1 #ifdef PETSC_RCS_HEADER 2 static char vcid[] = "$Id: mpidense.c,v 1.84 1998/04/13 17:36:15 bsmith Exp curfman $"; 3 #endif 4 5 /* 6 Basic functions for basic parallel dense matrices. 7 */ 8 9 #include "src/mat/impls/dense/mpi/mpidense.h" 10 #include "src/vec/vecimpl.h" 11 12 #undef __FUNC__ 13 #define __FUNC__ "MatSetValues_MPIDense" 14 int MatSetValues_MPIDense(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v,InsertMode addv) 15 { 16 Mat_MPIDense *A = (Mat_MPIDense *) mat->data; 17 int ierr, i, j, rstart = A->rstart, rend = A->rend, row; 18 int roworiented = A->roworiented; 19 20 PetscFunctionBegin; 21 for ( i=0; i<m; i++ ) { 22 if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row"); 23 if (idxm[i] >= A->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 24 if (idxm[i] >= rstart && idxm[i] < rend) { 25 row = idxm[i] - rstart; 26 if (roworiented) { 27 ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv); CHKERRQ(ierr); 28 } else { 29 for ( j=0; j<n; j++ ) { 30 if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column"); 31 if (idxn[j] >= A->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large"); 32 ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv); CHKERRQ(ierr); 33 } 34 } 35 } else { 36 if (roworiented) { 37 ierr = StashValues_Private(&A->stash,idxm[i],n,idxn,v+i*n,addv); CHKERRQ(ierr); 38 } else { /* must stash each seperately */ 39 row = idxm[i]; 40 for ( j=0; j<n; j++ ) { 41 ierr = StashValues_Private(&A->stash,row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr); 42 } 43 } 44 } 45 } 46 PetscFunctionReturn(0); 47 } 48 49 #undef __FUNC__ 50 #define __FUNC__ "MatGetValues_MPIDense" 51 int MatGetValues_MPIDense(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v) 52 { 53 Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data; 54 int ierr, i, j, rstart = mdn->rstart, rend = mdn->rend, row; 55 56 PetscFunctionBegin; 57 for ( i=0; i<m; i++ ) { 58 if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row"); 59 if (idxm[i] >= mdn->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 60 if (idxm[i] >= rstart && idxm[i] < rend) { 61 row = idxm[i] - rstart; 62 for ( j=0; j<n; j++ ) { 63 if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column"); 64 if (idxn[j] >= mdn->N) { 65 SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large"); 66 } 67 ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j); CHKERRQ(ierr); 68 } 69 } else { 70 SETERRQ(PETSC_ERR_SUP,0,"Only local values currently supported"); 71 } 72 } 73 PetscFunctionReturn(0); 74 } 75 76 #undef __FUNC__ 77 #define __FUNC__ "MatGetArray_MPIDense" 78 int MatGetArray_MPIDense(Mat A,Scalar **array) 79 { 80 Mat_MPIDense *a = (Mat_MPIDense *) A->data; 81 int ierr; 82 83 PetscFunctionBegin; 84 ierr = MatGetArray(a->A,array); CHKERRQ(ierr); 85 PetscFunctionReturn(0); 86 } 87 88 #undef __FUNC__ 89 #define __FUNC__ "MatRestoreArray_MPIDense" 90 int MatRestoreArray_MPIDense(Mat A,Scalar **array) 91 { 92 PetscFunctionBegin; 93 PetscFunctionReturn(0); 94 } 95 96 #undef __FUNC__ 97 #define __FUNC__ "MatAssemblyBegin_MPIDense" 98 int MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 99 { 100 Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data; 101 MPI_Comm comm = mat->comm; 102 int size = mdn->size, *owners = mdn->rowners, rank = mdn->rank; 103 int *nprocs,i,j,idx,*procs,nsends,nreceives,nmax,*work; 104 int tag = mat->tag, *owner,*starts,count,ierr; 105 InsertMode addv; 106 MPI_Request *send_waits,*recv_waits; 107 Scalar *rvalues,*svalues; 108 109 PetscFunctionBegin; 110 /* make sure all processors are either in INSERTMODE or ADDMODE */ 111 ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,comm);CHKERRQ(ierr); 112 if (addv == (ADD_VALUES|INSERT_VALUES)) { 113 SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Cannot mix adds/inserts on different procs"); 114 } 115 mat->insertmode = addv; /* in case this processor had no cache */ 116 117 /* first count number of contributors to each processor */ 118 nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs); 119 PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size; 120 owner = (int *) PetscMalloc( (mdn->stash.n+1)*sizeof(int) ); CHKPTRQ(owner); 121 for ( i=0; i<mdn->stash.n; i++ ) { 122 idx = mdn->stash.idx[i]; 123 for ( j=0; j<size; j++ ) { 124 if (idx >= owners[j] && idx < owners[j+1]) { 125 nprocs[j]++; procs[j] = 1; owner[i] = j; break; 126 } 127 } 128 } 129 nsends = 0; for ( i=0; i<size; i++ ) { nsends += procs[i];} 130 131 /* inform other processors of number of messages and max length*/ 132 work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work); 133 ierr = MPI_Allreduce(procs,work,size,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr); 134 nreceives = work[rank]; 135 if (nreceives > size) SETERRQ(PETSC_ERR_PLIB,0,"Internal PETSc error"); 136 ierr = MPI_Allreduce(nprocs,work,size,MPI_INT,MPI_MAX,comm);CHKERRQ(ierr); 137 nmax = work[rank]; 138 PetscFree(work); 139 140 /* post receives: 141 1) each message will consist of ordered pairs 142 (global index,value) we store the global index as a double 143 to simplify the message passing. 144 2) since we don't know how long each individual message is we 145 allocate the largest needed buffer for each receive. Potentially 146 this is a lot of wasted space. 147 148 This could be done better. 