xref: /petsc/src/mat/impls/dense/mpi/mpidense.c (revision 8f490ea3794b95f13ee021a5bbd86b59cbd03ea4)
1be1d678aSKris Buschelman 
2ed3cc1f0SBarry Smith /*
3ed3cc1f0SBarry Smith    Basic functions for basic parallel dense matrices.
4ed3cc1f0SBarry Smith */
5ed3cc1f0SBarry Smith 
6c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h>    /*I   "petscmat.h"  I*/
78949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h>
8baa3c1c6SHong Zhang #include <petscblaslapack.h>
98965ea79SLois Curfman McInnes 
10ab92ecdeSBarry Smith /*@
11ab92ecdeSBarry Smith 
12ab92ecdeSBarry Smith       MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential
13ab92ecdeSBarry Smith               matrix that represents the operator. For sequential matrices it returns itself.
14ab92ecdeSBarry Smith 
15ab92ecdeSBarry Smith     Input Parameter:
16ab92ecdeSBarry Smith .      A - the Seq or MPI dense matrix
17ab92ecdeSBarry Smith 
18ab92ecdeSBarry Smith     Output Parameter:
19ab92ecdeSBarry Smith .      B - the inner matrix
20ab92ecdeSBarry Smith 
218e6c10adSSatish Balay     Level: intermediate
228e6c10adSSatish Balay 
23ab92ecdeSBarry Smith @*/
24ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B)
25ab92ecdeSBarry Smith {
26ab92ecdeSBarry Smith   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
27ab92ecdeSBarry Smith   PetscErrorCode ierr;
28ace3abfcSBarry Smith   PetscBool      flg;
29ab92ecdeSBarry Smith 
30ab92ecdeSBarry Smith   PetscFunctionBegin;
31251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr);
322205254eSKarl Rupp   if (flg) *B = mat->A;
332205254eSKarl Rupp   else *B = A;
34ab92ecdeSBarry Smith   PetscFunctionReturn(0);
35ab92ecdeSBarry Smith }
36ab92ecdeSBarry Smith 
37ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
38ba8c8a56SBarry Smith {
39ba8c8a56SBarry Smith   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
40ba8c8a56SBarry Smith   PetscErrorCode ierr;
41d0f46423SBarry Smith   PetscInt       lrow,rstart = A->rmap->rstart,rend = A->rmap->rend;
42ba8c8a56SBarry Smith 
43ba8c8a56SBarry Smith   PetscFunctionBegin;
44e7e72b3dSBarry Smith   if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows");
45ba8c8a56SBarry Smith   lrow = row - rstart;
46ba8c8a56SBarry Smith   ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr);
47ba8c8a56SBarry Smith   PetscFunctionReturn(0);
48ba8c8a56SBarry Smith }
49ba8c8a56SBarry Smith 
50ba8c8a56SBarry Smith PetscErrorCode MatRestoreRow_MPIDense(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
51ba8c8a56SBarry Smith {
52ba8c8a56SBarry Smith   PetscErrorCode ierr;
53ba8c8a56SBarry Smith 
54ba8c8a56SBarry Smith   PetscFunctionBegin;
55ba8c8a56SBarry Smith   if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);}
56ba8c8a56SBarry Smith   if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);}
57ba8c8a56SBarry Smith   PetscFunctionReturn(0);
58ba8c8a56SBarry Smith }
59ba8c8a56SBarry Smith 
6011bd1e4dSLisandro Dalcin PetscErrorCode  MatGetDiagonalBlock_MPIDense(Mat A,Mat *a)
610de54da6SSatish Balay {
620de54da6SSatish Balay   Mat_MPIDense   *mdn = (Mat_MPIDense*)A->data;
636849ba73SBarry Smith   PetscErrorCode ierr;
64d0f46423SBarry Smith   PetscInt       m = A->rmap->n,rstart = A->rmap->rstart;
6587828ca2SBarry Smith   PetscScalar    *array;
660de54da6SSatish Balay   MPI_Comm       comm;
6711bd1e4dSLisandro Dalcin   Mat            B;
680de54da6SSatish Balay 
690de54da6SSatish Balay   PetscFunctionBegin;
70e32f2f54SBarry Smith   if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported.");
710de54da6SSatish Balay 
7211bd1e4dSLisandro Dalcin   ierr = PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B);CHKERRQ(ierr);
7311bd1e4dSLisandro Dalcin   if (!B) {
740de54da6SSatish Balay     ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr);
7511bd1e4dSLisandro Dalcin     ierr = MatCreate(comm,&B);CHKERRQ(ierr);
7611bd1e4dSLisandro Dalcin     ierr = MatSetSizes(B,m,m,m,m);CHKERRQ(ierr);
7711bd1e4dSLisandro Dalcin     ierr = MatSetType(B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr);
788c778c55SBarry Smith     ierr = MatDenseGetArray(mdn->A,&array);CHKERRQ(ierr);
7911bd1e4dSLisandro Dalcin     ierr = MatSeqDenseSetPreallocation(B,array+m*rstart);CHKERRQ(ierr);
808c778c55SBarry Smith     ierr = MatDenseRestoreArray(mdn->A,&array);CHKERRQ(ierr);
8111bd1e4dSLisandro Dalcin     ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
8211bd1e4dSLisandro Dalcin     ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
8311bd1e4dSLisandro Dalcin     ierr = PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B);CHKERRQ(ierr);
8411bd1e4dSLisandro Dalcin     *a   = B;
8511bd1e4dSLisandro Dalcin     ierr = MatDestroy(&B);CHKERRQ(ierr);
862205254eSKarl Rupp   } else *a = B;
870de54da6SSatish Balay   PetscFunctionReturn(0);
880de54da6SSatish Balay }
890de54da6SSatish Balay 
9013f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv)
918965ea79SLois Curfman McInnes {
9239b7565bSBarry Smith   Mat_MPIDense   *A = (Mat_MPIDense*)mat->data;
93dfbe8321SBarry Smith   PetscErrorCode ierr;
94d0f46423SBarry Smith   PetscInt       i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row;
95ace3abfcSBarry Smith   PetscBool      roworiented = A->roworiented;
968965ea79SLois Curfman McInnes 
973a40ed3dSBarry Smith   PetscFunctionBegin;
988965ea79SLois Curfman McInnes   for (i=0; i<m; i++) {
995ef9f2a5SBarry Smith     if (idxm[i] < 0) continue;
100e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
1018965ea79SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
1028965ea79SLois Curfman McInnes       row = idxm[i] - rstart;
10339b7565bSBarry Smith       if (roworiented) {
10439b7565bSBarry Smith         ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr);
1053a40ed3dSBarry Smith       } else {
1068965ea79SLois Curfman McInnes         for (j=0; j<n; j++) {
1075ef9f2a5SBarry Smith           if (idxn[j] < 0) continue;
108e32f2f54SBarry Smith           if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
10939b7565bSBarry Smith           ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr);
11039b7565bSBarry Smith         }
1118965ea79SLois Curfman McInnes       }
1122205254eSKarl Rupp     } else if (!A->donotstash) {
1135080c13bSMatthew G Knepley       mat->assembled = PETSC_FALSE;
11439b7565bSBarry Smith       if (roworiented) {
115b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE);CHKERRQ(ierr);
116d36fbae8SSatish Balay       } else {
117b400d20cSBarry Smith         ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE);CHKERRQ(ierr);
11839b7565bSBarry Smith       }
119b49de8d1SLois Curfman McInnes     }
120b49de8d1SLois Curfman McInnes   }
1213a40ed3dSBarry Smith   PetscFunctionReturn(0);
122b49de8d1SLois Curfman McInnes }
123b49de8d1SLois Curfman McInnes 
12413f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
125b49de8d1SLois Curfman McInnes {
126b49de8d1SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
127dfbe8321SBarry Smith   PetscErrorCode ierr;
128d0f46423SBarry Smith   PetscInt       i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row;
129b49de8d1SLois Curfman McInnes 
1303a40ed3dSBarry Smith   PetscFunctionBegin;
131b49de8d1SLois Curfman McInnes   for (i=0; i<m; i++) {
132e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */
133e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
134b49de8d1SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
135b49de8d1SLois Curfman McInnes       row = idxm[i] - rstart;
136b49de8d1SLois Curfman McInnes       for (j=0; j<n; j++) {
137e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */
138e7e72b3dSBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
139b49de8d1SLois Curfman McInnes         ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr);
140b49de8d1SLois Curfman McInnes       }
141e7e72b3dSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
1428965ea79SLois Curfman McInnes   }
1433a40ed3dSBarry Smith   PetscFunctionReturn(0);
1448965ea79SLois Curfman McInnes }
1458965ea79SLois Curfman McInnes 
14649a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A,PetscInt *lda)
14749a6ff4bSBarry Smith {
14849a6ff4bSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
14949a6ff4bSBarry Smith   PetscErrorCode ierr;
15049a6ff4bSBarry Smith 
15149a6ff4bSBarry Smith   PetscFunctionBegin;
15249a6ff4bSBarry Smith   ierr = MatDenseGetLDA(a->A,lda);CHKERRQ(ierr);
15349a6ff4bSBarry Smith   PetscFunctionReturn(0);
15449a6ff4bSBarry Smith }
15549a6ff4bSBarry Smith 
156d3042a70SBarry Smith static PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar *array[])
157ff14e315SSatish Balay {
158ff14e315SSatish Balay   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
159dfbe8321SBarry Smith   PetscErrorCode ierr;
160ff14e315SSatish Balay 
1613a40ed3dSBarry Smith   PetscFunctionBegin;
1628c778c55SBarry Smith   ierr = MatDenseGetArray(a->A,array);CHKERRQ(ierr);
1633a40ed3dSBarry Smith   PetscFunctionReturn(0);
164ff14e315SSatish Balay }
165ff14e315SSatish Balay 
1668572280aSBarry Smith static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A,const PetscScalar *array[])
1678572280aSBarry Smith {
1688572280aSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
1698572280aSBarry Smith   PetscErrorCode ierr;
1708572280aSBarry Smith 
1718572280aSBarry Smith   PetscFunctionBegin;
1728572280aSBarry Smith   ierr = MatDenseGetArrayRead(a->A,array);CHKERRQ(ierr);
1738572280aSBarry Smith   PetscFunctionReturn(0);
1748572280aSBarry Smith }
1758572280aSBarry Smith 
176d3042a70SBarry Smith static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A,const PetscScalar array[])
177d3042a70SBarry Smith {
178d3042a70SBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
179d3042a70SBarry Smith   PetscErrorCode ierr;
180d3042a70SBarry Smith 
181d3042a70SBarry Smith   PetscFunctionBegin;
182d3042a70SBarry Smith   ierr = MatDensePlaceArray(a->A,array);CHKERRQ(ierr);
183d3042a70SBarry Smith   PetscFunctionReturn(0);
184d3042a70SBarry Smith }
185d3042a70SBarry Smith 
186d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_MPIDense(Mat A)
187d3042a70SBarry Smith {
188d3042a70SBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
189d3042a70SBarry Smith   PetscErrorCode ierr;
190d3042a70SBarry Smith 
191d3042a70SBarry Smith   PetscFunctionBegin;
192d3042a70SBarry Smith   ierr = MatDenseResetArray(a->A);CHKERRQ(ierr);
193d3042a70SBarry Smith   PetscFunctionReturn(0);
194d3042a70SBarry Smith }
195d3042a70SBarry Smith 
1967dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B)
197ca3fa75bSLois Curfman McInnes {
198ca3fa75bSLois Curfman McInnes   Mat_MPIDense   *mat  = (Mat_MPIDense*)A->data,*newmatd;
199ca3fa75bSLois Curfman McInnes   Mat_SeqDense   *lmat = (Mat_SeqDense*)mat->A->data;
2006849ba73SBarry Smith   PetscErrorCode ierr;
2014aa3045dSJed Brown   PetscInt       i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols;
2025d0c19d7SBarry Smith   const PetscInt *irow,*icol;
20387828ca2SBarry Smith   PetscScalar    *av,*bv,*v = lmat->v;
204ca3fa75bSLois Curfman McInnes   Mat            newmat;
2054aa3045dSJed Brown   IS             iscol_local;
20642a884f0SBarry Smith   MPI_Comm       comm_is,comm_mat;
207ca3fa75bSLois Curfman McInnes 
208ca3fa75bSLois Curfman McInnes   PetscFunctionBegin;
20942a884f0SBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm_mat);CHKERRQ(ierr);
21042a884f0SBarry Smith   ierr = PetscObjectGetComm((PetscObject)iscol,&comm_is);CHKERRQ(ierr);
21142a884f0SBarry Smith   if (comm_mat != comm_is) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"IS communicator must match matrix communicator");
21242a884f0SBarry Smith 
2134aa3045dSJed Brown   ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
214ca3fa75bSLois Curfman McInnes   ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr);
2154aa3045dSJed Brown   ierr = ISGetIndices(iscol_local,&icol);CHKERRQ(ierr);
216b9b97703SBarry Smith   ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr);
217b9b97703SBarry Smith   ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr);
2184aa3045dSJed Brown   ierr = ISGetSize(iscol,&Ncols);CHKERRQ(ierr); /* global number of columns, size of iscol_local */
219ca3fa75bSLois Curfman McInnes 
220ca3fa75bSLois Curfman McInnes   /* No parallel redistribution currently supported! Should really check each index set
2217eba5e9cSLois Curfman McInnes      to comfirm that it is OK.  ... Currently supports only submatrix same partitioning as
2227eba5e9cSLois Curfman McInnes      original matrix! */
223ca3fa75bSLois Curfman McInnes 
224ca3fa75bSLois Curfman McInnes   ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr);
2257eba5e9cSLois Curfman McInnes   ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr);
226ca3fa75bSLois Curfman McInnes 
227ca3fa75bSLois Curfman McInnes   /* Check submatrix call */
228ca3fa75bSLois Curfman McInnes   if (scall == MAT_REUSE_MATRIX) {
229e32f2f54SBarry Smith     /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */
2307eba5e9cSLois Curfman McInnes     /* Really need to test rows and column sizes! */
231ca3fa75bSLois Curfman McInnes     newmat = *B;
232ca3fa75bSLois Curfman McInnes   } else {
233ca3fa75bSLois Curfman McInnes     /* Create and fill new matrix */
234ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr);
2354aa3045dSJed Brown     ierr = MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols);CHKERRQ(ierr);
2367adad957SLisandro Dalcin     ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr);
2370298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr);
238ca3fa75bSLois Curfman McInnes   }
239ca3fa75bSLois Curfman McInnes 
240ca3fa75bSLois Curfman McInnes   /* Now extract the data pointers and do the copy, column at a time */
241ca3fa75bSLois Curfman McInnes   newmatd = (Mat_MPIDense*)newmat->data;
242ca3fa75bSLois Curfman McInnes   bv      = ((Mat_SeqDense*)newmatd->A->data)->v;
243ca3fa75bSLois Curfman McInnes 
2444aa3045dSJed Brown   for (i=0; i<Ncols; i++) {
24525a33276SHong Zhang     av = v + ((Mat_SeqDense*)mat->A->data)->lda*icol[i];
246ca3fa75bSLois Curfman McInnes     for (j=0; j<nrows; j++) {
2477eba5e9cSLois Curfman McInnes       *bv++ = av[irow[j] - rstart];
248ca3fa75bSLois Curfman McInnes     }
249ca3fa75bSLois Curfman McInnes   }
250ca3fa75bSLois Curfman McInnes 
251ca3fa75bSLois Curfman McInnes   /* Assemble the matrices so that the correct flags are set */
252ca3fa75bSLois Curfman McInnes   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
253ca3fa75bSLois Curfman McInnes   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
254ca3fa75bSLois Curfman McInnes 
255ca3fa75bSLois Curfman McInnes   /* Free work space */
256ca3fa75bSLois Curfman McInnes   ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr);
2575bdf786aSShri Abhyankar   ierr = ISRestoreIndices(iscol_local,&icol);CHKERRQ(ierr);
25832bb1f2dSLisandro Dalcin   ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
259ca3fa75bSLois Curfman McInnes   *B   = newmat;
260ca3fa75bSLois Curfman McInnes   PetscFunctionReturn(0);
261ca3fa75bSLois Curfman McInnes }
262ca3fa75bSLois Curfman McInnes 
2638c778c55SBarry Smith PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar *array[])
264ff14e315SSatish Balay {
26573a71a0fSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
26673a71a0fSBarry Smith   PetscErrorCode ierr;
26773a71a0fSBarry Smith 
2683a40ed3dSBarry Smith   PetscFunctionBegin;
2698c778c55SBarry Smith   ierr = MatDenseRestoreArray(a->A,array);CHKERRQ(ierr);
2703a40ed3dSBarry Smith   PetscFunctionReturn(0);
271ff14e315SSatish Balay }
272ff14e315SSatish Balay 
2738572280aSBarry Smith PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A,const PetscScalar *array[])
2748572280aSBarry Smith {
2758572280aSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
2768572280aSBarry Smith   PetscErrorCode ierr;
2778572280aSBarry Smith 
2788572280aSBarry Smith   PetscFunctionBegin;
2798572280aSBarry Smith   ierr = MatDenseRestoreArrayRead(a->A,array);CHKERRQ(ierr);
2808572280aSBarry Smith   PetscFunctionReturn(0);
2818572280aSBarry Smith }
2828572280aSBarry Smith 
283dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode)
2848965ea79SLois Curfman McInnes {
28539ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
286dfbe8321SBarry Smith   PetscErrorCode ierr;
28713f74950SBarry Smith   PetscInt       nstash,reallocs;
2888965ea79SLois Curfman McInnes 
2893a40ed3dSBarry Smith   PetscFunctionBegin;
290910cf402Sprj-   if (mdn->donotstash || mat->nooffprocentries) return(0);
2918965ea79SLois Curfman McInnes 
292d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
2938798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
294ae15b995SBarry Smith   ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
2953a40ed3dSBarry Smith   PetscFunctionReturn(0);
2968965ea79SLois Curfman McInnes }
2978965ea79SLois Curfman McInnes 
298dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode)
2998965ea79SLois Curfman McInnes {
30039ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn=(Mat_MPIDense*)mat->data;
3016849ba73SBarry Smith   PetscErrorCode ierr;
30213f74950SBarry Smith   PetscInt       i,*row,*col,flg,j,rstart,ncols;
30313f74950SBarry Smith   PetscMPIInt    n;
30487828ca2SBarry Smith   PetscScalar    *val;
3058965ea79SLois Curfman McInnes 
3063a40ed3dSBarry Smith   PetscFunctionBegin;
307910cf402Sprj-   if (!mdn->donotstash && !mat->nooffprocentries) {
3088965ea79SLois Curfman McInnes     /*  wait on receives */
3097ef1d9bdSSatish Balay     while (1) {
3108798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
3117ef1d9bdSSatish Balay       if (!flg) break;
3128965ea79SLois Curfman McInnes 
3137ef1d9bdSSatish Balay       for (i=0; i<n;) {
3147ef1d9bdSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
3152205254eSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
3162205254eSKarl Rupp           if (row[j] != rstart) break;
3172205254eSKarl Rupp         }
3187ef1d9bdSSatish Balay         if (j < n) ncols = j-i;
3197ef1d9bdSSatish Balay         else       ncols = n-i;
3207ef1d9bdSSatish Balay         /* Now assemble all these values with a single function call */
3214b4eb8d3SJed Brown         ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr);
3227ef1d9bdSSatish Balay         i    = j;
3238965ea79SLois Curfman McInnes       }
3247ef1d9bdSSatish Balay     }
3258798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
326910cf402Sprj-   }
3278965ea79SLois Curfman McInnes 
32839ddd567SLois Curfman McInnes   ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr);
32939ddd567SLois Curfman McInnes   ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr);
3308965ea79SLois Curfman McInnes 
3316d4a8577SBarry Smith   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
33239ddd567SLois Curfman McInnes     ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr);
3338965ea79SLois Curfman McInnes   }
3343a40ed3dSBarry Smith   PetscFunctionReturn(0);
3358965ea79SLois Curfman McInnes }
3368965ea79SLois Curfman McInnes 
337dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A)
3388965ea79SLois Curfman McInnes {
339dfbe8321SBarry Smith   PetscErrorCode ierr;
34039ddd567SLois Curfman McInnes   Mat_MPIDense   *l = (Mat_MPIDense*)A->data;
3413a40ed3dSBarry Smith 
3423a40ed3dSBarry Smith   PetscFunctionBegin;
3433a40ed3dSBarry Smith   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
3443a40ed3dSBarry Smith   PetscFunctionReturn(0);
3458965ea79SLois Curfman McInnes }
3468965ea79SLois Curfman McInnes 
3478965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the
3488965ea79SLois Curfman McInnes    matrix is square and the column and row owerships are identical.
