1485d3042a70SBarry Smith Not Collective 1486d3042a70SBarry Smith 1487d3042a70SBarry Smith Input Parameters: 1488d3042a70SBarry Smith . mat - the matrix 1489d3042a70SBarry Smith 1490d3042a70SBarry Smith Notes: 1491d3042a70SBarry Smith You can only call this after a call to MatDensePlaceArray() 1492d3042a70SBarry Smith 1493d3042a70SBarry Smith Level: developer 1494d3042a70SBarry Smith 1495d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDensePlaceArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 1496d3042a70SBarry Smith 1497d3042a70SBarry Smith @*/ 1498d3042a70SBarry Smith PetscErrorCode MatDenseResetArray(Mat mat) 1499d3042a70SBarry Smith { 1500d3042a70SBarry Smith PetscErrorCode ierr; 1501d3042a70SBarry Smith PetscFunctionBegin; 1502d3042a70SBarry Smith ierr = PetscUseMethod(mat,"MatDenseResetArray_C",(Mat),(mat));CHKERRQ(ierr); 1503d3042a70SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 1504d3042a70SBarry Smith PetscFunctionReturn(0); 1505d3042a70SBarry Smith } 1506d3042a70SBarry Smith 15078965ea79SLois Curfman McInnes /*@C 150869b1f4b7SBarry Smith MatCreateDense - Creates a parallel matrix in dense format. 15098965ea79SLois Curfman McInnes 1510db81eaa0SLois Curfman McInnes Collective on MPI_Comm 1511db81eaa0SLois Curfman McInnes 15128965ea79SLois Curfman McInnes Input Parameters: 1513db81eaa0SLois Curfman McInnes + comm - MPI communicator 15148965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1515db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 15168965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 1517db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 15186cfe35ddSJose E. Roman - data - optional location of matrix data. Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc 1519dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 15208965ea79SLois Curfman McInnes 15218965ea79SLois Curfman McInnes Output Parameter: 1522477f1c0bSLois Curfman McInnes . A - the matrix 15238965ea79SLois Curfman McInnes 1524b259b22eSLois Curfman McInnes Notes: 152539ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 152639ddd567SLois Curfman McInnes storage by columns. 15278965ea79SLois Curfman McInnes 152818f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 152918f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 15306cfe35ddSJose E. Roman set data=NULL (PETSC_NULL_SCALAR for Fortran users). 153118f449edSLois Curfman McInnes 15328965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 15338965ea79SLois Curfman McInnes (possibly both). 15348965ea79SLois Curfman McInnes 1535027ccd11SLois Curfman McInnes Level: intermediate 1536027ccd11SLois Curfman McInnes 153739ddd567SLois Curfman McInnes .keywords: matrix,dense, parallel 15388965ea79SLois Curfman McInnes 153939ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 15408965ea79SLois Curfman McInnes @*/ 154169b1f4b7SBarry Smith PetscErrorCode MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 15428965ea79SLois Curfman McInnes { 15436849ba73SBarry Smith PetscErrorCode ierr; 154413f74950SBarry Smith PetscMPIInt size; 15458965ea79SLois Curfman McInnes 15463a40ed3dSBarry Smith PetscFunctionBegin; 1547f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 1548f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 1549273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1550273d9f13SBarry Smith if (size > 1) { 1551273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr); 1552273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr); 15536cfe35ddSJose E. Roman if (data) { /* user provided data array, so no need to assemble */ 15546cfe35ddSJose E. Roman ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr); 15556cfe35ddSJose E. Roman (*A)->assembled = PETSC_TRUE; 15566cfe35ddSJose E. Roman } 1557273d9f13SBarry Smith } else { 1558273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 1559273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 15608c469469SLois Curfman McInnes } 