xref: /petsc/src/mat/impls/dense/mpi/mpidense.c (revision 82bf6240e2c962f3f106f2e53a46e3db58a7d347)
1 #ifdef PETSC_RCS_HEADER
2 static char vcid[] = "$Id: mpidense.c,v 1.78 1998/01/06 20:10:12 bsmith Exp balay $";
3 #endif
4 
5 /*
6    Basic functions for basic parallel dense matrices.
7 */
8 
9 #include "src/mat/impls/dense/mpi/mpidense.h"
10 #include "src/vec/vecimpl.h"
11 
12 #undef __FUNC__
13 #define __FUNC__ "MatSetValues_MPIDense"
14 int MatSetValues_MPIDense(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v,InsertMode addv)
15 {
16   Mat_MPIDense *A = (Mat_MPIDense *) mat->data;
17   int          ierr, i, j, rstart = A->rstart, rend = A->rend, row;
18   int          roworiented = A->roworiented;
19 
20   PetscFunctionBegin;
21   for ( i=0; i<m; i++ ) {
22     if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row");
23     if (idxm[i] >= A->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large");
24     if (idxm[i] >= rstart && idxm[i] < rend) {
25       row = idxm[i] - rstart;
26       if (roworiented) {
27         ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv); CHKERRQ(ierr);
28       } else {
29         for ( j=0; j<n; j++ ) {
30           if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column");
31           if (idxn[j] >= A->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large");
32           ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv); CHKERRQ(ierr);
33         }
34       }
35     } else {
36       if (roworiented) {
37         ierr = StashValues_Private(&A->stash,idxm[i],n,idxn,v+i*n,addv); CHKERRQ(ierr);
38       } else { /* must stash each seperately */
39         row = idxm[i];
40         for ( j=0; j<n; j++ ) {
41           ierr = StashValues_Private(&A->stash,row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr);
42         }
43       }
44     }
45   }
46   PetscFunctionReturn(0);
47 }
48 
49 #undef __FUNC__
50 #define __FUNC__ "MatGetValues_MPIDense"
51 int MatGetValues_MPIDense(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v)
52 {
53   Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data;
54   int          ierr, i, j, rstart = mdn->rstart, rend = mdn->rend, row;
55 
56   PetscFunctionBegin;
57   for ( i=0; i<m; i++ ) {
58     if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row");
59     if (idxm[i] >= mdn->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large");
60     if (idxm[i] >= rstart && idxm[i] < rend) {
61       row = idxm[i] - rstart;
62       for ( j=0; j<n; j++ ) {
63         if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column");
64         if (idxn[j] >= mdn->N) {
65           SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large");
66         }
67         ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j); CHKERRQ(ierr);
68       }
69     } else {
70       SETERRQ(PETSC_ERR_SUP,0,"Only local values currently supported");
71     }
72   }
73   PetscFunctionReturn(0);
74 }
75 
76 #undef __FUNC__
77 #define __FUNC__ "MatGetArray_MPIDense"
78 int MatGetArray_MPIDense(Mat A,Scalar **array)
79 {
80   Mat_MPIDense *a = (Mat_MPIDense *) A->data;
81   int          ierr;
82 
83   PetscFunctionBegin;
84   ierr = MatGetArray(a->A,array); CHKERRQ(ierr);
85   PetscFunctionReturn(0);
86 }
87 
88 #undef __FUNC__
89 #define __FUNC__ "MatRestoreArray_MPIDense"
90 int MatRestoreArray_MPIDense(Mat A,Scalar **array)
91 {
92   PetscFunctionBegin;
93   PetscFunctionReturn(0);
94 }
95 
96 #undef __FUNC__
97 #define __FUNC__ "MatAssemblyBegin_MPIDense"
98 int MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode)
99 {
100   Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data;
101   MPI_Comm     comm = mat->comm;
102   int          size = mdn->size, *owners = mdn->rowners, rank = mdn->rank;
103   int          *nprocs,i,j,idx,*procs,nsends,nreceives,nmax,*work;
104   int          tag = mat->tag, *owner,*starts,count,ierr;
105   InsertMode   addv;
106   MPI_Request  *send_waits,*recv_waits;
107   Scalar       *rvalues,*svalues;
108 
109   PetscFunctionBegin;
110   /* make sure all processors are either in INSERTMODE or ADDMODE */
111   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,comm);CHKERRQ(ierr);
112   if (addv == (ADD_VALUES|INSERT_VALUES)) {
113     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Cannot mix adds/inserts on different procs");
114   }
115   mat->insertmode = addv; /* in case this processor had no cache */
116 
117   /*  first count number of contributors to each processor */
118   nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs);
119   PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size;
120   owner = (int *) PetscMalloc( (mdn->stash.n+1)*sizeof(int) ); CHKPTRQ(owner);
121   for ( i=0; i<mdn->stash.n; i++ ) {
122     idx = mdn->stash.idx[i];
123     for ( j=0; j<size; j++ ) {
124       if (idx >= owners[j] && idx < owners[j+1]) {
125         nprocs[j]++; procs[j] = 1; owner[i] = j; break;
126       }
127     }
128   }
129   nsends = 0;  for ( i=0; i<size; i++ ) { nsends += procs[i];}
130 
131   /* inform other processors of number of messages and max length*/
132   work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work);
133   ierr = MPI_Allreduce(procs,work,size,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr);
134   nreceives = work[rank];
135   if (nreceives > size) SETERRQ(PETSC_ERR_PLIB,0,"Internal PETSc error");
136   ierr = MPI_Allreduce(nprocs,work,size,MPI_INT,MPI_MAX,comm);CHKERRQ(ierr);
137   nmax = work[rank];
138   PetscFree(work);
139 
140   /* post receives:
141        1) each message will consist of ordered pairs
142      (global index,value) we store the global index as a double
143      to simplify the message passing.
144        2) since we don't know how long each individual message is we
145      allocate the largest needed buffer for each receive. Potentially
146      this is a lot of wasted space.