149 */ 150 rvalues = (Scalar *) PetscMalloc(3*(nreceives+1)*(nmax+1)*sizeof(Scalar));CHKPTRQ(rvalues); 151 recv_waits = (MPI_Request *) PetscMalloc((nreceives+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits); 152 for ( i=0; i<nreceives; i++ ) { 153 ierr = MPI_Irecv(rvalues+3*nmax*i,3*nmax,MPIU_SCALAR,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 154 } 155 156 /* do sends: 157 1) starts[i] gives the starting index in svalues for stuff going to 158 the ith processor 159 */ 160 svalues = (Scalar *) PetscMalloc( 3*(mdn->stash.n+1)*sizeof(Scalar));CHKPTRQ(svalues); 161 send_waits = (MPI_Request *) PetscMalloc((nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits); 162 starts = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(starts); 163 starts[0] = 0; 164 for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 165 for ( i=0; i<mdn->stash.n; i++ ) { 166 svalues[3*starts[owner[i]]] = (Scalar) mdn->stash.idx[i]; 167 svalues[3*starts[owner[i]]+1] = (Scalar) mdn->stash.idy[i]; 168 svalues[3*(starts[owner[i]]++)+2] = mdn->stash.array[i]; 169 } 170 PetscFree(owner); 171 starts[0] = 0; 172 for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 173 count = 0; 174 for ( i=0; i<size; i++ ) { 175 if (procs[i]) { 176 ierr = MPI_Isend(svalues+3*starts[i],3*nprocs[i],MPIU_SCALAR,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 177 } 178 } 179 PetscFree(starts); PetscFree(nprocs); 180 181 /* Free cache space */ 182 PLogInfo(mat,"MatAssemblyBegin_MPIDense:Number of off-processor values %d\n",mdn->stash.n); 183 ierr = StashDestroy_Private(&mdn->stash); CHKERRQ(ierr); 184 185 mdn->svalues = svalues; mdn->rvalues = rvalues; 186 mdn->nsends = nsends; mdn->nrecvs = nreceives; 187 mdn->send_waits = send_waits; mdn->recv_waits = recv_waits; 188 mdn->rmax = nmax; 189 190 PetscFunctionReturn(0); 191 } 192 extern int MatSetUpMultiply_MPIDense(Mat); 193 194 #undef __FUNC__ 195 #define __FUNC__ "MatAssemblyEnd_MPIDense" 196 int MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 197 { 198 Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data; 199 MPI_Status *send_status,recv_status; 200 int imdex, nrecvs=mdn->nrecvs, count=nrecvs, i, n, ierr, row, col; 201 Scalar *values,val; 202 InsertMode addv = mat->insertmode; 203 204 PetscFunctionBegin; 205 /* wait on receives */ 206 while (count) { 207 ierr = MPI_Waitany(nrecvs,mdn->recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 208 /* unpack receives into our local space */ 209 values = mdn->rvalues + 3*imdex*mdn->rmax; 210 ierr = MPI_Get_count(&recv_status,MPIU_SCALAR,&n);CHKERRQ(ierr); 211 n = n/3; 212 for ( i=0; i<n; i++ ) { 213 row = (int) PetscReal(values[3*i]) - mdn->rstart; 214 col = (int) PetscReal(values[3*i+1]); 215 val = values[3*i+2]; 216 if (col >= 0 && col < mdn->N) { 217 MatSetValues(mdn->A,1,&row,1,&col,&val,addv); 218 } 219 else {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Invalid column");} 220 } 221 count--; 222 } 223 PetscFree(mdn->recv_waits); PetscFree(mdn->rvalues); 224 225 /* wait on sends */ 226 if (mdn->nsends) { 227 send_status = (MPI_Status *) PetscMalloc(mdn->nsends*sizeof(MPI_Status));CHKPTRQ(send_status); 228 ierr = MPI_Waitall(mdn->nsends,mdn->send_waits,send_status);CHKERRQ(ierr); 229 PetscFree(send_status); 230 } 231 PetscFree(mdn->send_waits); PetscFree(mdn->svalues); 232 233 ierr = MatAssemblyBegin(mdn->A,mode); CHKERRQ(ierr); 234 ierr = MatAssemblyEnd(mdn->A,mode); CHKERRQ(ierr); 235 236 if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 237 ierr = MatSetUpMultiply_MPIDense(mat); CHKERRQ(ierr); 238 } 239 PetscFunctionReturn(0); 240 } 241 242 #undef __FUNC__ 243 #define __FUNC__ "MatZeroEntries_MPIDense" 244 int MatZeroEntries_MPIDense(Mat A) 245 { 246 int ierr; 247 Mat_MPIDense *l = (Mat_MPIDense *) A->data; 248 249 PetscFunctionBegin; 250 ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 251 PetscFunctionReturn(0); 252 } 253 254 #undef __FUNC__ 255 #define __FUNC__ "MatGetBlockSize_MPIDense" 256 int MatGetBlockSize_MPIDense(Mat A,int *bs) 257 { 258 PetscFunctionBegin; 259 *bs = 1; 260 PetscFunctionReturn(0); 261 } 262 263 /* the code does not do the diagonal entries correctly unless the 264 matrix is square and the column and row owerships are identical. 265 This is a BUG. The only way to fix it seems to be to access 266 mdn->A and mdn->B directly and not through the MatZeroRows() 267 routine. 268 */ 269 #undef __FUNC__ 270 #define __FUNC__ "MatZeroRows_MPIDense" 271 int MatZeroRows_MPIDense(Mat A,IS is,Scalar *diag) 272 { 273 Mat_MPIDense *l = (Mat_MPIDense *) A->data; 274 int i,ierr,N, *rows,*owners = l->rowners,size = l->size; 275 int *procs,*nprocs,j,found,idx,nsends,*work; 276 int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 277 int *rvalues,tag = A->tag,count,base,slen,n,*source; 278 int *lens,imdex,*lrows,*values; 279 MPI_Comm comm = A->comm; 280 MPI_Request *send_waits,*recv_waits; 281 MPI_Status recv_status,*send_status; 282 IS istmp; 283 284 PetscFunctionBegin; 285 ierr = ISGetSize(is,&N); CHKERRQ(ierr); 286 ierr = ISGetIndices(is,&rows); CHKERRQ(ierr); 287 288 /* first count number of contributors to each processor */ 289 nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs); 290 PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size; 291 owner = (int *) PetscMalloc((N+1)*sizeof(int)); CHKPTRQ(owner); /* see note*/ 292 for ( i=0; i<N; i++ ) { 293 idx = rows[i]; 294 found = 0; 295 for ( j=0; j<size; j++ ) { 296 if (idx >= owners[j] && idx < owners[j+1]) { 297 nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break; 298 } 299 } 300 if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Index out of range"); 301 } 302 nsends = 0; for ( i=0; i<size; i++ ) { nsends += procs[i];} 303 304 /* inform other processors of number of messages and max length*/ 305 work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work); 306 ierr = MPI_Allreduce( procs, work,size,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr); 307 nrecvs = work[rank]; 