15613a40ed3dSBarry Smith PetscFunctionReturn(0); 15628965ea79SLois Curfman McInnes } 15638965ea79SLois Curfman McInnes 15646849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 15658965ea79SLois Curfman McInnes { 15668965ea79SLois Curfman McInnes Mat mat; 15673501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 1568dfbe8321SBarry Smith PetscErrorCode ierr; 15698965ea79SLois Curfman McInnes 15703a40ed3dSBarry Smith PetscFunctionBegin; 15718965ea79SLois Curfman McInnes *newmat = 0; 1572ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&mat);CHKERRQ(ierr); 1573d0f46423SBarry Smith ierr = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 15747adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr); 1575834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 1576e04c1aa4SHong Zhang ierr = PetscMemcpy(mat->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 15775aa7edbeSHong Zhang 1578d5f3da31SBarry Smith mat->factortype = A->factortype; 1579c456f294SBarry Smith mat->assembled = PETSC_TRUE; 1580273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 15818965ea79SLois Curfman McInnes 15828965ea79SLois Curfman McInnes a->size = oldmat->size; 15838965ea79SLois Curfman McInnes a->rank = oldmat->rank; 1584e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 1585b9b97703SBarry Smith a->nvec = oldmat->nvec; 15863782ba37SSatish Balay a->donotstash = oldmat->donotstash; 1587e04c1aa4SHong Zhang 15881e1e43feSBarry Smith ierr = PetscLayoutReference(A->rmap,&mat->rmap);CHKERRQ(ierr); 15891e1e43feSBarry Smith ierr = PetscLayoutReference(A->cmap,&mat->cmap);CHKERRQ(ierr); 15908965ea79SLois Curfman McInnes 1591329f5518SBarry Smith ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 15925609ef8eSBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 15933bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 159401b82886SBarry Smith 15958965ea79SLois Curfman McInnes *newmat = mat; 15963a40ed3dSBarry Smith PetscFunctionReturn(0); 15978965ea79SLois Curfman McInnes } 15988965ea79SLois Curfman McInnes 15999d36ed5fSBarry Smith PetscErrorCode MatLoad_MPIDense_DenseInFile(MPI_Comm comm,PetscInt fd,PetscInt M,PetscInt N,Mat newmat) 160086d161a7SShri Abhyankar { 160186d161a7SShri Abhyankar PetscErrorCode ierr; 160286d161a7SShri Abhyankar PetscMPIInt rank,size; 160374c13d95SBarry Smith const PetscInt *rowners; 160474c13d95SBarry Smith PetscInt i,m,n,nz,j,mMax; 160586d161a7SShri Abhyankar PetscScalar *array,*vals,*vals_ptr; 16069d36ed5fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)newmat->data; 160786d161a7SShri Abhyankar 160886d161a7SShri Abhyankar PetscFunctionBegin; 160986d161a7SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 161086d161a7SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 161186d161a7SShri Abhyankar 161274c13d95SBarry Smith /* determine ownership of rows and columns */ 161374c13d95SBarry Smith m = (newmat->rmap->n < 0) ? PETSC_DECIDE : newmat->rmap->n; 161474c13d95SBarry Smith n = (newmat->cmap->n < 0) ? PETSC_DECIDE : newmat->cmap->n; 161586d161a7SShri Abhyankar 161674c13d95SBarry Smith ierr = MatSetSizes(newmat,m,n,M,N);CHKERRQ(ierr); 16179d36ed5fSBarry Smith if (!a->A || !((Mat_SeqDense*)(a->A->data))->user_alloc) { 16180298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 16199d36ed5fSBarry Smith } 16208c778c55SBarry Smith ierr = MatDenseGetArray(newmat,&array);CHKERRQ(ierr); 162149467e7dSBarry Smith ierr = MatGetLocalSize(newmat,&m,NULL);CHKERRQ(ierr); 162274c13d95SBarry Smith ierr = MatGetOwnershipRanges(newmat,&rowners);CHKERRQ(ierr); 1623396e826eSBarry Smith ierr = MPI_Reduce(&m,&mMax,1,MPIU_INT,MPI_MAX,0,comm);CHKERRQ(ierr); 162486d161a7SShri Abhyankar if (!rank) { 16259d36ed5fSBarry Smith ierr = PetscMalloc1(mMax*N,&vals);CHKERRQ(ierr); 162686d161a7SShri Abhyankar 162786d161a7SShri Abhyankar /* read in my part of the matrix numerical values */ 162886d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,m*N,PETSC_SCALAR);CHKERRQ(ierr); 