147 
148        This could be done better.
149   */
150   rvalues = (Scalar *) PetscMalloc(3*(nreceives+1)*(nmax+1)*sizeof(Scalar));CHKPTRQ(rvalues);
151   recv_waits = (MPI_Request *) PetscMalloc((nreceives+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits);
152   for ( i=0; i<nreceives; i++ ) {
153     ierr = MPI_Irecv(rvalues+3*nmax*i,3*nmax,MPIU_SCALAR,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
154   }
155 
156   /* do sends:
157       1) starts[i] gives the starting index in svalues for stuff going to
158          the ith processor
159   */
160   svalues = (Scalar *) PetscMalloc( 3*(mdn->stash.n+1)*sizeof(Scalar));CHKPTRQ(svalues);
161   send_waits = (MPI_Request *) PetscMalloc((nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits);
162   starts = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(starts);
163   starts[0] = 0;
164   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
165   for ( i=0; i<mdn->stash.n; i++ ) {
166     svalues[3*starts[owner[i]]]       = (Scalar)  mdn->stash.idx[i];
167     svalues[3*starts[owner[i]]+1]     = (Scalar)  mdn->stash.idy[i];
168     svalues[3*(starts[owner[i]]++)+2] =  mdn->stash.array[i];
169   }
170   PetscFree(owner);
171   starts[0] = 0;
172   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
173   count = 0;
174   for ( i=0; i<size; i++ ) {
175     if (procs[i]) {
176       ierr = MPI_Isend(svalues+3*starts[i],3*nprocs[i],MPIU_SCALAR,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
177     }
178   }
179   PetscFree(starts); PetscFree(nprocs);
180 
181   /* Free cache space */
182   PLogInfo(mat,"MatAssemblyBegin_MPIDense:Number of off-processor values %d\n",mdn->stash.n);
183   ierr = StashDestroy_Private(&mdn->stash); CHKERRQ(ierr);
184 
185   mdn->svalues    = svalues;    mdn->rvalues = rvalues;
186   mdn->nsends     = nsends;     mdn->nrecvs = nreceives;
187   mdn->send_waits = send_waits; mdn->recv_waits = recv_waits;
188   mdn->rmax       = nmax;
189 
190   PetscFunctionReturn(0);
191 }
192 extern int MatSetUpMultiply_MPIDense(Mat);
193 
194 #undef __FUNC__
195 #define __FUNC__ "MatAssemblyEnd_MPIDense"
196 int MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode)
197 {
198   Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data;
199   MPI_Status   *send_status,recv_status;
200   int          imdex, nrecvs=mdn->nrecvs, count=nrecvs, i, n, ierr, row, col;
201   Scalar       *values,val;
202   InsertMode   addv = mat->insertmode;
203 
204   PetscFunctionBegin;
205   /*  wait on receives */
206   while (count) {
207     ierr = MPI_Waitany(nrecvs,mdn->recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
208     /* unpack receives into our local space */
209     values = mdn->rvalues + 3*imdex*mdn->rmax;
210     ierr = MPI_Get_count(&recv_status,MPIU_SCALAR,&n);CHKERRQ(ierr);
211     n = n/3;
212     for ( i=0; i<n; i++ ) {
213       row = (int) PetscReal(values[3*i]) - mdn->rstart;
214       col = (int) PetscReal(values[3*i+1]);
215       val = values[3*i+2];
216       if (col >= 0 && col < mdn->N) {
217         MatSetValues(mdn->A,1,&row,1,&col,&val,addv);
218       }
219       else {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Invalid column");}
220     }
221     count--;
222   }
223   PetscFree(mdn->recv_waits); PetscFree(mdn->rvalues);
224 
225   /* wait on sends */
226   if (mdn->nsends) {
227     send_status = (MPI_Status *) PetscMalloc(mdn->nsends*sizeof(MPI_Status));CHKPTRQ(send_status);
228     ierr        = MPI_Waitall(mdn->nsends,mdn->send_waits,send_status);CHKERRQ(ierr);
229     PetscFree(send_status);
230   }
231   PetscFree(mdn->send_waits); PetscFree(mdn->svalues);
232 
233   ierr = MatAssemblyBegin(mdn->A,mode); CHKERRQ(ierr);
234   ierr = MatAssemblyEnd(mdn->A,mode); CHKERRQ(ierr);
235 
236   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
237     ierr = MatSetUpMultiply_MPIDense(mat); CHKERRQ(ierr);
238   }
239   PetscFunctionReturn(0);
240 }
241 
242 #undef __FUNC__
243 #define __FUNC__ "MatZeroEntries_MPIDense"
244 int MatZeroEntries_MPIDense(Mat A)
245 {
246   int          ierr;
247   Mat_MPIDense *l = (Mat_MPIDense *) A->data;
248 
249   PetscFunctionBegin;
250   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
251   PetscFunctionReturn(0);
252 }
253 
254 #undef __FUNC__
255 #define __FUNC__ "MatGetBlockSize_MPIDense"
256 int MatGetBlockSize_MPIDense(Mat A,int *bs)
257 {
258   PetscFunctionBegin;
259   *bs = 1;
260   PetscFunctionReturn(0);
261 }
262 
263 /* the code does not do the diagonal entries correctly unless the
264    matrix is square and the column and row owerships are identical.
265    This is a BUG. The only way to fix it seems to be to access
266    mdn->A and mdn->B directly and not through the MatZeroRows()
267    routine.
268 */
269 #undef __FUNC__
270 #define __FUNC__ "MatZeroRows_MPIDense"
271 int MatZeroRows_MPIDense(Mat A,IS is,Scalar *diag)
272 {
273   Mat_MPIDense   *l = (Mat_MPIDense *) A->data;
274   int            i,ierr,N, *rows,*owners = l->rowners,size = l->size;
275   int            *procs,*nprocs,j,found,idx,nsends,*work;
276   int            nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank;
277   int            *rvalues,tag = A->tag,count,base,slen,n,*source;
278   int            *lens,imdex,*lrows,*values;
279   MPI_Comm       comm = A->comm;
280   MPI_Request    *send_waits,*recv_waits;
281   MPI_Status     recv_status,*send_status;
282   IS             istmp;
283 
284   PetscFunctionBegin;
285   ierr = ISGetSize(is,&N); CHKERRQ(ierr);
286   ierr = ISGetIndices(is,&rows); CHKERRQ(ierr);
287 
288   /*  first count number of contributors to each processor */
289   nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs);
290   PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size;
291   owner = (int *) PetscMalloc((N+1)*sizeof(int)); CHKPTRQ(owner); /* see note*/
292   for ( i=0; i<N; i++ ) {
293     idx = rows[i];
294     found = 0;
295     for ( j=0; j<size; j++ ) {
296       if (idx >= owners[j] && idx < owners[j+1]) {
297         nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break;
298       }
299     }
300     if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Index out of range");
301   }