3498965ea79SLois Curfman McInnes    This is a BUG. The only way to fix it seems to be to access
3503501a2bdSLois Curfman McInnes    mdn->A and mdn->B directly and not through the MatZeroRows()
3518965ea79SLois Curfman McInnes    routine.
3528965ea79SLois Curfman McInnes */
3532b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
3548965ea79SLois Curfman McInnes {
35539ddd567SLois Curfman McInnes   Mat_MPIDense      *l = (Mat_MPIDense*)A->data;
3566849ba73SBarry Smith   PetscErrorCode    ierr;
357d0f46423SBarry Smith   PetscInt          i,*owners = A->rmap->range;
35876ec1555SBarry Smith   PetscInt          *sizes,j,idx,nsends;
35913f74950SBarry Smith   PetscInt          nmax,*svalues,*starts,*owner,nrecvs;
3607adad957SLisandro Dalcin   PetscInt          *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source;
36113f74950SBarry Smith   PetscInt          *lens,*lrows,*values;
36213f74950SBarry Smith   PetscMPIInt       n,imdex,rank = l->rank,size = l->size;
363ce94432eSBarry Smith   MPI_Comm          comm;
3648965ea79SLois Curfman McInnes   MPI_Request       *send_waits,*recv_waits;
3658965ea79SLois Curfman McInnes   MPI_Status        recv_status,*send_status;
366ace3abfcSBarry Smith   PetscBool         found;
36797b48c8fSBarry Smith   const PetscScalar *xx;
36897b48c8fSBarry Smith   PetscScalar       *bb;
3698965ea79SLois Curfman McInnes 
3703a40ed3dSBarry Smith   PetscFunctionBegin;
371ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
372ce94432eSBarry Smith   if (A->rmap->N != A->cmap->N) SETERRQ(comm,PETSC_ERR_SUP,"Only handles square matrices");
373b9679d65SBarry Smith   if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only handles matrices with identical column and row ownership");
3748965ea79SLois Curfman McInnes   /*  first count number of contributors to each processor */
375f628708eSJed Brown   ierr = PetscCalloc1(2*size,&sizes);CHKERRQ(ierr);
376037dbc42SBarry Smith   ierr = PetscMalloc1(N+1,&owner);CHKERRQ(ierr);  /* see note*/
3778965ea79SLois Curfman McInnes   for (i=0; i<N; i++) {
3788965ea79SLois Curfman McInnes     idx   = rows[i];
37935d8aa7fSBarry Smith     found = PETSC_FALSE;
3808965ea79SLois Curfman McInnes     for (j=0; j<size; j++) {
3818965ea79SLois Curfman McInnes       if (idx >= owners[j] && idx < owners[j+1]) {
38276ec1555SBarry Smith         sizes[2*j]++; sizes[2*j+1] = 1; owner[i] = j; found = PETSC_TRUE; break;
3838965ea79SLois Curfman McInnes       }
3848965ea79SLois Curfman McInnes     }
385e32f2f54SBarry Smith     if (!found) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Index out of range");
3868965ea79SLois Curfman McInnes   }
3872205254eSKarl Rupp   nsends = 0;
38876ec1555SBarry Smith   for (i=0; i<size; i++) nsends += sizes[2*i+1];
3898965ea79SLois Curfman McInnes 
3908965ea79SLois Curfman McInnes   /* inform other processors of number of messages and max length*/
39176ec1555SBarry Smith   ierr = PetscMaxSum(comm,sizes,&nmax,&nrecvs);CHKERRQ(ierr);
3928965ea79SLois Curfman McInnes 
3938965ea79SLois Curfman McInnes   /* post receives:   */
394785e854fSJed Brown   ierr = PetscMalloc1((nrecvs+1)*(nmax+1),&rvalues);CHKERRQ(ierr);
395854ce69bSBarry Smith   ierr = PetscMalloc1(nrecvs+1,&recv_waits);CHKERRQ(ierr);
3968965ea79SLois Curfman McInnes   for (i=0; i<nrecvs; i++) {
39713f74950SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
3988965ea79SLois Curfman McInnes   }
3998965ea79SLois Curfman McInnes 
4008965ea79SLois Curfman McInnes   /* do sends:
4018965ea79SLois Curfman McInnes       1) starts[i] gives the starting index in svalues for stuff going to
4028965ea79SLois Curfman McInnes          the ith processor
4038965ea79SLois Curfman McInnes   */
404854ce69bSBarry Smith   ierr = PetscMalloc1(N+1,&svalues);CHKERRQ(ierr);
405854ce69bSBarry Smith   ierr = PetscMalloc1(nsends+1,&send_waits);CHKERRQ(ierr);
406854ce69bSBarry Smith   ierr = PetscMalloc1(size+1,&starts);CHKERRQ(ierr);
4078965ea79SLois Curfman McInnes 
4088965ea79SLois Curfman McInnes   starts[0] = 0;
40976ec1555SBarry Smith   for (i=1; i<size; i++) starts[i] = starts[i-1] + sizes[2*i-2];
4102205254eSKarl Rupp   for (i=0; i<N; i++) svalues[starts[owner[i]]++] = rows[i];
4112205254eSKarl Rupp 
4122205254eSKarl Rupp   starts[0] = 0;
41376ec1555SBarry Smith   for (i=1; i<size+1; i++) starts[i] = starts[i-1] + sizes[2*i-2];
4148965ea79SLois Curfman McInnes   count = 0;
4158965ea79SLois Curfman McInnes   for (i=0; i<size; i++) {
41676ec1555SBarry Smith     if (sizes[2*i+1]) {
41776ec1555SBarry Smith       ierr = MPI_Isend(svalues+starts[i],sizes[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
4188965ea79SLois Curfman McInnes     }
4198965ea79SLois Curfman McInnes   }
420606d414cSSatish Balay   ierr = PetscFree(starts);CHKERRQ(ierr);
4218965ea79SLois Curfman McInnes 
4228965ea79SLois Curfman McInnes   base = owners[rank];
4238965ea79SLois Curfman McInnes 
4248965ea79SLois Curfman McInnes   /*  wait on receives */
425dcca6d9dSJed Brown   ierr  = PetscMalloc2(nrecvs,&lens,nrecvs,&source);CHKERRQ(ierr);
42674ed9c26SBarry Smith   count = nrecvs;
42774ed9c26SBarry Smith   slen  = 0;
4288965ea79SLois Curfman McInnes   while (count) {
429ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
4308965ea79SLois Curfman McInnes     /* unpack receives into our local space */
43113f74950SBarry Smith     ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr);
4322205254eSKarl Rupp 
4338965ea79SLois Curfman McInnes     source[imdex] = recv_status.MPI_SOURCE;
4348965ea79SLois Curfman McInnes     lens[imdex]   = n;
4358965ea79SLois Curfman McInnes     slen += n;
4368965ea79SLois Curfman McInnes     count--;
4378965ea79SLois Curfman McInnes   }
438606d414cSSatish Balay   ierr = PetscFree(recv_waits);CHKERRQ(ierr);
4398965ea79SLois Curfman McInnes 
4408965ea79SLois Curfman McInnes   /* move the data into the send scatter */
441854ce69bSBarry Smith   ierr  = PetscMalloc1(slen+1,&lrows);CHKERRQ(ierr);
4428965ea79SLois Curfman McInnes   count = 0;
4438965ea79SLois Curfman McInnes   for (i=0; i<nrecvs; i++) {
4448965ea79SLois Curfman McInnes     values = rvalues + i*nmax;
4458965ea79SLois Curfman McInnes     for (j=0; j<lens[i]; j++) {
4468965ea79SLois Curfman McInnes       lrows[count++] = values[j] - base;
4478965ea79SLois Curfman McInnes     }
4488965ea79SLois Curfman McInnes   }
449606d414cSSatish Balay   ierr = PetscFree(rvalues);CHKERRQ(ierr);
45074ed9c26SBarry Smith   ierr = PetscFree2(lens,source);CHKERRQ(ierr);
451606d414cSSatish Balay   ierr = PetscFree(owner);CHKERRQ(ierr);
45276ec1555SBarry Smith   ierr = PetscFree(sizes);CHKERRQ(ierr);
4538965ea79SLois Curfman McInnes 
45497b48c8fSBarry Smith   /* fix right hand side if needed */
45597b48c8fSBarry Smith   if (x && b) {
45697b48c8fSBarry Smith     ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr);
45797b48c8fSBarry Smith     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
45897b48c8fSBarry Smith     for (i=0; i<slen; i++) {
45997b48c8fSBarry Smith       bb[lrows[i]] = diag*xx[lrows[i]];
46097b48c8fSBarry Smith     }
46197b48c8fSBarry Smith     ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr);
46297b48c8fSBarry Smith     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
46397b48c8fSBarry Smith   }
46497b48c8fSBarry Smith 
4658965ea79SLois Curfman McInnes   /* actually zap the local rows */
466b9679d65SBarry Smith   ierr = MatZeroRows(l->A,slen,lrows,0.0,0,0);CHKERRQ(ierr);
467e2eb51b1SBarry Smith   if (diag != 0.0) {
468b9679d65SBarry Smith     Mat_SeqDense *ll = (Mat_SeqDense*)l->A->data;
469b9679d65SBarry Smith     PetscInt     m   = ll->lda, i;
470b9679d65SBarry Smith 
471b9679d65SBarry Smith     for (i=0; i<slen; i++) {
472b9679d65SBarry Smith       ll->v[lrows[i] + m*(A->cmap->rstart + lrows[i])] = diag;
473b9679d65SBarry Smith     }
474b9679d65SBarry Smith   }
475606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
4768965ea79SLois Curfman McInnes 
4778965ea79SLois Curfman McInnes   /* wait on sends */
4788965ea79SLois Curfman McInnes   if (nsends) {
479785e854fSJed Brown     ierr = PetscMalloc1(nsends,&send_status);CHKERRQ(ierr);
480ca161407SBarry Smith     ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
481606d414cSSatish Balay     ierr = PetscFree(send_status);CHKERRQ(ierr);
4828965ea79SLois Curfman McInnes   }
483606d414cSSatish Balay   ierr = PetscFree(send_waits);CHKERRQ(ierr);
484606d414cSSatish Balay   ierr = PetscFree(svalues);CHKERRQ(ierr);
4853a40ed3dSBarry Smith   PetscFunctionReturn(0);
4868965ea79SLois Curfman McInnes }
4878965ea79SLois Curfman McInnes 
488cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec);
489cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec);
490cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec);
491cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec);
492cc2e6a90SBarry Smith 
493dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy)
4948965ea79SLois Curfman McInnes {
49539ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
496dfbe8321SBarry Smith   PetscErrorCode ierr;
497c456f294SBarry Smith 
4983a40ed3dSBarry Smith   PetscFunctionBegin;
499ca9f406cSSatish Balay   ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
500ca9f406cSSatish Balay   ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
501cc2e6a90SBarry Smith   ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy);CHKERRQ(ierr);
5023a40ed3dSBarry Smith   PetscFunctionReturn(0);
5038965ea79SLois Curfman McInnes }
5048965ea79SLois Curfman McInnes 
505dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz)
5068965ea79SLois Curfman McInnes {
50739ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
508dfbe8321SBarry Smith   PetscErrorCode ierr;
509c456f294SBarry Smith 
5103a40ed3dSBarry Smith   PetscFunctionBegin;
511ca9f406cSSatish Balay   ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
512ca9f406cSSatish Balay   ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
513cc2e6a90SBarry Smith   ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr);
5143a40ed3dSBarry Smith   PetscFunctionReturn(0);
5158965ea79SLois Curfman McInnes }
5168965ea79SLois Curfman McInnes 
517dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy)
518096963f5SLois Curfman McInnes {
519096963f5SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
520dfbe8321SBarry Smith   PetscErrorCode ierr;
52187828ca2SBarry Smith   PetscScalar    zero = 0.0;
522096963f5SLois Curfman McInnes 
5233a40ed3dSBarry Smith   PetscFunctionBegin;
5242dcb1b2aSMatthew Knepley   ierr = VecSet(yy,zero);CHKERRQ(ierr);
525cc2e6a90SBarry Smith   ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr);
526ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
527ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
5283a40ed3dSBarry Smith   PetscFunctionReturn(0);
529096963f5SLois Curfman McInnes }
530096963f5SLois Curfman McInnes 
531dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz)
532096963f5SLois Curfman McInnes {
533096963f5SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
534dfbe8321SBarry Smith   PetscErrorCode ierr;
535096963f5SLois Curfman McInnes 
5363a40ed3dSBarry Smith   PetscFunctionBegin;
5373501a2bdSLois Curfman McInnes   ierr = VecCopy(yy,zz);CHKERRQ(ierr);
538cc2e6a90SBarry Smith   ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr);
539ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
540ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
5413a40ed3dSBarry Smith   PetscFunctionReturn(0);
542096963f5SLois Curfman McInnes }
543096963f5SLois Curfman McInnes 
544dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v)
5458965ea79SLois Curfman McInnes {
54639ddd567SLois Curfman McInnes   Mat_MPIDense   *a    = (Mat_MPIDense*)A->data;
547096963f5SLois Curfman McInnes   Mat_SeqDense   *aloc = (Mat_SeqDense*)a->A->data;
548dfbe8321SBarry Smith   PetscErrorCode ierr;
549d0f46423SBarry Smith   PetscInt       len,i,n,m = A->rmap->n,radd;
55087828ca2SBarry Smith   PetscScalar    *x,zero = 0.0;
551ed3cc1f0SBarry Smith 
5523a40ed3dSBarry Smith   PetscFunctionBegin;
5532dcb1b2aSMatthew Knepley   ierr = VecSet(v,zero);CHKERRQ(ierr);
5541ebc52fbSHong Zhang   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
555096963f5SLois Curfman McInnes   ierr = VecGetSize(v,&n);CHKERRQ(ierr);
556e32f2f54SBarry Smith   if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec");
557d0f46423SBarry Smith   len  = PetscMin(a->A->rmap->n,a->A->cmap->n);
558d0f46423SBarry Smith   radd = A->rmap->rstart*m;
55944cd7ae7SLois Curfman McInnes   for (i=0; i<len; i++) {
560096963f5SLois Curfman McInnes     x[i] = aloc->v[radd + i*m + i];
561096963f5SLois Curfman McInnes   }
5621ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
5633a40ed3dSBarry Smith   PetscFunctionReturn(0);
5648965ea79SLois Curfman McInnes }
5658965ea79SLois Curfman McInnes 
566dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat)
5678965ea79SLois Curfman McInnes {
5683501a2bdSLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
569dfbe8321SBarry Smith   PetscErrorCode ierr;
570ed3cc1f0SBarry Smith 
5713a40ed3dSBarry Smith   PetscFunctionBegin;
572aa482453SBarry Smith #if defined(PETSC_USE_LOG)
573d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N);
5748965ea79SLois Curfman McInnes #endif
5758798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
5766bf464f9SBarry Smith   ierr = MatDestroy(&mdn->A);CHKERRQ(ierr);
5776bf464f9SBarry Smith   ierr = VecDestroy(&mdn->lvec);CHKERRQ(ierr);
5786bf464f9SBarry Smith   ierr = VecScatterDestroy(&mdn->Mvctx);CHKERRQ(ierr);
57901b82886SBarry Smith 
580bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
581dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
5828baccfbdSHong Zhang 
58349a6ff4bSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL);CHKERRQ(ierr);
5848baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr);
5858572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr);
5868572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL);CHKERRQ(ierr);
5878572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL);CHKERRQ(ierr);
588d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL);CHKERRQ(ierr);
589d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL);CHKERRQ(ierr);
5908baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
5918baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL);CHKERRQ(ierr);
5928baccfbdSHong Zhang #endif
593bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL);CHKERRQ(ierr);
5944222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
5954222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",NULL);CHKERRQ(ierr);
596bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
597bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
59852c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_nest_mpidense_C",NULL);CHKERRQ(ierr);
59952c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_nest_mpidense_C",NULL);CHKERRQ(ierr);
6008baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
6018baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
60286aefd0dSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL);CHKERRQ(ierr);
60386aefd0dSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL);CHKERRQ(ierr);
6043a40ed3dSBarry Smith   PetscFunctionReturn(0);
6058965ea79SLois Curfman McInnes }
60639ddd567SLois Curfman McInnes 
60752c5f739Sprj- PETSC_INTERN PetscErrorCode MatView_SeqDense(Mat,PetscViewer);
60852c5f739Sprj- 
6099804daf3SBarry Smith #include <petscdraw.h>
6106849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