162986d161a7SShri Abhyankar 163086d161a7SShri Abhyankar /* insert into matrix-by row (this is why cannot directly read into array */ 163186d161a7SShri Abhyankar vals_ptr = vals; 163286d161a7SShri Abhyankar for (i=0; i<m; i++) { 163386d161a7SShri Abhyankar for (j=0; j<N; j++) { 163486d161a7SShri Abhyankar array[i + j*m] = *vals_ptr++; 163586d161a7SShri Abhyankar } 163686d161a7SShri Abhyankar } 163786d161a7SShri Abhyankar 163886d161a7SShri Abhyankar /* read in other processors and ship out */ 163986d161a7SShri Abhyankar for (i=1; i<size; i++) { 164086d161a7SShri Abhyankar nz = (rowners[i+1] - rowners[i])*N; 164186d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 1642a25532f0SBarry Smith ierr = MPIULong_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)(newmat))->tag,comm);CHKERRQ(ierr); 164386d161a7SShri Abhyankar } 164486d161a7SShri Abhyankar } else { 164586d161a7SShri Abhyankar /* receive numeric values */ 1646785e854fSJed Brown ierr = PetscMalloc1(m*N,&vals);CHKERRQ(ierr); 164786d161a7SShri Abhyankar 164886d161a7SShri Abhyankar /* receive message of values*/ 1649a25532f0SBarry Smith ierr = MPIULong_Recv(vals,m*N,MPIU_SCALAR,0,((PetscObject)(newmat))->tag,comm);CHKERRQ(ierr); 165086d161a7SShri Abhyankar 165186d161a7SShri Abhyankar /* insert into matrix-by row (this is why cannot directly read into array */ 165286d161a7SShri Abhyankar vals_ptr = vals; 165386d161a7SShri Abhyankar for (i=0; i<m; i++) { 165486d161a7SShri Abhyankar for (j=0; j<N; j++) { 165586d161a7SShri Abhyankar array[i + j*m] = *vals_ptr++; 165686d161a7SShri Abhyankar } 165786d161a7SShri Abhyankar } 165886d161a7SShri Abhyankar } 16598c778c55SBarry Smith ierr = MatDenseRestoreArray(newmat,&array);CHKERRQ(ierr); 166086d161a7SShri Abhyankar ierr = PetscFree(vals);CHKERRQ(ierr); 166186d161a7SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 166286d161a7SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 166386d161a7SShri Abhyankar PetscFunctionReturn(0); 166486d161a7SShri Abhyankar } 166586d161a7SShri Abhyankar 1666112444f4SShri Abhyankar PetscErrorCode MatLoad_MPIDense(Mat newmat,PetscViewer viewer) 166786d161a7SShri Abhyankar { 1668dfdea288SBarry Smith Mat_MPIDense *a; 166986d161a7SShri Abhyankar PetscScalar *vals,*svals; 1670ce94432eSBarry Smith MPI_Comm comm; 167186d161a7SShri Abhyankar MPI_Status status; 167249467e7dSBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*rowners,*sndcounts,m,n,maxnz; 167386d161a7SShri Abhyankar PetscInt header[4],*rowlengths = 0,M,N,*cols; 167449467e7dSBarry Smith PetscInt *ourlens,*procsnz = 0,jj,*mycols,*smycols; 16759d36ed5fSBarry Smith PetscInt i,nz,j,rstart,rend; 167686d161a7SShri Abhyankar int fd; 1677*7f489da9SVaclav Hapla PetscBool isbinary; 167886d161a7SShri Abhyankar PetscErrorCode ierr; 167986d161a7SShri Abhyankar 168086d161a7SShri Abhyankar PetscFunctionBegin; 1681*7f489da9SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 1682*7f489da9SVaclav Hapla if (!isbinary) SETERRQ2(PetscObjectComm((PetscObject)newmat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newmat)->type_name); 1683*7f489da9SVaclav Hapla 1684c98fd787SBarry Smith /* force binary viewer to load .info file if it has not yet done so */ 1685c98fd787SBarry Smith ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 1686ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 168786d161a7SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 168886d161a7SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 168986d161a7SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 16905872f025SBarry Smith if (!rank) { 169186d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr); 169286d161a7SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 169386d161a7SShri Abhyankar } 169486d161a7SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 169586d161a7SShri Abhyankar M = header[1]; N = header[2]; nz = header[3]; 169686d161a7SShri Abhyankar 169786d161a7SShri Abhyankar /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */ 