1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 4ed3cc1f0SBarry Smith */ 5ed3cc1f0SBarry Smith 604fea9ffSBarry Smith 7c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 88949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 9baa3c1c6SHong Zhang #include <petscblaslapack.h> 108965ea79SLois Curfman McInnes 11ab92ecdeSBarry Smith /*@ 12ab92ecdeSBarry Smith 13ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 14ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 15ab92ecdeSBarry Smith 16ab92ecdeSBarry Smith Input Parameter: 17ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 18ab92ecdeSBarry Smith 19ab92ecdeSBarry Smith Output Parameter: 20ab92ecdeSBarry Smith . B - the inner matrix 21ab92ecdeSBarry Smith 228e6c10adSSatish Balay Level: intermediate 238e6c10adSSatish Balay 24ab92ecdeSBarry Smith @*/ 25ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 26ab92ecdeSBarry Smith { 27ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 28ab92ecdeSBarry Smith PetscErrorCode ierr; 29ace3abfcSBarry Smith PetscBool flg; 30ab92ecdeSBarry Smith 31ab92ecdeSBarry Smith PetscFunctionBegin; 32251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr); 332205254eSKarl Rupp if (flg) *B = mat->A; 342205254eSKarl Rupp else *B = A; 35ab92ecdeSBarry Smith PetscFunctionReturn(0); 36ab92ecdeSBarry Smith } 37ab92ecdeSBarry Smith 38ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 39ba8c8a56SBarry Smith { 40ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 41ba8c8a56SBarry Smith PetscErrorCode ierr; 42d0f46423SBarry Smith PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 43ba8c8a56SBarry Smith 44ba8c8a56SBarry Smith PetscFunctionBegin; 45e7e72b3dSBarry Smith if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 46ba8c8a56SBarry Smith lrow = row - rstart; 47ba8c8a56SBarry Smith ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr); 48ba8c8a56SBarry Smith PetscFunctionReturn(0); 49ba8c8a56SBarry Smith } 50ba8c8a56SBarry Smith 51ba8c8a56SBarry Smith PetscErrorCode MatRestoreRow_MPIDense(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 52ba8c8a56SBarry Smith { 53ba8c8a56SBarry Smith PetscErrorCode ierr; 54ba8c8a56SBarry Smith 55ba8c8a56SBarry Smith PetscFunctionBegin; 56ba8c8a56SBarry Smith if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);} 57ba8c8a56SBarry Smith if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);} 58ba8c8a56SBarry Smith PetscFunctionReturn(0); 59ba8c8a56SBarry Smith } 60ba8c8a56SBarry Smith 6111bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A,Mat *a) 620de54da6SSatish Balay { 630de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 646849ba73SBarry Smith PetscErrorCode ierr; 65d0f46423SBarry Smith PetscInt m = A->rmap->n,rstart = A->rmap->rstart; 6687828ca2SBarry Smith PetscScalar *array; 670de54da6SSatish Balay MPI_Comm comm; 6811bd1e4dSLisandro Dalcin Mat B; 690de54da6SSatish Balay 700de54da6SSatish Balay PetscFunctionBegin; 71e32f2f54SBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported."); 720de54da6SSatish Balay 7311bd1e4dSLisandro Dalcin ierr = PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B);CHKERRQ(ierr); 7411bd1e4dSLisandro Dalcin if (!B) { 750de54da6SSatish Balay ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr); 7611bd1e4dSLisandro Dalcin ierr = MatCreate(comm,&B);CHKERRQ(ierr); 7711bd1e4dSLisandro Dalcin ierr = MatSetSizes(B,m,m,m,m);CHKERRQ(ierr); 7811bd1e4dSLisandro Dalcin ierr = MatSetType(B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr); 798c778c55SBarry Smith ierr = MatDenseGetArray(mdn->A,&array);CHKERRQ(ierr); 8011bd1e4dSLisandro Dalcin ierr = MatSeqDenseSetPreallocation(B,array+m*rstart);CHKERRQ(ierr); 818c778c55SBarry Smith ierr = MatDenseRestoreArray(mdn->A,&array);CHKERRQ(ierr); 8211bd1e4dSLisandro Dalcin ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 8311bd1e4dSLisandro Dalcin ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 8411bd1e4dSLisandro Dalcin ierr = PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B);CHKERRQ(ierr); 8511bd1e4dSLisandro Dalcin *a = B; 8611bd1e4dSLisandro Dalcin ierr = MatDestroy(&B);CHKERRQ(ierr); 872205254eSKarl Rupp } else *a = B; 880de54da6SSatish Balay PetscFunctionReturn(0); 890de54da6SSatish Balay } 900de54da6SSatish Balay 9113f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 928965ea79SLois Curfman McInnes { 9339b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 94dfbe8321SBarry Smith PetscErrorCode ierr; 95d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 96ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 978965ea79SLois Curfman McInnes 983a40ed3dSBarry Smith PetscFunctionBegin; 998965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1005ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 101e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1028965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1038965ea79SLois Curfman McInnes row = idxm[i] - rstart; 10439b7565bSBarry Smith if (roworiented) { 10539b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr); 1063a40ed3dSBarry Smith } else { 1078965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1085ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 109e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 11039b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr); 11139b7565bSBarry Smith } 1128965ea79SLois Curfman McInnes } 1132205254eSKarl Rupp } else if (!A->donotstash) { 1145080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 11539b7565bSBarry Smith if (roworiented) { 116b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 117d36fbae8SSatish Balay } else { 118b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 11939b7565bSBarry Smith } 120b49de8d1SLois Curfman McInnes } 121b49de8d1SLois Curfman McInnes } 1223a40ed3dSBarry Smith PetscFunctionReturn(0); 123b49de8d1SLois Curfman McInnes } 124b49de8d1SLois Curfman McInnes 12513f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 126b49de8d1SLois Curfman McInnes { 127b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 128dfbe8321SBarry Smith PetscErrorCode ierr; 129d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 130b49de8d1SLois Curfman McInnes 1313a40ed3dSBarry Smith PetscFunctionBegin; 132b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 133e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */ 134e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 135b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 136b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 137b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 138e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */ 139e7e72b3dSBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 140b49de8d1SLois Curfman McInnes ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr); 141b49de8d1SLois Curfman McInnes } 142e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 1438965ea79SLois Curfman McInnes } 1443a40ed3dSBarry Smith PetscFunctionReturn(0); 1458965ea79SLois Curfman McInnes } 1468965ea79SLois Curfman McInnes 147d3042a70SBarry Smith static PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar *array[]) 148ff14e315SSatish Balay { 149ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 150dfbe8321SBarry Smith PetscErrorCode ierr; 151ff14e315SSatish Balay 1523a40ed3dSBarry Smith PetscFunctionBegin; 1538c778c55SBarry Smith ierr = MatDenseGetArray(a->A,array);CHKERRQ(ierr); 1543a40ed3dSBarry Smith PetscFunctionReturn(0); 155ff14e315SSatish Balay } 156ff14e315SSatish Balay 157d3042a70SBarry Smith static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A,const PetscScalar array[]) 158d3042a70SBarry Smith { 159d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 160d3042a70SBarry Smith PetscErrorCode ierr; 161d3042a70SBarry Smith 162d3042a70SBarry Smith PetscFunctionBegin; 163d3042a70SBarry Smith ierr = MatDensePlaceArray(a->A,array);CHKERRQ(ierr); 164d3042a70SBarry Smith PetscFunctionReturn(0); 165d3042a70SBarry Smith } 166d3042a70SBarry Smith 167d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_MPIDense(Mat A) 168d3042a70SBarry Smith { 169d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 170d3042a70SBarry Smith PetscErrorCode ierr; 171d3042a70SBarry Smith 172d3042a70SBarry Smith PetscFunctionBegin; 173d3042a70SBarry Smith ierr = MatDenseResetArray(a->A);CHKERRQ(ierr); 174d3042a70SBarry Smith PetscFunctionReturn(0); 175d3042a70SBarry Smith } 176d3042a70SBarry Smith 1777dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B) 178ca3fa75bSLois Curfman McInnes { 179ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 180ca3fa75bSLois Curfman McInnes Mat_SeqDense *lmat = (Mat_SeqDense*)mat->A->data; 1816849ba73SBarry Smith PetscErrorCode ierr; 1824aa3045dSJed Brown PetscInt i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols; 1835d0c19d7SBarry Smith const PetscInt *irow,*icol; 18487828ca2SBarry Smith PetscScalar *av,*bv,*v = lmat->v; 185ca3fa75bSLois Curfman McInnes Mat newmat; 1864aa3045dSJed Brown IS iscol_local; 187ca3fa75bSLois Curfman McInnes 188ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 1894aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 190ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 1914aa3045dSJed Brown ierr = ISGetIndices(iscol_local,&icol);CHKERRQ(ierr); 192b9b97703SBarry Smith ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 193b9b97703SBarry Smith ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 1944aa3045dSJed Brown ierr = ISGetSize(iscol,&Ncols);CHKERRQ(ierr); /* global number of columns, size of iscol_local */ 195ca3fa75bSLois Curfman McInnes 196ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 1977eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 1987eba5e9cSLois Curfman McInnes original matrix! */ 199ca3fa75bSLois Curfman McInnes 200ca3fa75bSLois Curfman McInnes ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr); 2017eba5e9cSLois Curfman McInnes ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 202ca3fa75bSLois Curfman McInnes 203ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 204ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 205e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 2067eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 207ca3fa75bSLois Curfman McInnes newmat = *B; 208ca3fa75bSLois Curfman McInnes } else { 209ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 210ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr); 2114aa3045dSJed Brown ierr = MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols);CHKERRQ(ierr); 2127adad957SLisandro Dalcin ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 2130298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 214ca3fa75bSLois Curfman McInnes } 215ca3fa75bSLois Curfman McInnes 216ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 217ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 218ca3fa75bSLois Curfman McInnes bv = ((Mat_SeqDense*)newmatd->A->data)->v; 219ca3fa75bSLois Curfman McInnes 2204aa3045dSJed Brown for (i=0; i<Ncols; i++) { 22125a33276SHong Zhang av = v + ((Mat_SeqDense*)mat->A->data)->lda*icol[i]; 222ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 2237eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 224ca3fa75bSLois Curfman McInnes } 225ca3fa75bSLois Curfman McInnes } 226ca3fa75bSLois Curfman McInnes 227ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 228ca3fa75bSLois Curfman McInnes ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 229ca3fa75bSLois Curfman McInnes ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 230ca3fa75bSLois Curfman McInnes 231ca3fa75bSLois Curfman McInnes /* Free work space */ 232ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 2335bdf786aSShri Abhyankar ierr = ISRestoreIndices(iscol_local,&icol);CHKERRQ(ierr); 23432bb1f2dSLisandro Dalcin ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 235ca3fa75bSLois Curfman McInnes *B = newmat; 236ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 237ca3fa75bSLois Curfman McInnes } 238ca3fa75bSLois Curfman McInnes 2398c778c55SBarry Smith PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar *array[]) 240ff14e315SSatish Balay { 24173a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 24273a71a0fSBarry Smith PetscErrorCode ierr; 24373a71a0fSBarry Smith 2443a40ed3dSBarry Smith PetscFunctionBegin; 2458c778c55SBarry Smith ierr = MatDenseRestoreArray(a->A,array);CHKERRQ(ierr); 2463a40ed3dSBarry Smith PetscFunctionReturn(0); 247ff14e315SSatish Balay } 248ff14e315SSatish Balay 249dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 2508965ea79SLois Curfman McInnes { 25139ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 252ce94432eSBarry Smith MPI_Comm comm; 253dfbe8321SBarry Smith PetscErrorCode ierr; 25413f74950SBarry Smith PetscInt nstash,reallocs; 2558965ea79SLois Curfman McInnes InsertMode addv; 