1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 4ed3cc1f0SBarry Smith */ 5ed3cc1f0SBarry Smith 604fea9ffSBarry Smith 7c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 88949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 98965ea79SLois Curfman McInnes 10ba8c8a56SBarry Smith #undef __FUNCT__ 11ab92ecdeSBarry Smith #define __FUNCT__ "MatDenseGetLocalMatrix" 12ab92ecdeSBarry Smith /*@ 13ab92ecdeSBarry Smith 14ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 15ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 16ab92ecdeSBarry Smith 17ab92ecdeSBarry Smith Input Parameter: 18ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 19ab92ecdeSBarry Smith 20ab92ecdeSBarry Smith Output Parameter: 21ab92ecdeSBarry Smith . B - the inner matrix 22ab92ecdeSBarry Smith 238e6c10adSSatish Balay Level: intermediate 248e6c10adSSatish Balay 25ab92ecdeSBarry Smith @*/ 26ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 27ab92ecdeSBarry Smith { 28ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 29ab92ecdeSBarry Smith PetscErrorCode ierr; 30ace3abfcSBarry Smith PetscBool flg; 31ab92ecdeSBarry Smith 32ab92ecdeSBarry Smith PetscFunctionBegin; 33251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr); 342205254eSKarl Rupp if (flg) *B = mat->A; 352205254eSKarl Rupp else *B = A; 36ab92ecdeSBarry Smith PetscFunctionReturn(0); 37ab92ecdeSBarry Smith } 38ab92ecdeSBarry Smith 39ab92ecdeSBarry Smith #undef __FUNCT__ 40ba8c8a56SBarry Smith #define __FUNCT__ "MatGetRow_MPIDense" 41ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 42ba8c8a56SBarry Smith { 43ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 44ba8c8a56SBarry Smith PetscErrorCode ierr; 45d0f46423SBarry Smith PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 46ba8c8a56SBarry Smith 47ba8c8a56SBarry Smith PetscFunctionBegin; 48e7e72b3dSBarry Smith if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 49ba8c8a56SBarry Smith lrow = row - rstart; 50ba8c8a56SBarry Smith ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr); 51ba8c8a56SBarry Smith PetscFunctionReturn(0); 52ba8c8a56SBarry Smith } 53ba8c8a56SBarry Smith 54ba8c8a56SBarry Smith #undef __FUNCT__ 55ba8c8a56SBarry Smith #define __FUNCT__ "MatRestoreRow_MPIDense" 56ba8c8a56SBarry Smith PetscErrorCode MatRestoreRow_MPIDense(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 57ba8c8a56SBarry Smith { 58ba8c8a56SBarry Smith PetscErrorCode ierr; 59ba8c8a56SBarry Smith 60ba8c8a56SBarry Smith PetscFunctionBegin; 61ba8c8a56SBarry Smith if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);} 62ba8c8a56SBarry Smith if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);} 63ba8c8a56SBarry Smith PetscFunctionReturn(0); 64ba8c8a56SBarry Smith } 65ba8c8a56SBarry Smith 664a2ae208SSatish Balay #undef __FUNCT__ 674a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIDense" 6811bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A,Mat *a) 690de54da6SSatish Balay { 700de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 716849ba73SBarry Smith PetscErrorCode ierr; 72d0f46423SBarry Smith PetscInt m = A->rmap->n,rstart = A->rmap->rstart; 7387828ca2SBarry Smith PetscScalar *array; 740de54da6SSatish Balay MPI_Comm comm; 7511bd1e4dSLisandro Dalcin Mat B; 760de54da6SSatish Balay 770de54da6SSatish Balay PetscFunctionBegin; 78e32f2f54SBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported."); 790de54da6SSatish Balay 8011bd1e4dSLisandro Dalcin ierr = PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B);CHKERRQ(ierr); 8111bd1e4dSLisandro Dalcin if (!B) { 820de54da6SSatish Balay ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr); 8311bd1e4dSLisandro Dalcin ierr = MatCreate(comm,&B);CHKERRQ(ierr); 8411bd1e4dSLisandro Dalcin ierr = MatSetSizes(B,m,m,m,m);CHKERRQ(ierr); 8511bd1e4dSLisandro Dalcin ierr = MatSetType(B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr); 868c778c55SBarry Smith ierr = MatDenseGetArray(mdn->A,&array);CHKERRQ(ierr); 8711bd1e4dSLisandro Dalcin ierr = MatSeqDenseSetPreallocation(B,array+m*rstart);CHKERRQ(ierr); 888c778c55SBarry Smith ierr = MatDenseRestoreArray(mdn->A,&array);CHKERRQ(ierr); 8911bd1e4dSLisandro Dalcin ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9011bd1e4dSLisandro Dalcin ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9111bd1e4dSLisandro Dalcin ierr = PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B);CHKERRQ(ierr); 9211bd1e4dSLisandro Dalcin *a = B; 9311bd1e4dSLisandro Dalcin ierr = MatDestroy(&B);CHKERRQ(ierr); 942205254eSKarl Rupp } else *a = B; 950de54da6SSatish Balay PetscFunctionReturn(0); 960de54da6SSatish Balay } 970de54da6SSatish Balay 984a2ae208SSatish Balay #undef __FUNCT__ 994a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIDense" 10013f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 1018965ea79SLois Curfman McInnes { 10239b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 103dfbe8321SBarry Smith PetscErrorCode ierr; 104d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 105ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 1068965ea79SLois Curfman McInnes 1073a40ed3dSBarry Smith PetscFunctionBegin; 10871fd2e92SBarry Smith if (v) PetscValidScalarPointer(v,6); 1098965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1105ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 111e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1128965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1138965ea79SLois Curfman McInnes row = idxm[i] - rstart; 11439b7565bSBarry Smith if (roworiented) { 11539b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr); 1163a40ed3dSBarry Smith } else { 1178965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1185ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 119e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 12039b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr); 12139b7565bSBarry Smith } 1228965ea79SLois Curfman McInnes } 1232205254eSKarl Rupp } else if (!A->donotstash) { 1245080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 12539b7565bSBarry Smith if (roworiented) { 126b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 127d36fbae8SSatish Balay } else { 128b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 12939b7565bSBarry Smith } 130b49de8d1SLois Curfman McInnes } 131b49de8d1SLois Curfman McInnes } 1323a40ed3dSBarry Smith PetscFunctionReturn(0); 133b49de8d1SLois Curfman McInnes } 134b49de8d1SLois Curfman McInnes 1354a2ae208SSatish Balay #undef __FUNCT__ 1364a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIDense" 13713f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 138b49de8d1SLois Curfman McInnes { 139b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 140dfbe8321SBarry Smith PetscErrorCode ierr; 141d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 142b49de8d1SLois Curfman McInnes 1433a40ed3dSBarry Smith PetscFunctionBegin; 144b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 145e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */ 146e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 147b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 148b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 149b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 150e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */ 151e7e72b3dSBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 152b49de8d1SLois Curfman McInnes ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr); 153b49de8d1SLois Curfman McInnes } 154e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 1558965ea79SLois Curfman McInnes } 1563a40ed3dSBarry Smith PetscFunctionReturn(0); 1578965ea79SLois Curfman McInnes } 1588965ea79SLois Curfman McInnes 1594a2ae208SSatish Balay #undef __FUNCT__ 1608c778c55SBarry Smith #define __FUNCT__ "MatDenseGetArray_MPIDense" 1618c778c55SBarry Smith PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar *array[]) 162ff14e315SSatish Balay { 163ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 164dfbe8321SBarry Smith PetscErrorCode ierr; 165ff14e315SSatish Balay 1663a40ed3dSBarry Smith PetscFunctionBegin; 1678c778c55SBarry Smith ierr = MatDenseGetArray(a->A,array);CHKERRQ(ierr); 1683a40ed3dSBarry Smith PetscFunctionReturn(0); 169ff14e315SSatish Balay } 170ff14e315SSatish Balay 1714a2ae208SSatish Balay #undef __FUNCT__ 1724a2ae208SSatish Balay #define __FUNCT__ "MatGetSubMatrix_MPIDense" 1734aa3045dSJed Brown static PetscErrorCode MatGetSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B) 174ca3fa75bSLois Curfman McInnes { 175ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 176ca3fa75bSLois Curfman McInnes Mat_SeqDense *lmat = (Mat_SeqDense*)mat->A->data; 1776849ba73SBarry Smith PetscErrorCode ierr; 1784aa3045dSJed Brown PetscInt i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols; 1795d0c19d7SBarry Smith const PetscInt *irow,*icol; 18087828ca2SBarry Smith PetscScalar *av,*bv,*v = lmat->v; 181ca3fa75bSLois Curfman McInnes Mat newmat; 1824aa3045dSJed Brown IS iscol_local; 183ca3fa75bSLois Curfman McInnes 184ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 1854aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 186ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 1874aa3045dSJed Brown ierr = ISGetIndices(iscol_local,&icol);CHKERRQ(ierr); 188b9b97703SBarry Smith ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 189b9b97703SBarry Smith ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 1904aa3045dSJed Brown ierr = ISGetSize(iscol,&Ncols);CHKERRQ(ierr); /* global number of columns, size of iscol_local */ 191ca3fa75bSLois Curfman McInnes 192ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 1937eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 1947eba5e9cSLois Curfman McInnes original matrix! */ 195ca3fa75bSLois Curfman McInnes 196ca3fa75bSLois Curfman McInnes ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr); 1977eba5e9cSLois Curfman McInnes ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 198ca3fa75bSLois Curfman McInnes 199ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 200ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 201e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 2027eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 203ca3fa75bSLois Curfman McInnes newmat = *B; 204ca3fa75bSLois Curfman McInnes } else { 205ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 206ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr); 2074aa3045dSJed Brown ierr = MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols);CHKERRQ(ierr); 2087adad957SLisandro Dalcin ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 2090298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 210ca3fa75bSLois Curfman McInnes } 211ca3fa75bSLois Curfman McInnes 212ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 213ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 214ca3fa75bSLois Curfman McInnes bv = ((Mat_SeqDense*)newmatd->A->data)->v; 215ca3fa75bSLois Curfman McInnes 2164aa3045dSJed Brown for (i=0; i<Ncols; i++) { 21725a33276SHong Zhang av = v + ((Mat_SeqDense*)mat->A->data)->lda*icol[i]; 218ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 