16989d36ed5fSBarry Smith if (newmat->rmap->N < 0) newmat->rmap->N = M; 16999d36ed5fSBarry Smith if (newmat->cmap->N < 0) newmat->cmap->N = N; 170086d161a7SShri Abhyankar 17019d36ed5fSBarry Smith if (newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",M,newmat->rmap->N); 17029d36ed5fSBarry Smith if (newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",N,newmat->cmap->N); 170386d161a7SShri Abhyankar 170486d161a7SShri Abhyankar /* 170586d161a7SShri Abhyankar Handle case where matrix is stored on disk as a dense matrix 170686d161a7SShri Abhyankar */ 170786d161a7SShri Abhyankar if (nz == MATRIX_BINARY_FORMAT_DENSE) { 17089d36ed5fSBarry Smith ierr = MatLoad_MPIDense_DenseInFile(comm,fd,M,N,newmat);CHKERRQ(ierr); 170986d161a7SShri Abhyankar PetscFunctionReturn(0); 171086d161a7SShri Abhyankar } 171186d161a7SShri Abhyankar 171286d161a7SShri Abhyankar /* determine ownership of all rows */ 17132205254eSKarl Rupp if (newmat->rmap->n < 0) { 17142205254eSKarl Rupp ierr = PetscMPIIntCast(M/size + ((M % size) > rank),&m);CHKERRQ(ierr); 17152205254eSKarl Rupp } else { 17162205254eSKarl Rupp ierr = PetscMPIIntCast(newmat->rmap->n,&m);CHKERRQ(ierr); 17172205254eSKarl Rupp } 171849467e7dSBarry Smith if (newmat->cmap->n < 0) { 171949467e7dSBarry Smith n = PETSC_DECIDE; 172049467e7dSBarry Smith } else { 172149467e7dSBarry Smith ierr = PetscMPIIntCast(newmat->cmap->n,&n);CHKERRQ(ierr); 172249467e7dSBarry Smith } 172349467e7dSBarry Smith 1724854ce69bSBarry Smith ierr = PetscMalloc1(size+2,&rowners);CHKERRQ(ierr); 172586d161a7SShri Abhyankar ierr = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 172686d161a7SShri Abhyankar rowners[0] = 0; 172786d161a7SShri Abhyankar for (i=2; i<=size; i++) { 172886d161a7SShri Abhyankar rowners[i] += rowners[i-1]; 172986d161a7SShri Abhyankar } 173086d161a7SShri Abhyankar rstart = rowners[rank]; 173186d161a7SShri Abhyankar rend = rowners[rank+1]; 173286d161a7SShri Abhyankar 173386d161a7SShri Abhyankar /* distribute row lengths to all processors */ 173449467e7dSBarry Smith ierr = PetscMalloc1(rend-rstart,&ourlens);CHKERRQ(ierr); 173586d161a7SShri Abhyankar if (!rank) { 1736785e854fSJed Brown ierr = PetscMalloc1(M,&rowlengths);CHKERRQ(ierr); 173786d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 1738785e854fSJed Brown ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr); 173986d161a7SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = rowners[i+1] - rowners[i]; 174086d161a7SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr); 174186d161a7SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 174286d161a7SShri Abhyankar } else { 174386d161a7SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr); 174486d161a7SShri Abhyankar } 174586d161a7SShri Abhyankar 174686d161a7SShri Abhyankar if (!rank) { 174786d161a7SShri Abhyankar /* calculate the number of nonzeros on each processor */ 1748785e854fSJed Brown ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr); 174986d161a7SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 175086d161a7SShri Abhyankar for (i=0; i<size; i++) { 175186d161a7SShri Abhyankar for (j=rowners[i]; j< rowners[i+1]; j++) { 175286d161a7SShri Abhyankar procsnz[i] += rowlengths[j]; 175386d161a7SShri Abhyankar } 175486d161a7SShri Abhyankar } 175586d161a7SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 175686d161a7SShri Abhyankar 175786d161a7SShri Abhyankar /* determine max buffer needed and allocate it */ 175886d161a7SShri Abhyankar maxnz = 0; 175986d161a7SShri Abhyankar for (i=0; i<size; i++) { 176086d161a7SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 176186d161a7SShri Abhyankar } 1762785e854fSJed Brown ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr); 176386d161a7SShri Abhyankar 176486d161a7SShri Abhyankar /* read in my part of the matrix column indices */ 176586d161a7SShri Abhyankar nz = procsnz[0]; 1766785e854fSJed Brown ierr = PetscMalloc1(nz,&mycols);CHKERRQ(ierr); 