xref: /petsc/src/mat/impls/dense/mpi/mpidense.c (revision bca11509f5effeca090a0d43c32015d8daa7ad4e)
1be1d678aSKris Buschelman 
2ed3cc1f0SBarry Smith /*
3ed3cc1f0SBarry Smith    Basic functions for basic parallel dense matrices.
4ed3cc1f0SBarry Smith */
5ed3cc1f0SBarry Smith 
604fea9ffSBarry Smith 
7c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h>    /*I   "petscmat.h"  I*/
88949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h>
9baa3c1c6SHong Zhang #include <petscblaslapack.h>
108965ea79SLois Curfman McInnes 
11ab92ecdeSBarry Smith /*@
12ab92ecdeSBarry Smith 
13ab92ecdeSBarry Smith       MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential
14ab92ecdeSBarry Smith               matrix that represents the operator. For sequential matrices it returns itself.
15ab92ecdeSBarry Smith 
16ab92ecdeSBarry Smith     Input Parameter:
17ab92ecdeSBarry Smith .      A - the Seq or MPI dense matrix
18ab92ecdeSBarry Smith 
19ab92ecdeSBarry Smith     Output Parameter:
20ab92ecdeSBarry Smith .      B - the inner matrix
21ab92ecdeSBarry Smith 
228e6c10adSSatish Balay     Level: intermediate
238e6c10adSSatish Balay 
24ab92ecdeSBarry Smith @*/
25ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B)
26ab92ecdeSBarry Smith {
27ab92ecdeSBarry Smith   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
28ab92ecdeSBarry Smith   PetscErrorCode ierr;
29ace3abfcSBarry Smith   PetscBool      flg;
30ab92ecdeSBarry Smith 
31ab92ecdeSBarry Smith   PetscFunctionBegin;
32251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr);
332205254eSKarl Rupp   if (flg) *B = mat->A;
342205254eSKarl Rupp   else *B = A;
35ab92ecdeSBarry Smith   PetscFunctionReturn(0);
36ab92ecdeSBarry Smith }
37ab92ecdeSBarry Smith 
38ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
39ba8c8a56SBarry Smith {
40ba8c8a56SBarry Smith   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
41ba8c8a56SBarry Smith   PetscErrorCode ierr;
42d0f46423SBarry Smith   PetscInt       lrow,rstart = A->rmap->rstart,rend = A->rmap->rend;
43ba8c8a56SBarry Smith 
44ba8c8a56SBarry Smith   PetscFunctionBegin;
45e7e72b3dSBarry Smith   if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows");
46ba8c8a56SBarry Smith   lrow = row - rstart;
47ba8c8a56SBarry Smith   ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr);
48ba8c8a56SBarry Smith   PetscFunctionReturn(0);
49ba8c8a56SBarry Smith }
50ba8c8a56SBarry Smith 
51ba8c8a56SBarry Smith PetscErrorCode MatRestoreRow_MPIDense(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
52ba8c8a56SBarry Smith {
53ba8c8a56SBarry Smith   PetscErrorCode ierr;
54ba8c8a56SBarry Smith 
55ba8c8a56SBarry Smith   PetscFunctionBegin;
56ba8c8a56SBarry Smith   if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);}
57ba8c8a56SBarry Smith   if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);}
58ba8c8a56SBarry Smith   PetscFunctionReturn(0);
59ba8c8a56SBarry Smith }
60ba8c8a56SBarry Smith 
6111bd1e4dSLisandro Dalcin PetscErrorCode  MatGetDiagonalBlock_MPIDense(Mat A,Mat *a)
620de54da6SSatish Balay {
630de54da6SSatish Balay   Mat_MPIDense   *mdn = (Mat_MPIDense*)A->data;
646849ba73SBarry Smith   PetscErrorCode ierr;
65d0f46423SBarry Smith   PetscInt       m = A->rmap->n,rstart = A->rmap->rstart;
6687828ca2SBarry Smith   PetscScalar    *array;
670de54da6SSatish Balay   MPI_Comm       comm;
6811bd1e4dSLisandro Dalcin   Mat            B;
690de54da6SSatish Balay 
700de54da6SSatish Balay   PetscFunctionBegin;
71e32f2f54SBarry Smith   if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported.");
720de54da6SSatish Balay 
7311bd1e4dSLisandro Dalcin   ierr = PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B);CHKERRQ(ierr);
7411bd1e4dSLisandro Dalcin   if (!B) {
750de54da6SSatish Balay     ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr);
7611bd1e4dSLisandro Dalcin     ierr = MatCreate(comm,&B);CHKERRQ(ierr);
7711bd1e4dSLisandro Dalcin     ierr = MatSetSizes(B,m,m,m,m);CHKERRQ(ierr);
7811bd1e4dSLisandro Dalcin     ierr = MatSetType(B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr);
798c778c55SBarry Smith     ierr = MatDenseGetArray(mdn->A,&array);CHKERRQ(ierr);
8011bd1e4dSLisandro Dalcin     ierr = MatSeqDenseSetPreallocation(B,array+m*rstart);CHKERRQ(ierr);
818c778c55SBarry Smith     ierr = MatDenseRestoreArray(mdn->A,&array);CHKERRQ(ierr);
8211bd1e4dSLisandro Dalcin     ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
8311bd1e4dSLisandro Dalcin     ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
8411bd1e4dSLisandro Dalcin     ierr = PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B);CHKERRQ(ierr);
8511bd1e4dSLisandro Dalcin     *a   = B;
8611bd1e4dSLisandro Dalcin     ierr = MatDestroy(&B);CHKERRQ(ierr);
872205254eSKarl Rupp   } else *a = B;
880de54da6SSatish Balay   PetscFunctionReturn(0);
890de54da6SSatish Balay }
900de54da6SSatish Balay 
9113f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv)
928965ea79SLois Curfman McInnes {
9339b7565bSBarry Smith   Mat_MPIDense   *A = (Mat_MPIDense*)mat->data;
94dfbe8321SBarry Smith   PetscErrorCode ierr;
95d0f46423SBarry Smith   PetscInt       i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row;
96ace3abfcSBarry Smith   PetscBool      roworiented = A->roworiented;
978965ea79SLois Curfman McInnes 
983a40ed3dSBarry Smith   PetscFunctionBegin;
998965ea79SLois Curfman McInnes   for (i=0; i<m; i++) {
1005ef9f2a5SBarry Smith     if (idxm[i] < 0) continue;
101e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
1028965ea79SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
1038965ea79SLois Curfman McInnes       row = idxm[i] - rstart;
10439b7565bSBarry Smith       if (roworiented) {
10539b7565bSBarry Smith         ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr);
1063a40ed3dSBarry Smith       } else {
1078965ea79SLois Curfman McInnes         for (j=0; j<n; j++) {
1085ef9f2a5SBarry Smith           if (idxn[j] < 0) continue;
109e32f2f54SBarry Smith           if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
11039b7565bSBarry Smith           ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr);
11139b7565bSBarry Smith         }
1128965ea79SLois Curfman McInnes       }
1132205254eSKarl Rupp     } else if (!A->donotstash) {
1145080c13bSMatthew G Knepley       mat->assembled = PETSC_FALSE;
11539b7565bSBarry Smith       if (roworiented) {
116b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE);CHKERRQ(ierr);
117d36fbae8SSatish Balay       } else {
118b400d20cSBarry Smith         ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE);CHKERRQ(ierr);
11939b7565bSBarry Smith       }
120b49de8d1SLois Curfman McInnes     }
121b49de8d1SLois Curfman McInnes   }
1223a40ed3dSBarry Smith   PetscFunctionReturn(0);
123b49de8d1SLois Curfman McInnes }
124b49de8d1SLois Curfman McInnes 
12513f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
126b49de8d1SLois Curfman McInnes {
127b49de8d1SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
128dfbe8321SBarry Smith   PetscErrorCode ierr;
129d0f46423SBarry Smith   PetscInt       i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row;
130b49de8d1SLois Curfman McInnes 
1313a40ed3dSBarry Smith   PetscFunctionBegin;
132b49de8d1SLois Curfman McInnes   for (i=0; i<m; i++) {
133e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */
134e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
135b49de8d1SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
136b49de8d1SLois Curfman McInnes       row = idxm[i] - rstart;
137b49de8d1SLois Curfman McInnes       for (j=0; j<n; j++) {
138e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */
139e7e72b3dSBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
140b49de8d1SLois Curfman McInnes         ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr);
141b49de8d1SLois Curfman McInnes       }
142e7e72b3dSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
1438965ea79SLois Curfman McInnes   }
1443a40ed3dSBarry Smith   PetscFunctionReturn(0);
1458965ea79SLois Curfman McInnes }
1468965ea79SLois Curfman McInnes 
147d3042a70SBarry Smith static PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar *array[])
148ff14e315SSatish Balay {
149ff14e315SSatish Balay   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
150dfbe8321SBarry Smith   PetscErrorCode ierr;
151ff14e315SSatish Balay 
1523a40ed3dSBarry Smith   PetscFunctionBegin;
1538c778c55SBarry Smith   ierr = MatDenseGetArray(a->A,array);CHKERRQ(ierr);
1543a40ed3dSBarry Smith   PetscFunctionReturn(0);
155ff14e315SSatish Balay }
156ff14e315SSatish Balay 
157d3042a70SBarry Smith static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A,const PetscScalar array[])
158d3042a70SBarry Smith {
159d3042a70SBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
160d3042a70SBarry Smith   PetscErrorCode ierr;
161d3042a70SBarry Smith 
162d3042a70SBarry Smith   PetscFunctionBegin;
163d3042a70SBarry Smith   ierr = MatDensePlaceArray(a->A,array);CHKERRQ(ierr);
164d3042a70SBarry Smith   PetscFunctionReturn(0);
165d3042a70SBarry Smith }
166d3042a70SBarry Smith 
167d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_MPIDense(Mat A)
168d3042a70SBarry Smith {
169d3042a70SBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
170d3042a70SBarry Smith   PetscErrorCode ierr;
171d3042a70SBarry Smith 
172d3042a70SBarry Smith   PetscFunctionBegin;
173d3042a70SBarry Smith   ierr = MatDenseResetArray(a->A);CHKERRQ(ierr);
174d3042a70SBarry Smith   PetscFunctionReturn(0);
175d3042a70SBarry Smith }
176d3042a70SBarry Smith 
1777dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B)
178ca3fa75bSLois Curfman McInnes {
179ca3fa75bSLois Curfman McInnes   Mat_MPIDense   *mat  = (Mat_MPIDense*)A->data,*newmatd;
180ca3fa75bSLois Curfman McInnes   Mat_SeqDense   *lmat = (Mat_SeqDense*)mat->A->data;
1816849ba73SBarry Smith   PetscErrorCode ierr;
1824aa3045dSJed Brown   PetscInt       i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols;
1835d0c19d7SBarry Smith   const PetscInt *irow,*icol;
18487828ca2SBarry Smith   PetscScalar    *av,*bv,*v = lmat->v;
185ca3fa75bSLois Curfman McInnes   Mat            newmat;
1864aa3045dSJed Brown   IS             iscol_local;
187ca3fa75bSLois Curfman McInnes 
188ca3fa75bSLois Curfman McInnes   PetscFunctionBegin;
1894aa3045dSJed Brown   ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
190ca3fa75bSLois Curfman McInnes   ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr);
1914aa3045dSJed Brown   ierr = ISGetIndices(iscol_local,&icol);CHKERRQ(ierr);
192b9b97703SBarry Smith   ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr);
193b9b97703SBarry Smith   ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr);
1944aa3045dSJed Brown   ierr = ISGetSize(iscol,&Ncols);CHKERRQ(ierr); /* global number of columns, size of iscol_local */
195ca3fa75bSLois Curfman McInnes 
196ca3fa75bSLois Curfman McInnes   /* No parallel redistribution currently supported! Should really check each index set
1977eba5e9cSLois Curfman McInnes      to comfirm that it is OK.  ... Currently supports only submatrix same partitioning as
1987eba5e9cSLois Curfman McInnes      original matrix! */
199ca3fa75bSLois Curfman McInnes 
200ca3fa75bSLois Curfman McInnes   ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr);
2017eba5e9cSLois Curfman McInnes   ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr);
202ca3fa75bSLois Curfman McInnes 
203ca3fa75bSLois Curfman McInnes   /* Check submatrix call */
204ca3fa75bSLois Curfman McInnes   if (scall == MAT_REUSE_MATRIX) {
205e32f2f54SBarry Smith     /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */
2067eba5e9cSLois Curfman McInnes     /* Really need to test rows and column sizes! */
207ca3fa75bSLois Curfman McInnes     newmat = *B;
208ca3fa75bSLois Curfman McInnes   } else {
209ca3fa75bSLois Curfman McInnes     /* Create and fill new matrix */
210ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr);
2114aa3045dSJed Brown     ierr = MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols);CHKERRQ(ierr);
2127adad957SLisandro Dalcin     ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr);
2130298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr);
214ca3fa75bSLois Curfman McInnes   }
215ca3fa75bSLois Curfman McInnes 
216ca3fa75bSLois Curfman McInnes   /* Now extract the data pointers and do the copy, column at a time */
217ca3fa75bSLois Curfman McInnes   newmatd = (Mat_MPIDense*)newmat->data;
218ca3fa75bSLois Curfman McInnes   bv      = ((Mat_SeqDense*)newmatd->A->data)->v;
219ca3fa75bSLois Curfman McInnes 
2204aa3045dSJed Brown   for (i=0; i<Ncols; i++) {
22125a33276SHong Zhang     av = v + ((Mat_SeqDense*)mat->A->data)->lda*icol[i];
222ca3fa75bSLois Curfman McInnes     for (j=0; j<nrows; j++) {
2237eba5e9cSLois Curfman McInnes       *bv++ = av[irow[j] - rstart];
224ca3fa75bSLois Curfman McInnes     }
225ca3fa75bSLois Curfman McInnes   }
226ca3fa75bSLois Curfman McInnes 
227ca3fa75bSLois Curfman McInnes   /* Assemble the matrices so that the correct flags are set */
228ca3fa75bSLois Curfman McInnes   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
229ca3fa75bSLois Curfman McInnes   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
230ca3fa75bSLois Curfman McInnes 
231ca3fa75bSLois Curfman McInnes   /* Free work space */
232ca3fa75bSLois Curfman McInnes   ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr);
2335bdf786aSShri Abhyankar   ierr = ISRestoreIndices(iscol_local,&icol);CHKERRQ(ierr);
23432bb1f2dSLisandro Dalcin   ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
235ca3fa75bSLois Curfman McInnes   *B   = newmat;
236ca3fa75bSLois Curfman McInnes   PetscFunctionReturn(0);
237ca3fa75bSLois Curfman McInnes }
238ca3fa75bSLois Curfman McInnes 
2398c778c55SBarry Smith PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar *array[])
240ff14e315SSatish Balay {
24173a71a0fSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
24273a71a0fSBarry Smith   PetscErrorCode ierr;
24373a71a0fSBarry Smith 
2443a40ed3dSBarry Smith   PetscFunctionBegin;
2458c778c55SBarry Smith   ierr = MatDenseRestoreArray(a->A,array);CHKERRQ(ierr);
2463a40ed3dSBarry Smith   PetscFunctionReturn(0);
247ff14e315SSatish Balay }
248ff14e315SSatish Balay 
249dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode)
2508965ea79SLois Curfman McInnes {
25139ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
252ce94432eSBarry Smith   MPI_Comm       comm;
253dfbe8321SBarry Smith   PetscErrorCode ierr;
25413f74950SBarry Smith   PetscInt       nstash,reallocs;
2558965ea79SLois Curfman McInnes   InsertMode     addv;
2568965ea79SLois Curfman McInnes 
2573a40ed3dSBarry Smith   PetscFunctionBegin;
258ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr);
2598965ea79SLois Curfman McInnes   /* make sure all processors are either in INSERTMODE or ADDMODE */
260b2566f29SBarry Smith   ierr = MPIU_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,comm);CHKERRQ(ierr);
261ce94432eSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Cannot mix adds/inserts on different procs");
262e0fa3b82SLois Curfman McInnes   mat->insertmode = addv; /* in case this processor had no cache */
2638965ea79SLois Curfman McInnes 
264d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
2658798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
266ae15b995SBarry Smith   ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
2673a40ed3dSBarry Smith   PetscFunctionReturn(0);
2688965ea79SLois Curfman McInnes }
2698965ea79SLois Curfman McInnes 
270dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode)
2718965ea79SLois Curfman McInnes {
27239ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn=(Mat_MPIDense*)mat->data;
2736849ba73SBarry Smith   PetscErrorCode ierr;
27413f74950SBarry Smith   PetscInt       i,*row,*col,flg,j,rstart,ncols;
27513f74950SBarry Smith   PetscMPIInt    n;
27687828ca2SBarry Smith   PetscScalar    *val;
2778965ea79SLois Curfman McInnes 
2783a40ed3dSBarry Smith   PetscFunctionBegin;
2798965ea79SLois Curfman McInnes   /*  wait on receives */
2807ef1d9bdSSatish Balay   while (1) {
2818798bf22SSatish Balay     ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
2827ef1d9bdSSatish Balay     if (!flg) break;
2838965ea79SLois Curfman McInnes 
2847ef1d9bdSSatish Balay     for (i=0; i<n;) {
2857ef1d9bdSSatish Balay       /* Now identify the consecutive vals belonging to the same row */
2862205254eSKarl Rupp       for (j=i,rstart=row[j]; j<n; j++) {
2872205254eSKarl Rupp         if (row[j] != rstart) break;
2882205254eSKarl Rupp       }
2897ef1d9bdSSatish Balay       if (j < n) ncols = j-i;
2907ef1d9bdSSatish Balay       else       ncols = n-i;
2917ef1d9bdSSatish Balay       /* Now assemble all these values with a single function call */
2924b4eb8d3SJed Brown       ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr);
2937ef1d9bdSSatish Balay       i    = j;
2948965ea79SLois Curfman McInnes     }
2957ef1d9bdSSatish Balay   }
2968798bf22SSatish Balay   ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
2978965ea79SLois Curfman McInnes 
29839ddd567SLois Curfman McInnes   ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr);
29939ddd567SLois Curfman McInnes   ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr);
3008965ea79SLois Curfman McInnes 
3016d4a8577SBarry Smith   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
30239ddd567SLois Curfman McInnes     ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr);
3038965ea79SLois Curfman McInnes   }
3043a40ed3dSBarry Smith   PetscFunctionReturn(0);
3058965ea79SLois Curfman McInnes }
3068965ea79SLois Curfman McInnes 
307dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A)
3088965ea79SLois Curfman McInnes {
309dfbe8321SBarry Smith   PetscErrorCode ierr;
31039ddd567SLois Curfman McInnes   Mat_MPIDense   *l = (Mat_MPIDense*)A->data;
3113a40ed3dSBarry Smith 
3123a40ed3dSBarry Smith   PetscFunctionBegin;
3133a40ed3dSBarry Smith   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
3143a40ed3dSBarry Smith   PetscFunctionReturn(0);
3158965ea79SLois Curfman McInnes }
3168965ea79SLois Curfman McInnes 
3178965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the
3188965ea79SLois Curfman McInnes    matrix is square and the column and row owerships are identical.
