1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 4ed3cc1f0SBarry Smith */ 5ed3cc1f0SBarry Smith 6c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 78949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 8baa3c1c6SHong Zhang #include <petscblaslapack.h> 98965ea79SLois Curfman McInnes 10ab92ecdeSBarry Smith /*@ 11ab92ecdeSBarry Smith 12ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 13ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 14ab92ecdeSBarry Smith 15ab92ecdeSBarry Smith Input Parameter: 16ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 17ab92ecdeSBarry Smith 18ab92ecdeSBarry Smith Output Parameter: 19ab92ecdeSBarry Smith . B - the inner matrix 20ab92ecdeSBarry Smith 218e6c10adSSatish Balay Level: intermediate 228e6c10adSSatish Balay 23ab92ecdeSBarry Smith @*/ 24ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 25ab92ecdeSBarry Smith { 26ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 27ab92ecdeSBarry Smith PetscErrorCode ierr; 28ace3abfcSBarry Smith PetscBool flg; 29ab92ecdeSBarry Smith 30ab92ecdeSBarry Smith PetscFunctionBegin; 31251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr); 322205254eSKarl Rupp if (flg) *B = mat->A; 332205254eSKarl Rupp else *B = A; 34ab92ecdeSBarry Smith PetscFunctionReturn(0); 35ab92ecdeSBarry Smith } 36ab92ecdeSBarry Smith 37ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 38ba8c8a56SBarry Smith { 39ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 40ba8c8a56SBarry Smith PetscErrorCode ierr; 41d0f46423SBarry Smith PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 42ba8c8a56SBarry Smith 43ba8c8a56SBarry Smith PetscFunctionBegin; 44e7e72b3dSBarry Smith if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 45ba8c8a56SBarry Smith lrow = row - rstart; 46ba8c8a56SBarry Smith ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr); 47ba8c8a56SBarry Smith PetscFunctionReturn(0); 48ba8c8a56SBarry Smith } 49ba8c8a56SBarry Smith 50ba8c8a56SBarry Smith PetscErrorCode MatRestoreRow_MPIDense(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 51ba8c8a56SBarry Smith { 52ba8c8a56SBarry Smith PetscErrorCode ierr; 53ba8c8a56SBarry Smith 54ba8c8a56SBarry Smith PetscFunctionBegin; 55ba8c8a56SBarry Smith if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);} 56ba8c8a56SBarry Smith if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);} 57ba8c8a56SBarry Smith PetscFunctionReturn(0); 58ba8c8a56SBarry Smith } 59ba8c8a56SBarry Smith 6011bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A,Mat *a) 610de54da6SSatish Balay { 620de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 636849ba73SBarry Smith PetscErrorCode ierr; 64d0f46423SBarry Smith PetscInt m = A->rmap->n,rstart = A->rmap->rstart; 6587828ca2SBarry Smith PetscScalar *array; 660de54da6SSatish Balay MPI_Comm comm; 6711bd1e4dSLisandro Dalcin Mat B; 680de54da6SSatish Balay 690de54da6SSatish Balay PetscFunctionBegin; 70e32f2f54SBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported."); 710de54da6SSatish Balay 7211bd1e4dSLisandro Dalcin ierr = PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B);CHKERRQ(ierr); 7311bd1e4dSLisandro Dalcin if (!B) { 740de54da6SSatish Balay ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr); 7511bd1e4dSLisandro Dalcin ierr = MatCreate(comm,&B);CHKERRQ(ierr); 7611bd1e4dSLisandro Dalcin ierr = MatSetSizes(B,m,m,m,m);CHKERRQ(ierr); 7711bd1e4dSLisandro Dalcin ierr = MatSetType(B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr); 788c778c55SBarry Smith ierr = MatDenseGetArray(mdn->A,&array);CHKERRQ(ierr); 7911bd1e4dSLisandro Dalcin ierr = MatSeqDenseSetPreallocation(B,array+m*rstart);CHKERRQ(ierr); 808c778c55SBarry Smith ierr = MatDenseRestoreArray(mdn->A,&array);CHKERRQ(ierr); 8111bd1e4dSLisandro Dalcin ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 8211bd1e4dSLisandro Dalcin ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 8311bd1e4dSLisandro Dalcin ierr = PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B);CHKERRQ(ierr); 8411bd1e4dSLisandro Dalcin *a = B; 8511bd1e4dSLisandro Dalcin ierr = MatDestroy(&B);CHKERRQ(ierr); 862205254eSKarl Rupp } else *a = B; 870de54da6SSatish Balay PetscFunctionReturn(0); 880de54da6SSatish Balay } 890de54da6SSatish Balay 9013f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 918965ea79SLois Curfman McInnes { 9239b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 93dfbe8321SBarry Smith PetscErrorCode ierr; 94d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 95ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 968965ea79SLois Curfman McInnes 973a40ed3dSBarry Smith PetscFunctionBegin; 988965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 995ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 100e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1018965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1028965ea79SLois Curfman McInnes row = idxm[i] - rstart; 10339b7565bSBarry Smith if (roworiented) { 10439b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr); 1053a40ed3dSBarry Smith } else { 1068965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1075ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 108e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 10939b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr); 11039b7565bSBarry Smith } 1118965ea79SLois Curfman McInnes } 1122205254eSKarl Rupp } else if (!A->donotstash) { 1135080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 11439b7565bSBarry Smith if (roworiented) { 115b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 116d36fbae8SSatish Balay } else { 117b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 11839b7565bSBarry Smith } 119b49de8d1SLois Curfman McInnes } 120b49de8d1SLois Curfman McInnes } 1213a40ed3dSBarry Smith PetscFunctionReturn(0); 122b49de8d1SLois Curfman McInnes } 123b49de8d1SLois Curfman McInnes 12413f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 125b49de8d1SLois Curfman McInnes { 126b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 127dfbe8321SBarry Smith PetscErrorCode ierr; 128d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 129b49de8d1SLois Curfman McInnes 1303a40ed3dSBarry Smith PetscFunctionBegin; 131b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 132e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */ 133e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 134b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 135b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 136b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 137e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */ 138e7e72b3dSBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 139b49de8d1SLois Curfman McInnes ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr); 140b49de8d1SLois Curfman McInnes } 141e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 1428965ea79SLois Curfman McInnes } 1433a40ed3dSBarry Smith PetscFunctionReturn(0); 1448965ea79SLois Curfman McInnes } 1458965ea79SLois Curfman McInnes 14649a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A,PetscInt *lda) 14749a6ff4bSBarry Smith { 14849a6ff4bSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 14949a6ff4bSBarry Smith PetscErrorCode ierr; 15049a6ff4bSBarry Smith 15149a6ff4bSBarry Smith PetscFunctionBegin; 15249a6ff4bSBarry Smith ierr = MatDenseGetLDA(a->A,lda);CHKERRQ(ierr); 15349a6ff4bSBarry Smith PetscFunctionReturn(0); 15449a6ff4bSBarry Smith } 15549a6ff4bSBarry Smith 156d3042a70SBarry Smith static PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar *array[]) 157ff14e315SSatish Balay { 158ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 159dfbe8321SBarry Smith PetscErrorCode ierr; 160ff14e315SSatish Balay 1613a40ed3dSBarry Smith PetscFunctionBegin; 1628c778c55SBarry Smith ierr = MatDenseGetArray(a->A,array);CHKERRQ(ierr); 1633a40ed3dSBarry Smith PetscFunctionReturn(0); 164ff14e315SSatish Balay } 165ff14e315SSatish Balay 1668572280aSBarry Smith static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A,const PetscScalar *array[]) 1678572280aSBarry Smith { 1688572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1698572280aSBarry Smith PetscErrorCode ierr; 1708572280aSBarry Smith 1718572280aSBarry Smith PetscFunctionBegin; 1728572280aSBarry Smith ierr = MatDenseGetArrayRead(a->A,array);CHKERRQ(ierr); 1738572280aSBarry Smith PetscFunctionReturn(0); 1748572280aSBarry Smith } 1758572280aSBarry Smith 176d3042a70SBarry Smith static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A,const PetscScalar array[]) 177d3042a70SBarry Smith { 178d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 179d3042a70SBarry Smith PetscErrorCode ierr; 180d3042a70SBarry Smith 181d3042a70SBarry Smith PetscFunctionBegin; 182d3042a70SBarry Smith ierr = MatDensePlaceArray(a->A,array);CHKERRQ(ierr); 183d3042a70SBarry Smith PetscFunctionReturn(0); 184d3042a70SBarry Smith } 185d3042a70SBarry Smith 186d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_MPIDense(Mat A) 187d3042a70SBarry Smith { 188d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 189d3042a70SBarry Smith PetscErrorCode ierr; 190d3042a70SBarry Smith 191d3042a70SBarry Smith PetscFunctionBegin; 192d3042a70SBarry Smith ierr = MatDenseResetArray(a->A);CHKERRQ(ierr); 193d3042a70SBarry Smith PetscFunctionReturn(0); 194d3042a70SBarry Smith } 195d3042a70SBarry Smith 1967dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B) 197ca3fa75bSLois Curfman McInnes { 198ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 199ca3fa75bSLois Curfman McInnes Mat_SeqDense *lmat = (Mat_SeqDense*)mat->A->data; 2006849ba73SBarry Smith PetscErrorCode ierr; 2014aa3045dSJed Brown PetscInt i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols; 2025d0c19d7SBarry Smith const PetscInt *irow,*icol; 20387828ca2SBarry Smith PetscScalar *av,*bv,*v = lmat->v; 204ca3fa75bSLois Curfman McInnes Mat newmat; 2054aa3045dSJed Brown IS iscol_local; 20642a884f0SBarry Smith MPI_Comm comm_is,comm_mat; 207ca3fa75bSLois Curfman McInnes 208ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 20942a884f0SBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm_mat);CHKERRQ(ierr); 21042a884f0SBarry Smith ierr = PetscObjectGetComm((PetscObject)iscol,&comm_is);CHKERRQ(ierr); 21142a884f0SBarry Smith if (comm_mat != comm_is) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"IS communicator must match matrix communicator"); 21242a884f0SBarry Smith 2134aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 214ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 2154aa3045dSJed Brown ierr = ISGetIndices(iscol_local,&icol);CHKERRQ(ierr); 216b9b97703SBarry Smith ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 217b9b97703SBarry Smith ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 2184aa3045dSJed Brown ierr = ISGetSize(iscol,&Ncols);CHKERRQ(ierr); /* global number of columns, size of iscol_local */ 219ca3fa75bSLois Curfman McInnes 220ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 2217eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 2227eba5e9cSLois Curfman McInnes original matrix! */ 223ca3fa75bSLois Curfman McInnes 224ca3fa75bSLois Curfman McInnes ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr); 2257eba5e9cSLois Curfman McInnes ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 226ca3fa75bSLois Curfman McInnes 227ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 228ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 229e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 2307eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 231ca3fa75bSLois Curfman McInnes newmat = *B; 232ca3fa75bSLois Curfman McInnes } else { 233ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 234ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr); 2354aa3045dSJed Brown ierr = MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols);CHKERRQ(ierr); 2367adad957SLisandro Dalcin ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 2370298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 238ca3fa75bSLois Curfman McInnes } 239ca3fa75bSLois Curfman McInnes 240ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 241ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 242ca3fa75bSLois Curfman McInnes bv = ((Mat_SeqDense*)newmatd->A->data)->v; 243ca3fa75bSLois Curfman McInnes 2444aa3045dSJed Brown for (i=0; i<Ncols; i++) { 24525a33276SHong Zhang av = v + ((Mat_SeqDense*)mat->A->data)->lda*icol[i]; 246ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 2477eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 248ca3fa75bSLois Curfman McInnes } 249ca3fa75bSLois Curfman McInnes } 250ca3fa75bSLois Curfman McInnes 251ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 252ca3fa75bSLois Curfman McInnes ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 253ca3fa75bSLois Curfman McInnes ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 254ca3fa75bSLois Curfman McInnes 255ca3fa75bSLois Curfman McInnes /* Free work space */ 256ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 2575bdf786aSShri Abhyankar ierr = ISRestoreIndices(iscol_local,&icol);CHKERRQ(ierr); 25832bb1f2dSLisandro Dalcin ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 259ca3fa75bSLois Curfman McInnes *B = newmat; 260ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 261ca3fa75bSLois Curfman McInnes } 262ca3fa75bSLois Curfman McInnes 2638c778c55SBarry Smith PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar *array[]) 264ff14e315SSatish Balay { 26573a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 26673a71a0fSBarry Smith