6118965ea79SLois Curfman McInnes {
61239ddd567SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)mat->data;
613dfbe8321SBarry Smith   PetscErrorCode    ierr;
6147da1fb6eSBarry Smith   PetscMPIInt       rank = mdn->rank;
61519fd82e9SBarry Smith   PetscViewerType   vtype;
616ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
617b0a32e0cSBarry Smith   PetscViewer       sviewer;
618f3ef73ceSBarry Smith   PetscViewerFormat format;
6198965ea79SLois Curfman McInnes 
6203a40ed3dSBarry Smith   PetscFunctionBegin;
621251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
622251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
62332077d6dSBarry Smith   if (iascii) {
624b0a32e0cSBarry Smith     ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr);
625b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
626456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
6274e220ebcSLois Curfman McInnes       MatInfo info;
628888f2ed8SSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
6291575c14dSBarry Smith       ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr);
6307b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"  [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr);
631b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
6321575c14dSBarry Smith       ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr);
6335d00a290SHong Zhang       ierr = VecScatterView(mdn->Mvctx,viewer);CHKERRQ(ierr);
6343a40ed3dSBarry Smith       PetscFunctionReturn(0);
635fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
6363a40ed3dSBarry Smith       PetscFunctionReturn(0);
6378965ea79SLois Curfman McInnes     }
638f1af5d2fSBarry Smith   } else if (isdraw) {
639b0a32e0cSBarry Smith     PetscDraw draw;
640ace3abfcSBarry Smith     PetscBool isnull;
641f1af5d2fSBarry Smith 
642b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
643b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
644f1af5d2fSBarry Smith     if (isnull) PetscFunctionReturn(0);
645f1af5d2fSBarry Smith   }
64677ed5343SBarry Smith 
6477da1fb6eSBarry Smith   {
6488965ea79SLois Curfman McInnes     /* assemble the entire matrix onto first processor. */
6498965ea79SLois Curfman McInnes     Mat         A;
650d0f46423SBarry Smith     PetscInt    M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz;
651ba8c8a56SBarry Smith     PetscInt    *cols;
652ba8c8a56SBarry Smith     PetscScalar *vals;
6538965ea79SLois Curfman McInnes 
654ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
6558965ea79SLois Curfman McInnes     if (!rank) {
656f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
6573a40ed3dSBarry Smith     } else {
658f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
6598965ea79SLois Curfman McInnes     }
6607adad957SLisandro Dalcin     /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */
661878740d9SKris Buschelman     ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr);
6620298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr);
6633bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
6648965ea79SLois Curfman McInnes 
66539ddd567SLois Curfman McInnes     /* Copy the matrix ... This isn't the most efficient means,
66639ddd567SLois Curfman McInnes        but it's quick for now */
66751022da4SBarry Smith     A->insertmode = INSERT_VALUES;
6682205254eSKarl Rupp 
6692205254eSKarl Rupp     row = mat->rmap->rstart;
6702205254eSKarl Rupp     m   = mdn->A->rmap->n;
6718965ea79SLois Curfman McInnes     for (i=0; i<m; i++) {
672ba8c8a56SBarry Smith       ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr);
673ba8c8a56SBarry Smith       ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr);
674ba8c8a56SBarry Smith       ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr);
67539ddd567SLois Curfman McInnes       row++;
6768965ea79SLois Curfman McInnes     }
6778965ea79SLois Curfman McInnes 
6786d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
6796d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
6803f08860eSBarry Smith     ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
681b9b97703SBarry Smith     if (!rank) {
6821a9d3c3cSBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
6837da1fb6eSBarry Smith       ierr = MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr);
6848965ea79SLois Curfman McInnes     }
6853f08860eSBarry Smith     ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
686b0a32e0cSBarry Smith     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
6876bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
6888965ea79SLois Curfman McInnes   }
6893a40ed3dSBarry Smith   PetscFunctionReturn(0);
6908965ea79SLois Curfman McInnes }
6918965ea79SLois Curfman McInnes 
692dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer)
6938965ea79SLois Curfman McInnes {
694dfbe8321SBarry Smith   PetscErrorCode ierr;
695ace3abfcSBarry Smith   PetscBool      iascii,isbinary,isdraw,issocket;
6968965ea79SLois Curfman McInnes 
697433994e6SBarry Smith   PetscFunctionBegin;
698251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
699251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
700251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
701251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
7020f5bd95cSBarry Smith 
70332077d6dSBarry Smith   if (iascii || issocket || isdraw) {
704f1af5d2fSBarry Smith     ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
7050f5bd95cSBarry Smith   } else if (isbinary) {
7068491ab44SLisandro Dalcin     ierr = MatView_Dense_Binary(mat,viewer);CHKERRQ(ierr);
70711aeaf0aSBarry Smith   }
7083a40ed3dSBarry Smith   PetscFunctionReturn(0);
7098965ea79SLois Curfman McInnes }
7108965ea79SLois Curfman McInnes 
711dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info)
7128965ea79SLois Curfman McInnes {
7133501a2bdSLois Curfman McInnes   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
7143501a2bdSLois Curfman McInnes   Mat            mdn  = mat->A;
715dfbe8321SBarry Smith   PetscErrorCode ierr;
7163966268fSBarry Smith   PetscLogDouble isend[5],irecv[5];
7178965ea79SLois Curfman McInnes 
7183a40ed3dSBarry Smith   PetscFunctionBegin;
7194e220ebcSLois Curfman McInnes   info->block_size = 1.0;
7202205254eSKarl Rupp 
7214e220ebcSLois Curfman McInnes   ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr);
7222205254eSKarl Rupp 
7234e220ebcSLois Curfman McInnes   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
7244e220ebcSLois Curfman McInnes   isend[3] = info->memory;  isend[4] = info->mallocs;
7258965ea79SLois Curfman McInnes   if (flag == MAT_LOCAL) {
7264e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
7274e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
7284e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
7294e220ebcSLois Curfman McInnes     info->memory       = isend[3];
7304e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
7318965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
7323966268fSBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
7332205254eSKarl Rupp 
7344e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
7354e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
7364e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
7374e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
7384e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
7398965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
7403966268fSBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
7412205254eSKarl Rupp 
7424e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
7434e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
7444e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
7454e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
7464e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
7478965ea79SLois Curfman McInnes   }
7484e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
7494e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
7504e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
7513a40ed3dSBarry Smith   PetscFunctionReturn(0);
7528965ea79SLois Curfman McInnes }
7538965ea79SLois Curfman McInnes 
754ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg)
7558965ea79SLois Curfman McInnes {
75639ddd567SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
757dfbe8321SBarry Smith   PetscErrorCode ierr;
7588965ea79SLois Curfman McInnes 
7593a40ed3dSBarry Smith   PetscFunctionBegin;
76012c028f9SKris Buschelman   switch (op) {
761512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
76212c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
76312c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
76443674050SBarry Smith     MatCheckPreallocated(A,1);
7654e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
76612c028f9SKris Buschelman     break;
76712c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
76843674050SBarry Smith     MatCheckPreallocated(A,1);
7694e0d8c25SBarry Smith     a->roworiented = flg;
7704e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
77112c028f9SKris Buschelman     break;
7724e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
77313fa8e87SLisandro Dalcin   case MAT_KEEP_NONZERO_PATTERN:
77412c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
775071fcb05SBarry Smith   case MAT_SORTED_FULL:
776290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
77712c028f9SKris Buschelman     break;
77812c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
7794e0d8c25SBarry Smith     a->donotstash = flg;
78012c028f9SKris Buschelman     break;
78177e54ba9SKris Buschelman   case MAT_SYMMETRIC:
78277e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
7839a4540c5SBarry Smith   case MAT_HERMITIAN:
7849a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
785600fe468SBarry Smith   case MAT_IGNORE_LOWER_TRIANGULAR:
7865d7aebe8SStefano Zampini   case MAT_IGNORE_ZERO_ENTRIES:
787290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
78877e54ba9SKris Buschelman     break;
78912c028f9SKris Buschelman   default:
790e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]);
7913a40ed3dSBarry Smith   }
7923a40ed3dSBarry Smith   PetscFunctionReturn(0);
7938965ea79SLois Curfman McInnes }
7948965ea79SLois Curfman McInnes 
7958965ea79SLois Curfman McInnes 
796dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr)
7975b2fa520SLois Curfman McInnes {
7985b2fa520SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)A->data;
7995b2fa520SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)mdn->A->data;
800bca11509SBarry Smith   const PetscScalar *l,*r;
801bca11509SBarry Smith   PetscScalar       x,*v;
802dfbe8321SBarry Smith   PetscErrorCode    ierr;
803d0f46423SBarry Smith   PetscInt          i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n;
8045b2fa520SLois Curfman McInnes 
8055b2fa520SLois Curfman McInnes   PetscFunctionBegin;
80672d926a5SLois Curfman McInnes   ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr);
8075b2fa520SLois Curfman McInnes   if (ll) {
80872d926a5SLois Curfman McInnes     ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr);
809e32f2f54SBarry Smith     if (s2a != s2) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %d != %d.", s2a, s2);
810bca11509SBarry Smith     ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr);
8115b2fa520SLois Curfman McInnes     for (i=0; i<m; i++) {
8125b2fa520SLois Curfman McInnes       x = l[i];
8135b2fa520SLois Curfman McInnes       v = mat->v + i;
8145b2fa520SLois Curfman McInnes       for (j=0; j<n; j++) { (*v) *= x; v+= m;}
8155b2fa520SLois Curfman McInnes     }
816bca11509SBarry Smith     ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr);
817efee365bSSatish Balay     ierr = PetscLogFlops(n*m);CHKERRQ(ierr);
8185b2fa520SLois Curfman McInnes   }
8195b2fa520SLois Curfman McInnes   if (rr) {
820175be7b4SMatthew Knepley     ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr);
821e32f2f54SBarry Smith     if (s3a != s3) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3);
822ca9f406cSSatish Balay     ierr = VecScatterBegin(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
823ca9f406cSSatish Balay     ierr = VecScatterEnd(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
824bca11509SBarry Smith     ierr = VecGetArrayRead(mdn->lvec,&r);CHKERRQ(ierr);
8255b2fa520SLois Curfman McInnes     for (i=0; i<n; i++) {
8265b2fa520SLois Curfman McInnes       x = r[i];
8275b2fa520SLois Curfman McInnes       v = mat->v + i*m;
8282205254eSKarl Rupp       for (j=0; j<m; j++) (*v++) *= x;
8295b2fa520SLois Curfman McInnes     }
830bca11509SBarry Smith     ierr = VecRestoreArrayRead(mdn->lvec,&r);CHKERRQ(ierr);
831efee365bSSatish Balay     ierr = PetscLogFlops(n*m);CHKERRQ(ierr);
8325b2fa520SLois Curfman McInnes   }
8335b2fa520SLois Curfman McInnes   PetscFunctionReturn(0);
8345b2fa520SLois Curfman McInnes }
8355b2fa520SLois Curfman McInnes 
836dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm)
837096963f5SLois Curfman McInnes {
8383501a2bdSLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)A->data;
8393501a2bdSLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)mdn->A->data;
840dfbe8321SBarry Smith   PetscErrorCode ierr;
84113f74950SBarry Smith   PetscInt       i,j;
842329f5518SBarry Smith   PetscReal      sum = 0.0;
84387828ca2SBarry Smith   PetscScalar    *v  = mat->v;
8443501a2bdSLois Curfman McInnes 
8453a40ed3dSBarry Smith   PetscFunctionBegin;
8463501a2bdSLois Curfman McInnes   if (mdn->size == 1) {
847064f8208SBarry Smith     ierr =  MatNorm(mdn->A,type,nrm);CHKERRQ(ierr);
8483501a2bdSLois Curfman McInnes   } else {
8493501a2bdSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
850d0f46423SBarry Smith       for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) {
851329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
8523501a2bdSLois Curfman McInnes       }
853b2566f29SBarry Smith       ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
8548f1a2a5eSBarry Smith       *nrm = PetscSqrtReal(*nrm);
855dc0b31edSSatish Balay       ierr = PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr);
8563a40ed3dSBarry Smith     } else if (type == NORM_1) {
857329f5518SBarry Smith       PetscReal *tmp,*tmp2;
858580bdb30SBarry Smith       ierr = PetscCalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2);CHKERRQ(ierr);
859064f8208SBarry Smith       *nrm = 0.0;
8603501a2bdSLois Curfman McInnes       v    = mat->v;
861d0f46423SBarry Smith       for (j=0; j<mdn->A->cmap->n; j++) {
862d0f46423SBarry Smith         for (i=0; i<mdn->A->rmap->n; i++) {
86367e560aaSBarry Smith           tmp[j] += PetscAbsScalar(*v);  v++;
8643501a2bdSLois Curfman McInnes         }
8653501a2bdSLois Curfman McInnes       }
866b2566f29SBarry Smith       ierr = MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
867d0f46423SBarry Smith       for (j=0; j<A->cmap->N; j++) {
868064f8208SBarry Smith         if (tmp2[j] > *nrm) *nrm = tmp2[j];
8693501a2bdSLois Curfman McInnes       }
8708627564fSBarry Smith       ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr);
871d0f46423SBarry Smith       ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr);
8723a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
873329f5518SBarry Smith       PetscReal ntemp;
8743501a2bdSLois Curfman McInnes       ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr);
875b2566f29SBarry Smith       ierr = MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
876ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm");
8773501a2bdSLois Curfman McInnes   }
8783a40ed3dSBarry Smith   PetscFunctionReturn(0);