176786d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 176886d161a7SShri Abhyankar 176986d161a7SShri Abhyankar /* read in every one elses and ship off */ 177086d161a7SShri Abhyankar for (i=1; i<size; i++) { 177186d161a7SShri Abhyankar nz = procsnz[i]; 177286d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 177386d161a7SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 177486d161a7SShri Abhyankar } 177586d161a7SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 177686d161a7SShri Abhyankar } else { 177786d161a7SShri Abhyankar /* determine buffer space needed for message */ 177886d161a7SShri Abhyankar nz = 0; 177986d161a7SShri Abhyankar for (i=0; i<m; i++) { 178086d161a7SShri Abhyankar nz += ourlens[i]; 178186d161a7SShri Abhyankar } 1782854ce69bSBarry Smith ierr = PetscMalloc1(nz+1,&mycols);CHKERRQ(ierr); 178386d161a7SShri Abhyankar 178486d161a7SShri Abhyankar /* receive message of column indices*/ 178586d161a7SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 178686d161a7SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 178786d161a7SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 178886d161a7SShri Abhyankar } 178986d161a7SShri Abhyankar 179049467e7dSBarry Smith ierr = MatSetSizes(newmat,m,n,M,N);CHKERRQ(ierr); 1791dfdea288SBarry Smith a = (Mat_MPIDense*)newmat->data; 17922e3566b0SBarry Smith if (!a->A || !((Mat_SeqDense*)(a->A->data))->user_alloc) { 17930298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 1794dfdea288SBarry Smith } 179586d161a7SShri Abhyankar 179686d161a7SShri Abhyankar if (!rank) { 1797785e854fSJed Brown ierr = PetscMalloc1(maxnz,&vals);CHKERRQ(ierr); 179886d161a7SShri Abhyankar 179986d161a7SShri Abhyankar /* read in my part of the matrix numerical values */ 180086d161a7SShri Abhyankar nz = procsnz[0]; 180186d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 180286d161a7SShri Abhyankar 180386d161a7SShri Abhyankar /* insert into matrix */ 180486d161a7SShri Abhyankar jj = rstart; 180586d161a7SShri Abhyankar smycols = mycols; 180686d161a7SShri Abhyankar svals = vals; 180786d161a7SShri Abhyankar for (i=0; i<m; i++) { 180886d161a7SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 180986d161a7SShri Abhyankar smycols += ourlens[i]; 181086d161a7SShri Abhyankar svals += ourlens[i]; 181186d161a7SShri Abhyankar jj++; 181286d161a7SShri Abhyankar } 181386d161a7SShri Abhyankar 181486d161a7SShri Abhyankar /* read in other processors and ship out */ 181586d161a7SShri Abhyankar for (i=1; i<size; i++) { 181686d161a7SShri Abhyankar nz = procsnz[i]; 181786d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 181886d161a7SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 181986d161a7SShri Abhyankar } 182086d161a7SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 182186d161a7SShri Abhyankar } else { 182286d161a7SShri Abhyankar /* receive numeric values */ 1823854ce69bSBarry Smith ierr = PetscMalloc1(nz+1,&vals);CHKERRQ(ierr); 182486d161a7SShri Abhyankar 182586d161a7SShri Abhyankar /* receive message of values*/ 182686d161a7SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 182786d161a7SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 182886d161a7SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 182986d161a7SShri Abhyankar 183086d161a7SShri Abhyankar /* insert into matrix */ 183186d161a7SShri Abhyankar jj = rstart; 183286d161a7SShri Abhyankar smycols = mycols; 183386d161a7SShri Abhyankar svals = vals; 183486d161a7SShri Abhyankar for (i=0; i<m; i++) { 183586d161a7SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 183686d161a7SShri Abhyankar smycols += ourlens[i]; 183786d161a7SShri Abhyankar svals += ourlens[i]; 183886d161a7SShri Abhyankar jj++; 183986d161a7SShri Abhyankar } 184086d161a7SShri Abhyankar } 184149467e7dSBarry Smith ierr = PetscFree(ourlens);CHKERRQ(ierr); 184286d161a7SShri Abhyankar ierr = PetscFree(vals);CHKERRQ(ierr); 184386d161a7SShri Abhyankar ierr = PetscFree(mycols);CHKERRQ(ierr); 184486d161a7SShri Abhyankar