2568965ea79SLois Curfman McInnes 2573a40ed3dSBarry Smith PetscFunctionBegin; 258ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr); 2598965ea79SLois Curfman McInnes /* make sure all processors are either in INSERTMODE or ADDMODE */ 260b2566f29SBarry Smith ierr = MPIU_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,comm);CHKERRQ(ierr); 261ce94432eSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Cannot mix adds/inserts on different procs"); 262e0fa3b82SLois Curfman McInnes mat->insertmode = addv; /* in case this processor had no cache */ 2638965ea79SLois Curfman McInnes 264d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 2658798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 266ae15b995SBarry Smith ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 2673a40ed3dSBarry Smith PetscFunctionReturn(0); 2688965ea79SLois Curfman McInnes } 2698965ea79SLois Curfman McInnes 270dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 2718965ea79SLois Curfman McInnes { 27239ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 2736849ba73SBarry Smith PetscErrorCode ierr; 27413f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 27513f74950SBarry Smith PetscMPIInt n; 27687828ca2SBarry Smith PetscScalar *val; 2778965ea79SLois Curfman McInnes 2783a40ed3dSBarry Smith PetscFunctionBegin; 2798965ea79SLois Curfman McInnes /* wait on receives */ 2807ef1d9bdSSatish Balay while (1) { 2818798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 2827ef1d9bdSSatish Balay if (!flg) break; 2838965ea79SLois Curfman McInnes 2847ef1d9bdSSatish Balay for (i=0; i<n;) { 2857ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 2862205254eSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 2872205254eSKarl Rupp if (row[j] != rstart) break; 2882205254eSKarl Rupp } 2897ef1d9bdSSatish Balay if (j < n) ncols = j-i; 2907ef1d9bdSSatish Balay else ncols = n-i; 2917ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 2924b4eb8d3SJed Brown ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 2937ef1d9bdSSatish Balay i = j; 2948965ea79SLois Curfman McInnes } 2957ef1d9bdSSatish Balay } 2968798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 2978965ea79SLois Curfman McInnes 29839ddd567SLois Curfman McInnes ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr); 29939ddd567SLois Curfman McInnes ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr); 3008965ea79SLois Curfman McInnes 3016d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 30239ddd567SLois Curfman McInnes ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 3038965ea79SLois Curfman McInnes } 3043a40ed3dSBarry Smith PetscFunctionReturn(0); 3058965ea79SLois Curfman McInnes } 3068965ea79SLois Curfman McInnes 307dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 3088965ea79SLois Curfman McInnes { 309dfbe8321SBarry Smith PetscErrorCode ierr; 31039ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3113a40ed3dSBarry Smith 3123a40ed3dSBarry Smith PetscFunctionBegin; 3133a40ed3dSBarry Smith ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 3143a40ed3dSBarry Smith PetscFunctionReturn(0); 3158965ea79SLois Curfman McInnes } 3168965ea79SLois Curfman McInnes 3178965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the 3188965ea79SLois Curfman McInnes matrix is square and the column and row owerships are identical. 3198965ea79SLois Curfman McInnes This is a BUG. The only way to fix it seems to be to access 3203501a2bdSLois Curfman McInnes mdn->A and mdn->B directly and not through the MatZeroRows() 3218965ea79SLois Curfman McInnes routine. 3228965ea79SLois Curfman McInnes */ 3232b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 3248965ea79SLois Curfman McInnes { 32539ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3266849ba73SBarry Smith PetscErrorCode ierr; 327d0f46423SBarry Smith PetscInt i,*owners = A->rmap->range; 32876ec1555SBarry Smith PetscInt *sizes,j,idx,nsends; 32913f74950SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 3307adad957SLisandro Dalcin PetscInt *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source; 33113f74950SBarry Smith PetscInt *lens,*lrows,*values; 33213f74950SBarry Smith PetscMPIInt n,imdex,rank = l->rank,size = l->size; 333ce94432eSBarry Smith MPI_Comm comm; 3348965ea79SLois Curfman McInnes MPI_Request *send_waits,*recv_waits; 3358965ea79SLois Curfman McInnes MPI_Status recv_status,*send_status; 336ace3abfcSBarry Smith PetscBool found; 33797b48c8fSBarry Smith const PetscScalar *xx; 33897b48c8fSBarry Smith PetscScalar *bb; 3398965ea79SLois Curfman McInnes 3403a40ed3dSBarry Smith PetscFunctionBegin; 341ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 342ce94432eSBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(comm,PETSC_ERR_SUP,"Only handles square matrices"); 343b9679d65SBarry Smith if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only handles matrices with identical column and row ownership"); 3448965ea79SLois Curfman McInnes /* first count number of contributors to each processor */ 345f628708eSJed Brown ierr = PetscCalloc1(2*size,&sizes);CHKERRQ(ierr); 346037dbc42SBarry Smith ierr = PetscMalloc1(N+1,&owner);CHKERRQ(ierr); /* see note*/ 3478965ea79SLois Curfman McInnes for (i=0; i<N; i++) { 3488965ea79SLois Curfman McInnes idx = rows[i]; 34935d8aa7fSBarry Smith found = PETSC_FALSE; 3508965ea79SLois Curfman McInnes for (j=0; j<size; j++) { 3518965ea79SLois Curfman McInnes if (idx >= owners[j] && idx < owners[j+1]) { 35276ec1555SBarry Smith sizes[2*j]++; sizes[2*j+1] = 1; owner[i] = j; found = PETSC_TRUE; break; 3538965ea79SLois Curfman McInnes } 3548965ea79SLois Curfman McInnes } 355e32f2f54SBarry Smith if (!found) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 3568965ea79SLois Curfman McInnes } 3572205254eSKarl Rupp nsends = 0; 35876ec1555SBarry Smith for (i=0; i<size; i++) nsends += sizes[2*i+1]; 3598965ea79SLois Curfman McInnes 3608965ea79SLois Curfman McInnes /* inform other processors of number of messages and max length*/ 36176ec1555SBarry Smith ierr = PetscMaxSum(comm,sizes,&nmax,&nrecvs);CHKERRQ(ierr); 3628965ea79SLois Curfman McInnes 3638965ea79SLois Curfman McInnes /* post receives: */ 364785e854fSJed Brown ierr = PetscMalloc1((nrecvs+1)*(nmax+1),&rvalues);CHKERRQ(ierr); 365854ce69bSBarry Smith ierr = PetscMalloc1(nrecvs+1,&recv_waits);CHKERRQ(ierr); 3668965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 36713f74950SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 3688965ea79SLois Curfman McInnes } 3698965ea79SLois Curfman McInnes 3708965ea79SLois Curfman McInnes /* do sends: 3718965ea79SLois Curfman McInnes 1) starts[i] gives the starting index in svalues for stuff going to 3728965ea79SLois Curfman McInnes the ith processor 3738965ea79SLois Curfman McInnes */ 374854ce69bSBarry Smith ierr = PetscMalloc1(N+1,&svalues);CHKERRQ(ierr); 375854ce69bSBarry Smith ierr = PetscMalloc1(nsends+1,&send_waits);CHKERRQ(ierr); 376854ce69bSBarry Smith ierr = PetscMalloc1(size+1,&starts);CHKERRQ(ierr); 3778965ea79SLois Curfman McInnes 3788965ea79SLois Curfman McInnes starts[0] = 0; 37976ec1555SBarry Smith for (i=1; i<size; i++) starts[i] = starts[i-1] + sizes[2*i-2]; 3802205254eSKarl Rupp for (i=0; i<N; i++) svalues[starts[owner[i]]++] = rows[i]; 3812205254eSKarl Rupp 3822205254eSKarl Rupp starts[0] = 0; 38376ec1555SBarry Smith for (i=1; i<size+1; i++) starts[i] = starts[i-1] + sizes[2*i-2]; 3848965ea79SLois Curfman McInnes count = 0; 3858965ea79SLois Curfman McInnes for (i=0; i<size; i++) { 38676ec1555SBarry Smith if (sizes[2*i+1]) { 38776ec1555SBarry Smith ierr = MPI_Isend(svalues+starts[i],sizes[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 3888965ea79SLois Curfman McInnes } 3898965ea79SLois Curfman McInnes } 390606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 3918965ea79SLois Curfman McInnes 3928965ea79SLois Curfman McInnes base = owners[rank]; 3938965ea79SLois Curfman McInnes 3948965ea79SLois Curfman McInnes /* wait on receives */ 395dcca6d9dSJed Brown ierr = PetscMalloc2(nrecvs,&lens,nrecvs,&source);CHKERRQ(ierr); 39674ed9c26SBarry Smith count = nrecvs; 39774ed9c26SBarry Smith slen = 0; 3988965ea79SLois Curfman McInnes while (count) { 399ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 4008965ea79SLois Curfman McInnes /* unpack receives into our local space */ 40113f74950SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 4022205254eSKarl Rupp 4038965ea79SLois Curfman McInnes source[imdex] = recv_status.MPI_SOURCE; 4048965ea79SLois Curfman McInnes lens[imdex] = n; 4058965ea79SLois Curfman McInnes slen += n; 4068965ea79SLois Curfman McInnes count--; 4078965ea79SLois Curfman McInnes } 408606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 4098965ea79SLois Curfman McInnes 4108965ea79SLois Curfman McInnes /* move the data into the send scatter */ 411854ce69bSBarry Smith ierr = PetscMalloc1(slen+1,&lrows);CHKERRQ(ierr); 4128965ea79SLois Curfman McInnes count = 0; 4138965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 4148965ea79SLois Curfman McInnes values = rvalues + i*nmax; 4158965ea79SLois Curfman McInnes for (j=0; j<lens[i]; j++) { 4168965ea79SLois Curfman McInnes lrows[count++] = values[j] - base; 4178965ea79SLois Curfman McInnes } 4188965ea79SLois Curfman McInnes } 419606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 42074ed9c26SBarry Smith ierr = PetscFree2(lens,source);CHKERRQ(ierr); 421606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 42276ec1555SBarry Smith ierr = PetscFree(sizes);CHKERRQ(ierr); 4238965ea79SLois Curfman McInnes 42497b48c8fSBarry Smith /* fix right hand side if needed */ 42597b48c8fSBarry Smith if (x && b) { 42697b48c8fSBarry Smith ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr); 42797b48c8fSBarry Smith ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 42897b48c8fSBarry Smith for (i=0; i<slen; i++) { 42997b48c8fSBarry Smith bb[lrows[i]] = diag*xx[lrows[i]]; 43097b48c8fSBarry Smith } 43197b48c8fSBarry Smith ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr); 43297b48c8fSBarry Smith ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 43397b48c8fSBarry Smith } 43497b48c8fSBarry Smith 4358965ea79SLois Curfman McInnes /* actually zap the local rows */ 436b9679d65SBarry Smith ierr = MatZeroRows(l->A,slen,lrows,0.0,0,0);CHKERRQ(ierr); 437e2eb51b1SBarry Smith if (diag != 0.0) { 438b9679d65SBarry Smith Mat_SeqDense *ll = (Mat_SeqDense*)l->A->data; 439b9679d65SBarry Smith PetscInt m = ll->lda, i; 440b9679d65SBarry Smith 441b9679d65SBarry Smith for (i=0; i<slen; i++) { 442b9679d65SBarry Smith ll->v[lrows[i] + m*(A->cmap->rstart + lrows[i])] = diag; 443b9679d65SBarry Smith } 444b9679d65SBarry Smith } 445606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 4468965ea79SLois Curfman McInnes 4478965ea79SLois Curfman McInnes /* wait on sends */ 4488965ea79SLois Curfman McInnes if (nsends) { 449785e854fSJed Brown ierr = PetscMalloc1(nsends,&send_status);CHKERRQ(ierr); 450ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 451606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 4528965ea79SLois Curfman McInnes } 453606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 454606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 4553a40ed3dSBarry Smith PetscFunctionReturn(0); 4568965ea79SLois Curfman McInnes } 4578965ea79SLois Curfman McInnes 458cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec); 459cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec); 460cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec); 461cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec); 462cc2e6a90SBarry Smith 463dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4648965ea79SLois Curfman McInnes { 46539ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 466dfbe8321SBarry Smith PetscErrorCode ierr; 467c456f294SBarry Smith 4683a40ed3dSBarry Smith PetscFunctionBegin; 469ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 470ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 471cc2e6a90SBarry Smith ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy);CHKERRQ(ierr); 4723a40ed3dSBarry Smith PetscFunctionReturn(0); 4738965ea79SLois Curfman McInnes } 4748965ea79SLois Curfman McInnes 475dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4768965ea79SLois Curfman McInnes { 47739ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 478dfbe8321SBarry Smith PetscErrorCode ierr; 479c456f294SBarry Smith 4803a40ed3dSBarry Smith PetscFunctionBegin; 481ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 482ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 483cc2e6a90SBarry Smith ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr); 4843a40ed3dSBarry Smith PetscFunctionReturn(0); 4858965ea79SLois Curfman McInnes } 4868965ea79SLois Curfman McInnes 487dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 488096963f5SLois Curfman McInnes { 