PetscErrorCode ierr; 26773a71a0fSBarry Smith 2683a40ed3dSBarry Smith PetscFunctionBegin; 2698c778c55SBarry Smith ierr = MatDenseRestoreArray(a->A,array);CHKERRQ(ierr); 2703a40ed3dSBarry Smith PetscFunctionReturn(0); 271ff14e315SSatish Balay } 272ff14e315SSatish Balay 2738572280aSBarry Smith PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A,const PetscScalar *array[]) 2748572280aSBarry Smith { 2758572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2768572280aSBarry Smith PetscErrorCode ierr; 2778572280aSBarry Smith 2788572280aSBarry Smith PetscFunctionBegin; 2798572280aSBarry Smith ierr = MatDenseRestoreArrayRead(a->A,array);CHKERRQ(ierr); 2808572280aSBarry Smith PetscFunctionReturn(0); 2818572280aSBarry Smith } 2828572280aSBarry Smith 283dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 2848965ea79SLois Curfman McInnes { 28539ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 286dfbe8321SBarry Smith PetscErrorCode ierr; 28713f74950SBarry Smith PetscInt nstash,reallocs; 2888965ea79SLois Curfman McInnes 2893a40ed3dSBarry Smith PetscFunctionBegin; 290910cf402Sprj- if (mdn->donotstash || mat->nooffprocentries) return(0); 2918965ea79SLois Curfman McInnes 292d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 2938798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 294ae15b995SBarry Smith ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 2953a40ed3dSBarry Smith PetscFunctionReturn(0); 2968965ea79SLois Curfman McInnes } 2978965ea79SLois Curfman McInnes 298dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 2998965ea79SLois Curfman McInnes { 30039ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 3016849ba73SBarry Smith PetscErrorCode ierr; 30213f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 30313f74950SBarry Smith PetscMPIInt n; 30487828ca2SBarry Smith PetscScalar *val; 3058965ea79SLois Curfman McInnes 3063a40ed3dSBarry Smith PetscFunctionBegin; 307910cf402Sprj- if (!mdn->donotstash && !mat->nooffprocentries) { 3088965ea79SLois Curfman McInnes /* wait on receives */ 3097ef1d9bdSSatish Balay while (1) { 3108798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 3117ef1d9bdSSatish Balay if (!flg) break; 3128965ea79SLois Curfman McInnes 3137ef1d9bdSSatish Balay for (i=0; i<n;) { 3147ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 3152205254eSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 3162205254eSKarl Rupp if (row[j] != rstart) break; 3172205254eSKarl Rupp } 3187ef1d9bdSSatish Balay if (j < n) ncols = j-i; 3197ef1d9bdSSatish Balay else ncols = n-i; 3207ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 3214b4eb8d3SJed Brown ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 3227ef1d9bdSSatish Balay i = j; 3238965ea79SLois Curfman McInnes } 3247ef1d9bdSSatish Balay } 3258798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 326910cf402Sprj- } 3278965ea79SLois Curfman McInnes 32839ddd567SLois Curfman McInnes ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr); 32939ddd567SLois Curfman McInnes ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr); 3308965ea79SLois Curfman McInnes 3316d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 33239ddd567SLois Curfman McInnes ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 3338965ea79SLois Curfman McInnes } 3343a40ed3dSBarry Smith PetscFunctionReturn(0); 3358965ea79SLois Curfman McInnes } 3368965ea79SLois Curfman McInnes 337dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 3388965ea79SLois Curfman McInnes { 339dfbe8321SBarry Smith PetscErrorCode ierr; 34039ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3413a40ed3dSBarry Smith 3423a40ed3dSBarry Smith PetscFunctionBegin; 3433a40ed3dSBarry Smith ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 3443a40ed3dSBarry Smith PetscFunctionReturn(0); 3458965ea79SLois Curfman McInnes } 3468965ea79SLois Curfman McInnes 3478965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the 3488965ea79SLois Curfman McInnes matrix is square and the column and row owerships are identical. 3498965ea79SLois Curfman McInnes This is a BUG. The only way to fix it seems to be to access 3503501a2bdSLois Curfman McInnes mdn->A and mdn->B directly and not through the MatZeroRows() 3518965ea79SLois Curfman McInnes routine. 3528965ea79SLois Curfman McInnes */ 3532b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 3548965ea79SLois Curfman McInnes { 35539ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3566849ba73SBarry Smith PetscErrorCode ierr; 357d0f46423SBarry Smith PetscInt i,*owners = A->rmap->range; 35876ec1555SBarry Smith PetscInt *sizes,j,idx,nsends; 35913f74950SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 3607adad957SLisandro Dalcin PetscInt *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source; 36113f74950SBarry Smith PetscInt *lens,*lrows,*values; 36213f74950SBarry Smith PetscMPIInt n,imdex,rank = l->rank,size = l->size; 363ce94432eSBarry Smith MPI_Comm comm; 3648965ea79SLois Curfman McInnes MPI_Request *send_waits,*recv_waits; 3658965ea79SLois Curfman McInnes MPI_Status recv_status,*send_status; 366ace3abfcSBarry Smith PetscBool found; 36797b48c8fSBarry Smith const PetscScalar *xx; 36897b48c8fSBarry Smith PetscScalar *bb; 3698965ea79SLois Curfman McInnes 3703a40ed3dSBarry Smith PetscFunctionBegin; 371ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 372ce94432eSBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(comm,PETSC_ERR_SUP,"Only handles square matrices"); 373b9679d65SBarry Smith if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only handles matrices with identical column and row ownership"); 3748965ea79SLois Curfman McInnes /* first count number of contributors to each processor */ 375f628708eSJed Brown ierr = PetscCalloc1(2*size,&sizes);CHKERRQ(ierr); 376037dbc42SBarry Smith ierr = PetscMalloc1(N+1,&owner);CHKERRQ(ierr); /* see note*/ 3778965ea79SLois Curfman McInnes for (i=0; i<N; i++) { 3788965ea79SLois Curfman McInnes idx = rows[i]; 37935d8aa7fSBarry Smith found = PETSC_FALSE; 3808965ea79SLois Curfman McInnes for (j=0; j<size; j++) { 3818965ea79SLois Curfman McInnes if (idx >= owners[j] && idx < owners[j+1]) { 38276ec1555SBarry Smith sizes[2*j]++; sizes[2*j+1] = 1; owner[i] = j; found = PETSC_TRUE; break; 3838965ea79SLois Curfman McInnes } 3848965ea79SLois Curfman McInnes } 385e32f2f54SBarry Smith if (!found) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 3868965ea79SLois Curfman McInnes } 3872205254eSKarl Rupp nsends = 0; 38876ec1555SBarry Smith for (i=0; i<size; i++) nsends += sizes[2*i+1]; 3898965ea79SLois Curfman McInnes 3908965ea79SLois Curfman McInnes /* inform other processors of number of messages and max length*/ 39176ec1555SBarry Smith ierr = PetscMaxSum(comm,sizes,&nmax,&nrecvs);CHKERRQ(ierr); 3928965ea79SLois Curfman McInnes 3938965ea79SLois Curfman McInnes /* post receives: */ 394785e854fSJed Brown ierr = PetscMalloc1((nrecvs+1)*(nmax+1),&rvalues);CHKERRQ(ierr); 395854ce69bSBarry Smith ierr = PetscMalloc1(nrecvs+1,&recv_waits);CHKERRQ(ierr); 3968965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 39713f74950SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 3988965ea79SLois Curfman McInnes } 3998965ea79SLois Curfman McInnes 4008965ea79SLois Curfman McInnes /* do sends: 4018965ea79SLois Curfman McInnes 1) starts[i] gives the starting index in svalues for stuff going to 4028965ea79SLois Curfman McInnes the ith processor 4038965ea79SLois Curfman McInnes */ 404854ce69bSBarry Smith ierr = PetscMalloc1(N+1,&svalues);CHKERRQ(ierr); 405854ce69bSBarry Smith ierr = PetscMalloc1(nsends+1,&send_waits);CHKERRQ(ierr); 406854ce69bSBarry Smith ierr = PetscMalloc1(size+1,&starts);CHKERRQ(ierr); 4078965ea79SLois Curfman McInnes 4088965ea79SLois Curfman McInnes starts[0] = 0; 40976ec1555SBarry Smith for (i=1; i<size; i++) starts[i] = starts[i-1] + sizes[2*i-2]; 4102205254eSKarl Rupp for (i=0; i<N; i++) svalues[starts[owner[i]]++] = rows[i]; 4112205254eSKarl Rupp 4122205254eSKarl Rupp starts[0] = 0; 41376ec1555SBarry Smith for (i=1; i<size+1; i++) starts[i] = starts[i-1] + sizes[2*i-2]; 4148965ea79SLois Curfman McInnes count = 0; 4158965ea79SLois Curfman McInnes for (i=0; i<size; i++) { 41676ec1555SBarry Smith if (sizes[2*i+1]) { 41776ec1555SBarry Smith ierr = MPI_Isend(svalues+starts[i],sizes[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 4188965ea79SLois Curfman McInnes } 4198965ea79SLois Curfman McInnes } 420606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 4218965ea79SLois Curfman McInnes 4228965ea79SLois Curfman McInnes base = owners[rank]; 4238965ea79SLois Curfman McInnes 4248965ea79SLois Curfman McInnes /* wait on receives */ 425dcca6d9dSJed Brown ierr = PetscMalloc2(nrecvs,&lens,nrecvs,&source);CHKERRQ(ierr); 42674ed9c26SBarry Smith count = nrecvs; 42774ed9c26SBarry Smith slen = 0; 4288965ea79SLois Curfman McInnes while (count) { 429ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 4308965ea79SLois Curfman McInnes /* unpack receives into our local space */ 43113f74950SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 4322205254eSKarl Rupp 4338965ea79SLois Curfman McInnes source[imdex] = recv_status.MPI_SOURCE; 4348965ea79SLois Curfman McInnes lens[imdex] = n; 4358965ea79SLois Curfman McInnes slen += n; 4368965ea79SLois Curfman McInnes count--; 4378965ea79SLois Curfman McInnes } 438606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 4398965ea79SLois Curfman McInnes 4408965ea79SLois Curfman McInnes /* move the data into the send scatter */ 441854ce69bSBarry Smith ierr = PetscMalloc1(slen+1,&lrows);CHKERRQ(ierr); 4428965ea79SLois Curfman McInnes count = 0; 4438965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 4448965ea79SLois Curfman McInnes values = rvalues + i*nmax; 4458965ea79SLois Curfman McInnes for (j=0; j<lens[i]; j++) { 4468965ea79SLois Curfman McInnes lrows[count++] = values[j] - base; 4478965ea79SLois Curfman McInnes } 4488965ea79SLois Curfman McInnes } 449606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 45074ed9c26SBarry Smith ierr = PetscFree2(lens,source);CHKERRQ(ierr); 451606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 45276ec1555SBarry Smith ierr = PetscFree(sizes);CHKERRQ(ierr); 4538965ea79SLois Curfman McInnes 45497b48c8fSBarry Smith /* fix right hand side if needed */ 45597b48c8fSBarry Smith if (x && b) { 45697b48c8fSBarry Smith ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr); 45797b48c8fSBarry Smith ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 45897b48c8fSBarry Smith for (i=0; i<slen; i++) { 45997b48c8fSBarry Smith bb[lrows[i]] = diag*xx[lrows[i]]; 46097b48c8fSBarry Smith } 46197b48c8fSBarry Smith ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr); 46297b48c8fSBarry Smith ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 46397b48c8fSBarry Smith } 46497b48c8fSBarry Smith 4658965ea79SLois Curfman McInnes /* actually zap the local rows */ 466b9679d65SBarry Smith ierr = MatZeroRows(l->A,slen,lrows,0.0,0,0);CHKERRQ(ierr); 467e2eb51b1SBarry Smith if (diag != 0.0) { 468b9679d65SBarry Smith Mat_SeqDense *ll = (Mat_SeqDense*)l->A->data; 469b9679d65SBarry Smith PetscInt m = ll->lda, i; 470b9679d65SBarry Smith 471b9679d65SBarry Smith for (i=0; i<slen; i++) { 472b9679d65SBarry Smith ll->v[lrows[i] + m*(A->cmap->rstart + lrows[i])] = diag; 473b9679d65SBarry Smith } 474b9679d65SBarry Smith } 475606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 4768965ea79SLois Curfman McInnes 4778965ea79SLois Curfman McInnes /* wait on sends */ 4788965ea79SLois Curfman McInnes if (nsends) { 479785e854fSJed Brown ierr = PetscMalloc1(nsends,&send_status);CHKERRQ(ierr); 480ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 481606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 4828965ea79SLois Curfman McInnes } 483606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 484606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 4853a40ed3dSBarry Smith PetscFunctionReturn(0); 4868965ea79SLois Curfman McInnes } 4878965ea79SLois Curfman McInnes 488cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec); 489cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec); 490cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec); 491cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec); 492cc2e6a90SBarry Smith 493dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4948965ea79SLois Curfman McInnes { 49539ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 496dfbe8321SBarry Smith PetscErrorCode ierr; 497c456f294SBarry Smith 4983a40ed3dSBarry Smith PetscFunctionBegin; 499ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 500ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 501cc2e6a90SBarry Smith ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy);CHKERRQ(ierr); 5023a40ed3dSBarry Smith PetscFunctionReturn(0); 5038965ea79SLois Curfman McInnes } 5048965ea79SLois Curfman McInnes 505dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 5068965ea79SLois Curfman McInnes { 50739ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 508dfbe8321SBarry Smith PetscErrorCode ierr; 509c456f294SBarry Smith 5103a40ed3dSBarry Smith PetscFunctionBegin; 511ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 512ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 513cc2e6a90SBarry Smith ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr); 5143a40ed3dSBarry Smith PetscFunctionReturn(0); 5158965ea79SLois Curfman McInnes } 5168965ea79SLois Curfman McInnes 517dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 518096963f5SLois Curfman McInnes { 519096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 