8793501a2bdSLois Curfman McInnes }
8803501a2bdSLois Curfman McInnes 
881fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout)
8823501a2bdSLois Curfman McInnes {
8833501a2bdSLois Curfman McInnes   Mat_MPIDense   *a    = (Mat_MPIDense*)A->data;
8843501a2bdSLois Curfman McInnes   Mat_SeqDense   *Aloc = (Mat_SeqDense*)a->A->data;
8853501a2bdSLois Curfman McInnes   Mat            B;
886d0f46423SBarry Smith   PetscInt       M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart;
8876849ba73SBarry Smith   PetscErrorCode ierr;
88813f74950SBarry Smith   PetscInt       j,i;
88987828ca2SBarry Smith   PetscScalar    *v;
8903501a2bdSLois Curfman McInnes 
8913a40ed3dSBarry Smith   PetscFunctionBegin;
892cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) {
893ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
894d0f46423SBarry Smith     ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr);
8957adad957SLisandro Dalcin     ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr);
8960298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(B,NULL);CHKERRQ(ierr);
897fc4dec0aSBarry Smith   } else {
898fc4dec0aSBarry Smith     B = *matout;
899fc4dec0aSBarry Smith   }
9003501a2bdSLois Curfman McInnes 
901d0f46423SBarry Smith   m    = a->A->rmap->n; n = a->A->cmap->n; v = Aloc->v;
902785e854fSJed Brown   ierr = PetscMalloc1(m,&rwork);CHKERRQ(ierr);
9033501a2bdSLois Curfman McInnes   for (i=0; i<m; i++) rwork[i] = rstart + i;
9041acff37aSSatish Balay   for (j=0; j<n; j++) {
9053501a2bdSLois Curfman McInnes     ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr);
9063501a2bdSLois Curfman McInnes     v   += m;
9073501a2bdSLois Curfman McInnes   }
908606d414cSSatish Balay   ierr = PetscFree(rwork);CHKERRQ(ierr);
9096d4a8577SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
9106d4a8577SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
911cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) {
9123501a2bdSLois Curfman McInnes     *matout = B;
9133501a2bdSLois Curfman McInnes   } else {
91428be2f97SBarry Smith     ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr);
9153501a2bdSLois Curfman McInnes   }
9163a40ed3dSBarry Smith   PetscFunctionReturn(0);
917096963f5SLois Curfman McInnes }
918096963f5SLois Curfman McInnes 
9196849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*);
92052c5f739Sprj- PETSC_INTERN PetscErrorCode MatScale_MPIDense(Mat,PetscScalar);
9218965ea79SLois Curfman McInnes 
9224994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A)
923273d9f13SBarry Smith {
924dfbe8321SBarry Smith   PetscErrorCode ierr;
925273d9f13SBarry Smith 
926273d9f13SBarry Smith   PetscFunctionBegin;
92718992e5dSStefano Zampini   ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr);
92818992e5dSStefano Zampini   ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr);
92918992e5dSStefano Zampini   if (!A->preallocated) {
930273d9f13SBarry Smith     ierr = MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr);
93118992e5dSStefano Zampini   }
932273d9f13SBarry Smith   PetscFunctionReturn(0);
933273d9f13SBarry Smith }
934273d9f13SBarry Smith 
935488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str)
936488007eeSBarry Smith {
937488007eeSBarry Smith   PetscErrorCode ierr;
938488007eeSBarry Smith   Mat_MPIDense   *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data;
939488007eeSBarry Smith 
940488007eeSBarry Smith   PetscFunctionBegin;
941488007eeSBarry Smith   ierr = MatAXPY(A->A,alpha,B->A,str);CHKERRQ(ierr);
942a3fa217bSJose E. Roman   ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
943488007eeSBarry Smith   PetscFunctionReturn(0);
944488007eeSBarry Smith }
945488007eeSBarry Smith 
9467087cfbeSBarry Smith PetscErrorCode  MatConjugate_MPIDense(Mat mat)
947ba337c44SJed Brown {
948ba337c44SJed Brown   Mat_MPIDense   *a = (Mat_MPIDense*)mat->data;
949ba337c44SJed Brown   PetscErrorCode ierr;
950ba337c44SJed Brown 
951ba337c44SJed Brown   PetscFunctionBegin;
952ba337c44SJed Brown   ierr = MatConjugate(a->A);CHKERRQ(ierr);
953ba337c44SJed Brown   PetscFunctionReturn(0);
954ba337c44SJed Brown }
955ba337c44SJed Brown 
956ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A)
957ba337c44SJed Brown {
958ba337c44SJed Brown   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
959ba337c44SJed Brown   PetscErrorCode ierr;
960ba337c44SJed Brown 
961ba337c44SJed Brown   PetscFunctionBegin;
962ba337c44SJed Brown   ierr = MatRealPart(a->A);CHKERRQ(ierr);
963ba337c44SJed Brown   PetscFunctionReturn(0);
964ba337c44SJed Brown }
965ba337c44SJed Brown 
966ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A)
967ba337c44SJed Brown {
968ba337c44SJed Brown   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
969ba337c44SJed Brown   PetscErrorCode ierr;
970ba337c44SJed Brown 
971ba337c44SJed Brown   PetscFunctionBegin;
972ba337c44SJed Brown   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
973ba337c44SJed Brown   PetscFunctionReturn(0);
974ba337c44SJed Brown }
975ba337c44SJed Brown 
97649a6ff4bSBarry Smith static PetscErrorCode MatGetColumnVector_MPIDense(Mat A,Vec v,PetscInt col)
97749a6ff4bSBarry Smith {
97849a6ff4bSBarry Smith   PetscErrorCode    ierr;
97949a6ff4bSBarry Smith   PetscScalar       *x;
98049a6ff4bSBarry Smith   const PetscScalar *a;
98149a6ff4bSBarry Smith   PetscInt          lda;
98249a6ff4bSBarry Smith 
98349a6ff4bSBarry Smith   PetscFunctionBegin;
98449a6ff4bSBarry Smith   if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
98549a6ff4bSBarry Smith   ierr = MatDenseGetLDA(A,&lda);CHKERRQ(ierr);
98649a6ff4bSBarry Smith   ierr = MatDenseGetArrayRead(A,&a);CHKERRQ(ierr);
98749a6ff4bSBarry Smith   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
988580bdb30SBarry Smith   ierr = PetscArraycpy(x,a+col*lda,A->rmap->n);CHKERRQ(ierr);
98949a6ff4bSBarry Smith   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
99049a6ff4bSBarry Smith   ierr = MatDenseGetArrayRead(A,&a);CHKERRQ(ierr);
99149a6ff4bSBarry Smith   PetscFunctionReturn(0);
99249a6ff4bSBarry Smith }
99349a6ff4bSBarry Smith 
99452c5f739Sprj- PETSC_INTERN PetscErrorCode MatGetColumnNorms_SeqDense(Mat,NormType,PetscReal*);
99552c5f739Sprj- 
9960716a85fSBarry Smith PetscErrorCode MatGetColumnNorms_MPIDense(Mat A,NormType type,PetscReal *norms)
9970716a85fSBarry Smith {
9980716a85fSBarry Smith   PetscErrorCode ierr;
9990716a85fSBarry Smith   PetscInt       i,n;
10000716a85fSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*) A->data;
10010716a85fSBarry Smith   PetscReal      *work;
10020716a85fSBarry Smith 
10030716a85fSBarry Smith   PetscFunctionBegin;
10040298fd71SBarry Smith   ierr = MatGetSize(A,NULL,&n);CHKERRQ(ierr);
1005785e854fSJed Brown   ierr = PetscMalloc1(n,&work);CHKERRQ(ierr);
10060716a85fSBarry Smith   ierr = MatGetColumnNorms_SeqDense(a->A,type,work);CHKERRQ(ierr);
10070716a85fSBarry Smith   if (type == NORM_2) {
10080716a85fSBarry Smith     for (i=0; i<n; i++) work[i] *= work[i];
10090716a85fSBarry Smith   }
10100716a85fSBarry Smith   if (type == NORM_INFINITY) {
1011b2566f29SBarry Smith     ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_MAX,A->hdr.comm);CHKERRQ(ierr);
10120716a85fSBarry Smith   } else {
1013b2566f29SBarry Smith     ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_SUM,A->hdr.comm);CHKERRQ(ierr);
10140716a85fSBarry Smith   }
10150716a85fSBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
10160716a85fSBarry Smith   if (type == NORM_2) {
10178f1a2a5eSBarry Smith     for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]);
10180716a85fSBarry Smith   }
10190716a85fSBarry Smith   PetscFunctionReturn(0);
10200716a85fSBarry Smith }
10210716a85fSBarry Smith 
102273a71a0fSBarry Smith static PetscErrorCode  MatSetRandom_MPIDense(Mat x,PetscRandom rctx)
102373a71a0fSBarry Smith {
102473a71a0fSBarry Smith   Mat_MPIDense   *d = (Mat_MPIDense*)x->data;
102573a71a0fSBarry Smith   PetscErrorCode ierr;
102673a71a0fSBarry Smith   PetscScalar    *a;
102773a71a0fSBarry Smith   PetscInt       m,n,i;
102873a71a0fSBarry Smith 
102973a71a0fSBarry Smith   PetscFunctionBegin;
103073a71a0fSBarry Smith   ierr = MatGetSize(d->A,&m,&n);CHKERRQ(ierr);
10318c778c55SBarry Smith   ierr = MatDenseGetArray(d->A,&a);CHKERRQ(ierr);
103273a71a0fSBarry Smith   for (i=0; i<m*n; i++) {
103373a71a0fSBarry Smith     ierr = PetscRandomGetValue(rctx,a+i);CHKERRQ(ierr);
103473a71a0fSBarry Smith   }
10358c778c55SBarry Smith   ierr = MatDenseRestoreArray(d->A,&a);CHKERRQ(ierr);
103673a71a0fSBarry Smith   PetscFunctionReturn(0);
103773a71a0fSBarry Smith }
103873a71a0fSBarry Smith 
103952c5f739Sprj- PETSC_INTERN PetscErrorCode MatMatMultNumeric_MPIDense(Mat A,Mat,Mat);
1040fd4e9aacSBarry Smith 
10413b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool  *missing,PetscInt *d)
10423b49f96aSBarry Smith {
10433b49f96aSBarry Smith   PetscFunctionBegin;
10443b49f96aSBarry Smith   *missing = PETSC_FALSE;
10453b49f96aSBarry Smith   PetscFunctionReturn(0);
10463b49f96aSBarry Smith }
10473b49f96aSBarry Smith 
10484222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat);
1049cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat);
1050cc48ffa7SToby Isaac 
10518965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/
105209dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense,
105309dc0095SBarry Smith                                         MatGetRow_MPIDense,
105409dc0095SBarry Smith                                         MatRestoreRow_MPIDense,
105509dc0095SBarry Smith                                         MatMult_MPIDense,
105697304618SKris Buschelman                                 /*  4*/ MatMultAdd_MPIDense,
10577c922b88SBarry Smith                                         MatMultTranspose_MPIDense,
10587c922b88SBarry Smith                                         MatMultTransposeAdd_MPIDense,
10598965ea79SLois Curfman McInnes                                         0,
106009dc0095SBarry Smith                                         0,
106109dc0095SBarry Smith                                         0,
106297304618SKris Buschelman                                 /* 10*/ 0,
106309dc0095SBarry Smith                                         0,
106409dc0095SBarry Smith                                         0,
106509dc0095SBarry Smith                                         0,
106609dc0095SBarry Smith                                         MatTranspose_MPIDense,
106797304618SKris Buschelman                                 /* 15*/ MatGetInfo_MPIDense,
10686e4ee0c6SHong Zhang                                         MatEqual_MPIDense,
106909dc0095SBarry Smith                                         MatGetDiagonal_MPIDense,
10705b2fa520SLois Curfman McInnes                                         MatDiagonalScale_MPIDense,
107109dc0095SBarry Smith                                         MatNorm_MPIDense,
107297304618SKris Buschelman                                 /* 20*/ MatAssemblyBegin_MPIDense,
107309dc0095SBarry Smith                                         MatAssemblyEnd_MPIDense,
107409dc0095SBarry Smith                                         MatSetOption_MPIDense,
107509dc0095SBarry Smith                                         MatZeroEntries_MPIDense,
1076d519adbfSMatthew Knepley                                 /* 24*/ MatZeroRows_MPIDense,
1077919b68f7SBarry Smith                                         0,
107801b82886SBarry Smith                                         0,
107901b82886SBarry Smith                                         0,
108001b82886SBarry Smith                                         0,
10814994cf47SJed Brown                                 /* 29*/ MatSetUp_MPIDense,
1082273d9f13SBarry Smith                                         0,
108309dc0095SBarry Smith                                         0,
1084c56a70eeSBarry Smith                                         MatGetDiagonalBlock_MPIDense,
10858c778c55SBarry Smith                                         0,
1086d519adbfSMatthew Knepley                                 /* 34*/ MatDuplicate_MPIDense,
108709dc0095SBarry Smith                                         0,
108809dc0095SBarry Smith                                         0,
108909dc0095SBarry Smith                                         0,
109009dc0095SBarry Smith                                         0,
1091d519adbfSMatthew Knepley                                 /* 39*/ MatAXPY_MPIDense,
10927dae84e0SHong Zhang                                         MatCreateSubMatrices_MPIDense,
109309dc0095SBarry Smith                                         0,
109409dc0095SBarry Smith                                         MatGetValues_MPIDense,
109509dc0095SBarry Smith                                         0,
1096d519adbfSMatthew Knepley                                 /* 44*/ 0,
109709dc0095SBarry Smith                                         MatScale_MPIDense,
10987d68702bSBarry Smith                                         MatShift_Basic,
109909dc0095SBarry Smith                                         0,
110009dc0095SBarry Smith                                         0,
110173a71a0fSBarry Smith                                 /* 49*/ MatSetRandom_MPIDense,
110209dc0095SBarry Smith                                         0,
110309dc0095SBarry Smith                                         0,
110409dc0095SBarry Smith                                         0,
110509dc0095SBarry Smith                                         0,
1106d519adbfSMatthew Knepley                                 /* 54*/ 0,
110709dc0095SBarry Smith                                         0,
110809dc0095SBarry Smith                                         0,
110909dc0095SBarry Smith                                         0,
111009dc0095SBarry Smith                                         0,
11117dae84e0SHong Zhang                                 /* 59*/ MatCreateSubMatrix_MPIDense,
1112b9b97703SBarry Smith                                         MatDestroy_MPIDense,
1113b9b97703SBarry Smith                                         MatView_MPIDense,
1114357abbc8SBarry Smith                                         0,
111597304618SKris Buschelman                                         0,
1116d519adbfSMatthew Knepley                                 /* 64*/ 0,
111797304618SKris Buschelman                                         0,
111897304618SKris Buschelman                                         0,
111997304618SKris Buschelman                                         0,
112097304618SKris Buschelman                                         0,
1121d519adbfSMatthew Knepley                                 /* 69*/ 0,
112297304618SKris Buschelman                                         0,
112397304618SKris Buschelman                                         0,
112497304618SKris Buschelman                                         0,
112597304618SKris Buschelman                                         0,
1126d519adbfSMatthew Knepley                                 /* 74*/ 0,
112797304618SKris Buschelman                                         0,
112897304618SKris Buschelman                                         0,
112997304618SKris Buschelman                                         0,
113097304618SKris Buschelman                                         0,
1131d519adbfSMatthew Knepley                                 /* 79*/ 0,
113297304618SKris Buschelman                                         0,
113397304618SKris Buschelman                                         0,