302   nsends = 0;  for ( i=0; i<size; i++ ) { nsends += procs[i];}
303 
304   /* inform other processors of number of messages and max length*/
305   work   = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work);
306   ierr   = MPI_Allreduce( procs, work,size,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr);
307   nrecvs = work[rank];
308   ierr   = MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);CHKERRQ(ierr);
309   nmax   = work[rank];
310   PetscFree(work);
311 
312   /* post receives:   */
313   rvalues    = (int *) PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int));CHKPTRQ(rvalues);
314   recv_waits = (MPI_Request *) PetscMalloc((nrecvs+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits);
315   for ( i=0; i<nrecvs; i++ ) {
316     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
317   }
318 
319   /* do sends:
320       1) starts[i] gives the starting index in svalues for stuff going to
321          the ith processor
322   */
323   svalues    = (int *) PetscMalloc( (N+1)*sizeof(int) ); CHKPTRQ(svalues);
324   send_waits = (MPI_Request *) PetscMalloc((nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits);
325   starts     = (int *) PetscMalloc( (size+1)*sizeof(int) ); CHKPTRQ(starts);
326   starts[0]  = 0;
327   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
328   for ( i=0; i<N; i++ ) {
329     svalues[starts[owner[i]]++] = rows[i];
330   }
331   ISRestoreIndices(is,&rows);
332 
333   starts[0] = 0;
334   for ( i=1; i<size+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
335   count = 0;
336   for ( i=0; i<size; i++ ) {
337     if (procs[i]) {
338       ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
339     }
340   }
341   PetscFree(starts);
342 
343   base = owners[rank];
344 
345   /*  wait on receives */
346   lens   = (int *) PetscMalloc( 2*(nrecvs+1)*sizeof(int) ); CHKPTRQ(lens);
347   source = lens + nrecvs;
348   count  = nrecvs; slen = 0;
349   while (count) {
350     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
351     /* unpack receives into our local space */
352     ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr);
353     source[imdex]  = recv_status.MPI_SOURCE;
354     lens[imdex]  = n;
355     slen += n;
356     count--;
357   }
358   PetscFree(recv_waits);
359 
360   /* move the data into the send scatter */
361   lrows = (int *) PetscMalloc( (slen+1)*sizeof(int) ); CHKPTRQ(lrows);
362   count = 0;
363   for ( i=0; i<nrecvs; i++ ) {
364     values = rvalues + i*nmax;
365     for ( j=0; j<lens[i]; j++ ) {
366       lrows[count++] = values[j] - base;
367     }
368   }
369   PetscFree(rvalues); PetscFree(lens);
370   PetscFree(owner); PetscFree(nprocs);
371 
372   /* actually zap the local rows */
373   ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr);
374   PLogObjectParent(A,istmp);
375   PetscFree(lrows);
376   ierr = MatZeroRows(l->A,istmp,diag); CHKERRQ(ierr);
377   ierr = ISDestroy(istmp); CHKERRQ(ierr);
378 
379   /* wait on sends */
380   if (nsends) {
381     send_status = (MPI_Status *) PetscMalloc(nsends*sizeof(MPI_Status));CHKPTRQ(send_status);
382     ierr        = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
383     PetscFree(send_status);
384   }
385   PetscFree(send_waits); PetscFree(svalues);
386 
387   PetscFunctionReturn(0);
388 }
389 
390 #undef __FUNC__
391 #define __FUNC__ "MatMult_MPIDense"
392 int MatMult_MPIDense(Mat mat,Vec xx,Vec yy)
393 {
394   Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data;
395   int          ierr;
396 
397   PetscFunctionBegin;
398   ierr = VecScatterBegin(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr);
399   ierr = VecScatterEnd(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr);
400   ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy); CHKERRQ(ierr);
401   PetscFunctionReturn(0);
402 }
403 
404 #undef __FUNC__
405 #define __FUNC__ "MatMultAdd_MPIDense"
406 int MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz)
407 {
408   Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data;
409   int          ierr;
410 
411   PetscFunctionBegin;
412   ierr = VecScatterBegin(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr);
413   ierr = VecScatterEnd(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr);
414   ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz); CHKERRQ(ierr);
415   PetscFunctionReturn(0);
416 }
417 
418 #undef __FUNC__
419 #define __FUNC__ "MatMultTrans_MPIDense"
420 int MatMultTrans_MPIDense(Mat A,Vec xx,Vec yy)
421 {
422   Mat_MPIDense *a = (Mat_MPIDense *) A->data;
423   int          ierr;
424   Scalar       zero = 0.0;
425 
426   PetscFunctionBegin;
427   ierr = VecSet(&zero,yy); CHKERRQ(ierr);
428   ierr = MatMultTrans_SeqDense(a->A,xx,a->lvec); CHKERRQ(ierr);
429   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr);
430   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr);
431   PetscFunctionReturn(0);
432 }
433 
434 #undef __FUNC__
435 #define __FUNC__ "MatMultTransAdd_MPIDense"
436 int MatMultTransAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz)
437 {
438   Mat_MPIDense *a = (Mat_MPIDense *) A->data;
439   int          ierr;
440 
441   PetscFunctionBegin;
442   ierr = VecCopy(yy,zz); CHKERRQ(ierr);
443   ierr = MatMultTrans_SeqDense(a->A,xx,a->lvec); CHKERRQ(ierr);
444   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr);
445   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr);
446   PetscFunctionReturn(0);
447 }
448 
449 #undef __FUNC__
450 #define __FUNC__ "MatGetDiagonal_MPIDense"
451 int MatGetDiagonal_MPIDense(Mat A,Vec v)
452 {
453   Mat_MPIDense *a = (Mat_MPIDense *) A->data;
454   Mat_SeqDense *aloc = (Mat_SeqDense *) a->A->data;
455   int          ierr, len, i, n, m = a->m, radd;
456   Scalar       *x, zero = 0.0;
457 
458   PetscFunctionBegin;
459   VecSet(&zero,v);
460   ierr = VecGetArray(v,&x); CHKERRQ(ierr);
461   ierr = VecGetSize(v,&n); CHKERRQ(ierr);
462   if (n != a->M) SETERRQ(PETSC_ERR_ARG_SIZ,0,"Nonconforming mat and vec");
463   len = PetscMin(aloc->m,aloc->n);
464   radd = a->rstart*m;
465   for ( i=0; i<len; i++ ) {
466     x[i] = aloc->v[radd + i*m + i];
467   }
468   PetscFunctionReturn(0);
469 }
470 
471 #undef __FUNC__