520dfbe8321SBarry Smith PetscErrorCode ierr; 52187828ca2SBarry Smith PetscScalar zero = 0.0; 522096963f5SLois Curfman McInnes 5233a40ed3dSBarry Smith PetscFunctionBegin; 5242dcb1b2aSMatthew Knepley ierr = VecSet(yy,zero);CHKERRQ(ierr); 525cc2e6a90SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 526ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 527ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 5283a40ed3dSBarry Smith PetscFunctionReturn(0); 529096963f5SLois Curfman McInnes } 530096963f5SLois Curfman McInnes 531dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 532096963f5SLois Curfman McInnes { 533096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 534dfbe8321SBarry Smith PetscErrorCode ierr; 535096963f5SLois Curfman McInnes 5363a40ed3dSBarry Smith PetscFunctionBegin; 5373501a2bdSLois Curfman McInnes ierr = VecCopy(yy,zz);CHKERRQ(ierr); 538cc2e6a90SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 539ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 540ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 5413a40ed3dSBarry Smith PetscFunctionReturn(0); 542096963f5SLois Curfman McInnes } 543096963f5SLois Curfman McInnes 544dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5458965ea79SLois Curfman McInnes { 54639ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 547096963f5SLois Curfman McInnes Mat_SeqDense *aloc = (Mat_SeqDense*)a->A->data; 548dfbe8321SBarry Smith PetscErrorCode ierr; 549d0f46423SBarry Smith PetscInt len,i,n,m = A->rmap->n,radd; 55087828ca2SBarry Smith PetscScalar *x,zero = 0.0; 551ed3cc1f0SBarry Smith 5523a40ed3dSBarry Smith PetscFunctionBegin; 5532dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 5541ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 555096963f5SLois Curfman McInnes ierr = VecGetSize(v,&n);CHKERRQ(ierr); 556e32f2f54SBarry Smith if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 557d0f46423SBarry Smith len = PetscMin(a->A->rmap->n,a->A->cmap->n); 558d0f46423SBarry Smith radd = A->rmap->rstart*m; 55944cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 560096963f5SLois Curfman McInnes x[i] = aloc->v[radd + i*m + i]; 561096963f5SLois Curfman McInnes } 5621ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 5633a40ed3dSBarry Smith PetscFunctionReturn(0); 5648965ea79SLois Curfman McInnes } 5658965ea79SLois Curfman McInnes 566dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5678965ea79SLois Curfman McInnes { 5683501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 569dfbe8321SBarry Smith PetscErrorCode ierr; 570ed3cc1f0SBarry Smith 5713a40ed3dSBarry Smith PetscFunctionBegin; 572aa482453SBarry Smith #if defined(PETSC_USE_LOG) 573d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N); 5748965ea79SLois Curfman McInnes #endif 5758798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 5766bf464f9SBarry Smith ierr = MatDestroy(&mdn->A);CHKERRQ(ierr); 5776bf464f9SBarry Smith ierr = VecDestroy(&mdn->lvec);CHKERRQ(ierr); 5786bf464f9SBarry Smith ierr = VecScatterDestroy(&mdn->Mvctx);CHKERRQ(ierr); 57901b82886SBarry Smith 580bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 581dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 5828baccfbdSHong Zhang 58349a6ff4bSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL);CHKERRQ(ierr); 5848baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr); 5858572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr); 5868572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL);CHKERRQ(ierr); 5878572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL);CHKERRQ(ierr); 588d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL);CHKERRQ(ierr); 589d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL);CHKERRQ(ierr); 5908baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 5918baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL);CHKERRQ(ierr); 5928baccfbdSHong Zhang #endif 593bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL);CHKERRQ(ierr); 5944222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5954222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",NULL);CHKERRQ(ierr); 596bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 597bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 59852c5f739Sprj- ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_nest_mpidense_C",NULL);CHKERRQ(ierr); 59952c5f739Sprj- ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_nest_mpidense_C",NULL);CHKERRQ(ierr); 6008baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 6018baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 60286aefd0dSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL);CHKERRQ(ierr); 60386aefd0dSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL);CHKERRQ(ierr); 6043a40ed3dSBarry Smith PetscFunctionReturn(0); 6058965ea79SLois Curfman McInnes } 60639ddd567SLois Curfman McInnes 60752c5f739Sprj- PETSC_INTERN PetscErrorCode MatView_SeqDense(Mat,PetscViewer); 60852c5f739Sprj- 6099804daf3SBarry Smith #include <petscdraw.h> 6106849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 6118965ea79SLois Curfman McInnes { 61239ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 613dfbe8321SBarry Smith PetscErrorCode ierr; 6147da1fb6eSBarry Smith PetscMPIInt rank = mdn->rank; 61519fd82e9SBarry Smith PetscViewerType vtype; 616ace3abfcSBarry Smith PetscBool iascii,isdraw; 617b0a32e0cSBarry Smith PetscViewer sviewer; 618f3ef73ceSBarry Smith PetscViewerFormat format; 6198965ea79SLois Curfman McInnes 6203a40ed3dSBarry Smith PetscFunctionBegin; 621251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 622251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 62332077d6dSBarry Smith if (iascii) { 624b0a32e0cSBarry Smith ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr); 625b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 626456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6274e220ebcSLois Curfman McInnes MatInfo info; 628888f2ed8SSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 6291575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 6307b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr); 631b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6321575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 6335d00a290SHong Zhang ierr = VecScatterView(mdn->Mvctx,viewer);CHKERRQ(ierr); 6343a40ed3dSBarry Smith PetscFunctionReturn(0); 635fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6363a40ed3dSBarry Smith PetscFunctionReturn(0); 6378965ea79SLois Curfman McInnes } 638f1af5d2fSBarry Smith } else if (isdraw) { 639b0a32e0cSBarry Smith PetscDraw draw; 640ace3abfcSBarry Smith PetscBool isnull; 641f1af5d2fSBarry Smith 642b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 643b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 644f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 645f1af5d2fSBarry Smith } 64677ed5343SBarry Smith 6477da1fb6eSBarry Smith { 6488965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 6498965ea79SLois Curfman McInnes Mat A; 650d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz; 651ba8c8a56SBarry Smith PetscInt *cols; 652ba8c8a56SBarry Smith PetscScalar *vals; 6538965ea79SLois Curfman McInnes 654ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 6558965ea79SLois Curfman McInnes if (!rank) { 656f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 6573a40ed3dSBarry Smith } else { 658f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 6598965ea79SLois Curfman McInnes } 6607adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 661878740d9SKris Buschelman ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr); 6620298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr); 6633bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 6648965ea79SLois Curfman McInnes 66539ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 66639ddd567SLois Curfman McInnes but it's quick for now */ 66751022da4SBarry Smith A->insertmode = INSERT_VALUES; 6682205254eSKarl Rupp 6692205254eSKarl Rupp row = mat->rmap->rstart; 6702205254eSKarl Rupp m = mdn->A->rmap->n; 6718965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 672ba8c8a56SBarry Smith ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 673ba8c8a56SBarry Smith ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 674ba8c8a56SBarry Smith ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 67539ddd567SLois Curfman McInnes row++; 6768965ea79SLois Curfman McInnes } 6778965ea79SLois Curfman McInnes 6786d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 6796d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 6803f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 681b9b97703SBarry Smith if (!rank) { 6821a9d3c3cSBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 6837da1fb6eSBarry Smith ierr = MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr); 6848965ea79SLois Curfman McInnes } 6853f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 686b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6876bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 6888965ea79SLois Curfman McInnes } 6893a40ed3dSBarry Smith PetscFunctionReturn(0); 6908965ea79SLois Curfman McInnes } 6918965ea79SLois Curfman McInnes 692dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 6938965ea79SLois Curfman McInnes { 694dfbe8321SBarry Smith PetscErrorCode ierr; 695ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw,issocket; 6968965ea79SLois Curfman McInnes 697433994e6SBarry Smith PetscFunctionBegin; 698251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 699251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 700251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 701251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 7020f5bd95cSBarry Smith 70332077d6dSBarry Smith if (iascii || issocket || isdraw) { 704f1af5d2fSBarry Smith ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 7050f5bd95cSBarry Smith } else if (isbinary) { 7068491ab44SLisandro Dalcin ierr = MatView_Dense_Binary(mat,viewer);CHKERRQ(ierr); 70711aeaf0aSBarry Smith } 7083a40ed3dSBarry Smith PetscFunctionReturn(0); 7098965ea79SLois Curfman McInnes } 7108965ea79SLois Curfman McInnes 711dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 7128965ea79SLois Curfman McInnes { 7133501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7143501a2bdSLois Curfman McInnes Mat mdn = mat->A; 715dfbe8321SBarry Smith PetscErrorCode ierr; 7163966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 7178965ea79SLois Curfman McInnes 7183a40ed3dSBarry Smith PetscFunctionBegin; 7194e220ebcSLois Curfman McInnes info->block_size = 1.0; 7202205254eSKarl Rupp 7214e220ebcSLois Curfman McInnes ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr); 7222205254eSKarl Rupp 7234e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 7244e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 7258965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7264e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7274e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7284e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7294e220ebcSLois Curfman McInnes info->memory = isend[3]; 7304e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7318965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 7323966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 7332205254eSKarl Rupp 7344e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7354e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7364e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7374e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7384e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7398965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 7403966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 7412205254eSKarl Rupp 7424e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7434e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7444e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7454e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7464e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7478965ea79SLois Curfman McInnes } 7484e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 7494e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 7504e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 7513a40ed3dSBarry Smith PetscFunctionReturn(0); 7528965ea79SLois Curfman McInnes } 7538965ea79SLois Curfman McInnes 754ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg) 7558965ea79SLois Curfman McInnes { 75639ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 757dfbe8321SBarry Smith PetscErrorCode ierr; 7588965ea79SLois Curfman McInnes 7593a40ed3dSBarry Smith PetscFunctionBegin; 76012c028f9SKris Buschelman switch (op) { 761512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 76212c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 76312c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 76443674050SBarry Smith MatCheckPreallocated(A,1); 7654e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 76612c028f9SKris Buschelman break; 76712c028f9SKris Buschelman case MAT_ROW_ORIENTED: 76843674050SBarry Smith MatCheckPreallocated(A,1); 7694e0d8c25SBarry Smith a->roworiented = flg; 7704e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 77112c028f9SKris Buschelman break; 7724e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 77313fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 77412c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 775071fcb05SBarry Smith case MAT_SORTED_FULL: 776290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 77712c028f9SKris