xref: /petsc/src/mat/impls/dense/mpi/mpidense.c (revision a3fa217bfefef3d54995bb82b2b5ea8a3c3e9019)
1be1d678aSKris Buschelman 
2ed3cc1f0SBarry Smith /*
3ed3cc1f0SBarry Smith    Basic functions for basic parallel dense matrices.
4ed3cc1f0SBarry Smith */
5ed3cc1f0SBarry Smith 
604fea9ffSBarry Smith 
7c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h>    /*I   "petscmat.h"  I*/
88949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h>
98965ea79SLois Curfman McInnes 
10ba8c8a56SBarry Smith #undef __FUNCT__
11ab92ecdeSBarry Smith #define __FUNCT__ "MatDenseGetLocalMatrix"
12ab92ecdeSBarry Smith /*@
13ab92ecdeSBarry Smith 
14ab92ecdeSBarry Smith       MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential
15ab92ecdeSBarry Smith               matrix that represents the operator. For sequential matrices it returns itself.
16ab92ecdeSBarry Smith 
17ab92ecdeSBarry Smith     Input Parameter:
18ab92ecdeSBarry Smith .      A - the Seq or MPI dense matrix
19ab92ecdeSBarry Smith 
20ab92ecdeSBarry Smith     Output Parameter:
21ab92ecdeSBarry Smith .      B - the inner matrix
22ab92ecdeSBarry Smith 
238e6c10adSSatish Balay     Level: intermediate
248e6c10adSSatish Balay 
25ab92ecdeSBarry Smith @*/
26ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B)
27ab92ecdeSBarry Smith {
28ab92ecdeSBarry Smith   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
29ab92ecdeSBarry Smith   PetscErrorCode ierr;
30ace3abfcSBarry Smith   PetscBool      flg;
31ab92ecdeSBarry Smith 
32ab92ecdeSBarry Smith   PetscFunctionBegin;
33251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr);
342205254eSKarl Rupp   if (flg) *B = mat->A;
352205254eSKarl Rupp   else *B = A;
36ab92ecdeSBarry Smith   PetscFunctionReturn(0);
37ab92ecdeSBarry Smith }
38ab92ecdeSBarry Smith 
39ab92ecdeSBarry Smith #undef __FUNCT__
40ba8c8a56SBarry Smith #define __FUNCT__ "MatGetRow_MPIDense"
41ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
42ba8c8a56SBarry Smith {
43ba8c8a56SBarry Smith   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
44ba8c8a56SBarry Smith   PetscErrorCode ierr;
45d0f46423SBarry Smith   PetscInt       lrow,rstart = A->rmap->rstart,rend = A->rmap->rend;
46ba8c8a56SBarry Smith 
47ba8c8a56SBarry Smith   PetscFunctionBegin;
48e7e72b3dSBarry Smith   if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows");
49ba8c8a56SBarry Smith   lrow = row - rstart;
50ba8c8a56SBarry Smith   ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr);
51ba8c8a56SBarry Smith   PetscFunctionReturn(0);
52ba8c8a56SBarry Smith }
53ba8c8a56SBarry Smith 
54ba8c8a56SBarry Smith #undef __FUNCT__
55ba8c8a56SBarry Smith #define __FUNCT__ "MatRestoreRow_MPIDense"
56ba8c8a56SBarry Smith PetscErrorCode MatRestoreRow_MPIDense(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
57ba8c8a56SBarry Smith {
58ba8c8a56SBarry Smith   PetscErrorCode ierr;
59ba8c8a56SBarry Smith 
60ba8c8a56SBarry Smith   PetscFunctionBegin;
61ba8c8a56SBarry Smith   if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);}
62ba8c8a56SBarry Smith   if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);}
63ba8c8a56SBarry Smith   PetscFunctionReturn(0);
64ba8c8a56SBarry Smith }
65ba8c8a56SBarry Smith 
664a2ae208SSatish Balay #undef __FUNCT__
674a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIDense"
6811bd1e4dSLisandro Dalcin PetscErrorCode  MatGetDiagonalBlock_MPIDense(Mat A,Mat *a)
690de54da6SSatish Balay {
700de54da6SSatish Balay   Mat_MPIDense   *mdn = (Mat_MPIDense*)A->data;
716849ba73SBarry Smith   PetscErrorCode ierr;
72d0f46423SBarry Smith   PetscInt       m = A->rmap->n,rstart = A->rmap->rstart;
7387828ca2SBarry Smith   PetscScalar    *array;
740de54da6SSatish Balay   MPI_Comm       comm;
7511bd1e4dSLisandro Dalcin   Mat            B;
760de54da6SSatish Balay 
770de54da6SSatish Balay   PetscFunctionBegin;
78e32f2f54SBarry Smith   if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported.");
790de54da6SSatish Balay 
8011bd1e4dSLisandro Dalcin   ierr = PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B);CHKERRQ(ierr);
8111bd1e4dSLisandro Dalcin   if (!B) {
820de54da6SSatish Balay     ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr);
8311bd1e4dSLisandro Dalcin     ierr = MatCreate(comm,&B);CHKERRQ(ierr);
8411bd1e4dSLisandro Dalcin     ierr = MatSetSizes(B,m,m,m,m);CHKERRQ(ierr);
8511bd1e4dSLisandro Dalcin     ierr = MatSetType(B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr);
868c778c55SBarry Smith     ierr = MatDenseGetArray(mdn->A,&array);CHKERRQ(ierr);
8711bd1e4dSLisandro Dalcin     ierr = MatSeqDenseSetPreallocation(B,array+m*rstart);CHKERRQ(ierr);
888c778c55SBarry Smith     ierr = MatDenseRestoreArray(mdn->A,&array);CHKERRQ(ierr);
8911bd1e4dSLisandro Dalcin     ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
9011bd1e4dSLisandro Dalcin     ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
9111bd1e4dSLisandro Dalcin     ierr = PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B);CHKERRQ(ierr);
9211bd1e4dSLisandro Dalcin     *a   = B;
9311bd1e4dSLisandro Dalcin     ierr = MatDestroy(&B);CHKERRQ(ierr);
942205254eSKarl Rupp   } else *a = B;
950de54da6SSatish Balay   PetscFunctionReturn(0);
960de54da6SSatish Balay }
970de54da6SSatish Balay 
984a2ae208SSatish Balay #undef __FUNCT__
994a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIDense"
10013f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv)
1018965ea79SLois Curfman McInnes {
10239b7565bSBarry Smith   Mat_MPIDense   *A = (Mat_MPIDense*)mat->data;
103dfbe8321SBarry Smith   PetscErrorCode ierr;
104d0f46423SBarry Smith   PetscInt       i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row;
105ace3abfcSBarry Smith   PetscBool      roworiented = A->roworiented;
1068965ea79SLois Curfman McInnes 
1073a40ed3dSBarry Smith   PetscFunctionBegin;
10871fd2e92SBarry Smith   if (v) PetscValidScalarPointer(v,6);
1098965ea79SLois Curfman McInnes   for (i=0; i<m; i++) {
1105ef9f2a5SBarry Smith     if (idxm[i] < 0) continue;
111e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
1128965ea79SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
1138965ea79SLois Curfman McInnes       row = idxm[i] - rstart;
11439b7565bSBarry Smith       if (roworiented) {
11539b7565bSBarry Smith         ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr);
1163a40ed3dSBarry Smith       } else {
1178965ea79SLois Curfman McInnes         for (j=0; j<n; j++) {
1185ef9f2a5SBarry Smith           if (idxn[j] < 0) continue;
119e32f2f54SBarry Smith           if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
12039b7565bSBarry Smith           ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr);
12139b7565bSBarry Smith         }
1228965ea79SLois Curfman McInnes       }
1232205254eSKarl Rupp     } else if (!A->donotstash) {
1245080c13bSMatthew G Knepley       mat->assembled = PETSC_FALSE;
12539b7565bSBarry Smith       if (roworiented) {
126b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE);CHKERRQ(ierr);
127d36fbae8SSatish Balay       } else {
128b400d20cSBarry Smith         ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE);CHKERRQ(ierr);
12939b7565bSBarry Smith       }
130b49de8d1SLois Curfman McInnes     }
131b49de8d1SLois Curfman McInnes   }
1323a40ed3dSBarry Smith   PetscFunctionReturn(0);
133b49de8d1SLois Curfman McInnes }
134b49de8d1SLois Curfman McInnes 
1354a2ae208SSatish Balay #undef __FUNCT__
1364a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIDense"
13713f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
138b49de8d1SLois Curfman McInnes {
139b49de8d1SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
140dfbe8321SBarry Smith   PetscErrorCode ierr;
141d0f46423SBarry Smith   PetscInt       i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row;
142b49de8d1SLois Curfman McInnes 
1433a40ed3dSBarry Smith   PetscFunctionBegin;
144b49de8d1SLois Curfman McInnes   for (i=0; i<m; i++) {
145e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */
146e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
147b49de8d1SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
148b49de8d1SLois Curfman McInnes       row = idxm[i] - rstart;
149b49de8d1SLois Curfman McInnes       for (j=0; j<n; j++) {
150e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */
151e7e72b3dSBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
152b49de8d1SLois Curfman McInnes         ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr);
153b49de8d1SLois Curfman McInnes       }
154e7e72b3dSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
1558965ea79SLois Curfman McInnes   }
1563a40ed3dSBarry Smith   PetscFunctionReturn(0);
1578965ea79SLois Curfman McInnes }
1588965ea79SLois Curfman McInnes 
1594a2ae208SSatish Balay #undef __FUNCT__
1608c778c55SBarry Smith #define __FUNCT__ "MatDenseGetArray_MPIDense"
1618c778c55SBarry Smith PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar *array[])
162ff14e315SSatish Balay {
163ff14e315SSatish Balay   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
164dfbe8321SBarry Smith   PetscErrorCode ierr;
165ff14e315SSatish Balay 
1663a40ed3dSBarry Smith   PetscFunctionBegin;
1678c778c55SBarry Smith   ierr = MatDenseGetArray(a->A,array);CHKERRQ(ierr);
1683a40ed3dSBarry Smith   PetscFunctionReturn(0);
169ff14e315SSatish Balay }
170ff14e315SSatish Balay 
1714a2ae208SSatish Balay #undef __FUNCT__
1724a2ae208SSatish Balay #define __FUNCT__ "MatGetSubMatrix_MPIDense"
1734aa3045dSJed Brown static PetscErrorCode MatGetSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B)
174ca3fa75bSLois Curfman McInnes {
175ca3fa75bSLois Curfman McInnes   Mat_MPIDense   *mat  = (Mat_MPIDense*)A->data,*newmatd;
176ca3fa75bSLois Curfman McInnes   Mat_SeqDense   *lmat = (Mat_SeqDense*)mat->A->data;
1776849ba73SBarry Smith   PetscErrorCode ierr;
1784aa3045dSJed Brown   PetscInt       i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols;
1795d0c19d7SBarry Smith   const PetscInt *irow,*icol;
18087828ca2SBarry Smith   PetscScalar    *av,*bv,*v = lmat->v;
181ca3fa75bSLois Curfman McInnes   Mat            newmat;
1824aa3045dSJed Brown   IS             iscol_local;
183ca3fa75bSLois Curfman McInnes 
184ca3fa75bSLois Curfman McInnes   PetscFunctionBegin;
1854aa3045dSJed Brown   ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
186ca3fa75bSLois Curfman McInnes   ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr);
1874aa3045dSJed Brown   ierr = ISGetIndices(iscol_local,&icol);CHKERRQ(ierr);
188b9b97703SBarry Smith   ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr);
189b9b97703SBarry Smith   ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr);
1904aa3045dSJed Brown   ierr = ISGetSize(iscol,&Ncols);CHKERRQ(ierr); /* global number of columns, size of iscol_local */
191ca3fa75bSLois Curfman McInnes 
192ca3fa75bSLois Curfman McInnes   /* No parallel redistribution currently supported! Should really check each index set
1937eba5e9cSLois Curfman McInnes      to comfirm that it is OK.  ... Currently supports only submatrix same partitioning as
1947eba5e9cSLois Curfman McInnes      original matrix! */
195ca3fa75bSLois Curfman McInnes 
196ca3fa75bSLois Curfman McInnes   ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr);
1977eba5e9cSLois Curfman McInnes   ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr);
198ca3fa75bSLois Curfman McInnes 
199ca3fa75bSLois Curfman McInnes   /* Check submatrix call */
200ca3fa75bSLois Curfman McInnes   if (scall == MAT_REUSE_MATRIX) {
201e32f2f54SBarry Smith     /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */
2027eba5e9cSLois Curfman McInnes     /* Really need to test rows and column sizes! */
203ca3fa75bSLois Curfman McInnes     newmat = *B;
204ca3fa75bSLois Curfman McInnes   } else {
205ca3fa75bSLois Curfman McInnes     /* Create and fill new matrix */
206ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr);
2074aa3045dSJed Brown     ierr = MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols);CHKERRQ(ierr);
2087adad957SLisandro Dalcin     ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr);
2090298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr);
210ca3fa75bSLois Curfman McInnes   }
211ca3fa75bSLois Curfman McInnes 
212ca3fa75bSLois Curfman McInnes   /* Now extract the data pointers and do the copy, column at a time */
213ca3fa75bSLois Curfman McInnes   newmatd = (Mat_MPIDense*)newmat->data;
214ca3fa75bSLois Curfman McInnes   bv      = ((Mat_SeqDense*)newmatd->A->data)->v;
215ca3fa75bSLois Curfman McInnes 
2164aa3045dSJed Brown   for (i=0; i<Ncols; i++) {
21725a33276SHong Zhang     av = v + ((Mat_SeqDense*)mat->A->data)->lda*icol[i];
218ca3fa75bSLois Curfman McInnes     for (j=0; j<nrows; j++) {
2197eba5e9cSLois Curfman McInnes       *bv++ = av[irow[j] - rstart];
220ca3fa75bSLois Curfman McInnes     }
221ca3fa75bSLois Curfman McInnes   }
222ca3fa75bSLois Curfman McInnes 
223ca3fa75bSLois Curfman McInnes   /* Assemble the matrices so that the correct flags are set */
224ca3fa75bSLois Curfman McInnes   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