ierr = PetscFree(rowners);CHKERRQ(ierr); 184586d161a7SShri Abhyankar 184686d161a7SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 184786d161a7SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 184886d161a7SShri Abhyankar PetscFunctionReturn(0); 184986d161a7SShri Abhyankar } 185086d161a7SShri Abhyankar 1851ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool *flag) 18526e4ee0c6SHong Zhang { 18536e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 18546e4ee0c6SHong Zhang Mat a,b; 1855ace3abfcSBarry Smith PetscBool flg; 18566e4ee0c6SHong Zhang PetscErrorCode ierr; 185790ace30eSBarry Smith 18586e4ee0c6SHong Zhang PetscFunctionBegin; 18596e4ee0c6SHong Zhang a = matA->A; 18606e4ee0c6SHong Zhang b = matB->A; 18616e4ee0c6SHong Zhang ierr = MatEqual(a,b,&flg);CHKERRQ(ierr); 1862b2566f29SBarry Smith ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 18636e4ee0c6SHong Zhang PetscFunctionReturn(0); 18646e4ee0c6SHong Zhang } 186590ace30eSBarry Smith 1866baa3c1c6SHong Zhang PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(Mat A) 1867baa3c1c6SHong Zhang { 1868baa3c1c6SHong Zhang PetscErrorCode ierr; 1869baa3c1c6SHong Zhang Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1870baa3c1c6SHong Zhang Mat_TransMatMultDense *atb = a->atbdense; 1871baa3c1c6SHong Zhang 1872baa3c1c6SHong Zhang PetscFunctionBegin; 1873c5ef1628SHong Zhang ierr = PetscFree3(atb->sendbuf,atb->atbarray,atb->recvcounts);CHKERRQ(ierr); 1874baa3c1c6SHong Zhang ierr = (atb->destroy)(A);CHKERRQ(ierr); 1875baa3c1c6SHong Zhang ierr = PetscFree(atb);CHKERRQ(ierr); 1876baa3c1c6SHong Zhang PetscFunctionReturn(0); 1877baa3c1c6SHong Zhang } 1878baa3c1c6SHong Zhang 1879cb20be35SHong Zhang PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 1880cb20be35SHong Zhang { 1881baa3c1c6SHong Zhang Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 1882660d5466SHong Zhang Mat_SeqDense *aseq=(Mat_SeqDense*)(a->A)->data, *bseq=(Mat_SeqDense*)(b->A)->data; 1883baa3c1c6SHong Zhang Mat_TransMatMultDense *atb = c->atbdense; 1884cb20be35SHong Zhang PetscErrorCode ierr; 1885cb20be35SHong Zhang MPI_Comm comm; 1886d5017740SHong Zhang PetscMPIInt rank,size,*recvcounts=atb->recvcounts; 1887c5ef1628SHong Zhang PetscScalar *carray,*atbarray=atb->atbarray,*sendbuf=atb->sendbuf; 1888d5017740SHong Zhang PetscInt i,cN=C->cmap->N,cM=C->rmap->N,proc,k,j; 1889660d5466SHong Zhang PetscScalar _DOne=1.0,_DZero=0.0; 1890adc7a786SHong Zhang PetscBLASInt am,an,bn,aN; 1891e68c0b26SHong Zhang const PetscInt *ranges; 1892cb20be35SHong Zhang 1893cb20be35SHong Zhang PetscFunctionBegin; 1894cb20be35SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 1895cb20be35SHong Zhang ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 1896cb20be35SHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1897e68c0b26SHong Zhang 1898c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 1899660d5466SHong Zhang ierr = PetscBLASIntCast(a->A->cmap->n,&an);CHKERRQ(ierr); 1900660d5466SHong Zhang ierr = PetscBLASIntCast(b->A->cmap->n,&bn);CHKERRQ(ierr); 1901660d5466SHong Zhang ierr = PetscBLASIntCast(a->A->rmap->n,&am);CHKERRQ(ierr); 1902adc7a786SHong Zhang ierr = PetscBLASIntCast(A->cmap->N,&aN);CHKERRQ(ierr); 1903adc7a786SHong Zhang PetscStackCallBLAS("BLASgemm",BLASgemm_("T","N",&an,&bn,&am,&_DOne,aseq->v,&aseq->lda,bseq->v,&bseq->lda,&_DZero,atbarray,&aN)); 1904cb20be35SHong Zhang 1905cb20be35SHong Zhang ierr = MatGetOwnershipRanges(C,&ranges);CHKERRQ(ierr); 1906c5ef1628SHong Zhang for (i=0; i<size; i++) recvcounts[i] = (ranges[i+1] - ranges[i])*cN; 1907cb20be35SHong Zhang 1908660d5466SHong Zhang /* arrange atbarray into sendbuf */ 1909cb20be35SHong Zhang k = 0; 1910cb20be35SHong Zhang for (proc=0; proc<size; proc++) { 1911baa3c1c6SHong Zhang for (j=0; j<cN; j++) { 1912c5ef1628SHong Zhang for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*cM]; 1913cb20be35SHong Zhang } 1914cb20be35SHong Zhang } 1915c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 