113497304618SKris Buschelman                                         0,
11355bba2384SShri Abhyankar                                 /* 83*/ MatLoad_MPIDense,
1136865e5f61SKris Buschelman                                         0,
1137865e5f61SKris Buschelman                                         0,
1138865e5f61SKris Buschelman                                         0,
1139865e5f61SKris Buschelman                                         0,
1140865e5f61SKris Buschelman                                         0,
11419775878aSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
11424222ddf1SHong Zhang                                 /* 89*/ 0,
11434222ddf1SHong Zhang                                         0,
11449775878aSHong Zhang #else
11459775878aSHong Zhang                                 /* 89*/ 0,
1146865e5f61SKris Buschelman                                         0,
11479775878aSHong Zhang #endif
1148fd4e9aacSBarry Smith                                         MatMatMultNumeric_MPIDense,
11492fbe02b9SBarry Smith                                         0,
1150ba337c44SJed Brown                                         0,
1151d519adbfSMatthew Knepley                                 /* 94*/ 0,
11524222ddf1SHong Zhang                                         0,
11534222ddf1SHong Zhang                                         0,
1154cc48ffa7SToby Isaac                                         MatMatTransposeMultNumeric_MPIDense_MPIDense,
1155ba337c44SJed Brown                                         0,
11564222ddf1SHong Zhang                                 /* 99*/ MatProductSetFromOptions_MPIDense,
1157ba337c44SJed Brown                                         0,
1158ba337c44SJed Brown                                         0,
1159ba337c44SJed Brown                                         MatConjugate_MPIDense,
1160ba337c44SJed Brown                                         0,
1161ba337c44SJed Brown                                 /*104*/ 0,
1162ba337c44SJed Brown                                         MatRealPart_MPIDense,
1163ba337c44SJed Brown                                         MatImaginaryPart_MPIDense,
116486d161a7SShri Abhyankar                                         0,
116586d161a7SShri Abhyankar                                         0,
116686d161a7SShri Abhyankar                                 /*109*/ 0,
116786d161a7SShri Abhyankar                                         0,
116886d161a7SShri Abhyankar                                         0,
116949a6ff4bSBarry Smith                                         MatGetColumnVector_MPIDense,
11703b49f96aSBarry Smith                                         MatMissingDiagonal_MPIDense,
117186d161a7SShri Abhyankar                                 /*114*/ 0,
117286d161a7SShri Abhyankar                                         0,
117386d161a7SShri Abhyankar                                         0,
117486d161a7SShri Abhyankar                                         0,
117586d161a7SShri Abhyankar                                         0,
117686d161a7SShri Abhyankar                                 /*119*/ 0,
117786d161a7SShri Abhyankar                                         0,
117886d161a7SShri Abhyankar                                         0,
11790716a85fSBarry Smith                                         0,
11800716a85fSBarry Smith                                         0,
11810716a85fSBarry Smith                                 /*124*/ 0,
11823964eb88SJed Brown                                         MatGetColumnNorms_MPIDense,
11833964eb88SJed Brown                                         0,
11843964eb88SJed Brown                                         0,
11853964eb88SJed Brown                                         0,
11863964eb88SJed Brown                                 /*129*/ 0,
11874222ddf1SHong Zhang                                         0,
11884222ddf1SHong Zhang                                         0,
1189cb20be35SHong Zhang                                         MatTransposeMatMultNumeric_MPIDense_MPIDense,
11903964eb88SJed Brown                                         0,
11913964eb88SJed Brown                                 /*134*/ 0,
11923964eb88SJed Brown                                         0,
11933964eb88SJed Brown                                         0,
11943964eb88SJed Brown                                         0,
11953964eb88SJed Brown                                         0,
11963964eb88SJed Brown                                 /*139*/ 0,
1197f9426fe0SMark Adams                                         0,
119894e2cb23SJakub Kruzik                                         0,
119994e2cb23SJakub Kruzik                                         0,
120094e2cb23SJakub Kruzik                                         0,
12014222ddf1SHong Zhang                                         MatCreateMPIMatConcatenateSeqMat_MPIDense,
12024222ddf1SHong Zhang                                 /*145*/ 0,
12034222ddf1SHong Zhang                                         0,
12044222ddf1SHong Zhang                                         0
1205ba337c44SJed Brown };
12068965ea79SLois Curfman McInnes 
12077087cfbeSBarry Smith PetscErrorCode  MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data)
1208a23d5eceSKris Buschelman {
1209a23d5eceSKris Buschelman   Mat_MPIDense   *a;
1210dfbe8321SBarry Smith   PetscErrorCode ierr;
1211a23d5eceSKris Buschelman 
1212a23d5eceSKris Buschelman   PetscFunctionBegin;
1213430ada49SBarry Smith   if (mat->preallocated) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Matrix has already been preallocated");
1214a23d5eceSKris Buschelman   mat->preallocated = PETSC_TRUE;
1215a23d5eceSKris Buschelman   /* Note:  For now, when data is specified above, this assumes the user correctly
1216a23d5eceSKris Buschelman    allocates the local dense storage space.  We should add error checking. */
1217a23d5eceSKris Buschelman 
1218a23d5eceSKris Buschelman   a       = (Mat_MPIDense*)mat->data;
121934ef9618SShri Abhyankar   ierr    = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr);
122034ef9618SShri Abhyankar   ierr    = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr);
122134ef9618SShri Abhyankar   a->nvec = mat->cmap->n;
122234ef9618SShri Abhyankar 
1223f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr);
1224d0f46423SBarry Smith   ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr);
12255c5985e7SKris Buschelman   ierr = MatSetType(a->A,MATSEQDENSE);CHKERRQ(ierr);
12265c5985e7SKris Buschelman   ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr);
12273bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
1228a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1229a23d5eceSKris Buschelman }
1230a23d5eceSKris Buschelman 
123165b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
1232cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat)
12338baccfbdSHong Zhang {
12348ea901baSHong Zhang   Mat            mat_elemental;
12358ea901baSHong Zhang   PetscErrorCode ierr;
123632d7a744SHong Zhang   PetscScalar    *v;
123732d7a744SHong Zhang   PetscInt       m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols;
12388ea901baSHong Zhang 
12398baccfbdSHong Zhang   PetscFunctionBegin;
1240378336b6SHong Zhang   if (reuse == MAT_REUSE_MATRIX) {
1241378336b6SHong Zhang     mat_elemental = *newmat;
1242378336b6SHong Zhang     ierr = MatZeroEntries(*newmat);CHKERRQ(ierr);
1243378336b6SHong Zhang   } else {
1244378336b6SHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr);
1245378336b6SHong Zhang     ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
1246378336b6SHong Zhang     ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr);
1247378336b6SHong Zhang     ierr = MatSetUp(mat_elemental);CHKERRQ(ierr);
124832d7a744SHong Zhang     ierr = MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
1249378336b6SHong Zhang   }
1250378336b6SHong Zhang 
125132d7a744SHong Zhang   ierr = PetscMalloc2(m,&rows,N,&cols);CHKERRQ(ierr);
125232d7a744SHong Zhang   for (i=0; i<N; i++) cols[i] = i;
125332d7a744SHong Zhang   for (i=0; i<m; i++) rows[i] = rstart + i;
12548ea901baSHong Zhang 
12558ea901baSHong Zhang   /* PETSc-Elemental interaface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */
125632d7a744SHong Zhang   ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
125732d7a744SHong Zhang   ierr = MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES);CHKERRQ(ierr);
12588ea901baSHong Zhang   ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
12598ea901baSHong Zhang   ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
126032d7a744SHong Zhang   ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
126132d7a744SHong Zhang   ierr = PetscFree2(rows,cols);CHKERRQ(ierr);
12628ea901baSHong Zhang 
1263511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
126428be2f97SBarry Smith     ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr);
12658ea901baSHong Zhang   } else {
12668ea901baSHong Zhang     *newmat = mat_elemental;
12678ea901baSHong Zhang   }
12688baccfbdSHong Zhang   PetscFunctionReturn(0);
12698baccfbdSHong Zhang }
127065b80a83SHong Zhang #endif
12718baccfbdSHong Zhang 
1272af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A,PetscInt col,PetscScalar **vals)
127386aefd0dSHong Zhang {
127486aefd0dSHong Zhang   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
127586aefd0dSHong Zhang   PetscErrorCode ierr;
127686aefd0dSHong Zhang 
127786aefd0dSHong Zhang   PetscFunctionBegin;
127886aefd0dSHong Zhang   ierr = MatDenseGetColumn(mat->A,col,vals);CHKERRQ(ierr);
127986aefd0dSHong Zhang   PetscFunctionReturn(0);
128086aefd0dSHong Zhang }
128186aefd0dSHong Zhang 
1282af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A,PetscScalar **vals)
128386aefd0dSHong Zhang {
128486aefd0dSHong Zhang   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
128586aefd0dSHong Zhang   PetscErrorCode ierr;
128686aefd0dSHong Zhang 
128786aefd0dSHong Zhang   PetscFunctionBegin;
128886aefd0dSHong Zhang   ierr = MatDenseRestoreColumn(mat->A,vals);CHKERRQ(ierr);
128986aefd0dSHong Zhang   PetscFunctionReturn(0);
129086aefd0dSHong Zhang }
129186aefd0dSHong Zhang 
129294e2cb23SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
129394e2cb23SJakub Kruzik {
129494e2cb23SJakub Kruzik   PetscErrorCode ierr;
129594e2cb23SJakub Kruzik   Mat_MPIDense   *mat;
129694e2cb23SJakub Kruzik   PetscInt       m,nloc,N;
129794e2cb23SJakub Kruzik 
129894e2cb23SJakub Kruzik   PetscFunctionBegin;
129994e2cb23SJakub Kruzik   ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr);
130094e2cb23SJakub Kruzik   ierr = MatGetLocalSize(inmat,NULL,&nloc);CHKERRQ(ierr);
130194e2cb23SJakub Kruzik   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
130294e2cb23SJakub Kruzik     PetscInt sum;
130394e2cb23SJakub Kruzik 
130494e2cb23SJakub Kruzik     if (n == PETSC_DECIDE) {
130594e2cb23SJakub Kruzik       ierr = PetscSplitOwnership(comm,&n,&N);CHKERRQ(ierr);
130694e2cb23SJakub Kruzik     }
130794e2cb23SJakub Kruzik     /* Check sum(n) = N */
130894e2cb23SJakub Kruzik     ierr = MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
130994e2cb23SJakub Kruzik     if (sum != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns %D != global columns %D",sum,N);
131094e2cb23SJakub Kruzik 
131194e2cb23SJakub Kruzik     ierr = MatCreateDense(comm,m,n,PETSC_DETERMINE,N,NULL,outmat);CHKERRQ(ierr);
131294e2cb23SJakub Kruzik   }
131394e2cb23SJakub Kruzik 
131494e2cb23SJakub Kruzik   /* numeric phase */
131594e2cb23SJakub Kruzik   mat = (Mat_MPIDense*)(*outmat)->data;
131694e2cb23SJakub Kruzik   ierr = MatCopy(inmat,mat->A,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
131794e2cb23SJakub Kruzik   ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
131894e2cb23SJakub Kruzik   ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
131994e2cb23SJakub Kruzik   PetscFunctionReturn(0);
132094e2cb23SJakub Kruzik }
132194e2cb23SJakub Kruzik 
13228cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat)
1323273d9f13SBarry Smith {
1324273d9f13SBarry Smith   Mat_MPIDense   *a;
1325dfbe8321SBarry Smith   PetscErrorCode ierr;
1326273d9f13SBarry Smith 
1327273d9f13SBarry Smith   PetscFunctionBegin;
1328b00a9115SJed Brown   ierr      = PetscNewLog(mat,&a);CHKERRQ(ierr);
1329b0a32e0cSBarry Smith   mat->data = (void*)a;
1330273d9f13SBarry Smith   ierr      = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1331273d9f13SBarry Smith 
1332273d9f13SBarry Smith   mat->insertmode = NOT_SET_VALUES;
1333ce94432eSBarry Smith   ierr            = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&a->rank);CHKERRQ(ierr);
1334ce94432eSBarry Smith   ierr            = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&a->size);CHKERRQ(ierr);
1335273d9f13SBarry Smith 
1336273d9f13SBarry Smith   /* build cache for off array entries formed */
1337273d9f13SBarry Smith   a->donotstash = PETSC_FALSE;
13382205254eSKarl Rupp 
1339ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash);CHKERRQ(ierr);
1340273d9f13SBarry Smith 
1341273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
1342273d9f13SBarry Smith   a->lvec        = 0;
1343273d9f13SBarry Smith   a->Mvctx       = 0;
1344273d9f13SBarry Smith   a->roworiented = PETSC_TRUE;
1345273d9f13SBarry Smith 
134649a6ff4bSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",MatDenseGetLDA_MPIDense);CHKERRQ(ierr);
1347bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense);CHKERRQ(ierr);
13488572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense);CHKERRQ(ierr);
13498572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",MatDenseGetArrayRead_MPIDense);CHKERRQ(ierr);
13508572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",MatDenseRestoreArrayRead_MPIDense);CHKERRQ(ierr);
1351d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",MatDensePlaceArray_MPIDense);CHKERRQ(ierr);
1352d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",MatDenseResetArray_MPIDense);CHKERRQ(ierr);
13538baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
13548baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental);CHKERRQ(ierr);
13558baccfbdSHong Zhang #endif
1356bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr);
13574222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr);
13584222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr);
1359bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr);
1360bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr);
136152c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_nest_mpidense_C",MatMatMultSymbolic_Nest_Dense);CHKERRQ(ierr);
136252c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_nest_mpidense_C",MatMatMultNumeric_Nest_Dense);CHKERRQ(ierr);
13638949adfdSHong Zhang 
13648949adfdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",MatTransposeMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr);
13658949adfdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",MatTransposeMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr);
1366af53bab2SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",MatDenseGetColumn_MPIDense);CHKERRQ(ierr);
1367af53bab2SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_MPIDense);CHKERRQ(ierr);
136838aed534SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr);
1369273d9f13SBarry Smith   PetscFunctionReturn(0);
1370273d9f13SBarry Smith }
1371273d9f13SBarry Smith 
1372209238afSKris Buschelman /*MC
1373002d173eSKris Buschelman    MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices.