308 ierr = MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);CHKERRQ(ierr); 309 nmax = work[rank]; 310 PetscFree(work); 311 312 /* post receives: */ 313 rvalues = (int *) PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int));CHKPTRQ(rvalues); 314 recv_waits = (MPI_Request *) PetscMalloc((nrecvs+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits); 315 for ( i=0; i<nrecvs; i++ ) { 316 ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 317 } 318 319 /* do sends: 320 1) starts[i] gives the starting index in svalues for stuff going to 321 the ith processor 322 */ 323 svalues = (int *) PetscMalloc( (N+1)*sizeof(int) ); CHKPTRQ(svalues); 324 send_waits = (MPI_Request *) PetscMalloc((nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits); 325 starts = (int *) PetscMalloc( (size+1)*sizeof(int) ); CHKPTRQ(starts); 326 starts[0] = 0; 327 for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 328 for ( i=0; i<N; i++ ) { 329 svalues[starts[owner[i]]++] = rows[i]; 330 } 331 ISRestoreIndices(is,&rows); 332 333 starts[0] = 0; 334 for ( i=1; i<size+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 335 count = 0; 336 for ( i=0; i<size; i++ ) { 337 if (procs[i]) { 338 ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 339 } 340 } 341 PetscFree(starts); 342 343 base = owners[rank]; 344 345 /* wait on receives */ 346 lens = (int *) PetscMalloc( 2*(nrecvs+1)*sizeof(int) ); CHKPTRQ(lens); 347 source = lens + nrecvs; 348 count = nrecvs; slen = 0; 349 while (count) { 350 ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 351 /* unpack receives into our local space */ 352 ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr); 353 source[imdex] = recv_status.MPI_SOURCE; 354 lens[imdex] = n; 355 slen += n; 356 count--; 357 } 358 PetscFree(recv_waits); 359 360 /* move the data into the send scatter */ 361 lrows = (int *) PetscMalloc( (slen+1)*sizeof(int) ); CHKPTRQ(lrows); 362 count = 0; 363 for ( i=0; i<nrecvs; i++ ) { 364 values = rvalues + i*nmax; 365 for ( j=0; j<lens[i]; j++ ) { 366 lrows[count++] = values[j] - base; 367 } 368 } 369 PetscFree(rvalues); PetscFree(lens); 370 PetscFree(owner); PetscFree(nprocs); 371 372 /* actually zap the local rows */ 373 ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 374 PLogObjectParent(A,istmp); 375 PetscFree(lrows); 376 ierr = MatZeroRows(l->A,istmp,diag); CHKERRQ(ierr); 377 ierr = ISDestroy(istmp); CHKERRQ(ierr); 378 379 /* wait on sends */ 380 if (nsends) { 381 send_status = (MPI_Status *) PetscMalloc(nsends*sizeof(MPI_Status));CHKPTRQ(send_status); 382 ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 383 PetscFree(send_status); 384 } 385 PetscFree(send_waits); PetscFree(svalues); 386 387 PetscFunctionReturn(0); 388 } 389 390 #undef __FUNC__ 391 #define __FUNC__ "MatMult_MPIDense" 392 int MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 393 { 394 Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data; 395 int ierr; 396 397 PetscFunctionBegin; 398 ierr = VecScatterBegin(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr); 399 ierr = VecScatterEnd(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr); 400 ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy); CHKERRQ(ierr); 401 PetscFunctionReturn(0); 402 } 403 404 #undef __FUNC__ 405 #define __FUNC__ "MatMultAdd_MPIDense" 406 int MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 407 { 408 Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data; 409 int ierr; 410 411 PetscFunctionBegin; 412 ierr = VecScatterBegin(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr); 413 ierr = VecScatterEnd(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr); 414 ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz); CHKERRQ(ierr); 415 PetscFunctionReturn(0); 416 } 417 418 #undef __FUNC__ 419 #define __FUNC__ "MatMultTrans_MPIDense" 420 int MatMultTrans_MPIDense(Mat A,Vec xx,Vec yy) 421 { 422 Mat_MPIDense *a = (Mat_MPIDense *) A->data; 423 int ierr; 424 Scalar zero = 0.0; 425 426 PetscFunctionBegin; 427 ierr = VecSet(&zero,yy); CHKERRQ(ierr); 428 ierr = MatMultTrans_SeqDense(a->A,xx,a->lvec); CHKERRQ(ierr); 429 ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr); 430 ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr); 431 PetscFunctionReturn(0); 432 } 433 434 #undef __FUNC__ 435 #define __FUNC__ "MatMultTransAdd_MPIDense" 436 int MatMultTransAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 437 { 438 Mat_MPIDense *a = (Mat_MPIDense *) A->data; 439 int ierr; 440 441 PetscFunctionBegin; 442 ierr = VecCopy(yy,zz); CHKERRQ(ierr); 443 ierr = MatMultTrans_SeqDense(a->A,xx,a->lvec); CHKERRQ(ierr); 444 ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr); 445 ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr); 446 PetscFunctionReturn(0); 447 } 448 449 #undef __FUNC__ 450 #define __FUNC__ "MatGetDiagonal_MPIDense" 451 int MatGetDiagonal_MPIDense(Mat A,Vec v) 452 { 453 Mat_MPIDense *a = (Mat_MPIDense *) A->data; 454 Mat_SeqDense *aloc = (Mat_SeqDense *) a->A->data; 455 int ierr, len, i, n, m = a->m, radd; 456 Scalar *x, zero = 0.0; 457 458 PetscFunctionBegin; 459 VecSet(&zero,v); 460 ierr = VecGetArray(v,&x); CHKERRQ(ierr); 461 ierr = VecGetSize(v,&n); CHKERRQ(ierr); 462 if (n != a->M) SETERRQ(PETSC_ERR_ARG_SIZ,0,"Nonconforming mat and vec"); 463 len = PetscMin(aloc->m,aloc->n); 464 radd = a->rstart*m; 465 for ( i=0; i<len; i++ ) { 466 x[i] = aloc->v[radd + i*m + i]; 467 } 468 PetscFunctionReturn(0); 469 } 470 471 #undef __FUNC__ 472 #define __FUNC__ "MatDestroy_MPIDense" 473 int MatDestroy_MPIDense(Mat mat) 474 { 475 Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data; 476 int ierr; 477 478 