489096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 490dfbe8321SBarry Smith PetscErrorCode ierr; 49187828ca2SBarry Smith PetscScalar zero = 0.0; 492096963f5SLois Curfman McInnes 4933a40ed3dSBarry Smith PetscFunctionBegin; 4942dcb1b2aSMatthew Knepley ierr = VecSet(yy,zero);CHKERRQ(ierr); 495cc2e6a90SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 496ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 497ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 4983a40ed3dSBarry Smith PetscFunctionReturn(0); 499096963f5SLois Curfman McInnes } 500096963f5SLois Curfman McInnes 501dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 502096963f5SLois Curfman McInnes { 503096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 504dfbe8321SBarry Smith PetscErrorCode ierr; 505096963f5SLois Curfman McInnes 5063a40ed3dSBarry Smith PetscFunctionBegin; 5073501a2bdSLois Curfman McInnes ierr = VecCopy(yy,zz);CHKERRQ(ierr); 508cc2e6a90SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 509ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 510ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 5113a40ed3dSBarry Smith PetscFunctionReturn(0); 512096963f5SLois Curfman McInnes } 513096963f5SLois Curfman McInnes 514dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5158965ea79SLois Curfman McInnes { 51639ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 517096963f5SLois Curfman McInnes Mat_SeqDense *aloc = (Mat_SeqDense*)a->A->data; 518dfbe8321SBarry Smith PetscErrorCode ierr; 519d0f46423SBarry Smith PetscInt len,i,n,m = A->rmap->n,radd; 52087828ca2SBarry Smith PetscScalar *x,zero = 0.0; 521ed3cc1f0SBarry Smith 5223a40ed3dSBarry Smith PetscFunctionBegin; 5232dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 5241ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 525096963f5SLois Curfman McInnes ierr = VecGetSize(v,&n);CHKERRQ(ierr); 526e32f2f54SBarry Smith if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 527d0f46423SBarry Smith len = PetscMin(a->A->rmap->n,a->A->cmap->n); 528d0f46423SBarry Smith radd = A->rmap->rstart*m; 52944cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 530096963f5SLois Curfman McInnes x[i] = aloc->v[radd + i*m + i]; 531096963f5SLois Curfman McInnes } 5321ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 5333a40ed3dSBarry Smith PetscFunctionReturn(0); 5348965ea79SLois Curfman McInnes } 5358965ea79SLois Curfman McInnes 536dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5378965ea79SLois Curfman McInnes { 5383501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 539dfbe8321SBarry Smith PetscErrorCode ierr; 540ed3cc1f0SBarry Smith 5413a40ed3dSBarry Smith PetscFunctionBegin; 542aa482453SBarry Smith #if defined(PETSC_USE_LOG) 543d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N); 5448965ea79SLois Curfman McInnes #endif 5458798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 5466bf464f9SBarry Smith ierr = MatDestroy(&mdn->A);CHKERRQ(ierr); 5476bf464f9SBarry Smith ierr = VecDestroy(&mdn->lvec);CHKERRQ(ierr); 5486bf464f9SBarry Smith ierr = VecScatterDestroy(&mdn->Mvctx);CHKERRQ(ierr); 54901b82886SBarry Smith 550bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 551dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 5528baccfbdSHong Zhang 5538baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr); 554d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL);CHKERRQ(ierr); 555d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL);CHKERRQ(ierr); 556d3042a70SBarry Smith 5578baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr); 5588baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 5598baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL);CHKERRQ(ierr); 5608baccfbdSHong Zhang #endif 561bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL);CHKERRQ(ierr); 562bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 563bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 564bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5658baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMult_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5668baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5678baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5683a40ed3dSBarry Smith PetscFunctionReturn(0); 5698965ea79SLois Curfman McInnes } 57039ddd567SLois Curfman McInnes 5716849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_Binary(Mat mat,PetscViewer viewer) 5728965ea79SLois Curfman McInnes { 57339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 574dfbe8321SBarry Smith PetscErrorCode ierr; 575aa05aa95SBarry Smith PetscViewerFormat format; 576aa05aa95SBarry Smith int fd; 577d0f46423SBarry Smith PetscInt header[4],mmax,N = mat->cmap->N,i,j,m,k; 578aa05aa95SBarry Smith PetscMPIInt rank,tag = ((PetscObject)viewer)->tag,size; 579578230a0SSatish Balay PetscScalar *work,*v,*vv; 580aa05aa95SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)mdn->A->data; 5817056b6fcSBarry Smith 5823a40ed3dSBarry Smith PetscFunctionBegin; 58339ddd567SLois Curfman McInnes if (mdn->size == 1) { 58439ddd567SLois Curfman McInnes ierr = MatView(mdn->A,viewer);CHKERRQ(ierr); 585aa05aa95SBarry Smith } else { 586aa05aa95SBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 587ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 588ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr); 589aa05aa95SBarry Smith 590aa05aa95SBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 591f4403165SShri Abhyankar if (format == PETSC_VIEWER_NATIVE) { 592aa05aa95SBarry Smith 593aa05aa95SBarry Smith if (!rank) { 594aa05aa95SBarry Smith /* store the matrix as a dense matrix */ 5950700a824SBarry Smith header[0] = MAT_FILE_CLASSID; 596d0f46423SBarry Smith header[1] = mat->rmap->N; 597aa05aa95SBarry Smith header[2] = N; 598aa05aa95SBarry Smith header[3] = MATRIX_BINARY_FORMAT_DENSE; 599aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 600aa05aa95SBarry Smith 601aa05aa95SBarry Smith /* get largest work array needed for transposing array */ 602d0f46423SBarry Smith mmax = mat->rmap->n; 603aa05aa95SBarry Smith for (i=1; i<size; i++) { 604d0f46423SBarry Smith mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]); 6058965ea79SLois Curfman McInnes } 606785e854fSJed Brown ierr = PetscMalloc1(mmax*N,&work);CHKERRQ(ierr); 607aa05aa95SBarry Smith 608aa05aa95SBarry Smith /* write out local array, by rows */ 609d0f46423SBarry Smith m = mat->rmap->n; 610aa05aa95SBarry Smith v = a->v; 611aa05aa95SBarry Smith for (j=0; j<N; j++) { 612aa05aa95SBarry Smith for (i=0; i<m; i++) { 613578230a0SSatish Balay work[j + i*N] = *v++; 614aa05aa95SBarry Smith } 615aa05aa95SBarry Smith } 616aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 617aa05aa95SBarry Smith /* get largest work array to receive messages from other processes, excludes process zero */ 618aa05aa95SBarry Smith mmax = 0; 619aa05aa95SBarry Smith for (i=1; i<size; i++) { 620d0f46423SBarry Smith mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]); 621aa05aa95SBarry Smith } 622785e854fSJed Brown ierr = PetscMalloc1(mmax*N,&vv);CHKERRQ(ierr); 623aa05aa95SBarry Smith for (k = 1; k < size; k++) { 624f8009846SMatthew Knepley v = vv; 625d0f46423SBarry Smith m = mat->rmap->range[k+1] - mat->rmap->range[k]; 626ce94432eSBarry Smith ierr = MPIULong_Recv(v,m*N,MPIU_SCALAR,k,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 627aa05aa95SBarry Smith 628aa05aa95SBarry Smith for (j = 0; j < N; j++) { 629aa05aa95SBarry Smith for (i = 0; i < m; i++) { 630578230a0SSatish Balay work[j + i*N] = *v++; 631aa05aa95SBarry Smith } 632aa05aa95SBarry Smith } 633aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 634aa05aa95SBarry Smith } 635aa05aa95SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 636578230a0SSatish Balay ierr = PetscFree(vv);CHKERRQ(ierr); 637aa05aa95SBarry Smith } else { 638ce94432eSBarry Smith ierr = MPIULong_Send(a->v,mat->rmap->n*mat->cmap->N,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 639aa05aa95SBarry Smith } 6406a9046bcSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"To store a parallel dense matrix you must first call PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE)"); 641aa05aa95SBarry Smith } 6423a40ed3dSBarry Smith PetscFunctionReturn(0); 6438965ea79SLois Curfman McInnes } 6448965ea79SLois Curfman McInnes 6457da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqDense(Mat,PetscViewer); 6469804daf3SBarry Smith #include <petscdraw.h> 6476849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 6488965ea79SLois Curfman McInnes { 64939ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 650dfbe8321SBarry Smith PetscErrorCode ierr; 6517da1fb6eSBarry Smith PetscMPIInt rank = mdn->rank; 65219fd82e9SBarry Smith PetscViewerType vtype; 653ace3abfcSBarry Smith PetscBool iascii,isdraw; 654b0a32e0cSBarry Smith PetscViewer sviewer; 655f3ef73ceSBarry Smith PetscViewerFormat format; 6568965ea79SLois Curfman McInnes 6573a40ed3dSBarry Smith PetscFunctionBegin; 658251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 659251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 66032077d6dSBarry Smith if (iascii) { 661b0a32e0cSBarry Smith ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr); 662b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 663456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6644e220ebcSLois Curfman McInnes MatInfo info; 665888f2ed8SSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 6661575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 6677b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr); 668b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6691575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 6705d00a290SHong Zhang ierr = VecScatterView(mdn->Mvctx,viewer);CHKERRQ(ierr); 6713a40ed3dSBarry Smith PetscFunctionReturn(0); 672fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6733a40ed3dSBarry Smith PetscFunctionReturn(0); 6748965ea79SLois Curfman McInnes } 675f1af5d2fSBarry Smith } else if (isdraw) { 676b0a32e0cSBarry Smith PetscDraw draw; 677ace3abfcSBarry Smith PetscBool isnull; 678f1af5d2fSBarry Smith 679b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 680b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 681f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 682f1af5d2fSBarry Smith } 68377ed5343SBarry Smith 6847da1fb6eSBarry Smith { 6858965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 6868965ea79SLois Curfman McInnes Mat A; 687d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz; 688ba8c8a56SBarry Smith PetscInt *cols; 689ba8c8a56SBarry Smith PetscScalar *vals; 6908965ea79SLois Curfman McInnes 691ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 6928965ea79SLois Curfman McInnes if (!rank) { 693f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 6943a40ed3dSBarry Smith } else { 695f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 6968965ea79SLois Curfman McInnes } 6977adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 698878740d9SKris Buschelman ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr); 6990298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr); 7003bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 7018965ea79SLois Curfman McInnes 70239ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 70339ddd567SLois Curfman McInnes but it's quick for now */ 70451022da4SBarry Smith A->insertmode = INSERT_VALUES; 7052205254eSKarl Rupp 7062205254eSKarl Rupp row = mat->rmap->rstart; 7072205254eSKarl Rupp m = mdn->A->rmap->n; 7088965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 709ba8c8a56SBarry Smith ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 710ba8c8a56SBarry Smith ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 711ba8c8a56SBarry Smith ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 71239ddd567SLois Curfman McInnes row++; 7138965ea79SLois Curfman McInnes } 7148965ea79SLois Curfman McInnes 7156d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7166d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7173f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 718b9b97703SBarry Smith if (!rank) { 7191a9d3c3cSBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 7207da1fb6eSBarry Smith ierr = MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr); 7218965ea79SLois Curfman McInnes } 7223f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 723b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 7246bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 7258965ea79SLois Curfman McInnes } 7263a40ed3dSBarry Smith PetscFunctionReturn(0); 7278965ea79SLois Curfman McInnes } 7288965ea79SLois Curfman McInnes 729dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 7308965ea79SLois Curfman McInnes { 731dfbe8321SBarry Smith PetscErrorCode ierr; 732ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw,issocket; 7338965ea79SLois Curfman McInnes 