Buschelman break; 77812c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 7794e0d8c25SBarry Smith a->donotstash = flg; 78012c028f9SKris Buschelman break; 78177e54ba9SKris Buschelman case MAT_SYMMETRIC: 78277e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 7839a4540c5SBarry Smith case MAT_HERMITIAN: 7849a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 785600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 7865d7aebe8SStefano Zampini case MAT_IGNORE_ZERO_ENTRIES: 787290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 78877e54ba9SKris Buschelman break; 78912c028f9SKris Buschelman default: 790e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 7913a40ed3dSBarry Smith } 7923a40ed3dSBarry Smith PetscFunctionReturn(0); 7938965ea79SLois Curfman McInnes } 7948965ea79SLois Curfman McInnes 7958965ea79SLois Curfman McInnes 796dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 7975b2fa520SLois Curfman McInnes { 7985b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 7995b2fa520SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 800bca11509SBarry Smith const PetscScalar *l,*r; 801bca11509SBarry Smith PetscScalar x,*v; 802dfbe8321SBarry Smith PetscErrorCode ierr; 803d0f46423SBarry Smith PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n; 8045b2fa520SLois Curfman McInnes 8055b2fa520SLois Curfman McInnes PetscFunctionBegin; 80672d926a5SLois Curfman McInnes ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr); 8075b2fa520SLois Curfman McInnes if (ll) { 80872d926a5SLois Curfman McInnes ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr); 809e32f2f54SBarry Smith if (s2a != s2) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %d != %d.", s2a, s2); 810bca11509SBarry Smith ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr); 8115b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 8125b2fa520SLois Curfman McInnes x = l[i]; 8135b2fa520SLois Curfman McInnes v = mat->v + i; 8145b2fa520SLois Curfman McInnes for (j=0; j<n; j++) { (*v) *= x; v+= m;} 8155b2fa520SLois Curfman McInnes } 816bca11509SBarry Smith ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr); 817efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 8185b2fa520SLois Curfman McInnes } 8195b2fa520SLois Curfman McInnes if (rr) { 820175be7b4SMatthew Knepley ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr); 821e32f2f54SBarry Smith if (s3a != s3) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3); 822ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 823ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 824bca11509SBarry Smith ierr = VecGetArrayRead(mdn->lvec,&r);CHKERRQ(ierr); 8255b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 8265b2fa520SLois Curfman McInnes x = r[i]; 8275b2fa520SLois Curfman McInnes v = mat->v + i*m; 8282205254eSKarl Rupp for (j=0; j<m; j++) (*v++) *= x; 8295b2fa520SLois Curfman McInnes } 830bca11509SBarry Smith ierr = VecRestoreArrayRead(mdn->lvec,&r);CHKERRQ(ierr); 831efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 8325b2fa520SLois Curfman McInnes } 8335b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8345b2fa520SLois Curfman McInnes } 8355b2fa520SLois Curfman McInnes 836dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 837096963f5SLois Curfman McInnes { 8383501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 8393501a2bdSLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 840dfbe8321SBarry Smith PetscErrorCode ierr; 84113f74950SBarry Smith PetscInt i,j; 842329f5518SBarry Smith PetscReal sum = 0.0; 84387828ca2SBarry Smith PetscScalar *v = mat->v; 8443501a2bdSLois Curfman McInnes 8453a40ed3dSBarry Smith PetscFunctionBegin; 8463501a2bdSLois Curfman McInnes if (mdn->size == 1) { 847064f8208SBarry Smith ierr = MatNorm(mdn->A,type,nrm);CHKERRQ(ierr); 8483501a2bdSLois Curfman McInnes } else { 8493501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 850d0f46423SBarry Smith for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) { 851329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 8523501a2bdSLois Curfman McInnes } 853b2566f29SBarry Smith ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 8548f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 855dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr); 8563a40ed3dSBarry Smith } else if (type == NORM_1) { 857329f5518SBarry Smith PetscReal *tmp,*tmp2; 858580bdb30SBarry Smith ierr = PetscCalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2);CHKERRQ(ierr); 859064f8208SBarry Smith *nrm = 0.0; 8603501a2bdSLois Curfman McInnes v = mat->v; 861d0f46423SBarry Smith for (j=0; j<mdn->A->cmap->n; j++) { 862d0f46423SBarry Smith for (i=0; i<mdn->A->rmap->n; i++) { 86367e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 8643501a2bdSLois Curfman McInnes } 8653501a2bdSLois Curfman McInnes } 866b2566f29SBarry Smith ierr = MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 867d0f46423SBarry Smith for (j=0; j<A->cmap->N; j++) { 868064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 8693501a2bdSLois Curfman McInnes } 8708627564fSBarry Smith ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr); 871d0f46423SBarry Smith ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr); 8723a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 873329f5518SBarry Smith PetscReal ntemp; 8743501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr); 875b2566f29SBarry Smith ierr = MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 876ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm"); 8773501a2bdSLois Curfman McInnes } 8783a40ed3dSBarry Smith PetscFunctionReturn(0); 8793501a2bdSLois Curfman McInnes } 8803501a2bdSLois Curfman McInnes 881fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 8823501a2bdSLois Curfman McInnes { 8833501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 8843501a2bdSLois Curfman McInnes Mat_SeqDense *Aloc = (Mat_SeqDense*)a->A->data; 8853501a2bdSLois Curfman McInnes Mat B; 886d0f46423SBarry Smith PetscInt M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart; 8876849ba73SBarry Smith PetscErrorCode ierr; 88813f74950SBarry Smith PetscInt j,i; 88987828ca2SBarry Smith PetscScalar *v; 8903501a2bdSLois Curfman McInnes 8913a40ed3dSBarry Smith PetscFunctionBegin; 892cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 893ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 894d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 8957adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 8960298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(B,NULL);CHKERRQ(ierr); 897fc4dec0aSBarry Smith } else { 898fc4dec0aSBarry Smith B = *matout; 899fc4dec0aSBarry Smith } 9003501a2bdSLois Curfman McInnes 901d0f46423SBarry Smith m = a->A->rmap->n; n = a->A->cmap->n; v = Aloc->v; 902785e854fSJed Brown ierr = PetscMalloc1(m,&rwork);CHKERRQ(ierr); 9033501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 9041acff37aSSatish Balay for (j=0; j<n; j++) { 9053501a2bdSLois Curfman McInnes ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr); 9063501a2bdSLois Curfman McInnes v += m; 9073501a2bdSLois Curfman McInnes } 908606d414cSSatish Balay ierr = PetscFree(rwork);CHKERRQ(ierr); 9096d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9106d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 911cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 9123501a2bdSLois Curfman McInnes *matout = B; 9133501a2bdSLois Curfman McInnes } else { 91428be2f97SBarry Smith ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr); 9153501a2bdSLois Curfman McInnes } 9163a40ed3dSBarry Smith PetscFunctionReturn(0); 917096963f5SLois Curfman McInnes } 918096963f5SLois Curfman McInnes 9196849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*); 92052c5f739Sprj- PETSC_INTERN PetscErrorCode MatScale_MPIDense(Mat,PetscScalar); 9218965ea79SLois Curfman McInnes 9224994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A) 923273d9f13SBarry Smith { 924dfbe8321SBarry Smith PetscErrorCode ierr; 925273d9f13SBarry Smith 926273d9f13SBarry Smith PetscFunctionBegin; 92718992e5dSStefano Zampini ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 92818992e5dSStefano Zampini ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 92918992e5dSStefano Zampini if (!A->preallocated) { 930273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr); 93118992e5dSStefano Zampini } 932273d9f13SBarry Smith PetscFunctionReturn(0); 933273d9f13SBarry Smith } 934273d9f13SBarry Smith 935488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 936488007eeSBarry Smith { 937488007eeSBarry Smith PetscErrorCode ierr; 938488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data; 939488007eeSBarry Smith 940488007eeSBarry Smith PetscFunctionBegin; 941488007eeSBarry Smith ierr = MatAXPY(A->A,alpha,B->A,str);CHKERRQ(ierr); 942a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 943488007eeSBarry Smith PetscFunctionReturn(0); 944488007eeSBarry Smith } 945488007eeSBarry Smith 9467087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat) 947ba337c44SJed Brown { 948ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 949ba337c44SJed Brown PetscErrorCode ierr; 950ba337c44SJed Brown 951ba337c44SJed Brown PetscFunctionBegin; 952ba337c44SJed Brown ierr = MatConjugate(a->A);CHKERRQ(ierr); 953ba337c44SJed Brown PetscFunctionReturn(0); 954ba337c44SJed Brown } 955ba337c44SJed Brown 956ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A) 957ba337c44SJed Brown { 958ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 959ba337c44SJed Brown PetscErrorCode ierr; 960ba337c44SJed Brown 961ba337c44SJed Brown PetscFunctionBegin; 962ba337c44SJed Brown ierr = MatRealPart(a->A);CHKERRQ(ierr); 963ba337c44SJed Brown PetscFunctionReturn(0); 964ba337c44SJed Brown } 965ba337c44SJed Brown 966ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 967ba337c44SJed Brown { 968ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 969ba337c44SJed Brown PetscErrorCode ierr; 970ba337c44SJed Brown 971ba337c44SJed Brown PetscFunctionBegin; 972ba337c44SJed Brown ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 973ba337c44SJed Brown PetscFunctionReturn(0); 974ba337c44SJed Brown } 975ba337c44SJed Brown 97649a6ff4bSBarry Smith static PetscErrorCode MatGetColumnVector_MPIDense(Mat A,Vec v,PetscInt col) 97749a6ff4bSBarry Smith { 97849a6ff4bSBarry Smith PetscErrorCode ierr; 97949a6ff4bSBarry Smith PetscScalar *x; 98049a6ff4bSBarry Smith const PetscScalar *a; 98149a6ff4bSBarry Smith PetscInt lda; 98249a6ff4bSBarry Smith 98349a6ff4bSBarry Smith PetscFunctionBegin; 98449a6ff4bSBarry Smith if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 98549a6ff4bSBarry Smith ierr = MatDenseGetLDA(A,&lda);CHKERRQ(ierr); 98649a6ff4bSBarry Smith ierr = MatDenseGetArrayRead(A,&a);CHKERRQ(ierr); 98749a6ff4bSBarry Smith ierr = VecGetArray(v,&x);CHKERRQ(ierr); 988580bdb30SBarry Smith ierr = PetscArraycpy(x,a+col*lda,A->rmap->n);CHKERRQ(ierr); 98949a6ff4bSBarry Smith ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 99049a6ff4bSBarry Smith ierr = MatDenseGetArrayRead(A,&a);CHKERRQ(ierr); 99149a6ff4bSBarry Smith PetscFunctionReturn(0); 99249a6ff4bSBarry Smith } 99349a6ff4bSBarry Smith 99452c5f739Sprj- PETSC_INTERN PetscErrorCode MatGetColumnNorms_SeqDense(Mat,NormType,PetscReal*); 99552c5f739Sprj- 9960716a85fSBarry Smith PetscErrorCode MatGetColumnNorms_MPIDense(Mat A,NormType type,PetscReal *norms) 9970716a85fSBarry Smith { 9980716a85fSBarry Smith PetscErrorCode ierr; 9990716a85fSBarry Smith PetscInt i,n; 10000716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*) A->data; 10010716a85fSBarry Smith PetscReal *work; 10020716a85fSBarry Smith 10030716a85fSBarry Smith PetscFunctionBegin; 10040298fd71SBarry Smith ierr = MatGetSize(A,NULL,&n);CHKERRQ(ierr); 1005785e854fSJed Brown ierr = PetscMalloc1(n,&work);CHKERRQ(ierr); 10060716a85fSBarry Smith ierr = MatGetColumnNorms_SeqDense(a->A,type,work);CHKERRQ(ierr); 10070716a85fSBarry Smith if (type == NORM_2) { 10080716a85fSBarry Smith for (i=0; i<n; i++) work[i] *= work[i]; 10090716a85fSBarry Smith } 10100716a85fSBarry Smith if (type == NORM_INFINITY) { 1011b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_MAX,A->hdr.comm);CHKERRQ(ierr); 10120716a85fSBarry Smith } else { 1013b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_SUM,A->hdr.comm);CHKERRQ(ierr); 10140716a85fSBarry Smith } 10150716a85fSBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 10160716a85fSBarry Smith if (type == NORM_2) { 10178f1a2a5eSBarry Smith for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]); 10180716a85fSBarry Smith } 10190716a85fSBarry Smith PetscFunctionReturn(0); 10200716a85fSBarry Smith } 10210716a85fSBarry Smith 102273a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx) 102373a71a0fSBarry Smith { 102473a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense*)x->data; 102573a71a0fSBarry Smith PetscErrorCode ierr; 102673a71a0fSBarry Smith PetscScalar *a; 102773a71a0fSBarry Smith PetscInt m,n,i; 102873a71a0fSBarry Smith 102973a71a0fSBarry Smith PetscFunctionBegin; 103073a71a0fSBarry Smith ierr = MatGetSize(d->A,&m,&n);CHKERRQ(ierr); 10318c778c55SBarry Smith ierr = MatDenseGetArray(d->A,&a);CHKERRQ(ierr); 103273a71a0fSBarry Smith for (i=0; i<m*n; i++) { 103373a71a0fSBarry Smith ierr = PetscRandomGetValue(rctx,a+i);CHKERRQ(ierr); 103473a71a0fSBarry Smith } 10358c778c55SBarry Smith ierr = MatDenseRestoreArray(d->A,&a);CHKERRQ(ierr); 103673a71a0fSBarry Smith PetscFunctionReturn(0); 103773a71a0fSBarry Smith } 103873a71a0fSBarry Smith 103952c5f739Sprj- PETSC_INTERN PetscErrorCode MatMatMultNumeric_MPIDense(Mat