225ca3fa75bSLois Curfman McInnes   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
226ca3fa75bSLois Curfman McInnes 
227ca3fa75bSLois Curfman McInnes   /* Free work space */
228ca3fa75bSLois Curfman McInnes   ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr);
2295bdf786aSShri Abhyankar   ierr = ISRestoreIndices(iscol_local,&icol);CHKERRQ(ierr);
23032bb1f2dSLisandro Dalcin   ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
231ca3fa75bSLois Curfman McInnes   *B   = newmat;
232ca3fa75bSLois Curfman McInnes   PetscFunctionReturn(0);
233ca3fa75bSLois Curfman McInnes }
234ca3fa75bSLois Curfman McInnes 
2354a2ae208SSatish Balay #undef __FUNCT__
2368c778c55SBarry Smith #define __FUNCT__ "MatDenseRestoreArray_MPIDense"
2378c778c55SBarry Smith PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar *array[])
238ff14e315SSatish Balay {
23973a71a0fSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
24073a71a0fSBarry Smith   PetscErrorCode ierr;
24173a71a0fSBarry Smith 
2423a40ed3dSBarry Smith   PetscFunctionBegin;
2438c778c55SBarry Smith   ierr = MatDenseRestoreArray(a->A,array);CHKERRQ(ierr);
2443a40ed3dSBarry Smith   PetscFunctionReturn(0);
245ff14e315SSatish Balay }
246ff14e315SSatish Balay 
2474a2ae208SSatish Balay #undef __FUNCT__
2484a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIDense"
249dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode)
2508965ea79SLois Curfman McInnes {
25139ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
252ce94432eSBarry Smith   MPI_Comm       comm;
253dfbe8321SBarry Smith   PetscErrorCode ierr;
25413f74950SBarry Smith   PetscInt       nstash,reallocs;
2558965ea79SLois Curfman McInnes   InsertMode     addv;
2568965ea79SLois Curfman McInnes 
2573a40ed3dSBarry Smith   PetscFunctionBegin;
258ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr);
2598965ea79SLois Curfman McInnes   /* make sure all processors are either in INSERTMODE or ADDMODE */
260c3aae356SJed Brown   ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,comm);CHKERRQ(ierr);
261ce94432eSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Cannot mix adds/inserts on different procs");
262e0fa3b82SLois Curfman McInnes   mat->insertmode = addv; /* in case this processor had no cache */
2638965ea79SLois Curfman McInnes 
264d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
2658798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
266ae15b995SBarry Smith   ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
2673a40ed3dSBarry Smith   PetscFunctionReturn(0);
2688965ea79SLois Curfman McInnes }
2698965ea79SLois Curfman McInnes 
2704a2ae208SSatish Balay #undef __FUNCT__
2714a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIDense"
272dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode)
2738965ea79SLois Curfman McInnes {
27439ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn=(Mat_MPIDense*)mat->data;
2756849ba73SBarry Smith   PetscErrorCode ierr;
27613f74950SBarry Smith   PetscInt       i,*row,*col,flg,j,rstart,ncols;
27713f74950SBarry Smith   PetscMPIInt    n;
27887828ca2SBarry Smith   PetscScalar    *val;
279e0fa3b82SLois Curfman McInnes   InsertMode     addv=mat->insertmode;
2808965ea79SLois Curfman McInnes 
2813a40ed3dSBarry Smith   PetscFunctionBegin;
2828965ea79SLois Curfman McInnes   /*  wait on receives */
2837ef1d9bdSSatish Balay   while (1) {
2848798bf22SSatish Balay     ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
2857ef1d9bdSSatish Balay     if (!flg) break;
2868965ea79SLois Curfman McInnes 
2877ef1d9bdSSatish Balay     for (i=0; i<n;) {
2887ef1d9bdSSatish Balay       /* Now identify the consecutive vals belonging to the same row */
2892205254eSKarl Rupp       for (j=i,rstart=row[j]; j<n; j++) {
2902205254eSKarl Rupp         if (row[j] != rstart) break;
2912205254eSKarl Rupp       }
2927ef1d9bdSSatish Balay       if (j < n) ncols = j-i;
2937ef1d9bdSSatish Balay       else       ncols = n-i;
2947ef1d9bdSSatish Balay       /* Now assemble all these values with a single function call */
2957ef1d9bdSSatish Balay       ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
2967ef1d9bdSSatish Balay       i    = j;
2978965ea79SLois Curfman McInnes     }
2987ef1d9bdSSatish Balay   }
2998798bf22SSatish Balay   ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
3008965ea79SLois Curfman McInnes 
30139ddd567SLois Curfman McInnes   ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr);
30239ddd567SLois Curfman McInnes   ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr);
3038965ea79SLois Curfman McInnes 
3046d4a8577SBarry Smith   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
30539ddd567SLois Curfman McInnes     ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr);
3068965ea79SLois Curfman McInnes   }
3073a40ed3dSBarry Smith   PetscFunctionReturn(0);
3088965ea79SLois Curfman McInnes }
3098965ea79SLois Curfman McInnes 
3104a2ae208SSatish Balay #undef __FUNCT__
3114a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIDense"
312dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A)
3138965ea79SLois Curfman McInnes {
314dfbe8321SBarry Smith   PetscErrorCode ierr;
31539ddd567SLois Curfman McInnes   Mat_MPIDense   *l = (Mat_MPIDense*)A->data;
3163a40ed3dSBarry Smith 
3173a40ed3dSBarry Smith   PetscFunctionBegin;
3183a40ed3dSBarry Smith   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
3193a40ed3dSBarry Smith   PetscFunctionReturn(0);
3208965ea79SLois Curfman McInnes }
3218965ea79SLois Curfman McInnes 
3228965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the
3238965ea79SLois Curfman McInnes    matrix is square and the column and row owerships are identical.
3248965ea79SLois Curfman McInnes    This is a BUG. The only way to fix it seems to be to access
3253501a2bdSLois Curfman McInnes    mdn->A and mdn->B directly and not through the MatZeroRows()
3268965ea79SLois Curfman McInnes    routine.
3278965ea79SLois Curfman McInnes */
3284a2ae208SSatish Balay #undef __FUNCT__
3294a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIDense"
3302b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
3318965ea79SLois Curfman McInnes {
33239ddd567SLois Curfman McInnes   Mat_MPIDense      *l = (Mat_MPIDense*)A->data;
3336849ba73SBarry Smith   PetscErrorCode    ierr;
334d0f46423SBarry Smith   PetscInt          i,*owners = A->rmap->range;
33576ec1555SBarry Smith   PetscInt          *sizes,j,idx,nsends;
33613f74950SBarry Smith   PetscInt          nmax,*svalues,*starts,*owner,nrecvs;
3377adad957SLisandro Dalcin   PetscInt          *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source;
33813f74950SBarry Smith   PetscInt          *lens,*lrows,*values;
33913f74950SBarry Smith   PetscMPIInt       n,imdex,rank = l->rank,size = l->size;
340ce94432eSBarry Smith   MPI_Comm          comm;
3418965ea79SLois Curfman McInnes   MPI_Request       *send_waits,*recv_waits;
3428965ea79SLois Curfman McInnes   MPI_Status        recv_status,*send_status;
343ace3abfcSBarry Smith   PetscBool         found;
34497b48c8fSBarry Smith   const PetscScalar *xx;
34597b48c8fSBarry Smith   PetscScalar       *bb;
3468965ea79SLois Curfman McInnes 
3473a40ed3dSBarry Smith   PetscFunctionBegin;
348ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
349ce94432eSBarry Smith   if (A->rmap->N != A->cmap->N) SETERRQ(comm,PETSC_ERR_SUP,"Only handles square matrices");
350b9679d65SBarry Smith   if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only handles matrices with identical column and row ownership");
3518965ea79SLois Curfman McInnes   /*  first count number of contributors to each processor */
352f628708eSJed Brown   ierr = PetscCalloc1(2*size,&sizes);CHKERRQ(ierr);
353037dbc42SBarry Smith   ierr = PetscMalloc1(N+1,&owner);CHKERRQ(ierr);  /* see note*/
3548965ea79SLois Curfman McInnes   for (i=0; i<N; i++) {
3558965ea79SLois Curfman McInnes     idx   = rows[i];
35635d8aa7fSBarry Smith     found = PETSC_FALSE;
3578965ea79SLois Curfman McInnes     for (j=0; j<size; j++) {
3588965ea79SLois Curfman McInnes       if (idx >= owners[j] && idx < owners[j+1]) {
35976ec1555SBarry Smith         sizes[2*j]++; sizes[2*j+1] = 1; owner[i] = j; found = PETSC_TRUE; break;
3608965ea79SLois Curfman McInnes       }
3618965ea79SLois Curfman McInnes     }
362e32f2f54SBarry Smith     if (!found) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Index out of range");
3638965ea79SLois Curfman McInnes   }
3642205254eSKarl Rupp   nsends = 0;
36576ec1555SBarry Smith   for (i=0; i<size; i++) nsends += sizes[2*i+1];
3668965ea79SLois Curfman McInnes 
3678965ea79SLois Curfman McInnes   /* inform other processors of number of messages and max length*/
36876ec1555SBarry Smith   ierr = PetscMaxSum(comm,sizes,&nmax,&nrecvs);CHKERRQ(ierr);
3698965ea79SLois Curfman McInnes 
3708965ea79SLois Curfman McInnes   /* post receives:   */
371785e854fSJed Brown   ierr = PetscMalloc1((nrecvs+1)*(nmax+1),&rvalues);CHKERRQ(ierr);
372785e854fSJed Brown   ierr = PetscMalloc1((nrecvs+1),&recv_waits);CHKERRQ(ierr);
3738965ea79SLois Curfman McInnes   for (i=0; i<nrecvs; i++) {
37413f74950SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
3758965ea79SLois Curfman McInnes   }
3768965ea79SLois Curfman McInnes 
3778965ea79SLois Curfman McInnes   /* do sends:
3788965ea79SLois Curfman McInnes       1) starts[i] gives the starting index in svalues for stuff going to
3798965ea79SLois Curfman McInnes          the ith processor
3808965ea79SLois Curfman McInnes   */
381785e854fSJed Brown   ierr = PetscMalloc1((N+1),&svalues);CHKERRQ(ierr);
382785e854fSJed Brown   ierr = PetscMalloc1((nsends+1),&send_waits);CHKERRQ(ierr);
383785e854fSJed Brown   ierr = PetscMalloc1((size+1),&starts);CHKERRQ(ierr);
3848965ea79SLois Curfman McInnes 
3858965ea79SLois Curfman McInnes   starts[0] = 0;
38676ec1555SBarry Smith   for (i=1; i<size; i++) starts[i] = starts[i-1] + sizes[2*i-2];
3872205254eSKarl Rupp   for (i=0; i<N; i++) svalues[starts[owner[i]]++] = rows[i];
3882205254eSKarl Rupp 
3892205254eSKarl Rupp   starts[0] = 0;
39076ec1555SBarry Smith   for (i=1; i<size+1; i++) starts[i] = starts[i-1] + sizes[2*i-2];
3918965ea79SLois Curfman McInnes   count = 0;
3928965ea79SLois Curfman McInnes   for (i=0; i<size; i++) {
39376ec1555SBarry Smith     if (sizes[2*i+1]) {
39476ec1555SBarry Smith       ierr = MPI_Isend(svalues+starts[i],sizes[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
3958965ea79SLois Curfman McInnes     }
3968965ea79SLois Curfman McInnes   }
397606d414cSSatish Balay   ierr = PetscFree(starts);CHKERRQ(ierr);
3988965ea79SLois Curfman McInnes 
3998965ea79SLois Curfman McInnes   base = owners[rank];
4008965ea79SLois Curfman McInnes 
4018965ea79SLois Curfman McInnes   /*  wait on receives */
402dcca6d9dSJed Brown   ierr  = PetscMalloc2(nrecvs,&lens,nrecvs,&source);CHKERRQ(ierr);
40374ed9c26SBarry Smith   count = nrecvs;
40474ed9c26SBarry Smith   slen  = 0;
4058965ea79SLois Curfman McInnes   while (count) {
406ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
4078965ea79SLois Curfman McInnes     /* unpack receives into our local space */
40813f74950SBarry Smith     ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr);
4092205254eSKarl Rupp 
4108965ea79SLois Curfman McInnes     source[imdex] = recv_status.MPI_SOURCE;
4118965ea79SLois Curfman McInnes     lens[imdex]   = n;
4128965ea79SLois Curfman McInnes     slen += n;
4138965ea79SLois Curfman McInnes     count--;
4148965ea79SLois Curfman McInnes   }
415606d414cSSatish Balay   ierr = PetscFree(recv_waits);CHKERRQ(ierr);
4168965ea79SLois Curfman McInnes 
4178965ea79SLois Curfman McInnes   /* move the data into the send scatter */
418785e854fSJed Brown   ierr  = PetscMalloc1((slen+1),&lrows);CHKERRQ(ierr);
4198965ea79SLois Curfman McInnes   count = 0;
4208965ea79SLois Curfman McInnes   for (i=0; i<nrecvs; i++) {
4218965ea79SLois Curfman McInnes     values = rvalues + i*nmax;
4228965ea79SLois Curfman McInnes     for (j=0; j<lens[i]; j++) {
4238965ea79SLois Curfman McInnes       lrows[count++] = values[j] - base;
4248965ea79SLois Curfman McInnes     }
4258965ea79SLois Curfman McInnes   }
426606d414cSSatish Balay   ierr = PetscFree(rvalues);CHKERRQ(ierr);
42774ed9c26SBarry Smith   ierr = PetscFree2(lens,source);CHKERRQ(ierr);
428606d414cSSatish Balay   ierr = PetscFree(owner);CHKERRQ(ierr);
42976ec1555SBarry Smith   ierr = PetscFree(sizes);CHKERRQ(ierr);
4308965ea79SLois Curfman McInnes 
43197b48c8fSBarry Smith   /* fix right hand side if needed */
43297b48c8fSBarry Smith   if (x && b) {
43397b48c8fSBarry Smith     ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr);
43497b48c8fSBarry Smith     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
43597b48c8fSBarry Smith     for (i=0; i<slen; i++) {
43697b48c8fSBarry Smith       bb[lrows[i]] = diag*xx[lrows[i]];
43797b48c8fSBarry Smith     }
43897b48c8fSBarry Smith     ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr);
43997b48c8fSBarry Smith     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
44097b48c8fSBarry Smith   }
44197b48c8fSBarry Smith 