PetscFunctionBegin; 479 #if defined(USE_PETSC_LOG) 480 PLogObjectState((PetscObject)mat,"Rows=%d, Cols=%d",mdn->M,mdn->N); 481 #endif 482 PetscFree(mdn->rowners); 483 ierr = MatDestroy(mdn->A); CHKERRQ(ierr); 484 if (mdn->lvec) VecDestroy(mdn->lvec); 485 if (mdn->Mvctx) VecScatterDestroy(mdn->Mvctx); 486 if (mdn->factor) { 487 if (mdn->factor->temp) PetscFree(mdn->factor->temp); 488 if (mdn->factor->tag) PetscFree(mdn->factor->tag); 489 if (mdn->factor->pivots) PetscFree(mdn->factor->pivots); 490 PetscFree(mdn->factor); 491 } 492 PetscFree(mdn); 493 if (mat->mapping) { 494 ierr = ISLocalToGlobalMappingDestroy(mat->mapping); CHKERRQ(ierr); 495 } 496 PLogObjectDestroy(mat); 497 PetscHeaderDestroy(mat); 498 PetscFunctionReturn(0); 499 } 500 501 #include "pinclude/pviewer.h" 502 503 #undef __FUNC__ 504 #define __FUNC__ "MatView_MPIDense_Binary" 505 static int MatView_MPIDense_Binary(Mat mat,Viewer viewer) 506 { 507 Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data; 508 int ierr; 509 510 PetscFunctionBegin; 511 if (mdn->size == 1) { 512 ierr = MatView(mdn->A,viewer); CHKERRQ(ierr); 513 } 514 else SETERRQ(PETSC_ERR_SUP,0,"Only uniprocessor output supported"); 515 PetscFunctionReturn(0); 516 } 517 518 #undef __FUNC__ 519 #define __FUNC__ "MatView_MPIDense_ASCII" 520 static int MatView_MPIDense_ASCII(Mat mat,Viewer viewer) 521 { 522 Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data; 523 int ierr, format; 524 FILE *fd; 525 ViewerType vtype; 526 527 PetscFunctionBegin; 528 ierr = ViewerGetType(viewer,&vtype);CHKERRQ(ierr); 529 ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr); 530 ierr = ViewerGetFormat(viewer,&format); 531 if (format == VIEWER_FORMAT_ASCII_INFO_LONG) { 532 int rank; 533 MatInfo info; 534 MPI_Comm_rank(mat->comm,&rank); 535 ierr = MatGetInfo(mat,MAT_LOCAL,&info); 536 PetscSequentialPhaseBegin(mat->comm,1); 537 fprintf(fd," [%d] local rows %d nz %d nz alloced %d mem %d \n",rank,mdn->m, 538 (int)info.nz_used,(int)info.nz_allocated,(int)info.memory); 539 fflush(fd); 540 PetscSequentialPhaseEnd(mat->comm,1); 541 ierr = VecScatterView(mdn->Mvctx,viewer); CHKERRQ(ierr); 542 PetscFunctionReturn(0); 543 } 544 else if (format == VIEWER_FORMAT_ASCII_INFO) { 545 PetscFunctionReturn(0); 546 } 547 if (vtype == ASCII_FILE_VIEWER) { 548 PetscSequentialPhaseBegin(mat->comm,1); 549 fprintf(fd,"[%d] rows %d starts %d ends %d cols %d\n", 550 mdn->rank,mdn->m,mdn->rstart,mdn->rend,mdn->n); 551 ierr = MatView(mdn->A,viewer); CHKERRQ(ierr); 552 fflush(fd); 553 PetscSequentialPhaseEnd(mat->comm,1); 554 } else { 555 int size = mdn->size, rank = mdn->rank; 556 if (size == 1) { 557 ierr = MatView(mdn->A,viewer); CHKERRQ(ierr); 558 } else { 559 /* assemble the entire matrix onto first processor. */ 560 Mat A; 561 int M = mdn->M, N = mdn->N,m,row,i, nz, *cols; 562 Scalar *vals; 563 Mat_SeqDense *Amdn = (Mat_SeqDense*) mdn->A->data; 564 565 if (!rank) { 566 ierr = MatCreateMPIDense(mat->comm,M,N,M,N,PETSC_NULL,&A); CHKERRQ(ierr); 567 } else { 568 ierr = MatCreateMPIDense(mat->comm,0,N,M,N,PETSC_NULL,&A); CHKERRQ(ierr); 569 } 570 PLogObjectParent(mat,A); 571 572 /* Copy the matrix ... This isn't the most efficient means, 573 but it's quick for now */ 574 row = mdn->rstart; m = Amdn->m; 575 for ( i=0; i<m; i++ ) { 576 ierr = MatGetRow(mat,row,&nz,&cols,&vals); CHKERRQ(ierr); 577 ierr = MatSetValues(A,1,&row,nz,cols,vals,INSERT_VALUES); CHKERRQ(ierr); 578 ierr = MatRestoreRow(mat,row,&nz,&cols,&vals); CHKERRQ(ierr); 579 row++; 580 } 581 582 ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 583 ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 584 if (!rank) { 585 ierr = MatView(((Mat_MPIDense*)(A->data))->A,viewer); CHKERRQ(ierr); 586 } 587 ierr = MatDestroy(A); CHKERRQ(ierr); 588 } 589 } 590 PetscFunctionReturn(0); 591 } 592 593 #undef __FUNC__ 594 #define __FUNC__ "MatView_MPIDense" 595 int MatView_MPIDense(Mat mat,Viewer viewer) 596 { 597 int ierr; 598 ViewerType vtype; 599 600 ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr); 601 if (vtype == ASCII_FILE_VIEWER) { 602 ierr = MatView_MPIDense_ASCII(mat,viewer); CHKERRQ(ierr); 603 } else if (vtype == ASCII_FILES_VIEWER) { 604 ierr = MatView_MPIDense_ASCII(mat,viewer); CHKERRQ(ierr); 605 } else if (vtype == BINARY_FILE_VIEWER) { 606 ierr = MatView_MPIDense_Binary(mat,viewer);CHKERRQ(ierr); 607 } else { 608 SETERRQ(1,1,"Viewer type not supported by PETSc object"); 609 } 610 PetscFunctionReturn(0); 611 } 612 613 #undef __FUNC__ 614 #define __FUNC__ "MatGetInfo_MPIDense" 615 int MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 616 { 617 Mat_MPIDense *mat = (Mat_MPIDense *) A->data; 618 Mat mdn = mat->A; 619 int ierr; 620 double isend[5], irecv[5]; 621 622 PetscFunctionBegin; 623 info->rows_global = (double)mat->M; 624 info->columns_global = (double)mat->N; 625 info->rows_local = (double)mat->m; 626 info->columns_local = (double)mat->N; 627 info->block_size = 1.0; 628 ierr = MatGetInfo(mdn,MAT_LOCAL,info); CHKERRQ(ierr); 629 isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 630 isend[3] = info->memory; isend[4] = info->mallocs; 631 if (flag == MAT_LOCAL) { 632 info->nz_used = isend[0]; 633 info->nz_allocated = isend[1]; 634 info->nz_unneeded = isend[2]; 635 info->memory = isend[3]; 636 info->mallocs = isend[4]; 637 } else if (flag == MAT_GLOBAL_MAX) { 638 ierr = MPI_Allreduce(isend,irecv,5,MPI_INT,MPI_MAX,A->comm);CHKERRQ(ierr); 639 info->nz_used = irecv[0]; 640 info->nz_allocated = irecv[1]; 641 info->nz_unneeded = irecv[2]; 642 info->memory = irecv[3]; 643 info->mallocs = irecv[4]; 644 } else if (flag == MAT_GLOBAL_SUM) { 645 ierr = MPI_Allreduce(isend,irecv,5,MPI_INT,MPI_SUM,A->comm);CHKERRQ(ierr); 