3198965ea79SLois Curfman McInnes    This is a BUG. The only way to fix it seems to be to access
3203501a2bdSLois Curfman McInnes    mdn->A and mdn->B directly and not through the MatZeroRows()
3218965ea79SLois Curfman McInnes    routine.
3228965ea79SLois Curfman McInnes */
3232b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
3248965ea79SLois Curfman McInnes {
32539ddd567SLois Curfman McInnes   Mat_MPIDense      *l = (Mat_MPIDense*)A->data;
3266849ba73SBarry Smith   PetscErrorCode    ierr;
327d0f46423SBarry Smith   PetscInt          i,*owners = A->rmap->range;
32876ec1555SBarry Smith   PetscInt          *sizes,j,idx,nsends;
32913f74950SBarry Smith   PetscInt          nmax,*svalues,*starts,*owner,nrecvs;
3307adad957SLisandro Dalcin   PetscInt          *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source;
33113f74950SBarry Smith   PetscInt          *lens,*lrows,*values;
33213f74950SBarry Smith   PetscMPIInt       n,imdex,rank = l->rank,size = l->size;
333ce94432eSBarry Smith   MPI_Comm          comm;
3348965ea79SLois Curfman McInnes   MPI_Request       *send_waits,*recv_waits;
3358965ea79SLois Curfman McInnes   MPI_Status        recv_status,*send_status;
336ace3abfcSBarry Smith   PetscBool         found;
33797b48c8fSBarry Smith   const PetscScalar *xx;
33897b48c8fSBarry Smith   PetscScalar       *bb;
3398965ea79SLois Curfman McInnes 
3403a40ed3dSBarry Smith   PetscFunctionBegin;
341ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
342ce94432eSBarry Smith   if (A->rmap->N != A->cmap->N) SETERRQ(comm,PETSC_ERR_SUP,"Only handles square matrices");
343b9679d65SBarry Smith   if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only handles matrices with identical column and row ownership");
3448965ea79SLois Curfman McInnes   /*  first count number of contributors to each processor */
345f628708eSJed Brown   ierr = PetscCalloc1(2*size,&sizes);CHKERRQ(ierr);
346037dbc42SBarry Smith   ierr = PetscMalloc1(N+1,&owner);CHKERRQ(ierr);  /* see note*/
3478965ea79SLois Curfman McInnes   for (i=0; i<N; i++) {
3488965ea79SLois Curfman McInnes     idx   = rows[i];
34935d8aa7fSBarry Smith     found = PETSC_FALSE;
3508965ea79SLois Curfman McInnes     for (j=0; j<size; j++) {
3518965ea79SLois Curfman McInnes       if (idx >= owners[j] && idx < owners[j+1]) {
35276ec1555SBarry Smith         sizes[2*j]++; sizes[2*j+1] = 1; owner[i] = j; found = PETSC_TRUE; break;
3538965ea79SLois Curfman McInnes       }
3548965ea79SLois Curfman McInnes     }
355e32f2f54SBarry Smith     if (!found) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Index out of range");
3568965ea79SLois Curfman McInnes   }
3572205254eSKarl Rupp   nsends = 0;
35876ec1555SBarry Smith   for (i=0; i<size; i++) nsends += sizes[2*i+1];
3598965ea79SLois Curfman McInnes 
3608965ea79SLois Curfman McInnes   /* inform other processors of number of messages and max length*/
36176ec1555SBarry Smith   ierr = PetscMaxSum(comm,sizes,&nmax,&nrecvs);CHKERRQ(ierr);
3628965ea79SLois Curfman McInnes 
3638965ea79SLois Curfman McInnes   /* post receives:   */
364785e854fSJed Brown   ierr = PetscMalloc1((nrecvs+1)*(nmax+1),&rvalues);CHKERRQ(ierr);
365854ce69bSBarry Smith   ierr = PetscMalloc1(nrecvs+1,&recv_waits);CHKERRQ(ierr);
3668965ea79SLois Curfman McInnes   for (i=0; i<nrecvs; i++) {
36713f74950SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
3688965ea79SLois Curfman McInnes   }
3698965ea79SLois Curfman McInnes 
3708965ea79SLois Curfman McInnes   /* do sends:
3718965ea79SLois Curfman McInnes       1) starts[i] gives the starting index in svalues for stuff going to
3728965ea79SLois Curfman McInnes          the ith processor
3738965ea79SLois Curfman McInnes   */
374854ce69bSBarry Smith   ierr = PetscMalloc1(N+1,&svalues);CHKERRQ(ierr);
375854ce69bSBarry Smith   ierr = PetscMalloc1(nsends+1,&send_waits);CHKERRQ(ierr);
376854ce69bSBarry Smith   ierr = PetscMalloc1(size+1,&starts);CHKERRQ(ierr);
3778965ea79SLois Curfman McInnes 
3788965ea79SLois Curfman McInnes   starts[0] = 0;
37976ec1555SBarry Smith   for (i=1; i<size; i++) starts[i] = starts[i-1] + sizes[2*i-2];
3802205254eSKarl Rupp   for (i=0; i<N; i++) svalues[starts[owner[i]]++] = rows[i];
3812205254eSKarl Rupp 
3822205254eSKarl Rupp   starts[0] = 0;
38376ec1555SBarry Smith   for (i=1; i<size+1; i++) starts[i] = starts[i-1] + sizes[2*i-2];
3848965ea79SLois Curfman McInnes   count = 0;
3858965ea79SLois Curfman McInnes   for (i=0; i<size; i++) {
38676ec1555SBarry Smith     if (sizes[2*i+1]) {
38776ec1555SBarry Smith       ierr = MPI_Isend(svalues+starts[i],sizes[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
3888965ea79SLois Curfman McInnes     }
3898965ea79SLois Curfman McInnes   }
390606d414cSSatish Balay   ierr = PetscFree(starts);CHKERRQ(ierr);
3918965ea79SLois Curfman McInnes 
3928965ea79SLois Curfman McInnes   base = owners[rank];
3938965ea79SLois Curfman McInnes 
3948965ea79SLois Curfman McInnes   /*  wait on receives */
395dcca6d9dSJed Brown   ierr  = PetscMalloc2(nrecvs,&lens,nrecvs,&source);CHKERRQ(ierr);
39674ed9c26SBarry Smith   count = nrecvs;
39774ed9c26SBarry Smith   slen  = 0;
3988965ea79SLois Curfman McInnes   while (count) {
399ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
4008965ea79SLois Curfman McInnes     /* unpack receives into our local space */
40113f74950SBarry Smith     ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr);
4022205254eSKarl Rupp 
4038965ea79SLois Curfman McInnes     source[imdex] = recv_status.MPI_SOURCE;
4048965ea79SLois Curfman McInnes     lens[imdex]   = n;
4058965ea79SLois Curfman McInnes     slen += n;
4068965ea79SLois Curfman McInnes     count--;
4078965ea79SLois Curfman McInnes   }
408606d414cSSatish Balay   ierr = PetscFree(recv_waits);CHKERRQ(ierr);
4098965ea79SLois Curfman McInnes 
4108965ea79SLois Curfman McInnes   /* move the data into the send scatter */
411854ce69bSBarry Smith   ierr  = PetscMalloc1(slen+1,&lrows);CHKERRQ(ierr);
4128965ea79SLois Curfman McInnes   count = 0;
4138965ea79SLois Curfman McInnes   for (i=0; i<nrecvs; i++) {
4148965ea79SLois Curfman McInnes     values = rvalues + i*nmax;
4158965ea79SLois Curfman McInnes     for (j=0; j<lens[i]; j++) {
4168965ea79SLois Curfman McInnes       lrows[count++] = values[j] - base;
4178965ea79SLois Curfman McInnes     }
4188965ea79SLois Curfman McInnes   }
419606d414cSSatish Balay   ierr = PetscFree(rvalues);CHKERRQ(ierr);
42074ed9c26SBarry Smith   ierr = PetscFree2(lens,source);CHKERRQ(ierr);
421606d414cSSatish Balay   ierr = PetscFree(owner);CHKERRQ(ierr);
42276ec1555SBarry Smith   ierr = PetscFree(sizes);CHKERRQ(ierr);
4238965ea79SLois Curfman McInnes 
42497b48c8fSBarry Smith   /* fix right hand side if needed */
42597b48c8fSBarry Smith   if (x && b) {
42697b48c8fSBarry Smith     ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr);
42797b48c8fSBarry Smith     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
42897b48c8fSBarry Smith     for (i=0; i<slen; i++) {
42997b48c8fSBarry Smith       bb[lrows[i]] = diag*xx[lrows[i]];
43097b48c8fSBarry Smith     }
43197b48c8fSBarry Smith     ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr);
43297b48c8fSBarry Smith     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
43397b48c8fSBarry Smith   }
43497b48c8fSBarry Smith 
4358965ea79SLois Curfman McInnes   /* actually zap the local rows */
436b9679d65SBarry Smith   ierr = MatZeroRows(l->A,slen,lrows,0.0,0,0);CHKERRQ(ierr);
437e2eb51b1SBarry Smith   if (diag != 0.0) {
438b9679d65SBarry Smith     Mat_SeqDense *ll = (Mat_SeqDense*)l->A->data;
439b9679d65SBarry Smith     PetscInt     m   = ll->lda, i;
440b9679d65SBarry Smith 
441b9679d65SBarry Smith     for (i=0; i<slen; i++) {
442b9679d65SBarry Smith       ll->v[lrows[i] + m*(A->cmap->rstart + lrows[i])] = diag;
443b9679d65SBarry Smith     }
444b9679d65SBarry Smith   }
445606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
4468965ea79SLois Curfman McInnes 
4478965ea79SLois Curfman McInnes   /* wait on sends */
4488965ea79SLois Curfman McInnes   if (nsends) {
449785e854fSJed Brown     ierr = PetscMalloc1(nsends,&send_status);CHKERRQ(ierr);
450ca161407SBarry Smith     ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
451606d414cSSatish Balay     ierr = PetscFree(send_status);CHKERRQ(ierr);
4528965ea79SLois Curfman McInnes   }
453606d414cSSatish Balay   ierr = PetscFree(send_waits);CHKERRQ(ierr);
454606d414cSSatish Balay   ierr = PetscFree(svalues);CHKERRQ(ierr);
4553a40ed3dSBarry Smith   PetscFunctionReturn(0);
4568965ea79SLois Curfman McInnes }
4578965ea79SLois Curfman McInnes 
458cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec);
459cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec);
460cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec);
461cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec);
462cc2e6a90SBarry Smith 
463dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy)
4648965ea79SLois Curfman McInnes {
46539ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
466dfbe8321SBarry Smith   PetscErrorCode ierr;
467c456f294SBarry Smith 
4683a40ed3dSBarry Smith   PetscFunctionBegin;
469ca9f406cSSatish Balay   ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
470ca9f406cSSatish Balay   ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
471cc2e6a90SBarry Smith   ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy);CHKERRQ(ierr);
4723a40ed3dSBarry Smith   PetscFunctionReturn(0);
4738965ea79SLois Curfman McInnes }
4748965ea79SLois Curfman McInnes 
475dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz)
4768965ea79SLois Curfman McInnes {
47739ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
478dfbe8321SBarry Smith   PetscErrorCode ierr;
479c456f294SBarry Smith 
4803a40ed3dSBarry Smith   PetscFunctionBegin;
481ca9f406cSSatish Balay   ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
482ca9f406cSSatish Balay   ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
483cc2e6a90SBarry Smith   ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr);
4843a40ed3dSBarry Smith   PetscFunctionReturn(0);
4858965ea79SLois Curfman McInnes }
4868965ea79SLois Curfman McInnes 
487dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy)
488096963f5SLois Curfman McInnes {
489096963f5SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
490dfbe8321SBarry Smith   PetscErrorCode ierr;
49187828ca2SBarry Smith   PetscScalar    zero = 0.0;
492096963f5SLois Curfman McInnes 
4933a40ed3dSBarry Smith   PetscFunctionBegin;
4942dcb1b2aSMatthew Knepley   ierr = VecSet(yy,zero);CHKERRQ(ierr);
495cc2e6a90SBarry Smith   ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr);
496ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
497ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
4983a40ed3dSBarry Smith   PetscFunctionReturn(0);
499096963f5SLois Curfman McInnes }
500096963f5SLois Curfman McInnes 
501dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz)
502096963f5SLois Curfman McInnes {
503096963f5SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
504dfbe8321SBarry Smith   PetscErrorCode ierr;
505096963f5SLois Curfman McInnes 
5063a40ed3dSBarry Smith   PetscFunctionBegin;
5073501a2bdSLois Curfman McInnes   ierr = VecCopy(yy,zz);CHKERRQ(ierr);
508cc2e6a90SBarry Smith   ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr);
509ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
510ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
5113a40ed3dSBarry Smith   PetscFunctionReturn(0);
512096963f5SLois Curfman McInnes }
513096963f5SLois Curfman McInnes 
514dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v)
5158965ea79SLois Curfman McInnes {
51639ddd567SLois Curfman McInnes   Mat_MPIDense   *a    = (Mat_MPIDense*)A->data;
517096963f5SLois Curfman McInnes   Mat_SeqDense   *aloc = (Mat_SeqDense*)a->A->data;
518dfbe8321SBarry Smith   PetscErrorCode ierr;
519d0f46423SBarry Smith   PetscInt       len,i,n,m = A->rmap->n,radd;
52087828ca2SBarry Smith   PetscScalar    *x,zero = 0.0;
521ed3cc1f0SBarry Smith 
5223a40ed3dSBarry Smith   PetscFunctionBegin;
5232dcb1b2aSMatthew Knepley   ierr = VecSet(v,zero);CHKERRQ(ierr);
5241ebc52fbSHong Zhang   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
525096963f5SLois Curfman McInnes   ierr = VecGetSize(v,&n);CHKERRQ(ierr);
526e32f2f54SBarry Smith   if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec");
527d0f46423SBarry Smith   len  = PetscMin(a->A->rmap->n,a->A->cmap->n);
528d0f46423SBarry Smith   radd = A->rmap->rstart*m;
52944cd7ae7SLois Curfman McInnes   for (i=0; i<len; i++) {
530096963f5SLois Curfman McInnes     x[i] = aloc->v[radd + i*m + i];
531096963f5SLois Curfman McInnes   }
5321ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
5333a40ed3dSBarry Smith   PetscFunctionReturn(0);
5348965ea79SLois Curfman McInnes }
5358965ea79SLois Curfman McInnes 
536dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat)
5378965ea79SLois Curfman McInnes {
5383501a2bdSLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
539dfbe8321SBarry Smith   PetscErrorCode ierr;
540ed3cc1f0SBarry Smith 
5413a40ed3dSBarry Smith   PetscFunctionBegin;
542aa482453SBarry Smith #if defined(PETSC_USE_LOG)
543d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N);
5448965ea79SLois Curfman McInnes #endif
5458798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
5466bf464f9SBarry Smith   ierr = MatDestroy(&mdn->A);CHKERRQ(ierr);
5476bf464f9SBarry Smith   ierr = VecDestroy(&mdn->lvec);CHKERRQ(ierr);
5486bf464f9SBarry Smith   ierr = VecScatterDestroy(&mdn->Mvctx);CHKERRQ(ierr);
54901b82886SBarry Smith 
550bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
551dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
5528baccfbdSHong Zhang 
5538baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr);
554d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL);CHKERRQ(ierr);
555d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL);CHKERRQ(ierr);
556d3042a70SBarry Smith 
5578baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr);
5588baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
5598baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL);CHKERRQ(ierr);
5608baccfbdSHong Zhang #endif
561bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL);CHKERRQ(ierr);
562bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
563bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
564bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
5658baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMult_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
5668baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
5678baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
5683a40ed3dSBarry Smith   PetscFunctionReturn(0);
5698965ea79SLois Curfman McInnes }
57039ddd567SLois Curfman McInnes 
5716849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_Binary(Mat mat,PetscViewer viewer)
5728965ea79SLois Curfman McInnes {
57339ddd567SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)mat->data;
574dfbe8321SBarry Smith   PetscErrorCode    ierr;
575aa05aa95SBarry Smith   PetscViewerFormat format;
576aa05aa95SBarry Smith   int               fd;
577d0f46423SBarry Smith   PetscInt          header[4],mmax,N = mat->cmap->N,i,j,m,k;
578aa05aa95SBarry Smith   PetscMPIInt       rank,tag  = ((PetscObject)viewer)->tag,size;