1374209238afSKris Buschelman 
1375209238afSKris Buschelman    This matrix type is identical to MATSEQDENSE when constructed with a single process communicator,
1376209238afSKris Buschelman    and MATMPIDENSE otherwise.
1377209238afSKris Buschelman 
1378209238afSKris Buschelman    Options Database Keys:
1379209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions()
1380209238afSKris Buschelman 
1381209238afSKris Buschelman   Level: beginner
1382209238afSKris Buschelman 
138301b82886SBarry Smith 
138452c5f739Sprj- .seealso: MATSEQDENSE,MATMPIDENSE
1385209238afSKris Buschelman M*/
1386209238afSKris Buschelman 
1387273d9f13SBarry Smith /*@C
1388273d9f13SBarry Smith    MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries
1389273d9f13SBarry Smith 
1390*8f490ea3SStefano Zampini    Collective
1391273d9f13SBarry Smith 
1392273d9f13SBarry Smith    Input Parameters:
13931c4f3114SJed Brown .  B - the matrix
13940298fd71SBarry Smith -  data - optional location of matrix data.  Set data=NULL for PETSc
1395273d9f13SBarry Smith    to control all matrix memory allocation.
1396273d9f13SBarry Smith 
1397273d9f13SBarry Smith    Notes:
1398273d9f13SBarry Smith    The dense format is fully compatible with standard Fortran 77
1399273d9f13SBarry Smith    storage by columns.
1400273d9f13SBarry Smith 
1401273d9f13SBarry Smith    The data input variable is intended primarily for Fortran programmers
1402273d9f13SBarry Smith    who wish to allocate their own matrix memory space.  Most users should
14030298fd71SBarry Smith    set data=NULL.
1404273d9f13SBarry Smith 
1405273d9f13SBarry Smith    Level: intermediate
1406273d9f13SBarry Smith 
1407273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues()
1408273d9f13SBarry Smith @*/
14091c4f3114SJed Brown PetscErrorCode  MatMPIDenseSetPreallocation(Mat B,PetscScalar *data)
1410273d9f13SBarry Smith {
14114ac538c5SBarry Smith   PetscErrorCode ierr;
1412273d9f13SBarry Smith 
1413273d9f13SBarry Smith   PetscFunctionBegin;
14141c4f3114SJed Brown   ierr = PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data));CHKERRQ(ierr);
1415273d9f13SBarry Smith   PetscFunctionReturn(0);
1416273d9f13SBarry Smith }
1417273d9f13SBarry Smith 
1418d3042a70SBarry Smith /*@
1419d3042a70SBarry Smith    MatDensePlaceArray - Allows one to replace the array in a dense array with an
1420d3042a70SBarry Smith    array provided by the user. This is useful to avoid copying an array
1421d3042a70SBarry Smith    into a matrix
1422d3042a70SBarry Smith 
1423d3042a70SBarry Smith    Not Collective
1424d3042a70SBarry Smith 
1425d3042a70SBarry Smith    Input Parameters:
1426d3042a70SBarry Smith +  mat - the matrix
1427d3042a70SBarry Smith -  array - the array in column major order
1428d3042a70SBarry Smith 
1429d3042a70SBarry Smith    Notes:
1430d3042a70SBarry Smith    You can return to the original array with a call to MatDenseResetArray(). The user is responsible for freeing this array; it will not be
1431d3042a70SBarry Smith    freed when the matrix is destroyed.
1432d3042a70SBarry Smith 
1433d3042a70SBarry Smith    Level: developer
1434d3042a70SBarry Smith 
1435d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDenseResetArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray()
1436d3042a70SBarry Smith 
1437d3042a70SBarry Smith @*/
1438d3042a70SBarry Smith PetscErrorCode  MatDensePlaceArray(Mat mat,const PetscScalar array[])
1439d3042a70SBarry Smith {
1440d3042a70SBarry Smith   PetscErrorCode ierr;
1441d3042a70SBarry Smith   PetscFunctionBegin;
1442d3042a70SBarry Smith   ierr = PetscUseMethod(mat,"MatDensePlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr);
1443d3042a70SBarry Smith   ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr);
1444d3042a70SBarry Smith   PetscFunctionReturn(0);
1445d3042a70SBarry Smith }
1446d3042a70SBarry Smith 
1447d3042a70SBarry Smith /*@
1448d3042a70SBarry Smith    MatDenseResetArray - Resets the matrix array to that it previously had before the call to MatDensePlaceArray()
1449d3042a70SBarry Smith 
1450d3042a70SBarry Smith    Not Collective
1451d3042a70SBarry Smith 
1452d3042a70SBarry Smith    Input Parameters:
1453d3042a70SBarry Smith .  mat - the matrix
1454d3042a70SBarry Smith 
1455d3042a70SBarry Smith    Notes:
1456d3042a70SBarry Smith    You can only call this after a call to MatDensePlaceArray()
1457d3042a70SBarry Smith 
1458d3042a70SBarry Smith    Level: developer
1459d3042a70SBarry Smith 
1460d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDensePlaceArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray()
1461d3042a70SBarry Smith 
1462d3042a70SBarry Smith @*/
1463d3042a70SBarry Smith PetscErrorCode  MatDenseResetArray(Mat mat)
1464d3042a70SBarry Smith {
1465d3042a70SBarry Smith   PetscErrorCode ierr;
1466d3042a70SBarry Smith   PetscFunctionBegin;
1467d3042a70SBarry Smith   ierr = PetscUseMethod(mat,"MatDenseResetArray_C",(Mat),(mat));CHKERRQ(ierr);
1468d3042a70SBarry Smith   ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr);
1469d3042a70SBarry Smith   PetscFunctionReturn(0);
1470d3042a70SBarry Smith }
1471d3042a70SBarry Smith 
14728965ea79SLois Curfman McInnes /*@C
147369b1f4b7SBarry Smith    MatCreateDense - Creates a parallel matrix in dense format.
14748965ea79SLois Curfman McInnes 
1475d083f849SBarry Smith    Collective
1476db81eaa0SLois Curfman McInnes 
14778965ea79SLois Curfman McInnes    Input Parameters:
1478db81eaa0SLois Curfman McInnes +  comm - MPI communicator
14798965ea79SLois Curfman McInnes .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1480db81eaa0SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
14818965ea79SLois Curfman McInnes .  M - number of global rows (or PETSC_DECIDE to have calculated if m is given)
1482db81eaa0SLois Curfman McInnes .  N - number of global columns (or PETSC_DECIDE to have calculated if n is given)
14836cfe35ddSJose E. Roman -  data - optional location of matrix data.  Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc
1484dfc5480cSLois Curfman McInnes    to control all matrix memory allocation.
14858965ea79SLois Curfman McInnes 
14868965ea79SLois Curfman McInnes    Output Parameter:
1487477f1c0bSLois Curfman McInnes .  A - the matrix
14888965ea79SLois Curfman McInnes 
1489b259b22eSLois Curfman McInnes    Notes:
149039ddd567SLois Curfman McInnes    The dense format is fully compatible with standard Fortran 77
149139ddd567SLois Curfman McInnes    storage by columns.
14928965ea79SLois Curfman McInnes 
149318f449edSLois Curfman McInnes    The data input variable is intended primarily for Fortran programmers
149418f449edSLois Curfman McInnes    who wish to allocate their own matrix memory space.  Most users should
14956cfe35ddSJose E. Roman    set data=NULL (PETSC_NULL_SCALAR for Fortran users).
149618f449edSLois Curfman McInnes 
14978965ea79SLois Curfman McInnes    The user MUST specify either the local or global matrix dimensions
14988965ea79SLois Curfman McInnes    (possibly both).
14998965ea79SLois Curfman McInnes 
1500027ccd11SLois Curfman McInnes    Level: intermediate
1501027ccd11SLois Curfman McInnes 
150239ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues()
15038965ea79SLois Curfman McInnes @*/
150469b1f4b7SBarry Smith PetscErrorCode  MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A)
15058965ea79SLois Curfman McInnes {
15066849ba73SBarry Smith   PetscErrorCode ierr;
150713f74950SBarry Smith   PetscMPIInt    size;
15088965ea79SLois Curfman McInnes 
15093a40ed3dSBarry Smith   PetscFunctionBegin;
1510f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
1511f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
1512273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1513273d9f13SBarry Smith   if (size > 1) {
1514*8f490ea3SStefano Zampini     PetscBool havedata = (PetscBool)!!data;
1515*8f490ea3SStefano Zampini 
1516273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr);
1517273d9f13SBarry Smith     ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr);
1518*8f490ea3SStefano Zampini     ierr = MPIU_Allreduce(MPI_IN_PLACE,&havedata,1,MPIU_BOOL,MPI_LOR,comm);CHKERRQ(ierr);
1519*8f490ea3SStefano Zampini     if (havedata) {  /* user provided data array, so no need to assemble */
15206cfe35ddSJose E. Roman       ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr);
15216cfe35ddSJose E. Roman       (*A)->assembled = PETSC_TRUE;
15226cfe35ddSJose E. Roman     }
1523273d9f13SBarry Smith   } else {
1524273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr);
1525273d9f13SBarry Smith     ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr);
15268c469469SLois Curfman McInnes   }
15273a40ed3dSBarry Smith   PetscFunctionReturn(0);
15288965ea79SLois Curfman McInnes }
15298965ea79SLois Curfman McInnes 
15306849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat)
15318965ea79SLois Curfman McInnes {
15328965ea79SLois Curfman McInnes   Mat            mat;
15333501a2bdSLois Curfman McInnes   Mat_MPIDense   *a,*oldmat = (Mat_MPIDense*)A->data;
1534dfbe8321SBarry Smith   PetscErrorCode ierr;
15358965ea79SLois Curfman McInnes 
15363a40ed3dSBarry Smith   PetscFunctionBegin;
15378965ea79SLois Curfman McInnes   *newmat = 0;
1538ce94432eSBarry Smith   ierr    = MatCreate(PetscObjectComm((PetscObject)A),&mat);CHKERRQ(ierr);
1539d0f46423SBarry Smith   ierr    = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
15407adad957SLisandro Dalcin   ierr    = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr);
1541834f8fabSBarry Smith   a       = (Mat_MPIDense*)mat->data;
15425aa7edbeSHong Zhang 
1543d5f3da31SBarry Smith   mat->factortype   = A->factortype;
1544c456f294SBarry Smith   mat->assembled    = PETSC_TRUE;
1545273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
15468965ea79SLois Curfman McInnes 
15478965ea79SLois Curfman McInnes   a->size         = oldmat->size;
15488965ea79SLois Curfman McInnes   a->rank         = oldmat->rank;
1549e0fa3b82SLois Curfman McInnes   mat->insertmode = NOT_SET_VALUES;
1550b9b97703SBarry Smith   a->nvec         = oldmat->nvec;
15513782ba37SSatish Balay   a->donotstash   = oldmat->donotstash;
1552e04c1aa4SHong Zhang 
15531e1e43feSBarry Smith   ierr = PetscLayoutReference(A->rmap,&mat->rmap);CHKERRQ(ierr);
15541e1e43feSBarry Smith   ierr = PetscLayoutReference(A->cmap,&mat->cmap);CHKERRQ(ierr);
15558965ea79SLois Curfman McInnes 
1556329f5518SBarry Smith   ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr);
15575609ef8eSBarry Smith   ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
15583bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
155901b82886SBarry Smith 
15608965ea79SLois Curfman McInnes   *newmat = mat;
15613a40ed3dSBarry Smith   PetscFunctionReturn(0);
15628965ea79SLois Curfman McInnes }
15638965ea79SLois Curfman McInnes 
1564eb91f321SVaclav Hapla PetscErrorCode MatLoad_MPIDense(Mat newMat, PetscViewer viewer)
1565eb91f321SVaclav Hapla {
1566eb91f321SVaclav Hapla   PetscErrorCode ierr;
156787d5ce66SSatish Balay   PetscBool      isbinary;
156887d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5)
156987d5ce66SSatish Balay   PetscBool      ishdf5;
157087d5ce66SSatish Balay #endif
1571eb91f321SVaclav Hapla 
1572eb91f321SVaclav Hapla   PetscFunctionBegin;
1573eb91f321SVaclav Hapla   PetscValidHeaderSpecific(newMat,MAT_CLASSID,1);
1574eb91f321SVaclav Hapla   PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2);
1575eb91f321SVaclav Hapla   /* force binary viewer to load .info file if it has not yet done so */
1576eb91f321SVaclav Hapla   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
1577eb91f321SVaclav Hapla   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
157887d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5)
1579eb91f321SVaclav Hapla   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5,  &ishdf5);CHKERRQ(ierr);
158087d5ce66SSatish Balay #endif
1581eb91f321SVaclav Hapla   if (isbinary) {
15828491ab44SLisandro Dalcin     ierr = MatLoad_Dense_Binary(newMat,viewer);CHKERRQ(ierr);
1583eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5)
158487d5ce66SSatish Balay   } else if (ishdf5) {
1585eb91f321SVaclav Hapla     ierr = MatLoad_Dense_HDF5(newMat,viewer);CHKERRQ(ierr);
1586eb91f321SVaclav Hapla #endif
158787d5ce66SSatish Balay   } else SETERRQ2(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newMat)->type_name);
1588eb91f321SVaclav Hapla   PetscFunctionReturn(0);
1589eb91f321SVaclav Hapla }
1590eb91f321SVaclav Hapla 
1591ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool  *flag)
15926e4ee0c6SHong Zhang {
15936e4ee0c6SHong Zhang   Mat_MPIDense   *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data;
15946e4ee0c6SHong Zhang   Mat            a,b;
1595ace3abfcSBarry Smith   PetscBool      flg;
15966e4ee0c6SHong Zhang   PetscErrorCode ierr;
159790ace30eSBarry Smith 
15986e4ee0c6SHong Zhang   PetscFunctionBegin;
15996e4ee0c6SHong Zhang   a    = matA->A;
16006e4ee0c6SHong Zhang   b    = matB->A;
16016e4ee0c6SHong Zhang   ierr = MatEqual(a,b,&flg);CHKERRQ(ierr);
1602b2566f29SBarry Smith   ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
16036e4ee0c6SHong Zhang   PetscFunctionReturn(0);
16046e4ee0c6SHong Zhang }
160590ace30eSBarry Smith 
1606baa3c1c6SHong Zhang PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(Mat A)
1607baa3c1c6SHong Zhang {
1608baa3c1c6SHong Zhang   PetscErrorCode        ierr;
1609baa3c1c6SHong Zhang   Mat_MPIDense          *a = (Mat_MPIDense*)A->data;
1610baa3c1c6SHong Zhang   Mat_TransMatMultDense *atb = a->atbdense;
1611baa3c1c6SHong Zhang 
1612baa3c1c6SHong Zhang   PetscFunctionBegin;
1613c5ef1628SHong Zhang   ierr = PetscFree3(atb->sendbuf,atb->atbarray,atb->recvcounts);CHKERRQ(ierr);
1614baa3c1c6SHong Zhang   ierr = (atb->destroy)(A);CHKERRQ(ierr);
1615baa3c1c6SHong Zhang   ierr = PetscFree(atb);CHKERRQ(ierr);