A,Mat,Mat); 1040fd4e9aacSBarry Smith 10413b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool *missing,PetscInt *d) 10423b49f96aSBarry Smith { 10433b49f96aSBarry Smith PetscFunctionBegin; 10443b49f96aSBarry Smith *missing = PETSC_FALSE; 10453b49f96aSBarry Smith PetscFunctionReturn(0); 10463b49f96aSBarry Smith } 10473b49f96aSBarry Smith 10484222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 1049cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 1050cc48ffa7SToby Isaac 10518965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 105209dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense, 105309dc0095SBarry Smith MatGetRow_MPIDense, 105409dc0095SBarry Smith MatRestoreRow_MPIDense, 105509dc0095SBarry Smith MatMult_MPIDense, 105697304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 10577c922b88SBarry Smith MatMultTranspose_MPIDense, 10587c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 10598965ea79SLois Curfman McInnes 0, 106009dc0095SBarry Smith 0, 106109dc0095SBarry Smith 0, 106297304618SKris Buschelman /* 10*/ 0, 106309dc0095SBarry Smith 0, 106409dc0095SBarry Smith 0, 106509dc0095SBarry Smith 0, 106609dc0095SBarry Smith MatTranspose_MPIDense, 106797304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 10686e4ee0c6SHong Zhang MatEqual_MPIDense, 106909dc0095SBarry Smith MatGetDiagonal_MPIDense, 10705b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 107109dc0095SBarry Smith MatNorm_MPIDense, 107297304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 107309dc0095SBarry Smith MatAssemblyEnd_MPIDense, 107409dc0095SBarry Smith MatSetOption_MPIDense, 107509dc0095SBarry Smith MatZeroEntries_MPIDense, 1076d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1077919b68f7SBarry Smith 0, 107801b82886SBarry Smith 0, 107901b82886SBarry Smith 0, 108001b82886SBarry Smith 0, 10814994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1082273d9f13SBarry Smith 0, 108309dc0095SBarry Smith 0, 1084c56a70eeSBarry Smith MatGetDiagonalBlock_MPIDense, 10858c778c55SBarry Smith 0, 1086d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 108709dc0095SBarry Smith 0, 108809dc0095SBarry Smith 0, 108909dc0095SBarry Smith 0, 109009dc0095SBarry Smith 0, 1091d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 10927dae84e0SHong Zhang MatCreateSubMatrices_MPIDense, 109309dc0095SBarry Smith 0, 109409dc0095SBarry Smith MatGetValues_MPIDense, 109509dc0095SBarry Smith 0, 1096d519adbfSMatthew Knepley /* 44*/ 0, 109709dc0095SBarry Smith MatScale_MPIDense, 10987d68702bSBarry Smith MatShift_Basic, 109909dc0095SBarry Smith 0, 110009dc0095SBarry Smith 0, 110173a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 110209dc0095SBarry Smith 0, 110309dc0095SBarry Smith 0, 110409dc0095SBarry Smith 0, 110509dc0095SBarry Smith 0, 1106d519adbfSMatthew Knepley /* 54*/ 0, 110709dc0095SBarry Smith 0, 110809dc0095SBarry Smith 0, 110909dc0095SBarry Smith 0, 111009dc0095SBarry Smith 0, 11117dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPIDense, 1112b9b97703SBarry Smith MatDestroy_MPIDense, 1113b9b97703SBarry Smith MatView_MPIDense, 1114357abbc8SBarry Smith 0, 111597304618SKris Buschelman 0, 1116d519adbfSMatthew Knepley /* 64*/ 0, 111797304618SKris Buschelman 0, 111897304618SKris Buschelman 0, 111997304618SKris Buschelman 0, 112097304618SKris Buschelman 0, 1121d519adbfSMatthew Knepley /* 69*/ 0, 112297304618SKris Buschelman 0, 112397304618SKris Buschelman 0, 112497304618SKris Buschelman 0, 112597304618SKris Buschelman 0, 1126d519adbfSMatthew Knepley /* 74*/ 0, 112797304618SKris Buschelman 0, 112897304618SKris Buschelman 0, 112997304618SKris Buschelman 0, 113097304618SKris Buschelman 0, 1131d519adbfSMatthew Knepley /* 79*/ 0, 113297304618SKris Buschelman 0, 113397304618SKris Buschelman 0, 113497304618SKris Buschelman 0, 11355bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1136865e5f61SKris Buschelman 0, 1137865e5f61SKris Buschelman 0, 1138865e5f61SKris Buschelman 0, 1139865e5f61SKris Buschelman 0, 1140865e5f61SKris Buschelman 0, 11419775878aSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 11424222ddf1SHong Zhang /* 89*/ 0, 11434222ddf1SHong Zhang 0, 11449775878aSHong Zhang #else 11459775878aSHong Zhang /* 89*/ 0, 1146865e5f61SKris Buschelman 0, 11479775878aSHong Zhang #endif 1148fd4e9aacSBarry Smith MatMatMultNumeric_MPIDense, 11492fbe02b9SBarry Smith 0, 1150ba337c44SJed Brown 0, 1151d519adbfSMatthew Knepley /* 94*/ 0, 11524222ddf1SHong Zhang 0, 11534222ddf1SHong Zhang 0, 1154cc48ffa7SToby Isaac MatMatTransposeMultNumeric_MPIDense_MPIDense, 1155ba337c44SJed Brown 0, 11564222ddf1SHong Zhang /* 99*/ MatProductSetFromOptions_MPIDense, 1157ba337c44SJed Brown 0, 1158ba337c44SJed Brown 0, 1159ba337c44SJed Brown MatConjugate_MPIDense, 1160ba337c44SJed Brown 0, 1161ba337c44SJed Brown /*104*/ 0, 1162ba337c44SJed Brown MatRealPart_MPIDense, 1163ba337c44SJed Brown MatImaginaryPart_MPIDense, 116486d161a7SShri Abhyankar 0, 116586d161a7SShri Abhyankar 0, 116686d161a7SShri Abhyankar /*109*/ 0, 116786d161a7SShri Abhyankar 0, 116886d161a7SShri Abhyankar 0, 116949a6ff4bSBarry Smith MatGetColumnVector_MPIDense, 11703b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 117186d161a7SShri Abhyankar /*114*/ 0, 117286d161a7SShri Abhyankar 0, 117386d161a7SShri Abhyankar 0, 117486d161a7SShri Abhyankar 0, 117586d161a7SShri Abhyankar 0, 117686d161a7SShri Abhyankar /*119*/ 0, 117786d161a7SShri Abhyankar 0, 117886d161a7SShri Abhyankar 0, 11790716a85fSBarry Smith 0, 11800716a85fSBarry Smith 0, 11810716a85fSBarry Smith /*124*/ 0, 11823964eb88SJed Brown MatGetColumnNorms_MPIDense, 11833964eb88SJed Brown 0, 11843964eb88SJed Brown 0, 11853964eb88SJed Brown 0, 11863964eb88SJed Brown /*129*/ 0, 11874222ddf1SHong Zhang 0, 11884222ddf1SHong Zhang 0, 1189cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 11903964eb88SJed Brown 0, 11913964eb88SJed Brown /*134*/ 0, 11923964eb88SJed Brown 0, 11933964eb88SJed Brown 0, 11943964eb88SJed Brown 0, 11953964eb88SJed Brown 0, 11963964eb88SJed Brown /*139*/ 0, 1197f9426fe0SMark Adams 0, 119894e2cb23SJakub Kruzik 0, 119994e2cb23SJakub Kruzik 0, 120094e2cb23SJakub Kruzik 0, 12014222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIDense, 12024222ddf1SHong Zhang /*145*/ 0, 12034222ddf1SHong Zhang 0, 12044222ddf1SHong Zhang 0 1205ba337c44SJed Brown }; 12068965ea79SLois Curfman McInnes 12077087cfbeSBarry Smith PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1208a23d5eceSKris Buschelman { 1209a23d5eceSKris Buschelman Mat_MPIDense *a; 1210dfbe8321SBarry Smith PetscErrorCode ierr; 1211a23d5eceSKris Buschelman 1212a23d5eceSKris Buschelman PetscFunctionBegin; 1213430ada49SBarry Smith if (mat->preallocated) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Matrix has already been preallocated"); 1214a23d5eceSKris Buschelman mat->preallocated = PETSC_TRUE; 1215a23d5eceSKris Buschelman /* Note: For now, when data is specified above, this assumes the user correctly 1216a23d5eceSKris Buschelman allocates the local dense storage space. We should add error checking. */ 1217a23d5eceSKris Buschelman 1218a23d5eceSKris Buschelman a = (Mat_MPIDense*)mat->data; 121934ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr); 122034ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr); 122134ef9618SShri Abhyankar a->nvec = mat->cmap->n; 122234ef9618SShri Abhyankar 1223f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr); 1224d0f46423SBarry Smith ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr); 12255c5985e7SKris Buschelman ierr = MatSetType(a->A,MATSEQDENSE);CHKERRQ(ierr); 12265c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr); 12273bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 1228a23d5eceSKris Buschelman PetscFunctionReturn(0); 1229a23d5eceSKris Buschelman } 1230a23d5eceSKris Buschelman 123165b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1232cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 12338baccfbdSHong Zhang { 12348ea901baSHong Zhang Mat mat_elemental; 12358ea901baSHong Zhang PetscErrorCode ierr; 123632d7a744SHong Zhang PetscScalar *v; 123732d7a744SHong Zhang PetscInt m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols; 12388ea901baSHong Zhang 12398baccfbdSHong Zhang PetscFunctionBegin; 1240378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1241378336b6SHong Zhang mat_elemental = *newmat; 1242378336b6SHong Zhang ierr = MatZeroEntries(*newmat);CHKERRQ(ierr); 1243378336b6SHong Zhang } else { 1244378336b6SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr); 1245378336b6SHong Zhang ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 1246378336b6SHong Zhang ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr); 1247378336b6SHong Zhang ierr = MatSetUp(mat_elemental);CHKERRQ(ierr); 124832d7a744SHong Zhang ierr = MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 1249378336b6SHong Zhang } 1250378336b6SHong Zhang 125132d7a744SHong Zhang ierr = PetscMalloc2(m,&rows,N,&cols);CHKERRQ(ierr); 125232d7a744SHong Zhang for (i=0; i<N; i++) cols[i] = i; 125332d7a744SHong Zhang for (i=0; i<m; i++) rows[i] = rstart + i; 12548ea901baSHong Zhang 12558ea901baSHong Zhang /* PETSc-Elemental interaface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 125632d7a744SHong Zhang ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr); 125732d7a744SHong Zhang ierr = MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES);CHKERRQ(ierr); 12588ea901baSHong Zhang ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 12598ea901baSHong Zhang ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 126032d7a744SHong Zhang ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr); 126132d7a744SHong Zhang ierr = PetscFree2(rows,cols);CHKERRQ(ierr); 12628ea901baSHong Zhang 1263511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 126428be2f97SBarry Smith ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr); 12658ea901baSHong Zhang } else { 12668ea901baSHong Zhang *newmat = mat_elemental; 12678ea901baSHong Zhang } 12688baccfbdSHong Zhang PetscFunctionReturn(0); 12698baccfbdSHong Zhang } 127065b80a83SHong Zhang #endif 12718baccfbdSHong Zhang 1272af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A,PetscInt col,PetscScalar **vals) 127386aefd0dSHong Zhang { 127486aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 127586aefd0dSHong Zhang PetscErrorCode ierr; 127686aefd0dSHong Zhang 127786aefd0dSHong Zhang PetscFunctionBegin; 127886aefd0dSHong Zhang ierr = MatDenseGetColumn(mat->A,col,vals);CHKERRQ(ierr); 127986aefd0dSHong Zhang PetscFunctionReturn(0); 128086aefd0dSHong Zhang } 128186aefd0dSHong Zhang 1282af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A,PetscScalar **vals) 128386aefd0dSHong Zhang { 128486aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 128586aefd0dSHong Zhang PetscErrorCode ierr; 128686aefd0dSHong Zhang 128786aefd0dSHong Zhang PetscFunctionBegin; 128886aefd0dSHong Zhang ierr = MatDenseRestoreColumn(mat->A,vals);CHKERRQ(ierr); 128986aefd0dSHong Zhang PetscFunctionReturn(0); 129086aefd0dSHong Zhang } 129186aefd0dSHong Zhang 129294e2cb23SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 129394e2cb23SJakub Kruzik { 129494e2cb23SJakub Kruzik PetscErrorCode ierr; 129594e2cb23SJakub Kruzik Mat_MPIDense *mat; 129694e2cb23SJakub Kruzik PetscInt m,nloc,N; 129794e2cb23SJakub Kruzik 129894e2cb23SJakub Kruzik PetscFunctionBegin; 129994e2cb23SJakub Kruzik ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 130094e2cb23SJakub Kruzik ierr = MatGetLocalSize(inmat,NULL,&nloc);CHKERRQ(ierr); 130194e2cb23SJakub Kruzik if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 130294e2cb23SJakub Kruzik PetscInt sum; 130394e2cb23SJakub Kruzik 130494e2cb23SJakub Kruzik if (n == PETSC_DECIDE) { 130594e2cb23SJakub Kruzik ierr = PetscSplitOwnership(comm,&n,&N);CHKERRQ(ierr); 130694e2cb23SJakub Kruzik } 130794e2cb23SJakub Kruzik /* Check sum(n) = N */ 130894e2cb23SJakub Kruzik ierr = MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 130994e2cb23SJakub Kruzik if (sum != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns %D != global columns %D",sum,N); 131094e2cb23SJakub Kruzik 131194e2cb23SJakub Kruzik ierr = MatCreateDense(comm,m,n,PETSC_DETERMINE,N,NULL,outmat);CHKERRQ(ierr); 131294e2cb23SJakub Kruzik } 131394e2cb23SJakub Kruzik 131494e2cb23SJakub Kruzik /* numeric phase */ 131594e2cb23SJakub Kruzik mat = (Mat_MPIDense*)(*outmat)->data; 131694e2cb23SJakub Kruzik ierr = MatCopy(inmat,mat->A,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 131794e2cb23SJakub Kruzik ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 131894e2cb23SJakub Kruzik ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 131994e2cb23SJakub Kruzik PetscFunctionReturn(0); 132094e2cb23SJakub Kruzik } 132194e2cb23SJakub Kruzik 13228cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat) 1323273d9f13SBarry Smith { 1324273d9f13SBarry Smith Mat_MPIDense *a; 1325dfbe8321SBarry Smith PetscErrorCode ierr; 1326273d9f13SBarry Smith 1327273d9f13SBarry Smith PetscFunctionBegin; 1328b00a9115SJed Brown ierr = PetscNewLog(mat,&a);CHKERRQ(ierr); 1329b0a32e0cSBarry Smith mat->data = (void*)a; 1330273d9f13SBarry Smith ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1331273d9f13SBarry Smith 1332273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1333ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&a->rank);CHKERRQ(ierr); 1334ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&a->size);CHKERRQ(ierr); 1335273d9f13SBarry Smith 1336273d9f13SBarry Smith /* build cache for off array entries formed */ 1337273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 13382205254eSKarl Rupp 1339ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash);CHKERRQ(ierr); 1340273d9f13SBarry Smith 1341273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1342273d9f13SBarry Smith a->lvec = 0; 1343273d9f13SBarry Smith a->Mvctx = 0; 1344273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1345273d9f13SBarry Smith 134649a6ff4bSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",MatDenseGetLDA_MPIDense);CHKERRQ(ierr); 1347bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense);CHKERRQ(ierr); 13488572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense);CHKERRQ(ierr); 13498572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",MatDenseGetArrayRead_MPIDense);CHKERRQ(ierr); 13508572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",MatDenseRestoreArrayRead_MPIDense);CHKERRQ(ierr); 1351d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",MatDensePlaceArray_MPIDense);CHKERRQ(ierr); 1352d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",MatDenseResetArray_MPIDense);CHKERRQ(ierr); 13538baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 13548baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental);CHKERRQ(ierr); 13558baccfbdSHong Zhang #endif 1356bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr); 13574222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 13584222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 1359bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 1360bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 136152c5f739Sprj- ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_nest_mpidense_C",MatMatMultSymbolic_Nest_Dense);CHKERRQ(ierr); 136252c5f739Sprj- ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_nest_mpidense_C",MatMatMultNumeric_Nest_Dense);CHKERRQ(ierr); 13638949adfdSHong Zhang 13648949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",MatTransposeMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 13658949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",MatTransposeMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 1366af53bab2SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",MatDenseGetColumn_MPIDense);CHKERRQ(ierr); 1367af53bab2SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_MPIDense);CHKERRQ(ierr); 136838aed534SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr); 1369273d9f13SBarry Smith PetscFunctionReturn(0); 1370273d9f13SBarry Smith } 1371273d9f13SBarry Smith 1372209238afSKris Buschelman /*MC 1373002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1374209238afSKris Buschelman 1375209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 1376209238afSKris Buschelman and MATMPIDENSE otherwise. 1377209238afSKris Buschelman 1378209238afSKris Buschelman Options Database Keys: 1379209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 1380209238afSKris Buschelman 1381209238afSKris Buschelman Level: beginner 1382209238afSKris Buschelman 138301b82886SBarry Smith 138452c5f739Sprj- .seealso: MATSEQDENSE,MATMPIDENSE 1385209238afSKris Buschelman M*/ 1386209238afSKris Buschelman 1387273d9f13SBarry Smith /*@C 1388273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1389273d9f13SBarry Smith 1390*8f490ea3SStefano Zampini Collective 1391273d9f13SBarry Smith 1392273d9f13SBarry Smith Input Parameters: 13931c4f3114SJed Brown . B - the matrix 13940298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL for PETSc 1395273d9f13SBarry Smith to control all matrix memory allocation. 1396273d9f13SBarry Smith 1397273d9f13SBarry Smith Notes: 1398273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 1399273d9f13SBarry Smith storage by columns. 1400273d9f13SBarry Smith 1401273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1402273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 14030298fd71SBarry Smith set data=NULL. 1404273d9f13SBarry Smith 1405273d9f13SBarry Smith Level: intermediate 1406273d9f13SBarry Smith 1407273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 1408273d9f13SBarry Smith @*/ 14091c4f3114SJed Brown PetscErrorCode MatMPIDenseSetPreallocation(Mat B,PetscScalar *data) 1410273d9f13SBarry Smith { 14114ac538c5SBarry Smith PetscErrorCode ierr; 1412273d9f13SBarry Smith 1413273d9f13SBarry Smith PetscFunctionBegin; 14141c4f3114SJed Brown ierr = PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data));CHKERRQ(ierr); 1415273d9f13SBarry Smith PetscFunctionReturn(0); 1416273d9f13SBarry Smith } 1417273d9f13SBarry Smith 1418d3042a70SBarry Smith /*@ 1419d3042a70SBarry Smith MatDensePlaceArray - Allows one to replace the array in a dense array with an 1420d3042a70SBarry Smith array provided by the user. This is useful to avoid copying an array 1421d3042a70SBarry Smith into a matrix 1422d3042a70SBarry Smith 1423d3042a70SBarry Smith Not Collective 1424d3042a70SBarry Smith 1425d3042a70SBarry Smith Input Parameters: 1426d3042a70SBarry Smith + mat - the matrix 1427d3042a70SBarry Smith - array - the array in column major order 1428d3042a70SBarry Smith 1429d3042a70SBarry Smith Notes: 1430d3042a70SBarry Smith You can return to the original array with a call to MatDenseResetArray(). The user is responsible for freeing this array; it will not be 1431d3042a70SBarry Smith freed when the matrix is destroyed. 1432d3042a70SBarry Smith 1433d3042a70SBarry Smith Level: developer 1434d3042a70SBarry Smith 1435d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDenseResetArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 1436d3042a70SBarry Smith 1437d3042a70SBarry Smith @*/ 1438d3042a70SBarry Smith PetscErrorCode MatDensePlaceArray(Mat mat,const PetscScalar array[]) 1439d3042a70SBarry Smith { 1440d3042a70SBarry Smith PetscErrorCode ierr; 1441d3042a70SBarry Smith PetscFunctionBegin; 1442d3042a70SBarry Smith ierr = PetscUseMethod(mat,"MatDensePlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 1443d3042a70SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 1444d3042a70SBarry Smith PetscFunctionReturn(0); 1445d3042a70SBarry Smith } 1446d3042a70SBarry Smith 1447d3042a70SBarry Smith /*@ 1448d3042a70SBarry Smith MatDenseResetArray - Resets the matrix array to that it previously had before the call to MatDensePlaceArray() 1449d3042a70SBarry Smith 1450d3042a70SBarry Smith Not Collective 1451d3042a70SBarry Smith 1452d3042a70SBarry Smith Input Parameters: 1453d3042a70SBarry Smith . mat - the matrix 1454d3042a70SBarry Smith 1455d3042a70SBarry Smith Notes: 1456d3042a70SBarry Smith You can only call this after a call to MatDensePlaceArray() 1457d3042a70SBarry Smith 1458d3042a70SBarry Smith Level: developer 1459d3042a70SBarry Smith 1460d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDensePlaceArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 1461d3042a70SBarry Smith 1462d3042a70SBarry Smith @*/ 1463d3042a70SBarry Smith PetscErrorCode MatDenseResetArray(Mat mat) 1464d3042a70SBarry Smith { 1465d3042a70SBarry Smith PetscErrorCode ierr; 1466d3042a70SBarry Smith PetscFunctionBegin; 1467d3042a70SBarry Smith ierr = PetscUseMethod(mat,"MatDenseResetArray_C",(Mat),(mat));CHKERRQ(ierr); 1468d3042a70SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 1469d3042a70SBarry Smith PetscFunctionReturn(0); 1470d3042a70SBarry Smith } 1471d3042a70SBarry Smith 14728965ea79SLois Curfman McInnes /*@C 147369b1f4b7SBarry Smith MatCreateDense - Creates a parallel matrix in dense format. 14748965ea79SLois Curfman McInnes 1475d083f849SBarry Smith Collective 1476db81eaa0SLois Curfman McInnes 14778965ea79SLois Curfman McInnes Input Parameters: 1478db81eaa0SLois Curfman McInnes + comm - MPI communicator 14798965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1480db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 14818965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 1482db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 14836cfe35ddSJose E. Roman - data - optional location of matrix data. Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc 1484dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 14858965ea79SLois Curfman McInnes 14868965ea79SLois Curfman McInnes Output Parameter: 1487477f1c0bSLois Curfman McInnes . A - the matrix 14888965ea79SLois Curfman McInnes 1489b259b22eSLois Curfman McInnes Notes: 149039ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 149139ddd567SLois Curfman McInnes storage by columns. 14928965ea79SLois Curfman McInnes 149318f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 149418f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 14956cfe35ddSJose E. Roman set data=NULL (PETSC_NULL_SCALAR for Fortran users). 149618f449edSLois Curfman McInnes 14978965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 14988965ea79SLois Curfman McInnes (possibly both). 14998965ea79SLois Curfman McInnes 1500027ccd11SLois Curfman McInnes Level: intermediate 1501027ccd11SLois Curfman McInnes 150239ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 15038965ea79SLois Curfman McInnes @*/ 150469b1f4b7SBarry Smith PetscErrorCode MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 15058965ea79SLois Curfman McInnes { 15066849ba73SBarry Smith PetscErrorCode ierr; 150713f74950SBarry Smith PetscMPIInt size; 15088965ea79SLois Curfman McInnes 15093a40ed3dSBarry Smith PetscFunctionBegin; 1510f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 1511f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 1512273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1513273d9f13SBarry Smith if (size > 1) { 1514*8f490ea3SStefano Zampini PetscBool havedata = (PetscBool)!!data; 1515*8f490ea3SStefano Zampini 1516273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr); 1517273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr); 1518*8f490ea3SStefano Zampini ierr = MPIU_Allreduce(MPI_IN_PLACE,&havedata,1,MPIU_BOOL,MPI_LOR,comm);CHKERRQ(ierr); 1519*8f490ea3SStefano Zampini if (havedata) { /* user provided data array, so no need to assemble */ 15206cfe35ddSJose E. Roman ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr); 15216cfe35ddSJose E. Roman (*A)->assembled = PETSC_TRUE; 15226cfe35ddSJose E. Roman } 1523273d9f13SBarry Smith } else { 1524273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 1525273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 15268c469469SLois Curfman McInnes } 15273a40ed3dSBarry Smith PetscFunctionReturn(0); 15288965ea79SLois Curfman McInnes } 15298965ea79SLois Curfman McInnes 15306849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 15318965ea79SLois Curfman McInnes { 15328965ea79SLois Curfman McInnes Mat mat; 15333501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 1534dfbe8321SBarry Smith PetscErrorCode ierr; 15358965ea79SLois Curfman McInnes 15363a40ed3dSBarry Smith PetscFunctionBegin; 15378965ea79SLois Curfman McInnes *newmat = 0; 1538ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&mat);CHKERRQ(ierr); 1539d0f46423SBarry Smith ierr = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 15407adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr); 1541834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 15425aa7edbeSHong Zhang 1543d5f3da31SBarry Smith mat->factortype = A->factortype; 1544c456f294SBarry Smith mat->assembled = PETSC_TRUE; 1545273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 15468965ea79SLois Curfman McInnes 15478965ea79SLois Curfman McInnes a->size = oldmat->size; 15488965ea79SLois Curfman McInnes a->rank = oldmat->rank; 1549e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 1550b9b97703SBarry Smith a->nvec = oldmat->nvec; 15513782ba37SSatish Balay a->donotstash = oldmat->donotstash; 1552e04c1aa4SHong Zhang 15531e1e43feSBarry Smith ierr = PetscLayoutReference(A->rmap,&mat->rmap);CHKERRQ(ierr); 15541e1e43feSBarry Smith ierr = PetscLayoutReference(A->cmap,&mat->cmap);CHKERRQ(ierr); 15558965ea79SLois Curfman McInnes 1556329f5518SBarry Smith ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 15575609ef8eSBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 15583bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 155901b82886SBarry Smith 15608965ea79SLois Curfman McInnes *newmat = mat; 15613a40ed3dSBarry Smith PetscFunctionReturn(0); 15628965ea79SLois Curfman McInnes } 15638965ea79SLois Curfman McInnes 1564eb91f321SVaclav Hapla PetscErrorCode MatLoad_MPIDense(Mat newMat, PetscViewer viewer) 1565eb91f321SVaclav Hapla { 1566eb91f321SVaclav Hapla PetscErrorCode ierr; 156787d5ce66SSatish Balay PetscBool isbinary; 156887d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 156987d5ce66SSatish Balay PetscBool ishdf5; 157087d5ce66SSatish Balay #endif 1571eb91f321SVaclav Hapla 1572eb91f321SVaclav Hapla PetscFunctionBegin; 1573eb91f321SVaclav Hapla PetscValidHeaderSpecific(newMat,MAT_CLASSID,1); 1574eb91f321SVaclav Hapla PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 1575eb91f321SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 1576eb91f321SVaclav Hapla ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 1577eb91f321SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 157887d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 1579eb91f321SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5, &ishdf5);CHKERRQ(ierr); 158087d5ce66SSatish Balay #endif 1581eb91f321SVaclav Hapla if (isbinary) { 15828491ab44SLisandro Dalcin ierr = MatLoad_Dense_Binary(newMat,viewer);CHKERRQ(ierr); 1583eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 158487d5ce66SSatish Balay } else if (ishdf5) { 1585eb91f321SVaclav Hapla ierr = MatLoad_Dense_HDF5(newMat,viewer);CHKERRQ(ierr); 1586eb91f321SVaclav Hapla #endif 158787d5ce66SSatish Balay } else