579578230a0SSatish Balay   PetscScalar       *work,*v,*vv;
580aa05aa95SBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)mdn->A->data;
5817056b6fcSBarry Smith 
5823a40ed3dSBarry Smith   PetscFunctionBegin;
58339ddd567SLois Curfman McInnes   if (mdn->size == 1) {
58439ddd567SLois Curfman McInnes     ierr = MatView(mdn->A,viewer);CHKERRQ(ierr);
585aa05aa95SBarry Smith   } else {
586aa05aa95SBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
587ce94432eSBarry Smith     ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
588ce94432eSBarry Smith     ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr);
589aa05aa95SBarry Smith 
590aa05aa95SBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
591f4403165SShri Abhyankar     if (format == PETSC_VIEWER_NATIVE) {
592aa05aa95SBarry Smith 
593aa05aa95SBarry Smith       if (!rank) {
594aa05aa95SBarry Smith         /* store the matrix as a dense matrix */
5950700a824SBarry Smith         header[0] = MAT_FILE_CLASSID;
596d0f46423SBarry Smith         header[1] = mat->rmap->N;
597aa05aa95SBarry Smith         header[2] = N;
598aa05aa95SBarry Smith         header[3] = MATRIX_BINARY_FORMAT_DENSE;
599aa05aa95SBarry Smith         ierr      = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
600aa05aa95SBarry Smith 
601aa05aa95SBarry Smith         /* get largest work array needed for transposing array */
602d0f46423SBarry Smith         mmax = mat->rmap->n;
603aa05aa95SBarry Smith         for (i=1; i<size; i++) {
604d0f46423SBarry Smith           mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]);
6058965ea79SLois Curfman McInnes         }
606785e854fSJed Brown         ierr = PetscMalloc1(mmax*N,&work);CHKERRQ(ierr);
607aa05aa95SBarry Smith 
608aa05aa95SBarry Smith         /* write out local array, by rows */
609d0f46423SBarry Smith         m = mat->rmap->n;
610aa05aa95SBarry Smith         v = a->v;
611aa05aa95SBarry Smith         for (j=0; j<N; j++) {
612aa05aa95SBarry Smith           for (i=0; i<m; i++) {
613578230a0SSatish Balay             work[j + i*N] = *v++;
614aa05aa95SBarry Smith           }
615aa05aa95SBarry Smith         }
616aa05aa95SBarry Smith         ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr);
617aa05aa95SBarry Smith         /* get largest work array to receive messages from other processes, excludes process zero */
618aa05aa95SBarry Smith         mmax = 0;
619aa05aa95SBarry Smith         for (i=1; i<size; i++) {
620d0f46423SBarry Smith           mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]);
621aa05aa95SBarry Smith         }
622785e854fSJed Brown         ierr = PetscMalloc1(mmax*N,&vv);CHKERRQ(ierr);
623aa05aa95SBarry Smith         for (k = 1; k < size; k++) {
624f8009846SMatthew Knepley           v    = vv;
625d0f46423SBarry Smith           m    = mat->rmap->range[k+1] - mat->rmap->range[k];
626ce94432eSBarry Smith           ierr = MPIULong_Recv(v,m*N,MPIU_SCALAR,k,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
627aa05aa95SBarry Smith 
628aa05aa95SBarry Smith           for (j = 0; j < N; j++) {
629aa05aa95SBarry Smith             for (i = 0; i < m; i++) {
630578230a0SSatish Balay               work[j + i*N] = *v++;
631aa05aa95SBarry Smith             }
632aa05aa95SBarry Smith           }
633aa05aa95SBarry Smith           ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr);
634aa05aa95SBarry Smith         }
635aa05aa95SBarry Smith         ierr = PetscFree(work);CHKERRQ(ierr);
636578230a0SSatish Balay         ierr = PetscFree(vv);CHKERRQ(ierr);
637aa05aa95SBarry Smith       } else {
638ce94432eSBarry Smith         ierr = MPIULong_Send(a->v,mat->rmap->n*mat->cmap->N,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
639aa05aa95SBarry Smith       }
6406a9046bcSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"To store a parallel dense matrix you must first call PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE)");
641aa05aa95SBarry Smith   }
6423a40ed3dSBarry Smith   PetscFunctionReturn(0);
6438965ea79SLois Curfman McInnes }
6448965ea79SLois Curfman McInnes 
6457da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqDense(Mat,PetscViewer);
6469804daf3SBarry Smith #include <petscdraw.h>
6476849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
6488965ea79SLois Curfman McInnes {
64939ddd567SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)mat->data;
650dfbe8321SBarry Smith   PetscErrorCode    ierr;
6517da1fb6eSBarry Smith   PetscMPIInt       rank = mdn->rank;
65219fd82e9SBarry Smith   PetscViewerType   vtype;
653ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
654b0a32e0cSBarry Smith   PetscViewer       sviewer;
655f3ef73ceSBarry Smith   PetscViewerFormat format;
6568965ea79SLois Curfman McInnes 
6573a40ed3dSBarry Smith   PetscFunctionBegin;
658251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
659251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
66032077d6dSBarry Smith   if (iascii) {
661b0a32e0cSBarry Smith     ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr);
662b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
663456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
6644e220ebcSLois Curfman McInnes       MatInfo info;
665888f2ed8SSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
6661575c14dSBarry Smith       ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr);
6677b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"  [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr);
668b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
6691575c14dSBarry Smith       ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr);
6705d00a290SHong Zhang       ierr = VecScatterView(mdn->Mvctx,viewer);CHKERRQ(ierr);
6713a40ed3dSBarry Smith       PetscFunctionReturn(0);
672fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
6733a40ed3dSBarry Smith       PetscFunctionReturn(0);
6748965ea79SLois Curfman McInnes     }
675f1af5d2fSBarry Smith   } else if (isdraw) {
676b0a32e0cSBarry Smith     PetscDraw draw;
677ace3abfcSBarry Smith     PetscBool isnull;
678f1af5d2fSBarry Smith 
679b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
680b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
681f1af5d2fSBarry Smith     if (isnull) PetscFunctionReturn(0);
682f1af5d2fSBarry Smith   }
68377ed5343SBarry Smith 
6847da1fb6eSBarry Smith   {
6858965ea79SLois Curfman McInnes     /* assemble the entire matrix onto first processor. */
6868965ea79SLois Curfman McInnes     Mat         A;
687d0f46423SBarry Smith     PetscInt    M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz;
688ba8c8a56SBarry Smith     PetscInt    *cols;
689ba8c8a56SBarry Smith     PetscScalar *vals;
6908965ea79SLois Curfman McInnes 
691ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
6928965ea79SLois Curfman McInnes     if (!rank) {
693f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
6943a40ed3dSBarry Smith     } else {
695f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
6968965ea79SLois Curfman McInnes     }
6977adad957SLisandro Dalcin     /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */
698878740d9SKris Buschelman     ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr);
6990298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr);
7003bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
7018965ea79SLois Curfman McInnes 
70239ddd567SLois Curfman McInnes     /* Copy the matrix ... This isn't the most efficient means,
70339ddd567SLois Curfman McInnes        but it's quick for now */
70451022da4SBarry Smith     A->insertmode = INSERT_VALUES;
7052205254eSKarl Rupp 
7062205254eSKarl Rupp     row = mat->rmap->rstart;
7072205254eSKarl Rupp     m   = mdn->A->rmap->n;
7088965ea79SLois Curfman McInnes     for (i=0; i<m; i++) {
709ba8c8a56SBarry Smith       ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr);
710ba8c8a56SBarry Smith       ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr);
711ba8c8a56SBarry Smith       ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr);
71239ddd567SLois Curfman McInnes       row++;
7138965ea79SLois Curfman McInnes     }
7148965ea79SLois Curfman McInnes 
7156d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
7166d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
7173f08860eSBarry Smith     ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
718b9b97703SBarry Smith     if (!rank) {
7191a9d3c3cSBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
7207da1fb6eSBarry Smith       ierr = MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr);
7218965ea79SLois Curfman McInnes     }
7223f08860eSBarry Smith     ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
723b0a32e0cSBarry Smith     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
7246bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
7258965ea79SLois Curfman McInnes   }
7263a40ed3dSBarry Smith   PetscFunctionReturn(0);
7278965ea79SLois Curfman McInnes }
7288965ea79SLois Curfman McInnes 
729dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer)
7308965ea79SLois Curfman McInnes {
731dfbe8321SBarry Smith   PetscErrorCode ierr;
732ace3abfcSBarry Smith   PetscBool      iascii,isbinary,isdraw,issocket;
7338965ea79SLois Curfman McInnes 
734433994e6SBarry Smith   PetscFunctionBegin;
735251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
736251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
737251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
738251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
7390f5bd95cSBarry Smith 
74032077d6dSBarry Smith   if (iascii || issocket || isdraw) {
741f1af5d2fSBarry Smith     ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
7420f5bd95cSBarry Smith   } else if (isbinary) {
7433a40ed3dSBarry Smith     ierr = MatView_MPIDense_Binary(mat,viewer);CHKERRQ(ierr);
74411aeaf0aSBarry Smith   }
7453a40ed3dSBarry Smith   PetscFunctionReturn(0);
7468965ea79SLois Curfman McInnes }
7478965ea79SLois Curfman McInnes 
748dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info)
7498965ea79SLois Curfman McInnes {
7503501a2bdSLois Curfman McInnes   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
7513501a2bdSLois Curfman McInnes   Mat            mdn  = mat->A;
752dfbe8321SBarry Smith   PetscErrorCode ierr;
753329f5518SBarry Smith   PetscReal      isend[5],irecv[5];
7548965ea79SLois Curfman McInnes 
7553a40ed3dSBarry Smith   PetscFunctionBegin;
7564e220ebcSLois Curfman McInnes   info->block_size = 1.0;
7572205254eSKarl Rupp 
7584e220ebcSLois Curfman McInnes   ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr);
7592205254eSKarl Rupp 
7604e220ebcSLois Curfman McInnes   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
7614e220ebcSLois Curfman McInnes   isend[3] = info->memory;  isend[4] = info->mallocs;
7628965ea79SLois Curfman McInnes   if (flag == MAT_LOCAL) {
7634e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
7644e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
7654e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
7664e220ebcSLois Curfman McInnes     info->memory       = isend[3];
7674e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
7688965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
769b2566f29SBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
7702205254eSKarl Rupp 
7714e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
7724e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
7734e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
7744e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
7754e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
7768965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
777b2566f29SBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
7782205254eSKarl Rupp 
7794e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
7804e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
7814e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
7824e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
7834e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
7848965ea79SLois Curfman McInnes   }
7854e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
7864e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
7874e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
7883a40ed3dSBarry Smith   PetscFunctionReturn(0);
7898965ea79SLois Curfman McInnes }
7908965ea79SLois Curfman McInnes 
791ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg)
7928965ea79SLois Curfman McInnes {
79339ddd567SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
794dfbe8321SBarry Smith   PetscErrorCode ierr;
7958965ea79SLois Curfman McInnes 
7963a40ed3dSBarry Smith   PetscFunctionBegin;
79712c028f9SKris Buschelman   switch (op) {
798512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
79912c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
80012c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
80143674050SBarry Smith     MatCheckPreallocated(A,1);
8024e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
80312c028f9SKris Buschelman     break;
80412c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
80543674050SBarry Smith     MatCheckPreallocated(A,1);
8064e0d8c25SBarry Smith     a->roworiented = flg;
8074e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
80812c028f9SKris Buschelman     break;
8094e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
81013fa8e87SLisandro Dalcin   case MAT_KEEP_NONZERO_PATTERN:
81112c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
812290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
81312c028f9SKris Buschelman     break;
81412c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
8154e0d8c25SBarry Smith     a->donotstash = flg;
81612c028f9SKris Buschelman     break;
81777e54ba9SKris Buschelman   case MAT_SYMMETRIC:
81877e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
8199a4540c5SBarry Smith   case MAT_HERMITIAN:
8209a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
821600fe468SBarry Smith   case MAT_IGNORE_LOWER_TRIANGULAR:
822290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
82377e54ba9SKris Buschelman     break;
82412c028f9SKris Buschelman   default:
825e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]);
8263a40ed3dSBarry Smith   }
8273a40ed3dSBarry Smith   PetscFunctionReturn(0);
8288965ea79SLois Curfman McInnes }
8298965ea79SLois Curfman McInnes 
8308965ea79SLois Curfman McInnes 
831dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr)
8325b2fa520SLois Curfman McInnes {
8335b2fa520SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)A->data;
8345b2fa520SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)mdn->A->data;
835*bca11509SBarry Smith   const PetscScalar *l,*r;
836*bca11509SBarry Smith   PetscScalar       x,*v;
837dfbe8321SBarry Smith   PetscErrorCode    ierr;
838d0f46423SBarry Smith   PetscInt          i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n;
8395b2fa520SLois Curfman McInnes 
8405b2fa520SLois Curfman McInnes   PetscFunctionBegin;
84172d926a5SLois Curfman McInnes   ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr);
8425b2fa520SLois Curfman McInnes   if (ll) {
84372d926a5SLois Curfman McInnes     ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr);