1616baa3c1c6SHong Zhang   PetscFunctionReturn(0);
1617baa3c1c6SHong Zhang }
1618baa3c1c6SHong Zhang 
1619cc48ffa7SToby Isaac PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(Mat A)
1620cc48ffa7SToby Isaac {
1621cc48ffa7SToby Isaac   PetscErrorCode        ierr;
1622cc48ffa7SToby Isaac   Mat_MPIDense          *a = (Mat_MPIDense*)A->data;
1623cc48ffa7SToby Isaac   Mat_MatTransMultDense *abt = a->abtdense;
1624cc48ffa7SToby Isaac 
1625cc48ffa7SToby Isaac   PetscFunctionBegin;
1626cc48ffa7SToby Isaac   ierr = PetscFree2(abt->buf[0],abt->buf[1]);CHKERRQ(ierr);
1627faa55883SToby Isaac   ierr = PetscFree2(abt->recvcounts,abt->recvdispls);CHKERRQ(ierr);
1628cc48ffa7SToby Isaac   ierr = (abt->destroy)(A);CHKERRQ(ierr);
1629cc48ffa7SToby Isaac   ierr = PetscFree(abt);CHKERRQ(ierr);
1630cc48ffa7SToby Isaac   PetscFunctionReturn(0);
1631cc48ffa7SToby Isaac }
1632cc48ffa7SToby Isaac 
1633cb20be35SHong Zhang PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C)
1634cb20be35SHong Zhang {
1635baa3c1c6SHong Zhang   Mat_MPIDense   *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data;
1636660d5466SHong Zhang   Mat_SeqDense   *aseq=(Mat_SeqDense*)(a->A)->data, *bseq=(Mat_SeqDense*)(b->A)->data;
1637baa3c1c6SHong Zhang   Mat_TransMatMultDense *atb = c->atbdense;
1638cb20be35SHong Zhang   PetscErrorCode ierr;
1639cb20be35SHong Zhang   MPI_Comm       comm;
1640d5017740SHong Zhang   PetscMPIInt    rank,size,*recvcounts=atb->recvcounts;
1641c5ef1628SHong Zhang   PetscScalar    *carray,*atbarray=atb->atbarray,*sendbuf=atb->sendbuf;
1642d5017740SHong Zhang   PetscInt       i,cN=C->cmap->N,cM=C->rmap->N,proc,k,j;
1643660d5466SHong Zhang   PetscScalar    _DOne=1.0,_DZero=0.0;
1644adc7a786SHong Zhang   PetscBLASInt   am,an,bn,aN;
1645e68c0b26SHong Zhang   const PetscInt *ranges;
1646cb20be35SHong Zhang 
1647cb20be35SHong Zhang   PetscFunctionBegin;
1648cb20be35SHong Zhang   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
1649cb20be35SHong Zhang   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
1650cb20be35SHong Zhang   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1651e68c0b26SHong Zhang 
1652c5ef1628SHong Zhang   /* compute atbarray = aseq^T * bseq */
1653660d5466SHong Zhang   ierr = PetscBLASIntCast(a->A->cmap->n,&an);CHKERRQ(ierr);
1654660d5466SHong Zhang   ierr = PetscBLASIntCast(b->A->cmap->n,&bn);CHKERRQ(ierr);
1655660d5466SHong Zhang   ierr = PetscBLASIntCast(a->A->rmap->n,&am);CHKERRQ(ierr);
1656adc7a786SHong Zhang   ierr = PetscBLASIntCast(A->cmap->N,&aN);CHKERRQ(ierr);
1657adc7a786SHong Zhang   PetscStackCallBLAS("BLASgemm",BLASgemm_("T","N",&an,&bn,&am,&_DOne,aseq->v,&aseq->lda,bseq->v,&bseq->lda,&_DZero,atbarray,&aN));
1658cb20be35SHong Zhang 
1659cb20be35SHong Zhang   ierr = MatGetOwnershipRanges(C,&ranges);CHKERRQ(ierr);
1660c5ef1628SHong Zhang   for (i=0; i<size; i++) recvcounts[i] = (ranges[i+1] - ranges[i])*cN;
1661cb20be35SHong Zhang 
1662660d5466SHong Zhang   /* arrange atbarray into sendbuf */
1663cb20be35SHong Zhang   k = 0;
1664cb20be35SHong Zhang   for (proc=0; proc<size; proc++) {
1665baa3c1c6SHong Zhang     for (j=0; j<cN; j++) {
1666c5ef1628SHong Zhang       for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*cM];
1667cb20be35SHong Zhang     }
1668cb20be35SHong Zhang   }
1669c5ef1628SHong Zhang   /* sum all atbarray to local values of C */
1670660d5466SHong Zhang   ierr = MatDenseGetArray(c->A,&carray);CHKERRQ(ierr);
16713462b7efSHong Zhang   ierr = MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm);CHKERRQ(ierr);
1672660d5466SHong Zhang   ierr = MatDenseRestoreArray(c->A,&carray);CHKERRQ(ierr);
1673cb20be35SHong Zhang   PetscFunctionReturn(0);
1674cb20be35SHong Zhang }
1675cb20be35SHong Zhang 
16764222ddf1SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C)
1677cb20be35SHong Zhang {
1678cb20be35SHong Zhang   PetscErrorCode        ierr;
1679cb20be35SHong Zhang   MPI_Comm              comm;
1680baa3c1c6SHong Zhang   PetscMPIInt           size;
1681660d5466SHong Zhang   PetscInt              cm=A->cmap->n,cM,cN=B->cmap->N;
1682baa3c1c6SHong Zhang   Mat_MPIDense          *c;
1683baa3c1c6SHong Zhang   Mat_TransMatMultDense *atb;
1684cb20be35SHong Zhang 
1685cb20be35SHong Zhang   PetscFunctionBegin;
1686baa3c1c6SHong Zhang   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
1687cb20be35SHong Zhang   if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) {
1688cb20be35SHong Zhang     SETERRQ4(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend);
1689cb20be35SHong Zhang   }
1690cb20be35SHong Zhang 
16914222ddf1SHong Zhang   /* create matrix product C */
16924222ddf1SHong Zhang   ierr = MatSetSizes(C,cm,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
16934222ddf1SHong Zhang   ierr = MatSetType(C,MATMPIDENSE);CHKERRQ(ierr);
169418992e5dSStefano Zampini   ierr = MatSetUp(C);CHKERRQ(ierr);
16954222ddf1SHong Zhang   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
16964222ddf1SHong Zhang   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1697baa3c1c6SHong Zhang 
16984222ddf1SHong Zhang   /* create data structure for reuse C */
1699baa3c1c6SHong Zhang   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1700baa3c1c6SHong Zhang   ierr = PetscNew(&atb);CHKERRQ(ierr);
17014222ddf1SHong Zhang   cM = C->rmap->N;
1702c5ef1628SHong Zhang   ierr = PetscMalloc3(cM*cN,&atb->sendbuf,cM*cN,&atb->atbarray,size,&atb->recvcounts);CHKERRQ(ierr);
1703baa3c1c6SHong Zhang 
17044222ddf1SHong Zhang   c                    = (Mat_MPIDense*)C->data;
1705baa3c1c6SHong Zhang   c->atbdense          = atb;
17064222ddf1SHong Zhang   atb->destroy         = C->ops->destroy;
17074222ddf1SHong Zhang   C->ops->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense;
1708cb20be35SHong Zhang   PetscFunctionReturn(0);
1709cb20be35SHong Zhang }
1710cb20be35SHong Zhang 
17114222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C)
1712cb20be35SHong Zhang {
1713cb20be35SHong Zhang   PetscErrorCode        ierr;
1714cc48ffa7SToby Isaac   MPI_Comm              comm;
1715cc48ffa7SToby Isaac   PetscMPIInt           i, size;
1716cc48ffa7SToby Isaac   PetscInt              maxRows, bufsiz;
1717cc48ffa7SToby Isaac   Mat_MPIDense          *c;
1718cc48ffa7SToby Isaac   PetscMPIInt           tag;
17194222ddf1SHong Zhang   PetscInt              alg;
1720cc48ffa7SToby Isaac   Mat_MatTransMultDense *abt;
17214222ddf1SHong Zhang   Mat_Product           *product = C->product;
17224222ddf1SHong Zhang   PetscBool             flg;
1723cc48ffa7SToby Isaac 
1724cc48ffa7SToby Isaac   PetscFunctionBegin;
17254222ddf1SHong Zhang   /* check local size of A and B */
17264222ddf1SHong Zhang   if (A->cmap->n != B->cmap->n) {
17274222ddf1SHong Zhang     SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local column dimensions are incompatible, A (%D) != B (%D)",A->cmap->n,B->cmap->n);
1728cc48ffa7SToby Isaac   }
1729cc48ffa7SToby Isaac 
17304222ddf1SHong Zhang   ierr = PetscStrcmp(product->alg,"allgatherv",&flg);CHKERRQ(ierr);
17314222ddf1SHong Zhang   if (flg) {
17324222ddf1SHong Zhang     alg = 0;
17334222ddf1SHong Zhang   } else alg = 1;
1734cc48ffa7SToby Isaac 
17354222ddf1SHong Zhang   /* setup matrix product C */
17364222ddf1SHong Zhang   ierr = MatSetSizes(C,A->rmap->n,B->rmap->n,A->rmap->N,B->rmap->N);CHKERRQ(ierr);
17374222ddf1SHong Zhang   ierr = MatSetType(C,MATMPIDENSE);CHKERRQ(ierr);
173818992e5dSStefano Zampini   ierr = MatSetUp(C);CHKERRQ(ierr);
17394222ddf1SHong Zhang   ierr = PetscObjectGetNewTag((PetscObject)C, &tag);CHKERRQ(ierr);
17404222ddf1SHong Zhang   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
17414222ddf1SHong Zhang   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
17424222ddf1SHong Zhang 
17434222ddf1SHong Zhang   /* create data structure for reuse C */
17444222ddf1SHong Zhang   ierr = PetscObjectGetComm((PetscObject)C,&comm);CHKERRQ(ierr);
1745cc48ffa7SToby Isaac   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1746cc48ffa7SToby Isaac   ierr = PetscNew(&abt);CHKERRQ(ierr);
1747cc48ffa7SToby Isaac   abt->tag = tag;
1748faa55883SToby Isaac   abt->alg = alg;
1749faa55883SToby Isaac   switch (alg) {
17504222ddf1SHong Zhang   case 1: /* alg: "cyclic" */
1751cc48ffa7SToby Isaac     for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i]));
1752cc48ffa7SToby Isaac     bufsiz = A->cmap->N * maxRows;
1753cc48ffa7SToby Isaac     ierr = PetscMalloc2(bufsiz,&(abt->buf[0]),bufsiz,&(abt->buf[1]));CHKERRQ(ierr);
1754faa55883SToby Isaac     break;
17554222ddf1SHong Zhang   default: /* alg: "allgatherv" */
1756faa55883SToby Isaac     ierr = PetscMalloc2(B->rmap->n * B->cmap->N, &(abt->buf[0]), B->rmap->N * B->cmap->N, &(abt->buf[1]));CHKERRQ(ierr);
1757faa55883SToby Isaac     ierr = PetscMalloc2(size,&(abt->recvcounts),size+1,&(abt->recvdispls));CHKERRQ(ierr);
1758faa55883SToby Isaac     for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N;
1759faa55883SToby Isaac     for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i];
1760faa55883SToby Isaac     break;
1761faa55883SToby Isaac   }
1762cc48ffa7SToby Isaac 
17634222ddf1SHong Zhang   c                               = (Mat_MPIDense*)C->data;
1764cc48ffa7SToby Isaac   c->abtdense                     = abt;
17654222ddf1SHong Zhang   abt->destroy                    = C->ops->destroy;
17664222ddf1SHong Zhang   C->ops->destroy                 = MatDestroy_MatMatTransMult_MPIDense_MPIDense;
17674222ddf1SHong Zhang   C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_MPIDense_MPIDense;
1768cc48ffa7SToby Isaac   PetscFunctionReturn(0);
1769cc48ffa7SToby Isaac }
1770cc48ffa7SToby Isaac 
1771faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C)
1772cc48ffa7SToby Isaac {
1773cc48ffa7SToby Isaac   Mat_MPIDense   *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data;
1774cc48ffa7SToby Isaac   Mat_SeqDense   *aseq=(Mat_SeqDense*)(a->A)->data, *bseq=(Mat_SeqDense*)(b->A)->data;
1775cc48ffa7SToby Isaac   Mat_SeqDense   *cseq=(Mat_SeqDense*)(c->A)->data;
1776cc48ffa7SToby Isaac   Mat_MatTransMultDense *abt = c->abtdense;
1777cc48ffa7SToby Isaac   PetscErrorCode ierr;
1778cc48ffa7SToby Isaac   MPI_Comm       comm;
1779cc48ffa7SToby Isaac   PetscMPIInt    rank,size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom;
1780ce36caf3SSatish Balay   PetscScalar    *sendbuf, *recvbuf=0, *carray;
1781cc48ffa7SToby Isaac   PetscInt       i,cK=A->cmap->N,k,j,bn;
1782cc48ffa7SToby Isaac   PetscScalar    _DOne=1.0,_DZero=0.0;
1783cc48ffa7SToby Isaac   PetscBLASInt   cm, cn, ck;
1784cc48ffa7SToby Isaac   MPI_Request    reqs[2];
1785cc48ffa7SToby Isaac   const PetscInt *ranges;
1786cc48ffa7SToby Isaac 
1787cc48ffa7SToby Isaac   PetscFunctionBegin;
1788cc48ffa7SToby Isaac   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
1789cc48ffa7SToby Isaac   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
1790cc48ffa7SToby Isaac   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1791cc48ffa7SToby Isaac 
1792cc48ffa7SToby Isaac   ierr = MatGetOwnershipRanges(B,&ranges);CHKERRQ(ierr);
1793cc48ffa7SToby Isaac   bn = B->rmap->n;
1794cc48ffa7SToby Isaac   if (bseq->lda == bn) {
1795cc48ffa7SToby Isaac     sendbuf = bseq->v;
1796cc48ffa7SToby Isaac   } else {
1797cc48ffa7SToby Isaac     sendbuf = abt->buf[0];
1798cc48ffa7SToby Isaac     for (k = 0, i = 0; i < cK; i++) {
1799cc48ffa7SToby Isaac       for (j = 0; j < bn; j++, k++) {
1800cc48ffa7SToby Isaac         sendbuf[k] = bseq->v[i * bseq->lda + j];
1801cc48ffa7SToby Isaac       }
1802cc48ffa7SToby Isaac     }
1803cc48ffa7SToby Isaac   }
1804cc48ffa7SToby Isaac   if (size > 1) {
1805cc48ffa7SToby Isaac     sendto = (rank + size - 1) % size;
1806cc48ffa7SToby Isaac     recvfrom = (rank + size + 1) % size;
1807cc48ffa7SToby Isaac   } else {
1808cc48ffa7SToby Isaac     sendto = recvfrom = 0;
1809cc48ffa7SToby Isaac   }
1810cc48ffa7SToby Isaac   ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr);
1811cc48ffa7SToby Isaac   ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr);
1812cc48ffa7SToby Isaac   recvisfrom = rank;
1813cc48ffa7SToby Isaac   for (i = 0; i < size; i++) {
1814cc48ffa7SToby Isaac     /* we have finished receiving in sending, bufs can be read/modified */
1815cc48ffa7SToby Isaac     PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */
1816cc48ffa7SToby Isaac     PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom];
1817cc48ffa7SToby Isaac 
1818cc48ffa7SToby Isaac     if (nextrecvisfrom != rank) {
1819cc48ffa7SToby Isaac       /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */
1820cc48ffa7SToby Isaac       sendsiz = cK * bn;
1821cc48ffa7SToby Isaac       recvsiz = cK * nextbn;
1822cc48ffa7SToby Isaac       recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1];
1823cc48ffa7SToby Isaac       ierr = MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0]);CHKERRQ(ierr);
1824cc48ffa7SToby Isaac       ierr = MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1]);CHKERRQ(ierr);
1825cc48ffa7SToby Isaac     }
1826cc48ffa7SToby Isaac 
1827cc48ffa7SToby Isaac     /* local aseq * sendbuf^T */
1828cc48ffa7SToby Isaac     ierr = PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn);CHKERRQ(ierr);
1829cc48ffa7SToby Isaac     carray = &cseq->v[cseq->lda * ranges[recvisfrom]];
1830cc48ffa7SToby Isaac     PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&cm,&cn,&ck,&_DOne,aseq->v,&aseq->lda,sendbuf,&cn,&_DZero,carray,&cseq->lda));
1831cc48ffa7SToby Isaac 
1832cc48ffa7SToby Isaac     if (nextrecvisfrom != rank) {
1833cc48ffa7SToby Isaac       /* wait for the sends and receives to complete, swap sendbuf and recvbuf */
1834cc48ffa7SToby Isaac       ierr = MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE);CHKERRQ(ierr);
1835cc48ffa7SToby Isaac     }
1836cc48ffa7SToby Isaac     bn = nextbn;