734433994e6SBarry Smith PetscFunctionBegin; 735251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 736251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 737251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 738251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 7390f5bd95cSBarry Smith 74032077d6dSBarry Smith if (iascii || issocket || isdraw) { 741f1af5d2fSBarry Smith ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 7420f5bd95cSBarry Smith } else if (isbinary) { 7433a40ed3dSBarry Smith ierr = MatView_MPIDense_Binary(mat,viewer);CHKERRQ(ierr); 74411aeaf0aSBarry Smith } 7453a40ed3dSBarry Smith PetscFunctionReturn(0); 7468965ea79SLois Curfman McInnes } 7478965ea79SLois Curfman McInnes 748dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 7498965ea79SLois Curfman McInnes { 7503501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7513501a2bdSLois Curfman McInnes Mat mdn = mat->A; 752dfbe8321SBarry Smith PetscErrorCode ierr; 753329f5518SBarry Smith PetscReal isend[5],irecv[5]; 7548965ea79SLois Curfman McInnes 7553a40ed3dSBarry Smith PetscFunctionBegin; 7564e220ebcSLois Curfman McInnes info->block_size = 1.0; 7572205254eSKarl Rupp 7584e220ebcSLois Curfman McInnes ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr); 7592205254eSKarl Rupp 7604e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 7614e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 7628965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7634e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7644e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7654e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7664e220ebcSLois Curfman McInnes info->memory = isend[3]; 7674e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7688965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 769b2566f29SBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 7702205254eSKarl Rupp 7714e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7724e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7734e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7744e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7754e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7768965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 777b2566f29SBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 7782205254eSKarl Rupp 7794e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7804e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7814e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7824e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7834e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7848965ea79SLois Curfman McInnes } 7854e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 7864e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 7874e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 7883a40ed3dSBarry Smith PetscFunctionReturn(0); 7898965ea79SLois Curfman McInnes } 7908965ea79SLois Curfman McInnes 791ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg) 7928965ea79SLois Curfman McInnes { 79339ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 794dfbe8321SBarry Smith PetscErrorCode ierr; 7958965ea79SLois Curfman McInnes 7963a40ed3dSBarry Smith PetscFunctionBegin; 79712c028f9SKris Buschelman switch (op) { 798512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 79912c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 80012c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 80143674050SBarry Smith MatCheckPreallocated(A,1); 8024e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 80312c028f9SKris Buschelman break; 80412c028f9SKris Buschelman case MAT_ROW_ORIENTED: 80543674050SBarry Smith MatCheckPreallocated(A,1); 8064e0d8c25SBarry Smith a->roworiented = flg; 8074e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 80812c028f9SKris Buschelman break; 8094e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 81013fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 81112c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 812290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 81312c028f9SKris Buschelman break; 81412c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 8154e0d8c25SBarry Smith a->donotstash = flg; 81612c028f9SKris Buschelman break; 81777e54ba9SKris Buschelman case MAT_SYMMETRIC: 81877e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 8199a4540c5SBarry Smith case MAT_HERMITIAN: 8209a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 821600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 822290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 82377e54ba9SKris Buschelman break; 82412c028f9SKris Buschelman default: 825e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 8263a40ed3dSBarry Smith } 8273a40ed3dSBarry Smith PetscFunctionReturn(0); 8288965ea79SLois Curfman McInnes } 8298965ea79SLois Curfman McInnes 8308965ea79SLois Curfman McInnes 831dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 8325b2fa520SLois Curfman McInnes { 8335b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 8345b2fa520SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 835*bca11509SBarry Smith const PetscScalar *l,*r; 836*bca11509SBarry Smith PetscScalar x,*v; 837dfbe8321SBarry Smith PetscErrorCode ierr; 838d0f46423SBarry Smith PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n; 8395b2fa520SLois Curfman McInnes 8405b2fa520SLois Curfman McInnes PetscFunctionBegin; 84172d926a5SLois Curfman McInnes ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr); 8425b2fa520SLois Curfman McInnes if (ll) { 84372d926a5SLois Curfman McInnes ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr); 844e32f2f54SBarry Smith if (s2a != s2) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %d != %d.", s2a, s2); 845*bca11509SBarry Smith ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr); 8465b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 8475b2fa520SLois Curfman McInnes x = l[i]; 8485b2fa520SLois Curfman McInnes v = mat->v + i; 8495b2fa520SLois Curfman McInnes for (j=0; j<n; j++) { (*v) *= x; v+= m;} 8505b2fa520SLois Curfman McInnes } 851*bca11509SBarry Smith ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr); 852efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 8535b2fa520SLois Curfman McInnes } 8545b2fa520SLois Curfman McInnes if (rr) { 855175be7b4SMatthew Knepley ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr); 856e32f2f54SBarry Smith if (s3a != s3) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3); 857ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 858ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 859*bca11509SBarry Smith ierr = VecGetArrayRead(mdn->lvec,&r);CHKERRQ(ierr); 8605b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 8615b2fa520SLois Curfman McInnes x = r[i]; 8625b2fa520SLois Curfman McInnes v = mat->v + i*m; 8632205254eSKarl Rupp for (j=0; j<m; j++) (*v++) *= x; 8645b2fa520SLois Curfman McInnes } 865*bca11509SBarry Smith ierr = VecRestoreArrayRead(mdn->lvec,&r);CHKERRQ(ierr); 866efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 8675b2fa520SLois Curfman McInnes } 8685b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8695b2fa520SLois Curfman McInnes } 8705b2fa520SLois Curfman McInnes 871dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 872096963f5SLois Curfman McInnes { 8733501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 8743501a2bdSLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 875dfbe8321SBarry Smith PetscErrorCode ierr; 87613f74950SBarry Smith PetscInt i,j; 877329f5518SBarry Smith PetscReal sum = 0.0; 87887828ca2SBarry Smith PetscScalar *v = mat->v; 8793501a2bdSLois Curfman McInnes 8803a40ed3dSBarry Smith PetscFunctionBegin; 8813501a2bdSLois Curfman McInnes if (mdn->size == 1) { 882064f8208SBarry Smith ierr = MatNorm(mdn->A,type,nrm);CHKERRQ(ierr); 8833501a2bdSLois Curfman McInnes } else { 8843501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 885d0f46423SBarry Smith for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) { 886329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 8873501a2bdSLois Curfman McInnes } 888b2566f29SBarry Smith ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 8898f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 890dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr); 8913a40ed3dSBarry Smith } else if (type == NORM_1) { 892329f5518SBarry Smith PetscReal *tmp,*tmp2; 893dcca6d9dSJed Brown ierr = PetscMalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2);CHKERRQ(ierr); 89474ed9c26SBarry Smith ierr = PetscMemzero(tmp,A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 89574ed9c26SBarry Smith ierr = PetscMemzero(tmp2,A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 896064f8208SBarry Smith *nrm = 0.0; 8973501a2bdSLois Curfman McInnes v = mat->v; 898d0f46423SBarry Smith for (j=0; j<mdn->A->cmap->n; j++) { 899d0f46423SBarry Smith for (i=0; i<mdn->A->rmap->n; i++) { 90067e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 9013501a2bdSLois Curfman McInnes } 9023501a2bdSLois Curfman McInnes } 903b2566f29SBarry Smith ierr = MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 904d0f46423SBarry Smith for (j=0; j<A->cmap->N; j++) { 905064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 9063501a2bdSLois Curfman McInnes } 9078627564fSBarry Smith ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr); 908d0f46423SBarry Smith ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr); 9093a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 910329f5518SBarry Smith PetscReal ntemp; 9113501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr); 912b2566f29SBarry Smith ierr = MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 913ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm"); 9143501a2bdSLois Curfman McInnes } 9153a40ed3dSBarry Smith PetscFunctionReturn(0); 9163501a2bdSLois Curfman McInnes } 9173501a2bdSLois Curfman McInnes 918fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 9193501a2bdSLois Curfman McInnes { 9203501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 9213501a2bdSLois Curfman McInnes Mat_SeqDense *Aloc = (Mat_SeqDense*)a->A->data; 9223501a2bdSLois Curfman McInnes Mat B; 923d0f46423SBarry Smith PetscInt M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart; 9246849ba73SBarry Smith PetscErrorCode ierr; 92513f74950SBarry Smith PetscInt j,i; 92687828ca2SBarry Smith PetscScalar *v; 9273501a2bdSLois Curfman McInnes 9283a40ed3dSBarry Smith PetscFunctionBegin; 929cf37664fSBarry Smith if (reuse == MAT_INPLACE_MATRIX && M != N) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Supports square matrix only in-place"); 930cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 931ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 932d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 9337adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 9340298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(B,NULL);CHKERRQ(ierr); 935fc4dec0aSBarry Smith } else { 936fc4dec0aSBarry Smith B = *matout; 937fc4dec0aSBarry Smith } 9383501a2bdSLois Curfman McInnes 939d0f46423SBarry Smith m = a->A->rmap->n; n = a->A->cmap->n; v = Aloc->v; 940785e854fSJed Brown ierr = PetscMalloc1(m,&rwork);CHKERRQ(ierr); 9413501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 9421acff37aSSatish Balay for (j=0; j<n; j++) { 9433501a2bdSLois Curfman McInnes ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr); 9443501a2bdSLois Curfman McInnes v += m; 9453501a2bdSLois Curfman McInnes } 946606d414cSSatish Balay ierr = PetscFree(rwork);CHKERRQ(ierr); 9476d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9486d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 949cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 9503501a2bdSLois Curfman McInnes *matout = B; 9513501a2bdSLois Curfman McInnes } else { 95228be2f97SBarry Smith ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr); 9533501a2bdSLois Curfman McInnes } 9543a40ed3dSBarry Smith PetscFunctionReturn(0); 955096963f5SLois Curfman McInnes } 956096963f5SLois Curfman McInnes 95744cd7ae7SLois Curfman McInnes 9586849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*); 959d84338a6SBarry Smith extern PetscErrorCode MatScale_MPIDense(Mat,PetscScalar); 9608965ea79SLois Curfman McInnes 9614994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A) 962273d9f13SBarry Smith { 963dfbe8321SBarry Smith PetscErrorCode ierr; 964273d9f13SBarry Smith 965273d9f13SBarry Smith PetscFunctionBegin; 966273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr); 967273d9f13SBarry Smith PetscFunctionReturn(0); 968273d9f13SBarry Smith } 969273d9f13SBarry Smith 970488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 971488007eeSBarry Smith { 972488007eeSBarry Smith PetscErrorCode ierr; 973488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data; 