4428965ea79SLois Curfman McInnes   /* actually zap the local rows */
443b9679d65SBarry Smith   ierr = MatZeroRows(l->A,slen,lrows,0.0,0,0);CHKERRQ(ierr);
444e2eb51b1SBarry Smith   if (diag != 0.0) {
445b9679d65SBarry Smith     Mat_SeqDense *ll = (Mat_SeqDense*)l->A->data;
446b9679d65SBarry Smith     PetscInt     m   = ll->lda, i;
447b9679d65SBarry Smith 
448b9679d65SBarry Smith     for (i=0; i<slen; i++) {
449b9679d65SBarry Smith       ll->v[lrows[i] + m*(A->cmap->rstart + lrows[i])] = diag;
450b9679d65SBarry Smith     }
451b9679d65SBarry Smith   }
452606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
4538965ea79SLois Curfman McInnes 
4548965ea79SLois Curfman McInnes   /* wait on sends */
4558965ea79SLois Curfman McInnes   if (nsends) {
456785e854fSJed Brown     ierr = PetscMalloc1(nsends,&send_status);CHKERRQ(ierr);
457ca161407SBarry Smith     ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
458606d414cSSatish Balay     ierr = PetscFree(send_status);CHKERRQ(ierr);
4598965ea79SLois Curfman McInnes   }
460606d414cSSatish Balay   ierr = PetscFree(send_waits);CHKERRQ(ierr);
461606d414cSSatish Balay   ierr = PetscFree(svalues);CHKERRQ(ierr);
4623a40ed3dSBarry Smith   PetscFunctionReturn(0);
4638965ea79SLois Curfman McInnes }
4648965ea79SLois Curfman McInnes 
4654a2ae208SSatish Balay #undef __FUNCT__
4664a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIDense"
467dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy)
4688965ea79SLois Curfman McInnes {
46939ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
470dfbe8321SBarry Smith   PetscErrorCode ierr;
471c456f294SBarry Smith 
4723a40ed3dSBarry Smith   PetscFunctionBegin;
473ca9f406cSSatish Balay   ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
474ca9f406cSSatish Balay   ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
47544cd7ae7SLois Curfman McInnes   ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy);CHKERRQ(ierr);
4763a40ed3dSBarry Smith   PetscFunctionReturn(0);
4778965ea79SLois Curfman McInnes }
4788965ea79SLois Curfman McInnes 
4794a2ae208SSatish Balay #undef __FUNCT__
4804a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIDense"
481dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz)
4828965ea79SLois Curfman McInnes {
48339ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
484dfbe8321SBarry Smith   PetscErrorCode ierr;
485c456f294SBarry Smith 
4863a40ed3dSBarry Smith   PetscFunctionBegin;
487ca9f406cSSatish Balay   ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
488ca9f406cSSatish Balay   ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
48944cd7ae7SLois Curfman McInnes   ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr);
4903a40ed3dSBarry Smith   PetscFunctionReturn(0);
4918965ea79SLois Curfman McInnes }
4928965ea79SLois Curfman McInnes 
4934a2ae208SSatish Balay #undef __FUNCT__
4944a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIDense"
495dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy)
496096963f5SLois Curfman McInnes {
497096963f5SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
498dfbe8321SBarry Smith   PetscErrorCode ierr;
49987828ca2SBarry Smith   PetscScalar    zero = 0.0;
500096963f5SLois Curfman McInnes 
5013a40ed3dSBarry Smith   PetscFunctionBegin;
5022dcb1b2aSMatthew Knepley   ierr = VecSet(yy,zero);CHKERRQ(ierr);
5037c922b88SBarry Smith   ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr);
504ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
505ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
5063a40ed3dSBarry Smith   PetscFunctionReturn(0);
507096963f5SLois Curfman McInnes }
508096963f5SLois Curfman McInnes 
5094a2ae208SSatish Balay #undef __FUNCT__
5104a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIDense"
511dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz)
512096963f5SLois Curfman McInnes {
513096963f5SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
514dfbe8321SBarry Smith   PetscErrorCode ierr;
515096963f5SLois Curfman McInnes 
5163a40ed3dSBarry Smith   PetscFunctionBegin;
5173501a2bdSLois Curfman McInnes   ierr = VecCopy(yy,zz);CHKERRQ(ierr);
5187c922b88SBarry Smith   ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr);
519ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
520ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
5213a40ed3dSBarry Smith   PetscFunctionReturn(0);
522096963f5SLois Curfman McInnes }
523096963f5SLois Curfman McInnes 
5244a2ae208SSatish Balay #undef __FUNCT__
5254a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIDense"
526dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v)
5278965ea79SLois Curfman McInnes {
52839ddd567SLois Curfman McInnes   Mat_MPIDense   *a    = (Mat_MPIDense*)A->data;
529096963f5SLois Curfman McInnes   Mat_SeqDense   *aloc = (Mat_SeqDense*)a->A->data;
530dfbe8321SBarry Smith   PetscErrorCode ierr;
531d0f46423SBarry Smith   PetscInt       len,i,n,m = A->rmap->n,radd;
53287828ca2SBarry Smith   PetscScalar    *x,zero = 0.0;
533ed3cc1f0SBarry Smith 
5343a40ed3dSBarry Smith   PetscFunctionBegin;
5352dcb1b2aSMatthew Knepley   ierr = VecSet(v,zero);CHKERRQ(ierr);
5361ebc52fbSHong Zhang   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
537096963f5SLois Curfman McInnes   ierr = VecGetSize(v,&n);CHKERRQ(ierr);
538e32f2f54SBarry Smith   if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec");
539d0f46423SBarry Smith   len  = PetscMin(a->A->rmap->n,a->A->cmap->n);
540d0f46423SBarry Smith   radd = A->rmap->rstart*m;
54144cd7ae7SLois Curfman McInnes   for (i=0; i<len; i++) {
542096963f5SLois Curfman McInnes     x[i] = aloc->v[radd + i*m + i];
543096963f5SLois Curfman McInnes   }
5441ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
5453a40ed3dSBarry Smith   PetscFunctionReturn(0);
5468965ea79SLois Curfman McInnes }
5478965ea79SLois Curfman McInnes 
5484a2ae208SSatish Balay #undef __FUNCT__
5494a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIDense"
550dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat)
5518965ea79SLois Curfman McInnes {
5523501a2bdSLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
553dfbe8321SBarry Smith   PetscErrorCode ierr;
554ed3cc1f0SBarry Smith 
5553a40ed3dSBarry Smith   PetscFunctionBegin;
556aa482453SBarry Smith #if defined(PETSC_USE_LOG)
557d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N);
5588965ea79SLois Curfman McInnes #endif
5598798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
5606bf464f9SBarry Smith   ierr = MatDestroy(&mdn->A);CHKERRQ(ierr);
5616bf464f9SBarry Smith   ierr = VecDestroy(&mdn->lvec);CHKERRQ(ierr);
5626bf464f9SBarry Smith   ierr = VecScatterDestroy(&mdn->Mvctx);CHKERRQ(ierr);
56301b82886SBarry Smith 
564bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
565dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
566bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr);
567bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL);CHKERRQ(ierr);
568bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
569bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
570bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
5713a40ed3dSBarry Smith   PetscFunctionReturn(0);
5728965ea79SLois Curfman McInnes }
57339ddd567SLois Curfman McInnes 
5744a2ae208SSatish Balay #undef __FUNCT__
5754a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_Binary"
5766849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_Binary(Mat mat,PetscViewer viewer)
5778965ea79SLois Curfman McInnes {
57839ddd567SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)mat->data;
579dfbe8321SBarry Smith   PetscErrorCode    ierr;
580aa05aa95SBarry Smith   PetscViewerFormat format;
581aa05aa95SBarry Smith   int               fd;
582d0f46423SBarry Smith   PetscInt          header[4],mmax,N = mat->cmap->N,i,j,m,k;
583aa05aa95SBarry Smith   PetscMPIInt       rank,tag  = ((PetscObject)viewer)->tag,size;
584578230a0SSatish Balay   PetscScalar       *work,*v,*vv;
585aa05aa95SBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)mdn->A->data;
5867056b6fcSBarry Smith 
5873a40ed3dSBarry Smith   PetscFunctionBegin;
58839ddd567SLois Curfman McInnes   if (mdn->size == 1) {
58939ddd567SLois Curfman McInnes     ierr = MatView(mdn->A,viewer);CHKERRQ(ierr);
590aa05aa95SBarry Smith   } else {
591aa05aa95SBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
592ce94432eSBarry Smith     ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
593ce94432eSBarry Smith     ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr);
594aa05aa95SBarry Smith 
595aa05aa95SBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
596f4403165SShri Abhyankar     if (format == PETSC_VIEWER_NATIVE) {
597aa05aa95SBarry Smith 
598aa05aa95SBarry Smith       if (!rank) {
599aa05aa95SBarry Smith         /* store the matrix as a dense matrix */
6000700a824SBarry Smith         header[0] = MAT_FILE_CLASSID;
601d0f46423SBarry Smith         header[1] = mat->rmap->N;
602aa05aa95SBarry Smith         header[2] = N;
603aa05aa95SBarry Smith         header[3] = MATRIX_BINARY_FORMAT_DENSE;
604aa05aa95SBarry Smith         ierr      = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
605aa05aa95SBarry Smith 
606aa05aa95SBarry Smith         /* get largest work array needed for transposing array */
607d0f46423SBarry Smith         mmax = mat->rmap->n;
608aa05aa95SBarry Smith         for (i=1; i<size; i++) {
609d0f46423SBarry Smith           mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]);
6108965ea79SLois Curfman McInnes         }
611785e854fSJed Brown         ierr = PetscMalloc1(mmax*N,&work);CHKERRQ(ierr);
612aa05aa95SBarry Smith 
613aa05aa95SBarry Smith         /* write out local array, by rows */
614d0f46423SBarry Smith         m = mat->rmap->n;
615aa05aa95SBarry Smith         v = a->v;
616aa05aa95SBarry Smith         for (j=0; j<N; j++) {
617aa05aa95SBarry Smith           for (i=0; i<m; i++) {
618578230a0SSatish Balay             work[j + i*N] = *v++;
619aa05aa95SBarry Smith           }
620aa05aa95SBarry Smith         }
621aa05aa95SBarry Smith         ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr);
622aa05aa95SBarry Smith         /* get largest work array to receive messages from other processes, excludes process zero */
623aa05aa95SBarry Smith         mmax = 0;
624aa05aa95SBarry Smith         for (i=1; i<size; i++) {
625d0f46423SBarry Smith           mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]);
626aa05aa95SBarry Smith         }
627785e854fSJed Brown         ierr = PetscMalloc1(mmax*N,&vv);CHKERRQ(ierr);
628aa05aa95SBarry Smith         for (k = 1; k < size; k++) {
629f8009846SMatthew Knepley           v    = vv;
630d0f46423SBarry Smith           m    = mat->rmap->range[k+1] - mat->rmap->range[k];
631ce94432eSBarry Smith           ierr = MPIULong_Recv(v,m*N,MPIU_SCALAR,k,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
632aa05aa95SBarry Smith 
633aa05aa95SBarry Smith           for (j = 0; j < N; j++) {
634aa05aa95SBarry Smith             for (i = 0; i < m; i++) {
635578230a0SSatish Balay               work[j + i*N] = *v++;
636aa05aa95SBarry Smith             }
637aa05aa95SBarry Smith           }
638aa05aa95SBarry Smith           ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr);
639aa05aa95SBarry Smith         }
640aa05aa95SBarry Smith         ierr = PetscFree(work);CHKERRQ(ierr);
641578230a0SSatish Balay         ierr = PetscFree(vv);CHKERRQ(ierr);
642aa05aa95SBarry Smith       } else {
643ce94432eSBarry Smith         ierr = MPIULong_Send(a->v,mat->rmap->n*mat->cmap->N,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
644aa05aa95SBarry Smith       }
645eb3f98d2SBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"To store a parallel dense matrix you must first call PetscViewerSetFormat(viewer,PETSC_VIEWER_NATIVE)");
646aa05aa95SBarry Smith   }
6473a40ed3dSBarry Smith   PetscFunctionReturn(0);
6488965ea79SLois Curfman McInnes }
6498965ea79SLois Curfman McInnes 
6509804daf3SBarry Smith #include <petscdraw.h>
6514a2ae208SSatish Balay #undef __FUNCT__
6524a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_ASCIIorDraworSocket"
6536849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
6548965ea79SLois Curfman McInnes {
65539ddd567SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)mat->data;
656dfbe8321SBarry Smith   PetscErrorCode    ierr;
65732dcc486SBarry Smith   PetscMPIInt       size = mdn->size,rank = mdn->rank;
65819fd82e9SBarry Smith   PetscViewerType   vtype;
659ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
660b0a32e0cSBarry Smith   PetscViewer       sviewer;
661f3ef73ceSBarry Smith   PetscViewerFormat format;
6628965ea79SLois Curfman McInnes 
6633a40ed3dSBarry Smith   PetscFunctionBegin;
664251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
665251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
66632077d6dSBarry Smith   if (iascii) {
667b0a32e0cSBarry Smith     ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr);
668b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
669456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