2197eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 220ca3fa75bSLois Curfman McInnes } 221ca3fa75bSLois Curfman McInnes } 222ca3fa75bSLois Curfman McInnes 223ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 224ca3fa75bSLois Curfman McInnes ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 225ca3fa75bSLois Curfman McInnes ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 226ca3fa75bSLois Curfman McInnes 227ca3fa75bSLois Curfman McInnes /* Free work space */ 228ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 2295bdf786aSShri Abhyankar ierr = ISRestoreIndices(iscol_local,&icol);CHKERRQ(ierr); 23032bb1f2dSLisandro Dalcin ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 231ca3fa75bSLois Curfman McInnes *B = newmat; 232ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 233ca3fa75bSLois Curfman McInnes } 234ca3fa75bSLois Curfman McInnes 2354a2ae208SSatish Balay #undef __FUNCT__ 2368c778c55SBarry Smith #define __FUNCT__ "MatDenseRestoreArray_MPIDense" 2378c778c55SBarry Smith PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar *array[]) 238ff14e315SSatish Balay { 23973a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 24073a71a0fSBarry Smith PetscErrorCode ierr; 24173a71a0fSBarry Smith 2423a40ed3dSBarry Smith PetscFunctionBegin; 2438c778c55SBarry Smith ierr = MatDenseRestoreArray(a->A,array);CHKERRQ(ierr); 2443a40ed3dSBarry Smith PetscFunctionReturn(0); 245ff14e315SSatish Balay } 246ff14e315SSatish Balay 2474a2ae208SSatish Balay #undef __FUNCT__ 2484a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIDense" 249dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 2508965ea79SLois Curfman McInnes { 25139ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 252ce94432eSBarry Smith MPI_Comm comm; 253dfbe8321SBarry Smith PetscErrorCode ierr; 25413f74950SBarry Smith PetscInt nstash,reallocs; 2558965ea79SLois Curfman McInnes InsertMode addv; 2568965ea79SLois Curfman McInnes 2573a40ed3dSBarry Smith PetscFunctionBegin; 258ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr); 2598965ea79SLois Curfman McInnes /* make sure all processors are either in INSERTMODE or ADDMODE */ 260c3aae356SJed Brown ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,comm);CHKERRQ(ierr); 261ce94432eSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Cannot mix adds/inserts on different procs"); 262e0fa3b82SLois Curfman McInnes mat->insertmode = addv; /* in case this processor had no cache */ 2638965ea79SLois Curfman McInnes 264d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 2658798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 266ae15b995SBarry Smith ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 2673a40ed3dSBarry Smith PetscFunctionReturn(0); 2688965ea79SLois Curfman McInnes } 2698965ea79SLois Curfman McInnes 2704a2ae208SSatish Balay #undef __FUNCT__ 2714a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIDense" 272dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 2738965ea79SLois Curfman McInnes { 27439ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 2756849ba73SBarry Smith PetscErrorCode ierr; 27613f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 27713f74950SBarry Smith PetscMPIInt n; 27887828ca2SBarry Smith PetscScalar *val; 279e0fa3b82SLois Curfman McInnes InsertMode addv=mat->insertmode; 2808965ea79SLois Curfman McInnes 2813a40ed3dSBarry Smith PetscFunctionBegin; 2828965ea79SLois Curfman McInnes /* wait on receives */ 2837ef1d9bdSSatish Balay while (1) { 2848798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 2857ef1d9bdSSatish Balay if (!flg) break; 2868965ea79SLois Curfman McInnes 2877ef1d9bdSSatish Balay for (i=0; i<n;) { 2887ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 2892205254eSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 2902205254eSKarl Rupp if (row[j] != rstart) break; 2912205254eSKarl Rupp } 2927ef1d9bdSSatish Balay if (j < n) ncols = j-i; 2937ef1d9bdSSatish Balay else ncols = n-i; 2947ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 2957ef1d9bdSSatish Balay ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 2967ef1d9bdSSatish Balay i = j; 2978965ea79SLois Curfman McInnes } 2987ef1d9bdSSatish Balay } 2998798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 3008965ea79SLois Curfman McInnes 30139ddd567SLois Curfman McInnes ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr); 30239ddd567SLois Curfman McInnes ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr); 3038965ea79SLois Curfman McInnes 3046d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 30539ddd567SLois Curfman McInnes ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 3068965ea79SLois Curfman McInnes } 3073a40ed3dSBarry Smith PetscFunctionReturn(0); 3088965ea79SLois Curfman McInnes } 3098965ea79SLois Curfman McInnes 3104a2ae208SSatish Balay #undef __FUNCT__ 3114a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIDense" 312dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 3138965ea79SLois Curfman McInnes { 314dfbe8321SBarry Smith PetscErrorCode ierr; 31539ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3163a40ed3dSBarry Smith 3173a40ed3dSBarry Smith PetscFunctionBegin; 3183a40ed3dSBarry Smith ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 3193a40ed3dSBarry Smith PetscFunctionReturn(0); 3208965ea79SLois Curfman McInnes } 3218965ea79SLois Curfman McInnes 3228965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the 3238965ea79SLois Curfman McInnes matrix is square and the column and row owerships are identical. 3248965ea79SLois Curfman McInnes This is a BUG. The only way to fix it seems to be to access 3253501a2bdSLois Curfman McInnes mdn->A and mdn->B directly and not through the MatZeroRows() 3268965ea79SLois Curfman McInnes routine. 3278965ea79SLois Curfman McInnes */ 3284a2ae208SSatish Balay #undef __FUNCT__ 3294a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIDense" 3302b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 3318965ea79SLois Curfman McInnes { 33239ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3336849ba73SBarry Smith PetscErrorCode ierr; 334d0f46423SBarry Smith PetscInt i,*owners = A->rmap->range; 33576ec1555SBarry Smith PetscInt *sizes,j,idx,nsends; 33613f74950SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 3377adad957SLisandro Dalcin PetscInt *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source; 33813f74950SBarry Smith PetscInt *lens,*lrows,*values; 33913f74950SBarry Smith PetscMPIInt n,imdex,rank = l->rank,size = l->size; 340ce94432eSBarry Smith MPI_Comm comm; 3418965ea79SLois Curfman McInnes MPI_Request *send_waits,*recv_waits; 3428965ea79SLois Curfman McInnes MPI_Status recv_status,*send_status; 343ace3abfcSBarry Smith PetscBool found; 34497b48c8fSBarry Smith const PetscScalar *xx; 34597b48c8fSBarry Smith PetscScalar *bb; 3468965ea79SLois Curfman McInnes 3473a40ed3dSBarry Smith PetscFunctionBegin; 348ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 349ce94432eSBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(comm,PETSC_ERR_SUP,"Only handles square matrices"); 350b9679d65SBarry Smith if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only handles matrices with identical column and row ownership"); 3518965ea79SLois Curfman McInnes /* first count number of contributors to each processor */ 352f628708eSJed Brown ierr = PetscCalloc1(2*size,&sizes);CHKERRQ(ierr); 353037dbc42SBarry Smith ierr = PetscMalloc1(N+1,&owner);CHKERRQ(ierr); /* see note*/ 3548965ea79SLois Curfman McInnes for (i=0; i<N; i++) { 3558965ea79SLois Curfman McInnes idx = rows[i]; 35635d8aa7fSBarry Smith found = PETSC_FALSE; 3578965ea79SLois Curfman McInnes for (j=0; j<size; j++) { 3588965ea79SLois Curfman McInnes if (idx >= owners[j] && idx < owners[j+1]) { 35976ec1555SBarry Smith sizes[2*j]++; sizes[2*j+1] = 1; owner[i] = j; found = PETSC_TRUE; break; 3608965ea79SLois Curfman McInnes } 3618965ea79SLois Curfman McInnes } 362e32f2f54SBarry Smith if (!found) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 3638965ea79SLois Curfman McInnes } 3642205254eSKarl Rupp nsends = 0; 36576ec1555SBarry Smith for (i=0; i<size; i++) nsends += sizes[2*i+1]; 3668965ea79SLois Curfman McInnes 3678965ea79SLois Curfman McInnes /* inform other processors of number of messages and max length*/ 36876ec1555SBarry Smith ierr = PetscMaxSum(comm,sizes,&nmax,&nrecvs);CHKERRQ(ierr); 3698965ea79SLois Curfman McInnes 3708965ea79SLois Curfman McInnes /* post receives: */ 371785e854fSJed Brown ierr = PetscMalloc1((nrecvs+1)*(nmax+1),&rvalues);CHKERRQ(ierr); 372785e854fSJed Brown ierr = PetscMalloc1((nrecvs+1),&recv_waits);CHKERRQ(ierr); 3738965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 37413f74950SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 3758965ea79SLois Curfman McInnes } 3768965ea79SLois Curfman McInnes 3778965ea79SLois Curfman McInnes /* do sends: 3788965ea79SLois Curfman McInnes 1) starts[i] gives the starting index in svalues for stuff going to 3798965ea79SLois Curfman McInnes the ith processor 3808965ea79SLois Curfman McInnes */ 381785e854fSJed Brown ierr = PetscMalloc1((N+1),&svalues);CHKERRQ(ierr); 382785e854fSJed Brown ierr = PetscMalloc1((nsends+1),&send_waits);CHKERRQ(ierr); 383785e854fSJed Brown ierr = PetscMalloc1((size+1),&starts);CHKERRQ(ierr); 3848965ea79SLois Curfman McInnes 3858965ea79SLois Curfman McInnes starts[0] = 0; 38676ec1555SBarry Smith for (i=1; i<size; i++) starts[i] = starts[i-1] + sizes[2*i-2]; 3872205254eSKarl Rupp for (i=0; i<N; i++) svalues[starts[owner[i]]++] = rows[i]; 3882205254eSKarl Rupp 3892205254eSKarl Rupp starts[0] = 0; 39076ec1555SBarry Smith for (i=1; i<size+1; i++) starts[i] = starts[i-1] + sizes[2*i-2]; 3918965ea79SLois Curfman McInnes count = 0; 3928965ea79SLois Curfman McInnes for (i=0; i<size; i++) { 39376ec1555SBarry Smith if (sizes[2*i+1]) { 39476ec1555SBarry Smith ierr = MPI_Isend(svalues+starts[i],sizes[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 3958965ea79SLois Curfman McInnes } 3968965ea79SLois Curfman McInnes } 397606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 3988965ea79SLois Curfman McInnes 3998965ea79SLois Curfman McInnes base = owners[rank]; 4008965ea79SLois Curfman McInnes 4018965ea79SLois Curfman McInnes /* wait on receives */ 402dcca6d9dSJed Brown ierr = PetscMalloc2(nrecvs,&lens,nrecvs,&source);CHKERRQ(ierr); 40374ed9c26SBarry Smith count = nrecvs; 40474ed9c26SBarry Smith slen = 0; 4058965ea79SLois Curfman McInnes while (count) { 406ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 4078965ea79SLois Curfman McInnes /* unpack receives into our local space */ 40813f74950SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 4092205254eSKarl Rupp 4108965ea79SLois Curfman McInnes source[imdex] = recv_status.MPI_SOURCE; 4118965ea79SLois Curfman McInnes lens[imdex] = n; 4128965ea79SLois Curfman McInnes slen += n; 4138965ea79SLois Curfman McInnes count--; 4148965ea79SLois Curfman McInnes } 415606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 4168965ea79SLois Curfman McInnes 4178965ea79SLois Curfman McInnes /* move the data into the send scatter */ 418785e854fSJed Brown ierr = PetscMalloc1((slen+1),&lrows);CHKERRQ(ierr); 