974488007eeSBarry Smith 975488007eeSBarry Smith PetscFunctionBegin; 976488007eeSBarry Smith ierr = MatAXPY(A->A,alpha,B->A,str);CHKERRQ(ierr); 977a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 978488007eeSBarry Smith PetscFunctionReturn(0); 979488007eeSBarry Smith } 980488007eeSBarry Smith 9817087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat) 982ba337c44SJed Brown { 983ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 984ba337c44SJed Brown PetscErrorCode ierr; 985ba337c44SJed Brown 986ba337c44SJed Brown PetscFunctionBegin; 987ba337c44SJed Brown ierr = MatConjugate(a->A);CHKERRQ(ierr); 988ba337c44SJed Brown PetscFunctionReturn(0); 989ba337c44SJed Brown } 990ba337c44SJed Brown 991ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A) 992ba337c44SJed Brown { 993ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 994ba337c44SJed Brown PetscErrorCode ierr; 995ba337c44SJed Brown 996ba337c44SJed Brown PetscFunctionBegin; 997ba337c44SJed Brown ierr = MatRealPart(a->A);CHKERRQ(ierr); 998ba337c44SJed Brown PetscFunctionReturn(0); 999ba337c44SJed Brown } 1000ba337c44SJed Brown 1001ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 1002ba337c44SJed Brown { 1003ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1004ba337c44SJed Brown PetscErrorCode ierr; 1005ba337c44SJed Brown 1006ba337c44SJed Brown PetscFunctionBegin; 1007ba337c44SJed Brown ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 1008ba337c44SJed Brown PetscFunctionReturn(0); 1009ba337c44SJed Brown } 1010ba337c44SJed Brown 10110716a85fSBarry Smith extern PetscErrorCode MatGetColumnNorms_SeqDense(Mat,NormType,PetscReal*); 10120716a85fSBarry Smith PetscErrorCode MatGetColumnNorms_MPIDense(Mat A,NormType type,PetscReal *norms) 10130716a85fSBarry Smith { 10140716a85fSBarry Smith PetscErrorCode ierr; 10150716a85fSBarry Smith PetscInt i,n; 10160716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*) A->data; 10170716a85fSBarry Smith PetscReal *work; 10180716a85fSBarry Smith 10190716a85fSBarry Smith PetscFunctionBegin; 10200298fd71SBarry Smith ierr = MatGetSize(A,NULL,&n);CHKERRQ(ierr); 1021785e854fSJed Brown ierr = PetscMalloc1(n,&work);CHKERRQ(ierr); 10220716a85fSBarry Smith ierr = MatGetColumnNorms_SeqDense(a->A,type,work);CHKERRQ(ierr); 10230716a85fSBarry Smith if (type == NORM_2) { 10240716a85fSBarry Smith for (i=0; i<n; i++) work[i] *= work[i]; 10250716a85fSBarry Smith } 10260716a85fSBarry Smith if (type == NORM_INFINITY) { 1027b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_MAX,A->hdr.comm);CHKERRQ(ierr); 10280716a85fSBarry Smith } else { 1029b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_SUM,A->hdr.comm);CHKERRQ(ierr); 10300716a85fSBarry Smith } 10310716a85fSBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 10320716a85fSBarry Smith if (type == NORM_2) { 10338f1a2a5eSBarry Smith for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]); 10340716a85fSBarry Smith } 10350716a85fSBarry Smith PetscFunctionReturn(0); 10360716a85fSBarry Smith } 10370716a85fSBarry Smith 103873a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx) 103973a71a0fSBarry Smith { 104073a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense*)x->data; 104173a71a0fSBarry Smith PetscErrorCode ierr; 104273a71a0fSBarry Smith PetscScalar *a; 104373a71a0fSBarry Smith PetscInt m,n,i; 104473a71a0fSBarry Smith 104573a71a0fSBarry Smith PetscFunctionBegin; 104673a71a0fSBarry Smith ierr = MatGetSize(d->A,&m,&n);CHKERRQ(ierr); 10478c778c55SBarry Smith ierr = MatDenseGetArray(d->A,&a);CHKERRQ(ierr); 104873a71a0fSBarry Smith for (i=0; i<m*n; i++) { 104973a71a0fSBarry Smith ierr = PetscRandomGetValue(rctx,a+i);CHKERRQ(ierr); 105073a71a0fSBarry Smith } 10518c778c55SBarry Smith ierr = MatDenseRestoreArray(d->A,&a);CHKERRQ(ierr); 105273a71a0fSBarry Smith PetscFunctionReturn(0); 105373a71a0fSBarry Smith } 105473a71a0fSBarry Smith 1055fd4e9aacSBarry Smith extern PetscErrorCode MatMatMultNumeric_MPIDense(Mat A,Mat,Mat); 1056fd4e9aacSBarry Smith 10573b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool *missing,PetscInt *d) 10583b49f96aSBarry Smith { 10593b49f96aSBarry Smith PetscFunctionBegin; 10603b49f96aSBarry Smith *missing = PETSC_FALSE; 10613b49f96aSBarry Smith PetscFunctionReturn(0); 10623b49f96aSBarry Smith } 10633b49f96aSBarry Smith 10648965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 106509dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense, 106609dc0095SBarry Smith MatGetRow_MPIDense, 106709dc0095SBarry Smith MatRestoreRow_MPIDense, 106809dc0095SBarry Smith MatMult_MPIDense, 106997304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 10707c922b88SBarry Smith MatMultTranspose_MPIDense, 10717c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 10728965ea79SLois Curfman McInnes 0, 107309dc0095SBarry Smith 0, 107409dc0095SBarry Smith 0, 107597304618SKris Buschelman /* 10*/ 0, 107609dc0095SBarry Smith 0, 107709dc0095SBarry Smith 0, 107809dc0095SBarry Smith 0, 107909dc0095SBarry Smith MatTranspose_MPIDense, 108097304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 10816e4ee0c6SHong Zhang MatEqual_MPIDense, 108209dc0095SBarry Smith MatGetDiagonal_MPIDense, 10835b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 108409dc0095SBarry Smith MatNorm_MPIDense, 108597304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 108609dc0095SBarry Smith MatAssemblyEnd_MPIDense, 108709dc0095SBarry Smith MatSetOption_MPIDense, 108809dc0095SBarry Smith MatZeroEntries_MPIDense, 1089d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1090919b68f7SBarry Smith 0, 109101b82886SBarry Smith 0, 109201b82886SBarry Smith 0, 109301b82886SBarry Smith 0, 10944994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1095273d9f13SBarry Smith 0, 109609dc0095SBarry Smith 0, 1097c56a70eeSBarry Smith MatGetDiagonalBlock_MPIDense, 10988c778c55SBarry Smith 0, 1099d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 110009dc0095SBarry Smith 0, 110109dc0095SBarry Smith 0, 110209dc0095SBarry Smith 0, 110309dc0095SBarry Smith 0, 1104d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 11057dae84e0SHong Zhang MatCreateSubMatrices_MPIDense, 110609dc0095SBarry Smith 0, 110709dc0095SBarry Smith MatGetValues_MPIDense, 110809dc0095SBarry Smith 0, 1109d519adbfSMatthew Knepley /* 44*/ 0, 111009dc0095SBarry Smith MatScale_MPIDense, 11117d68702bSBarry Smith MatShift_Basic, 111209dc0095SBarry Smith 0, 111309dc0095SBarry Smith 0, 111473a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 111509dc0095SBarry Smith 0, 111609dc0095SBarry Smith 0, 111709dc0095SBarry Smith 0, 111809dc0095SBarry Smith 0, 1119d519adbfSMatthew Knepley /* 54*/ 0, 112009dc0095SBarry Smith 0, 112109dc0095SBarry Smith 0, 112209dc0095SBarry Smith 0, 112309dc0095SBarry Smith 0, 11247dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPIDense, 1125b9b97703SBarry Smith MatDestroy_MPIDense, 1126b9b97703SBarry Smith MatView_MPIDense, 1127357abbc8SBarry Smith 0, 112897304618SKris Buschelman 0, 1129d519adbfSMatthew Knepley /* 64*/ 0, 113097304618SKris Buschelman 0, 113197304618SKris Buschelman 0, 113297304618SKris Buschelman 0, 113397304618SKris Buschelman 0, 1134d519adbfSMatthew Knepley /* 69*/ 0, 113597304618SKris Buschelman 0, 113697304618SKris Buschelman 0, 113797304618SKris Buschelman 0, 113897304618SKris Buschelman 0, 1139d519adbfSMatthew Knepley /* 74*/ 0, 114097304618SKris Buschelman 0, 114197304618SKris Buschelman 0, 114297304618SKris Buschelman 0, 114397304618SKris Buschelman 0, 1144d519adbfSMatthew Knepley /* 79*/ 0, 114597304618SKris Buschelman 0, 114697304618SKris Buschelman 0, 114797304618SKris Buschelman 0, 11485bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1149865e5f61SKris Buschelman 0, 1150865e5f61SKris Buschelman 0, 1151865e5f61SKris Buschelman 0, 1152865e5f61SKris Buschelman 0, 1153865e5f61SKris Buschelman 0, 11549775878aSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1155320f2790SHong Zhang /* 89*/ MatMatMult_MPIDense_MPIDense, 1156320f2790SHong Zhang MatMatMultSymbolic_MPIDense_MPIDense, 11579775878aSHong Zhang #else 11589775878aSHong Zhang /* 89*/ 0, 1159865e5f61SKris Buschelman 0, 11609775878aSHong Zhang #endif 1161fd4e9aacSBarry Smith MatMatMultNumeric_MPIDense, 11622fbe02b9SBarry Smith 0, 1163ba337c44SJed Brown 0, 1164d519adbfSMatthew Knepley /* 94*/ 0, 1165865e5f61SKris Buschelman 0, 1166865e5f61SKris Buschelman 0, 1167ba337c44SJed Brown 0, 1168ba337c44SJed Brown 0, 1169ba337c44SJed Brown /* 99*/ 0, 1170ba337c44SJed Brown 0, 1171ba337c44SJed Brown 0, 1172ba337c44SJed Brown MatConjugate_MPIDense, 1173ba337c44SJed Brown 0, 1174ba337c44SJed Brown /*104*/ 0, 1175ba337c44SJed Brown MatRealPart_MPIDense, 1176ba337c44SJed Brown MatImaginaryPart_MPIDense, 117786d161a7SShri Abhyankar 0, 117886d161a7SShri Abhyankar 0, 117986d161a7SShri Abhyankar /*109*/ 0, 118086d161a7SShri Abhyankar 0, 118186d161a7SShri Abhyankar 0, 118286d161a7SShri Abhyankar 0, 11833b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 118486d161a7SShri Abhyankar /*114*/ 0, 118586d161a7SShri Abhyankar 0, 118686d161a7SShri Abhyankar 0, 118786d161a7SShri Abhyankar 0, 118886d161a7SShri Abhyankar 0, 118986d161a7SShri Abhyankar /*119*/ 0, 119086d161a7SShri Abhyankar 0, 119186d161a7SShri Abhyankar 0, 11920716a85fSBarry Smith 0, 11930716a85fSBarry Smith 0, 11940716a85fSBarry Smith /*124*/ 0, 11953964eb88SJed Brown MatGetColumnNorms_MPIDense, 11963964eb88SJed Brown 0, 11973964eb88SJed Brown 0, 11983964eb88SJed Brown 0, 11993964eb88SJed Brown /*129*/ 0, 1200cb20be35SHong Zhang MatTransposeMatMult_MPIDense_MPIDense, 1201cb20be35SHong Zhang MatTransposeMatMultSymbolic_MPIDense_MPIDense, 1202cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 12033964eb88SJed Brown 0, 12043964eb88SJed Brown /*134*/ 0, 12053964eb88SJed Brown 0, 12063964eb88SJed Brown 0, 12073964eb88SJed Brown 0, 12083964eb88SJed Brown 0, 12093964eb88SJed Brown /*139*/ 0, 1210f9426fe0SMark Adams 0, 12113964eb88SJed Brown 0 1212ba337c44SJed Brown }; 12138965ea79SLois Curfman McInnes 12147087cfbeSBarry Smith PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1215a23d5eceSKris Buschelman { 1216a23d5eceSKris Buschelman Mat_MPIDense *a; 1217dfbe8321SBarry Smith PetscErrorCode ierr; 1218a23d5eceSKris Buschelman 1219a23d5eceSKris Buschelman PetscFunctionBegin; 1220a23d5eceSKris Buschelman mat->preallocated = PETSC_TRUE; 1221a23d5eceSKris Buschelman /* Note: For now, when data is specified above, this assumes the user correctly 1222a23d5eceSKris Buschelman allocates the local dense storage space. We should add error checking. */ 1223a23d5eceSKris Buschelman 1224a23d5eceSKris Buschelman a = (Mat_MPIDense*)mat->data; 122534ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr); 122634ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr); 122734ef9618SShri Abhyankar a->nvec = mat->cmap->n; 122834ef9618SShri Abhyankar 1229f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr); 1230d0f46423SBarry Smith ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr); 12315c5985e7SKris Buschelman ierr = MatSetType(a->A,MATSEQDENSE);CHKERRQ(ierr); 12325c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr); 12333bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 1234a23d5eceSKris Buschelman PetscFunctionReturn(0); 1235a23d5eceSKris Buschelman } 1236a23d5eceSKris Buschelman 123765b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1238cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 12398baccfbdSHong Zhang { 12408ea901baSHong Zhang Mat mat_elemental; 12418ea901baSHong Zhang PetscErrorCode ierr; 124232d7a744SHong Zhang PetscScalar *v; 124332d7a744SHong Zhang PetscInt m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols; 12448ea901baSHong Zhang 12458baccfbdSHong Zhang PetscFunctionBegin; 1246378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1247378336b6SHong Zhang mat_elemental = *newmat; 1248378336b6SHong Zhang ierr = MatZeroEntries(*newmat);CHKERRQ(ierr); 1249378336b6SHong Zhang } else { 1250378336b6SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr); 1251378336b6SHong Zhang ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 1252378336b6SHong Zhang ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr); 1253378336b6SHong Zhang ierr = MatSetUp(mat_elemental);CHKERRQ(ierr); 125432d7a744SHong Zhang ierr = MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 1255378336b6SHong Zhang } 1256378336b6SHong Zhang 125732d7a744SHong Zhang ierr = PetscMalloc2(m,&rows,N,&cols);CHKERRQ(ierr); 125832d7a744SHong Zhang for (i=0; i<N; i++) cols[i] = i; 125932d7a744SHong Zhang for (i=0; i<m; i++) rows[i] = rstart + i; 12608ea901baSHong Zhang 12618ea901baSHong Zhang /* PETSc-Elemental interaface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 126232d7a744SHong Zhang ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr); 126332d7a744SHong Zhang ierr = MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES);CHKERRQ(ierr); 