472 #define __FUNC__ "MatDestroy_MPIDense"
473 int MatDestroy_MPIDense(PetscObject obj)
474 {
475   Mat          mat = (Mat) obj;
476   Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data;
477   int          ierr;
478 
479   PetscFunctionBegin;
480 #if defined(USE_PETSC_LOG)
481   PLogObjectState(obj,"Rows=%d, Cols=%d",mdn->M,mdn->N);
482 #endif
483   PetscFree(mdn->rowners);
484   ierr = MatDestroy(mdn->A); CHKERRQ(ierr);
485   if (mdn->lvec)   VecDestroy(mdn->lvec);
486   if (mdn->Mvctx)  VecScatterDestroy(mdn->Mvctx);
487   if (mdn->factor) {
488     if (mdn->factor->temp)   PetscFree(mdn->factor->temp);
489     if (mdn->factor->tag)    PetscFree(mdn->factor->tag);
490     if (mdn->factor->pivots) PetscFree(mdn->factor->pivots);
491     PetscFree(mdn->factor);
492   }
493   PetscFree(mdn);
494   if (mat->mapping) {
495     ierr = ISLocalToGlobalMappingDestroy(mat->mapping); CHKERRQ(ierr);
496   }
497   PLogObjectDestroy(mat);
498   PetscHeaderDestroy(mat);
499   PetscFunctionReturn(0);
500 }
501 
502 #include "pinclude/pviewer.h"
503 
504 #undef __FUNC__
505 #define __FUNC__ "MatView_MPIDense_Binary"
506 static int MatView_MPIDense_Binary(Mat mat,Viewer viewer)
507 {
508   Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data;
509   int          ierr;
510 
511   PetscFunctionBegin;
512   if (mdn->size == 1) {
513     ierr = MatView(mdn->A,viewer); CHKERRQ(ierr);
514   }
515   else SETERRQ(PETSC_ERR_SUP,0,"Only uniprocessor output supported");
516   PetscFunctionReturn(0);
517 }
518 
519 #undef __FUNC__
520 #define __FUNC__ "MatView_MPIDense_ASCII"
521 static int MatView_MPIDense_ASCII(Mat mat,Viewer viewer)
522 {
523   Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data;
524   int          ierr, format;
525   FILE         *fd;
526   ViewerType   vtype;
527 
528   PetscFunctionBegin;
529   ierr = ViewerGetType(viewer,&vtype);CHKERRQ(ierr);
530   ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr);
531   ierr = ViewerGetFormat(viewer,&format);
532   if (format == VIEWER_FORMAT_ASCII_INFO_LONG) {
533     int rank;
534     MatInfo info;
535     MPI_Comm_rank(mat->comm,&rank);
536     ierr = MatGetInfo(mat,MAT_LOCAL,&info);
537     PetscSequentialPhaseBegin(mat->comm,1);
538       fprintf(fd,"  [%d] local rows %d nz %d nz alloced %d mem %d \n",rank,mdn->m,
539          (int)info.nz_used,(int)info.nz_allocated,(int)info.memory);
540       fflush(fd);
541     PetscSequentialPhaseEnd(mat->comm,1);
542     ierr = VecScatterView(mdn->Mvctx,viewer); CHKERRQ(ierr);
543     PetscFunctionReturn(0);
544   }
545   else if (format == VIEWER_FORMAT_ASCII_INFO) {
546     PetscFunctionReturn(0);
547   }
548   if (vtype == ASCII_FILE_VIEWER) {
549     PetscSequentialPhaseBegin(mat->comm,1);
550     fprintf(fd,"[%d] rows %d starts %d ends %d cols %d\n",
551              mdn->rank,mdn->m,mdn->rstart,mdn->rend,mdn->n);
552     ierr = MatView(mdn->A,viewer); CHKERRQ(ierr);
553     fflush(fd);
554     PetscSequentialPhaseEnd(mat->comm,1);
555   } else {
556     int size = mdn->size, rank = mdn->rank;
557     if (size == 1) {
558       ierr = MatView(mdn->A,viewer); CHKERRQ(ierr);
559     } else {
560       /* assemble the entire matrix onto first processor. */
561       Mat          A;
562       int          M = mdn->M, N = mdn->N,m,row,i, nz, *cols;
563       Scalar       *vals;
564       Mat_SeqDense *Amdn = (Mat_SeqDense*) mdn->A->data;
565 
566       if (!rank) {
567         ierr = MatCreateMPIDense(mat->comm,M,N,M,N,PETSC_NULL,&A); CHKERRQ(ierr);
568       } else {
569         ierr = MatCreateMPIDense(mat->comm,0,N,M,N,PETSC_NULL,&A); CHKERRQ(ierr);
570       }
571       PLogObjectParent(mat,A);
572 
573       /* Copy the matrix ... This isn't the most efficient means,
574          but it's quick for now */
575       row = mdn->rstart; m = Amdn->m;
576       for ( i=0; i<m; i++ ) {
577         ierr = MatGetRow(mat,row,&nz,&cols,&vals); CHKERRQ(ierr);
578         ierr = MatSetValues(A,1,&row,nz,cols,vals,INSERT_VALUES); CHKERRQ(ierr);
579         ierr = MatRestoreRow(mat,row,&nz,&cols,&vals); CHKERRQ(ierr);
580         row++;
581       }
582 
583       ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
584       ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
585       if (!rank) {
586         ierr = MatView(((Mat_MPIDense*)(A->data))->A,viewer); CHKERRQ(ierr);
587       }
588       ierr = MatDestroy(A); CHKERRQ(ierr);
589     }
590   }
591   PetscFunctionReturn(0);
592 }
593 
594 #undef __FUNC__
595 #define __FUNC__ "MatView_MPIDense"
596 int MatView_MPIDense(PetscObject obj,Viewer viewer)
597 {
598   Mat          mat = (Mat) obj;
599   int          ierr;
600   ViewerType   vtype;
601 
602   ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr);
603   if (vtype == ASCII_FILE_VIEWER) {
604     ierr = MatView_MPIDense_ASCII(mat,viewer); CHKERRQ(ierr);
605   } else if (vtype == ASCII_FILES_VIEWER) {
606     ierr = MatView_MPIDense_ASCII(mat,viewer); CHKERRQ(ierr);
607   } else if (vtype == BINARY_FILE_VIEWER) {
608     ierr = MatView_MPIDense_Binary(mat,viewer);CHKERRQ(ierr);
609   }
610   PetscFunctionReturn(0);
611 }
612 
613 #undef __FUNC__
614 #define __FUNC__ "MatGetInfo_MPIDense"
615 int MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info)
616 {
617   Mat_MPIDense *mat = (Mat_MPIDense *) A->data;
618   Mat          mdn = mat->A;
619   int          ierr;
620   double       isend[5], irecv[5];
621 
622   PetscFunctionBegin;
623   info->rows_global    = (double)mat->M;
624   info->columns_global = (double)mat->N;
625   info->rows_local     = (double)mat->m;
626   info->columns_local  = (double)mat->N;
627   info->block_size     = 1.0;
628   ierr = MatGetInfo(mdn,MAT_LOCAL,info); CHKERRQ(ierr);
629   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
630   isend[3] = info->memory;  isend[4] = info->mallocs;
631   if (flag == MAT_LOCAL) {
632     info->nz_used      = isend[0];
633     info->nz_allocated = isend[1];
634     info->nz_unneeded  = isend[2];
635     info->memory       = isend[3];
636     info->mallocs      = isend[4];
637   } else if (flag == MAT_GLOBAL_MAX) {
638     ierr = MPI_Allreduce(isend,irecv,5,MPI_INT,MPI_MAX,A->comm);CHKERRQ(ierr);
639     info->nz_used      = irecv[0];