6704e220ebcSLois Curfman McInnes       MatInfo info;
671888f2ed8SSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
6727b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr);
6737b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"  [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr);
674b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
6757b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr);
6765d00a290SHong Zhang       ierr = VecScatterView(mdn->Mvctx,viewer);CHKERRQ(ierr);
6773a40ed3dSBarry Smith       PetscFunctionReturn(0);
678fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
6793a40ed3dSBarry Smith       PetscFunctionReturn(0);
6808965ea79SLois Curfman McInnes     }
681f1af5d2fSBarry Smith   } else if (isdraw) {
682b0a32e0cSBarry Smith     PetscDraw draw;
683ace3abfcSBarry Smith     PetscBool isnull;
684f1af5d2fSBarry Smith 
685b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
686b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
687f1af5d2fSBarry Smith     if (isnull) PetscFunctionReturn(0);
688f1af5d2fSBarry Smith   }
68977ed5343SBarry Smith 
6908965ea79SLois Curfman McInnes   if (size == 1) {
69139ddd567SLois Curfman McInnes     ierr = MatView(mdn->A,viewer);CHKERRQ(ierr);
6923a40ed3dSBarry Smith   } else {
6938965ea79SLois Curfman McInnes     /* assemble the entire matrix onto first processor. */
6948965ea79SLois Curfman McInnes     Mat         A;
695d0f46423SBarry Smith     PetscInt    M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz;
696ba8c8a56SBarry Smith     PetscInt    *cols;
697ba8c8a56SBarry Smith     PetscScalar *vals;
6988965ea79SLois Curfman McInnes 
699ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
7008965ea79SLois Curfman McInnes     if (!rank) {
701f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
7023a40ed3dSBarry Smith     } else {
703f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
7048965ea79SLois Curfman McInnes     }
7057adad957SLisandro Dalcin     /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */
706878740d9SKris Buschelman     ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr);
7070298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr);
7083bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
7098965ea79SLois Curfman McInnes 
71039ddd567SLois Curfman McInnes     /* Copy the matrix ... This isn't the most efficient means,
71139ddd567SLois Curfman McInnes        but it's quick for now */
71251022da4SBarry Smith     A->insertmode = INSERT_VALUES;
7132205254eSKarl Rupp 
7142205254eSKarl Rupp     row = mat->rmap->rstart;
7152205254eSKarl Rupp     m   = mdn->A->rmap->n;
7168965ea79SLois Curfman McInnes     for (i=0; i<m; i++) {
717ba8c8a56SBarry Smith       ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr);
718ba8c8a56SBarry Smith       ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr);
719ba8c8a56SBarry Smith       ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr);
72039ddd567SLois Curfman McInnes       row++;
7218965ea79SLois Curfman McInnes     }
7228965ea79SLois Curfman McInnes 
7236d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
7246d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
725b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
726b9b97703SBarry Smith     if (!rank) {
7277566de4bSShri Abhyankar       ierr = PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
7287566de4bSShri Abhyankar       /* Set the type name to MATMPIDense so that the correct type can be printed out by PetscObjectPrintClassNamePrefixType() in MatView_SeqDense_ASCII()*/
729dd2fa690SBarry Smith       ierr = PetscStrcpy(((PetscObject)((Mat_MPIDense*)(A->data))->A)->type_name,MATMPIDENSE);CHKERRQ(ierr);
7306831982aSBarry Smith       ierr = MatView(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr);
7318965ea79SLois Curfman McInnes     }
732b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
733b0a32e0cSBarry Smith     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
7346bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
7358965ea79SLois Curfman McInnes   }
7363a40ed3dSBarry Smith   PetscFunctionReturn(0);
7378965ea79SLois Curfman McInnes }
7388965ea79SLois Curfman McInnes 
7394a2ae208SSatish Balay #undef __FUNCT__
7404a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense"
741dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer)
7428965ea79SLois Curfman McInnes {
743dfbe8321SBarry Smith   PetscErrorCode ierr;
744ace3abfcSBarry Smith   PetscBool      iascii,isbinary,isdraw,issocket;
7458965ea79SLois Curfman McInnes 
746433994e6SBarry Smith   PetscFunctionBegin;
747251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
748251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
749251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
750251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
7510f5bd95cSBarry Smith 
75232077d6dSBarry Smith   if (iascii || issocket || isdraw) {
753f1af5d2fSBarry Smith     ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
7540f5bd95cSBarry Smith   } else if (isbinary) {
7553a40ed3dSBarry Smith     ierr = MatView_MPIDense_Binary(mat,viewer);CHKERRQ(ierr);
75611aeaf0aSBarry Smith   }
7573a40ed3dSBarry Smith   PetscFunctionReturn(0);
7588965ea79SLois Curfman McInnes }
7598965ea79SLois Curfman McInnes 
7604a2ae208SSatish Balay #undef __FUNCT__
7614a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIDense"
762dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info)
7638965ea79SLois Curfman McInnes {
7643501a2bdSLois Curfman McInnes   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
7653501a2bdSLois Curfman McInnes   Mat            mdn  = mat->A;
766dfbe8321SBarry Smith   PetscErrorCode ierr;
767329f5518SBarry Smith   PetscReal      isend[5],irecv[5];
7688965ea79SLois Curfman McInnes 
7693a40ed3dSBarry Smith   PetscFunctionBegin;
7704e220ebcSLois Curfman McInnes   info->block_size = 1.0;
7712205254eSKarl Rupp 
7724e220ebcSLois Curfman McInnes   ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr);
7732205254eSKarl Rupp 
7744e220ebcSLois Curfman McInnes   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
7754e220ebcSLois Curfman McInnes   isend[3] = info->memory;  isend[4] = info->mallocs;
7768965ea79SLois Curfman McInnes   if (flag == MAT_LOCAL) {
7774e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
7784e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
7794e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
7804e220ebcSLois Curfman McInnes     info->memory       = isend[3];
7814e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
7828965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
783ce94432eSBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
7842205254eSKarl Rupp 
7854e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
7864e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
7874e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
7884e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
7894e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
7908965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
791ce94432eSBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
7922205254eSKarl Rupp 
7934e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
7944e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
7954e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
7964e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
7974e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
7988965ea79SLois Curfman McInnes   }
7994e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
8004e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
8014e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
8023a40ed3dSBarry Smith   PetscFunctionReturn(0);
8038965ea79SLois Curfman McInnes }
8048965ea79SLois Curfman McInnes 
8054a2ae208SSatish Balay #undef __FUNCT__
8064a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIDense"
807ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg)
8088965ea79SLois Curfman McInnes {
80939ddd567SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
810dfbe8321SBarry Smith   PetscErrorCode ierr;
8118965ea79SLois Curfman McInnes 
8123a40ed3dSBarry Smith   PetscFunctionBegin;
81312c028f9SKris Buschelman   switch (op) {
814512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
81512c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
81612c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
8174e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
81812c028f9SKris Buschelman     break;
81912c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
8204e0d8c25SBarry Smith     a->roworiented = flg;
8212205254eSKarl Rupp 
8224e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
82312c028f9SKris Buschelman     break;
8244e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
82513fa8e87SLisandro Dalcin   case MAT_KEEP_NONZERO_PATTERN:
82612c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
827290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
82812c028f9SKris Buschelman     break;
82912c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
8304e0d8c25SBarry Smith     a->donotstash = flg;
83112c028f9SKris Buschelman     break;
83277e54ba9SKris Buschelman   case MAT_SYMMETRIC:
83377e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
8349a4540c5SBarry Smith   case MAT_HERMITIAN:
8359a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
836600fe468SBarry Smith   case MAT_IGNORE_LOWER_TRIANGULAR:
837290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
83877e54ba9SKris Buschelman     break;
83912c028f9SKris Buschelman   default:
840e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]);
8413a40ed3dSBarry Smith   }
8423a40ed3dSBarry Smith   PetscFunctionReturn(0);
8438965ea79SLois Curfman McInnes }
8448965ea79SLois Curfman McInnes 
8458965ea79SLois Curfman McInnes 
8464a2ae208SSatish Balay #undef __FUNCT__
8474a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIDense"
848dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr)
8495b2fa520SLois Curfman McInnes {
8505b2fa520SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)A->data;
8515b2fa520SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)mdn->A->data;
85287828ca2SBarry Smith   PetscScalar    *l,*r,x,*v;
853dfbe8321SBarry Smith   PetscErrorCode ierr;
854d0f46423SBarry Smith   PetscInt       i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n;
8555b2fa520SLois Curfman McInnes 
8565b2fa520SLois Curfman McInnes   PetscFunctionBegin;
85772d926a5SLois Curfman McInnes   ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr);
8585b2fa520SLois Curfman McInnes   if (ll) {
85972d926a5SLois Curfman McInnes     ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr);
860e32f2f54SBarry Smith     if (s2a != s2) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %d != %d.", s2a, s2);
8611ebc52fbSHong Zhang     ierr = VecGetArray(ll,&l);CHKERRQ(ierr);
8625b2fa520SLois Curfman McInnes     for (i=0; i<m; i++) {
8635b2fa520SLois Curfman McInnes       x = l[i];
8645b2fa520SLois Curfman McInnes       v = mat->v + i;
8655b2fa520SLois Curfman McInnes       for (j=0; j<n; j++) { (*v) *= x; v+= m;}
8665b2fa520SLois Curfman McInnes     }
8671ebc52fbSHong Zhang     ierr = VecRestoreArray(ll,&l);CHKERRQ(ierr);
868efee365bSSatish Balay     ierr = PetscLogFlops(n*m);CHKERRQ(ierr);
8695b2fa520SLois Curfman McInnes   }
8705b2fa520SLois Curfman McInnes   if (rr) {
871175be7b4SMatthew Knepley     ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr);
872e32f2f54SBarry Smith     if (s3a != s3) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3);
873ca9f406cSSatish Balay     ierr = VecScatterBegin(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
874ca9f406cSSatish Balay     ierr = VecScatterEnd(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
8751ebc52fbSHong Zhang     ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr);
8765b2fa520SLois Curfman McInnes     for (i=0; i<n; i++) {
8775b2fa520SLois Curfman McInnes       x = r[i];
8785b2fa520SLois Curfman McInnes       v = mat->v + i*m;
8792205254eSKarl Rupp       for (j=0; j<m; j++) (*v++) *= x;
8805b2fa520SLois Curfman McInnes     }
8811ebc52fbSHong Zhang     ierr = VecRestoreArray(mdn->lvec,&r);CHKERRQ(ierr);
882efee365bSSatish Balay     ierr = PetscLogFlops(n*m);CHKERRQ(ierr);
8835b2fa520SLois Curfman McInnes   }
8845b2fa520SLois Curfman McInnes   PetscFunctionReturn(0);
8855b2fa520SLois Curfman McInnes }
8865b2fa520SLois Curfman McInnes 
8874a2ae208SSatish Balay #undef __FUNCT__
8884a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIDense"
889dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm)
890096963f5SLois Curfman McInnes {
8913501a2bdSLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)A->data;
8923501a2bdSLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)mdn->A->data;
893dfbe8321SBarry Smith   PetscErrorCode ierr;
89413f74950SBarry Smith   PetscInt       i,j;
895329f5518SBarry Smith   PetscReal      sum = 0.0;
89687828ca2SBarry Smith   PetscScalar    *v  = mat->v;
