1 #define PETSCMAT_DLL 2 3 /* 4 Basic functions for basic parallel dense matrices. 5 */ 6 7 8 #include "src/mat/impls/dense/mpi/mpidense.h" /*I "petscmat.h" I*/ 9 #if defined(PETSC_HAVE_PLAPACK) 10 static PetscMPIInt Plapack_nprows,Plapack_npcols,Plapack_ierror,Plapack_nb_alg; 11 static MPI_Comm Plapack_comm_2d; 12 #endif 13 14 #undef __FUNCT__ 15 #define __FUNCT__ "MatDenseGetLocalMatrix" 16 /*@ 17 18 MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 19 matrix that represents the operator. For sequential matrices it returns itself. 20 21 Input Parameter: 22 . A - the Seq or MPI dense matrix 23 24 Output Parameter: 25 . B - the inner matrix 26 27 Level: intermediate 28 29 @*/ 30 PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 31 { 32 Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 33 PetscErrorCode ierr; 34 PetscTruth flg; 35 36 PetscFunctionBegin; 37 ierr = PetscTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr); 38 if (flg) { 39 *B = mat->A; 40 } else { 41 *B = A; 42 } 43 PetscFunctionReturn(0); 44 } 45 46 #undef __FUNCT__ 47 #define __FUNCT__ "MatGetRow_MPIDense" 48 PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 49 { 50 Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 51 PetscErrorCode ierr; 52 PetscInt lrow,rstart = A->rmap.rstart,rend = A->rmap.rend; 53 54 PetscFunctionBegin; 55 if (row < rstart || row >= rend) SETERRQ(PETSC_ERR_SUP,"only local rows") 56 lrow = row - rstart; 57 ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt **)idx,(const PetscScalar **)v);CHKERRQ(ierr); 58 PetscFunctionReturn(0); 59 } 60 61 #undef __FUNCT__ 62 #define __FUNCT__ "MatRestoreRow_MPIDense" 63 PetscErrorCode MatRestoreRow_MPIDense(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 64 { 65 PetscErrorCode ierr; 66 67 PetscFunctionBegin; 68 if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);} 69 if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);} 70 PetscFunctionReturn(0); 71 } 72 73 EXTERN_C_BEGIN 74 #undef __FUNCT__ 75 #define __FUNCT__ "MatGetDiagonalBlock_MPIDense" 76 PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIDense(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *B) 77 { 78 Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 79 PetscErrorCode ierr; 80 PetscInt m = A->rmap.n,rstart = A->rmap.rstart; 81 PetscScalar *array; 82 MPI_Comm comm; 83 84 PetscFunctionBegin; 85 if (A->rmap.N != A->cmap.N) SETERRQ(PETSC_ERR_SUP,"Only square matrices supported."); 86 87 /* The reuse aspect is not implemented efficiently */ 88 if (reuse) { ierr = MatDestroy(*B);CHKERRQ(ierr);} 89 90 ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr); 91 ierr = MatGetArray(mdn->A,&array);CHKERRQ(ierr); 92 ierr = MatCreate(comm,B);CHKERRQ(ierr); 93 ierr = MatSetSizes(*B,m,m,m,m);CHKERRQ(ierr); 94 ierr = MatSetType(*B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr); 95 ierr = MatSeqDenseSetPreallocation(*B,array+m*rstart);CHKERRQ(ierr); 96 ierr = MatRestoreArray(mdn->A,&array);CHKERRQ(ierr); 97 ierr = MatAssemblyBegin(*B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 98 ierr = MatAssemblyEnd(*B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 99 100 *iscopy = PETSC_TRUE; 101 PetscFunctionReturn(0); 102 } 103 EXTERN_C_END 104 105 #undef __FUNCT__ 106 #define __FUNCT__ "MatSetValues_MPIDense" 107 PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 108 { 109 Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 110 PetscErrorCode ierr; 111 PetscInt i,j,rstart = mat->rmap.rstart,rend = mat->rmap.rend,row; 112 PetscTruth roworiented = A->roworiented; 113 114 PetscFunctionBegin; 115 for (i=0; i<m; i++) { 116 if (idxm[i] < 0) continue; 117 if (idxm[i] >= mat->rmap.N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 118 if (idxm[i] >= rstart && idxm[i] < rend) { 119 row = idxm[i] - rstart; 120 if (roworiented) { 121 ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr); 122 } else { 123 for (j=0; j<n; j++) { 124 if (idxn[j] < 0) continue; 125 if (idxn[j] >= mat->cmap.N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 126 ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr); 127 } 128 } 129 } else { 130 if (!A->donotstash) { 131 if (roworiented) { 132 ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n);CHKERRQ(ierr); 133 } else { 134 ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m);CHKERRQ(ierr); 135 } 136 } 137 } 138 } 139 PetscFunctionReturn(0); 140 } 141 142 #undef __FUNCT__ 143 #define __FUNCT__ "MatGetValues_MPIDense" 144 PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 145 { 146 Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 147 PetscErrorCode ierr; 148 PetscInt i,j,rstart = mat->rmap.rstart,rend = mat->rmap.rend,row; 149 150 PetscFunctionBegin; 151 for (i=0; i<m; i++) { 152 if (idxm[i] < 0) continue; /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */ 153 if (idxm[i] >= mat->rmap.N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 154 if (idxm[i] >= rstart && idxm[i] < rend) { 155 row = idxm[i] - rstart; 156 for (j=0; j<n; j++) { 157 if (idxn[j] < 0) continue; /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */ 158 if (idxn[j] >= mat->cmap.N) { 159 SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 160 } 161 ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr); 162 } 163 } else { 164 SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 165 } 166 } 167 PetscFunctionReturn(0); 168 } 169 170 #undef __FUNCT__ 171 #define __FUNCT__ "MatGetArray_MPIDense" 172 PetscErrorCode MatGetArray_MPIDense(Mat A,PetscScalar *array[]) 173 { 174 Mat_MPIDense *a = (Mat_MPIDense*)A->data; 175 PetscErrorCode ierr; 176 177 PetscFunctionBegin; 178 ierr = MatGetArray(a->A,array);CHKERRQ(ierr); 179 PetscFunctionReturn(0); 180 } 181 182 #undef __FUNCT__ 183 #define __FUNCT__ "MatGetSubMatrix_MPIDense" 184 static PetscErrorCode MatGetSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,PetscInt cs,MatReuse scall,Mat *B) 185 { 186 Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 187 Mat_SeqDense *lmat = (Mat_SeqDense*)mat->A->data; 188 PetscErrorCode ierr; 189 PetscInt i,j,*irow,*icol,rstart,rend,nrows,ncols,nlrows,nlcols; 190 PetscScalar *av,*bv,*v = lmat->v; 191 Mat newmat; 192 193 PetscFunctionBegin; 194 ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 195 ierr = ISGetIndices(iscol,&icol);CHKERRQ(ierr); 196 ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 197 ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 198 199 /* No parallel redistribution currently supported! Should really check each index set 200 to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 201 original matrix! */ 202 203 ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr); 204 ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 205 206 /* Check submatrix call */ 207 if (scall == MAT_REUSE_MATRIX) { 208 /* SETERRQ(PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 209 /* Really need to test rows and column sizes! */ 210 newmat = *B; 211 } else { 212 /* Create and fill new matrix */ 213 ierr = MatCreate(((PetscObject)A)->comm,&newmat);CHKERRQ(ierr); 214 ierr = MatSetSizes(newmat,nrows,cs,PETSC_DECIDE,ncols);CHKERRQ(ierr); 215 ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 216 ierr = MatMPIDenseSetPreallocation(newmat,PETSC_NULL);CHKERRQ(ierr); 217 } 218 219 /* Now extract the data pointers and do the copy, column at a time */ 220 newmatd = (Mat_MPIDense*)newmat->data; 221 bv = ((Mat_SeqDense *)newmatd->A->data)->v; 222 223 for (i=0; i<ncols; i++) { 224 av = v + nlrows*icol[i]; 225 for (j=0; j<nrows; j++) { 226 *bv++ = av[irow[j] - rstart]; 227 } 228 } 229 230 /* Assemble the matrices so that the correct flags are