12648ea901baSHong Zhang ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 12658ea901baSHong Zhang ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 126632d7a744SHong Zhang ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr); 126732d7a744SHong Zhang ierr = PetscFree2(rows,cols);CHKERRQ(ierr); 12688ea901baSHong Zhang 1269511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 127028be2f97SBarry Smith ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr); 12718ea901baSHong Zhang } else { 12728ea901baSHong Zhang *newmat = mat_elemental; 12738ea901baSHong Zhang } 12748baccfbdSHong Zhang PetscFunctionReturn(0); 12758baccfbdSHong Zhang } 127665b80a83SHong Zhang #endif 12778baccfbdSHong Zhang 12788cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat) 1279273d9f13SBarry Smith { 1280273d9f13SBarry Smith Mat_MPIDense *a; 1281dfbe8321SBarry Smith PetscErrorCode ierr; 1282273d9f13SBarry Smith 1283273d9f13SBarry Smith PetscFunctionBegin; 1284b00a9115SJed Brown ierr = PetscNewLog(mat,&a);CHKERRQ(ierr); 1285b0a32e0cSBarry Smith mat->data = (void*)a; 1286273d9f13SBarry Smith ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1287273d9f13SBarry Smith 1288273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1289ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&a->rank);CHKERRQ(ierr); 1290ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&a->size);CHKERRQ(ierr); 1291273d9f13SBarry Smith 1292273d9f13SBarry Smith /* build cache for off array entries formed */ 1293273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 12942205254eSKarl Rupp 1295ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash);CHKERRQ(ierr); 1296273d9f13SBarry Smith 1297273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1298273d9f13SBarry Smith a->lvec = 0; 1299273d9f13SBarry Smith a->Mvctx = 0; 1300273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1301273d9f13SBarry Smith 1302bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense);CHKERRQ(ierr); 1303d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",MatDensePlaceArray_MPIDense);CHKERRQ(ierr); 1304d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",MatDenseResetArray_MPIDense);CHKERRQ(ierr); 1305bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense);CHKERRQ(ierr); 13068baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 13078baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental);CHKERRQ(ierr); 13088baccfbdSHong Zhang #endif 1309bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr); 1310bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",MatMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr); 1311bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 1312bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 13138949adfdSHong Zhang 13148949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMult_mpiaij_mpidense_C",MatTransposeMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr); 13158949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",MatTransposeMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 13168949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",MatTransposeMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 131738aed534SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr); 1318273d9f13SBarry Smith PetscFunctionReturn(0); 1319273d9f13SBarry Smith } 1320273d9f13SBarry Smith 1321209238afSKris Buschelman /*MC 1322002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1323209238afSKris Buschelman 1324209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 1325209238afSKris Buschelman and MATMPIDENSE otherwise. 1326209238afSKris Buschelman 1327209238afSKris Buschelman Options Database Keys: 1328209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 1329209238afSKris Buschelman 1330209238afSKris Buschelman Level: beginner 1331209238afSKris Buschelman 133201b82886SBarry Smith 1333209238afSKris Buschelman .seealso: MatCreateMPIDense,MATSEQDENSE,MATMPIDENSE 1334209238afSKris Buschelman M*/ 1335209238afSKris Buschelman 1336273d9f13SBarry Smith /*@C 1337273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1338273d9f13SBarry Smith 1339273d9f13SBarry Smith Not collective 1340273d9f13SBarry Smith 1341273d9f13SBarry Smith Input Parameters: 13421c4f3114SJed Brown . B - the matrix 13430298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL for PETSc 1344273d9f13SBarry Smith to control all matrix memory allocation. 1345273d9f13SBarry Smith 1346273d9f13SBarry Smith Notes: 1347273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 1348273d9f13SBarry Smith storage by columns. 1349273d9f13SBarry Smith 1350273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1351273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 13520298fd71SBarry Smith set data=NULL. 1353273d9f13SBarry Smith 1354273d9f13SBarry Smith Level: intermediate 1355273d9f13SBarry Smith 1356273d9f13SBarry Smith .keywords: matrix,dense, parallel 1357273d9f13SBarry Smith 1358273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 1359273d9f13SBarry Smith @*/ 13601c4f3114SJed Brown PetscErrorCode MatMPIDenseSetPreallocation(Mat B,PetscScalar *data) 1361273d9f13SBarry Smith { 13624ac538c5SBarry Smith PetscErrorCode ierr; 1363273d9f13SBarry Smith 1364273d9f13SBarry Smith PetscFunctionBegin; 13651c4f3114SJed Brown ierr = PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data));CHKERRQ(ierr); 1366273d9f13SBarry Smith PetscFunctionReturn(0); 1367273d9f13SBarry Smith } 1368273d9f13SBarry Smith 1369d3042a70SBarry Smith /*@ 1370d3042a70SBarry Smith MatDensePlaceArray - Allows one to replace the array in a dense array with an 1371d3042a70SBarry Smith array provided by the user. This is useful to avoid copying an array 1372d3042a70SBarry Smith into a matrix 1373d3042a70SBarry Smith 1374d3042a70SBarry Smith Not Collective 1375d3042a70SBarry Smith 1376d3042a70SBarry Smith Input Parameters: 1377d3042a70SBarry Smith + mat - the matrix 1378d3042a70SBarry Smith - array - the array in column major order 1379d3042a70SBarry Smith 1380d3042a70SBarry Smith Notes: 1381d3042a70SBarry Smith You can return to the original array with a call to MatDenseResetArray(). The user is responsible for freeing this array; it will not be 1382d3042a70SBarry Smith freed when the matrix is destroyed. 1383d3042a70SBarry Smith 1384d3042a70SBarry Smith Level: developer 1385d3042a70SBarry Smith 1386d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDenseResetArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 1387d3042a70SBarry Smith 1388d3042a70SBarry Smith @*/ 1389d3042a70SBarry Smith PetscErrorCode MatDensePlaceArray(Mat mat,const PetscScalar array[]) 1390d3042a70SBarry Smith { 1391d3042a70SBarry Smith PetscErrorCode ierr; 1392d3042a70SBarry Smith PetscFunctionBegin; 1393d3042a70SBarry Smith ierr = PetscUseMethod(mat,"MatDensePlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 1394d3042a70SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 1395d3042a70SBarry Smith PetscFunctionReturn(0); 1396d3042a70SBarry Smith } 1397d3042a70SBarry Smith 1398d3042a70SBarry Smith /*@ 1399d3042a70SBarry Smith MatDenseResetArray - Resets the matrix array to that it previously had before the call to MatDensePlaceArray() 1400d3042a70SBarry Smith 1401d3042a70SBarry Smith Not Collective 1402d3042a70SBarry Smith 1403d3042a70SBarry Smith Input Parameters: 1404d3042a70SBarry Smith . mat - the matrix 1405d3042a70SBarry Smith 1406d3042a70SBarry Smith Notes: 1407d3042a70SBarry Smith You can only call this after a call to MatDensePlaceArray() 1408d3042a70SBarry Smith 1409d3042a70SBarry Smith Level: developer 1410d3042a70SBarry Smith 1411d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDensePlaceArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 1412d3042a70SBarry Smith 1413d3042a70SBarry Smith @*/ 1414d3042a70SBarry Smith PetscErrorCode MatDenseResetArray(Mat mat) 1415d3042a70SBarry Smith { 1416d3042a70SBarry Smith PetscErrorCode ierr; 1417d3042a70SBarry Smith PetscFunctionBegin; 1418d3042a70SBarry Smith ierr = PetscUseMethod(mat,"MatDenseResetArray_C",(Mat),(mat));CHKERRQ(ierr); 1419d3042a70SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 1420d3042a70SBarry Smith PetscFunctionReturn(0); 1421d3042a70SBarry Smith } 1422d3042a70SBarry Smith 14238965ea79SLois Curfman McInnes /*@C 142469b1f4b7SBarry Smith MatCreateDense - Creates a parallel matrix in dense format. 14258965ea79SLois Curfman McInnes 1426db81eaa0SLois Curfman McInnes Collective on MPI_Comm 1427db81eaa0SLois Curfman McInnes 14288965ea79SLois Curfman McInnes Input Parameters: 1429db81eaa0SLois Curfman McInnes + comm - MPI communicator 14308965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1431db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 14328965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 1433db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 14346cfe35ddSJose E. Roman - data - optional location of matrix data. Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc 1435dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 14368965ea79SLois Curfman McInnes 14378965ea79SLois Curfman McInnes Output Parameter: 1438477f1c0bSLois Curfman McInnes . A - the matrix 14398965ea79SLois Curfman McInnes 1440b259b22eSLois Curfman McInnes Notes: 144139ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 144239ddd567SLois Curfman McInnes storage by columns. 14438965ea79SLois Curfman McInnes 144418f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 144518f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 14466cfe35ddSJose E. Roman set data=NULL (PETSC_NULL_SCALAR for Fortran users). 144718f449edSLois Curfman McInnes 14488965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 14498965ea79SLois Curfman McInnes (possibly both). 14508965ea79SLois Curfman McInnes 1451027ccd11SLois Curfman McInnes Level: intermediate 1452027ccd11SLois Curfman McInnes 145339ddd567SLois Curfman McInnes .keywords: matrix,dense, parallel 14548965ea79SLois Curfman McInnes 145539ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 14568965ea79SLois Curfman McInnes @*/ 145769b1f4b7SBarry Smith PetscErrorCode MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 14588965ea79SLois Curfman McInnes { 14596849ba73SBarry Smith PetscErrorCode ierr; 146013f74950SBarry Smith PetscMPIInt size; 14618965ea79SLois Curfman McInnes 14623a40ed3dSBarry Smith PetscFunctionBegin; 1463f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 1464f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 1465273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1466273d9f13SBarry Smith if (size > 1) { 1467273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr); 1468273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr); 14696cfe35ddSJose E. Roman if (data) { /* user provided data array, so no need to assemble */ 14706cfe35ddSJose E. Roman ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr); 14716cfe35ddSJose E. Roman (*A)->assembled = PETSC_TRUE; 14726cfe35ddSJose E. Roman } 1473273d9f13SBarry Smith } else { 1474273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 1475273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 14768c469469SLois Curfman McInnes } 14773a40ed3dSBarry Smith PetscFunctionReturn(0); 14788965ea79SLois Curfman McInnes } 14798965ea79SLois Curfman McInnes 14806849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 14818965ea79SLois Curfman McInnes { 14828965ea79SLois Curfman McInnes Mat mat; 14833501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 1484dfbe8321SBarry Smith PetscErrorCode ierr; 14858965ea79SLois Curfman McInnes 14863a40ed3dSBarry Smith PetscFunctionBegin; 14878965ea79SLois Curfman McInnes *newmat = 0; 1488ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&mat);CHKERRQ(ierr); 1489d0f46423SBarry Smith ierr = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 14907adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr); 1491834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 1492e04c1aa4SHong Zhang ierr = PetscMemcpy(mat->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 14935aa7edbeSHong Zhang 1494d5f3da31SBarry Smith mat->factortype = A->factortype; 1495c456f294SBarry Smith mat->assembled = PETSC_TRUE; 1496273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 14978965ea79SLois Curfman McInnes 14988965ea79SLois Curfman McInnes a->size = oldmat->size; 14998965ea79SLois Curfman McInnes a->rank = oldmat->rank; 1500e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 1501b9b97703SBarry Smith a->nvec = oldmat->nvec; 15023782ba37SSatish Balay a->donotstash = oldmat->donotstash; 1503e04c1aa4SHong Zhang 15041e1e43feSBarry Smith ierr = PetscLayoutReference(A->rmap,&mat->rmap);CHKERRQ(ierr); 15051e1e43feSBarry Smith ierr = PetscLayoutReference(A->cmap,&mat->cmap);CHKERRQ(ierr); 15068965ea79SLois Curfman McInnes 1507329f5518SBarry Smith ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 15085609ef8eSBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 15093bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 151001b82886SBarry Smith 15118965ea79SLois Curfman McInnes *newmat = mat; 15123a40ed3dSBarry Smith PetscFunctionReturn(0); 15138965ea79SLois Curfman McInnes } 15148965ea79SLois Curfman McInnes 15159d36ed5fSBarry Smith PetscErrorCode MatLoad_MPIDense_DenseInFile(MPI_Comm comm,PetscInt fd,PetscInt M,PetscInt N,Mat newmat) 151686d161a7SShri Abhyankar { 151786d161a7SShri Abhyankar PetscErrorCode ierr; 151886d161a7SShri Abhyankar PetscMPIInt rank,size; 151974c13d95SBarry Smith const PetscInt *rowners; 152074c13d95SBarry Smith PetscInt i,m,n,nz,j,mMax; 152186d161a7SShri Abhyankar PetscScalar *array,*vals,*vals_ptr; 15229d36ed5fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)newmat->data; 152386d161a7SShri Abhyankar 152486d161a7SShri Abhyankar PetscFunctionBegin; 152586d161a7SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 152686d161a7SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 152786d161a7SShri Abhyankar 152874c13d95SBarry Smith /* determine ownership of rows and columns */ 152974c13d95SBarry Smith m = (newmat->rmap->n < 0) ? PETSC_DECIDE : newmat->rmap->n; 153074c13d95SBarry Smith n = (newmat->cmap->n < 0) ? PETSC_DECIDE : newmat->cmap->n; 153186d161a7SShri Abhyankar 153274c13d95SBarry Smith ierr = MatSetSizes(newmat,m,n,M,N);CHKERRQ(ierr); 15339d36ed5fSBarry Smith if (!a->A || !