8973501a2bdSLois Curfman McInnes 
8983a40ed3dSBarry Smith   PetscFunctionBegin;
8993501a2bdSLois Curfman McInnes   if (mdn->size == 1) {
900064f8208SBarry Smith     ierr =  MatNorm(mdn->A,type,nrm);CHKERRQ(ierr);
9013501a2bdSLois Curfman McInnes   } else {
9023501a2bdSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
903d0f46423SBarry Smith       for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) {
904329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
9053501a2bdSLois Curfman McInnes       }
906ce94432eSBarry Smith       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
9078f1a2a5eSBarry Smith       *nrm = PetscSqrtReal(*nrm);
908dc0b31edSSatish Balay       ierr = PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr);
9093a40ed3dSBarry Smith     } else if (type == NORM_1) {
910329f5518SBarry Smith       PetscReal *tmp,*tmp2;
911dcca6d9dSJed Brown       ierr = PetscMalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2);CHKERRQ(ierr);
91274ed9c26SBarry Smith       ierr = PetscMemzero(tmp,A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
91374ed9c26SBarry Smith       ierr = PetscMemzero(tmp2,A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
914064f8208SBarry Smith       *nrm = 0.0;
9153501a2bdSLois Curfman McInnes       v    = mat->v;
916d0f46423SBarry Smith       for (j=0; j<mdn->A->cmap->n; j++) {
917d0f46423SBarry Smith         for (i=0; i<mdn->A->rmap->n; i++) {
91867e560aaSBarry Smith           tmp[j] += PetscAbsScalar(*v);  v++;
9193501a2bdSLois Curfman McInnes         }
9203501a2bdSLois Curfman McInnes       }
921ce94432eSBarry Smith       ierr = MPI_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
922d0f46423SBarry Smith       for (j=0; j<A->cmap->N; j++) {
923064f8208SBarry Smith         if (tmp2[j] > *nrm) *nrm = tmp2[j];
9243501a2bdSLois Curfman McInnes       }
92574ed9c26SBarry Smith       ierr = PetscFree2(tmp,tmp);CHKERRQ(ierr);
926d0f46423SBarry Smith       ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr);
9273a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
928329f5518SBarry Smith       PetscReal ntemp;
9293501a2bdSLois Curfman McInnes       ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr);
930ce94432eSBarry Smith       ierr = MPI_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
931ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm");
9323501a2bdSLois Curfman McInnes   }
9333a40ed3dSBarry Smith   PetscFunctionReturn(0);
9343501a2bdSLois Curfman McInnes }
9353501a2bdSLois Curfman McInnes 
9364a2ae208SSatish Balay #undef __FUNCT__
9374a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIDense"
938fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout)
9393501a2bdSLois Curfman McInnes {
9403501a2bdSLois Curfman McInnes   Mat_MPIDense   *a    = (Mat_MPIDense*)A->data;
9413501a2bdSLois Curfman McInnes   Mat_SeqDense   *Aloc = (Mat_SeqDense*)a->A->data;
9423501a2bdSLois Curfman McInnes   Mat            B;
943d0f46423SBarry Smith   PetscInt       M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart;
9446849ba73SBarry Smith   PetscErrorCode ierr;
94513f74950SBarry Smith   PetscInt       j,i;
94687828ca2SBarry Smith   PetscScalar    *v;
9473501a2bdSLois Curfman McInnes 
9483a40ed3dSBarry Smith   PetscFunctionBegin;
949ce94432eSBarry Smith   if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Supports square matrix only in-place");
950fc4dec0aSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || A == *matout) {
951ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
952d0f46423SBarry Smith     ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr);
9537adad957SLisandro Dalcin     ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr);
9540298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(B,NULL);CHKERRQ(ierr);
955fc4dec0aSBarry Smith   } else {
956fc4dec0aSBarry Smith     B = *matout;
957fc4dec0aSBarry Smith   }
9583501a2bdSLois Curfman McInnes 
959d0f46423SBarry Smith   m    = a->A->rmap->n; n = a->A->cmap->n; v = Aloc->v;
960785e854fSJed Brown   ierr = PetscMalloc1(m,&rwork);CHKERRQ(ierr);
9613501a2bdSLois Curfman McInnes   for (i=0; i<m; i++) rwork[i] = rstart + i;
9621acff37aSSatish Balay   for (j=0; j<n; j++) {
9633501a2bdSLois Curfman McInnes     ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr);
9643501a2bdSLois Curfman McInnes     v   += m;
9653501a2bdSLois Curfman McInnes   }
966606d414cSSatish Balay   ierr = PetscFree(rwork);CHKERRQ(ierr);
9676d4a8577SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
9686d4a8577SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
969815cbec1SBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout != A) {
9703501a2bdSLois Curfman McInnes     *matout = B;
9713501a2bdSLois Curfman McInnes   } else {
972eb6b5d47SBarry Smith     ierr = MatHeaderMerge(A,B);CHKERRQ(ierr);
9733501a2bdSLois Curfman McInnes   }
9743a40ed3dSBarry Smith   PetscFunctionReturn(0);
975096963f5SLois Curfman McInnes }
976096963f5SLois Curfman McInnes 
97744cd7ae7SLois Curfman McInnes 
9786849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*);
979d84338a6SBarry Smith extern PetscErrorCode MatScale_MPIDense(Mat,PetscScalar);
9808965ea79SLois Curfman McInnes 
9814a2ae208SSatish Balay #undef __FUNCT__
9824994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPIDense"
9834994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A)
984273d9f13SBarry Smith {
985dfbe8321SBarry Smith   PetscErrorCode ierr;
986273d9f13SBarry Smith 
987273d9f13SBarry Smith   PetscFunctionBegin;
988273d9f13SBarry Smith   ierr =  MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr);
989273d9f13SBarry Smith   PetscFunctionReturn(0);
990273d9f13SBarry Smith }
991273d9f13SBarry Smith 
99230716080SHong Zhang #undef __FUNCT__
993488007eeSBarry Smith #define __FUNCT__ "MatAXPY_MPIDense"
994488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str)
995488007eeSBarry Smith {
996488007eeSBarry Smith   PetscErrorCode ierr;
997488007eeSBarry Smith   Mat_MPIDense   *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data;
998488007eeSBarry Smith 
999488007eeSBarry Smith   PetscFunctionBegin;
1000488007eeSBarry Smith   ierr = MatAXPY(A->A,alpha,B->A,str);CHKERRQ(ierr);
1001*a3fa217bSJose E. Roman   ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
1002488007eeSBarry Smith   PetscFunctionReturn(0);
1003488007eeSBarry Smith }
1004488007eeSBarry Smith 
1005ba337c44SJed Brown #undef __FUNCT__
1006ba337c44SJed Brown #define __FUNCT__ "MatConjugate_MPIDense"
10077087cfbeSBarry Smith PetscErrorCode  MatConjugate_MPIDense(Mat mat)
1008ba337c44SJed Brown {
1009ba337c44SJed Brown   Mat_MPIDense   *a = (Mat_MPIDense*)mat->data;
1010ba337c44SJed Brown   PetscErrorCode ierr;
1011ba337c44SJed Brown 
1012ba337c44SJed Brown   PetscFunctionBegin;
1013ba337c44SJed Brown   ierr = MatConjugate(a->A);CHKERRQ(ierr);
1014ba337c44SJed Brown   PetscFunctionReturn(0);
1015ba337c44SJed Brown }
1016ba337c44SJed Brown 
1017ba337c44SJed Brown #undef __FUNCT__
1018ba337c44SJed Brown #define __FUNCT__ "MatRealPart_MPIDense"
1019ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A)
1020ba337c44SJed Brown {
1021ba337c44SJed Brown   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
1022ba337c44SJed Brown   PetscErrorCode ierr;
1023ba337c44SJed Brown 
1024ba337c44SJed Brown   PetscFunctionBegin;
1025ba337c44SJed Brown   ierr = MatRealPart(a->A);CHKERRQ(ierr);
1026ba337c44SJed Brown   PetscFunctionReturn(0);
1027ba337c44SJed Brown }
1028ba337c44SJed Brown 
1029ba337c44SJed Brown #undef __FUNCT__
1030ba337c44SJed Brown #define __FUNCT__ "MatImaginaryPart_MPIDense"
1031ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A)
1032ba337c44SJed Brown {
1033ba337c44SJed Brown   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
1034ba337c44SJed Brown   PetscErrorCode ierr;
1035ba337c44SJed Brown 
1036ba337c44SJed Brown   PetscFunctionBegin;
1037ba337c44SJed Brown   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
1038ba337c44SJed Brown   PetscFunctionReturn(0);
1039ba337c44SJed Brown }
1040ba337c44SJed Brown 
10410716a85fSBarry Smith extern PetscErrorCode MatGetColumnNorms_SeqDense(Mat,NormType,PetscReal*);
10420716a85fSBarry Smith #undef __FUNCT__
10430716a85fSBarry Smith #define __FUNCT__ "MatGetColumnNorms_MPIDense"
10440716a85fSBarry Smith PetscErrorCode MatGetColumnNorms_MPIDense(Mat A,NormType type,PetscReal *norms)
10450716a85fSBarry Smith {
10460716a85fSBarry Smith   PetscErrorCode ierr;
10470716a85fSBarry Smith   PetscInt       i,n;
10480716a85fSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*) A->data;
10490716a85fSBarry Smith   PetscReal      *work;
10500716a85fSBarry Smith 
10510716a85fSBarry Smith   PetscFunctionBegin;
10520298fd71SBarry Smith   ierr = MatGetSize(A,NULL,&n);CHKERRQ(ierr);
1053785e854fSJed Brown   ierr = PetscMalloc1(n,&work);CHKERRQ(ierr);
10540716a85fSBarry Smith   ierr = MatGetColumnNorms_SeqDense(a->A,type,work);CHKERRQ(ierr);
10550716a85fSBarry Smith   if (type == NORM_2) {
10560716a85fSBarry Smith     for (i=0; i<n; i++) work[i] *= work[i];
10570716a85fSBarry Smith   }
10580716a85fSBarry Smith   if (type == NORM_INFINITY) {
10590716a85fSBarry Smith     ierr = MPI_Allreduce(work,norms,n,MPIU_REAL,MPIU_MAX,A->hdr.comm);CHKERRQ(ierr);
10600716a85fSBarry Smith   } else {
10610716a85fSBarry Smith     ierr = MPI_Allreduce(work,norms,n,MPIU_REAL,MPIU_SUM,A->hdr.comm);CHKERRQ(ierr);
10620716a85fSBarry Smith   }
10630716a85fSBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
10640716a85fSBarry Smith   if (type == NORM_2) {
10658f1a2a5eSBarry Smith     for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]);
10660716a85fSBarry Smith   }
10670716a85fSBarry Smith   PetscFunctionReturn(0);
10680716a85fSBarry Smith }
10690716a85fSBarry Smith 
107073a71a0fSBarry Smith #undef __FUNCT__
107173a71a0fSBarry Smith #define __FUNCT__ "MatSetRandom_MPIDense"
107273a71a0fSBarry Smith static PetscErrorCode  MatSetRandom_MPIDense(Mat x,PetscRandom rctx)
107373a71a0fSBarry Smith {
107473a71a0fSBarry Smith   Mat_MPIDense   *d = (Mat_MPIDense*)x->data;
107573a71a0fSBarry Smith   PetscErrorCode ierr;
107673a71a0fSBarry Smith   PetscScalar    *a;
107773a71a0fSBarry Smith   PetscInt       m,n,i;
107873a71a0fSBarry Smith 
107973a71a0fSBarry Smith   PetscFunctionBegin;
108073a71a0fSBarry Smith   ierr = MatGetSize(d->A,&m,&n);CHKERRQ(ierr);
10818c778c55SBarry Smith   ierr = MatDenseGetArray(d->A,&a);CHKERRQ(ierr);
108273a71a0fSBarry Smith   for (i=0; i<m*n; i++) {
108373a71a0fSBarry Smith     ierr = PetscRandomGetValue(rctx,a+i);CHKERRQ(ierr);
108473a71a0fSBarry Smith   }
10858c778c55SBarry Smith   ierr = MatDenseRestoreArray(d->A,&a);CHKERRQ(ierr);
108673a71a0fSBarry Smith   PetscFunctionReturn(0);
108773a71a0fSBarry Smith }
108873a71a0fSBarry Smith 
10898965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/
109009dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense,
109109dc0095SBarry Smith                                         MatGetRow_MPIDense,
109209dc0095SBarry Smith                                         MatRestoreRow_MPIDense,
109309dc0095SBarry Smith                                         MatMult_MPIDense,
109497304618SKris Buschelman                                 /*  4*/ MatMultAdd_MPIDense,
10957c922b88SBarry Smith                                         MatMultTranspose_MPIDense,
10967c922b88SBarry Smith                                         MatMultTransposeAdd_MPIDense,
10978965ea79SLois Curfman McInnes                                         0,
109809dc0095SBarry Smith                                         0,
109909dc0095SBarry Smith                                         0,
110097304618SKris Buschelman                                 /* 10*/ 0,
110109dc0095SBarry Smith                                         0,
110209dc0095SBarry Smith                                         0,
110309dc0095SBarry Smith                                         0,
110409dc0095SBarry Smith                                         MatTranspose_MPIDense,
110597304618SKris Buschelman                                 /* 15*/ MatGetInfo_MPIDense,
11066e4ee0c6SHong Zhang                                         MatEqual_MPIDense,
110709dc0095SBarry Smith                                         MatGetDiagonal_MPIDense,
11085b2fa520SLois Curfman McInnes                                         MatDiagonalScale_MPIDense,
110909dc0095SBarry Smith                                         MatNorm_MPIDense,
111097304618SKris Buschelman                                 /* 20*/ MatAssemblyBegin_MPIDense,
111109dc0095SBarry Smith                                         MatAssemblyEnd_MPIDense,
111209dc0095SBarry Smith                                         MatSetOption_MPIDense,
111309dc0095SBarry Smith                                         MatZeroEntries_MPIDense,
1114d519adbfSMatthew Knepley                                 /* 24*/ MatZeroRows_MPIDense,
1115919b68f7SBarry Smith                                         0,