1916660d5466SHong Zhang ierr = MatDenseGetArray(c->A,&carray);CHKERRQ(ierr); 19173462b7efSHong Zhang ierr = MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm);CHKERRQ(ierr); 1918660d5466SHong Zhang ierr = MatDenseRestoreArray(c->A,&carray);CHKERRQ(ierr); 1919cb20be35SHong Zhang PetscFunctionReturn(0); 1920cb20be35SHong Zhang } 1921cb20be35SHong Zhang 1922cb20be35SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C) 1923cb20be35SHong Zhang { 1924cb20be35SHong Zhang PetscErrorCode ierr; 1925baa3c1c6SHong Zhang Mat Cdense; 1926cb20be35SHong Zhang MPI_Comm comm; 1927baa3c1c6SHong Zhang PetscMPIInt size; 1928660d5466SHong Zhang PetscInt cm=A->cmap->n,cM,cN=B->cmap->N; 1929baa3c1c6SHong Zhang Mat_MPIDense *c; 1930baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 1931cb20be35SHong Zhang 1932cb20be35SHong Zhang PetscFunctionBegin; 1933baa3c1c6SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 1934cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 1935cb20be35SHong Zhang SETERRQ4(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 1936cb20be35SHong Zhang } 1937cb20be35SHong Zhang 1938baa3c1c6SHong Zhang /* create matrix product Cdense */ 1939baa3c1c6SHong Zhang ierr = MatCreate(comm,&Cdense);CHKERRQ(ierr); 1940660d5466SHong Zhang ierr = MatSetSizes(Cdense,cm,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 1941baa3c1c6SHong Zhang ierr = MatSetType(Cdense,MATMPIDENSE);CHKERRQ(ierr); 1942baa3c1c6SHong Zhang ierr = MatMPIDenseSetPreallocation(Cdense,NULL);CHKERRQ(ierr); 1943baa3c1c6SHong Zhang ierr = MatAssemblyBegin(Cdense,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1944baa3c1c6SHong Zhang ierr = MatAssemblyEnd(Cdense,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1945baa3c1c6SHong Zhang *C = Cdense; 1946baa3c1c6SHong Zhang 1947baa3c1c6SHong Zhang /* create data structure for reuse Cdense */ 1948baa3c1c6SHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1949baa3c1c6SHong Zhang ierr = PetscNew(&atb);CHKERRQ(ierr); 1950660d5466SHong Zhang cM = Cdense->rmap->N; 1951c5ef1628SHong Zhang ierr = PetscMalloc3(cM*cN,&atb->sendbuf,cM*cN,&atb->atbarray,size,&atb->recvcounts);CHKERRQ(ierr); 1952baa3c1c6SHong Zhang 1953baa3c1c6SHong Zhang c = (Mat_MPIDense*)Cdense->data; 1954baa3c1c6SHong Zhang c->atbdense = atb; 1955baa3c1c6SHong Zhang atb->destroy = Cdense->ops->destroy; 1956baa3c1c6SHong Zhang Cdense->ops->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 1957cb20be35SHong Zhang PetscFunctionReturn(0); 1958cb20be35SHong Zhang } 1959cb20be35SHong Zhang 1960cb20be35SHong Zhang PetscErrorCode MatTransposeMatMult_MPIDense_MPIDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 1961cb20be35SHong Zhang { 1962cb20be35SHong Zhang PetscErrorCode ierr; 1963cb20be35SHong Zhang 1964cb20be35SHong Zhang PetscFunctionBegin; 1965cb20be35SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 1966cb20be35SHong Zhang ierr = MatTransposeMatMultSymbolic_MPIDense_MPIDense(A,B,fill,C);CHKERRQ(ierr); 1967cb20be35SHong Zhang } 1968cb20be35SHong Zhang ierr = MatTransposeMatMultNumeric_MPIDense_MPIDense(A,B,*C);CHKERRQ(ierr); 1969cb20be35SHong Zhang PetscFunctionReturn(0); 1970cb20be35SHong Zhang } 1971320f2790SHong Zhang 1972320f2790SHong Zhang PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(Mat A) 1973320f2790SHong Zhang { 1974320f2790SHong Zhang PetscErrorCode ierr; 1975320f2790SHong Zhang Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1976320f2790SHong Zhang Mat_MatMultDense *ab = a->abdense; 1977320f2790SHong Zhang 1978320f2790SHong Zhang PetscFunctionBegin; 1979320f2790SHong Zhang ierr = MatDestroy(&ab->Ce);CHKERRQ(ierr); 1980320f2790SHong Zhang ierr = MatDestroy(&ab->Ae);CHKERRQ(ierr); 1981320f2790SHong Zhang ierr = MatDestroy(&ab->Be);CHKERRQ(ierr); 1982320f2790SHong Zhang 1983320f2790SHong Zhang ierr = (ab->destroy)(A);CHKERRQ(ierr); 1984320f2790SHong Zhang ierr = PetscFree(ab);CHKERRQ(ierr); 1985320f2790SHong Zhang PetscFunctionReturn(0); 