SETERRQ2(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newMat)->type_name); 1588eb91f321SVaclav Hapla PetscFunctionReturn(0); 1589eb91f321SVaclav Hapla } 1590eb91f321SVaclav Hapla 1591ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool *flag) 15926e4ee0c6SHong Zhang { 15936e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 15946e4ee0c6SHong Zhang Mat a,b; 1595ace3abfcSBarry Smith PetscBool flg; 15966e4ee0c6SHong Zhang PetscErrorCode ierr; 159790ace30eSBarry Smith 15986e4ee0c6SHong Zhang PetscFunctionBegin; 15996e4ee0c6SHong Zhang a = matA->A; 16006e4ee0c6SHong Zhang b = matB->A; 16016e4ee0c6SHong Zhang ierr = MatEqual(a,b,&flg);CHKERRQ(ierr); 1602b2566f29SBarry Smith ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 16036e4ee0c6SHong Zhang PetscFunctionReturn(0); 16046e4ee0c6SHong Zhang } 160590ace30eSBarry Smith 1606baa3c1c6SHong Zhang PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(Mat A) 1607baa3c1c6SHong Zhang { 1608baa3c1c6SHong Zhang PetscErrorCode ierr; 1609baa3c1c6SHong Zhang Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1610baa3c1c6SHong Zhang Mat_TransMatMultDense *atb = a->atbdense; 1611baa3c1c6SHong Zhang 1612baa3c1c6SHong Zhang PetscFunctionBegin; 1613c5ef1628SHong Zhang ierr = PetscFree3(atb->sendbuf,atb->atbarray,atb->recvcounts);CHKERRQ(ierr); 1614baa3c1c6SHong Zhang ierr = (atb->destroy)(A);CHKERRQ(ierr); 1615baa3c1c6SHong Zhang ierr = PetscFree(atb);CHKERRQ(ierr); 1616baa3c1c6SHong Zhang PetscFunctionReturn(0); 1617baa3c1c6SHong Zhang } 1618baa3c1c6SHong Zhang 1619cc48ffa7SToby Isaac PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(Mat A) 1620cc48ffa7SToby Isaac { 1621cc48ffa7SToby Isaac PetscErrorCode ierr; 1622cc48ffa7SToby Isaac Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1623cc48ffa7SToby Isaac Mat_MatTransMultDense *abt = a->abtdense; 1624cc48ffa7SToby Isaac 1625cc48ffa7SToby Isaac PetscFunctionBegin; 1626cc48ffa7SToby Isaac ierr = PetscFree2(abt->buf[0],abt->buf[1]);CHKERRQ(ierr); 1627faa55883SToby Isaac ierr = PetscFree2(abt->recvcounts,abt->recvdispls);CHKERRQ(ierr); 1628cc48ffa7SToby Isaac ierr = (abt->destroy)(A);CHKERRQ(ierr); 1629cc48ffa7SToby Isaac ierr = PetscFree(abt);CHKERRQ(ierr); 1630cc48ffa7SToby Isaac PetscFunctionReturn(0); 1631cc48ffa7SToby Isaac } 1632cc48ffa7SToby Isaac 1633cb20be35SHong Zhang PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 1634cb20be35SHong Zhang { 1635baa3c1c6SHong Zhang Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 1636660d5466SHong Zhang Mat_SeqDense *aseq=(Mat_SeqDense*)(a->A)->data, *bseq=(Mat_SeqDense*)(b->A)->data; 1637baa3c1c6SHong Zhang Mat_TransMatMultDense *atb = c->atbdense; 1638cb20be35SHong Zhang PetscErrorCode ierr; 1639cb20be35SHong Zhang MPI_Comm comm; 1640d5017740SHong Zhang PetscMPIInt rank,size,*recvcounts=atb->recvcounts; 1641c5ef1628SHong Zhang PetscScalar *carray,*atbarray=atb->atbarray,*sendbuf=atb->sendbuf; 1642d5017740SHong Zhang PetscInt i,cN=C->cmap->N,cM=C->rmap->N,proc,k,j; 1643660d5466SHong Zhang PetscScalar _DOne=1.0,_DZero=0.0; 1644adc7a786SHong Zhang PetscBLASInt am,an,bn,aN; 1645e68c0b26SHong Zhang const PetscInt *ranges; 1646cb20be35SHong Zhang 1647cb20be35SHong Zhang PetscFunctionBegin; 1648cb20be35SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 1649cb20be35SHong Zhang ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 1650cb20be35SHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1651e68c0b26SHong Zhang 1652c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 1653660d5466SHong Zhang ierr = PetscBLASIntCast(a->A->cmap->n,&an);CHKERRQ(ierr); 1654660d5466SHong Zhang ierr = PetscBLASIntCast(b->A->cmap->n,&bn);CHKERRQ(ierr); 1655660d5466SHong Zhang ierr = PetscBLASIntCast(a->A->rmap->n,&am);CHKERRQ(ierr); 1656adc7a786SHong Zhang ierr = PetscBLASIntCast(A->cmap->N,&aN);CHKERRQ(ierr); 1657adc7a786SHong Zhang PetscStackCallBLAS("BLASgemm",BLASgemm_("T","N",&an,&bn,&am,&_DOne,aseq->v,&aseq->lda,bseq->v,&bseq->lda,&_DZero,atbarray,&aN)); 1658cb20be35SHong Zhang 1659cb20be35SHong Zhang ierr = MatGetOwnershipRanges(C,&ranges);CHKERRQ(ierr); 1660c5ef1628SHong Zhang for (i=0; i<size; i++) recvcounts[i] = (ranges[i+1] - ranges[i])*cN; 1661cb20be35SHong Zhang 1662660d5466SHong Zhang /* arrange atbarray into sendbuf */ 1663cb20be35SHong Zhang k = 0; 1664cb20be35SHong Zhang for (proc=0; proc<size; proc++) { 1665baa3c1c6SHong Zhang for (j=0; j<cN; j++) { 1666c5ef1628SHong Zhang for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*cM]; 1667cb20be35SHong Zhang } 1668cb20be35SHong Zhang } 1669c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 1670660d5466SHong Zhang ierr = MatDenseGetArray(c->A,&carray);CHKERRQ(ierr); 16713462b7efSHong Zhang ierr = MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm);CHKERRQ(ierr); 1672660d5466SHong Zhang ierr = MatDenseRestoreArray(c->A,&carray);CHKERRQ(ierr); 1673cb20be35SHong Zhang PetscFunctionReturn(0); 1674cb20be35SHong Zhang } 1675cb20be35SHong Zhang 16764222ddf1SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 1677cb20be35SHong Zhang { 1678cb20be35SHong Zhang PetscErrorCode ierr; 1679cb20be35SHong Zhang MPI_Comm comm; 1680baa3c1c6SHong Zhang PetscMPIInt size; 1681660d5466SHong Zhang PetscInt cm=A->cmap->n,cM,cN=B->cmap->N; 1682baa3c1c6SHong Zhang Mat_MPIDense *c; 1683baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 1684cb20be35SHong Zhang 1685cb20be35SHong Zhang PetscFunctionBegin; 1686baa3c1c6SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 1687cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 1688cb20be35SHong Zhang SETERRQ4(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 1689cb20be35SHong Zhang } 1690cb20be35SHong Zhang 16914222ddf1SHong Zhang /* create matrix product C */ 16924222ddf1SHong Zhang ierr = MatSetSizes(C,cm,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 16934222ddf1SHong Zhang ierr = MatSetType(C,MATMPIDENSE);CHKERRQ(ierr); 169418992e5dSStefano Zampini ierr = MatSetUp(C);CHKERRQ(ierr); 16954222ddf1SHong Zhang ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16964222ddf1SHong Zhang ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1697baa3c1c6SHong Zhang 16984222ddf1SHong Zhang /* create data structure for reuse C */ 1699baa3c1c6SHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1700baa3c1c6SHong Zhang ierr = PetscNew(&atb);CHKERRQ(ierr); 17014222ddf1SHong Zhang cM = C->rmap->N; 1702c5ef1628SHong Zhang ierr = PetscMalloc3(cM*cN,&atb->sendbuf,cM*cN,&atb->atbarray,size,&atb->recvcounts);CHKERRQ(ierr); 1703baa3c1c6SHong Zhang 17044222ddf1SHong Zhang c = (Mat_MPIDense*)C->data; 1705baa3c1c6SHong Zhang c->atbdense = atb; 17064222ddf1SHong Zhang atb->destroy = C->ops->destroy; 17074222ddf1SHong Zhang C->ops->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 1708cb20be35SHong Zhang PetscFunctionReturn(0); 1709cb20be35SHong Zhang } 1710cb20be35SHong Zhang 17114222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 1712cb20be35SHong Zhang { 1713cb20be35SHong Zhang PetscErrorCode ierr; 1714cc48ffa7SToby Isaac MPI_Comm comm; 1715cc48ffa7SToby Isaac PetscMPIInt i, size; 1716cc48ffa7SToby Isaac PetscInt maxRows, bufsiz; 1717cc48ffa7SToby Isaac Mat_MPIDense *c; 1718cc48ffa7SToby Isaac PetscMPIInt tag; 17194222ddf1SHong Zhang PetscInt alg; 1720cc48ffa7SToby Isaac Mat_MatTransMultDense *abt; 17214222ddf1SHong Zhang Mat_Product *product = C->product; 17224222ddf1SHong Zhang PetscBool flg; 1723cc48ffa7SToby Isaac 1724cc48ffa7SToby Isaac PetscFunctionBegin; 17254222ddf1SHong Zhang /* check local size of A and B */ 17264222ddf1SHong Zhang if (A->cmap->n != B->cmap->n) { 17274222ddf1SHong Zhang SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local column dimensions are incompatible, A (%D) != B (%D)",A->cmap->n,B->cmap->n); 1728cc48ffa7SToby Isaac } 1729cc48ffa7SToby Isaac 17304222ddf1SHong Zhang ierr = PetscStrcmp(product->alg,"allgatherv",&flg);CHKERRQ(ierr); 17314222ddf1SHong Zhang if (flg) { 17324222ddf1SHong Zhang alg = 0; 17334222ddf1SHong Zhang } else alg = 1; 1734cc48ffa7SToby Isaac 17354222ddf1SHong Zhang /* setup matrix product C */ 17364222ddf1SHong Zhang ierr = MatSetSizes(C,A->rmap->n,B->rmap->n,A->rmap->N,B->rmap->N);CHKERRQ(ierr); 17374222ddf1SHong Zhang ierr = MatSetType(C,MATMPIDENSE);CHKERRQ(ierr); 173818992e5dSStefano Zampini ierr = MatSetUp(C);CHKERRQ(ierr); 17394222ddf1SHong Zhang ierr = PetscObjectGetNewTag((PetscObject)C, &tag);CHKERRQ(ierr); 17404222ddf1SHong Zhang ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 17414222ddf1SHong Zhang ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 17424222ddf1SHong Zhang 17434222ddf1SHong Zhang /* create data structure for reuse C */ 17444222ddf1SHong Zhang ierr = PetscObjectGetComm((PetscObject)C,&comm);CHKERRQ(ierr); 1745cc48ffa7SToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1746cc48ffa7SToby Isaac ierr = PetscNew(&abt);CHKERRQ(ierr); 1747cc48ffa7SToby Isaac abt->tag = tag; 1748faa55883SToby Isaac abt->alg = alg; 1749faa55883SToby Isaac switch (alg) { 17504222ddf1SHong Zhang case 1: /* alg: "cyclic" */ 1751cc48ffa7SToby Isaac for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i])); 1752cc48ffa7SToby Isaac bufsiz = A->cmap->N * maxRows; 1753cc48ffa7SToby Isaac ierr = PetscMalloc2(bufsiz,&(abt->buf[0]),bufsiz,&(abt->buf[1]));CHKERRQ(ierr); 1754faa55883SToby Isaac break; 17554222ddf1SHong Zhang default: /* alg: "allgatherv" */ 1756faa55883SToby Isaac ierr = PetscMalloc2(B->rmap->n * B->cmap->N, &(abt->buf[0]), B->rmap->N * B->cmap->N, &(abt->buf[1]));CHKERRQ(ierr); 1757faa55883SToby Isaac ierr = PetscMalloc2(size,&(abt->recvcounts),size+1,&(abt->recvdispls));CHKERRQ(ierr); 1758faa55883SToby Isaac for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N; 1759faa55883SToby Isaac for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i]; 1760faa55883SToby Isaac break; 1761faa55883SToby Isaac } 1762cc48ffa7SToby Isaac 17634222ddf1SHong Zhang c = (Mat_MPIDense*)C->data; 1764cc48ffa7SToby Isaac c->abtdense = abt; 17654222ddf1SHong Zhang abt->destroy = C->ops->destroy; 17664222ddf1SHong Zhang C->ops->destroy = MatDestroy_MatMatTransMult_MPIDense_MPIDense; 17674222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_MPIDense_MPIDense; 1768cc48ffa7SToby Isaac PetscFunctionReturn(0); 1769cc48ffa7SToby Isaac } 1770cc48ffa7SToby Isaac 1771faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C) 1772cc48ffa7SToby Isaac { 1773cc48ffa7SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 1774cc48ffa7SToby Isaac Mat_SeqDense *aseq=(Mat_SeqDense*)(a->A)->data, *bseq=(Mat_SeqDense*)(b->A)->data; 1775cc48ffa7SToby Isaac Mat_SeqDense *cseq=(Mat_SeqDense*)(c->A)->data; 1776cc48ffa7SToby Isaac Mat_MatTransMultDense *abt = c->abtdense; 1777cc48ffa7SToby Isaac PetscErrorCode ierr; 1778cc48ffa7SToby Isaac MPI_Comm comm; 1779cc48ffa7SToby Isaac PetscMPIInt rank,size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom; 1780ce36caf3SSatish Balay PetscScalar *sendbuf, *recvbuf=0, *carray; 1781cc48ffa7SToby Isaac PetscInt i,cK=A->cmap->N,k,j,bn; 1782cc48ffa7SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 1783cc48ffa7SToby Isaac PetscBLASInt cm, cn, ck; 1784cc48ffa7SToby Isaac MPI_Request reqs[2]; 1785cc48ffa7SToby Isaac const PetscInt *ranges; 1786cc48ffa7SToby Isaac 1787cc48ffa7SToby Isaac PetscFunctionBegin; 1788cc48ffa7SToby Isaac ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 1789cc48ffa7SToby Isaac ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 1790cc48ffa7SToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1791cc48ffa7SToby Isaac 1792cc48ffa7SToby Isaac ierr = MatGetOwnershipRanges(B,&ranges);CHKERRQ(ierr); 1793cc48ffa7SToby Isaac bn = B->rmap->n; 1794cc48ffa7SToby Isaac if (bseq->lda == bn) { 1795cc48ffa7SToby Isaac sendbuf = bseq->v; 1796cc48ffa7SToby Isaac } else { 1797cc48ffa7SToby Isaac sendbuf = abt->buf[0]; 1798cc48ffa7SToby Isaac for (k = 0, i = 0; i < cK; i++) { 1799cc48ffa7SToby Isaac for (j = 0; j < bn; j++, k++) { 1800cc48ffa7SToby Isaac sendbuf[k] = bseq->v[i * bseq->lda + j]; 1801cc48ffa7SToby Isaac } 1802cc48ffa7SToby Isaac } 1803cc48ffa7SToby Isaac } 1804cc48ffa7SToby Isaac if (size > 1) { 1805cc48ffa7SToby Isaac sendto = (rank + size - 1) % size; 1806cc48ffa7SToby Isaac recvfrom = (rank + size + 1) % size; 1807cc48ffa7SToby Isaac } else { 1808cc48ffa7SToby Isaac sendto = recvfrom = 0; 1809cc48ffa7SToby Isaac } 1810cc48ffa7SToby Isaac ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr); 1811cc48ffa7SToby Isaac ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr); 1812cc48ffa7SToby Isaac recvisfrom = rank; 1813cc48ffa7SToby Isaac for (i = 0; i < size; i++) { 1814cc48ffa7SToby Isaac /* we have finished receiving in sending, bufs can be read/modified */ 1815cc48ffa7SToby Isaac PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */ 1816cc48ffa7SToby Isaac PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom]; 1817cc48ffa7SToby Isaac 1818cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 1819cc48ffa7SToby Isaac /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */ 1820cc48ffa7SToby Isaac sendsiz = cK * bn; 1821cc48ffa7SToby Isaac recvsiz = cK * nextbn; 1822cc48ffa7SToby Isaac recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1]; 1823cc48ffa7SToby Isaac ierr = MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0]);CHKERRQ(ierr); 1824cc48ffa7SToby Isaac ierr = MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1]);CHKERRQ(ierr); 1825cc48ffa7SToby Isaac } 1826cc48ffa7SToby Isaac 1827cc48ffa7SToby Isaac /* local aseq * sendbuf^T */ 1828cc48ffa7SToby Isaac ierr = PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn);CHKERRQ(ierr); 