4198965ea79SLois Curfman McInnes count = 0; 4208965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 4218965ea79SLois Curfman McInnes values = rvalues + i*nmax; 4228965ea79SLois Curfman McInnes for (j=0; j<lens[i]; j++) { 4238965ea79SLois Curfman McInnes lrows[count++] = values[j] - base; 4248965ea79SLois Curfman McInnes } 4258965ea79SLois Curfman McInnes } 426606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 42774ed9c26SBarry Smith ierr = PetscFree2(lens,source);CHKERRQ(ierr); 428606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 42976ec1555SBarry Smith ierr = PetscFree(sizes);CHKERRQ(ierr); 4308965ea79SLois Curfman McInnes 43197b48c8fSBarry Smith /* fix right hand side if needed */ 43297b48c8fSBarry Smith if (x && b) { 43397b48c8fSBarry Smith ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr); 43497b48c8fSBarry Smith ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 43597b48c8fSBarry Smith for (i=0; i<slen; i++) { 43697b48c8fSBarry Smith bb[lrows[i]] = diag*xx[lrows[i]]; 43797b48c8fSBarry Smith } 43897b48c8fSBarry Smith ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr); 43997b48c8fSBarry Smith ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 44097b48c8fSBarry Smith } 44197b48c8fSBarry Smith 4428965ea79SLois Curfman McInnes /* actually zap the local rows */ 443b9679d65SBarry Smith ierr = MatZeroRows(l->A,slen,lrows,0.0,0,0);CHKERRQ(ierr); 444e2eb51b1SBarry Smith if (diag != 0.0) { 445b9679d65SBarry Smith Mat_SeqDense *ll = (Mat_SeqDense*)l->A->data; 446b9679d65SBarry Smith PetscInt m = ll->lda, i; 447b9679d65SBarry Smith 448b9679d65SBarry Smith for (i=0; i<slen; i++) { 449b9679d65SBarry Smith ll->v[lrows[i] + m*(A->cmap->rstart + lrows[i])] = diag; 450b9679d65SBarry Smith } 451b9679d65SBarry Smith } 452606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 4538965ea79SLois Curfman McInnes 4548965ea79SLois Curfman McInnes /* wait on sends */ 4558965ea79SLois Curfman McInnes if (nsends) { 456785e854fSJed Brown ierr = PetscMalloc1(nsends,&send_status);CHKERRQ(ierr); 457ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 458606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 4598965ea79SLois Curfman McInnes } 460606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 461606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 4623a40ed3dSBarry Smith PetscFunctionReturn(0); 4638965ea79SLois Curfman McInnes } 4648965ea79SLois Curfman McInnes 4654a2ae208SSatish Balay #undef __FUNCT__ 4664a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIDense" 467dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4688965ea79SLois Curfman McInnes { 46939ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 470dfbe8321SBarry Smith PetscErrorCode ierr; 471c456f294SBarry Smith 4723a40ed3dSBarry Smith PetscFunctionBegin; 473ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 474ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 47544cd7ae7SLois Curfman McInnes ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy);CHKERRQ(ierr); 4763a40ed3dSBarry Smith PetscFunctionReturn(0); 4778965ea79SLois Curfman McInnes } 4788965ea79SLois Curfman McInnes 4794a2ae208SSatish Balay #undef __FUNCT__ 4804a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIDense" 481dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4828965ea79SLois Curfman McInnes { 48339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 484dfbe8321SBarry Smith PetscErrorCode ierr; 485c456f294SBarry Smith 4863a40ed3dSBarry Smith PetscFunctionBegin; 487ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 488ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 48944cd7ae7SLois Curfman McInnes ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr); 4903a40ed3dSBarry Smith PetscFunctionReturn(0); 4918965ea79SLois Curfman McInnes } 4928965ea79SLois Curfman McInnes 4934a2ae208SSatish Balay #undef __FUNCT__ 4944a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIDense" 495dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 496096963f5SLois Curfman McInnes { 497096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 498dfbe8321SBarry Smith PetscErrorCode ierr; 49987828ca2SBarry Smith PetscScalar zero = 0.0; 500096963f5SLois Curfman McInnes 5013a40ed3dSBarry Smith PetscFunctionBegin; 5022dcb1b2aSMatthew Knepley ierr = VecSet(yy,zero);CHKERRQ(ierr); 5037c922b88SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 504ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 505ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 5063a40ed3dSBarry Smith PetscFunctionReturn(0); 507096963f5SLois Curfman McInnes } 508096963f5SLois Curfman McInnes 5094a2ae208SSatish Balay #undef __FUNCT__ 5104a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIDense" 511dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 512096963f5SLois Curfman McInnes { 513096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 514dfbe8321SBarry Smith PetscErrorCode ierr; 515096963f5SLois Curfman McInnes 5163a40ed3dSBarry Smith PetscFunctionBegin; 5173501a2bdSLois Curfman McInnes ierr = VecCopy(yy,zz);CHKERRQ(ierr); 5187c922b88SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 519ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 520ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 5213a40ed3dSBarry Smith PetscFunctionReturn(0); 522096963f5SLois Curfman McInnes } 523096963f5SLois Curfman McInnes 5244a2ae208SSatish Balay #undef __FUNCT__ 5254a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIDense" 526dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5278965ea79SLois Curfman McInnes { 52839ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 529096963f5SLois Curfman McInnes Mat_SeqDense *aloc = (Mat_SeqDense*)a->A->data; 530dfbe8321SBarry Smith PetscErrorCode ierr; 531d0f46423SBarry Smith PetscInt len,i,n,m = A->rmap->n,radd; 53287828ca2SBarry Smith PetscScalar *x,zero = 0.0; 533ed3cc1f0SBarry Smith 5343a40ed3dSBarry Smith PetscFunctionBegin; 5352dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 5361ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 537096963f5SLois Curfman McInnes ierr = VecGetSize(v,&n);CHKERRQ(ierr); 538e32f2f54SBarry Smith if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 539d0f46423SBarry Smith len = PetscMin(a->A->rmap->n,a->A->cmap->n); 540d0f46423SBarry Smith radd = A->rmap->rstart*m; 54144cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 542096963f5SLois Curfman McInnes x[i] = aloc->v[radd + i*m + i]; 543096963f5SLois Curfman McInnes } 5441ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 5453a40ed3dSBarry Smith PetscFunctionReturn(0); 5468965ea79SLois Curfman McInnes } 5478965ea79SLois Curfman McInnes 5484a2ae208SSatish Balay #undef __FUNCT__ 5494a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIDense" 550dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5518965ea79SLois Curfman McInnes { 5523501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 553dfbe8321SBarry Smith PetscErrorCode ierr; 554ed3cc1f0SBarry Smith 5553a40ed3dSBarry Smith PetscFunctionBegin; 556aa482453SBarry Smith #if defined(PETSC_USE_LOG) 557d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N); 5588965ea79SLois Curfman McInnes #endif 5598798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 5606bf464f9SBarry Smith ierr = MatDestroy(&mdn->A);CHKERRQ(ierr); 5616bf464f9SBarry Smith ierr = VecDestroy(&mdn->lvec);CHKERRQ(ierr); 5626bf464f9SBarry Smith ierr = VecScatterDestroy(&mdn->Mvctx);CHKERRQ(ierr); 56301b82886SBarry Smith 564bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 565dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 566bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr); 567bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL);CHKERRQ(ierr); 568bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 569bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 570bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5713a40ed3dSBarry Smith PetscFunctionReturn(0); 5728965ea79SLois Curfman McInnes } 57339ddd567SLois Curfman McInnes 5744a2ae208SSatish Balay #undef __FUNCT__ 5754a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_Binary" 5766849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_Binary(Mat mat,PetscViewer viewer) 5778965ea79SLois Curfman McInnes { 57839ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 579dfbe8321SBarry Smith PetscErrorCode ierr; 580aa05aa95SBarry Smith PetscViewerFormat format; 581aa05aa95SBarry Smith int fd; 582d0f46423SBarry Smith PetscInt header[4],mmax,N = mat->cmap->N,i,j,m,k; 583aa05aa95SBarry Smith PetscMPIInt rank,tag = ((PetscObject)viewer)->tag,size; 584578230a0SSatish Balay PetscScalar *work,*v,*vv; 585aa05aa95SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)mdn->A->data; 5867056b6fcSBarry Smith 5873a40ed3dSBarry Smith PetscFunctionBegin; 58839ddd567SLois Curfman McInnes if (mdn->size == 1) { 58939ddd567SLois Curfman McInnes ierr = MatView(mdn->A,viewer);CHKERRQ(ierr); 590aa05aa95SBarry Smith } else { 591aa05aa95SBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 592ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 593ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr); 594aa05aa95SBarry Smith 595aa05aa95SBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 596f4403165SShri Abhyankar if (format == PETSC_VIEWER_NATIVE) { 597aa05aa95SBarry Smith 598aa05aa95SBarry Smith if (!rank) { 599aa05aa95SBarry Smith /* store the matrix as a dense matrix */ 6000700a824SBarry Smith header[0] = MAT_FILE_CLASSID; 601d0f46423SBarry Smith header[1] = mat->rmap->N; 602aa05aa95SBarry Smith header[2] = N; 603aa05aa95SBarry Smith header[3] = MATRIX_BINARY_FORMAT_DENSE; 604aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 605aa05aa95SBarry Smith 606aa05aa95SBarry Smith /* get largest work array needed for transposing array */ 607d0f46423SBarry Smith mmax = mat->rmap->n; 608aa05aa95SBarry Smith for (i=1; i<size; i++) { 609d0f46423SBarry Smith mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]); 6108965ea79SLois Curfman McInnes } 611785e854fSJed Brown ierr = PetscMalloc1(mmax*N,&work);CHKERRQ(ierr); 612aa05aa95SBarry Smith 613aa05aa95SBarry Smith /* write out local array, by rows */ 614d0f46423SBarry Smith m = mat->rmap->n; 615aa05aa95SBarry Smith v = a->v; 616aa05aa95SBarry Smith for (j=0; j<N; j++) { 617aa05aa95SBarry Smith for (i=0; i<m; i++) { 618578230a0SSatish Balay work[j + i*N] = *v++; 619aa05aa95SBarry Smith } 620aa05aa95SBarry Smith } 621aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 622aa05aa95SBarry Smith /* get largest work array to receive messages from other processes, excludes process zero */ 623aa05aa95SBarry Smith mmax = 0; 624aa05aa95SBarry Smith for (i=1; i<size; i++) { 625d0f46423SBarry Smith mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]); 626aa05aa95SBarry Smith } 627785e854fSJed Brown ierr = PetscMalloc1(mmax*N,&vv);CHKERRQ(ierr); 628aa05aa95SBarry Smith for (k = 1; k < size; k++) { 629f8009846SMatthew Knepley v = vv; 630d0f46423SBarry Smith m = mat->rmap->range[k+1] - mat->rmap->range[k]; 631ce94432eSBarry Smith ierr = MPIULong_Recv(v,m*N,MPIU_SCALAR,k,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 