646 info->nz_used = irecv[0]; 647 info->nz_allocated = irecv[1]; 648 info->nz_unneeded = irecv[2]; 649 info->memory = irecv[3]; 650 info->mallocs = irecv[4]; 651 } 652 info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 653 info->fill_ratio_needed = 0; 654 info->factor_mallocs = 0; 655 PetscFunctionReturn(0); 656 } 657 658 /* extern int MatLUFactorSymbolic_MPIDense(Mat,IS,IS,double,Mat*); 659 extern int MatLUFactorNumeric_MPIDense(Mat,Mat*); 660 extern int MatLUFactor_MPIDense(Mat,IS,IS,double); 661 extern int MatSolve_MPIDense(Mat,Vec,Vec); 662 extern int MatSolveAdd_MPIDense(Mat,Vec,Vec,Vec); 663 extern int MatSolveTrans_MPIDense(Mat,Vec,Vec); 664 extern int MatSolveTransAdd_MPIDense(Mat,Vec,Vec,Vec); */ 665 666 #undef __FUNC__ 667 #define __FUNC__ "MatSetOption_MPIDense" 668 int MatSetOption_MPIDense(Mat A,MatOption op) 669 { 670 Mat_MPIDense *a = (Mat_MPIDense *) A->data; 671 672 PetscFunctionBegin; 673 if (op == MAT_NO_NEW_NONZERO_LOCATIONS || 674 op == MAT_YES_NEW_NONZERO_LOCATIONS || 675 op == MAT_NEW_NONZERO_LOCATION_ERROR || 676 op == MAT_NEW_NONZERO_ALLOCATION_ERROR || 677 op == MAT_COLUMNS_SORTED || 678 op == MAT_COLUMNS_UNSORTED) { 679 MatSetOption(a->A,op); 680 } else if (op == MAT_ROW_ORIENTED) { 681 a->roworiented = 1; 682 MatSetOption(a->A,op); 683 } else if (op == MAT_ROWS_SORTED || 684 op == MAT_ROWS_UNSORTED || 685 op == MAT_SYMMETRIC || 686 op == MAT_STRUCTURALLY_SYMMETRIC || 687 op == MAT_YES_NEW_DIAGONALS || 688 op == MAT_USE_HASH_TABLE) { 689 PLogInfo(A,"MatSetOption_MPIDense:Option ignored\n"); 690 } else if (op == MAT_COLUMN_ORIENTED) { 691 a->roworiented = 0; MatSetOption(a->A,op); 692 } else if (op == MAT_NO_NEW_DIAGONALS) { 693 SETERRQ(PETSC_ERR_SUP,0,"MAT_NO_NEW_DIAGONALS"); 694 } else { 695 SETERRQ(PETSC_ERR_SUP,0,"unknown option"); 696 } 697 PetscFunctionReturn(0); 698 } 699 700 #undef __FUNC__ 701 #define __FUNC__ "MatGetSize_MPIDense" 702 int MatGetSize_MPIDense(Mat A,int *m,int *n) 703 { 704 Mat_MPIDense *mat = (Mat_MPIDense *) A->data; 705 706 PetscFunctionBegin; 707 *m = mat->M; *n = mat->N; 708 PetscFunctionReturn(0); 709 } 710 711 #undef __FUNC__ 712 #define __FUNC__ "MatGetLocalSize_MPIDense" 713 int MatGetLocalSize_MPIDense(Mat A,int *m,int *n) 714 { 715 Mat_MPIDense *mat = (Mat_MPIDense *) A->data; 716 717 PetscFunctionBegin; 718 *m = mat->m; *n = mat->N; 719 PetscFunctionReturn(0); 720 } 721 722 #undef __FUNC__ 723 #define __FUNC__ "MatGetOwnershipRange_MPIDense" 724 int MatGetOwnershipRange_MPIDense(Mat A,int *m,int *n) 725 { 726 Mat_MPIDense *mat = (Mat_MPIDense *) A->data; 727 728 PetscFunctionBegin; 729 *m = mat->rstart; *n = mat->rend; 730 PetscFunctionReturn(0); 731 } 732 733 #undef __FUNC__ 734 #define __FUNC__ "MatGetRow_MPIDense" 735 int MatGetRow_MPIDense(Mat A,int row,int *nz,int **idx,Scalar **v) 736 { 737 Mat_MPIDense *mat = (Mat_MPIDense *) A->data; 738 int lrow, rstart = mat->rstart, rend = mat->rend,ierr; 739 740 PetscFunctionBegin; 741 if (row < rstart || row >= rend) SETERRQ(PETSC_ERR_SUP,0,"only local rows") 742 lrow = row - rstart; 743 ierr = MatGetRow(mat->A,lrow,nz,idx,v);CHKERRQ(ierr); 744 PetscFunctionReturn(0); 745 } 746 747 #undef __FUNC__ 748 #define __FUNC__ "MatRestoreRow_MPIDense" 749 int MatRestoreRow_MPIDense(Mat mat,int row,int *nz,int **idx,Scalar **v) 750 { 751 PetscFunctionBegin; 752 if (idx) PetscFree(*idx); 753 if (v) PetscFree(*v); 754 PetscFunctionReturn(0); 755 } 756 757 #undef __FUNC__ 758 #define __FUNC__ "MatNorm_MPIDense" 759 int MatNorm_MPIDense(Mat A,NormType type,double *norm) 760 { 761 Mat_MPIDense *mdn = (Mat_MPIDense *) A->data; 762 Mat_SeqDense *mat = (Mat_SeqDense*) mdn->A->data; 763 int ierr, i, j; 764 double sum = 0.0; 765 Scalar *v = mat->v; 766 767 PetscFunctionBegin; 768 if (mdn->size == 1) { 769 ierr = MatNorm(mdn->A,type,norm); CHKERRQ(ierr); 770 } else { 771 if (type == NORM_FROBENIUS) { 772 for (i=0; i<mat->n*mat->m; i++ ) { 773 #if defined(USE_PETSC_COMPLEX) 774 sum += real(conj(*v)*(*v)); v++; 775 #else 776 sum += (*v)*(*v); v++; 777 #endif 778 } 779 ierr = MPI_Allreduce(&sum,norm,1,MPI_DOUBLE,MPI_SUM,A->comm);CHKERRQ(ierr); 780 *norm = sqrt(*norm); 781 PLogFlops(2*mat->n*mat->m); 782 } else if (type == NORM_1) { 783 double *tmp, *tmp2; 784 tmp = (double *) PetscMalloc( 2*mdn->N*sizeof(double) ); CHKPTRQ(tmp); 785 tmp2 = tmp + mdn->N; 786 PetscMemzero(tmp,2*mdn->N*sizeof(double)); 787 *norm = 0.0; 788 v = mat->v; 789 for ( j=0; j<mat->n; j++ ) { 790 for ( i=0; i<mat->m; i++ ) { 791 tmp[j] += PetscAbsScalar(*v); v++; 792 } 793 } 794 ierr = MPI_Allreduce(tmp,tmp2,mdn->N,MPI_DOUBLE,MPI_SUM,A->comm);CHKERRQ(ierr); 795 for ( j=0; j<mdn->N; j++ ) { 796 if (tmp2[j] > *norm) *norm = tmp2[j]; 797 } 798 PetscFree(tmp); 799 PLogFlops(mat->n*mat->m); 800 } else if (type == NORM_INFINITY) { /* max row norm */ 801 double ntemp; 802 ierr = MatNorm(mdn->A,type,&ntemp); CHKERRQ(ierr); 803 ierr = MPI_Allreduce(&ntemp,norm,1,MPI_DOUBLE,MPI_MAX,A->comm);CHKERRQ(ierr); 804 } else { 805 SETERRQ(PETSC_ERR_SUP,0,"No support for two norm"); 806 } 807 } 808 PetscFunctionReturn(0); 809 } 810 811 #undef __FUNC__ 812 #define __FUNC__ "MatTranspose_MPIDense" 813 int MatTranspose_MPIDense(Mat A,Mat *matout) 814 { 815 Mat_MPIDense *a = (Mat_MPIDense *) A->data; 816 Mat_SeqDense *Aloc = (Mat_SeqDense *) a->A->data; 817 Mat B; 818 int M = a->M, N = a->N, m, n, *rwork, rstart = a->rstart; 819 int j, i, ierr; 820 Scalar *v; 821 822 PetscFunctionBegin; 823 if (matout == PETSC_NULL && M != N) { 824 SETERRQ(PETSC_ERR_SUP,0,"Supports square matrix only in-place"); 825 } 826 ierr = MatCreateMPIDense(A->comm,PETSC_DECIDE,PETSC_DECIDE,N,M,PETSC_NULL,&B);CHKERRQ(ierr); 