844e32f2f54SBarry Smith     if (s2a != s2) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %d != %d.", s2a, s2);
845*bca11509SBarry Smith     ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr);
8465b2fa520SLois Curfman McInnes     for (i=0; i<m; i++) {
8475b2fa520SLois Curfman McInnes       x = l[i];
8485b2fa520SLois Curfman McInnes       v = mat->v + i;
8495b2fa520SLois Curfman McInnes       for (j=0; j<n; j++) { (*v) *= x; v+= m;}
8505b2fa520SLois Curfman McInnes     }
851*bca11509SBarry Smith     ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr);
852efee365bSSatish Balay     ierr = PetscLogFlops(n*m);CHKERRQ(ierr);
8535b2fa520SLois Curfman McInnes   }
8545b2fa520SLois Curfman McInnes   if (rr) {
855175be7b4SMatthew Knepley     ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr);
856e32f2f54SBarry Smith     if (s3a != s3) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3);
857ca9f406cSSatish Balay     ierr = VecScatterBegin(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
858ca9f406cSSatish Balay     ierr = VecScatterEnd(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
859*bca11509SBarry Smith     ierr = VecGetArrayRead(mdn->lvec,&r);CHKERRQ(ierr);
8605b2fa520SLois Curfman McInnes     for (i=0; i<n; i++) {
8615b2fa520SLois Curfman McInnes       x = r[i];
8625b2fa520SLois Curfman McInnes       v = mat->v + i*m;
8632205254eSKarl Rupp       for (j=0; j<m; j++) (*v++) *= x;
8645b2fa520SLois Curfman McInnes     }
865*bca11509SBarry Smith     ierr = VecRestoreArrayRead(mdn->lvec,&r);CHKERRQ(ierr);
866efee365bSSatish Balay     ierr = PetscLogFlops(n*m);CHKERRQ(ierr);
8675b2fa520SLois Curfman McInnes   }
8685b2fa520SLois Curfman McInnes   PetscFunctionReturn(0);
8695b2fa520SLois Curfman McInnes }
8705b2fa520SLois Curfman McInnes 
871dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm)
872096963f5SLois Curfman McInnes {
8733501a2bdSLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)A->data;
8743501a2bdSLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)mdn->A->data;
875dfbe8321SBarry Smith   PetscErrorCode ierr;
87613f74950SBarry Smith   PetscInt       i,j;
877329f5518SBarry Smith   PetscReal      sum = 0.0;
87887828ca2SBarry Smith   PetscScalar    *v  = mat->v;
8793501a2bdSLois Curfman McInnes 
8803a40ed3dSBarry Smith   PetscFunctionBegin;
8813501a2bdSLois Curfman McInnes   if (mdn->size == 1) {
882064f8208SBarry Smith     ierr =  MatNorm(mdn->A,type,nrm);CHKERRQ(ierr);
8833501a2bdSLois Curfman McInnes   } else {
8843501a2bdSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
885d0f46423SBarry Smith       for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) {
886329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
8873501a2bdSLois Curfman McInnes       }
888b2566f29SBarry Smith       ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
8898f1a2a5eSBarry Smith       *nrm = PetscSqrtReal(*nrm);
890dc0b31edSSatish Balay       ierr = PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr);
8913a40ed3dSBarry Smith     } else if (type == NORM_1) {
892329f5518SBarry Smith       PetscReal *tmp,*tmp2;
893dcca6d9dSJed Brown       ierr = PetscMalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2);CHKERRQ(ierr);
89474ed9c26SBarry Smith       ierr = PetscMemzero(tmp,A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
89574ed9c26SBarry Smith       ierr = PetscMemzero(tmp2,A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
896064f8208SBarry Smith       *nrm = 0.0;
8973501a2bdSLois Curfman McInnes       v    = mat->v;
898d0f46423SBarry Smith       for (j=0; j<mdn->A->cmap->n; j++) {
899d0f46423SBarry Smith         for (i=0; i<mdn->A->rmap->n; i++) {
90067e560aaSBarry Smith           tmp[j] += PetscAbsScalar(*v);  v++;
9013501a2bdSLois Curfman McInnes         }
9023501a2bdSLois Curfman McInnes       }
903b2566f29SBarry Smith       ierr = MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
904d0f46423SBarry Smith       for (j=0; j<A->cmap->N; j++) {
905064f8208SBarry Smith         if (tmp2[j] > *nrm) *nrm = tmp2[j];
9063501a2bdSLois Curfman McInnes       }
9078627564fSBarry Smith       ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr);
908d0f46423SBarry Smith       ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr);
9093a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
910329f5518SBarry Smith       PetscReal ntemp;
9113501a2bdSLois Curfman McInnes       ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr);
912b2566f29SBarry Smith       ierr = MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
913ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm");
9143501a2bdSLois Curfman McInnes   }
9153a40ed3dSBarry Smith   PetscFunctionReturn(0);
9163501a2bdSLois Curfman McInnes }
9173501a2bdSLois Curfman McInnes 
918fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout)
9193501a2bdSLois Curfman McInnes {
9203501a2bdSLois Curfman McInnes   Mat_MPIDense   *a    = (Mat_MPIDense*)A->data;
9213501a2bdSLois Curfman McInnes   Mat_SeqDense   *Aloc = (Mat_SeqDense*)a->A->data;
9223501a2bdSLois Curfman McInnes   Mat            B;
923d0f46423SBarry Smith   PetscInt       M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart;
9246849ba73SBarry Smith   PetscErrorCode ierr;
92513f74950SBarry Smith   PetscInt       j,i;
92687828ca2SBarry Smith   PetscScalar    *v;
9273501a2bdSLois Curfman McInnes 
9283a40ed3dSBarry Smith   PetscFunctionBegin;
929cf37664fSBarry Smith   if (reuse == MAT_INPLACE_MATRIX  && M != N) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Supports square matrix only in-place");
930cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) {
931ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
932d0f46423SBarry Smith     ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr);
9337adad957SLisandro Dalcin     ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr);
9340298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(B,NULL);CHKERRQ(ierr);
935fc4dec0aSBarry Smith   } else {
936fc4dec0aSBarry Smith     B = *matout;
937fc4dec0aSBarry Smith   }
9383501a2bdSLois Curfman McInnes 
939d0f46423SBarry Smith   m    = a->A->rmap->n; n = a->A->cmap->n; v = Aloc->v;
940785e854fSJed Brown   ierr = PetscMalloc1(m,&rwork);CHKERRQ(ierr);
9413501a2bdSLois Curfman McInnes   for (i=0; i<m; i++) rwork[i] = rstart + i;
9421acff37aSSatish Balay   for (j=0; j<n; j++) {
9433501a2bdSLois Curfman McInnes     ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr);
9443501a2bdSLois Curfman McInnes     v   += m;
9453501a2bdSLois Curfman McInnes   }
946606d414cSSatish Balay   ierr = PetscFree(rwork);CHKERRQ(ierr);
9476d4a8577SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
9486d4a8577SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
949cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) {
9503501a2bdSLois Curfman McInnes     *matout = B;
9513501a2bdSLois Curfman McInnes   } else {
95228be2f97SBarry Smith     ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr);
9533501a2bdSLois Curfman McInnes   }
9543a40ed3dSBarry Smith   PetscFunctionReturn(0);
955096963f5SLois Curfman McInnes }
956096963f5SLois Curfman McInnes 
95744cd7ae7SLois Curfman McInnes 
9586849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*);
959d84338a6SBarry Smith extern PetscErrorCode MatScale_MPIDense(Mat,PetscScalar);
9608965ea79SLois Curfman McInnes 
9614994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A)
962273d9f13SBarry Smith {
963dfbe8321SBarry Smith   PetscErrorCode ierr;
964273d9f13SBarry Smith 
965273d9f13SBarry Smith   PetscFunctionBegin;
966273d9f13SBarry Smith   ierr =  MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr);
967273d9f13SBarry Smith   PetscFunctionReturn(0);
968273d9f13SBarry Smith }
969273d9f13SBarry Smith 
970488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str)
971488007eeSBarry Smith {
972488007eeSBarry Smith   PetscErrorCode ierr;
973488007eeSBarry Smith   Mat_MPIDense   *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data;
974488007eeSBarry Smith 
975488007eeSBarry Smith   PetscFunctionBegin;
976488007eeSBarry Smith   ierr = MatAXPY(A->A,alpha,B->A,str);CHKERRQ(ierr);
977a3fa217bSJose E. Roman   ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
978488007eeSBarry Smith   PetscFunctionReturn(0);
979488007eeSBarry Smith }
980488007eeSBarry Smith 
9817087cfbeSBarry Smith PetscErrorCode  MatConjugate_MPIDense(Mat mat)
982ba337c44SJed Brown {
983ba337c44SJed Brown   Mat_MPIDense   *a = (Mat_MPIDense*)mat->data;
984ba337c44SJed Brown   PetscErrorCode ierr;
985ba337c44SJed Brown 
986ba337c44SJed Brown   PetscFunctionBegin;
987ba337c44SJed Brown   ierr = MatConjugate(a->A);CHKERRQ(ierr);
988ba337c44SJed Brown   PetscFunctionReturn(0);
989ba337c44SJed Brown }
990ba337c44SJed Brown 
991ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A)
992ba337c44SJed Brown {
993ba337c44SJed Brown   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
994ba337c44SJed Brown   PetscErrorCode ierr;
995ba337c44SJed Brown 
996ba337c44SJed Brown   PetscFunctionBegin;
997ba337c44SJed Brown   ierr = MatRealPart(a->A);CHKERRQ(ierr);
998ba337c44SJed Brown   PetscFunctionReturn(0);
999ba337c44SJed Brown }
1000ba337c44SJed Brown 
1001ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A)
1002ba337c44SJed Brown {
1003ba337c44SJed Brown   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
1004ba337c44SJed Brown   PetscErrorCode ierr;
1005ba337c44SJed Brown 
1006ba337c44SJed Brown   PetscFunctionBegin;
1007ba337c44SJed Brown   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
1008ba337c44SJed Brown   PetscFunctionReturn(0);
1009ba337c44SJed Brown }
1010ba337c44SJed Brown 
10110716a85fSBarry Smith extern PetscErrorCode MatGetColumnNorms_SeqDense(Mat,NormType,PetscReal*);
10120716a85fSBarry Smith PetscErrorCode MatGetColumnNorms_MPIDense(Mat A,NormType type,PetscReal *norms)
10130716a85fSBarry Smith {
10140716a85fSBarry Smith   PetscErrorCode ierr;
10150716a85fSBarry Smith   PetscInt       i,n;
10160716a85fSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*) A->data;
10170716a85fSBarry Smith   PetscReal      *work;
10180716a85fSBarry Smith 
10190716a85fSBarry Smith   PetscFunctionBegin;
10200298fd71SBarry Smith   ierr = MatGetSize(A,NULL,&n);CHKERRQ(ierr);
1021785e854fSJed Brown   ierr = PetscMalloc1(n,&work);CHKERRQ(ierr);
10220716a85fSBarry Smith   ierr = MatGetColumnNorms_SeqDense(a->A,type,work);CHKERRQ(ierr);
10230716a85fSBarry Smith   if (type == NORM_2) {
10240716a85fSBarry Smith     for (i=0; i<n; i++) work[i] *= work[i];
10250716a85fSBarry Smith   }
10260716a85fSBarry Smith   if (type == NORM_INFINITY) {
1027b2566f29SBarry Smith     ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_MAX,A->hdr.comm);CHKERRQ(ierr);
10280716a85fSBarry Smith   } else {
1029b2566f29SBarry Smith     ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_SUM,A->hdr.comm);CHKERRQ(ierr);
10300716a85fSBarry Smith   }
10310716a85fSBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
10320716a85fSBarry Smith   if (type == NORM_2) {
10338f1a2a5eSBarry Smith     for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]);
10340716a85fSBarry Smith   }
10350716a85fSBarry Smith   PetscFunctionReturn(0);
10360716a85fSBarry Smith }
10370716a85fSBarry Smith 
103873a71a0fSBarry Smith static PetscErrorCode  MatSetRandom_MPIDense(Mat x,PetscRandom rctx)
103973a71a0fSBarry Smith {
104073a71a0fSBarry Smith   Mat_MPIDense   *d = (Mat_MPIDense*)x->data;
104173a71a0fSBarry Smith   PetscErrorCode ierr;
104273a71a0fSBarry Smith   PetscScalar    *a;
104373a71a0fSBarry Smith   PetscInt       m,n,i;
104473a71a0fSBarry Smith 
104573a71a0fSBarry Smith   PetscFunctionBegin;
104673a71a0fSBarry Smith   ierr = MatGetSize(d->A,&m,&n);CHKERRQ(ierr);
10478c778c55SBarry Smith   ierr = MatDenseGetArray(d->A,&a);CHKERRQ(ierr);
104873a71a0fSBarry Smith   for (i=0; i<m*n; i++) {
104973a71a0fSBarry Smith     ierr = PetscRandomGetValue(rctx,a+i);CHKERRQ(ierr);
105073a71a0fSBarry Smith   }
10518c778c55SBarry Smith   ierr = MatDenseRestoreArray(d->A,&a);CHKERRQ(ierr);
105273a71a0fSBarry Smith   PetscFunctionReturn(0);
105373a71a0fSBarry Smith }
105473a71a0fSBarry Smith 
1055fd4e9aacSBarry Smith extern PetscErrorCode MatMatMultNumeric_MPIDense(Mat A,Mat,Mat);
1056fd4e9aacSBarry Smith 
10573b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool  *missing,PetscInt *d)
10583b49f96aSBarry Smith {
10593b49f96aSBarry Smith   PetscFunctionBegin;
10603b49f96aSBarry Smith   *missing = PETSC_FALSE;
10613b49f96aSBarry Smith   PetscFunctionReturn(0);
10623b49f96aSBarry Smith }
10633b49f96aSBarry Smith 
10648965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/
106509dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense,
106609dc0095SBarry Smith                                         MatGetRow_MPIDense,
106709dc0095SBarry Smith                                         MatRestoreRow_MPIDense,
106809dc0095SBarry Smith                                         MatMult_MPIDense,
106997304618SKris Buschelman                                 /*  4*/ MatMultAdd_MPIDense,
10707c922b88SBarry Smith                                         MatMultTranspose_MPIDense,
10717c922b88SBarry Smith                                         MatMultTransposeAdd_MPIDense,
10728965ea79SLois Curfman McInnes                                         0,
107309dc0095SBarry Smith                                         0,
107409dc0095SBarry Smith                                         0,
107597304618SKris Buschelman                                 /* 10*/ 0,
107609dc0095SBarry Smith                                         0,
107709dc0095SBarry Smith                                         0,
107809dc0095SBarry Smith                                         0,
107909dc0095SBarry Smith                                         MatTranspose_MPIDense,
108097304618SKris Buschelman                                 /* 15*/ MatGetInfo_MPIDense,
10816e4ee0c6SHong Zhang                                         MatEqual_MPIDense,
108209dc0095SBarry Smith                                         MatGetDiagonal_MPIDense,
10835b2fa520SLois Curfman McInnes                                         MatDiagonalScale_MPIDense,
108409dc0095SBarry Smith                                         MatNorm_MPIDense,
108597304618SKris Buschelman                                 /* 20*/ MatAssemblyBegin_MPIDense,
108609dc0095SBarry Smith                                         MatAssemblyEnd_MPIDense,
108709dc0095SBarry Smith                                         MatSetOption_MPIDense,
108809dc0095SBarry Smith                                         MatZeroEntries_MPIDense,
1089d519adbfSMatthew Knepley                                 /* 24*/ MatZeroRows_MPIDense,
1090919b68f7SBarry Smith                                         0,
109101b82886SBarry Smith                                         0,
109201b82886SBarry Smith                                         0,
109301b82886SBarry Smith                                         0,
10944994cf47SJed Brown                                 /* 29*/ MatSetUp_MPIDense,
1095273d9f13SBarry Smith                                         0,
109609dc0095SBarry Smith                                         0,
1097c56a70eeSBarry Smith                                         MatGetDiagonalBlock_MPIDense,