set */ 231 ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 232 ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 233 234 /* Free work space */ 235 ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 236 ierr = ISRestoreIndices(iscol,&icol);CHKERRQ(ierr); 237 *B = newmat; 238 PetscFunctionReturn(0); 239 } 240 241 #undef __FUNCT__ 242 #define __FUNCT__ "MatRestoreArray_MPIDense" 243 PetscErrorCode MatRestoreArray_MPIDense(Mat A,PetscScalar *array[]) 244 { 245 PetscFunctionBegin; 246 PetscFunctionReturn(0); 247 } 248 249 #undef __FUNCT__ 250 #define __FUNCT__ "MatAssemblyBegin_MPIDense" 251 PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 252 { 253 Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 254 MPI_Comm comm = ((PetscObject)mat)->comm; 255 PetscErrorCode ierr; 256 PetscInt nstash,reallocs; 257 InsertMode addv; 258 259 PetscFunctionBegin; 260 /* make sure all processors are either in INSERTMODE or ADDMODE */ 261 ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,comm);CHKERRQ(ierr); 262 if (addv == (ADD_VALUES|INSERT_VALUES)) { 263 SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Cannot mix adds/inserts on different procs"); 264 } 265 mat->insertmode = addv; /* in case this processor had no cache */ 266 267 ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap.range);CHKERRQ(ierr); 268 ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 269 ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 270 PetscFunctionReturn(0); 271 } 272 273 #undef __FUNCT__ 274 #define __FUNCT__ "MatAssemblyEnd_MPIDense" 275 PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 276 { 277 Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 278 PetscErrorCode ierr; 279 PetscInt i,*row,*col,flg,j,rstart,ncols; 280 PetscMPIInt n; 281 PetscScalar *val; 282 InsertMode addv=mat->insertmode; 283 284 PetscFunctionBegin; 285 /* wait on receives */ 286 while (1) { 287 ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 288 if (!flg) break; 289 290 for (i=0; i<n;) { 291 /* Now identify the consecutive vals belonging to the same row */ 292 for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 293 if (j < n) ncols = j-i; 294 else ncols = n-i; 295 /* Now assemble all these values with a single function call */ 296 ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 297 i = j; 298 } 299 } 300 ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 301 302 ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr); 303 ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr); 304 305 if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 306 ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 307 } 308 PetscFunctionReturn(0); 309 } 310 311 #undef __FUNCT__ 312 #define __FUNCT__ "MatZeroEntries_MPIDense" 313 PetscErrorCode MatZeroEntries_MPIDense(Mat A) 314 { 315 PetscErrorCode ierr; 316 Mat_MPIDense *l = (Mat_MPIDense*)A->data; 317 318 PetscFunctionBegin; 319 ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 320 PetscFunctionReturn(0); 321 } 322 323 /* the code does not do the diagonal entries correctly unless the 324 matrix is square and the column and row owerships are identical. 325 This is a BUG. The only way to fix it seems to be to access 326 mdn->A and mdn->B directly and not through the MatZeroRows() 327 routine. 328 */ 329 #undef __FUNCT__ 330 #define __FUNCT__ "MatZeroRows_MPIDense" 331 PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag) 332 { 333 Mat_MPIDense *l = (Mat_MPIDense*)A->data; 334 PetscErrorCode ierr; 335 PetscInt i,*owners = A->rmap.range; 336 PetscInt *nprocs,j,idx,nsends; 337 PetscInt nmax,*svalues,*starts,*owner,nrecvs; 338 PetscInt *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source; 339 PetscInt *lens,*lrows,*values; 340 PetscMPIInt n,imdex,rank = l->rank,size = l->size; 341 MPI_Comm comm = ((PetscObject)A)->comm; 342 MPI_Request *send_waits,*recv_waits; 343 MPI_Status recv_status,*send_status; 344 PetscTruth found; 345 346 PetscFunctionBegin; 347 /* first count number of contributors to each processor */ 348 ierr = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 349 ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 350 ierr = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/ 351 for (i=0; i<N; i++) { 352 idx = rows[i]; 353 found = PETSC_FALSE; 354 for (j=0; j<size; j++) { 355 if (idx >= owners[j] && idx < owners[j+1]) { 356 nprocs[2*j]++; nprocs[2*j+1] = 1; owner[i] = j; found = PETSC_TRUE; break; 357 } 358 } 359 if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 360 } 361 nsends = 0; for (i=0; i<size; i++) { nsends += nprocs[2*i+1];} 362 363 /* inform other processors of number of messages and max length*/ 364 ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 365 366 /* post receives: */ 367 ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr); 368 ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 369 for (i=0; i<nrecvs; i++) { 370 ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 371 } 372 373 /* do sends: 374 1) starts[i] gives the starting index in svalues for stuff going to 375 the ith processor 376 */ 377 ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr); 378 ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 379 ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 380 starts[0] = 0; 381 for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 382 for (i=0; i<N; i++) { 383 svalues[starts[owner[i]]++] = rows[i]; 384 } 385 386 starts[0] = 0; 387 for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 388 count = 0; 389 for (i=0; i<size; i++) { 390 if (nprocs[2*i+1]) { 391 ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 392 } 393 } 394 ierr = PetscFree(starts);CHKERRQ(ierr); 395 396 base = owners[rank]; 397 398 /* wait on receives */ 399 ierr = PetscMalloc(2*(nrecvs+1)*sizeof(PetscInt),&lens);CHKERRQ(ierr); 400 source = lens + nrecvs; 401 count = nrecvs; slen = 0; 402 while (count) { 403 ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 404 /* unpack receives into our local space */ 405 ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 406 source[imdex] = recv_status.MPI_SOURCE; 407 lens[imdex] = n; 408 slen += n; 409 count--; 410 } 411 ierr = PetscFree(recv_waits);CHKERRQ(ierr); 412 413 /* move the data into the send scatter */ 414 ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr); 415 count = 0; 416 for (i=0; i<nrecvs; i++) { 417 values = rvalues + i*nmax; 418 for (j=0; j<lens[i]; j++) { 419 lrows[count++] = values[j] - base; 420 } 421 } 422 ierr = PetscFree(rvalues);CHKERRQ(ierr); 423 ierr = PetscFree(lens);CHKERRQ(ierr); 424 ierr = PetscFree(owner);CHKERRQ(ierr); 425 ierr = PetscFree(nprocs);CHKERRQ(ierr); 426 427 /* actually zap the local rows */ 428 ierr = MatZeroRows(l->A,slen,lrows,diag);CHKERRQ(ierr); 429 ierr = PetscFree(lrows);CHKERRQ(ierr); 430 431 /* wait on sends */ 432 if (nsends) { 433 ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 434 ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 435 ierr = PetscFree(send_status);CHKERRQ(ierr); 436 } 437 ierr = PetscFree(send_waits);CHKERRQ(ierr); 438 ierr = PetscFree(svalues);CHKERRQ(ierr); 439 440 PetscFunctionReturn(0); 441 } 442 443 #undef __FUNCT__ 444 #define __FUNCT__ "MatMult_MPIDense" 445 PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 446 { 447 Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 448 PetscErrorCode ierr; 449 450 PetscFunctionBegin; 451 ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 452 ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 453 ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy);CHKERRQ(ierr); 454 PetscFunctionReturn(0); 455 } 456 457 #undef __FUNCT__ 458 #define __FUNCT__ "MatMultAdd_MPIDense" 459 PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 460 { 461 Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 462 PetscErrorCode ierr; 463 464 PetscFunctionBegin; 465 ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 466 ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 467 ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr); 468 PetscFunctionReturn(0); 469 } 470 471 #undef __FUNCT__ 472 #define __FUNCT__ "MatMultTranspose_MPIDense" 473 PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 474 { 475 Mat_MPIDense *a = (Mat_MPIDense*)A->data; 476 PetscErrorCode ierr; 477 PetscScalar zero = 0.0; 478 479 PetscFunctionBegin; 480 ierr = VecSet(yy,zero);CHKERRQ(ierr); 481 ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 482 ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 483 ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 484 PetscFunctionReturn(0); 485 } 486 487 #undef __FUNCT__ 488 #define __FUNCT__ "MatMultTransposeAdd_MPIDense" 489 PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 490 { 491 Mat_MPIDense *a = (Mat_MPIDense*)A->data; 492 PetscErrorCode ierr; 493 494 PetscFunctionBegin; 495 ierr = VecCopy(yy,zz);CHKERRQ(ierr); 496 ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 497 ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 498 ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 499 PetscFunctionReturn(0); 500 } 501 502 #undef __FUNCT__ 503 #define __FUNCT__ "MatGetDiagonal_MPIDense" 504 PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 505 { 506 Mat_MPIDense *a = (Mat_MPIDense*)A->data; 507 Mat_SeqDense *aloc = (Mat_SeqDense*)a->A->data; 508 PetscErrorCode ierr; 509 PetscInt len,i,n,m = A->rmap.n,radd; 510 PetscScalar *x,zero = 0.0; 511 512 PetscFunctionBegin; 513 ierr = VecSet(v,zero);CHKERRQ(ierr); 514 ierr = VecGetArray(v,&x);CHKERRQ(ierr); 515 ierr = VecGetSize(v,&n);CHKERRQ(ierr); 516 if (n != A->rmap.N) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 517 len = PetscMin(a->A->rmap.n,a->A->cmap.n); 518 radd = A->rmap.rstart*m; 519 for (i=0; i<len; i++) { 520 x[i] = aloc->v[radd + i*m + i]; 521 } 522 ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 523 PetscFunctionReturn(0); 524 } 525 526 #undef __FUNCT__ 527 #define __FUNCT__ "MatDestroy_MPIDense" 528 PetscErrorCode MatDestroy_MPIDense(Mat mat) 529 { 530 Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 531 PetscErrorCode ierr; 532 #if defined(PETSC_HAVE_PLAPACK) 533 Mat_Plapack *lu=(Mat_Plapack*)(mat->spptr); 534 #endif 535 536 PetscFunctionBegin; 537 538 #if defined(PETSC_USE_LOG) 539 PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap.N,mat->cmap.N); 540 #endif 541 ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 542 ierr = MatDestroy(mdn->A);CHKERRQ(ierr); 543 if (mdn->lvec) {ierr = VecDestroy(mdn->lvec);CHKERRQ(ierr);} 544 if (mdn->Mvctx) {ierr = VecScatterDestroy(mdn->Mvctx);CHKERRQ(ierr);} 545 #if defined(PETSC_HAVE_PLAPACK) 546 if (lu) { 547 ierr = PLA_Obj_free(&lu->A);CHKERRQ(ierr); 548 ierr = PLA_Obj_free (&lu->pivots);CHKERRQ(ierr); 549 ierr = PLA_Temp_free(&lu->templ);CHKERRQ(ierr); 550 551 if (lu->is_pla) { 552 ierr = ISDestroy(lu->is_pla);CHKERRQ(ierr); 553 ierr = ISDestroy(lu->is_petsc);CHKERRQ(ierr); 554 ierr = VecScatterDestroy(lu->ctx);CHKERRQ(ierr); 555 } 556 } 557 #endif 558 559 ierr = PetscFree(mdn);CHKERRQ(ierr); 560 ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 561 ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 562 ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMPIDenseSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 563 ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C","",PETSC_NULL);CHKERRQ(ierr); 564 ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C","",PETSC_NULL);CHKERRQ(ierr); 565 ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C","",PETSC_NULL);CHKERRQ(ierr); 566 PetscFunctionReturn(0); 567 } 568 569 #undef __FUNCT__ 570 #define __FUNCT__ "MatView_MPIDense_Binary" 571 static PetscErrorCode MatView_MPIDense_Binary(Mat mat,PetscViewer viewer) 572 { 573 Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 574 PetscErrorCode ierr; 575 PetscViewerFormat format; 576 int fd; 577 PetscInt header[4],mmax,N = mat->cmap.N,i,j,m,k; 578 PetscMPIInt rank,tag = ((PetscObject)viewer)->tag,size; 579 PetscScalar *work,*v,*vv; 580 Mat_SeqDense *a = (Mat_SeqDense*)mdn->A->data; 581 MPI_Status status; 582 583 PetscFunctionBegin; 584 if (mdn->size == 1) { 585 ierr = MatView(mdn->A,viewer);CHKERRQ(ierr); 586 } else { 587 ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 588 ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 589 ierr = MPI_Comm_size(((PetscObject)mat)->comm,&size);CHKERRQ(ierr); 590 591 ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 592 if (format == PETSC_VIEWER_BINARY_NATIVE) { 593 594 if (!rank) { 595 /* store the matrix as a dense matrix */ 596 header[0] = MAT_FILE_COOKIE; 597 header[1] = mat->rmap.N; 598 header[2] = N; 599 header[3] = MATRIX_BINARY_FORMAT_DENSE; 600 ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 601 602 /* get largest work array needed for transposing array */ 603 mmax = mat->rmap.n; 604 for (i=1; i<size; i++) { 605 mmax = PetscMax(mmax,mat->rmap.range[i+1] - mat->rmap.range[i]); 606 } 607 ierr = PetscMalloc(mmax*N*sizeof(PetscScalar),&work);CHKERRQ(ierr); 608 609 /* write out local array, by rows */ 610 m = mat->rmap.n; 611 v = a->v; 612 for (j=0; j<N; j++) { 613 for (i=0; i<m; i++) { 614 work[j + i*N] = *v++; 615 } 616 } 617 ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 618 /* get largest work array to receive messages from other processes, excludes process zero */ 619 mmax = 0; 620 for (i=1; i<size; i++) { 621 mmax = PetscMax(mmax,mat->rmap.range[i+1] - mat->rmap.range[i]); 622 } 623 ierr = PetscMalloc(mmax*N*sizeof(PetscScalar),&vv);CHKERRQ(ierr); 624 for(k = 1; k < size; k++) { 625 v = vv; 626 m = mat->rmap.range[k+1] - mat->rmap.range[k]; 627 ierr = MPI_Recv(v,m*N,MPIU_SCALAR,k,tag,((PetscObject)mat)->comm,&status);CHKERRQ(ierr); 628 629 for(j = 0; j < N; j++) { 630 for(i = 0; i < m; i++) { 631 work[j + i*N] = *v++; 632 } 633 } 634 ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 635 } 636 ierr = PetscFree(work);CHKERRQ(ierr); 637 ierr = PetscFree(vv);CHKERRQ(ierr); 638 } else { 639 ierr = MPI_Send(a->v,mat->rmap.n*mat->cmap.N,MPIU_SCALAR,0,tag,((PetscObject)mat)->comm);CHKERRQ(ierr); 640 } 641 } else { 642 SETERRQ(PETSC_ERR_SUP,"To store a parallel dense matrix you must first call PetscViewerSetFormat(viewer,PETSC_VIEWER_BINARY_NATIVE"); 643 } 644 } 645 PetscFunctionReturn(0); 646 } 647 648 #undef __FUNCT__ 649 #define __FUNCT__ "MatView_MPIDense_ASCIIorDraworSocket" 650 static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 651 { 652 Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 653 PetscErrorCode ierr; 654 PetscMPIInt size = mdn->size,rank = mdn->rank; 655 const PetscViewerType vtype; 656 PetscTruth iascii,isdraw; 657 PetscViewer sviewer; 658 PetscViewerFormat format; 659 #if defined(PETSC_HAVE_PLAPACK) 660 Mat_Plapack *lu=(Mat_Plapack*)(mat->spptr); 661 #endif 662 663 PetscFunctionBegin; 664 ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 665 ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 666 if (iascii) { 667 ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr); 668 ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 669 if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 670 MatInfo info; 671 ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 672 ierr = PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap.n, 673 (PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr); 