827 828 m = Aloc->m; n = Aloc->n; v = Aloc->v; 829 rwork = (int *) PetscMalloc(n*sizeof(int)); CHKPTRQ(rwork); 830 for ( j=0; j<n; j++ ) { 831 for (i=0; i<m; i++) rwork[i] = rstart + i; 832 ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES); CHKERRQ(ierr); 833 v += m; 834 } 835 PetscFree(rwork); 836 ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 837 ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 838 if (matout != PETSC_NULL) { 839 *matout = B; 840 } else { 841 PetscOps *Abops; 842 struct _MatOps *Aops; 843 844 /* This isn't really an in-place transpose, but free data struct from a */ 845 PetscFree(a->rowners); 846 ierr = MatDestroy(a->A); CHKERRQ(ierr); 847 if (a->lvec) VecDestroy(a->lvec); 848 if (a->Mvctx) VecScatterDestroy(a->Mvctx); 849 PetscFree(a); 850 851 /* 852 This is horrible, horrible code. We need to keep the 853 A pointers for the bops and ops but copy everything 854 else from C. 855 */ 856 Abops = A->bops; 857 Aops = A->ops; 858 PetscMemcpy(A,B,sizeof(struct _p_Mat)); 859 A->bops = Abops; 860 A->ops = Aops; 861 862 PetscHeaderDestroy(B); 863 } 864 PetscFunctionReturn(0); 865 } 866 867 #include "pinclude/plapack.h" 868 #undef __FUNC__ 869 #define __FUNC__ "MatScale_MPIDense" 870 int MatScale_MPIDense(Scalar *alpha,Mat inA) 871 { 872 Mat_MPIDense *A = (Mat_MPIDense *) inA->data; 873 Mat_SeqDense *a = (Mat_SeqDense *) A->A->data; 874 int one = 1, nz; 875 876 PetscFunctionBegin; 877 nz = a->m*a->n; 878 BLscal_( &nz, alpha, a->v, &one ); 879 PLogFlops(nz); 880 PetscFunctionReturn(0); 881 } 882 883 static int MatConvertSameType_MPIDense(Mat,Mat *,int); 884 885 /* -------------------------------------------------------------------*/ 886 static struct _MatOps MatOps = {MatSetValues_MPIDense, 887 MatGetRow_MPIDense,MatRestoreRow_MPIDense, 888 MatMult_MPIDense,MatMultAdd_MPIDense, 889 MatMultTrans_MPIDense,MatMultTransAdd_MPIDense, 890 0,0, 891 0,0, 892 0,0, 893 0,MatTranspose_MPIDense, 894 MatGetInfo_MPIDense,0, 895 MatGetDiagonal_MPIDense,0,MatNorm_MPIDense, 896 MatAssemblyBegin_MPIDense,MatAssemblyEnd_MPIDense, 897 0, 898 MatSetOption_MPIDense,MatZeroEntries_MPIDense,MatZeroRows_MPIDense, 899 0,0, 900 0,0, 901 MatGetSize_MPIDense,MatGetLocalSize_MPIDense, 902 MatGetOwnershipRange_MPIDense, 903 0,0, MatGetArray_MPIDense, MatRestoreArray_MPIDense, 904 MatConvertSameType_MPIDense, 905 0,0,0,0,0, 906 0,0,MatGetValues_MPIDense,0,0,MatScale_MPIDense, 907 0,0,0,MatGetBlockSize_MPIDense}; 908 909 #undef __FUNC__ 910 #define __FUNC__ "MatCreateMPIDense" 911 /*@C 912 MatCreateMPIDense - Creates a sparse parallel matrix in dense format. 913 914 Input Parameters: 915 . comm - MPI communicator 916 . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 917 . n - number of local columns (or PETSC_DECIDE to have calculated 918 if N is given) 919 . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 920 . N - number of global columns (or PETSC_DECIDE to have calculated 921 if n is given) 922 . data - optional location of matrix data. Set data=PETSC_NULL for PETSc 923 to control all matrix memory allocation. 924 925 Output Parameter: 926 . A - the matrix 927 928 Collective on MPI_Comm 929 930 Notes: 931 This routine is collective over all processes in the communicator, comm. 932 933 The dense format is fully compatible with standard Fortran 77 934 storage by columns. 935 936 The data input variable is intended primarily for Fortran programmers 937 who wish to allocate their own matrix memory space. Most users should 938 set data=PETSC_NULL. 939 940 The user MUST specify either the local or global matrix dimensions 941 (possibly both). 942 943 Currently, the only parallel dense matrix decomposition is by rows, 944 so that n=N and each submatrix owns all of the global columns. 945 946 .keywords: matrix, dense, parallel 947 948 .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 949 @*/ 950 int MatCreateMPIDense(MPI_Comm comm,int m,int n,int M,int N,Scalar *data,Mat *A) 951 { 952 Mat mat; 953 Mat_MPIDense *a; 954 int ierr, i,flg; 955 956 PetscFunctionBegin; 957 /* Note: For now, when data is specified above, this assumes the user correctly 958 allocates the local dense storage space. We should add error checking. */ 959 960 *A = 0; 961 PetscHeaderCreate(mat,_p_Mat,struct _MatOps,MAT_COOKIE,MATMPIDENSE,comm,MatDestroy,MatView); 962 PLogObjectCreate(mat); 963 mat->data = (void *) (a = PetscNew(Mat_MPIDense)); CHKPTRQ(a); 964 PetscMemcpy(mat->ops,&MatOps,sizeof(struct _MatOps)); 965 mat->ops->destroy = MatDestroy_MPIDense; 966 mat->ops->view = MatView_MPIDense; 967 mat->factor = 0; 968 mat->mapping = 0; 969 970 a->factor = 0; 971 mat->insertmode = NOT_SET_VALUES; 972 MPI_Comm_rank(comm,&a->rank); 973 MPI_Comm_size(comm,&a->size); 974 975 if (M == PETSC_DECIDE) {ierr = MPI_Allreduce(&m,&M,1,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr);} 976 if (m == PETSC_DECIDE) {m = M/a->size + ((M % a->size) > a->rank);} 977 978 /* each row stores all columns */ 979 if (N == PETSC_DECIDE) N = n; 980 if (n == PETSC_DECIDE) {n = N/a->size + ((N % a->size) > a->rank);} 981 /* if (n != N) SETERRQ(PETSC_ERR_SUP,0,"For now, only n=N is supported"); */ 982 a->N = mat->N = N; 983 a->M = mat->M = M; 984 a->m = mat->m = m; 985 a->n = mat->n = n; 986 987 /* build local table of row and column ownerships */ 988 a->rowners = (int *) PetscMalloc(2*(a->size+2)*sizeof(int)); CHKPTRQ(a->rowners); 989 a->cowners = a->rowners + a->size + 1; 990 PLogObjectMemory(mat,2*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIDense)); 991 ierr = MPI_Allgather(&m,1,MPI_INT,a->rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 992 a->rowners[0] = 0; 993 