1829cc48ffa7SToby Isaac carray = &cseq->v[cseq->lda * ranges[recvisfrom]]; 1830cc48ffa7SToby Isaac PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&cm,&cn,&ck,&_DOne,aseq->v,&aseq->lda,sendbuf,&cn,&_DZero,carray,&cseq->lda)); 1831cc48ffa7SToby Isaac 1832cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 1833cc48ffa7SToby Isaac /* wait for the sends and receives to complete, swap sendbuf and recvbuf */ 1834cc48ffa7SToby Isaac ierr = MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE);CHKERRQ(ierr); 1835cc48ffa7SToby Isaac } 1836cc48ffa7SToby Isaac bn = nextbn; 1837cc48ffa7SToby Isaac recvisfrom = nextrecvisfrom; 1838cc48ffa7SToby Isaac sendbuf = recvbuf; 1839cc48ffa7SToby Isaac } 1840cc48ffa7SToby Isaac PetscFunctionReturn(0); 1841cc48ffa7SToby Isaac } 1842cc48ffa7SToby Isaac 1843faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C) 1844faa55883SToby Isaac { 1845faa55883SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 1846faa55883SToby Isaac Mat_SeqDense *aseq=(Mat_SeqDense*)(a->A)->data, *bseq=(Mat_SeqDense*)(b->A)->data; 1847faa55883SToby Isaac Mat_SeqDense *cseq=(Mat_SeqDense*)(c->A)->data; 1848faa55883SToby Isaac Mat_MatTransMultDense *abt = c->abtdense; 1849faa55883SToby Isaac PetscErrorCode ierr; 1850faa55883SToby Isaac MPI_Comm comm; 1851faa55883SToby Isaac PetscMPIInt rank,size; 1852faa55883SToby Isaac PetscScalar *sendbuf, *recvbuf; 1853faa55883SToby Isaac PetscInt i,cK=A->cmap->N,k,j,bn; 1854faa55883SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 1855faa55883SToby Isaac PetscBLASInt cm, cn, ck; 1856faa55883SToby Isaac 1857faa55883SToby Isaac PetscFunctionBegin; 1858faa55883SToby Isaac ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 1859faa55883SToby Isaac ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 1860faa55883SToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1861faa55883SToby Isaac 1862faa55883SToby Isaac /* copy transpose of B into buf[0] */ 1863faa55883SToby Isaac bn = B->rmap->n; 1864faa55883SToby Isaac sendbuf = abt->buf[0]; 1865faa55883SToby Isaac recvbuf = abt->buf[1]; 1866faa55883SToby Isaac for (k = 0, j = 0; j < bn; j++) { 1867faa55883SToby Isaac for (i = 0; i < cK; i++, k++) { 1868faa55883SToby Isaac sendbuf[k] = bseq->v[i * bseq->lda + j]; 1869faa55883SToby Isaac } 1870faa55883SToby Isaac } 1871faa55883SToby Isaac ierr = MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm);CHKERRQ(ierr); 1872faa55883SToby Isaac ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr); 1873faa55883SToby Isaac ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr); 1874faa55883SToby Isaac ierr = PetscBLASIntCast(c->A->cmap->n,&cn);CHKERRQ(ierr); 1875faa55883SToby Isaac PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&cm,&cn,&ck,&_DOne,aseq->v,&aseq->lda,recvbuf,&ck,&_DZero,cseq->v,&cseq->lda)); 1876faa55883SToby Isaac PetscFunctionReturn(0); 1877faa55883SToby Isaac } 1878faa55883SToby Isaac 1879faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 1880faa55883SToby Isaac { 1881faa55883SToby Isaac Mat_MPIDense *c=(Mat_MPIDense*)C->data; 1882faa55883SToby Isaac Mat_MatTransMultDense *abt = c->abtdense; 1883faa55883SToby Isaac PetscErrorCode ierr; 1884faa55883SToby Isaac 1885faa55883SToby Isaac PetscFunctionBegin; 1886faa55883SToby Isaac switch (abt->alg) { 1887faa55883SToby Isaac case 1: 1888faa55883SToby Isaac ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C);CHKERRQ(ierr); 1889faa55883SToby Isaac break; 1890faa55883SToby Isaac default: 1891faa55883SToby Isaac ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C);CHKERRQ(ierr); 1892faa55883SToby Isaac break; 1893faa55883SToby Isaac } 1894faa55883SToby Isaac PetscFunctionReturn(0); 1895faa55883SToby Isaac } 1896faa55883SToby Isaac 1897320f2790SHong Zhang PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(Mat A) 1898320f2790SHong Zhang { 1899320f2790SHong Zhang PetscErrorCode ierr; 1900320f2790SHong Zhang Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1901320f2790SHong Zhang Mat_MatMultDense *ab = a->abdense; 1902320f2790SHong Zhang 1903320f2790SHong Zhang PetscFunctionBegin; 1904320f2790SHong Zhang ierr = MatDestroy(&ab->Ce);CHKERRQ(ierr); 1905320f2790SHong Zhang ierr = MatDestroy(&ab->Ae);CHKERRQ(ierr); 1906320f2790SHong Zhang ierr = MatDestroy(&ab->Be);CHKERRQ(ierr); 1907320f2790SHong Zhang 1908320f2790SHong Zhang ierr = (ab->destroy)(A);CHKERRQ(ierr); 1909320f2790SHong Zhang ierr = PetscFree(ab);CHKERRQ(ierr); 1910320f2790SHong Zhang PetscFunctionReturn(0); 1911320f2790SHong Zhang } 1912320f2790SHong Zhang 19135242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1914320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 1915320f2790SHong Zhang { 1916320f2790SHong Zhang PetscErrorCode ierr; 1917320f2790SHong Zhang Mat_MPIDense *c=(Mat_MPIDense*)C->data; 1918320f2790SHong Zhang Mat_MatMultDense *ab=c->abdense; 1919320f2790SHong Zhang 1920320f2790SHong Zhang PetscFunctionBegin; 1921de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae);CHKERRQ(ierr); 1922de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be);CHKERRQ(ierr); 19234222ddf1SHong Zhang ierr = MatMatMultNumeric_Elemental(ab->Ae,ab->Be,ab->Ce);CHKERRQ(ierr); 1924de0a22f0SHong Zhang ierr = MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C);CHKERRQ(ierr); 1925320f2790SHong Zhang PetscFunctionReturn(0); 1926320f2790SHong Zhang } 1927320f2790SHong Zhang 19284222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 1929320f2790SHong Zhang { 1930320f2790SHong Zhang PetscErrorCode ierr; 1931320f2790SHong Zhang Mat Ae,Be,Ce; 1932320f2790SHong Zhang Mat_MPIDense *c; 1933320f2790SHong Zhang Mat_MatMultDense *ab; 1934320f2790SHong Zhang 1935320f2790SHong Zhang PetscFunctionBegin; 19364222ddf1SHong Zhang /* check local size of A and B */ 1937320f2790SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) { 1938378336b6SHong Zhang SETERRQ4(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 1939320f2790SHong Zhang } 1940320f2790SHong Zhang 19414222ddf1SHong Zhang /* create elemental matrices Ae and Be */ 19424222ddf1SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A), &Ae);CHKERRQ(ierr); 19434222ddf1SHong Zhang ierr = MatSetSizes(Ae,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 19444222ddf1SHong Zhang ierr = MatSetType(Ae,MATELEMENTAL);CHKERRQ(ierr); 19454222ddf1SHong Zhang ierr = MatSetUp(Ae);CHKERRQ(ierr); 19464222ddf1SHong Zhang ierr = MatSetOption(Ae,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 1947320f2790SHong Zhang 19484222ddf1SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)B), &Be);CHKERRQ(ierr); 19494222ddf1SHong Zhang ierr = MatSetSizes(Be,PETSC_DECIDE,PETSC_DECIDE,B->rmap->N,B->cmap->N);CHKERRQ(ierr); 19504222ddf1SHong Zhang ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr); 19514222ddf1SHong Zhang ierr = MatSetUp(Be);CHKERRQ(ierr); 19524222ddf1SHong Zhang ierr = MatSetOption(Be,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 1953320f2790SHong Zhang 19544222ddf1SHong Zhang /* compute symbolic Ce = Ae*Be */ 19554222ddf1SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)C),&Ce);CHKERRQ(ierr); 19564222ddf1SHong Zhang ierr = MatMatMultSymbolic_Elemental(Ae,Be,fill,Ce);CHKERRQ(ierr); 19574222ddf1SHong Zhang 19584222ddf1SHong Zhang /* setup C */ 19594222ddf1SHong Zhang ierr = MatSetSizes(C,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 19604222ddf1SHong Zhang ierr = MatSetType(C,MATDENSE);CHKERRQ(ierr); 19614222ddf1SHong Zhang ierr = MatSetUp(C);CHKERRQ(ierr); 1962320f2790SHong Zhang 1963320f2790SHong Zhang /* create data structure for reuse Cdense */ 1964320f2790SHong Zhang ierr = PetscNew(&ab);CHKERRQ(ierr); 19654222ddf1SHong Zhang c = (Mat_MPIDense*)C->data; 1966320f2790SHong Zhang c->abdense = ab; 1967320f2790SHong Zhang 1968320f2790SHong Zhang ab->Ae = Ae; 1969320f2790SHong Zhang ab->Be = Be; 1970320f2790SHong Zhang ab->Ce = Ce; 19714222ddf1SHong Zhang ab->destroy = C->ops->destroy; 19724222ddf1SHong Zhang C->ops->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 19734222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 19744222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AB; 1975320f2790SHong Zhang PetscFunctionReturn(0); 1976320f2790SHong Zhang } 19774222ddf1SHong Zhang #endif 19784222ddf1SHong Zhang /* ----------------------------------------------- */ 19794222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 19804222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AB(Mat C) 1981320f2790SHong Zhang { 1982320f2790SHong Zhang PetscFunctionBegin; 19834222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIDense; 19844222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 19854222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AB; 1986320f2790SHong Zhang PetscFunctionReturn(0); 1987320f2790SHong Zhang } 19885242a7b1SHong Zhang #endif 198986aefd0dSHong Zhang 19904222ddf1SHong Zhang static PetscErrorCode MatProductSymbolic_AtB_MPIDense(Mat C) 19914222ddf1SHong Zhang { 19924222ddf1SHong Zhang PetscErrorCode ierr; 19934222ddf1SHong Zhang Mat_Product *product = C->product; 19944222ddf1SHong Zhang 19954222ddf1SHong Zhang PetscFunctionBegin; 19964222ddf1SHong Zhang ierr = MatTransposeMatMultSymbolic_MPIDense_MPIDense(product->A,product->B,product->fill,C);CHKERRQ(ierr); 19974222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AtB; 19984222ddf1SHong Zhang C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIDense_MPIDense; 19994222ddf1SHong Zhang PetscFunctionReturn(0); 20004222ddf1SHong Zhang } 20014222ddf1SHong Zhang 20024222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AtB(Mat C) 20034222ddf1SHong Zhang { 20044222ddf1SHong Zhang Mat_Product *product = C->product; 20054222ddf1SHong Zhang Mat A = product->A,B=product->B; 20064222ddf1SHong Zhang 20074222ddf1SHong Zhang PetscFunctionBegin; 20084222ddf1SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) 20094222ddf1SHong Zhang SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%D, %D) != (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 20104222ddf1SHong Zhang 20114222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AtB_MPIDense; 20124222ddf1SHong Zhang PetscFunctionReturn(0); 20134222ddf1SHong Zhang } 20144222ddf1SHong Zhang 20154222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_ABt(Mat C) 20164222ddf1SHong Zhang { 20174222ddf1SHong Zhang PetscErrorCode ierr; 20184222ddf1SHong Zhang Mat_Product *product = C->product; 20194222ddf1SHong Zhang const char *algTypes[2] = {"allgatherv","cyclic"}; 20204222ddf1SHong Zhang PetscInt alg,nalg = 2; 20214222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 20224222ddf1SHong Zhang 20234222ddf1SHong Zhang PetscFunctionBegin; 20244222ddf1SHong Zhang /* Set default algorithm */ 20254222ddf1SHong Zhang alg = 0; /* default is allgatherv */ 20264222ddf1SHong Zhang ierr = PetscStrcmp(product->alg,"default",&flg);CHKERRQ(ierr); 20274222ddf1SHong Zhang if (flg) { 20284222ddf1SHong Zhang ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr); 20294222ddf1SHong Zhang } 20304222ddf1SHong Zhang 20314222ddf1SHong Zhang /* Get runtime option */ 20324222ddf1SHong Zhang if (product->api_user) { 20334222ddf1SHong Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatTransposeMult","Mat");CHKERRQ(ierr); 20344222ddf1SHong Zhang ierr = PetscOptionsEList("-matmattransmult_mpidense_mpidense_via","Algorithmic approach","MatMatTransposeMult",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr); 20354222ddf1SHong Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 20364222ddf1SHong Zhang } else { 20374222ddf1SHong Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_ABt","Mat");CHKERRQ(ierr); 20384222ddf1SHong Zhang ierr = PetscOptionsEList("-matproduct_abt_mpidense_mpidense_via","Algorithmic approach","MatProduct_ABt",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr); 20394222ddf1SHong Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 20404222ddf1SHong Zhang } 20414222ddf1SHong Zhang if (flg) { 20424222ddf1SHong Zhang ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr); 20434222ddf1SHong Zhang } 20444222ddf1SHong Zhang 20454222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_MPIDense_MPIDense; 20464222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 20474222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_ABt; 20484222ddf1SHong Zhang PetscFunctionReturn(0); 20494222ddf1SHong Zhang } 20504222ddf1SHong Zhang 20514222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense(Mat C) 20524222ddf1SHong Zhang { 20534222ddf1SHong Zhang PetscErrorCode ierr; 20544222ddf1SHong Zhang Mat_Product *product = C->product; 20554222ddf1SHong Zhang 20564222ddf1SHong Zhang PetscFunctionBegin; 20574222ddf1SHong Zhang switch (product->type) { 20584222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 20594222ddf1SHong Zhang case MATPRODUCT_AB: 20604222ddf1SHong Zhang ierr = MatProductSetFromOptions_MPIDense_AB(C);CHKERRQ(ierr); 20614222ddf1SHong Zhang break; 20624222ddf1SHong Zhang #endif 20634222ddf1SHong Zhang case MATPRODUCT_AtB: 20644222ddf1SHong Zhang ierr = MatProductSetFromOptions_MPIDense_AtB(C);CHKERRQ(ierr); 20654222ddf1SHong Zhang break; 20664222ddf1SHong Zhang case MATPRODUCT_ABt: 20674222ddf1SHong Zhang ierr = MatProductSetFromOptions_MPIDense_ABt(C);CHKERRQ(ierr); 20684222ddf1SHong Zhang break; 2069544a5e07SHong Zhang default: SETERRQ1(PetscObjectComm((PetscObject)C),PETSC_ERR_SUP,"MatProduct type %s is not supported for MPIDense and MPIDense matrices",MatProductTypes[product->type]); 20704222ddf1SHong Zhang } 20714222ddf1SHong Zhang PetscFunctionReturn(0); 20724222ddf1SHong Zhang } 2073