640     info->nz_allocated = irecv[1];
641     info->nz_unneeded  = irecv[2];
642     info->memory       = irecv[3];
643     info->mallocs      = irecv[4];
644   } else if (flag == MAT_GLOBAL_SUM) {
645     ierr = MPI_Allreduce(isend,irecv,5,MPI_INT,MPI_SUM,A->comm);CHKERRQ(ierr);
646     info->nz_used      = irecv[0];
647     info->nz_allocated = irecv[1];
648     info->nz_unneeded  = irecv[2];
649     info->memory       = irecv[3];
650     info->mallocs      = irecv[4];
651   }
652   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
653   info->fill_ratio_needed = 0;
654   info->factor_mallocs    = 0;
655   PetscFunctionReturn(0);
656 }
657 
658 /* extern int MatLUFactorSymbolic_MPIDense(Mat,IS,IS,double,Mat*);
659    extern int MatLUFactorNumeric_MPIDense(Mat,Mat*);
660    extern int MatLUFactor_MPIDense(Mat,IS,IS,double);
661    extern int MatSolve_MPIDense(Mat,Vec,Vec);
662    extern int MatSolveAdd_MPIDense(Mat,Vec,Vec,Vec);
663    extern int MatSolveTrans_MPIDense(Mat,Vec,Vec);
664    extern int MatSolveTransAdd_MPIDense(Mat,Vec,Vec,Vec); */
665 
666 #undef __FUNC__
667 #define __FUNC__ "MatSetOption_MPIDense"
668 int MatSetOption_MPIDense(Mat A,MatOption op)
669 {
670   Mat_MPIDense *a = (Mat_MPIDense *) A->data;
671 
672   PetscFunctionBegin;
673   if (op == MAT_NO_NEW_NONZERO_LOCATIONS ||
674       op == MAT_YES_NEW_NONZERO_LOCATIONS ||
675       op == MAT_NEW_NONZERO_LOCATION_ERROR ||
676       op == MAT_NEW_NONZERO_ALLOCATION_ERROR ||
677       op == MAT_COLUMNS_SORTED ||
678       op == MAT_COLUMNS_UNSORTED) {
679         MatSetOption(a->A,op);
680   } else if (op == MAT_ROW_ORIENTED) {
681         a->roworiented = 1;
682         MatSetOption(a->A,op);
683   } else if (op == MAT_ROWS_SORTED ||
684              op == MAT_ROWS_UNSORTED ||
685              op == MAT_SYMMETRIC ||
686              op == MAT_STRUCTURALLY_SYMMETRIC ||
687              op == MAT_YES_NEW_DIAGONALS ||
688              op == MAT_USE_HASH_TABLE) {
689     PLogInfo(A,"MatSetOption_MPIDense:Option ignored\n");
690   } else if (op == MAT_COLUMN_ORIENTED) {
691     a->roworiented = 0; MatSetOption(a->A,op);
692   } else if (op == MAT_NO_NEW_DIAGONALS) {
693     SETERRQ(PETSC_ERR_SUP,0,"MAT_NO_NEW_DIAGONALS");
694   } else {
695     SETERRQ(PETSC_ERR_SUP,0,"unknown option");
696   }
697   PetscFunctionReturn(0);
698 }
699 
700 #undef __FUNC__
701 #define __FUNC__ "MatGetSize_MPIDense"
702 int MatGetSize_MPIDense(Mat A,int *m,int *n)
703 {
704   Mat_MPIDense *mat = (Mat_MPIDense *) A->data;
705 
706   PetscFunctionBegin;
707   *m = mat->M; *n = mat->N;
708   PetscFunctionReturn(0);
709 }
710 
711 #undef __FUNC__
712 #define __FUNC__ "MatGetLocalSize_MPIDense"
713 int MatGetLocalSize_MPIDense(Mat A,int *m,int *n)
714 {
715   Mat_MPIDense *mat = (Mat_MPIDense *) A->data;
716 
717   PetscFunctionBegin;
718   *m = mat->m; *n = mat->N;
719   PetscFunctionReturn(0);
720 }
721 
722 #undef __FUNC__
723 #define __FUNC__ "MatGetOwnershipRange_MPIDense"
724 int MatGetOwnershipRange_MPIDense(Mat A,int *m,int *n)
725 {
726   Mat_MPIDense *mat = (Mat_MPIDense *) A->data;
727 
728   PetscFunctionBegin;
729   *m = mat->rstart; *n = mat->rend;
730   PetscFunctionReturn(0);
731 }
732 
733 #undef __FUNC__
734 #define __FUNC__ "MatGetRow_MPIDense"
735 int MatGetRow_MPIDense(Mat A,int row,int *nz,int **idx,Scalar **v)
736 {
737   Mat_MPIDense *mat = (Mat_MPIDense *) A->data;
738   int          lrow, rstart = mat->rstart, rend = mat->rend,ierr;
739 
740   PetscFunctionBegin;
741   if (row < rstart || row >= rend) SETERRQ(PETSC_ERR_SUP,0,"only local rows")
742   lrow = row - rstart;
743   ierr = MatGetRow(mat->A,lrow,nz,idx,v);CHKERRQ(ierr);
744   PetscFunctionReturn(0);
745 }
746 
747 #undef __FUNC__
748 #define __FUNC__ "MatRestoreRow_MPIDense"
749 int MatRestoreRow_MPIDense(Mat mat,int row,int *nz,int **idx,Scalar **v)
750 {
751   PetscFunctionBegin;
752   if (idx) PetscFree(*idx);
753   if (v) PetscFree(*v);
754   PetscFunctionReturn(0);
755 }
756 
757 #undef __FUNC__
758 #define __FUNC__ "MatNorm_MPIDense"
759 int MatNorm_MPIDense(Mat A,NormType type,double *norm)
760 {
761   Mat_MPIDense *mdn = (Mat_MPIDense *) A->data;
762   Mat_SeqDense *mat = (Mat_SeqDense*) mdn->A->data;
763   int          ierr, i, j;
764   double       sum = 0.0;
765   Scalar       *v = mat->v;
766 
767   PetscFunctionBegin;
768   if (mdn->size == 1) {
769     ierr =  MatNorm(mdn->A,type,norm); CHKERRQ(ierr);
770   } else {
771     if (type == NORM_FROBENIUS) {
772       for (i=0; i<mat->n*mat->m; i++ ) {
773 #if defined(USE_PETSC_COMPLEX)
774         sum += real(conj(*v)*(*v)); v++;
775 #else
776         sum += (*v)*(*v); v++;
777 #endif
778       }
779       ierr = MPI_Allreduce(&sum,norm,1,MPI_DOUBLE,MPI_SUM,A->comm);CHKERRQ(ierr);
780       *norm = sqrt(*norm);
781       PLogFlops(2*mat->n*mat->m);
782     } else if (type == NORM_1) {
783       double *tmp, *tmp2;
784       tmp  = (double *) PetscMalloc( 2*mdn->N*sizeof(double) ); CHKPTRQ(tmp);
785       tmp2 = tmp + mdn->N;
786       PetscMemzero(tmp,2*mdn->N*sizeof(double));
787       *norm = 0.0;
788       v = mat->v;
789       for ( j=0; j<mat->n; j++ ) {
790         for ( i=0; i<mat->m; i++ ) {
791           tmp[j] += PetscAbsScalar(*v);  v++;
792         }
793       }
794       ierr = MPI_Allreduce(tmp,tmp2,mdn->N,MPI_DOUBLE,MPI_SUM,A->comm);CHKERRQ(ierr);
795       for ( j=0; j<mdn->N; j++ ) {
796         if (tmp2[j] > *norm) *norm = tmp2[j];
797       }
798       PetscFree(tmp);
799       PLogFlops(mat->n*mat->m);
800     } else if (type == NORM_INFINITY) { /* max row norm */
801       double ntemp;
802       ierr = MatNorm(mdn->A,type,&ntemp); CHKERRQ(ierr);
803       ierr = MPI_Allreduce(&ntemp,norm,1,MPI_DOUBLE,MPI_MAX,A->comm);CHKERRQ(ierr);
804     } else {
805       SETERRQ(PETSC_ERR_SUP,0,"No support for two norm");
806     }
807   }
808   PetscFunctionReturn(0);
809 }
810 
811 #undef __FUNC__
812 #define __FUNC__ "MatTranspose_MPIDense"
813 int MatTranspose_MPIDense(Mat A,Mat *matout)
814 {
815   Mat_MPIDense *a = (Mat_MPIDense *) A->data;
816   Mat_SeqDense *Aloc = (Mat_SeqDense *) a->A->data;
817   Mat          B;
818   int          M = a->M, N = a->N, m, n, *rwork, rstart = a->rstart;