111601b82886SBarry Smith                                         0,
111701b82886SBarry Smith                                         0,
111801b82886SBarry Smith                                         0,
11194994cf47SJed Brown                                 /* 29*/ MatSetUp_MPIDense,
1120273d9f13SBarry Smith                                         0,
112109dc0095SBarry Smith                                         0,
11228c778c55SBarry Smith                                         0,
11238c778c55SBarry Smith                                         0,
1124d519adbfSMatthew Knepley                                 /* 34*/ MatDuplicate_MPIDense,
112509dc0095SBarry Smith                                         0,
112609dc0095SBarry Smith                                         0,
112709dc0095SBarry Smith                                         0,
112809dc0095SBarry Smith                                         0,
1129d519adbfSMatthew Knepley                                 /* 39*/ MatAXPY_MPIDense,
11302ce60cd0SSatish Balay                                         MatGetSubMatrices_MPIDense,
113109dc0095SBarry Smith                                         0,
113209dc0095SBarry Smith                                         MatGetValues_MPIDense,
113309dc0095SBarry Smith                                         0,
1134d519adbfSMatthew Knepley                                 /* 44*/ 0,
113509dc0095SBarry Smith                                         MatScale_MPIDense,
113609dc0095SBarry Smith                                         0,
113709dc0095SBarry Smith                                         0,
113809dc0095SBarry Smith                                         0,
113973a71a0fSBarry Smith                                 /* 49*/ MatSetRandom_MPIDense,
114009dc0095SBarry Smith                                         0,
114109dc0095SBarry Smith                                         0,
114209dc0095SBarry Smith                                         0,
114309dc0095SBarry Smith                                         0,
1144d519adbfSMatthew Knepley                                 /* 54*/ 0,
114509dc0095SBarry Smith                                         0,
114609dc0095SBarry Smith                                         0,
114709dc0095SBarry Smith                                         0,
114809dc0095SBarry Smith                                         0,
1149d519adbfSMatthew Knepley                                 /* 59*/ MatGetSubMatrix_MPIDense,
1150b9b97703SBarry Smith                                         MatDestroy_MPIDense,
1151b9b97703SBarry Smith                                         MatView_MPIDense,
1152357abbc8SBarry Smith                                         0,
115397304618SKris Buschelman                                         0,
1154d519adbfSMatthew Knepley                                 /* 64*/ 0,
115597304618SKris Buschelman                                         0,
115697304618SKris Buschelman                                         0,
115797304618SKris Buschelman                                         0,
115897304618SKris Buschelman                                         0,
1159d519adbfSMatthew Knepley                                 /* 69*/ 0,
116097304618SKris Buschelman                                         0,
116197304618SKris Buschelman                                         0,
116297304618SKris Buschelman                                         0,
116397304618SKris Buschelman                                         0,
1164d519adbfSMatthew Knepley                                 /* 74*/ 0,
116597304618SKris Buschelman                                         0,
116697304618SKris Buschelman                                         0,
116797304618SKris Buschelman                                         0,
116897304618SKris Buschelman                                         0,
1169d519adbfSMatthew Knepley                                 /* 79*/ 0,
117097304618SKris Buschelman                                         0,
117197304618SKris Buschelman                                         0,
117297304618SKris Buschelman                                         0,
11735bba2384SShri Abhyankar                                 /* 83*/ MatLoad_MPIDense,
1174865e5f61SKris Buschelman                                         0,
1175865e5f61SKris Buschelman                                         0,
1176865e5f61SKris Buschelman                                         0,
1177865e5f61SKris Buschelman                                         0,
1178865e5f61SKris Buschelman                                         0,
1179d519adbfSMatthew Knepley                                 /* 89*/
1180865e5f61SKris Buschelman                                         0,
1181865e5f61SKris Buschelman                                         0,
1182865e5f61SKris Buschelman                                         0,
11832fbe02b9SBarry Smith                                         0,
1184ba337c44SJed Brown                                         0,
1185d519adbfSMatthew Knepley                                 /* 94*/ 0,
1186865e5f61SKris Buschelman                                         0,
1187865e5f61SKris Buschelman                                         0,
1188ba337c44SJed Brown                                         0,
1189ba337c44SJed Brown                                         0,
1190ba337c44SJed Brown                                 /* 99*/ 0,
1191ba337c44SJed Brown                                         0,
1192ba337c44SJed Brown                                         0,
1193ba337c44SJed Brown                                         MatConjugate_MPIDense,
1194ba337c44SJed Brown                                         0,
1195ba337c44SJed Brown                                 /*104*/ 0,
1196ba337c44SJed Brown                                         MatRealPart_MPIDense,
1197ba337c44SJed Brown                                         MatImaginaryPart_MPIDense,
119886d161a7SShri Abhyankar                                         0,
119986d161a7SShri Abhyankar                                         0,
120086d161a7SShri Abhyankar                                 /*109*/ 0,
120186d161a7SShri Abhyankar                                         0,
120286d161a7SShri Abhyankar                                         0,
120386d161a7SShri Abhyankar                                         0,
120486d161a7SShri Abhyankar                                         0,
120586d161a7SShri Abhyankar                                 /*114*/ 0,
120686d161a7SShri Abhyankar                                         0,
120786d161a7SShri Abhyankar                                         0,
120886d161a7SShri Abhyankar                                         0,
120986d161a7SShri Abhyankar                                         0,
121086d161a7SShri Abhyankar                                 /*119*/ 0,
121186d161a7SShri Abhyankar                                         0,
121286d161a7SShri Abhyankar                                         0,
12130716a85fSBarry Smith                                         0,
12140716a85fSBarry Smith                                         0,
12150716a85fSBarry Smith                                 /*124*/ 0,
12163964eb88SJed Brown                                         MatGetColumnNorms_MPIDense,
12173964eb88SJed Brown                                         0,
12183964eb88SJed Brown                                         0,
12193964eb88SJed Brown                                         0,
12203964eb88SJed Brown                                 /*129*/ 0,
12213964eb88SJed Brown                                         0,
12223964eb88SJed Brown                                         0,
12233964eb88SJed Brown                                         0,
12243964eb88SJed Brown                                         0,
12253964eb88SJed Brown                                 /*134*/ 0,
12263964eb88SJed Brown                                         0,
12273964eb88SJed Brown                                         0,
12283964eb88SJed Brown                                         0,
12293964eb88SJed Brown                                         0,
12303964eb88SJed Brown                                 /*139*/ 0,
1231f9426fe0SMark Adams                                         0,
12323964eb88SJed Brown                                         0
1233ba337c44SJed Brown };
12348965ea79SLois Curfman McInnes 
12354a2ae208SSatish Balay #undef __FUNCT__
1236a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIDenseSetPreallocation_MPIDense"
12377087cfbeSBarry Smith PetscErrorCode  MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data)
1238a23d5eceSKris Buschelman {
1239a23d5eceSKris Buschelman   Mat_MPIDense   *a;
1240dfbe8321SBarry Smith   PetscErrorCode ierr;
1241a23d5eceSKris Buschelman 
1242a23d5eceSKris Buschelman   PetscFunctionBegin;
1243a23d5eceSKris Buschelman   mat->preallocated = PETSC_TRUE;
1244a23d5eceSKris Buschelman   /* Note:  For now, when data is specified above, this assumes the user correctly
1245a23d5eceSKris Buschelman    allocates the local dense storage space.  We should add error checking. */
1246a23d5eceSKris Buschelman 
1247a23d5eceSKris Buschelman   a       = (Mat_MPIDense*)mat->data;
124834ef9618SShri Abhyankar   ierr    = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr);
124934ef9618SShri Abhyankar   ierr    = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr);
125034ef9618SShri Abhyankar   a->nvec = mat->cmap->n;
125134ef9618SShri Abhyankar 
1252f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr);
1253d0f46423SBarry Smith   ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr);
12545c5985e7SKris Buschelman   ierr = MatSetType(a->A,MATSEQDENSE);CHKERRQ(ierr);
12555c5985e7SKris Buschelman   ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr);
12563bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
1257a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1258a23d5eceSKris Buschelman }
1259a23d5eceSKris Buschelman 
1260a23d5eceSKris Buschelman #undef __FUNCT__
12614a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIDense"
12628cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat)
1263273d9f13SBarry Smith {
1264273d9f13SBarry Smith   Mat_MPIDense   *a;
1265dfbe8321SBarry Smith   PetscErrorCode ierr;
1266273d9f13SBarry Smith 
1267273d9f13SBarry Smith   PetscFunctionBegin;
1268b00a9115SJed Brown   ierr      = PetscNewLog(mat,&a);CHKERRQ(ierr);
1269b0a32e0cSBarry Smith   mat->data = (void*)a;
1270273d9f13SBarry Smith   ierr      = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1271273d9f13SBarry Smith 
1272273d9f13SBarry Smith   mat->insertmode = NOT_SET_VALUES;
1273ce94432eSBarry Smith   ierr            = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&a->rank);CHKERRQ(ierr);
1274ce94432eSBarry Smith   ierr            = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&a->size);CHKERRQ(ierr);
1275273d9f13SBarry Smith 
1276273d9f13SBarry Smith   /* build cache for off array entries formed */
1277273d9f13SBarry Smith   a->donotstash = PETSC_FALSE;
12782205254eSKarl Rupp 
1279ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash);CHKERRQ(ierr);
1280273d9f13SBarry Smith 
1281273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
1282273d9f13SBarry Smith   a->lvec        = 0;
1283273d9f13SBarry Smith   a->Mvctx       = 0;
1284273d9f13SBarry Smith   a->roworiented = PETSC_TRUE;
1285273d9f13SBarry Smith 
1286bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense);CHKERRQ(ierr);
1287bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense);CHKERRQ(ierr);
12888c778c55SBarry Smith 
1289bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPIDense);CHKERRQ(ierr);
1290bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr);
1291bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",MatMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr);
1292bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr);
1293bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr);
12948949adfdSHong Zhang 
12958949adfdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMult_mpiaij_mpidense_C",MatTransposeMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr);
12968949adfdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",MatTransposeMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr);
12978949adfdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",MatTransposeMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr);
129838aed534SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr);
1299273d9f13SBarry Smith   PetscFunctionReturn(0);
1300273d9f13SBarry Smith }
1301273d9f13SBarry Smith 
1302209238afSKris Buschelman /*MC
1303002d173eSKris Buschelman    MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices.
1304209238afSKris Buschelman 
1305209238afSKris Buschelman    This matrix type is identical to MATSEQDENSE when constructed with a single process communicator,
1306209238afSKris Buschelman    and MATMPIDENSE otherwise.