1986320f2790SHong Zhang } 1987320f2790SHong Zhang 19885242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1989320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 1990320f2790SHong Zhang { 1991320f2790SHong Zhang PetscErrorCode ierr; 1992320f2790SHong Zhang Mat_MPIDense *c=(Mat_MPIDense*)C->data; 1993320f2790SHong Zhang Mat_MatMultDense *ab=c->abdense; 1994320f2790SHong Zhang 1995320f2790SHong Zhang PetscFunctionBegin; 1996de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae);CHKERRQ(ierr); 1997de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be);CHKERRQ(ierr); 1998320f2790SHong Zhang ierr = MatMatMultNumeric(ab->Ae,ab->Be,ab->Ce);CHKERRQ(ierr); 1999de0a22f0SHong Zhang ierr = MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C);CHKERRQ(ierr); 2000320f2790SHong Zhang PetscFunctionReturn(0); 2001320f2790SHong Zhang } 2002320f2790SHong Zhang 2003320f2790SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C) 2004320f2790SHong Zhang { 2005320f2790SHong Zhang PetscErrorCode ierr; 2006320f2790SHong Zhang Mat Ae,Be,Ce; 2007320f2790SHong Zhang Mat_MPIDense *c; 2008320f2790SHong Zhang Mat_MatMultDense *ab; 2009320f2790SHong Zhang 2010320f2790SHong Zhang PetscFunctionBegin; 2011320f2790SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) { 2012378336b6SHong Zhang SETERRQ4(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2013320f2790SHong Zhang } 2014320f2790SHong Zhang 2015320f2790SHong Zhang /* convert A and B to Elemental matrices Ae and Be */ 2016320f2790SHong Zhang ierr = MatConvert(A,MATELEMENTAL,MAT_INITIAL_MATRIX, &Ae);CHKERRQ(ierr); 2017320f2790SHong Zhang ierr = MatConvert(B,MATELEMENTAL,MAT_INITIAL_MATRIX, &Be);CHKERRQ(ierr); 2018320f2790SHong Zhang 2019320f2790SHong Zhang /* Ce = Ae*Be */ 2020320f2790SHong Zhang ierr = MatMatMultSymbolic(Ae,Be,fill,&Ce);CHKERRQ(ierr); 2021320f2790SHong Zhang ierr = MatMatMultNumeric(Ae,Be,Ce);CHKERRQ(ierr); 2022320f2790SHong Zhang 2023320f2790SHong Zhang /* convert Ce to C */ 2024320f2790SHong Zhang ierr = MatConvert(Ce,MATMPIDENSE,MAT_INITIAL_MATRIX,C);CHKERRQ(ierr); 2025320f2790SHong Zhang 2026320f2790SHong Zhang /* create data structure for reuse Cdense */ 2027320f2790SHong Zhang ierr = PetscNew(&ab);CHKERRQ(ierr); 2028320f2790SHong Zhang c = (Mat_MPIDense*)(*C)->data; 2029320f2790SHong Zhang c->abdense = ab; 2030320f2790SHong Zhang 2031320f2790SHong Zhang ab->Ae = Ae; 2032320f2790SHong Zhang ab->Be = Be; 2033320f2790SHong Zhang ab->Ce = Ce; 2034320f2790SHong Zhang ab->destroy = (*C)->ops->destroy; 2035320f2790SHong Zhang (*C)->ops->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 20369775878aSHong Zhang (*C)->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 2037320f2790SHong Zhang PetscFunctionReturn(0); 2038320f2790SHong Zhang } 2039320f2790SHong Zhang 2040150d2497SBarry Smith PETSC_INTERN PetscErrorCode MatMatMult_MPIDense_MPIDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 2041320f2790SHong Zhang { 2042320f2790SHong Zhang PetscErrorCode ierr; 2043320f2790SHong Zhang 2044320f2790SHong Zhang PetscFunctionBegin; 2045320f2790SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* simbolic product includes numeric product */ 204657299f2fSHong Zhang ierr = PetscLogEventBegin(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 2047320f2790SHong Zhang ierr = MatMatMultSymbolic_MPIDense_MPIDense(A,B,fill,C);CHKERRQ(ierr); 204857299f2fSHong Zhang ierr = PetscLogEventEnd(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 2049320f2790SHong Zhang } else { 205057299f2fSHong Zhang ierr = PetscLogEventBegin(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 2051320f2790SHong Zhang ierr = MatMatMultNumeric_MPIDense_MPIDense(A,B,*C);CHKERRQ(ierr); 205257299f2fSHong Zhang ierr = PetscLogEventEnd(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 2053320f2790SHong Zhang } 2054320f2790SHong Zhang PetscFunctionReturn(0); 2055320f2790SHong Zhang } 20565242a7b1SHong Zhang #endif 205786aefd0dSHong Zhang 2058