for ( i=2; i<=a->size; i++ ) { 994 a->rowners[i] += a->rowners[i-1]; 995 } 996 a->rstart = a->rowners[a->rank]; 997 a->rend = a->rowners[a->rank+1]; 998 ierr = MPI_Allgather(&n,1,MPI_INT,a->cowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 999 a->cowners[0] = 0; 1000 for ( i=2; i<=a->size; i++ ) { 1001 a->cowners[i] += a->cowners[i-1]; 1002 } 1003 1004 ierr = MatCreateSeqDense(PETSC_COMM_SELF,m,N,data,&a->A); CHKERRQ(ierr); 1005 PLogObjectParent(mat,a->A); 1006 1007 /* build cache for off array entries formed */ 1008 ierr = StashBuild_Private(&a->stash); CHKERRQ(ierr); 1009 1010 /* stuff used for matrix vector multiply */ 1011 a->lvec = 0; 1012 a->Mvctx = 0; 1013 a->roworiented = 1; 1014 1015 *A = mat; 1016 ierr = OptionsHasName(PETSC_NULL,"-help",&flg); CHKERRQ(ierr); 1017 if (flg) { 1018 ierr = MatPrintHelp(mat); CHKERRQ(ierr); 1019 } 1020 PetscFunctionReturn(0); 1021 } 1022 1023 #undef __FUNC__ 1024 #define __FUNC__ "MatConvertSameType_MPIDense" 1025 static int MatConvertSameType_MPIDense(Mat A,Mat *newmat,int cpvalues) 1026 { 1027 Mat mat; 1028 Mat_MPIDense *a,*oldmat = (Mat_MPIDense *) A->data; 1029 int ierr; 1030 FactorCtx *factor; 1031 1032 PetscFunctionBegin; 1033 *newmat = 0; 1034 PetscHeaderCreate(mat,_p_Mat,struct _MatOps,MAT_COOKIE,MATMPIDENSE,A->comm,MatDestroy,MatView); 1035 PLogObjectCreate(mat); 1036 mat->data = (void *) (a = PetscNew(Mat_MPIDense)); CHKPTRQ(a); 1037 PetscMemcpy(mat->ops,&MatOps,sizeof(struct _MatOps)); 1038 mat->ops->destroy = MatDestroy_MPIDense; 1039 mat->ops->view = MatView_MPIDense; 1040 mat->factor = A->factor; 1041 mat->assembled = PETSC_TRUE; 1042 1043 a->m = mat->m = oldmat->m; 1044 a->n = mat->n = oldmat->n; 1045 a->M = mat->M = oldmat->M; 1046 a->N = mat->N = oldmat->N; 1047 if (oldmat->factor) { 1048 a->factor = (FactorCtx *) (factor = PetscNew(FactorCtx)); CHKPTRQ(factor); 1049 /* copy factor contents ... add this code! */ 1050 } else a->factor = 0; 1051 1052 a->rstart = oldmat->rstart; 1053 a->rend = oldmat->rend; 1054 a->size = oldmat->size; 1055 a->rank = oldmat->rank; 1056 mat->insertmode = NOT_SET_VALUES; 1057 1058 a->rowners = (int *) PetscMalloc((a->size+1)*sizeof(int)); CHKPTRQ(a->rowners); 1059 PLogObjectMemory(mat,(a->size+1)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIDense)); 1060 PetscMemcpy(a->rowners,oldmat->rowners,(a->size+1)*sizeof(int)); 1061 ierr = StashInitialize_Private(&a->stash); CHKERRQ(ierr); 1062 1063 ierr = VecDuplicate(oldmat->lvec,&a->lvec); CHKERRQ(ierr); 1064 PLogObjectParent(mat,a->lvec); 1065 ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx); CHKERRQ(ierr); 1066 PLogObjectParent(mat,a->Mvctx); 1067 ierr = MatConvert(oldmat->A,MATSAME,&a->A); CHKERRQ(ierr); 1068 PLogObjectParent(mat,a->A); 1069 *newmat = mat; 1070 PetscFunctionReturn(0); 1071 } 1072 1073 #include "sys.h" 1074 1075 #undef __FUNC__ 1076 #define __FUNC__ "MatLoad_MPIDense_DenseInFile" 1077 int MatLoad_MPIDense_DenseInFile(MPI_Comm comm,int fd,int M, int N, Mat *newmat) 1078 { 1079 int *rowners, i,size,rank,m,ierr,nz,j; 1080 Scalar *array,*vals,*vals_ptr; 1081 MPI_Status status; 1082 1083 PetscFunctionBegin; 1084 MPI_Comm_rank(comm,&rank); 1085 MPI_Comm_size(comm,&size); 1086 1087 /* determine ownership of all rows */ 1088 m = M/size + ((M % size) > rank); 1089 rowners = (int *) PetscMalloc((size+2)*sizeof(int)); CHKPTRQ(rowners); 1090 ierr = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 1091 rowners[0] = 0; 1092 for ( i=2; i<=size; i++ ) { 1093 rowners[i] += rowners[i-1]; 1094 } 1095 1096 ierr = MatCreateMPIDense(comm,m,PETSC_DECIDE,M,N,PETSC_NULL,newmat);CHKERRQ(ierr); 1097 ierr = MatGetArray(*newmat,&array); CHKERRQ(ierr); 1098 1099 if (!rank) { 1100 vals = (Scalar *) PetscMalloc( m*N*sizeof(Scalar) ); CHKPTRQ(vals); 1101 1102 /* read in my part of the matrix numerical values */ 1103 ierr = PetscBinaryRead(fd,vals,m*N,PETSC_SCALAR); CHKERRQ(ierr); 1104 1105 /* insert into matrix-by row (this is why cannot directly read into array */ 1106 vals_ptr = vals; 1107 for ( i=0; i<m; i++ ) { 1108 for ( j=0; j<N; j++ ) { 1109 array[i + j*m] = *vals_ptr++; 1110 } 1111 } 1112 1113 /* read in other processors and ship out */ 1114 for ( i=1; i<size; i++ ) { 1115 nz = (rowners[i+1] - rowners[i])*N; 1116 ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR); CHKERRQ(ierr); 1117 ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,(*newmat)->tag,comm);CHKERRQ(ierr); 1118 } 1119 } else { 1120 /* receive numeric values */ 1121 vals = (Scalar*) PetscMalloc( m*N*sizeof(Scalar) ); CHKPTRQ(vals); 1122 1123 /* receive message of values*/ 1124 ierr = MPI_Recv(vals,m*N,MPIU_SCALAR,0,(*newmat)->tag,comm,&status);CHKERRQ(ierr); 1125 1126 /* insert into matrix-by row (this is why cannot directly read into array */ 1127 vals_ptr = vals; 1128 for ( i=0; i<m; i++ ) { 1129 for ( j=0; j<N; j++ ) { 1130 array[i + j*m] = *vals_ptr++; 1131 } 1132 } 1133 } 1134 PetscFree(rowners); 1135 PetscFree(vals); 1136 ierr = MatAssemblyBegin(*newmat,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 1137 ierr = MatAssemblyEnd(*newmat,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 1138 PetscFunctionReturn(0); 1139 } 1140 1141 1142 #undef __FUNC__ 1143 #define __FUNC__ "MatLoad_MPIDense" 1144 int MatLoad_MPIDense(Viewer viewer,MatType type,Mat *newmat) 1145 { 1146 Mat A; 1147 Scalar *vals,*svals; 1148 MPI_Comm comm = ((PetscObject)viewer)->comm; 1149 MPI_Status status; 1150 int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,maxnz,*cols; 1151 int *ourlens,*sndcounts = 0,*procsnz = 0, *offlens,jj,*mycols,*smycols; 1152 int tag = ((PetscObject)viewer)->tag; 1153 int i, nz, ierr, j,rstart, rend, fd; 1154 1155 