632aa05aa95SBarry Smith 633aa05aa95SBarry Smith for (j = 0; j < N; j++) { 634aa05aa95SBarry Smith for (i = 0; i < m; i++) { 635578230a0SSatish Balay work[j + i*N] = *v++; 636aa05aa95SBarry Smith } 637aa05aa95SBarry Smith } 638aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 639aa05aa95SBarry Smith } 640aa05aa95SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 641578230a0SSatish Balay ierr = PetscFree(vv);CHKERRQ(ierr); 642aa05aa95SBarry Smith } else { 643ce94432eSBarry Smith ierr = MPIULong_Send(a->v,mat->rmap->n*mat->cmap->N,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 644aa05aa95SBarry Smith } 645eb3f98d2SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"To store a parallel dense matrix you must first call PetscViewerSetFormat(viewer,PETSC_VIEWER_NATIVE)"); 646aa05aa95SBarry Smith } 6473a40ed3dSBarry Smith PetscFunctionReturn(0); 6488965ea79SLois Curfman McInnes } 6498965ea79SLois Curfman McInnes 6509804daf3SBarry Smith #include <petscdraw.h> 6514a2ae208SSatish Balay #undef __FUNCT__ 6524a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_ASCIIorDraworSocket" 6536849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 6548965ea79SLois Curfman McInnes { 65539ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 656dfbe8321SBarry Smith PetscErrorCode ierr; 65732dcc486SBarry Smith PetscMPIInt size = mdn->size,rank = mdn->rank; 65819fd82e9SBarry Smith PetscViewerType vtype; 659ace3abfcSBarry Smith PetscBool iascii,isdraw; 660b0a32e0cSBarry Smith PetscViewer sviewer; 661f3ef73ceSBarry Smith PetscViewerFormat format; 6628965ea79SLois Curfman McInnes 6633a40ed3dSBarry Smith PetscFunctionBegin; 664251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 665251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 66632077d6dSBarry Smith if (iascii) { 667b0a32e0cSBarry Smith ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr); 668b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 669456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6704e220ebcSLois Curfman McInnes MatInfo info; 671888f2ed8SSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 6727b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr); 6737b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr); 674b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6757b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr); 6765d00a290SHong Zhang ierr = VecScatterView(mdn->Mvctx,viewer);CHKERRQ(ierr); 6773a40ed3dSBarry Smith PetscFunctionReturn(0); 678fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6793a40ed3dSBarry Smith PetscFunctionReturn(0); 6808965ea79SLois Curfman McInnes } 681f1af5d2fSBarry Smith } else if (isdraw) { 682b0a32e0cSBarry Smith PetscDraw draw; 683ace3abfcSBarry Smith PetscBool isnull; 684f1af5d2fSBarry Smith 685b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 686b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 687f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 688f1af5d2fSBarry Smith } 68977ed5343SBarry Smith 6908965ea79SLois Curfman McInnes if (size == 1) { 69139ddd567SLois Curfman McInnes ierr = MatView(mdn->A,viewer);CHKERRQ(ierr); 6923a40ed3dSBarry Smith } else { 6938965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 6948965ea79SLois Curfman McInnes Mat A; 695d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz; 696ba8c8a56SBarry Smith PetscInt *cols; 697ba8c8a56SBarry Smith PetscScalar *vals; 6988965ea79SLois Curfman McInnes 699ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 7008965ea79SLois Curfman McInnes if (!rank) { 701f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 7023a40ed3dSBarry Smith } else { 703f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 7048965ea79SLois Curfman McInnes } 7057adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 706878740d9SKris Buschelman ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr); 7070298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr); 7083bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 7098965ea79SLois Curfman McInnes 71039ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 71139ddd567SLois Curfman McInnes but it's quick for now */ 71251022da4SBarry Smith A->insertmode = INSERT_VALUES; 7132205254eSKarl Rupp 7142205254eSKarl Rupp row = mat->rmap->rstart; 7152205254eSKarl Rupp m = mdn->A->rmap->n; 7168965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 717ba8c8a56SBarry Smith ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 718ba8c8a56SBarry Smith ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 719ba8c8a56SBarry Smith ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 72039ddd567SLois Curfman McInnes row++; 7218965ea79SLois Curfman McInnes } 7228965ea79SLois Curfman McInnes 7236d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7246d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 725b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 726b9b97703SBarry Smith if (!rank) { 7277566de4bSShri Abhyankar ierr = PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 7287566de4bSShri Abhyankar /* Set the type name to MATMPIDense so that the correct type can be printed out by PetscObjectPrintClassNamePrefixType() in MatView_SeqDense_ASCII()*/ 729dd2fa690SBarry Smith ierr = PetscStrcpy(((PetscObject)((Mat_MPIDense*)(A->data))->A)->type_name,MATMPIDENSE);CHKERRQ(ierr); 7306831982aSBarry Smith ierr = MatView(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr); 7318965ea79SLois Curfman McInnes } 732b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 733b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 7346bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 7358965ea79SLois Curfman McInnes } 7363a40ed3dSBarry Smith PetscFunctionReturn(0); 7378965ea79SLois Curfman McInnes } 7388965ea79SLois Curfman McInnes 7394a2ae208SSatish Balay #undef __FUNCT__ 7404a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense" 741dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 7428965ea79SLois Curfman McInnes { 743dfbe8321SBarry Smith PetscErrorCode ierr; 744ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw,issocket; 7458965ea79SLois Curfman McInnes 746433994e6SBarry Smith PetscFunctionBegin; 747251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 748251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 749251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 750251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 7510f5bd95cSBarry Smith 75232077d6dSBarry Smith if (iascii || issocket || isdraw) { 753f1af5d2fSBarry Smith ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 7540f5bd95cSBarry Smith } else if (isbinary) { 7553a40ed3dSBarry Smith ierr = MatView_MPIDense_Binary(mat,viewer);CHKERRQ(ierr); 75611aeaf0aSBarry Smith } 7573a40ed3dSBarry Smith PetscFunctionReturn(0); 7588965ea79SLois Curfman McInnes } 7598965ea79SLois Curfman McInnes 7604a2ae208SSatish Balay #undef __FUNCT__ 7614a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIDense" 762dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 7638965ea79SLois Curfman McInnes { 7643501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7653501a2bdSLois Curfman McInnes Mat mdn = mat->A; 766dfbe8321SBarry Smith PetscErrorCode ierr; 767329f5518SBarry Smith PetscReal isend[5],irecv[5]; 7688965ea79SLois Curfman McInnes 7693a40ed3dSBarry Smith PetscFunctionBegin; 7704e220ebcSLois Curfman McInnes info->block_size = 1.0; 7712205254eSKarl Rupp 7724e220ebcSLois Curfman McInnes ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr); 7732205254eSKarl Rupp 7744e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 7754e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 7768965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7774e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7784e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7794e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7804e220ebcSLois Curfman McInnes info->memory = isend[3]; 7814e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7828965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 783ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 7842205254eSKarl Rupp 7854e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7864e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7874e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7884e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7894e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7908965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 791ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 7922205254eSKarl Rupp 7934e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7944e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7954e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7964e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7974e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7988965ea79SLois Curfman McInnes } 7994e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 8004e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 8014e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 8023a40ed3dSBarry Smith PetscFunctionReturn(0); 8038965ea79SLois Curfman McInnes } 8048965ea79SLois Curfman McInnes 8054a2ae208SSatish Balay #undef __FUNCT__ 8064a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIDense" 807ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg) 8088965ea79SLois Curfman McInnes { 80939ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 810dfbe8321SBarry Smith PetscErrorCode ierr; 8118965ea79SLois Curfman McInnes 8123a40ed3dSBarry Smith PetscFunctionBegin; 81312c028f9SKris Buschelman switch (op) { 814512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 81512c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 81612c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 8174e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 81812c028f9SKris Buschelman break; 81912c028f9SKris Buschelman case MAT_ROW_ORIENTED: 8204e0d8c25SBarry Smith a->roworiented = flg; 8212205254eSKarl Rupp 8224e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 82312c028f9SKris Buschelman break; 8244e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 82513fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 82612c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 827290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 82812c028f9SKris Buschelman break; 82912c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 8304e0d8c25SBarry Smith a->donotstash = flg; 83112c028f9SKris Buschelman break; 83277e54ba9SKris Buschelman case MAT_SYMMETRIC: 83377e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 8349a4540c5SBarry Smith case MAT_HERMITIAN: 8359a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 836600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 837290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 83877e54ba9SKris Buschelman break; 83912c028f9SKris Buschelman default: 840e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 8413a40ed3dSBarry Smith } 8423a40ed3dSBarry Smith PetscFunctionReturn(0); 8438965ea79SLois Curfman McInnes } 8448965ea79SLois Curfman McInnes 8458965ea79SLois Curfman