1307209238afSKris Buschelman 
1308209238afSKris Buschelman    Options Database Keys:
1309209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions()
1310209238afSKris Buschelman 
1311209238afSKris Buschelman   Level: beginner
1312209238afSKris Buschelman 
131301b82886SBarry Smith 
1314209238afSKris Buschelman .seealso: MatCreateMPIDense,MATSEQDENSE,MATMPIDENSE
1315209238afSKris Buschelman M*/
1316209238afSKris Buschelman 
13174a2ae208SSatish Balay #undef __FUNCT__
13184a2ae208SSatish Balay #define __FUNCT__ "MatMPIDenseSetPreallocation"
1319273d9f13SBarry Smith /*@C
1320273d9f13SBarry Smith    MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries
1321273d9f13SBarry Smith 
1322273d9f13SBarry Smith    Not collective
1323273d9f13SBarry Smith 
1324273d9f13SBarry Smith    Input Parameters:
1325273d9f13SBarry Smith .  A - the matrix
13260298fd71SBarry Smith -  data - optional location of matrix data.  Set data=NULL for PETSc
1327273d9f13SBarry Smith    to control all matrix memory allocation.
1328273d9f13SBarry Smith 
1329273d9f13SBarry Smith    Notes:
1330273d9f13SBarry Smith    The dense format is fully compatible with standard Fortran 77
1331273d9f13SBarry Smith    storage by columns.
1332273d9f13SBarry Smith 
1333273d9f13SBarry Smith    The data input variable is intended primarily for Fortran programmers
1334273d9f13SBarry Smith    who wish to allocate their own matrix memory space.  Most users should
13350298fd71SBarry Smith    set data=NULL.
1336273d9f13SBarry Smith 
1337273d9f13SBarry Smith    Level: intermediate
1338273d9f13SBarry Smith 
1339273d9f13SBarry Smith .keywords: matrix,dense, parallel
1340273d9f13SBarry Smith 
1341273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues()
1342273d9f13SBarry Smith @*/
13437087cfbeSBarry Smith PetscErrorCode  MatMPIDenseSetPreallocation(Mat mat,PetscScalar *data)
1344273d9f13SBarry Smith {
13454ac538c5SBarry Smith   PetscErrorCode ierr;
1346273d9f13SBarry Smith 
1347273d9f13SBarry Smith   PetscFunctionBegin;
13484ac538c5SBarry Smith   ierr = PetscTryMethod(mat,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(mat,data));CHKERRQ(ierr);
1349273d9f13SBarry Smith   PetscFunctionReturn(0);
1350273d9f13SBarry Smith }
1351273d9f13SBarry Smith 
13524a2ae208SSatish Balay #undef __FUNCT__
135369b1f4b7SBarry Smith #define __FUNCT__ "MatCreateDense"
13548965ea79SLois Curfman McInnes /*@C
135569b1f4b7SBarry Smith    MatCreateDense - Creates a parallel matrix in dense format.
13568965ea79SLois Curfman McInnes 
1357db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
1358db81eaa0SLois Curfman McInnes 
13598965ea79SLois Curfman McInnes    Input Parameters:
1360db81eaa0SLois Curfman McInnes +  comm - MPI communicator
13618965ea79SLois Curfman McInnes .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1362db81eaa0SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
13638965ea79SLois Curfman McInnes .  M - number of global rows (or PETSC_DECIDE to have calculated if m is given)
1364db81eaa0SLois Curfman McInnes .  N - number of global columns (or PETSC_DECIDE to have calculated if n is given)
13650298fd71SBarry Smith -  data - optional location of matrix data.  Set data=NULL (NULL_SCALAR for Fortran users) for PETSc
1366dfc5480cSLois Curfman McInnes    to control all matrix memory allocation.
13678965ea79SLois Curfman McInnes 
13688965ea79SLois Curfman McInnes    Output Parameter:
1369477f1c0bSLois Curfman McInnes .  A - the matrix
13708965ea79SLois Curfman McInnes 
1371b259b22eSLois Curfman McInnes    Notes:
137239ddd567SLois Curfman McInnes    The dense format is fully compatible with standard Fortran 77
137339ddd567SLois Curfman McInnes    storage by columns.
13748965ea79SLois Curfman McInnes 
137518f449edSLois Curfman McInnes    The data input variable is intended primarily for Fortran programmers
137618f449edSLois Curfman McInnes    who wish to allocate their own matrix memory space.  Most users should
13770298fd71SBarry Smith    set data=NULL (NULL_SCALAR for Fortran users).
137818f449edSLois Curfman McInnes 
13798965ea79SLois Curfman McInnes    The user MUST specify either the local or global matrix dimensions
13808965ea79SLois Curfman McInnes    (possibly both).
13818965ea79SLois Curfman McInnes 
1382027ccd11SLois Curfman McInnes    Level: intermediate
1383027ccd11SLois Curfman McInnes 
138439ddd567SLois Curfman McInnes .keywords: matrix,dense, parallel
13858965ea79SLois Curfman McInnes 
138639ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues()
13878965ea79SLois Curfman McInnes @*/
138869b1f4b7SBarry Smith PetscErrorCode  MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A)
13898965ea79SLois Curfman McInnes {
13906849ba73SBarry Smith   PetscErrorCode ierr;
139113f74950SBarry Smith   PetscMPIInt    size;
13928965ea79SLois Curfman McInnes 
13933a40ed3dSBarry Smith   PetscFunctionBegin;
1394f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
1395f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
1396273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1397273d9f13SBarry Smith   if (size > 1) {
1398273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr);
1399273d9f13SBarry Smith     ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr);
1400273d9f13SBarry Smith   } else {
1401273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr);
1402273d9f13SBarry Smith     ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr);
14038c469469SLois Curfman McInnes   }
14043a40ed3dSBarry Smith   PetscFunctionReturn(0);
14058965ea79SLois Curfman McInnes }
14068965ea79SLois Curfman McInnes 
14074a2ae208SSatish Balay #undef __FUNCT__
14084a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIDense"
14096849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat)
14108965ea79SLois Curfman McInnes {
14118965ea79SLois Curfman McInnes   Mat            mat;
14123501a2bdSLois Curfman McInnes   Mat_MPIDense   *a,*oldmat = (Mat_MPIDense*)A->data;
1413dfbe8321SBarry Smith   PetscErrorCode ierr;
14148965ea79SLois Curfman McInnes 
14153a40ed3dSBarry Smith   PetscFunctionBegin;
14168965ea79SLois Curfman McInnes   *newmat = 0;
1417ce94432eSBarry Smith   ierr    = MatCreate(PetscObjectComm((PetscObject)A),&mat);CHKERRQ(ierr);
1418d0f46423SBarry Smith   ierr    = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
14197adad957SLisandro Dalcin   ierr    = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr);
1420834f8fabSBarry Smith   a       = (Mat_MPIDense*)mat->data;
1421e04c1aa4SHong Zhang   ierr    = PetscMemcpy(mat->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
14225aa7edbeSHong Zhang 
1423d5f3da31SBarry Smith   mat->factortype   = A->factortype;
1424c456f294SBarry Smith   mat->assembled    = PETSC_TRUE;
1425273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
14268965ea79SLois Curfman McInnes 
14278965ea79SLois Curfman McInnes   a->size         = oldmat->size;
14288965ea79SLois Curfman McInnes   a->rank         = oldmat->rank;
1429e0fa3b82SLois Curfman McInnes   mat->insertmode = NOT_SET_VALUES;
1430b9b97703SBarry Smith   a->nvec         = oldmat->nvec;
14313782ba37SSatish Balay   a->donotstash   = oldmat->donotstash;
1432e04c1aa4SHong Zhang 
14331e1e43feSBarry Smith   ierr = PetscLayoutReference(A->rmap,&mat->rmap);CHKERRQ(ierr);
14341e1e43feSBarry Smith   ierr = PetscLayoutReference(A->cmap,&mat->cmap);CHKERRQ(ierr);
14358965ea79SLois Curfman McInnes 
1436329f5518SBarry Smith   ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr);
14375609ef8eSBarry Smith   ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
14383bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
143901b82886SBarry Smith 
14408965ea79SLois Curfman McInnes   *newmat = mat;
14413a40ed3dSBarry Smith   PetscFunctionReturn(0);
14428965ea79SLois Curfman McInnes }
14438965ea79SLois Curfman McInnes 
14444a2ae208SSatish Balay #undef __FUNCT__
14455bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPIDense_DenseInFile"
14465bba2384SShri Abhyankar PetscErrorCode MatLoad_MPIDense_DenseInFile(MPI_Comm comm,PetscInt fd,PetscInt M,PetscInt N,Mat newmat,PetscInt sizesset)
144786d161a7SShri Abhyankar {
144886d161a7SShri Abhyankar   PetscErrorCode ierr;
144986d161a7SShri Abhyankar   PetscMPIInt    rank,size;
145086d161a7SShri Abhyankar   PetscInt       *rowners,i,m,nz,j;
145186d161a7SShri Abhyankar   PetscScalar    *array,*vals,*vals_ptr;
145286d161a7SShri Abhyankar 
145386d161a7SShri Abhyankar   PetscFunctionBegin;
145486d161a7SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
145586d161a7SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
145686d161a7SShri Abhyankar 
145786d161a7SShri Abhyankar   /* determine ownership of all rows */
145886d161a7SShri Abhyankar   if (newmat->rmap->n < 0) m = M/size + ((M % size) > rank);
145986d161a7SShri Abhyankar   else m = newmat->rmap->n;
1460785e854fSJed Brown   ierr       = PetscMalloc1((size+2),&rowners);CHKERRQ(ierr);
146186d161a7SShri Abhyankar   ierr       = MPI_Allgather(&m,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr);
146286d161a7SShri Abhyankar   rowners[0] = 0;
146386d161a7SShri Abhyankar   for (i=2; i<=size; i++) {
146486d161a7SShri Abhyankar     rowners[i] += rowners[i-1];
146586d161a7SShri Abhyankar   }
146686d161a7SShri Abhyankar 
146786d161a7SShri Abhyankar   if (!sizesset) {
146886d161a7SShri Abhyankar     ierr = MatSetSizes(newmat,m,PETSC_DECIDE,M,N);CHKERRQ(ierr);
146986d161a7SShri Abhyankar   }
14700298fd71SBarry Smith   ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr);
14718c778c55SBarry Smith   ierr = MatDenseGetArray(newmat,&array);CHKERRQ(ierr);
147286d161a7SShri Abhyankar 
147386d161a7SShri Abhyankar   if (!rank) {
1474785e854fSJed Brown     ierr = PetscMalloc1(m*N,&vals);CHKERRQ(ierr);
147586d161a7SShri Abhyankar 
147686d161a7SShri Abhyankar     /* read in my part of the matrix numerical values  */
147786d161a7SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,m*N,PETSC_SCALAR);CHKERRQ(ierr);
147886d161a7SShri Abhyankar 
147986d161a7SShri Abhyankar     /* insert into matrix-by row (this is why cannot directly read into array */
148086d161a7SShri Abhyankar     vals_ptr = vals;
148186d161a7SShri Abhyankar     for (i=0; i<m; i++) {
148286d161a7SShri Abhyankar       for (j=0; j<N; j++) {
148386d161a7SShri Abhyankar         array[i + j*m] = *vals_ptr++;
148486d161a7SShri Abhyankar       }
148586d161a7SShri Abhyankar     }
148686d161a7SShri Abhyankar 
148786d161a7SShri Abhyankar     /* read in other processors and ship out */
148886d161a7SShri Abhyankar     for (i=1; i<size; i++) {
148986d161a7SShri Abhyankar       nz   = (rowners[i+1] - rowners[i])*N;
149086d161a7SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
1491a25532f0SBarry Smith       ierr = MPIULong_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)(newmat))->tag,comm);CHKERRQ(ierr);
149286d161a7SShri Abhyankar     }
149386d161a7SShri Abhyankar   } else {
149486d161a7SShri Abhyankar     /* receive numeric values */
1495785e854fSJed Brown     ierr = PetscMalloc1(m*N,&vals);CHKERRQ(ierr);
149686d161a7SShri Abhyankar 
149786d161a7SShri Abhyankar     /* receive message of values*/
1498a25532f0SBarry Smith     ierr = MPIULong_Recv(vals,m*N,MPIU_SCALAR,0,((PetscObject)(newmat))->tag,comm);CHKERRQ(ierr);
149986d161a7SShri Abhyankar 
150086d161a7SShri Abhyankar     /* insert into matrix-by row (this is why cannot directly read into array */
150186d161a7SShri Abhyankar     vals_ptr = vals;
150286d161a7SShri Abhyankar     for (i=0; i<m; i++) {
150386d161a7SShri Abhyankar       for (j=0; j<N; j++) {
150486d161a7SShri Abhyankar         array[i + j*m] = *vals_ptr++;
150586d161a7SShri Abhyankar       }
150686d161a7SShri Abhyankar     }
150786d161a7SShri Abhyankar   }
15088c778c55SBarry Smith   ierr = MatDenseRestoreArray(newmat,&array);CHKERRQ(ierr);
150986d161a7SShri Abhyankar   ierr = PetscFree(rowners);CHKERRQ(ierr);
151086d161a7SShri Abhyankar   ierr = PetscFree(vals);CHKERRQ(ierr);
151186d161a7SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
151286d161a7SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
151386d161a7SShri Abhyankar   PetscFunctionReturn(0);
151486d161a7SShri Abhyankar }
151586d161a7SShri Abhyankar 
151686d161a7SShri Abhyankar #undef __FUNCT__
15175bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPIDense"