1837cc48ffa7SToby Isaac     recvisfrom = nextrecvisfrom;
1838cc48ffa7SToby Isaac     sendbuf = recvbuf;
1839cc48ffa7SToby Isaac   }
1840cc48ffa7SToby Isaac   PetscFunctionReturn(0);
1841cc48ffa7SToby Isaac }
1842cc48ffa7SToby Isaac 
1843faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C)
1844faa55883SToby Isaac {
1845faa55883SToby Isaac   Mat_MPIDense   *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data;
1846faa55883SToby Isaac   Mat_SeqDense   *aseq=(Mat_SeqDense*)(a->A)->data, *bseq=(Mat_SeqDense*)(b->A)->data;
1847faa55883SToby Isaac   Mat_SeqDense   *cseq=(Mat_SeqDense*)(c->A)->data;
1848faa55883SToby Isaac   Mat_MatTransMultDense *abt = c->abtdense;
1849faa55883SToby Isaac   PetscErrorCode ierr;
1850faa55883SToby Isaac   MPI_Comm       comm;
1851faa55883SToby Isaac   PetscMPIInt    rank,size;
1852faa55883SToby Isaac   PetscScalar    *sendbuf, *recvbuf;
1853faa55883SToby Isaac   PetscInt       i,cK=A->cmap->N,k,j,bn;
1854faa55883SToby Isaac   PetscScalar    _DOne=1.0,_DZero=0.0;
1855faa55883SToby Isaac   PetscBLASInt   cm, cn, ck;
1856faa55883SToby Isaac 
1857faa55883SToby Isaac   PetscFunctionBegin;
1858faa55883SToby Isaac   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
1859faa55883SToby Isaac   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
1860faa55883SToby Isaac   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1861faa55883SToby Isaac 
1862faa55883SToby Isaac   /* copy transpose of B into buf[0] */
1863faa55883SToby Isaac   bn      = B->rmap->n;
1864faa55883SToby Isaac   sendbuf = abt->buf[0];
1865faa55883SToby Isaac   recvbuf = abt->buf[1];
1866faa55883SToby Isaac   for (k = 0, j = 0; j < bn; j++) {
1867faa55883SToby Isaac     for (i = 0; i < cK; i++, k++) {
1868faa55883SToby Isaac       sendbuf[k] = bseq->v[i * bseq->lda + j];
1869faa55883SToby Isaac     }
1870faa55883SToby Isaac   }
1871faa55883SToby Isaac   ierr = MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm);CHKERRQ(ierr);
1872faa55883SToby Isaac   ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr);
1873faa55883SToby Isaac   ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr);
1874faa55883SToby Isaac   ierr = PetscBLASIntCast(c->A->cmap->n,&cn);CHKERRQ(ierr);
1875faa55883SToby Isaac   PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&cm,&cn,&ck,&_DOne,aseq->v,&aseq->lda,recvbuf,&ck,&_DZero,cseq->v,&cseq->lda));
1876faa55883SToby Isaac   PetscFunctionReturn(0);
1877faa55883SToby Isaac }
1878faa55883SToby Isaac 
1879faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C)
1880faa55883SToby Isaac {
1881faa55883SToby Isaac   Mat_MPIDense          *c=(Mat_MPIDense*)C->data;
1882faa55883SToby Isaac   Mat_MatTransMultDense *abt = c->abtdense;
1883faa55883SToby Isaac   PetscErrorCode        ierr;
1884faa55883SToby Isaac 
1885faa55883SToby Isaac   PetscFunctionBegin;
1886faa55883SToby Isaac   switch (abt->alg) {
1887faa55883SToby Isaac   case 1:
1888faa55883SToby Isaac     ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C);CHKERRQ(ierr);
1889faa55883SToby Isaac     break;
1890faa55883SToby Isaac   default:
1891faa55883SToby Isaac     ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C);CHKERRQ(ierr);
1892faa55883SToby Isaac     break;
1893faa55883SToby Isaac   }
1894faa55883SToby Isaac   PetscFunctionReturn(0);
1895faa55883SToby Isaac }
1896faa55883SToby Isaac 
1897320f2790SHong Zhang PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(Mat A)
1898320f2790SHong Zhang {
1899320f2790SHong Zhang   PetscErrorCode   ierr;
1900320f2790SHong Zhang   Mat_MPIDense     *a = (Mat_MPIDense*)A->data;
1901320f2790SHong Zhang   Mat_MatMultDense *ab = a->abdense;
1902320f2790SHong Zhang 
1903320f2790SHong Zhang   PetscFunctionBegin;
1904320f2790SHong Zhang   ierr = MatDestroy(&ab->Ce);CHKERRQ(ierr);
1905320f2790SHong Zhang   ierr = MatDestroy(&ab->Ae);CHKERRQ(ierr);
1906320f2790SHong Zhang   ierr = MatDestroy(&ab->Be);CHKERRQ(ierr);
1907320f2790SHong Zhang 
1908320f2790SHong Zhang   ierr = (ab->destroy)(A);CHKERRQ(ierr);
1909320f2790SHong Zhang   ierr = PetscFree(ab);CHKERRQ(ierr);
1910320f2790SHong Zhang   PetscFunctionReturn(0);
1911320f2790SHong Zhang }
1912320f2790SHong Zhang 
19135242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
1914320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C)
1915320f2790SHong Zhang {
1916320f2790SHong Zhang   PetscErrorCode   ierr;
1917320f2790SHong Zhang   Mat_MPIDense     *c=(Mat_MPIDense*)C->data;
1918320f2790SHong Zhang   Mat_MatMultDense *ab=c->abdense;
1919320f2790SHong Zhang 
1920320f2790SHong Zhang   PetscFunctionBegin;
1921de0a22f0SHong Zhang   ierr = MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae);CHKERRQ(ierr);
1922de0a22f0SHong Zhang   ierr = MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be);CHKERRQ(ierr);
19234222ddf1SHong Zhang   ierr = MatMatMultNumeric_Elemental(ab->Ae,ab->Be,ab->Ce);CHKERRQ(ierr);
1924de0a22f0SHong Zhang   ierr = MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C);CHKERRQ(ierr);
1925320f2790SHong Zhang   PetscFunctionReturn(0);
1926320f2790SHong Zhang }
1927320f2790SHong Zhang 
19284222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C)
1929320f2790SHong Zhang {
1930320f2790SHong Zhang   PetscErrorCode   ierr;
1931320f2790SHong Zhang   Mat              Ae,Be,Ce;
1932320f2790SHong Zhang   Mat_MPIDense     *c;
1933320f2790SHong Zhang   Mat_MatMultDense *ab;
1934320f2790SHong Zhang 
1935320f2790SHong Zhang   PetscFunctionBegin;
19364222ddf1SHong Zhang   /* check local size of A and B */
1937320f2790SHong Zhang   if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) {
1938378336b6SHong Zhang     SETERRQ4(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend);
1939320f2790SHong Zhang   }
1940320f2790SHong Zhang 
19414222ddf1SHong Zhang   /* create elemental matrices Ae and Be */
19424222ddf1SHong Zhang   ierr = MatCreate(PetscObjectComm((PetscObject)A), &Ae);CHKERRQ(ierr);
19434222ddf1SHong Zhang   ierr = MatSetSizes(Ae,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
19444222ddf1SHong Zhang   ierr = MatSetType(Ae,MATELEMENTAL);CHKERRQ(ierr);
19454222ddf1SHong Zhang   ierr = MatSetUp(Ae);CHKERRQ(ierr);
19464222ddf1SHong Zhang   ierr = MatSetOption(Ae,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
1947320f2790SHong Zhang 
19484222ddf1SHong Zhang   ierr = MatCreate(PetscObjectComm((PetscObject)B), &Be);CHKERRQ(ierr);
19494222ddf1SHong Zhang   ierr = MatSetSizes(Be,PETSC_DECIDE,PETSC_DECIDE,B->rmap->N,B->cmap->N);CHKERRQ(ierr);
19504222ddf1SHong Zhang   ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr);
19514222ddf1SHong Zhang   ierr = MatSetUp(Be);CHKERRQ(ierr);
19524222ddf1SHong Zhang   ierr = MatSetOption(Be,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
1953320f2790SHong Zhang 
19544222ddf1SHong Zhang   /* compute symbolic Ce = Ae*Be */
19554222ddf1SHong Zhang   ierr = MatCreate(PetscObjectComm((PetscObject)C),&Ce);CHKERRQ(ierr);
19564222ddf1SHong Zhang   ierr = MatMatMultSymbolic_Elemental(Ae,Be,fill,Ce);CHKERRQ(ierr);
19574222ddf1SHong Zhang 
19584222ddf1SHong Zhang   /* setup C */
19594222ddf1SHong Zhang   ierr = MatSetSizes(C,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
19604222ddf1SHong Zhang   ierr = MatSetType(C,MATDENSE);CHKERRQ(ierr);
19614222ddf1SHong Zhang   ierr = MatSetUp(C);CHKERRQ(ierr);
1962320f2790SHong Zhang 
1963320f2790SHong Zhang   /* create data structure for reuse Cdense */
1964320f2790SHong Zhang   ierr = PetscNew(&ab);CHKERRQ(ierr);
19654222ddf1SHong Zhang   c                  = (Mat_MPIDense*)C->data;
1966320f2790SHong Zhang   c->abdense         = ab;
1967320f2790SHong Zhang 
1968320f2790SHong Zhang   ab->Ae             = Ae;
1969320f2790SHong Zhang   ab->Be             = Be;
1970320f2790SHong Zhang   ab->Ce             = Ce;
19714222ddf1SHong Zhang   ab->destroy        = C->ops->destroy;
19724222ddf1SHong Zhang   C->ops->destroy        = MatDestroy_MatMatMult_MPIDense_MPIDense;
19734222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense;
19744222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
1975320f2790SHong Zhang   PetscFunctionReturn(0);
1976320f2790SHong Zhang }
19774222ddf1SHong Zhang #endif
19784222ddf1SHong Zhang /* ----------------------------------------------- */
19794222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
19804222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AB(Mat C)
1981320f2790SHong Zhang {
1982320f2790SHong Zhang   PetscFunctionBegin;
19834222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIDense;
19844222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
19854222ddf1SHong Zhang   C->ops->productnumeric  = MatProductNumeric_AB;
1986320f2790SHong Zhang   PetscFunctionReturn(0);
1987320f2790SHong Zhang }
19885242a7b1SHong Zhang #endif
198986aefd0dSHong Zhang 
19904222ddf1SHong Zhang static PetscErrorCode MatProductSymbolic_AtB_MPIDense(Mat C)
19914222ddf1SHong Zhang {
19924222ddf1SHong Zhang   PetscErrorCode ierr;
19934222ddf1SHong Zhang   Mat_Product    *product = C->product;
19944222ddf1SHong Zhang 
19954222ddf1SHong Zhang   PetscFunctionBegin;
19964222ddf1SHong Zhang   ierr = MatTransposeMatMultSymbolic_MPIDense_MPIDense(product->A,product->B,product->fill,C);CHKERRQ(ierr);
19974222ddf1SHong Zhang   C->ops->productnumeric          = MatProductNumeric_AtB;
19984222ddf1SHong Zhang   C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIDense_MPIDense;
19994222ddf1SHong Zhang   PetscFunctionReturn(0);
20004222ddf1SHong Zhang }
20014222ddf1SHong Zhang 
20024222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AtB(Mat C)
20034222ddf1SHong Zhang {
20044222ddf1SHong Zhang   Mat_Product *product = C->product;
20054222ddf1SHong Zhang   Mat         A = product->A,B=product->B;
20064222ddf1SHong Zhang 
20074222ddf1SHong Zhang   PetscFunctionBegin;
20084222ddf1SHong Zhang   if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend)
20094222ddf1SHong Zhang     SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%D, %D) != (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend);
20104222ddf1SHong Zhang 
20114222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AtB_MPIDense;
20124222ddf1SHong Zhang   PetscFunctionReturn(0);
20134222ddf1SHong Zhang }
20144222ddf1SHong Zhang 
20154222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_ABt(Mat C)
20164222ddf1SHong Zhang {
20174222ddf1SHong Zhang   PetscErrorCode ierr;
20184222ddf1SHong Zhang   Mat_Product    *product = C->product;
20194222ddf1SHong Zhang   const char     *algTypes[2] = {"allgatherv","cyclic"};
20204222ddf1SHong Zhang   PetscInt       alg,nalg = 2;
20214222ddf1SHong Zhang   PetscBool      flg = PETSC_FALSE;
20224222ddf1SHong Zhang 
20234222ddf1SHong Zhang   PetscFunctionBegin;
20244222ddf1SHong Zhang   /* Set default algorithm */
20254222ddf1SHong Zhang   alg = 0; /* default is allgatherv */
20264222ddf1SHong Zhang   ierr = PetscStrcmp(product->alg,"default",&flg);CHKERRQ(ierr);
20274222ddf1SHong Zhang   if (flg) {
20284222ddf1SHong Zhang     ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr);
20294222ddf1SHong Zhang   }
20304222ddf1SHong Zhang 
20314222ddf1SHong Zhang   /* Get runtime option */
20324222ddf1SHong Zhang   if (product->api_user) {
20334222ddf1SHong Zhang     ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatTransposeMult","Mat");CHKERRQ(ierr);
20344222ddf1SHong Zhang     ierr = PetscOptionsEList("-matmattransmult_mpidense_mpidense_via","Algorithmic approach","MatMatTransposeMult",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr);
20354222ddf1SHong Zhang     ierr = PetscOptionsEnd();CHKERRQ(ierr);
20364222ddf1SHong Zhang   } else {
20374222ddf1SHong Zhang     ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_ABt","Mat");CHKERRQ(ierr);
20384222ddf1SHong Zhang     ierr = PetscOptionsEList("-matproduct_abt_mpidense_mpidense_via","Algorithmic approach","MatProduct_ABt",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr);
20394222ddf1SHong Zhang     ierr = PetscOptionsEnd();CHKERRQ(ierr);
20404222ddf1SHong Zhang   }
20414222ddf1SHong Zhang   if (flg) {
20424222ddf1SHong Zhang     ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr);
20434222ddf1SHong Zhang   }
20444222ddf1SHong Zhang 
20454222ddf1SHong Zhang   C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_MPIDense_MPIDense;
20464222ddf1SHong Zhang   C->ops->productsymbolic          = MatProductSymbolic_ABt;
20474222ddf1SHong Zhang   C->ops->productnumeric           = MatProductNumeric_ABt;
20484222ddf1SHong Zhang   PetscFunctionReturn(0);
20494222ddf1SHong Zhang }
20504222ddf1SHong Zhang 
20514222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense(Mat C)
20524222ddf1SHong Zhang {
20534222ddf1SHong Zhang   PetscErrorCode ierr;
20544222ddf1SHong Zhang   Mat_Product    *product = C->product;
20554222ddf1SHong Zhang 
20564222ddf1SHong Zhang   PetscFunctionBegin;
20574222ddf1SHong Zhang   switch (product->type) {
20584222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
20594222ddf1SHong Zhang   case MATPRODUCT_AB:
20604222ddf1SHong Zhang     ierr = MatProductSetFromOptions_MPIDense_AB(C);CHKERRQ(ierr);
20614222ddf1SHong Zhang     break;
20624222ddf1SHong Zhang #endif
20634222ddf1SHong Zhang   case MATPRODUCT_AtB:
20644222ddf1SHong Zhang     ierr = MatProductSetFromOptions_MPIDense_AtB(C);CHKERRQ(ierr);
20654222ddf1SHong Zhang     break;
20664222ddf1SHong Zhang   case MATPRODUCT_ABt:
20674222ddf1SHong Zhang     ierr = MatProductSetFromOptions_MPIDense_ABt(C);CHKERRQ(ierr);
20684222ddf1SHong Zhang     break;
2069544a5e07SHong Zhang   default: SETERRQ1(PetscObjectComm((PetscObject)C),PETSC_ERR_SUP,"MatProduct type %s is not supported for MPIDense and MPIDense matrices",MatProductTypes[product->type]);
20704222ddf1SHong Zhang   }
20714222ddf1SHong Zhang   PetscFunctionReturn(0);
20724222ddf1SHong Zhang }
2073