McInnes 8464a2ae208SSatish Balay #undef __FUNCT__ 8474a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIDense" 848dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 8495b2fa520SLois Curfman McInnes { 8505b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 8515b2fa520SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 85287828ca2SBarry Smith PetscScalar *l,*r,x,*v; 853dfbe8321SBarry Smith PetscErrorCode ierr; 854d0f46423SBarry Smith PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n; 8555b2fa520SLois Curfman McInnes 8565b2fa520SLois Curfman McInnes PetscFunctionBegin; 85772d926a5SLois Curfman McInnes ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr); 8585b2fa520SLois Curfman McInnes if (ll) { 85972d926a5SLois Curfman McInnes ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr); 860e32f2f54SBarry Smith if (s2a != s2) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %d != %d.", s2a, s2); 8611ebc52fbSHong Zhang ierr = VecGetArray(ll,&l);CHKERRQ(ierr); 8625b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 8635b2fa520SLois Curfman McInnes x = l[i]; 8645b2fa520SLois Curfman McInnes v = mat->v + i; 8655b2fa520SLois Curfman McInnes for (j=0; j<n; j++) { (*v) *= x; v+= m;} 8665b2fa520SLois Curfman McInnes } 8671ebc52fbSHong Zhang ierr = VecRestoreArray(ll,&l);CHKERRQ(ierr); 868efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 8695b2fa520SLois Curfman McInnes } 8705b2fa520SLois Curfman McInnes if (rr) { 871175be7b4SMatthew Knepley ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr); 872e32f2f54SBarry Smith if (s3a != s3) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3); 873ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 874ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 8751ebc52fbSHong Zhang ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr); 8765b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 8775b2fa520SLois Curfman McInnes x = r[i]; 8785b2fa520SLois Curfman McInnes v = mat->v + i*m; 8792205254eSKarl Rupp for (j=0; j<m; j++) (*v++) *= x; 8805b2fa520SLois Curfman McInnes } 8811ebc52fbSHong Zhang ierr = VecRestoreArray(mdn->lvec,&r);CHKERRQ(ierr); 882efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 8835b2fa520SLois Curfman McInnes } 8845b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8855b2fa520SLois Curfman McInnes } 8865b2fa520SLois Curfman McInnes 8874a2ae208SSatish Balay #undef __FUNCT__ 8884a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIDense" 889dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 890096963f5SLois Curfman McInnes { 8913501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 8923501a2bdSLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 893dfbe8321SBarry Smith PetscErrorCode ierr; 89413f74950SBarry Smith PetscInt i,j; 895329f5518SBarry Smith PetscReal sum = 0.0; 89687828ca2SBarry Smith PetscScalar *v = mat->v; 8973501a2bdSLois Curfman McInnes 8983a40ed3dSBarry Smith PetscFunctionBegin; 8993501a2bdSLois Curfman McInnes if (mdn->size == 1) { 900064f8208SBarry Smith ierr = MatNorm(mdn->A,type,nrm);CHKERRQ(ierr); 9013501a2bdSLois Curfman McInnes } else { 9023501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 903d0f46423SBarry Smith for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) { 904329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 9053501a2bdSLois Curfman McInnes } 906ce94432eSBarry Smith ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 9078f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 908dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr); 9093a40ed3dSBarry Smith } else if (type == NORM_1) { 910329f5518SBarry Smith PetscReal *tmp,*tmp2; 911dcca6d9dSJed Brown ierr = PetscMalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2);CHKERRQ(ierr); 91274ed9c26SBarry Smith ierr = PetscMemzero(tmp,A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 91374ed9c26SBarry Smith ierr = PetscMemzero(tmp2,A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 914064f8208SBarry Smith *nrm = 0.0; 9153501a2bdSLois Curfman McInnes v = mat->v; 916d0f46423SBarry Smith for (j=0; j<mdn->A->cmap->n; j++) { 917d0f46423SBarry Smith for (i=0; i<mdn->A->rmap->n; i++) { 91867e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 9193501a2bdSLois Curfman McInnes } 9203501a2bdSLois Curfman McInnes } 921ce94432eSBarry Smith ierr = MPI_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 922d0f46423SBarry Smith for (j=0; j<A->cmap->N; j++) { 923064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 9243501a2bdSLois Curfman McInnes } 92574ed9c26SBarry Smith ierr = PetscFree2(tmp,tmp);CHKERRQ(ierr); 926d0f46423SBarry Smith ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr); 9273a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 928329f5518SBarry Smith PetscReal ntemp; 9293501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr); 930ce94432eSBarry Smith ierr = MPI_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 931ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm"); 9323501a2bdSLois Curfman McInnes } 9333a40ed3dSBarry Smith PetscFunctionReturn(0); 9343501a2bdSLois Curfman McInnes } 9353501a2bdSLois Curfman McInnes 9364a2ae208SSatish Balay #undef __FUNCT__ 9374a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIDense" 938fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 9393501a2bdSLois Curfman McInnes { 9403501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 9413501a2bdSLois Curfman McInnes Mat_SeqDense *Aloc = (Mat_SeqDense*)a->A->data; 9423501a2bdSLois Curfman McInnes Mat B; 943d0f46423SBarry Smith PetscInt M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart; 9446849ba73SBarry Smith PetscErrorCode ierr; 94513f74950SBarry Smith PetscInt j,i; 94687828ca2SBarry Smith PetscScalar *v; 9473501a2bdSLois Curfman McInnes 9483a40ed3dSBarry Smith PetscFunctionBegin; 949ce94432eSBarry Smith if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Supports square matrix only in-place"); 950fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX || A == *matout) { 951ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 952d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 9537adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 9540298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(B,NULL);CHKERRQ(ierr); 955fc4dec0aSBarry Smith } else { 956fc4dec0aSBarry Smith B = *matout; 957fc4dec0aSBarry Smith } 9583501a2bdSLois Curfman McInnes 959d0f46423SBarry Smith m = a->A->rmap->n; n = a->A->cmap->n; v = Aloc->v; 960785e854fSJed Brown ierr = PetscMalloc1(m,&rwork);CHKERRQ(ierr); 9613501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 9621acff37aSSatish Balay for (j=0; j<n; j++) { 9633501a2bdSLois Curfman McInnes ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr); 9643501a2bdSLois Curfman McInnes v += m; 9653501a2bdSLois Curfman McInnes } 966606d414cSSatish Balay ierr = PetscFree(rwork);CHKERRQ(ierr); 9676d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9686d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 969815cbec1SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout != A) { 9703501a2bdSLois Curfman McInnes *matout = B; 9713501a2bdSLois Curfman McInnes } else { 972eb6b5d47SBarry Smith ierr = MatHeaderMerge(A,B);CHKERRQ(ierr); 9733501a2bdSLois Curfman McInnes } 9743a40ed3dSBarry Smith PetscFunctionReturn(0); 975096963f5SLois Curfman McInnes } 976096963f5SLois Curfman McInnes 97744cd7ae7SLois Curfman McInnes 9786849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*); 979d84338a6SBarry Smith extern PetscErrorCode MatScale_MPIDense(Mat,PetscScalar); 9808965ea79SLois Curfman McInnes 9814a2ae208SSatish Balay #undef __FUNCT__ 9824994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPIDense" 9834994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A) 984273d9f13SBarry Smith { 985dfbe8321SBarry Smith PetscErrorCode ierr; 986273d9f13SBarry Smith 987273d9f13SBarry Smith PetscFunctionBegin; 988273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr); 989273d9f13SBarry Smith PetscFunctionReturn(0); 990273d9f13SBarry Smith } 991273d9f13SBarry Smith 99230716080SHong Zhang #undef __FUNCT__ 993488007eeSBarry Smith #define __FUNCT__ "MatAXPY_MPIDense" 994488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 995488007eeSBarry Smith { 996488007eeSBarry Smith PetscErrorCode ierr; 997488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data; 998488007eeSBarry Smith 999488007eeSBarry Smith PetscFunctionBegin; 1000488007eeSBarry Smith ierr = MatAXPY(A->A,alpha,B->A,str);CHKERRQ(ierr); 1001*a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 1002488007eeSBarry Smith PetscFunctionReturn(0); 1003488007eeSBarry Smith } 1004488007eeSBarry Smith 1005ba337c44SJed Brown #undef __FUNCT__ 1006ba337c44SJed Brown #define __FUNCT__ "MatConjugate_MPIDense" 10077087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat) 1008ba337c44SJed Brown { 1009ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 1010ba337c44SJed Brown PetscErrorCode ierr; 1011ba337c44SJed Brown 1012ba337c44SJed Brown PetscFunctionBegin; 1013ba337c44SJed Brown ierr = MatConjugate(a->A);CHKERRQ(ierr); 1014ba337c44SJed Brown PetscFunctionReturn(0); 1015ba337c44SJed Brown } 1016ba337c44SJed Brown 1017ba337c44SJed Brown #undef __FUNCT__ 1018ba337c44SJed Brown #define __FUNCT__ "MatRealPart_MPIDense" 1019ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A) 1020ba337c44SJed Brown { 1021ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1022ba337c44SJed Brown PetscErrorCode ierr; 1023ba337c44SJed Brown 1024ba337c44SJed Brown PetscFunctionBegin; 1025ba337c44SJed Brown ierr = MatRealPart(a->A);CHKERRQ(ierr); 1026ba337c44SJed Brown PetscFunctionReturn(0); 1027ba337c44SJed Brown } 1028ba337c44SJed Brown 1029ba337c44SJed Brown #undef __FUNCT__ 1030ba337c44SJed Brown #define __FUNCT__ "MatImaginaryPart_MPIDense" 1031ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 1032ba337c44SJed Brown { 1033ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1034ba337c44SJed Brown PetscErrorCode ierr; 1035ba337c44SJed Brown 1036ba337c44SJed Brown PetscFunctionBegin; 1037ba337c44SJed Brown ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 1038ba337c44SJed Brown PetscFunctionReturn(0); 1039ba337c44SJed Brown } 1040ba337c44SJed Brown 10410716a85fSBarry Smith extern PetscErrorCode MatGetColumnNorms_SeqDense(Mat,NormType,PetscReal*); 10420716a85fSBarry Smith #undef __FUNCT__ 10430716a85fSBarry Smith #define __FUNCT__ "MatGetColumnNorms_MPIDense" 10440716a85fSBarry Smith PetscErrorCode MatGetColumnNorms_MPIDense(Mat A,NormType type,PetscReal *norms) 10450716a85fSBarry Smith { 10460716a85fSBarry Smith PetscErrorCode ierr; 10470716a85fSBarry Smith PetscInt i,n; 10480716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*) A->data; 10490716a85fSBarry Smith PetscReal *work; 10500716a85fSBarry Smith 10510716a85fSBarry Smith PetscFunctionBegin; 10520298fd71SBarry Smith ierr = MatGetSize(A,NULL,&n);CHKERRQ(ierr); 1053785e854fSJed Brown ierr = PetscMalloc1(n,&work);CHKERRQ(ierr); 10540716a85fSBarry Smith ierr = MatGetColumnNorms_SeqDense(a->A,type,work);CHKERRQ(ierr); 10550716a85fSBarry Smith if (type == NORM_2) { 