10988c778c55SBarry Smith                                         0,
1099d519adbfSMatthew Knepley                                 /* 34*/ MatDuplicate_MPIDense,
110009dc0095SBarry Smith                                         0,
110109dc0095SBarry Smith                                         0,
110209dc0095SBarry Smith                                         0,
110309dc0095SBarry Smith                                         0,
1104d519adbfSMatthew Knepley                                 /* 39*/ MatAXPY_MPIDense,
11057dae84e0SHong Zhang                                         MatCreateSubMatrices_MPIDense,
110609dc0095SBarry Smith                                         0,
110709dc0095SBarry Smith                                         MatGetValues_MPIDense,
110809dc0095SBarry Smith                                         0,
1109d519adbfSMatthew Knepley                                 /* 44*/ 0,
111009dc0095SBarry Smith                                         MatScale_MPIDense,
11117d68702bSBarry Smith                                         MatShift_Basic,
111209dc0095SBarry Smith                                         0,
111309dc0095SBarry Smith                                         0,
111473a71a0fSBarry Smith                                 /* 49*/ MatSetRandom_MPIDense,
111509dc0095SBarry Smith                                         0,
111609dc0095SBarry Smith                                         0,
111709dc0095SBarry Smith                                         0,
111809dc0095SBarry Smith                                         0,
1119d519adbfSMatthew Knepley                                 /* 54*/ 0,
112009dc0095SBarry Smith                                         0,
112109dc0095SBarry Smith                                         0,
112209dc0095SBarry Smith                                         0,
112309dc0095SBarry Smith                                         0,
11247dae84e0SHong Zhang                                 /* 59*/ MatCreateSubMatrix_MPIDense,
1125b9b97703SBarry Smith                                         MatDestroy_MPIDense,
1126b9b97703SBarry Smith                                         MatView_MPIDense,
1127357abbc8SBarry Smith                                         0,
112897304618SKris Buschelman                                         0,
1129d519adbfSMatthew Knepley                                 /* 64*/ 0,
113097304618SKris Buschelman                                         0,
113197304618SKris Buschelman                                         0,
113297304618SKris Buschelman                                         0,
113397304618SKris Buschelman                                         0,
1134d519adbfSMatthew Knepley                                 /* 69*/ 0,
113597304618SKris Buschelman                                         0,
113697304618SKris Buschelman                                         0,
113797304618SKris Buschelman                                         0,
113897304618SKris Buschelman                                         0,
1139d519adbfSMatthew Knepley                                 /* 74*/ 0,
114097304618SKris Buschelman                                         0,
114197304618SKris Buschelman                                         0,
114297304618SKris Buschelman                                         0,
114397304618SKris Buschelman                                         0,
1144d519adbfSMatthew Knepley                                 /* 79*/ 0,
114597304618SKris Buschelman                                         0,
114697304618SKris Buschelman                                         0,
114797304618SKris Buschelman                                         0,
11485bba2384SShri Abhyankar                                 /* 83*/ MatLoad_MPIDense,
1149865e5f61SKris Buschelman                                         0,
1150865e5f61SKris Buschelman                                         0,
1151865e5f61SKris Buschelman                                         0,
1152865e5f61SKris Buschelman                                         0,
1153865e5f61SKris Buschelman                                         0,
11549775878aSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
1155320f2790SHong Zhang                                 /* 89*/ MatMatMult_MPIDense_MPIDense,
1156320f2790SHong Zhang                                         MatMatMultSymbolic_MPIDense_MPIDense,
11579775878aSHong Zhang #else
11589775878aSHong Zhang                                 /* 89*/ 0,
1159865e5f61SKris Buschelman                                         0,
11609775878aSHong Zhang #endif
1161fd4e9aacSBarry Smith                                         MatMatMultNumeric_MPIDense,
11622fbe02b9SBarry Smith                                         0,
1163ba337c44SJed Brown                                         0,
1164d519adbfSMatthew Knepley                                 /* 94*/ 0,
1165865e5f61SKris Buschelman                                         0,
1166865e5f61SKris Buschelman                                         0,
1167ba337c44SJed Brown                                         0,
1168ba337c44SJed Brown                                         0,
1169ba337c44SJed Brown                                 /* 99*/ 0,
1170ba337c44SJed Brown                                         0,
1171ba337c44SJed Brown                                         0,
1172ba337c44SJed Brown                                         MatConjugate_MPIDense,
1173ba337c44SJed Brown                                         0,
1174ba337c44SJed Brown                                 /*104*/ 0,
1175ba337c44SJed Brown                                         MatRealPart_MPIDense,
1176ba337c44SJed Brown                                         MatImaginaryPart_MPIDense,
117786d161a7SShri Abhyankar                                         0,
117886d161a7SShri Abhyankar                                         0,
117986d161a7SShri Abhyankar                                 /*109*/ 0,
118086d161a7SShri Abhyankar                                         0,
118186d161a7SShri Abhyankar                                         0,
118286d161a7SShri Abhyankar                                         0,
11833b49f96aSBarry Smith                                         MatMissingDiagonal_MPIDense,
118486d161a7SShri Abhyankar                                 /*114*/ 0,
118586d161a7SShri Abhyankar                                         0,
118686d161a7SShri Abhyankar                                         0,
118786d161a7SShri Abhyankar                                         0,
118886d161a7SShri Abhyankar                                         0,
118986d161a7SShri Abhyankar                                 /*119*/ 0,
119086d161a7SShri Abhyankar                                         0,
119186d161a7SShri Abhyankar                                         0,
11920716a85fSBarry Smith                                         0,
11930716a85fSBarry Smith                                         0,
11940716a85fSBarry Smith                                 /*124*/ 0,
11953964eb88SJed Brown                                         MatGetColumnNorms_MPIDense,
11963964eb88SJed Brown                                         0,
11973964eb88SJed Brown                                         0,
11983964eb88SJed Brown                                         0,
11993964eb88SJed Brown                                 /*129*/ 0,
1200cb20be35SHong Zhang                                         MatTransposeMatMult_MPIDense_MPIDense,
1201cb20be35SHong Zhang                                         MatTransposeMatMultSymbolic_MPIDense_MPIDense,
1202cb20be35SHong Zhang                                         MatTransposeMatMultNumeric_MPIDense_MPIDense,
12033964eb88SJed Brown                                         0,
12043964eb88SJed Brown                                 /*134*/ 0,
12053964eb88SJed Brown                                         0,
12063964eb88SJed Brown                                         0,
12073964eb88SJed Brown                                         0,
12083964eb88SJed Brown                                         0,
12093964eb88SJed Brown                                 /*139*/ 0,
1210f9426fe0SMark Adams                                         0,
12113964eb88SJed Brown                                         0
1212ba337c44SJed Brown };
12138965ea79SLois Curfman McInnes 
12147087cfbeSBarry Smith PetscErrorCode  MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data)
1215a23d5eceSKris Buschelman {
1216a23d5eceSKris Buschelman   Mat_MPIDense   *a;
1217dfbe8321SBarry Smith   PetscErrorCode ierr;
1218a23d5eceSKris Buschelman 
1219a23d5eceSKris Buschelman   PetscFunctionBegin;
1220a23d5eceSKris Buschelman   mat->preallocated = PETSC_TRUE;
1221a23d5eceSKris Buschelman   /* Note:  For now, when data is specified above, this assumes the user correctly
1222a23d5eceSKris Buschelman    allocates the local dense storage space.  We should add error checking. */
1223a23d5eceSKris Buschelman 
1224a23d5eceSKris Buschelman   a       = (Mat_MPIDense*)mat->data;
122534ef9618SShri Abhyankar   ierr    = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr);
122634ef9618SShri Abhyankar   ierr    = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr);
122734ef9618SShri Abhyankar   a->nvec = mat->cmap->n;
122834ef9618SShri Abhyankar 
1229f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr);
1230d0f46423SBarry Smith   ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr);
12315c5985e7SKris Buschelman   ierr = MatSetType(a->A,MATSEQDENSE);CHKERRQ(ierr);
12325c5985e7SKris Buschelman   ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr);
12333bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
1234a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1235a23d5eceSKris Buschelman }
1236a23d5eceSKris Buschelman 
123765b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
1238cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat)
12398baccfbdSHong Zhang {
12408ea901baSHong Zhang   Mat            mat_elemental;
12418ea901baSHong Zhang   PetscErrorCode ierr;
124232d7a744SHong Zhang   PetscScalar    *v;
124332d7a744SHong Zhang   PetscInt       m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols;
12448ea901baSHong Zhang 
12458baccfbdSHong Zhang   PetscFunctionBegin;
1246378336b6SHong Zhang   if (reuse == MAT_REUSE_MATRIX) {
1247378336b6SHong Zhang     mat_elemental = *newmat;
1248378336b6SHong Zhang     ierr = MatZeroEntries(*newmat);CHKERRQ(ierr);
1249378336b6SHong Zhang   } else {
1250378336b6SHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr);
1251378336b6SHong Zhang     ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
1252378336b6SHong Zhang     ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr);
1253378336b6SHong Zhang     ierr = MatSetUp(mat_elemental);CHKERRQ(ierr);
125432d7a744SHong Zhang     ierr = MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
1255378336b6SHong Zhang   }
1256378336b6SHong Zhang 
125732d7a744SHong Zhang   ierr = PetscMalloc2(m,&rows,N,&cols);CHKERRQ(ierr);
125832d7a744SHong Zhang   for (i=0; i<N; i++) cols[i] = i;
125932d7a744SHong Zhang   for (i=0; i<m; i++) rows[i] = rstart + i;
12608ea901baSHong Zhang 
12618ea901baSHong Zhang   /* PETSc-Elemental interaface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */
126232d7a744SHong Zhang   ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
126332d7a744SHong Zhang   ierr = MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES);CHKERRQ(ierr);
12648ea901baSHong Zhang   ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
12658ea901baSHong Zhang   ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
126632d7a744SHong Zhang   ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
126732d7a744SHong Zhang   ierr = PetscFree2(rows,cols);CHKERRQ(ierr);
12688ea901baSHong Zhang 
1269511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
127028be2f97SBarry Smith     ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr);
12718ea901baSHong Zhang   } else {
12728ea901baSHong Zhang     *newmat = mat_elemental;
12738ea901baSHong Zhang   }
12748baccfbdSHong Zhang   PetscFunctionReturn(0);
12758baccfbdSHong Zhang }
127665b80a83SHong Zhang #endif
12778baccfbdSHong Zhang 
12788cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat)
1279273d9f13SBarry Smith {
1280273d9f13SBarry Smith   Mat_MPIDense   *a;
1281dfbe8321SBarry Smith   PetscErrorCode ierr;
1282273d9f13SBarry Smith 
1283273d9f13SBarry Smith   PetscFunctionBegin;
1284b00a9115SJed Brown   ierr      = PetscNewLog(mat,&a);CHKERRQ(ierr);
1285b0a32e0cSBarry Smith   mat->data = (void*)a;
1286273d9f13SBarry Smith   ierr      = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1287273d9f13SBarry Smith 
1288273d9f13SBarry Smith   mat->insertmode = NOT_SET_VALUES;
1289ce94432eSBarry Smith   ierr            = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&a->rank);CHKERRQ(ierr);
1290ce94432eSBarry Smith   ierr            = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&a->size);CHKERRQ(ierr);
1291273d9f13SBarry Smith 
1292273d9f13SBarry Smith   /* build cache for off array entries formed */
1293273d9f13SBarry Smith   a->donotstash = PETSC_FALSE;
12942205254eSKarl Rupp 
1295ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash);CHKERRQ(ierr);
1296273d9f13SBarry Smith 
1297273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
1298273d9f13SBarry Smith   a->lvec        = 0;
1299273d9f13SBarry Smith   a->Mvctx       = 0;
1300273d9f13SBarry Smith   a->roworiented = PETSC_TRUE;
1301273d9f13SBarry Smith 
1302bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense);CHKERRQ(ierr);
1303d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",MatDensePlaceArray_MPIDense);CHKERRQ(ierr);
1304d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",MatDenseResetArray_MPIDense);CHKERRQ(ierr);
1305bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense);CHKERRQ(ierr);
13068baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
13078baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental);CHKERRQ(ierr);
13088baccfbdSHong Zhang #endif
1309bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr);
1310bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",MatMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr);
1311bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr);
1312bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr);
13138949adfdSHong Zhang 
13148949adfdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMult_mpiaij_mpidense_C",MatTransposeMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr);
13158949adfdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",MatTransposeMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr);
13168949adfdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",MatTransposeMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr);
131738aed534SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr);
1318273d9f13SBarry Smith   PetscFunctionReturn(0);
1319273d9f13SBarry Smith }
1320273d9f13SBarry Smith 
1321209238afSKris Buschelman /*MC
1322002d173eSKris Buschelman    MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices.