819   int          j, i, ierr;
820   Scalar       *v;
821 
822   PetscFunctionBegin;
823   if (matout == PETSC_NULL && M != N) {
824     SETERRQ(PETSC_ERR_SUP,0,"Supports square matrix only in-place");
825   }
826   ierr = MatCreateMPIDense(A->comm,PETSC_DECIDE,PETSC_DECIDE,N,M,PETSC_NULL,&B);CHKERRQ(ierr);
827 
828   m = Aloc->m; n = Aloc->n; v = Aloc->v;
829   rwork = (int *) PetscMalloc(n*sizeof(int)); CHKPTRQ(rwork);
830   for ( j=0; j<n; j++ ) {
831     for (i=0; i<m; i++) rwork[i] = rstart + i;
832     ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES); CHKERRQ(ierr);
833     v   += m;
834   }
835   PetscFree(rwork);
836   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
837   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
838   if (matout != PETSC_NULL) {
839     *matout = B;
840   } else {
841     /* This isn't really an in-place transpose, but free data struct from a */
842     PetscFree(a->rowners);
843     ierr = MatDestroy(a->A); CHKERRQ(ierr);
844     if (a->lvec) VecDestroy(a->lvec);
845     if (a->Mvctx) VecScatterDestroy(a->Mvctx);
846     PetscFree(a);
847     PetscMemcpy(A,B,sizeof(struct _p_Mat));
848     PetscHeaderDestroy(B);
849   }
850   PetscFunctionReturn(0);
851 }
852 
853 #include "pinclude/plapack.h"
854 #undef __FUNC__
855 #define __FUNC__ "MatScale_MPIDense"
856 int MatScale_MPIDense(Scalar *alpha,Mat inA)
857 {
858   Mat_MPIDense *A = (Mat_MPIDense *) inA->data;
859   Mat_SeqDense *a = (Mat_SeqDense *) A->A->data;
860   int          one = 1, nz;
861 
862   PetscFunctionBegin;
863   nz = a->m*a->n;
864   BLscal_( &nz, alpha, a->v, &one );
865   PLogFlops(nz);
866   PetscFunctionReturn(0);
867 }
868 
869 static int MatConvertSameType_MPIDense(Mat,Mat *,int);
870 
871 /* -------------------------------------------------------------------*/
872 static struct _MatOps MatOps = {MatSetValues_MPIDense,
873        MatGetRow_MPIDense,MatRestoreRow_MPIDense,
874        MatMult_MPIDense,MatMultAdd_MPIDense,
875        MatMultTrans_MPIDense,MatMultTransAdd_MPIDense,
876 /*       MatSolve_MPIDense,0, */
877        0,0,
878        0,0,
879        0,0,
880 /*       MatLUFactor_MPIDense,0, */
881        0,MatTranspose_MPIDense,
882        MatGetInfo_MPIDense,0,
883        MatGetDiagonal_MPIDense,0,MatNorm_MPIDense,
884        MatAssemblyBegin_MPIDense,MatAssemblyEnd_MPIDense,
885        0,
886        MatSetOption_MPIDense,MatZeroEntries_MPIDense,MatZeroRows_MPIDense,
887        0,0,
888 /*       0,MatLUFactorSymbolic_MPIDense,MatLUFactorNumeric_MPIDense, */
889        0,0,
890        MatGetSize_MPIDense,MatGetLocalSize_MPIDense,
891        MatGetOwnershipRange_MPIDense,
892        0,0, MatGetArray_MPIDense, MatRestoreArray_MPIDense,
893        MatConvertSameType_MPIDense,
894        0,0,0,0,0,
895        0,0,MatGetValues_MPIDense,0,0,MatScale_MPIDense,
896        0,0,0,MatGetBlockSize_MPIDense};
897 
898 #undef __FUNC__
899 #define __FUNC__ "MatCreateMPIDense"
900 /*@C
901    MatCreateMPIDense - Creates a sparse parallel matrix in dense format.
902 
903    Input Parameters:
904 .  comm - MPI communicator
905 .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
906 .  n - number of local columns (or PETSC_DECIDE to have calculated
907            if N is given)
908 .  M - number of global rows (or PETSC_DECIDE to have calculated if m is given)
909 .  N - number of global columns (or PETSC_DECIDE to have calculated
910            if n is given)
911 .  data - optional location of matrix data.  Set data=PETSC_NULL for PETSc
912    to control all matrix memory allocation.
913 
914    Output Parameter:
915 .  A - the matrix
916 
917    Notes:
918    The dense format is fully compatible with standard Fortran 77
919    storage by columns.
920 
921    The data input variable is intended primarily for Fortran programmers
922    who wish to allocate their own matrix memory space.  Most users should
923    set data=PETSC_NULL.
924 
925    The user MUST specify either the local or global matrix dimensions
926    (possibly both).
927 
928    Currently, the only parallel dense matrix decomposition is by rows,
929    so that n=N and each submatrix owns all of the global columns.
930 
931 .keywords: matrix, dense, parallel
932 
933 .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues()
934 @*/
935 int MatCreateMPIDense(MPI_Comm comm,int m,int n,int M,int N,Scalar *data,Mat *A)
936 {
937   Mat          mat;
938   Mat_MPIDense *a;
939   int          ierr, i,flg;
940 
941   PetscFunctionBegin;
942   /* Note:  For now, when data is specified above, this assumes the user correctly
943    allocates the local dense storage space.  We should add error checking. */
944 
945   *A = 0;
946   PetscHeaderCreate(mat,_p_Mat,MAT_COOKIE,MATMPIDENSE,comm,MatDestroy,MatView);
947   PLogObjectCreate(mat);
948   mat->data       = (void *) (a = PetscNew(Mat_MPIDense)); CHKPTRQ(a);
949   PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps));
950   mat->destroy    = MatDestroy_MPIDense;
951   mat->view       = MatView_MPIDense;
952   mat->factor     = 0;
953   mat->mapping    = 0;
954 
955   a->factor       = 0;
956   mat->insertmode = NOT_SET_VALUES;
957   MPI_Comm_rank(comm,&a->rank);
958   MPI_Comm_size(comm,&a->size);
959 
960   if (M == PETSC_DECIDE) {ierr = MPI_Allreduce(&m,&M,1,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr);}
961   if (m == PETSC_DECIDE) {m = M/a->size + ((M % a->size) > a->rank);}
962 
963   /* each row stores all columns */
964   if (N == PETSC_DECIDE) N = n;
965   if (n == PETSC_DECIDE) {n = N/a->size + ((N % a->size) > a->rank);}
966   /*  if (n != N) SETERRQ(PETSC_ERR_SUP,0,"For now, only n=N is supported"); */
967   a->N = mat->N = N;
968   a->M = mat->M = M;
969   a->m = mat->m = m;
970   a->n = mat->n = n;
971 
972   /* build local table of row and column ownerships */
973   a->rowners = (int *) PetscMalloc(2*(a->size+2)*sizeof(int)); CHKPTRQ(a->rowners);
974   a->cowners = a->rowners + a->size + 1;
975   PLogObjectMemory(mat,2*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIDense));
976   ierr = MPI_Allgather(&m,1,MPI_INT,a->rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
977   a->rowners[0] = 0;
978   for ( i=2; i<=a->size; i++ ) {