10560716a85fSBarry Smith for (i=0; i<n; i++) work[i] *= work[i]; 10570716a85fSBarry Smith } 10580716a85fSBarry Smith if (type == NORM_INFINITY) { 10590716a85fSBarry Smith ierr = MPI_Allreduce(work,norms,n,MPIU_REAL,MPIU_MAX,A->hdr.comm);CHKERRQ(ierr); 10600716a85fSBarry Smith } else { 10610716a85fSBarry Smith ierr = MPI_Allreduce(work,norms,n,MPIU_REAL,MPIU_SUM,A->hdr.comm);CHKERRQ(ierr); 10620716a85fSBarry Smith } 10630716a85fSBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 10640716a85fSBarry Smith if (type == NORM_2) { 10658f1a2a5eSBarry Smith for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]); 10660716a85fSBarry Smith } 10670716a85fSBarry Smith PetscFunctionReturn(0); 10680716a85fSBarry Smith } 10690716a85fSBarry Smith 107073a71a0fSBarry Smith #undef __FUNCT__ 107173a71a0fSBarry Smith #define __FUNCT__ "MatSetRandom_MPIDense" 107273a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx) 107373a71a0fSBarry Smith { 107473a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense*)x->data; 107573a71a0fSBarry Smith PetscErrorCode ierr; 107673a71a0fSBarry Smith PetscScalar *a; 107773a71a0fSBarry Smith PetscInt m,n,i; 107873a71a0fSBarry Smith 107973a71a0fSBarry Smith PetscFunctionBegin; 108073a71a0fSBarry Smith ierr = MatGetSize(d->A,&m,&n);CHKERRQ(ierr); 10818c778c55SBarry Smith ierr = MatDenseGetArray(d->A,&a);CHKERRQ(ierr); 108273a71a0fSBarry Smith for (i=0; i<m*n; i++) { 108373a71a0fSBarry Smith ierr = PetscRandomGetValue(rctx,a+i);CHKERRQ(ierr); 108473a71a0fSBarry Smith } 10858c778c55SBarry Smith ierr = MatDenseRestoreArray(d->A,&a);CHKERRQ(ierr); 108673a71a0fSBarry Smith PetscFunctionReturn(0); 108773a71a0fSBarry Smith } 108873a71a0fSBarry Smith 10898965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 109009dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense, 109109dc0095SBarry Smith MatGetRow_MPIDense, 109209dc0095SBarry Smith MatRestoreRow_MPIDense, 109309dc0095SBarry Smith MatMult_MPIDense, 109497304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 10957c922b88SBarry Smith MatMultTranspose_MPIDense, 10967c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 10978965ea79SLois Curfman McInnes 0, 109809dc0095SBarry Smith 0, 109909dc0095SBarry Smith 0, 110097304618SKris Buschelman /* 10*/ 0, 110109dc0095SBarry Smith 0, 110209dc0095SBarry Smith 0, 110309dc0095SBarry Smith 0, 110409dc0095SBarry Smith MatTranspose_MPIDense, 110597304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 11066e4ee0c6SHong Zhang MatEqual_MPIDense, 110709dc0095SBarry Smith MatGetDiagonal_MPIDense, 11085b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 110909dc0095SBarry Smith MatNorm_MPIDense, 111097304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 111109dc0095SBarry Smith MatAssemblyEnd_MPIDense, 111209dc0095SBarry Smith MatSetOption_MPIDense, 111309dc0095SBarry Smith MatZeroEntries_MPIDense, 1114d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1115919b68f7SBarry Smith 0, 111601b82886SBarry Smith 0, 111701b82886SBarry Smith 0, 111801b82886SBarry Smith 0, 11194994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1120273d9f13SBarry Smith 0, 112109dc0095SBarry Smith 0, 11228c778c55SBarry Smith 0, 11238c778c55SBarry Smith 0, 1124d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 112509dc0095SBarry Smith 0, 112609dc0095SBarry Smith 0, 112709dc0095SBarry Smith 0, 112809dc0095SBarry Smith 0, 1129d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 11302ce60cd0SSatish Balay MatGetSubMatrices_MPIDense, 113109dc0095SBarry Smith 0, 113209dc0095SBarry Smith MatGetValues_MPIDense, 113309dc0095SBarry Smith 0, 1134d519adbfSMatthew Knepley /* 44*/ 0, 113509dc0095SBarry Smith MatScale_MPIDense, 113609dc0095SBarry Smith 0, 113709dc0095SBarry Smith 0, 113809dc0095SBarry Smith 0, 113973a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 114009dc0095SBarry Smith 0, 114109dc0095SBarry Smith 0, 114209dc0095SBarry Smith 0, 114309dc0095SBarry Smith 0, 1144d519adbfSMatthew Knepley /* 54*/ 0, 114509dc0095SBarry Smith 0, 114609dc0095SBarry Smith 0, 114709dc0095SBarry Smith 0, 114809dc0095SBarry Smith 0, 1149d519adbfSMatthew Knepley /* 59*/ MatGetSubMatrix_MPIDense, 1150b9b97703SBarry Smith MatDestroy_MPIDense, 1151b9b97703SBarry Smith MatView_MPIDense, 1152357abbc8SBarry Smith 0, 115397304618SKris Buschelman 0, 1154d519adbfSMatthew Knepley /* 64*/ 0, 115597304618SKris Buschelman 0, 115697304618SKris Buschelman 0, 115797304618SKris Buschelman 0, 115897304618SKris Buschelman 0, 1159d519adbfSMatthew Knepley /* 69*/ 0, 116097304618SKris Buschelman 0, 116197304618SKris Buschelman 0, 116297304618SKris Buschelman 0, 116397304618SKris Buschelman 0, 1164d519adbfSMatthew Knepley /* 74*/ 0, 116597304618SKris Buschelman 0, 116697304618SKris Buschelman 0, 116797304618SKris Buschelman 0, 116897304618SKris Buschelman 0, 1169d519adbfSMatthew Knepley /* 79*/ 0, 117097304618SKris Buschelman 0, 117197304618SKris Buschelman 0, 117297304618SKris Buschelman 0, 11735bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1174865e5f61SKris Buschelman 0, 1175865e5f61SKris Buschelman 0, 1176865e5f61SKris Buschelman 0, 1177865e5f61SKris Buschelman 0, 1178865e5f61SKris Buschelman 0, 1179d519adbfSMatthew Knepley /* 89*/ 1180865e5f61SKris Buschelman 0, 1181865e5f61SKris Buschelman 0, 1182865e5f61SKris Buschelman 0, 11832fbe02b9SBarry Smith 0, 1184ba337c44SJed Brown 0, 1185d519adbfSMatthew Knepley /* 94*/ 0, 1186865e5f61SKris Buschelman 0, 1187865e5f61SKris Buschelman 0, 1188ba337c44SJed Brown 0, 1189ba337c44SJed Brown 0, 1190ba337c44SJed Brown /* 99*/ 0, 1191ba337c44SJed Brown 0, 1192ba337c44SJed Brown 0, 1193ba337c44SJed Brown MatConjugate_MPIDense, 1194ba337c44SJed Brown 0, 1195ba337c44SJed Brown /*104*/ 0, 1196ba337c44SJed Brown MatRealPart_MPIDense, 1197ba337c44SJed Brown MatImaginaryPart_MPIDense, 119886d161a7SShri Abhyankar 0, 119986d161a7SShri Abhyankar 0, 120086d161a7SShri Abhyankar /*109*/ 0, 120186d161a7SShri Abhyankar 0, 120286d161a7SShri Abhyankar 0, 120386d161a7SShri Abhyankar 0, 120486d161a7SShri Abhyankar 0, 120586d161a7SShri Abhyankar /*114*/ 0, 120686d161a7SShri Abhyankar 0, 120786d161a7SShri Abhyankar 0, 120886d161a7SShri Abhyankar 0, 120986d161a7SShri Abhyankar 0, 121086d161a7SShri Abhyankar /*119*/ 0, 121186d161a7SShri Abhyankar 0, 121286d161a7SShri Abhyankar 0, 12130716a85fSBarry Smith 0, 12140716a85fSBarry Smith 0, 12150716a85fSBarry Smith /*124*/ 0, 12163964eb88SJed Brown MatGetColumnNorms_MPIDense, 12173964eb88SJed Brown 0, 12183964eb88SJed Brown 0, 12193964eb88SJed Brown 0, 12203964eb88SJed Brown /*129*/ 0, 12213964eb88SJed Brown 0, 12223964eb88SJed Brown 0, 12233964eb88SJed Brown 0, 12243964eb88SJed Brown 0, 12253964eb88SJed Brown /*134*/ 0, 12263964eb88SJed Brown 0, 12273964eb88SJed Brown 0, 12283964eb88SJed Brown 0, 12293964eb88SJed Brown 0, 12303964eb88SJed Brown /*139*/ 0, 1231f9426fe0SMark Adams 0, 12323964eb88SJed Brown 0 1233ba337c44SJed Brown }; 12348965ea79SLois Curfman McInnes 12354a2ae208SSatish Balay #undef __FUNCT__ 1236a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIDenseSetPreallocation_MPIDense" 12377087cfbeSBarry Smith PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1238a23d5eceSKris Buschelman { 1239a23d5eceSKris Buschelman Mat_MPIDense *a; 1240dfbe8321SBarry Smith PetscErrorCode ierr; 1241a23d5eceSKris Buschelman 1242a23d5eceSKris Buschelman PetscFunctionBegin; 1243a23d5eceSKris Buschelman mat->preallocated = PETSC_TRUE; 1244a23d5eceSKris Buschelman /* Note: For now, when data is specified above, this assumes the user correctly 1245a23d5eceSKris Buschelman allocates the local dense storage space. We should add error checking. */ 1246a23d5eceSKris Buschelman 1247a23d5eceSKris Buschelman a = (Mat_MPIDense*)mat->data; 124834ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr); 124934ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr); 125034ef9618SShri Abhyankar a->nvec = mat->cmap->n; 125134ef9618SShri Abhyankar 1252f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr); 1253d0f46423SBarry Smith ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr); 12545c5985e7SKris Buschelman ierr = MatSetType(a->A,MATSEQDENSE);CHKERRQ(ierr); 12555c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr); 12563bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 1257a23d5eceSKris Buschelman PetscFunctionReturn(0); 1258a23d5eceSKris Buschelman } 1259a23d5eceSKris Buschelman 1260a23d5eceSKris Buschelman #undef __FUNCT__ 12614a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIDense" 12628cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat) 1263273d9f13SBarry Smith { 1264273d9f13SBarry Smith Mat_MPIDense *a; 1265dfbe8321SBarry Smith PetscErrorCode ierr; 1266273d9f13SBarry Smith 1267273d9f13SBarry Smith PetscFunctionBegin; 1268b00a9115SJed Brown ierr = PetscNewLog(mat,&a);CHKERRQ(ierr); 1269b0a32e0cSBarry Smith mat->data = (void*)a; 1270273d9f13SBarry Smith ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1271273d9f13SBarry Smith 1272273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1273ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&a->rank);CHKERRQ(ierr); 1274ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&a->size);CHKERRQ(ierr); 1275273d9f13SBarry Smith 1276273d9f13SBarry Smith /* build cache for off array entries formed */ 1277273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 12782205254eSKarl Rupp 1279ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash);CHKERRQ(ierr); 1280273d9f13SBarry Smith 1281273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1282273d9f13SBarry Smith a->lvec = 0; 1283273d9f13SBarry Smith a->Mvctx = 0; 1284273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1285273d9f13SBarry Smith 1286bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense);CHKERRQ(ierr); 1287bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense);CHKERRQ(ierr); 12888c778c55SBarry Smith 1289bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPIDense);CHKERRQ(ierr); 1290bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr); 1291bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",MatMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr); 1292bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 1293bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 12948949adfdSHong Zhang 12958949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMult_mpiaij_mpidense_C",MatTransposeMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr); 12968949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",MatTransposeMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 12978949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",MatTransposeMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 129838aed534SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr); 1299273d9f13SBarry Smith PetscFunctionReturn(0); 1300273d9f13SBarry Smith } 1301273d9f13SBarry Smith 1302209238afSKris Buschelman /*MC 1303002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1304209238afSKris Buschelman 1305209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 1306209238afSKris Buschelman and MATMPIDENSE otherwise. 