674 ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 675 ierr = VecScatterView(mdn->Mvctx,viewer);CHKERRQ(ierr); 676 #if defined(PETSC_HAVE_PLAPACK) 677 ierr = PetscViewerASCIIPrintf(viewer,"PLAPACK run parameters:\n");CHKERRQ(ierr); 678 ierr = PetscViewerASCIIPrintf(viewer," Processor mesh: nprows %d, npcols %d\n",Plapack_nprows, Plapack_npcols);CHKERRQ(ierr); 679 ierr = PetscViewerASCIIPrintf(viewer," Distr. block size nb: %d \n",lu->nb);CHKERRQ(ierr); 680 ierr = PetscViewerASCIIPrintf(viewer," Error checking: %d\n",Plapack_ierror);CHKERRQ(ierr); 681 ierr = PetscViewerASCIIPrintf(viewer," Algorithmic block size: %d\n",Plapack_nb_alg);CHKERRQ(ierr); 682 #endif 683 PetscFunctionReturn(0); 684 } else if (format == PETSC_VIEWER_ASCII_INFO) { 685 PetscFunctionReturn(0); 686 } 687 } else if (isdraw) { 688 PetscDraw draw; 689 PetscTruth isnull; 690 691 ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 692 ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 693 if (isnull) PetscFunctionReturn(0); 694 } 695 696 if (size == 1) { 697 ierr = MatView(mdn->A,viewer);CHKERRQ(ierr); 698 } else { 699 /* assemble the entire matrix onto first processor. */ 700 Mat A; 701 PetscInt M = mat->rmap.N,N = mat->cmap.N,m,row,i,nz; 702 PetscInt *cols; 703 PetscScalar *vals; 704 705 ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr); 706 if (!rank) { 707 ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 708 } else { 709 ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 710 } 711 /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 712 ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr); 713 ierr = MatMPIDenseSetPreallocation(A,PETSC_NULL); 714 ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 715 716 /* Copy the matrix ... This isn't the most efficient means, 717 but it's quick for now */ 718 A->insertmode = INSERT_VALUES; 719 row = mat->rmap.rstart; m = mdn->A->rmap.n; 720 for (i=0; i<m; i++) { 721 ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 722 ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 723 ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 724 row++; 725 } 726 727 ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 728 ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 729 ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 730 if (!rank) { 731 ierr = MatView(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr); 732 } 733 ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 734 ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 735 ierr = MatDestroy(A);CHKERRQ(ierr); 736 } 737 PetscFunctionReturn(0); 738 } 739 740 #undef __FUNCT__ 741 #define __FUNCT__ "MatView_MPIDense" 742 PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 743 { 744 PetscErrorCode ierr; 745 PetscTruth iascii,isbinary,isdraw,issocket; 746 747 PetscFunctionBegin; 748 749 ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 750 ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 751 ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 752 ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 753 754 if (iascii || issocket || isdraw) { 755 ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 756 } else if (isbinary) { 757 ierr = MatView_MPIDense_Binary(mat,viewer);CHKERRQ(ierr); 758 } else { 759 SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPI dense matrix",((PetscObject)viewer)->type_name); 760 } 761 PetscFunctionReturn(0); 762 } 763 764 #undef __FUNCT__ 765 #define __FUNCT__ "MatGetInfo_MPIDense" 766 PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 767 { 768 Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 769 Mat mdn = mat->A; 770 PetscErrorCode ierr; 771 PetscReal isend[5],irecv[5]; 772 773 PetscFunctionBegin; 774 info->rows_global = (double)A->rmap.N; 775 info->columns_global = (double)A->cmap.N; 776 info->rows_local = (double)A->rmap.n; 777 info->columns_local = (double)A->cmap.N; 778 info->block_size = 1.0; 779 ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr); 780 isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 781 isend[3] = info->memory; isend[4] = info->mallocs; 782 if (flag == MAT_LOCAL) { 783 info->nz_used = isend[0]; 784 info->nz_allocated = isend[1]; 785 info->nz_unneeded = isend[2]; 786 info->memory = isend[3]; 787 info->mallocs = isend[4]; 788 } else if (flag == MAT_GLOBAL_MAX) { 789 ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)A)->comm);CHKERRQ(ierr); 790 info->nz_used = irecv[0]; 791 info->nz_allocated = irecv[1]; 792 info->nz_unneeded = irecv[2]; 793 info->memory = irecv[3]; 794 info->mallocs = irecv[4]; 795 } else if (flag == MAT_GLOBAL_SUM) { 796 ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)A)->comm);CHKERRQ(ierr); 797 info->nz_used = irecv[0]; 798 info->nz_allocated = irecv[1]; 799 info->nz_unneeded = irecv[2]; 800 info->memory = irecv[3]; 801 info->mallocs = irecv[4]; 802 } 803 info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 804 info->fill_ratio_needed = 0; 805 info->factor_mallocs = 0; 806 PetscFunctionReturn(0); 807 } 808 809 #undef __FUNCT__ 810 #define __FUNCT__ "MatSetOption_MPIDense" 811 PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscTruth flg) 812 { 813 Mat_MPIDense *a = (Mat_MPIDense*)A->data; 814 PetscErrorCode ierr; 815 816 PetscFunctionBegin; 817 switch (op) { 818 case MAT_NEW_NONZERO_LOCATIONS: 819 case MAT_NEW_NONZERO_LOCATION_ERR: 820 case MAT_NEW_NONZERO_ALLOCATION_ERR: 821 ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 822 break; 823 case MAT_ROW_ORIENTED: 824 a->roworiented = flg; 825 ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 826 break; 827 case MAT_NEW_DIAGONALS: 828 case MAT_USE_HASH_TABLE: 829 ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 830 break; 831 case MAT_IGNORE_OFF_PROC_ENTRIES: 832 a->donotstash = flg; 833 break; 834 case MAT_SYMMETRIC: 835 case MAT_STRUCTURALLY_SYMMETRIC: 836 case MAT_HERMITIAN: 837 case MAT_SYMMETRY_ETERNAL: 838 case MAT_IGNORE_LOWER_TRIANGULAR: 839 ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 840 break; 841 default: 842 SETERRQ1(PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 843 } 844 PetscFunctionReturn(0); 845 } 846 847 848 #undef __FUNCT__ 849 #define __FUNCT__ "MatDiagonalScale_MPIDense" 850 PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 851 { 852 Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 853 Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 854 PetscScalar *l,*r,x,*v; 855 PetscErrorCode ierr; 856 PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap.n,n=mdn->A->cmap.n; 857 858 PetscFunctionBegin; 859 ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr); 860 if (ll) { 861 ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr); 862 if (s2a != s2) SETERRQ2(PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %d != %d.", s2a, s2); 863 ierr = VecGetArray(ll,&l);CHKERRQ(ierr); 864 for (i=0; i<m; i++) { 865 x = l[i]; 866 v = mat->v + i; 867 for (j=0; j<n; j++) { (*v) *= x; v+= m;} 868 } 869 ierr = VecRestoreArray(ll,&l);CHKERRQ(ierr); 870 ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 871 } 872 if (rr) { 873 ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr); 874 if (s3a != s3) SETERRQ2(PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3); 875 ierr = VecScatterBegin(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 876 ierr = VecScatterEnd(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 877 ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr); 878 for (i=0; i<n; i++) { 879 x = r[i]; 880 v = mat->v + i*m; 881 for (j=0; j<m; j++) { (*v++) *= x;} 882 } 883 ierr = VecRestoreArray(mdn->lvec,&r);CHKERRQ(ierr); 884 ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 885 } 886 PetscFunctionReturn(0); 887 } 888 889 #undef __FUNCT__ 890 #define __FUNCT__ "MatNorm_MPIDense" 891 PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 892 { 893 Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 894 Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 895 PetscErrorCode ierr; 896 PetscInt i,j; 897 PetscReal sum = 0.0; 898 PetscScalar *v = mat->v; 899 900 PetscFunctionBegin; 901 if (mdn->size == 1) { 902 ierr = MatNorm(mdn->A,type,nrm);CHKERRQ(ierr); 903 } else { 904 if (type == NORM_FROBENIUS) { 905 for (i=0; i<mdn->A->cmap.n*mdn->A->rmap.n; i++) { 906 #if defined(PETSC_USE_COMPLEX) 907 sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 908 #else 909 sum += (*v)*(*v); v++; 910 #endif 911 } 912 ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,((PetscObject)A)->comm);CHKERRQ(ierr); 913 *nrm = sqrt(*nrm); 914 ierr = PetscLogFlops(2*mdn->A->cmap.n*mdn->A->rmap.n);CHKERRQ(ierr); 915 } else if (type == NORM_1) { 916 PetscReal *tmp,*tmp2; 917 ierr = PetscMalloc(2*A->cmap.N*sizeof(PetscReal),&tmp);CHKERRQ(ierr); 918 tmp2 = tmp + A->cmap.N; 919 ierr = PetscMemzero(tmp,2*A->cmap.N*sizeof(PetscReal));CHKERRQ(ierr); 920 *nrm = 0.0; 921 v = mat->v; 922 for (j=0; j<mdn->A->cmap.n; j++) { 923 for (i=0; i<mdn->A->rmap.n; i++) { 924 tmp[j] += PetscAbsScalar(*v); v++; 925 } 926 } 927 ierr = MPI_Allreduce(tmp,tmp2,A->cmap.N,MPIU_REAL,MPI_SUM,((PetscObject)A)->comm);CHKERRQ(ierr); 928 for (j=0; j<A->cmap.N; j++) { 929 if (tmp2[j] > *nrm) *nrm = tmp2[j]; 930 } 931 ierr = PetscFree(tmp);CHKERRQ(ierr); 932 ierr = PetscLogFlops(A->cmap.n*A->rmap.n);CHKERRQ(ierr); 933 } else if (type == NORM_INFINITY) { /* max row norm */ 934 PetscReal ntemp; 935 ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr); 936 ierr = MPI_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPI_MAX,((PetscObject)A)->comm);CHKERRQ(ierr); 937 } else { 938 SETERRQ(PETSC_ERR_SUP,"No support for two norm"); 939 } 940 } 941 PetscFunctionReturn(0); 942 } 943 944 #undef __FUNCT__ 945 #define __FUNCT__ "MatTranspose_MPIDense" 946 PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 947 { 948 Mat_MPIDense *a = (Mat_MPIDense*)A->data; 949 Mat_SeqDense *Aloc = (Mat_SeqDense*)a->A->data; 950 Mat B; 951 PetscInt M = A->rmap.N,N = A->cmap.N,m,n,*rwork,rstart = A->rmap.rstart; 952 PetscErrorCode ierr; 953 PetscInt j,i; 954 PetscScalar *v; 955 956 PetscFunctionBegin; 957 if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(PETSC_ERR_SUP,"Supports square matrix only in-place"); 958 if (reuse == MAT_INITIAL_MATRIX || A == *matout) { 959 ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr); 960 ierr = MatSetSizes(B,PETSC_DECIDE,PETSC_DECIDE,N,M);CHKERRQ(ierr); 961 ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 962 ierr = MatMPIDenseSetPreallocation(B,PETSC_NULL);CHKERRQ(ierr); 963 } else { 964 B = *matout; 965 } 966 967 m = a->A->rmap.n; n = a->A->cmap.n; v = Aloc->v; 968 ierr = PetscMalloc(m*sizeof(PetscInt),&rwork);CHKERRQ(ierr); 969 for (i=0; i<m; i++) rwork[i] = rstart + i; 970 for (j=0; j<n; j++) { 971 ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr); 972 v += m; 973 } 974 ierr = PetscFree(rwork);CHKERRQ(ierr); 975 ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 976 ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 977 if (reuse == MAT_INITIAL_MATRIX || *matout != A) { 978 *matout = B; 979 } else { 980 ierr = MatHeaderCopy(A,B);CHKERRQ(ierr); 981 } 982 PetscFunctionReturn(0); 983 } 984 985 #include "petscblaslapack.h" 986 #undef __FUNCT__ 987 #define __FUNCT__ "MatScale_MPIDense" 988 PetscErrorCode MatScale_MPIDense(Mat inA,PetscScalar alpha) 989 { 990 Mat_MPIDense *A = (Mat_MPIDense*)inA->data; 991 Mat_SeqDense *a = (Mat_SeqDense*)A->A->data; 992 PetscScalar oalpha = alpha; 993 PetscErrorCode ierr; 994 PetscBLASInt one = 1,nz = PetscBLASIntCast(inA->rmap.n*inA->cmap.N); 995 996 PetscFunctionBegin; 997 BLASscal_(&nz,&oalpha,a->v,&one); 998 ierr = PetscLogFlops(nz);CHKERRQ(ierr); 999 PetscFunctionReturn(0); 1000 } 1001 1002 static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat *); 1003 1004 #undef __FUNCT__ 1005 #define __FUNCT__ "MatSetUpPreallocation_MPIDense" 1006 PetscErrorCode MatSetUpPreallocation_MPIDense(Mat A) 1007 { 1008 PetscErrorCode ierr; 1009 1010 PetscFunctionBegin; 1011 ierr = MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr); 1012 PetscFunctionReturn(0); 1013 } 1014 1015 #if defined(PETSC_HAVE_PLAPACK) 1016 1017 #undef __FUNCT__ 1018 #define __FUNCT__ "MatMPIDenseCopyToPlapack" 1019 PetscErrorCode MatMPIDenseCopyToPlapack(Mat A,Mat F) 1020 { 1021 Mat_Plapack *lu = (Mat_Plapack*)(F)->spptr; 1022 PetscErrorCode ierr; 1023 PetscInt M=A->cmap.N,m=A->rmap.n,rstart; 1024 PetscScalar *array; 1025 PetscReal one = 1.0; 1026 1027 PetscFunctionBegin; 1028 /* Copy A into F->lu->A */ 1029 ierr = PLA_Obj_set_to_zero(lu->A);CHKERRQ(ierr); 1030 ierr = PLA_API_begin();CHKERRQ(ierr); 1031 ierr = PLA_Obj_API_open(lu->A);CHKERRQ(ierr); 1032 ierr = MatGetOwnershipRange(A,&rstart,PETSC_NULL);CHKERRQ(ierr); 1033 ierr = MatGetArray(A,&array);CHKERRQ(ierr); 1034 ierr = PLA_API_axpy_matrix_to_global(m,M, &one,(void *)array,m,lu->A,rstart,0);CHKERRQ(ierr); 1035 ierr = MatRestoreArray(A,&array);CHKERRQ(ierr); 1036 ierr = PLA_Obj_API_close(lu->A);CHKERRQ(ierr); 1037 ierr = PLA_API_end();CHKERRQ(ierr); 1038 lu->rstart = rstart; 1039 PetscFunctionReturn(0); 1040 } 1041 1042 #undef __FUNCT__ 1043 #define __FUNCT__ "MatMPIDenseCopyFromPlapack" 1044 PetscErrorCode MatMPIDenseCopyFromPlapack(Mat F,Mat A) 1045 { 1046 Mat_Plapack *lu = (Mat_Plapack*)(F)->spptr; 1047 PetscErrorCode ierr; 1048 PetscInt M=A->cmap.N,m=A->rmap.n,rstart; 1049 PetscScalar *array; 1050 PetscReal one = 1.0; 1051 1052 PetscFunctionBegin; 1053 /* Copy F into A->lu->A */ 1054 ierr = MatZeroEntries(A);CHKERRQ(ierr); 1055 ierr = PLA_API_begin();CHKERRQ(ierr); 1056 ierr = PLA_Obj_API_open(lu->A);CHKERRQ(ierr); 1057 ierr = MatGetOwnershipRange(A,&rstart,PETSC_NULL);CHKERRQ(ierr); 1058 ierr = MatGetArray(A,&array);CHKERRQ(ierr); 1059 ierr = PLA_API_axpy_global_to_matrix(m,M, &one,lu->A,rstart,0,(void *)array,m);CHKERRQ(ierr); 1060 ierr = MatRestoreArray(A,&array);CHKERRQ(ierr); 1061 ierr = PLA_Obj_API_close(lu->A);CHKERRQ(ierr); 1062 ierr = PLA_API_end();CHKERRQ(ierr); 1063 lu->rstart = rstart; 1064 PetscFunctionReturn(0); 1065 } 1066 1067 #undef __FUNCT__ 1068 #define __FUNCT__ "MatMatMultNumeric_MPIDense_MPIDense" 1069 PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 1070 { 1071 PetscErrorCode ierr; 1072 Mat_Plapack *luA = (Mat_Plapack*)A->spptr; 1073 Mat_Plapack *luB = (Mat_Plapack*)B->spptr; 1074 Mat_Plapack *luC = (Mat_Plapack*)C->spptr; 1075 PLA_Obj alpha = NULL,beta = NULL; 1076 1077 PetscFunctionBegin; 1078 ierr = MatMPIDenseCopyToPlapack(A,A);CHKERRQ(ierr); 1079 ierr = MatMPIDenseCopyToPlapack(B,B);CHKERRQ(ierr); 1080 1081 /* 1082 ierr = PLA_Global_show("A = ",luA->A,"%g ","");CHKERRQ(ierr); 1083 ierr = PLA_Global_show("B = ",luB->A,"%g ","");CHKERRQ(ierr); 1084 */ 1085 1086 /* do the multiply in PLA */ 1087 ierr = PLA_Create_constants_conf_to(luA->A,NULL,NULL,&alpha);CHKERRQ(ierr); 1088 ierr = PLA_Create_constants_conf_to(luC->A,NULL,&beta,NULL);CHKERRQ(ierr); 1089 CHKMEMQ; 1090 1091 ierr = PLA_Gemm(PLA_NO_TRANSPOSE,PLA_NO_TRANSPOSE,alpha,luA->A,luB->A,beta,luC->A); /* CHKERRQ(ierr); */ 1092 CHKMEMQ; 1093 ierr = PLA_Obj_free(&alpha);CHKERRQ(ierr); 1094 ierr = PLA_Obj_free(&beta);CHKERRQ(ierr); 1095 1096 /* 1097 ierr = PLA_Global_show("C = ",luC->A,"%g ","");CHKERRQ(ierr); 1098 */ 1099 ierr = MatMPIDenseCopyFromPlapack(C,C);CHKERRQ(ierr); 1100 PetscFunctionReturn(0); 1101 } 