1323209238afSKris Buschelman 
1324209238afSKris Buschelman    This matrix type is identical to MATSEQDENSE when constructed with a single process communicator,
1325209238afSKris Buschelman    and MATMPIDENSE otherwise.
1326209238afSKris Buschelman 
1327209238afSKris Buschelman    Options Database Keys:
1328209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions()
1329209238afSKris Buschelman 
1330209238afSKris Buschelman   Level: beginner
1331209238afSKris Buschelman 
133201b82886SBarry Smith 
1333209238afSKris Buschelman .seealso: MatCreateMPIDense,MATSEQDENSE,MATMPIDENSE
1334209238afSKris Buschelman M*/
1335209238afSKris Buschelman 
1336273d9f13SBarry Smith /*@C
1337273d9f13SBarry Smith    MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries
1338273d9f13SBarry Smith 
1339273d9f13SBarry Smith    Not collective
1340273d9f13SBarry Smith 
1341273d9f13SBarry Smith    Input Parameters:
13421c4f3114SJed Brown .  B - the matrix
13430298fd71SBarry Smith -  data - optional location of matrix data.  Set data=NULL for PETSc
1344273d9f13SBarry Smith    to control all matrix memory allocation.
1345273d9f13SBarry Smith 
1346273d9f13SBarry Smith    Notes:
1347273d9f13SBarry Smith    The dense format is fully compatible with standard Fortran 77
1348273d9f13SBarry Smith    storage by columns.
1349273d9f13SBarry Smith 
1350273d9f13SBarry Smith    The data input variable is intended primarily for Fortran programmers
1351273d9f13SBarry Smith    who wish to allocate their own matrix memory space.  Most users should
13520298fd71SBarry Smith    set data=NULL.
1353273d9f13SBarry Smith 
1354273d9f13SBarry Smith    Level: intermediate
1355273d9f13SBarry Smith 
1356273d9f13SBarry Smith .keywords: matrix,dense, parallel
1357273d9f13SBarry Smith 
1358273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues()
1359273d9f13SBarry Smith @*/
13601c4f3114SJed Brown PetscErrorCode  MatMPIDenseSetPreallocation(Mat B,PetscScalar *data)
1361273d9f13SBarry Smith {
13624ac538c5SBarry Smith   PetscErrorCode ierr;
1363273d9f13SBarry Smith 
1364273d9f13SBarry Smith   PetscFunctionBegin;
13651c4f3114SJed Brown   ierr = PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data));CHKERRQ(ierr);
1366273d9f13SBarry Smith   PetscFunctionReturn(0);
1367273d9f13SBarry Smith }
1368273d9f13SBarry Smith 
1369d3042a70SBarry Smith /*@
1370d3042a70SBarry Smith    MatDensePlaceArray - Allows one to replace the array in a dense array with an
1371d3042a70SBarry Smith    array provided by the user. This is useful to avoid copying an array
1372d3042a70SBarry Smith    into a matrix
1373d3042a70SBarry Smith 
1374d3042a70SBarry Smith    Not Collective
1375d3042a70SBarry Smith 
1376d3042a70SBarry Smith    Input Parameters:
1377d3042a70SBarry Smith +  mat - the matrix
1378d3042a70SBarry Smith -  array - the array in column major order
1379d3042a70SBarry Smith 
1380d3042a70SBarry Smith    Notes:
1381d3042a70SBarry Smith    You can return to the original array with a call to MatDenseResetArray(). The user is responsible for freeing this array; it will not be
1382d3042a70SBarry Smith    freed when the matrix is destroyed.
1383d3042a70SBarry Smith 
1384d3042a70SBarry Smith    Level: developer
1385d3042a70SBarry Smith 
1386d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDenseResetArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray()
1387d3042a70SBarry Smith 
1388d3042a70SBarry Smith @*/
1389d3042a70SBarry Smith PetscErrorCode  MatDensePlaceArray(Mat mat,const PetscScalar array[])
1390d3042a70SBarry Smith {
1391d3042a70SBarry Smith   PetscErrorCode ierr;
1392d3042a70SBarry Smith   PetscFunctionBegin;
1393d3042a70SBarry Smith   ierr = PetscUseMethod(mat,"MatDensePlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr);
1394d3042a70SBarry Smith   ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr);
1395d3042a70SBarry Smith   PetscFunctionReturn(0);
1396d3042a70SBarry Smith }
1397d3042a70SBarry Smith 
1398d3042a70SBarry Smith /*@
1399d3042a70SBarry Smith    MatDenseResetArray - Resets the matrix array to that it previously had before the call to MatDensePlaceArray()
1400d3042a70SBarry Smith 
1401d3042a70SBarry Smith    Not Collective
1402d3042a70SBarry Smith 
1403d3042a70SBarry Smith    Input Parameters:
1404d3042a70SBarry Smith .  mat - the matrix
1405d3042a70SBarry Smith 
1406d3042a70SBarry Smith    Notes:
1407d3042a70SBarry Smith    You can only call this after a call to MatDensePlaceArray()
1408d3042a70SBarry Smith 
1409d3042a70SBarry Smith    Level: developer
1410d3042a70SBarry Smith 
1411d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDensePlaceArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray()
1412d3042a70SBarry Smith 
1413d3042a70SBarry Smith @*/
1414d3042a70SBarry Smith PetscErrorCode  MatDenseResetArray(Mat mat)
1415d3042a70SBarry Smith {
1416d3042a70SBarry Smith   PetscErrorCode ierr;
1417d3042a70SBarry Smith   PetscFunctionBegin;
1418d3042a70SBarry Smith   ierr = PetscUseMethod(mat,"MatDenseResetArray_C",(Mat),(mat));CHKERRQ(ierr);
1419d3042a70SBarry Smith   ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr);
1420d3042a70SBarry Smith   PetscFunctionReturn(0);
1421d3042a70SBarry Smith }
1422d3042a70SBarry Smith 
14238965ea79SLois Curfman McInnes /*@C
142469b1f4b7SBarry Smith    MatCreateDense - Creates a parallel matrix in dense format.
14258965ea79SLois Curfman McInnes 
1426db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
1427db81eaa0SLois Curfman McInnes 
14288965ea79SLois Curfman McInnes    Input Parameters:
1429db81eaa0SLois Curfman McInnes +  comm - MPI communicator
14308965ea79SLois Curfman McInnes .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1431db81eaa0SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
14328965ea79SLois Curfman McInnes .  M - number of global rows (or PETSC_DECIDE to have calculated if m is given)
1433db81eaa0SLois Curfman McInnes .  N - number of global columns (or PETSC_DECIDE to have calculated if n is given)
14346cfe35ddSJose E. Roman -  data - optional location of matrix data.  Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc
1435dfc5480cSLois Curfman McInnes    to control all matrix memory allocation.
14368965ea79SLois Curfman McInnes 
14378965ea79SLois Curfman McInnes    Output Parameter:
1438477f1c0bSLois Curfman McInnes .  A - the matrix
14398965ea79SLois Curfman McInnes 
1440b259b22eSLois Curfman McInnes    Notes:
144139ddd567SLois Curfman McInnes    The dense format is fully compatible with standard Fortran 77
144239ddd567SLois Curfman McInnes    storage by columns.
14438965ea79SLois Curfman McInnes 
144418f449edSLois Curfman McInnes    The data input variable is intended primarily for Fortran programmers
144518f449edSLois Curfman McInnes    who wish to allocate their own matrix memory space.  Most users should
14466cfe35ddSJose E. Roman    set data=NULL (PETSC_NULL_SCALAR for Fortran users).
144718f449edSLois Curfman McInnes 
14488965ea79SLois Curfman McInnes    The user MUST specify either the local or global matrix dimensions
14498965ea79SLois Curfman McInnes    (possibly both).
14508965ea79SLois Curfman McInnes 
1451027ccd11SLois Curfman McInnes    Level: intermediate
1452027ccd11SLois Curfman McInnes 
145339ddd567SLois Curfman McInnes .keywords: matrix,dense, parallel
14548965ea79SLois Curfman McInnes 
145539ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues()
14568965ea79SLois Curfman McInnes @*/
145769b1f4b7SBarry Smith PetscErrorCode  MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A)
14588965ea79SLois Curfman McInnes {
14596849ba73SBarry Smith   PetscErrorCode ierr;
146013f74950SBarry Smith   PetscMPIInt    size;
14618965ea79SLois Curfman McInnes 
14623a40ed3dSBarry Smith   PetscFunctionBegin;
1463f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
1464f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
1465273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1466273d9f13SBarry Smith   if (size > 1) {
1467273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr);
1468273d9f13SBarry Smith     ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr);
14696cfe35ddSJose E. Roman     if (data) {  /* user provided data array, so no need to assemble */
14706cfe35ddSJose E. Roman       ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr);
14716cfe35ddSJose E. Roman       (*A)->assembled = PETSC_TRUE;
14726cfe35ddSJose E. Roman     }
1473273d9f13SBarry Smith   } else {
1474273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr);
1475273d9f13SBarry Smith     ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr);
14768c469469SLois Curfman McInnes   }
14773a40ed3dSBarry Smith   PetscFunctionReturn(0);
14788965ea79SLois Curfman McInnes }
14798965ea79SLois Curfman McInnes 
14806849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat)
14818965ea79SLois Curfman McInnes {
14828965ea79SLois Curfman McInnes   Mat            mat;
14833501a2bdSLois Curfman McInnes   Mat_MPIDense   *a,*oldmat = (Mat_MPIDense*)A->data;
1484dfbe8321SBarry Smith   PetscErrorCode ierr;
14858965ea79SLois Curfman McInnes 
14863a40ed3dSBarry Smith   PetscFunctionBegin;
14878965ea79SLois Curfman McInnes   *newmat = 0;
1488ce94432eSBarry Smith   ierr    = MatCreate(PetscObjectComm((PetscObject)A),&mat);CHKERRQ(ierr);
1489d0f46423SBarry Smith   ierr    = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
14907adad957SLisandro Dalcin   ierr    = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr);
1491834f8fabSBarry Smith   a       = (Mat_MPIDense*)mat->data;
1492e04c1aa4SHong Zhang   ierr    = PetscMemcpy(mat->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
14935aa7edbeSHong Zhang 
1494d5f3da31SBarry Smith   mat->factortype   = A->factortype;
1495c456f294SBarry Smith   mat->assembled    = PETSC_TRUE;
1496273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
14978965ea79SLois Curfman McInnes 
14988965ea79SLois Curfman McInnes   a->size         = oldmat->size;
14998965ea79SLois Curfman McInnes   a->rank         = oldmat->rank;
1500e0fa3b82SLois Curfman McInnes   mat->insertmode = NOT_SET_VALUES;
1501b9b97703SBarry Smith   a->nvec         = oldmat->nvec;
15023782ba37SSatish Balay   a->donotstash   = oldmat->donotstash;
1503e04c1aa4SHong Zhang 
15041e1e43feSBarry Smith   ierr = PetscLayoutReference(A->rmap,&mat->rmap);CHKERRQ(ierr);
15051e1e43feSBarry Smith   ierr = PetscLayoutReference(A->cmap,&mat->cmap);CHKERRQ(ierr);
15068965ea79SLois Curfman McInnes 
1507329f5518SBarry Smith   ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr);
15085609ef8eSBarry Smith   ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
15093bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
151001b82886SBarry Smith 
15118965ea79SLois Curfman McInnes   *newmat = mat;
15123a40ed3dSBarry Smith   PetscFunctionReturn(0);
15138965ea79SLois Curfman McInnes }
15148965ea79SLois Curfman McInnes 
15159d36ed5fSBarry Smith PetscErrorCode MatLoad_MPIDense_DenseInFile(MPI_Comm comm,PetscInt fd,PetscInt M,PetscInt N,Mat newmat)
151686d161a7SShri Abhyankar {
151786d161a7SShri Abhyankar   PetscErrorCode ierr;
151886d161a7SShri Abhyankar   PetscMPIInt    rank,size;
151974c13d95SBarry Smith   const PetscInt *rowners;
152074c13d95SBarry Smith   PetscInt       i,m,n,nz,j,mMax;
152186d161a7SShri Abhyankar   PetscScalar    *array,*vals,*vals_ptr;
15229d36ed5fSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)newmat->data;
152386d161a7SShri Abhyankar 
152486d161a7SShri Abhyankar   PetscFunctionBegin;
152586d161a7SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
152686d161a7SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
152786d161a7SShri Abhyankar 
152874c13d95SBarry Smith   /* determine ownership of rows and columns */
152974c13d95SBarry Smith   m = (newmat->rmap->n < 0) ? PETSC_DECIDE : newmat->rmap->n;
153074c13d95SBarry Smith   n = (newmat->cmap->n < 0) ? PETSC_DECIDE : newmat->cmap->n;
153186d161a7SShri Abhyankar 
153274c13d95SBarry Smith   ierr = MatSetSizes(newmat,m,n,M,N);CHKERRQ(ierr);
15339d36ed5fSBarry Smith   if (!a->A || !((Mat_SeqDense*)(a->A->data))->user_alloc) {
15340298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr);
15359d36ed5fSBarry Smith   }
15368c778c55SBarry Smith   ierr = MatDenseGetArray(newmat,&array);CHKERRQ(ierr);
153749467e7dSBarry Smith   ierr = MatGetLocalSize(newmat,&m,NULL);CHKERRQ(ierr);
153874c13d95SBarry Smith   ierr = MatGetOwnershipRanges(newmat,&rowners);CHKERRQ(ierr);
1539396e826eSBarry Smith   ierr = MPI_Reduce(&m,&mMax,1,MPIU_INT,MPI_MAX,0,comm);CHKERRQ(ierr);
154086d161a7SShri Abhyankar   if (!rank) {
15419d36ed5fSBarry Smith     ierr = PetscMalloc1(mMax*N,&vals);CHKERRQ(ierr);
154286d161a7SShri Abhyankar 