1307209238afSKris Buschelman 1308209238afSKris Buschelman Options Database Keys: 1309209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 1310209238afSKris Buschelman 1311209238afSKris Buschelman Level: beginner 1312209238afSKris Buschelman 131301b82886SBarry Smith 1314209238afSKris Buschelman .seealso: MatCreateMPIDense,MATSEQDENSE,MATMPIDENSE 1315209238afSKris Buschelman M*/ 1316209238afSKris Buschelman 13174a2ae208SSatish Balay #undef __FUNCT__ 13184a2ae208SSatish Balay #define __FUNCT__ "MatMPIDenseSetPreallocation" 1319273d9f13SBarry Smith /*@C 1320273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1321273d9f13SBarry Smith 1322273d9f13SBarry Smith Not collective 1323273d9f13SBarry Smith 1324273d9f13SBarry Smith Input Parameters: 1325273d9f13SBarry Smith . A - the matrix 13260298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL for PETSc 1327273d9f13SBarry Smith to control all matrix memory allocation. 1328273d9f13SBarry Smith 1329273d9f13SBarry Smith Notes: 1330273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 1331273d9f13SBarry Smith storage by columns. 1332273d9f13SBarry Smith 1333273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1334273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 13350298fd71SBarry Smith set data=NULL. 1336273d9f13SBarry Smith 1337273d9f13SBarry Smith Level: intermediate 1338273d9f13SBarry Smith 1339273d9f13SBarry Smith .keywords: matrix,dense, parallel 1340273d9f13SBarry Smith 1341273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 1342273d9f13SBarry Smith @*/ 13437087cfbeSBarry Smith PetscErrorCode MatMPIDenseSetPreallocation(Mat mat,PetscScalar *data) 1344273d9f13SBarry Smith { 13454ac538c5SBarry Smith PetscErrorCode ierr; 1346273d9f13SBarry Smith 1347273d9f13SBarry Smith PetscFunctionBegin; 13484ac538c5SBarry Smith ierr = PetscTryMethod(mat,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(mat,data));CHKERRQ(ierr); 1349273d9f13SBarry Smith PetscFunctionReturn(0); 1350273d9f13SBarry Smith } 1351273d9f13SBarry Smith 13524a2ae208SSatish Balay #undef __FUNCT__ 135369b1f4b7SBarry Smith #define __FUNCT__ "MatCreateDense" 13548965ea79SLois Curfman McInnes /*@C 135569b1f4b7SBarry Smith MatCreateDense - Creates a parallel matrix in dense format. 13568965ea79SLois Curfman McInnes 1357db81eaa0SLois Curfman McInnes Collective on MPI_Comm 1358db81eaa0SLois Curfman McInnes 13598965ea79SLois Curfman McInnes Input Parameters: 1360db81eaa0SLois Curfman McInnes + comm - MPI communicator 13618965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1362db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 13638965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 1364db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 13650298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL (NULL_SCALAR for Fortran users) for PETSc 1366dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 13678965ea79SLois Curfman McInnes 13688965ea79SLois Curfman McInnes Output Parameter: 1369477f1c0bSLois Curfman McInnes . A - the matrix 13708965ea79SLois Curfman McInnes 1371b259b22eSLois Curfman McInnes Notes: 137239ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 137339ddd567SLois Curfman McInnes storage by columns. 13748965ea79SLois Curfman McInnes 137518f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 137618f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 13770298fd71SBarry Smith set data=NULL (NULL_SCALAR for Fortran users). 137818f449edSLois Curfman McInnes 13798965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 13808965ea79SLois Curfman McInnes (possibly both). 13818965ea79SLois Curfman McInnes 1382027ccd11SLois Curfman McInnes Level: intermediate 1383027ccd11SLois Curfman McInnes 138439ddd567SLois Curfman McInnes .keywords: matrix,dense, parallel 13858965ea79SLois Curfman McInnes 138639ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 13878965ea79SLois Curfman McInnes @*/ 138869b1f4b7SBarry Smith PetscErrorCode MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 13898965ea79SLois Curfman McInnes { 13906849ba73SBarry Smith PetscErrorCode ierr; 139113f74950SBarry Smith PetscMPIInt size; 13928965ea79SLois Curfman McInnes 13933a40ed3dSBarry Smith PetscFunctionBegin; 1394f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 1395f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 1396273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1397273d9f13SBarry Smith if (size > 1) { 1398273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr); 1399273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr); 1400273d9f13SBarry Smith } else { 1401273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 1402273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 14038c469469SLois Curfman McInnes } 14043a40ed3dSBarry Smith PetscFunctionReturn(0); 14058965ea79SLois Curfman McInnes } 14068965ea79SLois Curfman McInnes 14074a2ae208SSatish Balay #undef __FUNCT__ 14084a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIDense" 14096849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 14108965ea79SLois Curfman McInnes { 14118965ea79SLois Curfman McInnes Mat mat; 14123501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 1413dfbe8321SBarry Smith PetscErrorCode ierr; 14148965ea79SLois Curfman McInnes 14153a40ed3dSBarry Smith PetscFunctionBegin; 14168965ea79SLois Curfman McInnes *newmat = 0; 1417ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&mat);CHKERRQ(ierr); 1418d0f46423SBarry Smith ierr = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 14197adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr); 1420834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 1421e04c1aa4SHong Zhang ierr = PetscMemcpy(mat->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 14225aa7edbeSHong Zhang 1423d5f3da31SBarry Smith mat->factortype = A->factortype; 1424c456f294SBarry Smith mat->assembled = PETSC_TRUE; 1425273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 14268965ea79SLois Curfman McInnes 14278965ea79SLois Curfman McInnes a->size = oldmat->size; 14288965ea79SLois Curfman McInnes a->rank = oldmat->rank; 1429e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 1430b9b97703SBarry Smith a->nvec = oldmat->nvec; 14313782ba37SSatish Balay a->donotstash = oldmat->donotstash; 1432e04c1aa4SHong Zhang 14331e1e43feSBarry Smith ierr = PetscLayoutReference(A->rmap,&mat->rmap);CHKERRQ(ierr); 14341e1e43feSBarry Smith ierr = PetscLayoutReference(A->cmap,&mat->cmap);CHKERRQ(ierr); 14358965ea79SLois Curfman McInnes 1436329f5518SBarry Smith ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 14375609ef8eSBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 14383bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 143901b82886SBarry Smith 14408965ea79SLois Curfman McInnes *newmat = mat; 14413a40ed3dSBarry Smith PetscFunctionReturn(0); 14428965ea79SLois Curfman McInnes } 14438965ea79SLois Curfman McInnes 14444a2ae208SSatish Balay #undef __FUNCT__ 14455bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPIDense_DenseInFile" 14465bba2384SShri Abhyankar PetscErrorCode MatLoad_MPIDense_DenseInFile(MPI_Comm comm,PetscInt fd,PetscInt M,PetscInt N,Mat newmat,PetscInt sizesset) 144786d161a7SShri Abhyankar { 144886d161a7SShri Abhyankar PetscErrorCode ierr; 144986d161a7SShri Abhyankar PetscMPIInt rank,size; 145086d161a7SShri Abhyankar PetscInt *rowners,i,m,nz,j; 145186d161a7SShri Abhyankar PetscScalar *array,*vals,*vals_ptr; 145286d161a7SShri Abhyankar 145386d161a7SShri Abhyankar PetscFunctionBegin; 145486d161a7SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 145586d161a7SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 145686d161a7SShri Abhyankar 145786d161a7SShri Abhyankar /* determine ownership of all rows */ 145886d161a7SShri Abhyankar if (newmat->rmap->n < 0) m = M/size + ((M % size) > rank); 145986d161a7SShri Abhyankar else m = newmat->rmap->n; 1460785e854fSJed Brown ierr = PetscMalloc1((size+2),&rowners);CHKERRQ(ierr); 146186d161a7SShri Abhyankar ierr = MPI_Allgather(&m,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr); 146286d161a7SShri Abhyankar rowners[0] = 0; 146386d161a7SShri Abhyankar for (i=2; i<=size; i++) { 146486d161a7SShri Abhyankar rowners[i] += rowners[i-1]; 146586d161a7SShri Abhyankar } 146686d161a7SShri Abhyankar 146786d161a7SShri Abhyankar if (!sizesset) { 146886d161a7SShri Abhyankar ierr = MatSetSizes(newmat,m,PETSC_DECIDE,M,N);CHKERRQ(ierr); 146986d161a7SShri Abhyankar } 14700298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 14718c778c55SBarry Smith ierr = MatDenseGetArray(newmat,&array);CHKERRQ(ierr); 147286d161a7SShri Abhyankar 147386d161a7SShri Abhyankar if (!rank) { 1474785e854fSJed Brown ierr = PetscMalloc1(m*N,&vals);CHKERRQ(ierr); 147586d161a7SShri Abhyankar 147686d161a7SShri Abhyankar /* read in my part of the matrix numerical values */ 147786d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,m*N,PETSC_SCALAR);CHKERRQ(ierr); 147886d161a7SShri Abhyankar 147986d161a7SShri Abhyankar /* insert into matrix-by row (this is why cannot directly read into array */ 148086d161a7SShri Abhyankar vals_ptr = vals; 148186d161a7SShri Abhyankar for (i=0; i<m; i++) { 148286d161a7SShri Abhyankar for (j=0; j<N; j++) { 148386d161a7SShri Abhyankar array[i + j*m] = *vals_ptr++; 148486d161a7SShri Abhyankar } 148586d161a7SShri Abhyankar } 148686d161a7SShri Abhyankar 148786d161a7SShri Abhyankar /* read in other processors and ship out */ 148886d161a7SShri Abhyankar for (i=1; i<size; i++) { 148986d161a7SShri Abhyankar nz = (rowners[i+1] - rowners[i])*N; 149086d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 1491a25532f0SBarry Smith ierr = MPIULong_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)(newmat))->tag,comm);CHKERRQ(ierr); 149286d161a7SShri Abhyankar } 149386d161a7SShri Abhyankar } else { 149486d161a7SShri Abhyankar /* receive numeric values */ 1495785e854fSJed Brown ierr = PetscMalloc1(m*N,&vals);CHKERRQ(ierr); 149686d161a7SShri Abhyankar 149786d161a7SShri Abhyankar /* receive message of values*/ 1498a25532f0SBarry Smith ierr = MPIULong_Recv(vals,m*N,MPIU_SCALAR,0,((PetscObject)(newmat))->tag,comm);CHKERRQ(ierr); 149986d161a7SShri Abhyankar 150086d161a7SShri Abhyankar /* insert into matrix-by row (this is why cannot directly read into array */ 150186d161a7SShri Abhyankar vals_ptr = vals; 150286d161a7SShri Abhyankar for (i=0; i<m; i++) { 150386d161a7SShri Abhyankar for (j=0; j<N; j++) { 150486d161a7SShri Abhyankar array[i + j*m] = *vals_ptr++; 150586d161a7SShri Abhyankar } 150686d161a7SShri Abhyankar } 150786d161a7SShri Abhyankar } 15088c778c55SBarry Smith ierr = MatDenseRestoreArray(newmat,&array);CHKERRQ(ierr); 150986d161a7SShri Abhyankar ierr = PetscFree(rowners);CHKERRQ(ierr); 151086d161a7SShri Abhyankar ierr = PetscFree(vals);CHKERRQ(ierr); 151186d161a7SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 151286d161a7SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 151386d161a7SShri Abhyankar PetscFunctionReturn(0); 151486d161a7SShri Abhyankar } 151586d161a7SShri Abhyankar 151686d161a7SShri Abhyankar #undef __FUNCT__ 15175bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPIDense" 1518112444f4SShri Abhyankar PetscErrorCode MatLoad_MPIDense(Mat newmat,PetscViewer