1102 1103 #undef __FUNCT__ 1104 #define __FUNCT__ "MatMatMultSymbolic_MPIDense_MPIDense" 1105 PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C) 1106 { 1107 PetscErrorCode ierr; 1108 PetscInt m=A->rmap.n,n=B->cmap.n; 1109 Mat Cmat; 1110 1111 PetscFunctionBegin; 1112 if (A->cmap.n != B->rmap.n) SETERRQ2(PETSC_ERR_ARG_SIZ,"A->cmap.n %d != B->rmap.n %d\n",A->cmap.n,B->rmap.n); 1113 SETERRQ(PETSC_ERR_LIB,"Due to aparent bugs in PLAPACK,this is not currently supported"); 1114 ierr = MatCreate(((PetscObject)B)->comm,&Cmat);CHKERRQ(ierr); 1115 ierr = MatSetSizes(Cmat,m,n,A->rmap.N,B->cmap.N);CHKERRQ(ierr); 1116 ierr = MatSetType(Cmat,MATMPIDENSE);CHKERRQ(ierr); 1117 ierr = MatAssemblyBegin(Cmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1118 ierr = MatAssemblyEnd(Cmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1119 //ierr = MatMPIDenseCreatePlapack(A);CHKERRQ(ierr); 1120 //ierr = MatMPIDenseCreatePlapack(B);CHKERRQ(ierr); 1121 //ierr = MatMPIDenseCreatePlapack(Cmat);CHKERRQ(ierr); 1122 *C = Cmat; 1123 PetscFunctionReturn(0); 1124 } 1125 1126 #undef __FUNCT__ 1127 #define __FUNCT__ "MatMatMult_MPIDense_MPIDense" 1128 PetscErrorCode MatMatMult_MPIDense_MPIDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 1129 { 1130 PetscErrorCode ierr; 1131 1132 PetscFunctionBegin; 1133 if (scall == MAT_INITIAL_MATRIX){ 1134 ierr = MatMatMultSymbolic_MPIDense_MPIDense(A,B,fill,C);CHKERRQ(ierr); 1135 } 1136 ierr = MatMatMultNumeric_MPIDense_MPIDense(A,B,*C);CHKERRQ(ierr); 1137 PetscFunctionReturn(0); 1138 } 1139 1140 #undef __FUNCT__ 1141 #define __FUNCT__ "MatFactorSymbolic_Plapack_Private" 1142 PetscErrorCode MatFactorSymbolic_Plapack_Private(Mat A,MatFactorInfo *info,Mat *F) 1143 { 1144 Mat B = *F; 1145 Mat_Plapack *lu; 1146 PetscErrorCode ierr; 1147 PetscInt M=A->rmap.N,N=A->cmap.N; 1148 MPI_Comm comm=((PetscObject)A)->comm,comm_2d; 1149 PetscMPIInt size; 1150 PetscInt ierror; 1151 1152 PetscFunctionBegin; 1153 lu = (Mat_Plapack*)(B->spptr); 1154 1155 /* Set default Plapack parameters */ 1156 ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1157 lu->nprows = 1; lu->npcols = size; 1158 ierror = 0; 1159 lu->nb = M/size; 1160 if (M - lu->nb*size) lu->nb++; /* without cyclic distribution */ 1161 1162 /* Set runtime options */ 1163 ierr = PetscOptionsBegin(((PetscObject)A)->comm,((PetscObject)A)->prefix,"PLAPACK Options","Mat");CHKERRQ(ierr); 1164 ierr = PetscOptionsInt("-mat_plapack_nprows","row dimension of 2D processor mesh","None",lu->nprows,&lu->nprows,PETSC_NULL);CHKERRQ(ierr); 1165 ierr = PetscOptionsInt("-mat_plapack_npcols","column dimension of 2D processor mesh","None",lu->npcols,&lu->npcols,PETSC_NULL);CHKERRQ(ierr); 1166 1167 ierr = PetscOptionsInt("-mat_plapack_nb","block size of template vector","None",lu->nb,&lu->nb,PETSC_NULL);CHKERRQ(ierr); 1168 ierr = PetscOptionsInt("-mat_plapack_ckerror","error checking flag","None",ierror,&ierror,PETSC_NULL);CHKERRQ(ierr); 1169 if (ierror){ 1170 PLA_Set_error_checking(ierror,PETSC_TRUE,PETSC_TRUE,PETSC_FALSE ); 1171 } else { 1172 PLA_Set_error_checking(ierror,PETSC_FALSE,PETSC_FALSE,PETSC_FALSE ); 1173 } 1174 lu->ierror = ierror; 1175 1176 lu->nb_alg = 0; 1177 ierr = PetscOptionsInt("-mat_plapack_nb_alg","algorithmic block size","None",lu->nb_alg,&lu->nb_alg,PETSC_NULL);CHKERRQ(ierr); 1178 if (lu->nb_alg){ 1179 pla_Environ_set_nb_alg (PLA_OP_ALL_ALG,lu->nb_alg); 1180 } 1181 PetscOptionsEnd(); 1182 1183 1184 /* Create a 2D communicator */ 1185 PLA_Comm_1D_to_2D(comm,lu->nprows,lu->npcols,&comm_2d); 1186 lu->comm_2d = comm_2d; 1187 1188 /* Initialize PLAPACK */ 1189 PLA_Init(comm_2d); 1190 1191 /* Create object distribution template */ 1192 lu->templ = NULL; 1193 PLA_Temp_create(lu->nb, 0, &lu->templ); 1194 1195 /* Use suggested nb_alg if it is not provided by user */ 1196 if (lu->nb_alg == 0){ 1197 PLA_Environ_nb_alg(PLA_OP_PAN_PAN,lu->templ,&lu->nb_alg); 1198 pla_Environ_set_nb_alg(PLA_OP_ALL_ALG,lu->nb_alg); 1199 } 1200 1201 /* Set the datatype */ 1202 #if defined(PETSC_USE_COMPLEX) 1203 lu->datatype = MPI_DOUBLE_COMPLEX; 1204 #else 1205 lu->datatype = MPI_DOUBLE; 1206 #endif 1207 1208 lu->pla_solved = PETSC_FALSE; /* MatSolve_Plapack() is called yet */ 1209 lu->mstruct = DIFFERENT_NONZERO_PATTERN; 1210 lu->CleanUpPlapack = PETSC_TRUE; 1211 *F = B; 1212 PetscFunctionReturn(0); 1213 } 1214 1215 /* Note the Petsc perm permutation is ignored */ 1216 #undef __FUNCT__ 1217 #define __FUNCT__ "MatCholeskyFactorSymbolic_Plapack" 1218 PetscErrorCode MatCholeskyFactorSymbolic_Plapack(Mat A,IS perm,MatFactorInfo *info,Mat *F) 1219 { 1220 PetscErrorCode ierr; 1221 PetscTruth issymmetric,set; 1222 1223 PetscFunctionBegin; 1224 ierr = MatIsSymmetricKnown(A,&set,&issymmetric); CHKERRQ(ierr); 1225 if (!set || !issymmetric) SETERRQ(PETSC_ERR_USER,"Matrix must be set as MAT_SYMMETRIC for CholeskyFactor()"); 1226 ierr = MatFactorSymbolic_Plapack_Private(A,info,F);CHKERRQ(ierr); 1227 (*F)->factor = MAT_FACTOR_CHOLESKY; 1228 PetscFunctionReturn(0); 1229 } 1230 1231 /* Note the Petsc r and c permutations are ignored */ 1232 #undef __FUNCT__ 1233 #define __FUNCT__ "MatLUFactorSymbolic_Plapack" 1234 PetscErrorCode MatLUFactorSymbolic_Plapack(Mat A,IS r,IS c,MatFactorInfo *info,Mat *F) 1235 { 1236 PetscErrorCode ierr; 1237 PetscInt M = A->rmap.N; 1238 Mat_Plapack *lu; 1239 1240 PetscFunctionBegin; 1241 ierr = MatFactorSymbolic_Plapack_Private(A,info,F);CHKERRQ(ierr); 1242 lu = (Mat_Plapack*)(*F)->spptr; 1243 ierr = PLA_Mvector_create(MPI_INT,M,1,lu->templ,PLA_ALIGN_FIRST,&lu->pivots);CHKERRQ(ierr); 1244 (*F)->factor = MAT_FACTOR_LU; 1245 PetscFunctionReturn(0); 1246 } 1247 1248 #undef __FUNCT__ 1249 #define __FUNCT__ "MatGetFactor_mpidense_plapack" 1250 PetscErrorCode MatGetFactor_mpidense_plapack(Mat A,MatFactorType ftype,Mat *F) 1251 { 1252 PetscErrorCode ierr; 1253 1254 PetscFunctionBegin; 1255 /* Create the factorization matrix */ 1256 ierr = MatCreate(((PetscObject)A)->comm,F);CHKERRQ(ierr); 1257 ierr = MatSetSizes(*F,A->rmap.n,A->cmap.n,A->rmap.N,A->cmap.N);CHKERRQ(ierr); 1258 ierr = MatSetType(*F,((PetscObject)A)->type_name);CHKERRQ(ierr); 1259 ierr = PetscNewLog(A,Mat_Plapack,&lu);CHKERRQ(ierr); 1260 A->spptr = (void*)lu; 1261 1262 lu = (Mat_Plapack*)(A->spptr); 1263 1264 /* Set default Plapack parameters */ 1265 ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1266 lu->nb = M/size; 1267 if (M - lu->nb*size) lu->nb++; /* without cyclic distribution */ 1268 1269 /* Set runtime options */ 1270 ierr = PetscOptionsBegin(((PetscObject)A)->comm,((PetscObject)A)->prefix,"PLAPACK Options","Mat");CHKERRQ(ierr); 1271 ierr = PetscOptionsInt("-mat_plapack_nb","block size of template vector","None",lu->nb,&lu->nb,PETSC_NULL);CHKERRQ(ierr); 1272 PetscOptionsEnd(); 1273 1274 /* Create object distribution template */ 1275 lu->templ = NULL; 1276 ierr = PLA_Temp_create(lu->nb, 0, &lu->templ);CHKERRQ(ierr); 1277 1278 /* Set the datatype */ 1279 #if defined(PETSC_USE_COMPLEX) 1280 lu->datatype = MPI_DOUBLE_COMPLEX; 1281 #else 1282 lu->datatype = MPI_DOUBLE; 1283 #endif 1284 1285 ierr = PLA_Matrix_create(lu->datatype,M,A->cmap.N,lu->templ,PLA_ALIGN_FIRST,PLA_ALIGN_FIRST,&lu->A);CHKERRQ(ierr); 1286 1287 1288 lu->pla_solved = PETSC_FALSE; /* MatSolve_Plapack() is called yet */ 1289 1290 if (ftype == MAT_FACTOR_LU) { 1291 (*F)->ops->lufactorsymbolic = MatLUFactorSymbolic_MPIDense; 1292 (*F)->ops->lufactornumeric = MatLUFactorNumeric_MPIDense; 1293 (*F)->ops->solve = MatSolve_MPIDense; 1294 } else if (ftype == MAT_FACTOR_CHOLESKY) { 1295 (*F)->ops->choleksyfactorsymbolic = MatCholeskyFactorSymbolic_MPIDense; 1296 (*F)->ops->choleskyfactornumeric = MatCholeksyFactorNumeric_MPIDense; 