979     a->rowners[i] += a->rowners[i-1];
980   }
981   a->rstart = a->rowners[a->rank];
982   a->rend   = a->rowners[a->rank+1];
983   ierr      = MPI_Allgather(&n,1,MPI_INT,a->cowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
984   a->cowners[0] = 0;
985   for ( i=2; i<=a->size; i++ ) {
986     a->cowners[i] += a->cowners[i-1];
987   }
988 
989   ierr = MatCreateSeqDense(PETSC_COMM_SELF,m,N,data,&a->A); CHKERRQ(ierr);
990   PLogObjectParent(mat,a->A);
991 
992   /* build cache for off array entries formed */
993   ierr = StashBuild_Private(&a->stash); CHKERRQ(ierr);
994 
995   /* stuff used for matrix vector multiply */
996   a->lvec        = 0;
997   a->Mvctx       = 0;
998   a->roworiented = 1;
999 
1000   *A = mat;
1001   ierr = OptionsHasName(PETSC_NULL,"-help",&flg); CHKERRQ(ierr);
1002   if (flg) {
1003     ierr = MatPrintHelp(mat); CHKERRQ(ierr);
1004   }
1005   PetscFunctionReturn(0);
1006 }
1007 
1008 #undef __FUNC__
1009 #define __FUNC__ "MatConvertSameType_MPIDense"
1010 static int MatConvertSameType_MPIDense(Mat A,Mat *newmat,int cpvalues)
1011 {
1012   Mat          mat;
1013   Mat_MPIDense *a,*oldmat = (Mat_MPIDense *) A->data;
1014   int          ierr;
1015   FactorCtx    *factor;
1016 
1017   PetscFunctionBegin;
1018   *newmat       = 0;
1019   PetscHeaderCreate(mat,_p_Mat,MAT_COOKIE,MATMPIDENSE,A->comm,MatDestroy,MatView);
1020   PLogObjectCreate(mat);
1021   mat->data      = (void *) (a = PetscNew(Mat_MPIDense)); CHKPTRQ(a);
1022   PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps));
1023   mat->destroy   = MatDestroy_MPIDense;
1024   mat->view      = MatView_MPIDense;
1025   mat->factor    = A->factor;
1026   mat->assembled = PETSC_TRUE;
1027 
1028   a->m = mat->m = oldmat->m;
1029   a->n = mat->n = oldmat->n;
1030   a->M = mat->M = oldmat->M;
1031   a->N = mat->N = oldmat->N;
1032   if (oldmat->factor) {
1033     a->factor = (FactorCtx *) (factor = PetscNew(FactorCtx)); CHKPTRQ(factor);
1034     /* copy factor contents ... add this code! */
1035   } else a->factor = 0;
1036 
1037   a->rstart       = oldmat->rstart;
1038   a->rend         = oldmat->rend;
1039   a->size         = oldmat->size;
1040   a->rank         = oldmat->rank;
1041   mat->insertmode = NOT_SET_VALUES;
1042 
1043   a->rowners = (int *) PetscMalloc((a->size+1)*sizeof(int)); CHKPTRQ(a->rowners);
1044   PLogObjectMemory(mat,(a->size+1)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIDense));
1045   PetscMemcpy(a->rowners,oldmat->rowners,(a->size+1)*sizeof(int));
1046   ierr = StashInitialize_Private(&a->stash); CHKERRQ(ierr);
1047 
1048   ierr =  VecDuplicate(oldmat->lvec,&a->lvec); CHKERRQ(ierr);
1049   PLogObjectParent(mat,a->lvec);
1050   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx); CHKERRQ(ierr);
1051   PLogObjectParent(mat,a->Mvctx);
1052   ierr =  MatConvert(oldmat->A,MATSAME,&a->A); CHKERRQ(ierr);
1053   PLogObjectParent(mat,a->A);
1054   *newmat = mat;
1055   PetscFunctionReturn(0);
1056 }
1057 
1058 #include "sys.h"
1059 
1060 #undef __FUNC__
1061 #define __FUNC__ "MatLoad_MPIDense_DenseInFile"
1062 int MatLoad_MPIDense_DenseInFile(MPI_Comm comm,int fd,int M, int N, Mat *newmat)
1063 {
1064   int        *rowners, i,size,rank,m,rstart,rend,ierr,nz,j;
1065   Scalar     *array,*vals,*vals_ptr;
1066   MPI_Status status;
1067 
1068   PetscFunctionBegin;
1069   MPI_Comm_rank(comm,&rank);
1070   MPI_Comm_size(comm,&size);
1071 
1072   /* determine ownership of all rows */
1073   m          = M/size + ((M % size) > rank);
1074   rowners    = (int *) PetscMalloc((size+2)*sizeof(int)); CHKPTRQ(rowners);
1075   ierr       = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
1076   rowners[0] = 0;
1077   for ( i=2; i<=size; i++ ) {
1078     rowners[i] += rowners[i-1];
1079   }
1080   rstart = rowners[rank];
1081   rend   = rowners[rank+1];
1082 
1083   ierr = MatCreateMPIDense(comm,m,PETSC_DECIDE,M,N,PETSC_NULL,newmat);CHKERRQ(ierr);
1084   ierr = MatGetArray(*newmat,&array); CHKERRQ(ierr);
1085 
1086   if (!rank) {
1087     vals = (Scalar *) PetscMalloc( m*N*sizeof(Scalar) ); CHKPTRQ(vals);
1088 
1089     /* read in my part of the matrix numerical values  */
1090     ierr = PetscBinaryRead(fd,vals,m*N,PETSC_SCALAR); CHKERRQ(ierr);
1091 
1092     /* insert into matrix-by row (this is why cannot directly read into array */
1093     vals_ptr = vals;
1094     for ( i=0; i<m; i++ ) {
1095       for ( j=0; j<N; j++ ) {
1096         array[i + j*m] = *vals_ptr++;
1097       }
1098     }
1099 
1100     /* read in other processors and ship out */
1101     for ( i=1; i<size; i++ ) {
1102       nz   = (rowners[i+1] - rowners[i])*N;
1103       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR); CHKERRQ(ierr);
1104       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,(*newmat)->tag,comm);CHKERRQ(ierr);
1105     }
1106   } else {
1107     /* receive numeric values */
1108     vals = (Scalar*) PetscMalloc( m*N*sizeof(Scalar) ); CHKPTRQ(vals);
1109 
1110     /* receive message of values*/
1111     ierr = MPI_Recv(vals,m*N,MPIU_SCALAR,0,(*newmat)->tag,comm,&status);CHKERRQ(ierr);
1112 
1113     /* insert into matrix-by row (this is why cannot directly read into array */
1114     vals_ptr = vals;
1115     for ( i=0; i<m; i++ ) {
1116       for ( j=0; j<N; j++ ) {
1117         array[i + j*m] = *vals_ptr++;
1118       }
1119     }
1120   }
1121   PetscFree(rowners);
1122   PetscFree(vals);
1123   ierr = MatAssemblyBegin(*newmat,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
1124   ierr = MatAssemblyEnd(*newmat,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
1125   PetscFunctionReturn(0);
1126 }
1127 
1128 
1129 #undef __FUNC__
1130 #define __FUNC__ "MatLoad_MPIDense"
1131 int MatLoad_MPIDense(Viewer viewer,MatType type,Mat *newmat)
1132 {
1133   Mat          A;
1134   Scalar       *vals,*svals;
1135   MPI_Comm     comm = ((PetscObject)viewer)->comm;
1136   MPI_Status   status;
1137   int          header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,maxnz,*cols;
1138   int          *ourlens,*sndcounts = 0,*procsnz = 0, *offlens,jj,*mycols,*smycols;
1139   int          tag = ((PetscObject)viewer)->tag;
1140   int          i, nz, ierr, j,rstart, rend, fd;
1141 
1142   PetscFunctionBegin;