viewer) 151986d161a7SShri Abhyankar { 152086d161a7SShri Abhyankar PetscScalar *vals,*svals; 1521ce94432eSBarry Smith MPI_Comm comm; 152286d161a7SShri Abhyankar MPI_Status status; 152386d161a7SShri Abhyankar PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*rowners,*sndcounts,m,maxnz; 152486d161a7SShri Abhyankar PetscInt header[4],*rowlengths = 0,M,N,*cols; 152586d161a7SShri Abhyankar PetscInt *ourlens,*procsnz = 0,*offlens,jj,*mycols,*smycols; 152686d161a7SShri Abhyankar PetscInt i,nz,j,rstart,rend,sizesset=1,grows,gcols; 152786d161a7SShri Abhyankar int fd; 152886d161a7SShri Abhyankar PetscErrorCode ierr; 152986d161a7SShri Abhyankar 153086d161a7SShri Abhyankar PetscFunctionBegin; 1531ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 153286d161a7SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 153386d161a7SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 153486d161a7SShri Abhyankar if (!rank) { 153586d161a7SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 153686d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr); 153786d161a7SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 153886d161a7SShri Abhyankar } 153986d161a7SShri Abhyankar if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0; 154086d161a7SShri Abhyankar 154186d161a7SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 154286d161a7SShri Abhyankar M = header[1]; N = header[2]; nz = header[3]; 154386d161a7SShri Abhyankar 154486d161a7SShri Abhyankar /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */ 154586d161a7SShri Abhyankar if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M; 154686d161a7SShri Abhyankar if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N; 154786d161a7SShri Abhyankar 154886d161a7SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 154986d161a7SShri Abhyankar if (sizesset) { 155086d161a7SShri Abhyankar ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr); 155186d161a7SShri Abhyankar } 1552abd38a8fSBarry Smith if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows); 1553abd38a8fSBarry Smith if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols); 155486d161a7SShri Abhyankar 155586d161a7SShri Abhyankar /* 155686d161a7SShri Abhyankar Handle case where matrix is stored on disk as a dense matrix 155786d161a7SShri Abhyankar */ 155886d161a7SShri Abhyankar if (nz == MATRIX_BINARY_FORMAT_DENSE) { 15595bba2384SShri Abhyankar ierr = MatLoad_MPIDense_DenseInFile(comm,fd,M,N,newmat,sizesset);CHKERRQ(ierr); 156086d161a7SShri Abhyankar PetscFunctionReturn(0); 156186d161a7SShri Abhyankar } 156286d161a7SShri Abhyankar 156386d161a7SShri Abhyankar /* determine ownership of all rows */ 15642205254eSKarl Rupp if (newmat->rmap->n < 0) { 15652205254eSKarl Rupp ierr = PetscMPIIntCast(M/size + ((M % size) > rank),&m);CHKERRQ(ierr); 15662205254eSKarl Rupp } else { 15672205254eSKarl Rupp ierr = PetscMPIIntCast(newmat->rmap->n,&m);CHKERRQ(ierr); 15682205254eSKarl Rupp } 1569785e854fSJed Brown ierr = PetscMalloc1((size+2),&rowners);CHKERRQ(ierr); 157086d161a7SShri Abhyankar ierr = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 157186d161a7SShri Abhyankar rowners[0] = 0; 157286d161a7SShri Abhyankar for (i=2; i<=size; i++) { 157386d161a7SShri Abhyankar rowners[i] += rowners[i-1]; 157486d161a7SShri Abhyankar } 157586d161a7SShri Abhyankar rstart = rowners[rank]; 157686d161a7SShri Abhyankar rend = rowners[rank+1]; 157786d161a7SShri Abhyankar 157886d161a7SShri Abhyankar /* distribute row lengths to all processors */ 1579dcca6d9dSJed Brown ierr = PetscMalloc2(rend-rstart,&ourlens,rend-rstart,&offlens);CHKERRQ(ierr); 158086d161a7SShri Abhyankar if (!rank) { 1581785e854fSJed Brown ierr = PetscMalloc1(M,&rowlengths);CHKERRQ(ierr); 158286d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 1583785e854fSJed Brown ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr); 158486d161a7SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = rowners[i+1] - rowners[i]; 158586d161a7SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr); 158686d161a7SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 158786d161a7SShri Abhyankar } else { 158886d161a7SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr); 158986d161a7SShri Abhyankar } 159086d161a7SShri Abhyankar 159186d161a7SShri Abhyankar if (!rank) { 159286d161a7SShri Abhyankar /* calculate the number of nonzeros on each processor */ 1593785e854fSJed Brown ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr); 159486d161a7SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 159586d161a7SShri Abhyankar for (i=0; i<size; i++) { 159686d161a7SShri Abhyankar for (j=rowners[i]; j< rowners[i+1]; j++) { 159786d161a7SShri Abhyankar procsnz[i] += rowlengths[j]; 159886d161a7SShri Abhyankar } 159986d161a7SShri Abhyankar } 160086d161a7SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 160186d161a7SShri Abhyankar 160286d161a7SShri Abhyankar /* determine max buffer needed and allocate it */ 160386d161a7SShri Abhyankar maxnz = 0; 160486d161a7SShri Abhyankar for (i=0; i<size; i++) { 160586d161a7SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 160686d161a7SShri Abhyankar } 1607785e854fSJed Brown ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr); 160886d161a7SShri Abhyankar 160986d161a7SShri Abhyankar /* read in my part of the matrix column indices */ 161086d161a7SShri Abhyankar nz = procsnz[0]; 1611785e854fSJed Brown ierr = PetscMalloc1(nz,&mycols);CHKERRQ(ierr); 161286d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 161386d161a7SShri Abhyankar 161486d161a7SShri Abhyankar /* read in every one elses and ship off */ 161586d161a7SShri Abhyankar for (i=1; i<size; i++) { 161686d161a7SShri Abhyankar nz = procsnz[i]; 161786d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 161886d161a7SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 161986d161a7SShri Abhyankar } 162086d161a7SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 162186d161a7SShri Abhyankar } else { 162286d161a7SShri Abhyankar /* determine buffer space needed for message */ 162386d161a7SShri Abhyankar nz = 0; 162486d161a7SShri Abhyankar for (i=0; i<m; i++) { 162586d161a7SShri Abhyankar nz += ourlens[i]; 162686d161a7SShri Abhyankar } 1627785e854fSJed Brown ierr = PetscMalloc1((nz+1),&mycols);CHKERRQ(ierr); 162886d161a7SShri Abhyankar 162986d161a7SShri Abhyankar /* receive message of column indices*/ 163086d161a7SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 163186d161a7SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 163286d161a7SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 163386d161a7SShri Abhyankar } 163486d161a7SShri Abhyankar 163586d161a7SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 163686d161a7SShri Abhyankar ierr = PetscMemzero(offlens,m*sizeof(PetscInt));CHKERRQ(ierr); 163786d161a7SShri Abhyankar jj = 0; 163886d161a7SShri Abhyankar for (i=0; i<m; i++) { 163986d161a7SShri Abhyankar for (j=0; j<ourlens[i]; j++) { 164086d161a7SShri Abhyankar if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++; 164186d161a7SShri Abhyankar jj++; 164286d161a7SShri Abhyankar } 164386d161a7SShri Abhyankar } 164486d161a7SShri Abhyankar 164586d161a7SShri Abhyankar /* create our matrix */ 16462205254eSKarl Rupp for (i=0; i<m; i++) ourlens[i] -= offlens[i]; 164786d161a7SShri Abhyankar 164886d161a7SShri Abhyankar if (!sizesset) { 164986d161a7SShri Abhyankar ierr = MatSetSizes(newmat,m,PETSC_DECIDE,M,N);CHKERRQ(ierr); 165086d161a7SShri Abhyankar } 16510298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 16522205254eSKarl Rupp for (i=0; i<m; i++) ourlens[i] += offlens[i]; 165386d161a7SShri Abhyankar 165486d161a7SShri Abhyankar if (!rank) { 1655785e854fSJed Brown ierr = PetscMalloc1(maxnz,&vals);CHKERRQ(ierr); 165686d161a7SShri Abhyankar 165786d161a7SShri Abhyankar /* read in my part of the matrix numerical values */ 165886d161a7SShri Abhyankar nz = procsnz[0]; 165986d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 166086d161a7SShri Abhyankar 166186d161a7SShri Abhyankar /* insert into matrix */ 166286d161a7SShri Abhyankar jj = rstart; 166386d161a7SShri Abhyankar smycols = mycols; 166486d161a7SShri Abhyankar svals = vals; 166586d161a7SShri Abhyankar for (i=0; i<m; i++) { 166686d161a7SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 166786d161a7SShri Abhyankar smycols += ourlens[i]; 166886d161a7SShri Abhyankar svals += ourlens[i]; 166986d161a7SShri Abhyankar jj++; 167086d161a7SShri Abhyankar } 167186d161a7SShri Abhyankar 167286d161a7SShri Abhyankar /* read in other processors and ship out */ 167386d161a7SShri Abhyankar for (i=1; i<size; i++) { 167486d161a7SShri Abhyankar nz = procsnz[i]; 167586d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 167686d161a7SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 167786d161a7SShri Abhyankar } 167886d161a7SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 167986d161a7SShri Abhyankar } else { 168086d161a7SShri Abhyankar /* receive numeric values */ 1681785e854fSJed Brown ierr = PetscMalloc1((nz+1),&vals);CHKERRQ(ierr); 168286d161a7SShri Abhyankar 168386d161a7SShri Abhyankar /* receive message of values*/ 168486d161a7SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 168586d161a7SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 168686d161a7SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 168786d161a7SShri Abhyankar 168886d161a7SShri Abhyankar /* insert into matrix */ 168986d161a7SShri Abhyankar jj = rstart; 169086d161a7SShri Abhyankar smycols = mycols; 169186d161a7SShri Abhyankar svals = vals; 169286d161a7SShri Abhyankar for (i=0; i<m; i++) { 169386d161a7SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 169486d161a7SShri Abhyankar smycols += ourlens[i]; 169586d161a7SShri Abhyankar svals += ourlens[i]; 169686d161a7SShri Abhyankar jj++; 169786d161a7SShri Abhyankar } 169886d161a7SShri Abhyankar } 169986d161a7SShri Abhyankar ierr = PetscFree2(ourlens,offlens);CHKERRQ(ierr); 170086d161a7SShri Abhyankar ierr = PetscFree(vals);CHKERRQ(ierr); 170186d161a7SShri Abhyankar ierr = PetscFree(mycols);CHKERRQ(ierr); 170286d161a7SShri Abhyankar ierr = PetscFree(rowners);CHKERRQ(ierr); 170386d161a7SShri Abhyankar 170486d161a7SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 170586d161a7SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 170686d161a7SShri Abhyankar PetscFunctionReturn(0); 170786d161a7SShri Abhyankar } 170886d161a7SShri Abhyankar 170986d161a7SShri Abhyankar #undef __FUNCT__ 17106e4ee0c6SHong Zhang #define __FUNCT__ "MatEqual_MPIDense" 1711ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool *flag) 17126e4ee0c6SHong Zhang { 17136e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 17146e4ee0c6SHong Zhang Mat a,b; 1715ace3abfcSBarry Smith PetscBool flg; 17166e4ee0c6SHong Zhang PetscErrorCode ierr; 171790ace30eSBarry Smith 17186e4ee0c6SHong Zhang PetscFunctionBegin; 17196e4ee0c6SHong Zhang a = matA->A; 17206e4ee0c6SHong Zhang b = matB->A; 17216e4ee0c6SHong Zhang ierr = MatEqual(a,b,&flg);CHKERRQ(ierr); 1722ce94432eSBarry Smith ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 17236e4ee0c6SHong Zhang PetscFunctionReturn(0); 17246e4ee0c6SHong Zhang } 172590ace30eSBarry Smith 1726