((Mat_SeqDense*)(a->A->data))->user_alloc) { 15340298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 15359d36ed5fSBarry Smith } 15368c778c55SBarry Smith ierr = MatDenseGetArray(newmat,&array);CHKERRQ(ierr); 153749467e7dSBarry Smith ierr = MatGetLocalSize(newmat,&m,NULL);CHKERRQ(ierr); 153874c13d95SBarry Smith ierr = MatGetOwnershipRanges(newmat,&rowners);CHKERRQ(ierr); 1539396e826eSBarry Smith ierr = MPI_Reduce(&m,&mMax,1,MPIU_INT,MPI_MAX,0,comm);CHKERRQ(ierr); 154086d161a7SShri Abhyankar if (!rank) { 15419d36ed5fSBarry Smith ierr = PetscMalloc1(mMax*N,&vals);CHKERRQ(ierr); 154286d161a7SShri Abhyankar 154386d161a7SShri Abhyankar /* read in my part of the matrix numerical values */ 154486d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,m*N,PETSC_SCALAR);CHKERRQ(ierr); 154586d161a7SShri Abhyankar 154686d161a7SShri Abhyankar /* insert into matrix-by row (this is why cannot directly read into array */ 154786d161a7SShri Abhyankar vals_ptr = vals; 154886d161a7SShri Abhyankar for (i=0; i<m; i++) { 154986d161a7SShri Abhyankar for (j=0; j<N; j++) { 155086d161a7SShri Abhyankar array[i + j*m] = *vals_ptr++; 155186d161a7SShri Abhyankar } 155286d161a7SShri Abhyankar } 155386d161a7SShri Abhyankar 155486d161a7SShri Abhyankar /* read in other processors and ship out */ 155586d161a7SShri Abhyankar for (i=1; i<size; i++) { 155686d161a7SShri Abhyankar nz = (rowners[i+1] - rowners[i])*N; 155786d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 1558a25532f0SBarry Smith ierr = MPIULong_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)(newmat))->tag,comm);CHKERRQ(ierr); 155986d161a7SShri Abhyankar } 156086d161a7SShri Abhyankar } else { 156186d161a7SShri Abhyankar /* receive numeric values */ 1562785e854fSJed Brown ierr = PetscMalloc1(m*N,&vals);CHKERRQ(ierr); 156386d161a7SShri Abhyankar 156486d161a7SShri Abhyankar /* receive message of values*/ 1565a25532f0SBarry Smith ierr = MPIULong_Recv(vals,m*N,MPIU_SCALAR,0,((PetscObject)(newmat))->tag,comm);CHKERRQ(ierr); 156686d161a7SShri Abhyankar 156786d161a7SShri Abhyankar /* insert into matrix-by row (this is why cannot directly read into array */ 156886d161a7SShri Abhyankar vals_ptr = vals; 156986d161a7SShri Abhyankar for (i=0; i<m; i++) { 157086d161a7SShri Abhyankar for (j=0; j<N; j++) { 157186d161a7SShri Abhyankar array[i + j*m] = *vals_ptr++; 157286d161a7SShri Abhyankar } 157386d161a7SShri Abhyankar } 157486d161a7SShri Abhyankar } 15758c778c55SBarry Smith ierr = MatDenseRestoreArray(newmat,&array);CHKERRQ(ierr); 157686d161a7SShri Abhyankar ierr = PetscFree(vals);CHKERRQ(ierr); 157786d161a7SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 157886d161a7SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 157986d161a7SShri Abhyankar PetscFunctionReturn(0); 158086d161a7SShri Abhyankar } 158186d161a7SShri Abhyankar 1582112444f4SShri Abhyankar PetscErrorCode MatLoad_MPIDense(Mat newmat,PetscViewer viewer) 158386d161a7SShri Abhyankar { 1584dfdea288SBarry Smith Mat_MPIDense *a; 158586d161a7SShri Abhyankar PetscScalar *vals,*svals; 1586ce94432eSBarry Smith MPI_Comm comm; 158786d161a7SShri Abhyankar MPI_Status status; 158849467e7dSBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*rowners,*sndcounts,m,n,maxnz; 158986d161a7SShri Abhyankar PetscInt header[4],*rowlengths = 0,M,N,*cols; 159049467e7dSBarry Smith PetscInt *ourlens,*procsnz = 0,jj,*mycols,*smycols; 15919d36ed5fSBarry Smith PetscInt i,nz,j,rstart,rend; 159286d161a7SShri Abhyankar int fd; 159386d161a7SShri Abhyankar PetscErrorCode ierr; 159486d161a7SShri Abhyankar 159586d161a7SShri Abhyankar PetscFunctionBegin; 1596c98fd787SBarry Smith /* force binary viewer to load .info file if it has not yet done so */ 1597c98fd787SBarry Smith ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 1598ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 159986d161a7SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 160086d161a7SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 160186d161a7SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 16025872f025SBarry Smith if (!rank) { 160386d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr); 160486d161a7SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 160586d161a7SShri Abhyankar } 160686d161a7SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 160786d161a7SShri Abhyankar M = header[1]; N = header[2]; nz = header[3]; 160886d161a7SShri Abhyankar 160986d161a7SShri Abhyankar /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */ 16109d36ed5fSBarry Smith if (newmat->rmap->N < 0) newmat->rmap->N = M; 16119d36ed5fSBarry Smith if (newmat->cmap->N < 0) newmat->cmap->N = N; 161286d161a7SShri Abhyankar 16139d36ed5fSBarry Smith if (newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",M,newmat->rmap->N); 16149d36ed5fSBarry Smith if (newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",N,newmat->cmap->N); 161586d161a7SShri Abhyankar 161686d161a7SShri Abhyankar /* 161786d161a7SShri Abhyankar Handle case where matrix is stored on disk as a dense matrix 161886d161a7SShri Abhyankar */ 161986d161a7SShri Abhyankar if (nz == MATRIX_BINARY_FORMAT_DENSE) { 16209d36ed5fSBarry Smith ierr = MatLoad_MPIDense_DenseInFile(comm,fd,M,N,newmat);CHKERRQ(ierr); 162186d161a7SShri Abhyankar PetscFunctionReturn(0); 162286d161a7SShri Abhyankar } 162386d161a7SShri Abhyankar 162486d161a7SShri Abhyankar /* determine ownership of all rows */ 16252205254eSKarl Rupp if (newmat->rmap->n < 0) { 16262205254eSKarl Rupp ierr = PetscMPIIntCast(M/size + ((M % size) > rank),&m);CHKERRQ(ierr); 16272205254eSKarl Rupp } else { 16282205254eSKarl Rupp ierr = PetscMPIIntCast(newmat->rmap->n,&m);CHKERRQ(ierr); 16292205254eSKarl Rupp } 163049467e7dSBarry Smith if (newmat->cmap->n < 0) { 163149467e7dSBarry Smith n = PETSC_DECIDE; 163249467e7dSBarry Smith } else { 163349467e7dSBarry Smith ierr = PetscMPIIntCast(newmat->cmap->n,&n);CHKERRQ(ierr); 163449467e7dSBarry Smith } 163549467e7dSBarry Smith 1636854ce69bSBarry Smith ierr = PetscMalloc1(size+2,&rowners);CHKERRQ(ierr); 163786d161a7SShri Abhyankar ierr = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 163886d161a7SShri Abhyankar rowners[0] = 0; 163986d161a7SShri Abhyankar for (i=2; i<=size; i++) { 164086d161a7SShri Abhyankar rowners[i] += rowners[i-1]; 164186d161a7SShri Abhyankar } 164286d161a7SShri Abhyankar rstart = rowners[rank]; 164386d161a7SShri Abhyankar rend = rowners[rank+1]; 164486d161a7SShri Abhyankar 164586d161a7SShri Abhyankar /* distribute row lengths to all processors */ 164649467e7dSBarry Smith ierr = PetscMalloc1(rend-rstart,&ourlens);CHKERRQ(ierr); 164786d161a7SShri Abhyankar if (!rank) { 1648785e854fSJed Brown ierr = PetscMalloc1(M,&rowlengths);CHKERRQ(ierr); 164986d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 1650785e854fSJed Brown ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr); 165186d161a7SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = rowners[i+1] - rowners[i]; 165286d161a7SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr); 165386d161a7SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 165486d161a7SShri Abhyankar } else { 165586d161a7SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr); 165686d161a7SShri Abhyankar } 165786d161a7SShri Abhyankar 165886d161a7SShri Abhyankar if (!rank) { 165986d161a7SShri Abhyankar /* calculate the number of nonzeros on each processor */ 1660785e854fSJed Brown ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr); 166186d161a7SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 166286d161a7SShri Abhyankar for (i=0; i<size; i++) { 166386d161a7SShri Abhyankar for (j=rowners[i]; j< rowners[i+1]; j++) { 166486d161a7SShri Abhyankar procsnz[i] += rowlengths[j]; 166586d161a7SShri Abhyankar } 166686d161a7SShri Abhyankar } 166786d161a7SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 166886d161a7SShri Abhyankar 166986d161a7SShri Abhyankar /* determine max buffer needed and allocate it */ 167086d161a7SShri Abhyankar maxnz = 0; 167186d161a7SShri Abhyankar for (i=0; i<size; i++) { 167286d161a7SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 167386d161a7SShri Abhyankar } 1674785e854fSJed Brown ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr); 167586d161a7SShri Abhyankar 167686d161a7SShri Abhyankar /* read in my part of the matrix column indices */ 167786d161a7SShri Abhyankar nz = procsnz[0]; 1678785e854fSJed Brown ierr = PetscMalloc1(nz,&mycols);CHKERRQ(ierr); 167986d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 168086d161a7SShri Abhyankar 168186d161a7SShri Abhyankar /* read in every one elses and ship off */ 168286d161a7SShri Abhyankar for (i=1; i<size; i++) { 168386d161a7SShri Abhyankar nz = procsnz[i]; 168486d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 168586d161a7SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 168686d161a7SShri Abhyankar } 168786d161a7SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 168886d161a7SShri Abhyankar } else { 168986d161a7SShri Abhyankar /* determine buffer space needed for message */ 169086d161a7SShri Abhyankar nz = 0; 169186d161a7SShri Abhyankar for (i=0; i<m; i++) { 169286d161a7SShri Abhyankar nz += ourlens[i]; 169386d161a7SShri Abhyankar } 1694854ce69bSBarry Smith ierr = PetscMalloc1(nz+1,&mycols);CHKERRQ(ierr); 169586d161a7SShri Abhyankar 169686d161a7SShri Abhyankar /* receive message of column indices*/ 169786d161a7SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 169886d161a7SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 169986d161a7SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 170086d161a7SShri Abhyankar } 170186d161a7SShri Abhyankar 170249467e7dSBarry Smith ierr = MatSetSizes(newmat,m,n,M,N);CHKERRQ(ierr); 1703dfdea288SBarry Smith a = (Mat_MPIDense*)newmat->data; 17042e3566b0SBarry Smith if (!a->A || !