PetscFunctionBegin; 1156 MPI_Comm_size(comm,&size); MPI_Comm_rank(comm,&rank); 1157 if (!rank) { 1158 ierr = ViewerBinaryGetDescriptor(viewer,&fd); CHKERRQ(ierr); 1159 ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT); CHKERRQ(ierr); 1160 if (header[0] != MAT_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"not matrix object"); 1161 } 1162 1163 ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 1164 M = header[1]; N = header[2]; nz = header[3]; 1165 1166 /* 1167 Handle case where matrix is stored on disk as a dense matrix 1168 */ 1169 if (nz == MATRIX_BINARY_FORMAT_DENSE) { 1170 ierr = MatLoad_MPIDense_DenseInFile(comm,fd,M,N,newmat);CHKERRQ(ierr); 1171 PetscFunctionReturn(0); 1172 } 1173 1174 /* determine ownership of all rows */ 1175 m = M/size + ((M % size) > rank); 1176 rowners = (int *) PetscMalloc((size+2)*sizeof(int)); CHKPTRQ(rowners); 1177 ierr = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 1178 rowners[0] = 0; 1179 for ( i=2; i<=size; i++ ) { 1180 rowners[i] += rowners[i-1]; 1181 } 1182 rstart = rowners[rank]; 1183 rend = rowners[rank+1]; 1184 1185 /* distribute row lengths to all processors */ 1186 ourlens = (int*) PetscMalloc( 2*(rend-rstart)*sizeof(int) ); CHKPTRQ(ourlens); 1187 offlens = ourlens + (rend-rstart); 1188 if (!rank) { 1189 rowlengths = (int*) PetscMalloc( M*sizeof(int) ); CHKPTRQ(rowlengths); 1190 ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT); CHKERRQ(ierr); 1191 sndcounts = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(sndcounts); 1192 for ( i=0; i<size; i++ ) sndcounts[i] = rowners[i+1] - rowners[i]; 1193 ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPI_INT,ourlens,rend-rstart,MPI_INT,0,comm);CHKERRQ(ierr); 1194 PetscFree(sndcounts); 1195 } else { 1196 ierr = MPI_Scatterv(0,0,0,MPI_INT,ourlens,rend-rstart,MPI_INT, 0,comm);CHKERRQ(ierr); 1197 } 1198 1199 if (!rank) { 1200 /* calculate the number of nonzeros on each processor */ 1201 procsnz = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(procsnz); 1202 PetscMemzero(procsnz,size*sizeof(int)); 1203 for ( i=0; i<size; i++ ) { 1204 for ( j=rowners[i]; j< rowners[i+1]; j++ ) { 1205 procsnz[i] += rowlengths[j]; 1206 } 1207 } 1208 PetscFree(rowlengths); 1209 1210 /* determine max buffer needed and allocate it */ 1211 maxnz = 0; 1212 for ( i=0; i<size; i++ ) { 1213 maxnz = PetscMax(maxnz,procsnz[i]); 1214 } 1215 cols = (int *) PetscMalloc( maxnz*sizeof(int) ); CHKPTRQ(cols); 1216 1217 /* read in my part of the matrix column indices */ 1218 nz = procsnz[0]; 1219 mycols = (int *) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(mycols); 1220 ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT); CHKERRQ(ierr); 1221 1222 /* read in every one elses and ship off */ 1223 for ( i=1; i<size; i++ ) { 1224 nz = procsnz[i]; 1225 ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT); CHKERRQ(ierr); 1226 ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 1227 } 1228 PetscFree(cols); 1229 } else { 1230 /* determine buffer space needed for message */ 1231 nz = 0; 1232 for ( i=0; i<m; i++ ) { 1233 nz += ourlens[i]; 1234 } 1235 mycols = (int*) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(mycols); 1236 1237 /* receive message of column indices*/ 1238 ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 1239 ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 1240 if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file"); 1241 } 1242 1243 /* loop over local rows, determining number of off diagonal entries */ 1244 PetscMemzero(offlens,m*sizeof(int)); 1245 jj = 0; 1246 for ( i=0; i<m; i++ ) { 1247 for ( j=0; j<ourlens[i]; j++ ) { 1248 if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++; 1249 jj++; 1250 } 1251 } 1252 1253 /* create our matrix */ 1254 for ( i=0; i<m; i++ ) { 1255 ourlens[i] -= offlens[i]; 1256 } 1257 ierr = MatCreateMPIDense(comm,m,PETSC_DECIDE,M,N,PETSC_NULL,newmat);CHKERRQ(ierr); 1258 A = *newmat; 1259 for ( i=0; i<m; i++ ) { 1260 ourlens[i] += offlens[i]; 1261 } 1262 1263 if (!rank) { 1264 vals = (Scalar *) PetscMalloc( maxnz*sizeof(Scalar) ); CHKPTRQ(vals); 1265 1266 /* read in my part of the matrix numerical values */ 1267 nz = procsnz[0]; 1268 ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR); CHKERRQ(ierr); 1269 1270 /* insert into matrix */ 1271 jj = rstart; 1272 smycols = mycols; 1273 svals = vals; 1274 for ( i=0; i<m; i++ ) { 1275 ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 1276 smycols += ourlens[i]; 1277 svals += ourlens[i]; 1278 jj++; 1279 } 1280 1281 /* read in other processors and ship out */ 1282 for ( i=1; i<size; i++ ) { 1283 nz = procsnz[i]; 1284 ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR); CHKERRQ(ierr); 1285 ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 1286 } 1287 PetscFree(procsnz); 1288 } else { 1289 /* receive numeric values */ 1290 vals = (Scalar*) PetscMalloc( nz*sizeof(Scalar) ); CHKPTRQ(vals); 1291 1292 /* receive message of values*/ 1293 ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 1294 ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 1295 if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file"); 1296 1297 /* insert into matrix */ 1298 jj = rstart; 1299 smycols = mycols; 1300 svals = vals; 1301 for ( i=0; i<m; i++ ) { 1302 ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 1303 smycols += ourlens[i]; 1304 svals += ourlens[i]; 1305 jj++; 1306 } 1307 } 1308 PetscFree(ourlens); PetscFree(vals); PetscFree(mycols); PetscFree(rowners); 1309 1310 ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 1311 ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 1312 PetscFunctionReturn(0); 1313 } 1314 1315 1316 1317 1318 1319