1143   MPI_Comm_size(comm,&size); MPI_Comm_rank(comm,&rank);
1144   if (!rank) {
1145     ierr = ViewerBinaryGetDescriptor(viewer,&fd); CHKERRQ(ierr);
1146     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT); CHKERRQ(ierr);
1147     if (header[0] != MAT_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"not matrix object");
1148   }
1149 
1150   ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr);
1151   M = header[1]; N = header[2]; nz = header[3];
1152 
1153   /*
1154        Handle case where matrix is stored on disk as a dense matrix
1155   */
1156   if (nz == MATRIX_BINARY_FORMAT_DENSE) {
1157     ierr = MatLoad_MPIDense_DenseInFile(comm,fd,M,N,newmat);CHKERRQ(ierr);
1158     PetscFunctionReturn(0);
1159   }
1160 
1161   /* determine ownership of all rows */
1162   m          = M/size + ((M % size) > rank);
1163   rowners    = (int *) PetscMalloc((size+2)*sizeof(int)); CHKPTRQ(rowners);
1164   ierr       = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
1165   rowners[0] = 0;
1166   for ( i=2; i<=size; i++ ) {
1167     rowners[i] += rowners[i-1];
1168   }
1169   rstart = rowners[rank];
1170   rend   = rowners[rank+1];
1171 
1172   /* distribute row lengths to all processors */
1173   ourlens = (int*) PetscMalloc( 2*(rend-rstart)*sizeof(int) ); CHKPTRQ(ourlens);
1174   offlens = ourlens + (rend-rstart);
1175   if (!rank) {
1176     rowlengths = (int*) PetscMalloc( M*sizeof(int) ); CHKPTRQ(rowlengths);
1177     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT); CHKERRQ(ierr);
1178     sndcounts = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(sndcounts);
1179     for ( i=0; i<size; i++ ) sndcounts[i] = rowners[i+1] - rowners[i];
1180     ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPI_INT,ourlens,rend-rstart,MPI_INT,0,comm);CHKERRQ(ierr);
1181     PetscFree(sndcounts);
1182   } else {
1183     ierr = MPI_Scatterv(0,0,0,MPI_INT,ourlens,rend-rstart,MPI_INT, 0,comm);CHKERRQ(ierr);
1184   }
1185 
1186   if (!rank) {
1187     /* calculate the number of nonzeros on each processor */
1188     procsnz = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(procsnz);
1189     PetscMemzero(procsnz,size*sizeof(int));
1190     for ( i=0; i<size; i++ ) {
1191       for ( j=rowners[i]; j< rowners[i+1]; j++ ) {
1192         procsnz[i] += rowlengths[j];
1193       }
1194     }
1195     PetscFree(rowlengths);
1196 
1197     /* determine max buffer needed and allocate it */
1198     maxnz = 0;
1199     for ( i=0; i<size; i++ ) {
1200       maxnz = PetscMax(maxnz,procsnz[i]);
1201     }
1202     cols = (int *) PetscMalloc( maxnz*sizeof(int) ); CHKPTRQ(cols);
1203 
1204     /* read in my part of the matrix column indices  */
1205     nz = procsnz[0];
1206     mycols = (int *) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(mycols);
1207     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT); CHKERRQ(ierr);
1208 
1209     /* read in every one elses and ship off */
1210     for ( i=1; i<size; i++ ) {
1211       nz   = procsnz[i];
1212       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT); CHKERRQ(ierr);
1213       ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr);
1214     }
1215     PetscFree(cols);
1216   } else {
1217     /* determine buffer space needed for message */
1218     nz = 0;
1219     for ( i=0; i<m; i++ ) {
1220       nz += ourlens[i];
1221     }
1222     mycols = (int*) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(mycols);
1223 
1224     /* receive message of column indices*/
1225     ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr);
1226     ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr);
1227     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file");
1228   }
1229 
1230   /* loop over local rows, determining number of off diagonal entries */
1231   PetscMemzero(offlens,m*sizeof(int));
1232   jj = 0;
1233   for ( i=0; i<m; i++ ) {
1234     for ( j=0; j<ourlens[i]; j++ ) {
1235       if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++;
1236       jj++;
1237     }
1238   }
1239 
1240   /* create our matrix */
1241   for ( i=0; i<m; i++ ) {
1242     ourlens[i] -= offlens[i];
1243   }
1244   ierr = MatCreateMPIDense(comm,m,PETSC_DECIDE,M,N,PETSC_NULL,newmat);CHKERRQ(ierr);
1245   A = *newmat;
1246   for ( i=0; i<m; i++ ) {
1247     ourlens[i] += offlens[i];
1248   }
1249 
1250   if (!rank) {
1251     vals = (Scalar *) PetscMalloc( maxnz*sizeof(Scalar) ); CHKPTRQ(vals);
1252 
1253     /* read in my part of the matrix numerical values  */
1254     nz = procsnz[0];
1255     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR); CHKERRQ(ierr);
1256 
1257     /* insert into matrix */
1258     jj      = rstart;
1259     smycols = mycols;
1260     svals   = vals;
1261     for ( i=0; i<m; i++ ) {
1262       ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
1263       smycols += ourlens[i];
1264       svals   += ourlens[i];
1265       jj++;
1266     }
1267 
1268     /* read in other processors and ship out */
1269     for ( i=1; i<size; i++ ) {
1270       nz   = procsnz[i];
1271       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR); CHKERRQ(ierr);
1272       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
1273     }
1274     PetscFree(procsnz);
1275   } else {
1276     /* receive numeric values */
1277     vals = (Scalar*) PetscMalloc( nz*sizeof(Scalar) ); CHKPTRQ(vals);
1278 
1279     /* receive message of values*/
1280     ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
1281     ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
1282     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file");
1283 
1284     /* insert into matrix */
1285     jj      = rstart;
1286     smycols = mycols;
1287     svals   = vals;
1288     for ( i=0; i<m; i++ ) {
1289       ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
1290       smycols += ourlens[i];
1291       svals   += ourlens[i];
1292       jj++;
1293     }
1294   }
1295   PetscFree(ourlens); PetscFree(vals); PetscFree(mycols); PetscFree(rowners);
1296 
1297   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
1298   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
1299   PetscFunctionReturn(0);
1300 }
1301 
1302 
1303 
1304 
1305 
1306