((Mat_SeqDense*)(a->A->data))->user_alloc) { 17050298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 1706dfdea288SBarry Smith } 170786d161a7SShri Abhyankar 170886d161a7SShri Abhyankar if (!rank) { 1709785e854fSJed Brown ierr = PetscMalloc1(maxnz,&vals);CHKERRQ(ierr); 171086d161a7SShri Abhyankar 171186d161a7SShri Abhyankar /* read in my part of the matrix numerical values */ 171286d161a7SShri Abhyankar nz = procsnz[0]; 171386d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 171486d161a7SShri Abhyankar 171586d161a7SShri Abhyankar /* insert into matrix */ 171686d161a7SShri Abhyankar jj = rstart; 171786d161a7SShri Abhyankar smycols = mycols; 171886d161a7SShri Abhyankar svals = vals; 171986d161a7SShri Abhyankar for (i=0; i<m; i++) { 172086d161a7SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 172186d161a7SShri Abhyankar smycols += ourlens[i]; 172286d161a7SShri Abhyankar svals += ourlens[i]; 172386d161a7SShri Abhyankar jj++; 172486d161a7SShri Abhyankar } 172586d161a7SShri Abhyankar 172686d161a7SShri Abhyankar /* read in other processors and ship out */ 172786d161a7SShri Abhyankar for (i=1; i<size; i++) { 172886d161a7SShri Abhyankar nz = procsnz[i]; 172986d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 173086d161a7SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 173186d161a7SShri Abhyankar } 173286d161a7SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 173386d161a7SShri Abhyankar } else { 173486d161a7SShri Abhyankar /* receive numeric values */ 1735854ce69bSBarry Smith ierr = PetscMalloc1(nz+1,&vals);CHKERRQ(ierr); 173686d161a7SShri Abhyankar 173786d161a7SShri Abhyankar /* receive message of values*/ 173886d161a7SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 173986d161a7SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 174086d161a7SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 174186d161a7SShri Abhyankar 174286d161a7SShri Abhyankar /* insert into matrix */ 174386d161a7SShri Abhyankar jj = rstart; 174486d161a7SShri Abhyankar smycols = mycols; 174586d161a7SShri Abhyankar svals = vals; 174686d161a7SShri Abhyankar for (i=0; i<m; i++) { 174786d161a7SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 174886d161a7SShri Abhyankar smycols += ourlens[i]; 174986d161a7SShri Abhyankar svals += ourlens[i]; 175086d161a7SShri Abhyankar jj++; 175186d161a7SShri Abhyankar } 175286d161a7SShri Abhyankar } 175349467e7dSBarry Smith ierr = PetscFree(ourlens);CHKERRQ(ierr); 175486d161a7SShri Abhyankar ierr = PetscFree(vals);CHKERRQ(ierr); 175586d161a7SShri Abhyankar ierr = PetscFree(mycols);CHKERRQ(ierr); 175686d161a7SShri Abhyankar ierr = PetscFree(rowners);CHKERRQ(ierr); 175786d161a7SShri Abhyankar 175886d161a7SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 175986d161a7SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 176086d161a7SShri Abhyankar PetscFunctionReturn(0); 176186d161a7SShri Abhyankar } 176286d161a7SShri Abhyankar 1763ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool *flag) 17646e4ee0c6SHong Zhang { 17656e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 17666e4ee0c6SHong Zhang Mat a,b; 1767ace3abfcSBarry Smith PetscBool flg; 17686e4ee0c6SHong Zhang PetscErrorCode ierr; 176990ace30eSBarry Smith 17706e4ee0c6SHong Zhang PetscFunctionBegin; 17716e4ee0c6SHong Zhang a = matA->A; 17726e4ee0c6SHong Zhang b = matB->A; 17736e4ee0c6SHong Zhang ierr = MatEqual(a,b,&flg);CHKERRQ(ierr); 1774b2566f29SBarry Smith ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 17756e4ee0c6SHong Zhang PetscFunctionReturn(0); 17766e4ee0c6SHong Zhang } 177790ace30eSBarry Smith 1778baa3c1c6SHong Zhang PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(Mat A) 1779baa3c1c6SHong Zhang { 1780baa3c1c6SHong Zhang PetscErrorCode ierr; 1781baa3c1c6SHong Zhang Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1782baa3c1c6SHong Zhang Mat_TransMatMultDense *atb = a->atbdense; 1783baa3c1c6SHong Zhang 1784baa3c1c6SHong Zhang PetscFunctionBegin; 1785c5ef1628SHong Zhang ierr = PetscFree3(atb->sendbuf,atb->atbarray,atb->recvcounts);CHKERRQ(ierr); 1786baa3c1c6SHong Zhang ierr = (atb->destroy)(A);CHKERRQ(ierr); 1787baa3c1c6SHong Zhang ierr = PetscFree(atb);CHKERRQ(ierr); 1788baa3c1c6SHong Zhang PetscFunctionReturn(0); 1789baa3c1c6SHong Zhang } 1790baa3c1c6SHong Zhang 1791cb20be35SHong Zhang PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 1792cb20be35SHong Zhang { 1793baa3c1c6SHong Zhang Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 1794660d5466SHong Zhang Mat_SeqDense *aseq=(Mat_SeqDense*)(a->A)->data, *bseq=(Mat_SeqDense*)(b->A)->data; 1795baa3c1c6SHong Zhang Mat_TransMatMultDense *atb = c->atbdense; 1796cb20be35SHong Zhang PetscErrorCode ierr; 1797cb20be35SHong Zhang MPI_Comm comm; 1798d5017740SHong Zhang PetscMPIInt rank,size,*recvcounts=atb->recvcounts; 1799c5ef1628SHong Zhang PetscScalar *carray,*atbarray=atb->atbarray,*sendbuf=atb->sendbuf; 1800d5017740SHong Zhang PetscInt i,cN=C->cmap->N,cM=C->rmap->N,proc,k,j; 1801660d5466SHong Zhang PetscScalar _DOne=1.0,_DZero=0.0; 1802adc7a786SHong Zhang PetscBLASInt am,an,bn,aN; 1803e68c0b26SHong Zhang const PetscInt *ranges; 1804cb20be35SHong Zhang 1805cb20be35SHong Zhang PetscFunctionBegin; 1806cb20be35SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 1807cb20be35SHong Zhang ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 1808cb20be35SHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1809e68c0b26SHong Zhang 1810c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 1811660d5466SHong Zhang ierr = PetscBLASIntCast(a->A->cmap->n,&an);CHKERRQ(ierr); 1812660d5466SHong Zhang ierr = PetscBLASIntCast(b->A->cmap->n,&bn);CHKERRQ(ierr); 1813660d5466SHong Zhang ierr = PetscBLASIntCast(a->A->rmap->n,&am);CHKERRQ(ierr); 1814adc7a786SHong Zhang ierr = PetscBLASIntCast(A->cmap->N,&aN);CHKERRQ(ierr); 1815adc7a786SHong Zhang PetscStackCallBLAS("BLASgemm",BLASgemm_("T","N",&an,&bn,&am,&_DOne,aseq->v,&aseq->lda,bseq->v,&bseq->lda,&_DZero,atbarray,&aN)); 1816cb20be35SHong Zhang 1817cb20be35SHong Zhang ierr = MatGetOwnershipRanges(C,&ranges);CHKERRQ(ierr); 1818c5ef1628SHong Zhang for (i=0; i<size; i++) recvcounts[i] = (ranges[i+1] - ranges[i])*cN; 1819cb20be35SHong Zhang 1820660d5466SHong Zhang /* arrange atbarray into sendbuf */ 1821cb20be35SHong Zhang k = 0; 1822cb20be35SHong Zhang for (proc=0; proc<size; proc++) { 1823baa3c1c6SHong Zhang for (j=0; j<cN; j++) { 1824c5ef1628SHong Zhang for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*cM]; 1825cb20be35SHong Zhang } 1826cb20be35SHong Zhang } 1827c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 1828660d5466SHong Zhang ierr = MatDenseGetArray(c->A,&carray);CHKERRQ(ierr); 18293462b7efSHong Zhang ierr = MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm);CHKERRQ(ierr); 1830660d5466SHong Zhang ierr = MatDenseRestoreArray(c->A,&carray);CHKERRQ(ierr); 1831cb20be35SHong Zhang PetscFunctionReturn(0); 1832cb20be35SHong Zhang } 1833cb20be35SHong Zhang 1834cb20be35SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C) 1835cb20be35SHong Zhang { 1836cb20be35SHong Zhang PetscErrorCode ierr; 1837baa3c1c6SHong Zhang Mat Cdense; 1838cb20be35SHong Zhang MPI_Comm comm; 1839baa3c1c6SHong Zhang PetscMPIInt size; 1840660d5466SHong Zhang PetscInt cm=A->cmap->n,cM,cN=B->cmap->N; 1841baa3c1c6SHong Zhang Mat_MPIDense *c; 1842baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 1843cb20be35SHong Zhang 1844cb20be35SHong Zhang PetscFunctionBegin; 1845baa3c1c6SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 1846cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 1847cb20be35SHong Zhang SETERRQ4(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 1848cb20be35SHong Zhang } 1849cb20be35SHong Zhang 1850baa3c1c6SHong Zhang /* create matrix product Cdense */ 1851baa3c1c6SHong Zhang ierr = MatCreate(comm,&Cdense);CHKERRQ(ierr); 1852660d5466SHong Zhang ierr = MatSetSizes(Cdense,cm,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 1853baa3c1c6SHong Zhang ierr = MatSetType(Cdense,MATMPIDENSE);CHKERRQ(ierr); 1854baa3c1c6SHong Zhang ierr = MatMPIDenseSetPreallocation(Cdense,NULL);CHKERRQ(ierr); 1855baa3c1c6SHong Zhang ierr = MatAssemblyBegin(Cdense,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1856baa3c1c6SHong Zhang ierr = MatAssemblyEnd(Cdense,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1857baa3c1c6SHong Zhang *C = Cdense; 1858baa3c1c6SHong Zhang 1859baa3c1c6SHong Zhang /* create data structure for reuse Cdense */ 1860baa3c1c6SHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1861baa3c1c6SHong Zhang ierr = PetscNew(&atb);CHKERRQ(ierr); 1862660d5466SHong Zhang cM = Cdense->rmap->N; 1863c5ef1628SHong Zhang ierr = PetscMalloc3(cM*cN,&atb->sendbuf,cM*cN,&atb->atbarray,size,&atb->recvcounts);CHKERRQ(ierr); 1864baa3c1c6SHong Zhang 1865baa3c1c6SHong Zhang c = (Mat_MPIDense*)Cdense->data; 1866baa3c1c6SHong Zhang c->atbdense = atb; 1867baa3c1c6SHong Zhang atb->destroy = Cdense->ops->destroy; 1868baa3c1c6SHong Zhang Cdense->ops->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 1869cb20be35SHong Zhang PetscFunctionReturn(0); 1870cb20be35SHong Zhang } 1871cb20be35SHong Zhang 1872cb20be35SHong Zhang PetscErrorCode MatTransposeMatMult_MPIDense_MPIDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 1873cb20be35SHong Zhang { 1874cb20be35SHong Zhang PetscErrorCode ierr; 1875cb20be35SHong Zhang 1876cb20be35SHong Zhang PetscFunctionBegin; 1877cb20be35SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 1878cb20be35SHong Zhang ierr = MatTransposeMatMultSymbolic_MPIDense_MPIDense(A,B,fill,C);CHKERRQ(ierr); 1879cb20be35SHong Zhang } 1880cb20be35SHong Zhang ierr = MatTransposeMatMultNumeric_MPIDense_MPIDense(A,B,*C);CHKERRQ(ierr); 1881cb20be35SHong Zhang PetscFunctionReturn(0); 1882cb20be35SHong Zhang } 1883320f2790SHong Zhang 1884320f2790SHong Zhang PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(Mat A) 1885320f2790SHong Zhang { 1886320f2790SHong Zhang PetscErrorCode ierr; 1887320f2790SHong Zhang Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1888320f2790SHong Zhang Mat_MatMultDense *ab = a->abdense; 1889320f2790SHong Zhang 1890320f2790SHong Zhang PetscFunctionBegin; 1891320f2790SHong Zhang ierr = MatDestroy(&ab->Ce);CHKERRQ(ierr); 1892320f2790SHong Zhang ierr = MatDestroy(&ab->Ae);CHKERRQ(ierr); 1893320f2790SHong Zhang ierr = MatDestroy(&ab->Be);CHKERRQ(ierr); 1894320f2790SHong Zhang 1895320f2790SHong Zhang ierr = (ab->destroy)(A);CHKERRQ(ierr); 1896320f2790SHong Zhang ierr = PetscFree(ab);CHKERRQ(ierr); 1897320f2790SHong Zhang PetscFunctionReturn(0); 1898320f2790SHong Zhang } 1899320f2790SHong Zhang 19005242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1901320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 1902320f2790SHong Zhang { 1903320f2790SHong Zhang PetscErrorCode ierr; 1904320f2790SHong Zhang Mat_MPIDense *c=(Mat_MPIDense*)C->data; 1905320f2790SHong Zhang Mat_MatMultDense *ab=c->abdense; 1906320f2790SHong Zhang 1907320f2790SHong Zhang PetscFunctionBegin; 1908de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae);CHKERRQ(ierr); 1909de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be);CHKERRQ(ierr); 1910320f2790SHong Zhang ierr = MatMatMultNumeric(ab->Ae,ab->Be,ab->Ce);CHKERRQ(ierr); 1911de0a22f0SHong Zhang ierr = MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C);CHKERRQ(ierr); 1912320f2790SHong Zhang PetscFunctionReturn(0); 1913320f2790SHong Zhang } 1914320f2790SHong Zhang 1915320f2790SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C) 1916320f2790SHong Zhang { 1917320f2790SHong Zhang PetscErrorCode ierr; 1918320f2790SHong Zhang Mat Ae,Be,Ce; 1919320f2790SHong Zhang Mat_MPIDense *c; 1920320f2790SHong Zhang Mat_MatMultDense *ab; 1921320f2790SHong Zhang 1922320f2790SHong Zhang PetscFunctionBegin; 1923320f2790SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) { 1924378336b6SHong Zhang SETERRQ4(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 1925320f2790SHong Zhang } 1926320f2790SHong Zhang 1927320f2790SHong Zhang /* convert A and B to Elemental matrices Ae and Be */ 1928320f2790SHong Zhang ierr = MatConvert(A,MATELEMENTAL,MAT_INITIAL_MATRIX, &Ae);CHKERRQ(ierr); 1929320f2790SHong Zhang ierr = MatConvert(B,MATELEMENTAL,MAT_INITIAL_MATRIX, &Be);CHKERRQ(ierr); 1930320f2790SHong Zhang 1931320f2790SHong Zhang /* Ce = Ae*Be */ 1932320f2790SHong Zhang ierr = MatMatMultSymbolic(Ae,Be,fill,&Ce);CHKERRQ(ierr); 1933320f2790SHong Zhang ierr = MatMatMultNumeric(Ae,Be,Ce);CHKERRQ(ierr); 1934320f2790SHong Zhang 1935320f2790SHong Zhang /* convert Ce to C */ 1936320f2790SHong Zhang ierr = MatConvert(Ce,MATMPIDENSE,MAT_INITIAL_MATRIX,C);CHKERRQ(ierr); 1937320f2790SHong Zhang 1938320f2790SHong Zhang /* create data structure for reuse Cdense */ 1939320f2790SHong Zhang ierr = PetscNew(&ab);CHKERRQ(ierr); 1940320f2790SHong Zhang c = (Mat_MPIDense*)(*C)->data; 1941320f2790SHong Zhang c->abdense = ab; 1942320f2790SHong Zhang 1943320f2790SHong Zhang ab->Ae = Ae; 1944320f2790SHong Zhang ab->Be = Be; 1945320f2790SHong Zhang ab->Ce = Ce; 1946320f2790SHong Zhang ab->destroy = (*C)->ops->destroy; 1947320f2790SHong Zhang (*C)->ops->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 19489775878aSHong Zhang (*C)->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 1949320f2790SHong Zhang PetscFunctionReturn(0); 1950320f2790SHong Zhang } 1951320f2790SHong Zhang 1952150d2497SBarry Smith PETSC_INTERN PetscErrorCode MatMatMult_MPIDense_MPIDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 1953320f2790SHong Zhang { 1954320f2790SHong Zhang PetscErrorCode ierr; 1955320f2790SHong Zhang 1956320f2790SHong Zhang PetscFunctionBegin; 1957320f2790SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* simbolic product includes numeric product */ 195857299f2fSHong Zhang ierr = PetscLogEventBegin(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 1959320f2790SHong Zhang ierr = MatMatMultSymbolic_MPIDense_MPIDense(A,B,fill,C);CHKERRQ(ierr); 196057299f2fSHong Zhang ierr = PetscLogEventEnd(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 1961320f2790SHong Zhang } else { 196257299f2fSHong Zhang ierr = PetscLogEventBegin(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 1963320f2790SHong Zhang ierr = MatMatMultNumeric_MPIDense_MPIDense(A,B,*C);CHKERRQ(ierr); 196457299f2fSHong Zhang ierr = PetscLogEventEnd(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 1965320f2790SHong Zhang } 1966320f2790SHong Zhang PetscFunctionReturn(0); 1967320f2790SHong Zhang } 19685242a7b1SHong Zhang #endif 1969