154386d161a7SShri Abhyankar     /* read in my part of the matrix numerical values  */
154486d161a7SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,m*N,PETSC_SCALAR);CHKERRQ(ierr);
154586d161a7SShri Abhyankar 
154686d161a7SShri Abhyankar     /* insert into matrix-by row (this is why cannot directly read into array */
154786d161a7SShri Abhyankar     vals_ptr = vals;
154886d161a7SShri Abhyankar     for (i=0; i<m; i++) {
154986d161a7SShri Abhyankar       for (j=0; j<N; j++) {
155086d161a7SShri Abhyankar         array[i + j*m] = *vals_ptr++;
155186d161a7SShri Abhyankar       }
155286d161a7SShri Abhyankar     }
155386d161a7SShri Abhyankar 
155486d161a7SShri Abhyankar     /* read in other processors and ship out */
155586d161a7SShri Abhyankar     for (i=1; i<size; i++) {
155686d161a7SShri Abhyankar       nz   = (rowners[i+1] - rowners[i])*N;
155786d161a7SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
1558a25532f0SBarry Smith       ierr = MPIULong_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)(newmat))->tag,comm);CHKERRQ(ierr);
155986d161a7SShri Abhyankar     }
156086d161a7SShri Abhyankar   } else {
156186d161a7SShri Abhyankar     /* receive numeric values */
1562785e854fSJed Brown     ierr = PetscMalloc1(m*N,&vals);CHKERRQ(ierr);
156386d161a7SShri Abhyankar 
156486d161a7SShri Abhyankar     /* receive message of values*/
1565a25532f0SBarry Smith     ierr = MPIULong_Recv(vals,m*N,MPIU_SCALAR,0,((PetscObject)(newmat))->tag,comm);CHKERRQ(ierr);
156686d161a7SShri Abhyankar 
156786d161a7SShri Abhyankar     /* insert into matrix-by row (this is why cannot directly read into array */
156886d161a7SShri Abhyankar     vals_ptr = vals;
156986d161a7SShri Abhyankar     for (i=0; i<m; i++) {
157086d161a7SShri Abhyankar       for (j=0; j<N; j++) {
157186d161a7SShri Abhyankar         array[i + j*m] = *vals_ptr++;
157286d161a7SShri Abhyankar       }
157386d161a7SShri Abhyankar     }
157486d161a7SShri Abhyankar   }
15758c778c55SBarry Smith   ierr = MatDenseRestoreArray(newmat,&array);CHKERRQ(ierr);
157686d161a7SShri Abhyankar   ierr = PetscFree(vals);CHKERRQ(ierr);
157786d161a7SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
157886d161a7SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
157986d161a7SShri Abhyankar   PetscFunctionReturn(0);
158086d161a7SShri Abhyankar }
158186d161a7SShri Abhyankar 
1582112444f4SShri Abhyankar PetscErrorCode MatLoad_MPIDense(Mat newmat,PetscViewer viewer)
158386d161a7SShri Abhyankar {
1584dfdea288SBarry Smith   Mat_MPIDense   *a;
158586d161a7SShri Abhyankar   PetscScalar    *vals,*svals;
1586ce94432eSBarry Smith   MPI_Comm       comm;
158786d161a7SShri Abhyankar   MPI_Status     status;
158849467e7dSBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*rowners,*sndcounts,m,n,maxnz;
158986d161a7SShri Abhyankar   PetscInt       header[4],*rowlengths = 0,M,N,*cols;
159049467e7dSBarry Smith   PetscInt       *ourlens,*procsnz = 0,jj,*mycols,*smycols;
15919d36ed5fSBarry Smith   PetscInt       i,nz,j,rstart,rend;
159286d161a7SShri Abhyankar   int            fd;
159386d161a7SShri Abhyankar   PetscErrorCode ierr;
159486d161a7SShri Abhyankar 
159586d161a7SShri Abhyankar   PetscFunctionBegin;
1596c98fd787SBarry Smith   /* force binary viewer to load .info file if it has not yet done so */
1597c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
1598ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
159986d161a7SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
160086d161a7SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
160186d161a7SShri Abhyankar   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
16025872f025SBarry Smith   if (!rank) {
160386d161a7SShri Abhyankar     ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr);
160486d161a7SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
160586d161a7SShri Abhyankar   }
160686d161a7SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
160786d161a7SShri Abhyankar   M    = header[1]; N = header[2]; nz = header[3];
160886d161a7SShri Abhyankar 
160986d161a7SShri Abhyankar   /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */
16109d36ed5fSBarry Smith   if (newmat->rmap->N < 0) newmat->rmap->N = M;
16119d36ed5fSBarry Smith   if (newmat->cmap->N < 0) newmat->cmap->N = N;
161286d161a7SShri Abhyankar 
16139d36ed5fSBarry Smith   if (newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",M,newmat->rmap->N);
16149d36ed5fSBarry Smith   if (newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",N,newmat->cmap->N);
161586d161a7SShri Abhyankar 
161686d161a7SShri Abhyankar   /*
161786d161a7SShri Abhyankar        Handle case where matrix is stored on disk as a dense matrix
161886d161a7SShri Abhyankar   */
161986d161a7SShri Abhyankar   if (nz == MATRIX_BINARY_FORMAT_DENSE) {
16209d36ed5fSBarry Smith     ierr = MatLoad_MPIDense_DenseInFile(comm,fd,M,N,newmat);CHKERRQ(ierr);
162186d161a7SShri Abhyankar     PetscFunctionReturn(0);
162286d161a7SShri Abhyankar   }
162386d161a7SShri Abhyankar 
162486d161a7SShri Abhyankar   /* determine ownership of all rows */
16252205254eSKarl Rupp   if (newmat->rmap->n < 0) {
16262205254eSKarl Rupp     ierr = PetscMPIIntCast(M/size + ((M % size) > rank),&m);CHKERRQ(ierr);
16272205254eSKarl Rupp   } else {
16282205254eSKarl Rupp     ierr = PetscMPIIntCast(newmat->rmap->n,&m);CHKERRQ(ierr);
16292205254eSKarl Rupp   }
163049467e7dSBarry Smith   if (newmat->cmap->n < 0) {
163149467e7dSBarry Smith     n = PETSC_DECIDE;
163249467e7dSBarry Smith   } else {
163349467e7dSBarry Smith     ierr = PetscMPIIntCast(newmat->cmap->n,&n);CHKERRQ(ierr);
163449467e7dSBarry Smith   }
163549467e7dSBarry Smith 
1636854ce69bSBarry Smith   ierr       = PetscMalloc1(size+2,&rowners);CHKERRQ(ierr);
163786d161a7SShri Abhyankar   ierr       = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
163886d161a7SShri Abhyankar   rowners[0] = 0;
163986d161a7SShri Abhyankar   for (i=2; i<=size; i++) {
164086d161a7SShri Abhyankar     rowners[i] += rowners[i-1];
164186d161a7SShri Abhyankar   }
164286d161a7SShri Abhyankar   rstart = rowners[rank];
164386d161a7SShri Abhyankar   rend   = rowners[rank+1];
164486d161a7SShri Abhyankar 
164586d161a7SShri Abhyankar   /* distribute row lengths to all processors */
164649467e7dSBarry Smith   ierr = PetscMalloc1(rend-rstart,&ourlens);CHKERRQ(ierr);
164786d161a7SShri Abhyankar   if (!rank) {
1648785e854fSJed Brown     ierr = PetscMalloc1(M,&rowlengths);CHKERRQ(ierr);
164986d161a7SShri Abhyankar     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
1650785e854fSJed Brown     ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr);
165186d161a7SShri Abhyankar     for (i=0; i<size; i++) sndcounts[i] = rowners[i+1] - rowners[i];
165286d161a7SShri Abhyankar     ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr);
165386d161a7SShri Abhyankar     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
165486d161a7SShri Abhyankar   } else {
165586d161a7SShri Abhyankar     ierr = MPI_Scatterv(0,0,0,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr);
165686d161a7SShri Abhyankar   }
165786d161a7SShri Abhyankar 
165886d161a7SShri Abhyankar   if (!rank) {
165986d161a7SShri Abhyankar     /* calculate the number of nonzeros on each processor */
1660785e854fSJed Brown     ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr);
166186d161a7SShri Abhyankar     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
166286d161a7SShri Abhyankar     for (i=0; i<size; i++) {
166386d161a7SShri Abhyankar       for (j=rowners[i]; j< rowners[i+1]; j++) {
166486d161a7SShri Abhyankar         procsnz[i] += rowlengths[j];
166586d161a7SShri Abhyankar       }
166686d161a7SShri Abhyankar     }
166786d161a7SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
166886d161a7SShri Abhyankar 
166986d161a7SShri Abhyankar     /* determine max buffer needed and allocate it */
167086d161a7SShri Abhyankar     maxnz = 0;
167186d161a7SShri Abhyankar     for (i=0; i<size; i++) {
167286d161a7SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
167386d161a7SShri Abhyankar     }
1674785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr);
167586d161a7SShri Abhyankar 
167686d161a7SShri Abhyankar     /* read in my part of the matrix column indices  */
167786d161a7SShri Abhyankar     nz   = procsnz[0];
1678785e854fSJed Brown     ierr = PetscMalloc1(nz,&mycols);CHKERRQ(ierr);
167986d161a7SShri Abhyankar     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
168086d161a7SShri Abhyankar 
168186d161a7SShri Abhyankar     /* read in every one elses and ship off */
168286d161a7SShri Abhyankar     for (i=1; i<size; i++) {
168386d161a7SShri Abhyankar       nz   = procsnz[i];
168486d161a7SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
168586d161a7SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
168686d161a7SShri Abhyankar     }
168786d161a7SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
168886d161a7SShri Abhyankar   } else {
168986d161a7SShri Abhyankar     /* determine buffer space needed for message */
169086d161a7SShri Abhyankar     nz = 0;
169186d161a7SShri Abhyankar     for (i=0; i<m; i++) {
169286d161a7SShri Abhyankar       nz += ourlens[i];
169386d161a7SShri Abhyankar     }
1694854ce69bSBarry Smith     ierr = PetscMalloc1(nz+1,&mycols);CHKERRQ(ierr);
169586d161a7SShri Abhyankar 
169686d161a7SShri Abhyankar     /* receive message of column indices*/
169786d161a7SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
169886d161a7SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
169986d161a7SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
170086d161a7SShri Abhyankar   }
170186d161a7SShri Abhyankar 
170249467e7dSBarry Smith   ierr = MatSetSizes(newmat,m,n,M,N);CHKERRQ(ierr);
1703dfdea288SBarry Smith   a = (Mat_MPIDense*)newmat->data;
17042e3566b0SBarry Smith   if (!a->A || !((Mat_SeqDense*)(a->A->data))->user_alloc) {
17050298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr);
1706dfdea288SBarry Smith   }
170786d161a7SShri Abhyankar 
170886d161a7SShri Abhyankar   if (!rank) {
1709785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&vals);CHKERRQ(ierr);
171086d161a7SShri Abhyankar 
171186d161a7SShri Abhyankar     /* read in my part of the matrix numerical values  */
171286d161a7SShri Abhyankar     nz   = procsnz[0];
171386d161a7SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
171486d161a7SShri Abhyankar 
171586d161a7SShri Abhyankar     /* insert into matrix */
171686d161a7SShri Abhyankar     jj      = rstart;
171786d161a7SShri Abhyankar     smycols = mycols;
171886d161a7SShri Abhyankar     svals   = vals;
171986d161a7SShri Abhyankar     for (i=0; i<m; i++) {
172086d161a7SShri Abhyankar       ierr     = MatSetValues(newmat,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
172186d161a7SShri Abhyankar       smycols += ourlens[i];
172286d161a7SShri Abhyankar       svals   += ourlens[i];
172386d161a7SShri Abhyankar       jj++;
172486d161a7SShri Abhyankar     }
172586d161a7SShri Abhyankar 
172686d161a7SShri Abhyankar     /* read in other processors and ship out */
172786d161a7SShri Abhyankar     for (i=1; i<size; i++) {
172886d161a7SShri Abhyankar       nz   = procsnz[i];
172986d161a7SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
173086d161a7SShri Abhyankar       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
173186d161a7SShri Abhyankar     }
173286d161a7SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
173386d161a7SShri Abhyankar   } else {
173486d161a7SShri Abhyankar     /* receive numeric values */
1735854ce69bSBarry Smith     ierr = PetscMalloc1(nz+1,&vals);CHKERRQ(ierr);
173686d161a7SShri Abhyankar 
173786d161a7SShri Abhyankar     /* receive message of values*/
173886d161a7SShri Abhyankar     ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr);
173986d161a7SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
174086d161a7SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
174186d161a7SShri Abhyankar 
174286d161a7SShri Abhyankar     /* insert into matrix */
174386d161a7SShri Abhyankar     jj      = rstart;
174486d161a7SShri Abhyankar     smycols = mycols;
174586d161a7SShri Abhyankar     svals   = vals;
174686d161a7SShri Abhyankar     for (i=0; i<m; i++) {
174786d161a7SShri Abhyankar       ierr     = MatSetValues(newmat,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
174886d161a7SShri Abhyankar       smycols += ourlens[i];
174986d161a7SShri Abhyankar       svals   += ourlens[i];
175086d161a7SShri Abhyankar       jj++;
175186d161a7SShri Abhyankar     }
175286d161a7SShri Abhyankar   }
175349467e7dSBarry Smith   ierr = PetscFree(ourlens);CHKERRQ(ierr);
175486d161a7SShri Abhyankar   ierr = PetscFree(vals);CHKERRQ(ierr);
175586d161a7SShri Abhyankar   ierr = PetscFree(mycols);CHKERRQ(ierr);