1518112444f4SShri Abhyankar PetscErrorCode MatLoad_MPIDense(Mat newmat,PetscViewer viewer)
151986d161a7SShri Abhyankar {
152086d161a7SShri Abhyankar   PetscScalar    *vals,*svals;
1521ce94432eSBarry Smith   MPI_Comm       comm;
152286d161a7SShri Abhyankar   MPI_Status     status;
152386d161a7SShri Abhyankar   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*rowners,*sndcounts,m,maxnz;
152486d161a7SShri Abhyankar   PetscInt       header[4],*rowlengths = 0,M,N,*cols;
152586d161a7SShri Abhyankar   PetscInt       *ourlens,*procsnz = 0,*offlens,jj,*mycols,*smycols;
152686d161a7SShri Abhyankar   PetscInt       i,nz,j,rstart,rend,sizesset=1,grows,gcols;
152786d161a7SShri Abhyankar   int            fd;
152886d161a7SShri Abhyankar   PetscErrorCode ierr;
152986d161a7SShri Abhyankar 
153086d161a7SShri Abhyankar   PetscFunctionBegin;
1531ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
153286d161a7SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
153386d161a7SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
153486d161a7SShri Abhyankar   if (!rank) {
153586d161a7SShri Abhyankar     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
153686d161a7SShri Abhyankar     ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr);
153786d161a7SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
153886d161a7SShri Abhyankar   }
153986d161a7SShri Abhyankar   if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0;
154086d161a7SShri Abhyankar 
154186d161a7SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
154286d161a7SShri Abhyankar   M    = header[1]; N = header[2]; nz = header[3];
154386d161a7SShri Abhyankar 
154486d161a7SShri Abhyankar   /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */
154586d161a7SShri Abhyankar   if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M;
154686d161a7SShri Abhyankar   if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N;
154786d161a7SShri Abhyankar 
154886d161a7SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
154986d161a7SShri Abhyankar   if (sizesset) {
155086d161a7SShri Abhyankar     ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr);
155186d161a7SShri Abhyankar   }
1552abd38a8fSBarry Smith   if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows);
1553abd38a8fSBarry Smith   if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols);
155486d161a7SShri Abhyankar 
155586d161a7SShri Abhyankar   /*
155686d161a7SShri Abhyankar        Handle case where matrix is stored on disk as a dense matrix
155786d161a7SShri Abhyankar   */
155886d161a7SShri Abhyankar   if (nz == MATRIX_BINARY_FORMAT_DENSE) {
15595bba2384SShri Abhyankar     ierr = MatLoad_MPIDense_DenseInFile(comm,fd,M,N,newmat,sizesset);CHKERRQ(ierr);
156086d161a7SShri Abhyankar     PetscFunctionReturn(0);
156186d161a7SShri Abhyankar   }
156286d161a7SShri Abhyankar 
156386d161a7SShri Abhyankar   /* determine ownership of all rows */
15642205254eSKarl Rupp   if (newmat->rmap->n < 0) {
15652205254eSKarl Rupp     ierr = PetscMPIIntCast(M/size + ((M % size) > rank),&m);CHKERRQ(ierr);
15662205254eSKarl Rupp   } else {
15672205254eSKarl Rupp     ierr = PetscMPIIntCast(newmat->rmap->n,&m);CHKERRQ(ierr);
15682205254eSKarl Rupp   }
1569785e854fSJed Brown   ierr       = PetscMalloc1((size+2),&rowners);CHKERRQ(ierr);
157086d161a7SShri Abhyankar   ierr       = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
157186d161a7SShri Abhyankar   rowners[0] = 0;
157286d161a7SShri Abhyankar   for (i=2; i<=size; i++) {
157386d161a7SShri Abhyankar     rowners[i] += rowners[i-1];
157486d161a7SShri Abhyankar   }
157586d161a7SShri Abhyankar   rstart = rowners[rank];
157686d161a7SShri Abhyankar   rend   = rowners[rank+1];
157786d161a7SShri Abhyankar 
157886d161a7SShri Abhyankar   /* distribute row lengths to all processors */
1579dcca6d9dSJed Brown   ierr = PetscMalloc2(rend-rstart,&ourlens,rend-rstart,&offlens);CHKERRQ(ierr);
158086d161a7SShri Abhyankar   if (!rank) {
1581785e854fSJed Brown     ierr = PetscMalloc1(M,&rowlengths);CHKERRQ(ierr);
158286d161a7SShri Abhyankar     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
1583785e854fSJed Brown     ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr);
158486d161a7SShri Abhyankar     for (i=0; i<size; i++) sndcounts[i] = rowners[i+1] - rowners[i];
158586d161a7SShri Abhyankar     ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr);
158686d161a7SShri Abhyankar     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
158786d161a7SShri Abhyankar   } else {
158886d161a7SShri Abhyankar     ierr = MPI_Scatterv(0,0,0,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr);
158986d161a7SShri Abhyankar   }
159086d161a7SShri Abhyankar 
159186d161a7SShri Abhyankar   if (!rank) {
159286d161a7SShri Abhyankar     /* calculate the number of nonzeros on each processor */
1593785e854fSJed Brown     ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr);
159486d161a7SShri Abhyankar     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
159586d161a7SShri Abhyankar     for (i=0; i<size; i++) {
159686d161a7SShri Abhyankar       for (j=rowners[i]; j< rowners[i+1]; j++) {
159786d161a7SShri Abhyankar         procsnz[i] += rowlengths[j];
159886d161a7SShri Abhyankar       }
159986d161a7SShri Abhyankar     }
160086d161a7SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
160186d161a7SShri Abhyankar 
160286d161a7SShri Abhyankar     /* determine max buffer needed and allocate it */
160386d161a7SShri Abhyankar     maxnz = 0;
160486d161a7SShri Abhyankar     for (i=0; i<size; i++) {
160586d161a7SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
160686d161a7SShri Abhyankar     }
1607785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr);
160886d161a7SShri Abhyankar 
160986d161a7SShri Abhyankar     /* read in my part of the matrix column indices  */
161086d161a7SShri Abhyankar     nz   = procsnz[0];
1611785e854fSJed Brown     ierr = PetscMalloc1(nz,&mycols);CHKERRQ(ierr);
161286d161a7SShri Abhyankar     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
161386d161a7SShri Abhyankar 
161486d161a7SShri Abhyankar     /* read in every one elses and ship off */
161586d161a7SShri Abhyankar     for (i=1; i<size; i++) {
161686d161a7SShri Abhyankar       nz   = procsnz[i];
161786d161a7SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
161886d161a7SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
161986d161a7SShri Abhyankar     }
162086d161a7SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
162186d161a7SShri Abhyankar   } else {
162286d161a7SShri Abhyankar     /* determine buffer space needed for message */
162386d161a7SShri Abhyankar     nz = 0;
162486d161a7SShri Abhyankar     for (i=0; i<m; i++) {
162586d161a7SShri Abhyankar       nz += ourlens[i];
162686d161a7SShri Abhyankar     }
1627785e854fSJed Brown     ierr = PetscMalloc1((nz+1),&mycols);CHKERRQ(ierr);
162886d161a7SShri Abhyankar 
162986d161a7SShri Abhyankar     /* receive message of column indices*/
163086d161a7SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
163186d161a7SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
163286d161a7SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
163386d161a7SShri Abhyankar   }
163486d161a7SShri Abhyankar 
163586d161a7SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
163686d161a7SShri Abhyankar   ierr = PetscMemzero(offlens,m*sizeof(PetscInt));CHKERRQ(ierr);
163786d161a7SShri Abhyankar   jj   = 0;
163886d161a7SShri Abhyankar   for (i=0; i<m; i++) {
163986d161a7SShri Abhyankar     for (j=0; j<ourlens[i]; j++) {
164086d161a7SShri Abhyankar       if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++;
164186d161a7SShri Abhyankar       jj++;
164286d161a7SShri Abhyankar     }
164386d161a7SShri Abhyankar   }
164486d161a7SShri Abhyankar 
164586d161a7SShri Abhyankar   /* create our matrix */
16462205254eSKarl Rupp   for (i=0; i<m; i++) ourlens[i] -= offlens[i];
164786d161a7SShri Abhyankar 
164886d161a7SShri Abhyankar   if (!sizesset) {
164986d161a7SShri Abhyankar     ierr = MatSetSizes(newmat,m,PETSC_DECIDE,M,N);CHKERRQ(ierr);
165086d161a7SShri Abhyankar   }
16510298fd71SBarry Smith   ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr);
16522205254eSKarl Rupp   for (i=0; i<m; i++) ourlens[i] += offlens[i];
165386d161a7SShri Abhyankar 
165486d161a7SShri Abhyankar   if (!rank) {
1655785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&vals);CHKERRQ(ierr);
165686d161a7SShri Abhyankar 
165786d161a7SShri Abhyankar     /* read in my part of the matrix numerical values  */
165886d161a7SShri Abhyankar     nz   = procsnz[0];
165986d161a7SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
166086d161a7SShri Abhyankar 
166186d161a7SShri Abhyankar     /* insert into matrix */
166286d161a7SShri Abhyankar     jj      = rstart;
166386d161a7SShri Abhyankar     smycols = mycols;
166486d161a7SShri Abhyankar     svals   = vals;
166586d161a7SShri Abhyankar     for (i=0; i<m; i++) {
166686d161a7SShri Abhyankar       ierr     = MatSetValues(newmat,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
166786d161a7SShri Abhyankar       smycols += ourlens[i];
166886d161a7SShri Abhyankar       svals   += ourlens[i];
166986d161a7SShri Abhyankar       jj++;
167086d161a7SShri Abhyankar     }
167186d161a7SShri Abhyankar 
167286d161a7SShri Abhyankar     /* read in other processors and ship out */
167386d161a7SShri Abhyankar     for (i=1; i<size; i++) {
167486d161a7SShri Abhyankar       nz   = procsnz[i];
167586d161a7SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
167686d161a7SShri Abhyankar       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
167786d161a7SShri Abhyankar     }
167886d161a7SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
167986d161a7SShri Abhyankar   } else {
168086d161a7SShri Abhyankar     /* receive numeric values */
1681785e854fSJed Brown     ierr = PetscMalloc1((nz+1),&vals);CHKERRQ(ierr);
168286d161a7SShri Abhyankar 
168386d161a7SShri Abhyankar     /* receive message of values*/
168486d161a7SShri Abhyankar     ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr);
168586d161a7SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
168686d161a7SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
168786d161a7SShri Abhyankar 
168886d161a7SShri Abhyankar     /* insert into matrix */
168986d161a7SShri Abhyankar     jj      = rstart;
169086d161a7SShri Abhyankar     smycols = mycols;
169186d161a7SShri Abhyankar     svals   = vals;
169286d161a7SShri Abhyankar     for (i=0; i<m; i++) {
169386d161a7SShri Abhyankar       ierr     = MatSetValues(newmat,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
169486d161a7SShri Abhyankar       smycols += ourlens[i];
169586d161a7SShri Abhyankar       svals   += ourlens[i];
169686d161a7SShri Abhyankar       jj++;
169786d161a7SShri Abhyankar     }
169886d161a7SShri Abhyankar   }
169986d161a7SShri Abhyankar   ierr = PetscFree2(ourlens,offlens);CHKERRQ(ierr);
170086d161a7SShri Abhyankar   ierr = PetscFree(vals);CHKERRQ(ierr);
170186d161a7SShri Abhyankar   ierr = PetscFree(mycols);CHKERRQ(ierr);
170286d161a7SShri Abhyankar   ierr = PetscFree(rowners);CHKERRQ(ierr);
170386d161a7SShri Abhyankar 
170486d161a7SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
170586d161a7SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
170686d161a7SShri Abhyankar   PetscFunctionReturn(0);
170786d161a7SShri Abhyankar }
170886d161a7SShri Abhyankar 
170986d161a7SShri Abhyankar #undef __FUNCT__
17106e4ee0c6SHong Zhang #define __FUNCT__ "MatEqual_MPIDense"
1711ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool  *flag)
17126e4ee0c6SHong Zhang {
17136e4ee0c6SHong Zhang   Mat_MPIDense   *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data;
17146e4ee0c6SHong Zhang   Mat            a,b;
1715ace3abfcSBarry Smith   PetscBool      flg;
17166e4ee0c6SHong Zhang   PetscErrorCode ierr;
171790ace30eSBarry Smith 
17186e4ee0c6SHong Zhang   PetscFunctionBegin;
17196e4ee0c6SHong Zhang   a    = matA->A;
17206e4ee0c6SHong Zhang   b    = matB->A;
17216e4ee0c6SHong Zhang   ierr = MatEqual(a,b,&flg);CHKERRQ(ierr);
1722ce94432eSBarry Smith   ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
17236e4ee0c6SHong Zhang   PetscFunctionReturn(0);
17246e4ee0c6SHong Zhang }
172590ace30eSBarry Smith 
1726