1297 (*F)->ops->solve = MatSolve_MPIDense; 1298 } else SETERRQ(PETSC_ERR_SUP,"No incomplete factorizations for dense matrices"); 1299 1300 PetscFunctionReturn(0); 1301 } 1302 #endif 1303 1304 /* -------------------------------------------------------------------*/ 1305 static struct _MatOps MatOps_Values = {MatSetValues_MPIDense, 1306 MatGetRow_MPIDense, 1307 MatRestoreRow_MPIDense, 1308 MatMult_MPIDense, 1309 /* 4*/ MatMultAdd_MPIDense, 1310 MatMultTranspose_MPIDense, 1311 MatMultTransposeAdd_MPIDense, 1312 #if defined(PETSC_HAVE_PLAPACK) 1313 MatSolve_MPIDense, 1314 #else 1315 0, 1316 #endif 1317 0, 1318 0, 1319 /*10*/ 0, 1320 0, 1321 0, 1322 0, 1323 MatTranspose_MPIDense, 1324 /*15*/ MatGetInfo_MPIDense, 1325 MatEqual_MPIDense, 1326 MatGetDiagonal_MPIDense, 1327 MatDiagonalScale_MPIDense, 1328 MatNorm_MPIDense, 1329 /*20*/ MatAssemblyBegin_MPIDense, 1330 MatAssemblyEnd_MPIDense, 1331 0, 1332 MatSetOption_MPIDense, 1333 MatZeroEntries_MPIDense, 1334 /*25*/ MatZeroRows_MPIDense, 1335 #if defined(PETSC_HAVE_PLAPACK) 1336 MatLUFactorSymbolic_MPIDense, 1337 MatLUFactorNumeric_MPIDense, 1338 MatCholeskyFactorSymbolic_MPIDense, 1339 MatCholeskyFactorNumeric_MPIDense, 1340 #else 1341 0, 1342 0, 1343 0, 1344 0, 1345 #endif 1346 /*30*/ MatSetUpPreallocation_MPIDense, 1347 0, 1348 0, 1349 MatGetArray_MPIDense, 1350 MatRestoreArray_MPIDense, 1351 /*35*/ MatDuplicate_MPIDense, 1352 0, 1353 0, 1354 0, 1355 0, 1356 /*40*/ 0, 1357 MatGetSubMatrices_MPIDense, 1358 0, 1359 MatGetValues_MPIDense, 1360 0, 1361 /*45*/ 0, 1362 MatScale_MPIDense, 1363 0, 1364 0, 1365 0, 1366 /*50*/ 0, 1367 0, 1368 0, 1369 0, 1370 0, 1371 /*55*/ 0, 1372 0, 1373 0, 1374 0, 1375 0, 1376 /*60*/ MatGetSubMatrix_MPIDense, 1377 MatDestroy_MPIDense, 1378 MatView_MPIDense, 1379 0, 1380 0, 1381 /*65*/ 0, 1382 0, 1383 0, 1384 0, 1385 0, 1386 /*70*/ 0, 1387 0, 1388 0, 1389 0, 1390 0, 1391 /*75*/ 0, 1392 0, 1393 0, 1394 0, 1395 0, 1396 /*80*/ 0, 1397 0, 1398 0, 1399 0, 1400 /*84*/ MatLoad_MPIDense, 1401 0, 1402 0, 1403 0, 1404 0, 1405 0, 1406 /*90*/ 1407 #if defined(PETSC_HAVE_PLAPACK) 1408 MatMatMult_MPIDense_MPIDense, 1409 MatMatMultSymbolic_MPIDense_MPIDense, 1410 MatMatMultNumeric_MPIDense_MPIDense, 1411 #else 1412 0, 1413 0, 1414 0, 1415 #endif 1416 0, 1417 /*95*/ 0, 1418 0, 1419 0, 1420 0}; 1421 1422 EXTERN_C_BEGIN 1423 #undef __FUNCT__ 1424 #define __FUNCT__ "MatMPIDenseSetPreallocation_MPIDense" 1425 PetscErrorCode PETSCMAT_DLLEXPORT MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1426 { 1427 Mat_MPIDense *a; 1428 PetscErrorCode ierr; 1429 1430 PetscFunctionBegin; 1431 mat->preallocated = PETSC_TRUE; 1432 /* Note: For now, when data is specified above, this assumes the user correctly 1433 allocates the local dense storage space. We should add error checking. */ 1434 1435 a = (Mat_MPIDense*)mat->data; 1436 ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr); 1437 ierr = MatSetSizes(a->A,mat->rmap.n,mat->cmap.N,mat->rmap.n,mat->cmap.N);CHKERRQ(ierr); 1438 ierr = MatSetType(a->A,MATSEQDENSE);CHKERRQ(ierr); 1439 ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr); 1440 ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 1441 PetscFunctionReturn(0); 1442 } 1443 EXTERN_C_END 1444 1445 /*MC 1446 MATMPIDENSE - MATMPIDENSE = "mpidense" - A matrix type to be used for distributed dense matrices. 1447 1448 Options Database Keys: 1449 . -mat_type mpidense - sets the matrix type to "mpidense" during a call to MatSetFromOptions() 1450 1451 Level: beginner 1452 1453 MATMPIDENSE matrices may use direct solvers (LU, Cholesky, and QR) 1454 for parallel dense matrices via the external package PLAPACK, if PLAPACK is installed 1455 (run config/configure.py with the option --download-plapack) 1456 1457 1458 Options Database Keys: 1459 . -mat_plapack_nprows <n> - number of rows in processor partition 1460 . -mat_plapack_npcols <n> - number of columns in processor partition 1461 . -mat_plapack_nb <n> - block size of template vector 1462 . -mat_plapack_nb_alg <n> - algorithmic block size 1463 - -mat_plapack_ckerror <n> - error checking flag 1464 1465 .seealso: MatCreateMPIDense(), MATDENSE, MATSEQDENSE 1466 M*/ 1467 1468 EXTERN_C_BEGIN 1469 #undef __FUNCT__ 1470 #define __FUNCT__ "MatCreate_MPIDense" 1471 PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIDense(Mat mat) 1472 { 1473 Mat_MPIDense *a; 1474 PetscErrorCode ierr; 1475 1476 PetscFunctionBegin; 1477 ierr = PetscNewLog(mat,Mat_MPIDense,&a);CHKERRQ(ierr); 1478 mat->data = (void*)a; 1479 ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1480 mat->mapping = 0; 1481 1482 mat->insertmode = NOT_SET_VALUES; 1483 ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&a->rank);CHKERRQ(ierr); 1484 ierr = MPI_Comm_size(((PetscObject)mat)->comm,&a->size);CHKERRQ(ierr); 1485 1486 mat->rmap.bs = mat->cmap.bs = 1; 1487 ierr = PetscMapSetUp(&mat->rmap);CHKERRQ(ierr); 1488 ierr = PetscMapSetUp(&mat->cmap);CHKERRQ(ierr); 1489 a->nvec = mat->cmap.n; 1490 1491 /* build cache for off array entries formed */ 1492 a->donotstash = PETSC_FALSE; 1493 ierr = MatStashCreate_Private(((PetscObject)mat)->comm,1,&mat->stash);CHKERRQ(ierr); 1494 1495 /* stuff used for matrix vector multiply */ 1496 a->lvec = 0; 1497 a->Mvctx = 0; 1498 a->roworiented = PETSC_TRUE; 1499 1500 ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatGetDiagonalBlock_C", 1501 "MatGetDiagonalBlock_MPIDense", 1502 MatGetDiagonalBlock_MPIDense);CHKERRQ(ierr); 1503 ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMPIDenseSetPreallocation_C", 1504 "MatMPIDenseSetPreallocation_MPIDense", 1505 MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr); 1506 ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C", 1507 "MatMatMult_MPIAIJ_MPIDense", 1508 MatMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr); 1509 ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C", 1510 "MatMatMultSymbolic_MPIAIJ_MPIDense", 1511 MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 1512 ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C", 1513 "MatMatMultNumeric_MPIAIJ_MPIDense", 1514 MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 1515 #if defined(PETSC_HAVE_PLAPACK) 1516 ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatGetFactor_mpidense_plapack_C", 1517 "MatGetFactor_mpidense_plapack", 1518 MatGetFactor_mpidense_plapack);CHKERRQ(ierr); 1519 #endif 1520 ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr); 1521 1522 PetscFunctionReturn(0); 1523 } 1524 EXTERN_C_END 1525 1526 /*MC 1527 MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1528 1529 This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 1530 and MATMPIDENSE otherwise. 1531 1532 Options Database Keys: 1533 . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 1534 1535 Level: beginner 1536 1537 1538 .seealso: MatCreateMPIDense,MATSEQDENSE,MATMPIDENSE 1539 M*/ 1540 1541 EXTERN_C_BEGIN 1542 #undef __FUNCT__ 1543 #define __FUNCT__ "MatCreate_Dense" 1544 PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_Dense(Mat A) 1545 { 1546 PetscErrorCode ierr; 1547 PetscMPIInt size; 1548 1549 PetscFunctionBegin; 1550 ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 1551 if (size == 1) { 1552 ierr = MatSetType(A,MATSEQDENSE);CHKERRQ(ierr); 1553 } else { 1554 ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr); 1555 } 1556 PetscFunctionReturn(0); 1557 } 1558 EXTERN_C_END 1559 1560 #undef __FUNCT__ 1561 #define __FUNCT__ "MatMPIDenseSetPreallocation" 1562 /*@C 1563 MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1564 1565 Not collective 1566 1567 Input Parameters: 1568 . A - the matrix 1569 - data - optional location of matrix data. Set data=PETSC_NULL for PETSc 1570 to control all matrix memory allocation. 