175686d161a7SShri Abhyankar   ierr = PetscFree(rowners);CHKERRQ(ierr);
175786d161a7SShri Abhyankar 
175886d161a7SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
175986d161a7SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
176086d161a7SShri Abhyankar   PetscFunctionReturn(0);
176186d161a7SShri Abhyankar }
176286d161a7SShri Abhyankar 
1763ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool  *flag)
17646e4ee0c6SHong Zhang {
17656e4ee0c6SHong Zhang   Mat_MPIDense   *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data;
17666e4ee0c6SHong Zhang   Mat            a,b;
1767ace3abfcSBarry Smith   PetscBool      flg;
17686e4ee0c6SHong Zhang   PetscErrorCode ierr;
176990ace30eSBarry Smith 
17706e4ee0c6SHong Zhang   PetscFunctionBegin;
17716e4ee0c6SHong Zhang   a    = matA->A;
17726e4ee0c6SHong Zhang   b    = matB->A;
17736e4ee0c6SHong Zhang   ierr = MatEqual(a,b,&flg);CHKERRQ(ierr);
1774b2566f29SBarry Smith   ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
17756e4ee0c6SHong Zhang   PetscFunctionReturn(0);
17766e4ee0c6SHong Zhang }
177790ace30eSBarry Smith 
1778baa3c1c6SHong Zhang PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(Mat A)
1779baa3c1c6SHong Zhang {
1780baa3c1c6SHong Zhang   PetscErrorCode        ierr;
1781baa3c1c6SHong Zhang   Mat_MPIDense          *a = (Mat_MPIDense*)A->data;
1782baa3c1c6SHong Zhang   Mat_TransMatMultDense *atb = a->atbdense;
1783baa3c1c6SHong Zhang 
1784baa3c1c6SHong Zhang   PetscFunctionBegin;
1785c5ef1628SHong Zhang   ierr = PetscFree3(atb->sendbuf,atb->atbarray,atb->recvcounts);CHKERRQ(ierr);
1786baa3c1c6SHong Zhang   ierr = (atb->destroy)(A);CHKERRQ(ierr);
1787baa3c1c6SHong Zhang   ierr = PetscFree(atb);CHKERRQ(ierr);
1788baa3c1c6SHong Zhang   PetscFunctionReturn(0);
1789baa3c1c6SHong Zhang }
1790baa3c1c6SHong Zhang 
1791cb20be35SHong Zhang PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C)
1792cb20be35SHong Zhang {
1793baa3c1c6SHong Zhang   Mat_MPIDense   *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data;
1794660d5466SHong Zhang   Mat_SeqDense   *aseq=(Mat_SeqDense*)(a->A)->data, *bseq=(Mat_SeqDense*)(b->A)->data;
1795baa3c1c6SHong Zhang   Mat_TransMatMultDense *atb = c->atbdense;
1796cb20be35SHong Zhang   PetscErrorCode ierr;
1797cb20be35SHong Zhang   MPI_Comm       comm;
1798d5017740SHong Zhang   PetscMPIInt    rank,size,*recvcounts=atb->recvcounts;
1799c5ef1628SHong Zhang   PetscScalar    *carray,*atbarray=atb->atbarray,*sendbuf=atb->sendbuf;
1800d5017740SHong Zhang   PetscInt       i,cN=C->cmap->N,cM=C->rmap->N,proc,k,j;
1801660d5466SHong Zhang   PetscScalar    _DOne=1.0,_DZero=0.0;
1802adc7a786SHong Zhang   PetscBLASInt   am,an,bn,aN;
1803e68c0b26SHong Zhang   const PetscInt *ranges;
1804cb20be35SHong Zhang 
1805cb20be35SHong Zhang   PetscFunctionBegin;
1806cb20be35SHong Zhang   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
1807cb20be35SHong Zhang   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
1808cb20be35SHong Zhang   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1809e68c0b26SHong Zhang 
1810c5ef1628SHong Zhang   /* compute atbarray = aseq^T * bseq */
1811660d5466SHong Zhang   ierr = PetscBLASIntCast(a->A->cmap->n,&an);CHKERRQ(ierr);
1812660d5466SHong Zhang   ierr = PetscBLASIntCast(b->A->cmap->n,&bn);CHKERRQ(ierr);
1813660d5466SHong Zhang   ierr = PetscBLASIntCast(a->A->rmap->n,&am);CHKERRQ(ierr);
1814adc7a786SHong Zhang   ierr = PetscBLASIntCast(A->cmap->N,&aN);CHKERRQ(ierr);
1815adc7a786SHong Zhang   PetscStackCallBLAS("BLASgemm",BLASgemm_("T","N",&an,&bn,&am,&_DOne,aseq->v,&aseq->lda,bseq->v,&bseq->lda,&_DZero,atbarray,&aN));
1816cb20be35SHong Zhang 
1817cb20be35SHong Zhang   ierr = MatGetOwnershipRanges(C,&ranges);CHKERRQ(ierr);
1818c5ef1628SHong Zhang   for (i=0; i<size; i++) recvcounts[i] = (ranges[i+1] - ranges[i])*cN;
1819cb20be35SHong Zhang 
1820660d5466SHong Zhang   /* arrange atbarray into sendbuf */
1821cb20be35SHong Zhang   k = 0;
1822cb20be35SHong Zhang   for (proc=0; proc<size; proc++) {
1823baa3c1c6SHong Zhang     for (j=0; j<cN; j++) {
1824c5ef1628SHong Zhang       for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*cM];
1825cb20be35SHong Zhang     }
1826cb20be35SHong Zhang   }
1827c5ef1628SHong Zhang   /* sum all atbarray to local values of C */
1828660d5466SHong Zhang   ierr = MatDenseGetArray(c->A,&carray);CHKERRQ(ierr);
18293462b7efSHong Zhang   ierr = MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm);CHKERRQ(ierr);
1830660d5466SHong Zhang   ierr = MatDenseRestoreArray(c->A,&carray);CHKERRQ(ierr);
1831cb20be35SHong Zhang   PetscFunctionReturn(0);
1832cb20be35SHong Zhang }
1833cb20be35SHong Zhang 
1834cb20be35SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C)
1835cb20be35SHong Zhang {
1836cb20be35SHong Zhang   PetscErrorCode        ierr;
1837baa3c1c6SHong Zhang   Mat                   Cdense;
1838cb20be35SHong Zhang   MPI_Comm              comm;
1839baa3c1c6SHong Zhang   PetscMPIInt           size;
1840660d5466SHong Zhang   PetscInt              cm=A->cmap->n,cM,cN=B->cmap->N;
1841baa3c1c6SHong Zhang   Mat_MPIDense          *c;
1842baa3c1c6SHong Zhang   Mat_TransMatMultDense *atb;
1843cb20be35SHong Zhang 
1844cb20be35SHong Zhang   PetscFunctionBegin;
1845baa3c1c6SHong Zhang   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
1846cb20be35SHong Zhang   if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) {
1847cb20be35SHong Zhang     SETERRQ4(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend);
1848cb20be35SHong Zhang   }
1849cb20be35SHong Zhang 
1850baa3c1c6SHong Zhang   /* create matrix product Cdense */
1851baa3c1c6SHong Zhang   ierr = MatCreate(comm,&Cdense);CHKERRQ(ierr);
1852660d5466SHong Zhang   ierr = MatSetSizes(Cdense,cm,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
1853baa3c1c6SHong Zhang   ierr = MatSetType(Cdense,MATMPIDENSE);CHKERRQ(ierr);
1854baa3c1c6SHong Zhang   ierr = MatMPIDenseSetPreallocation(Cdense,NULL);CHKERRQ(ierr);
1855baa3c1c6SHong Zhang   ierr = MatAssemblyBegin(Cdense,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1856baa3c1c6SHong Zhang   ierr = MatAssemblyEnd(Cdense,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1857baa3c1c6SHong Zhang   *C   = Cdense;
1858baa3c1c6SHong Zhang 
1859baa3c1c6SHong Zhang   /* create data structure for reuse Cdense */
1860baa3c1c6SHong Zhang   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1861baa3c1c6SHong Zhang   ierr = PetscNew(&atb);CHKERRQ(ierr);
1862660d5466SHong Zhang   cM = Cdense->rmap->N;
1863c5ef1628SHong Zhang   ierr = PetscMalloc3(cM*cN,&atb->sendbuf,cM*cN,&atb->atbarray,size,&atb->recvcounts);CHKERRQ(ierr);
1864baa3c1c6SHong Zhang 
1865baa3c1c6SHong Zhang   c                    = (Mat_MPIDense*)Cdense->data;
1866baa3c1c6SHong Zhang   c->atbdense          = atb;
1867baa3c1c6SHong Zhang   atb->destroy         = Cdense->ops->destroy;
1868baa3c1c6SHong Zhang   Cdense->ops->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense;
1869cb20be35SHong Zhang   PetscFunctionReturn(0);
1870cb20be35SHong Zhang }
1871cb20be35SHong Zhang 
1872cb20be35SHong Zhang PetscErrorCode MatTransposeMatMult_MPIDense_MPIDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C)
1873cb20be35SHong Zhang {
1874cb20be35SHong Zhang   PetscErrorCode ierr;
1875cb20be35SHong Zhang 
1876cb20be35SHong Zhang   PetscFunctionBegin;
1877cb20be35SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
1878cb20be35SHong Zhang     ierr = MatTransposeMatMultSymbolic_MPIDense_MPIDense(A,B,fill,C);CHKERRQ(ierr);
1879cb20be35SHong Zhang   }
1880cb20be35SHong Zhang   ierr = MatTransposeMatMultNumeric_MPIDense_MPIDense(A,B,*C);CHKERRQ(ierr);
1881cb20be35SHong Zhang   PetscFunctionReturn(0);
1882cb20be35SHong Zhang }
1883320f2790SHong Zhang 
1884320f2790SHong Zhang PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(Mat A)
1885320f2790SHong Zhang {
1886320f2790SHong Zhang   PetscErrorCode   ierr;
1887320f2790SHong Zhang   Mat_MPIDense     *a = (Mat_MPIDense*)A->data;
1888320f2790SHong Zhang   Mat_MatMultDense *ab = a->abdense;
1889320f2790SHong Zhang 
1890320f2790SHong Zhang   PetscFunctionBegin;
1891320f2790SHong Zhang   ierr = MatDestroy(&ab->Ce);CHKERRQ(ierr);
1892320f2790SHong Zhang   ierr = MatDestroy(&ab->Ae);CHKERRQ(ierr);
1893320f2790SHong Zhang   ierr = MatDestroy(&ab->Be);CHKERRQ(ierr);
1894320f2790SHong Zhang 
1895320f2790SHong Zhang   ierr = (ab->destroy)(A);CHKERRQ(ierr);
1896320f2790SHong Zhang   ierr = PetscFree(ab);CHKERRQ(ierr);
1897320f2790SHong Zhang   PetscFunctionReturn(0);
1898320f2790SHong Zhang }
1899320f2790SHong Zhang 
19005242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
1901320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C)
1902320f2790SHong Zhang {
1903320f2790SHong Zhang   PetscErrorCode   ierr;
1904320f2790SHong Zhang   Mat_MPIDense     *c=(Mat_MPIDense*)C->data;
1905320f2790SHong Zhang   Mat_MatMultDense *ab=c->abdense;
1906320f2790SHong Zhang 
1907320f2790SHong Zhang   PetscFunctionBegin;
1908de0a22f0SHong Zhang   ierr = MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae);CHKERRQ(ierr);
1909de0a22f0SHong Zhang   ierr = MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be);CHKERRQ(ierr);
1910320f2790SHong Zhang   ierr = MatMatMultNumeric(ab->Ae,ab->Be,ab->Ce);CHKERRQ(ierr);
1911de0a22f0SHong Zhang   ierr = MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C);CHKERRQ(ierr);
1912320f2790SHong Zhang   PetscFunctionReturn(0);
1913320f2790SHong Zhang }
1914320f2790SHong Zhang 
1915320f2790SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C)
1916320f2790SHong Zhang {
1917320f2790SHong Zhang   PetscErrorCode   ierr;
1918320f2790SHong Zhang   Mat              Ae,Be,Ce;
1919320f2790SHong Zhang   Mat_MPIDense     *c;
1920320f2790SHong Zhang   Mat_MatMultDense *ab;
1921320f2790SHong Zhang 
1922320f2790SHong Zhang   PetscFunctionBegin;
1923320f2790SHong Zhang   if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) {
1924378336b6SHong Zhang     SETERRQ4(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend);
1925320f2790SHong Zhang   }
1926320f2790SHong Zhang 
1927320f2790SHong Zhang   /* convert A and B to Elemental matrices Ae and Be */
1928320f2790SHong Zhang   ierr = MatConvert(A,MATELEMENTAL,MAT_INITIAL_MATRIX, &Ae);CHKERRQ(ierr);
1929320f2790SHong Zhang   ierr = MatConvert(B,MATELEMENTAL,MAT_INITIAL_MATRIX, &Be);CHKERRQ(ierr);
1930320f2790SHong Zhang 
1931320f2790SHong Zhang   /* Ce = Ae*Be */
1932320f2790SHong Zhang   ierr = MatMatMultSymbolic(Ae,Be,fill,&Ce);CHKERRQ(ierr);
1933320f2790SHong Zhang   ierr = MatMatMultNumeric(Ae,Be,Ce);CHKERRQ(ierr);
1934320f2790SHong Zhang 
1935320f2790SHong Zhang   /* convert Ce to C */
1936320f2790SHong Zhang   ierr = MatConvert(Ce,MATMPIDENSE,MAT_INITIAL_MATRIX,C);CHKERRQ(ierr);
1937320f2790SHong Zhang 
1938320f2790SHong Zhang   /* create data structure for reuse Cdense */
1939320f2790SHong Zhang   ierr = PetscNew(&ab);CHKERRQ(ierr);
1940320f2790SHong Zhang   c                  = (Mat_MPIDense*)(*C)->data;
1941320f2790SHong Zhang   c->abdense         = ab;
1942320f2790SHong Zhang 
1943320f2790SHong Zhang   ab->Ae             = Ae;
1944320f2790SHong Zhang   ab->Be             = Be;
1945320f2790SHong Zhang   ab->Ce             = Ce;
1946320f2790SHong Zhang   ab->destroy        = (*C)->ops->destroy;
1947320f2790SHong Zhang   (*C)->ops->destroy        = MatDestroy_MatMatMult_MPIDense_MPIDense;
19489775878aSHong Zhang   (*C)->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense;
1949320f2790SHong Zhang   PetscFunctionReturn(0);
1950320f2790SHong Zhang }
1951320f2790SHong Zhang 
1952150d2497SBarry Smith PETSC_INTERN PetscErrorCode MatMatMult_MPIDense_MPIDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C)
1953320f2790SHong Zhang {
1954320f2790SHong Zhang   PetscErrorCode ierr;
1955320f2790SHong Zhang 
1956320f2790SHong Zhang   PetscFunctionBegin;
1957320f2790SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* simbolic product includes numeric product */
195857299f2fSHong Zhang     ierr = PetscLogEventBegin(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr);
1959320f2790SHong Zhang     ierr = MatMatMultSymbolic_MPIDense_MPIDense(A,B,fill,C);CHKERRQ(ierr);
196057299f2fSHong Zhang     ierr = PetscLogEventEnd(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr);
1961320f2790SHong Zhang   } else {
196257299f2fSHong Zhang     ierr = PetscLogEventBegin(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr);
1963320f2790SHong Zhang     ierr = MatMatMultNumeric_MPIDense_MPIDense(A,B,*C);CHKERRQ(ierr);
196457299f2fSHong Zhang     ierr = PetscLogEventEnd(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr);
1965320f2790SHong Zhang   }
1966320f2790SHong Zhang   PetscFunctionReturn(0);
1967320f2790SHong Zhang }
19685242a7b1SHong Zhang #endif
1969