1571 1572 Notes: 1573 The dense format is fully compatible with standard Fortran 77 1574 storage by columns. 1575 1576 The data input variable is intended primarily for Fortran programmers 1577 who wish to allocate their own matrix memory space. Most users should 1578 set data=PETSC_NULL. 1579 1580 Level: intermediate 1581 1582 .keywords: matrix,dense, parallel 1583 1584 .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 1585 @*/ 1586 PetscErrorCode PETSCMAT_DLLEXPORT MatMPIDenseSetPreallocation(Mat mat,PetscScalar *data) 1587 { 1588 PetscErrorCode ierr,(*f)(Mat,PetscScalar *); 1589 1590 PetscFunctionBegin; 1591 ierr = PetscObjectQueryFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1592 if (f) { 1593 ierr = (*f)(mat,data);CHKERRQ(ierr); 1594 } 1595 PetscFunctionReturn(0); 1596 } 1597 1598 #undef __FUNCT__ 1599 #define __FUNCT__ "MatCreateMPIDense" 1600 /*@C 1601 MatCreateMPIDense - Creates a sparse parallel matrix in dense format. 1602 1603 Collective on MPI_Comm 1604 1605 Input Parameters: 1606 + comm - MPI communicator 1607 . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1608 . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1609 . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 1610 . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 1611 - data - optional location of matrix data. Set data=PETSC_NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc 1612 to control all matrix memory allocation. 1613 1614 Output Parameter: 1615 . A - the matrix 1616 1617 Notes: 1618 The dense format is fully compatible with standard Fortran 77 1619 storage by columns. 1620 1621 The data input variable is intended primarily for Fortran programmers 1622 who wish to allocate their own matrix memory space. Most users should 1623 set data=PETSC_NULL (PETSC_NULL_SCALAR for Fortran users). 1624 1625 The user MUST specify either the local or global matrix dimensions 1626 (possibly both). 1627 1628 Level: intermediate 1629 1630 .keywords: matrix,dense, parallel 1631 1632 .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 1633 @*/ 1634 PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 1635 { 1636 PetscErrorCode ierr; 1637 PetscMPIInt size; 1638 1639 PetscFunctionBegin; 1640 ierr = MatCreate(comm,A);CHKERRQ(ierr); 1641 ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 1642 ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1643 if (size > 1) { 1644 ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr); 1645 ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr); 1646 } else { 1647 ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 1648 ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 1649 } 1650 PetscFunctionReturn(0); 1651 } 1652 1653 #undef __FUNCT__ 1654 #define __FUNCT__ "MatDuplicate_MPIDense" 1655 static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 1656 { 1657 Mat mat; 1658 Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 1659 PetscErrorCode ierr; 1660 1661 PetscFunctionBegin; 1662 *newmat = 0; 1663 ierr = MatCreate(((PetscObject)A)->comm,&mat);CHKERRQ(ierr); 1664 ierr = MatSetSizes(mat,A->rmap.n,A->cmap.n,A->rmap.N,A->cmap.N);CHKERRQ(ierr); 1665 ierr = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr); 1666 a = (Mat_MPIDense*)mat->data; 1667 ierr = PetscMemcpy(mat->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 1668 mat->factor = A->factor; 1669 mat->assembled = PETSC_TRUE; 1670 mat->preallocated = PETSC_TRUE; 1671 1672 mat->rmap.rstart = A->rmap.rstart; 1673 mat->rmap.rend = A->rmap.rend; 1674 a->size = oldmat->size; 1675 a->rank = oldmat->rank; 1676 mat->insertmode = NOT_SET_VALUES; 1677 a->nvec = oldmat->nvec; 1678 a->donotstash = oldmat->donotstash; 1679 1680 ierr = PetscMemcpy(mat->rmap.range,A->rmap.range,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr); 1681 ierr = PetscMemcpy(mat->cmap.range,A->cmap.range,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr); 1682 ierr = MatStashCreate_Private(((PetscObject)A)->comm,1,&mat->stash);CHKERRQ(ierr); 1683 1684 ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 1685 ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 1686 ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 1687 1688 #if defined(PETSC_HAVE_PLAPACK) 1689 ierr = PetscMemcpy(mat->spptr,A->spptr,sizeof(Mat_Plapack));CHKERRQ(ierr); 1690 #endif 1691 *newmat = mat; 1692 PetscFunctionReturn(0); 1693 } 1694 1695 #include "petscsys.h" 1696 1697 #undef __FUNCT__ 1698 #define __FUNCT__ "MatLoad_MPIDense_DenseInFile" 1699 PetscErrorCode MatLoad_MPIDense_DenseInFile(MPI_Comm comm,PetscInt fd,PetscInt M,PetscInt N, const MatType type,Mat *newmat) 1700 { 1701 PetscErrorCode ierr; 1702 PetscMPIInt rank,size; 1703 PetscInt *rowners,i,m,nz,j; 1704 PetscScalar *array,*vals,*vals_ptr; 1705 MPI_Status status; 1706 1707 PetscFunctionBegin; 1708 ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 1709 ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1710 1711 /* determine ownership of all rows */ 1712 m = M/size + ((M % size) > rank); 1713 ierr = PetscMalloc((size+2)*sizeof(PetscInt),&rowners);CHKERRQ(ierr); 1714 ierr = MPI_Allgather(&m,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr); 1715 rowners[0] = 0; 1716 for (i=2; i<=size; i++) { 1717 rowners[i] += rowners[i-1]; 1718 } 1719 1720 ierr = MatCreate(comm,newmat);CHKERRQ(ierr); 1721 ierr = MatSetSizes(*newmat,m,PETSC_DECIDE,M,N);CHKERRQ(ierr); 1722 ierr = MatSetType(*newmat,type);CHKERRQ(ierr); 1723 ierr = MatMPIDenseSetPreallocation(*newmat,PETSC_NULL);CHKERRQ(ierr); 1724 ierr = MatGetArray(*newmat,&array);CHKERRQ(ierr); 1725 1726 if (!rank) { 1727 ierr = PetscMalloc(m*N*sizeof(PetscScalar),&vals);CHKERRQ(ierr); 1728 1729 /* read in my part of the matrix numerical values */ 1730 ierr = PetscBinaryRead(fd,vals,m*N,PETSC_SCALAR);CHKERRQ(ierr); 1731 1732 /* insert into matrix-by row (this is why cannot directly read into array */ 1733 vals_ptr = vals; 1734 for (i=0; i<m; i++) { 1735 for (j=0; j<N; j++) { 1736 array[i + j*m] = *vals_ptr++; 1737 } 1738 } 1739 1740 /* read in other processors and ship out */ 1741 for (i=1; i<size; i++) { 1742 nz = (rowners[i+1] - rowners[i])*N; 1743 ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 1744 ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)(*newmat))->tag,comm);CHKERRQ(ierr); 1745 } 1746 } else { 1747 /* receive numeric values */ 1748 ierr = PetscMalloc(m*N*sizeof(PetscScalar),&vals);CHKERRQ(ierr); 1749 1750 /* receive message of values*/ 1751 ierr = MPI_Recv(vals,m*N,MPIU_SCALAR,0,((PetscObject)(*newmat))->tag,comm,&status);CHKERRQ(ierr); 1752 1753 /* insert into matrix-by row (this is why cannot directly read into array */ 1754 vals_ptr = vals; 1755 for (i=0; i<m; i++) { 1756 for (j=0; j<N; j++) { 1757 array[i + j*m] = *vals_ptr++; 1758 } 1759 } 1760 } 1761 ierr = PetscFree(rowners);CHKERRQ(ierr); 1762 ierr = PetscFree(vals);CHKERRQ(ierr); 1763 ierr = MatAssemblyBegin(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1764 ierr = MatAssemblyEnd(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1765 PetscFunctionReturn(0); 1766 } 1767 1768 #undef __FUNCT__ 1769 #define __FUNCT__ "MatLoad_MPIDense" 1770 PetscErrorCode MatLoad_MPIDense(PetscViewer viewer,const MatType type,Mat *newmat) 1771 { 1772 Mat A; 1773 PetscScalar *vals,*svals; 1774 MPI_Comm comm = ((PetscObject)viewer)->comm; 1775 MPI_Status status; 1776 PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*rowners,*sndcounts,m,maxnz; 1777 PetscInt header[4],*rowlengths = 0,M,N,*cols; 1778 PetscInt *ourlens,*procsnz = 0,*offlens,jj,*mycols,*smycols; 1779 PetscInt i,nz,j,rstart,rend; 1780 int fd; 1781 PetscErrorCode ierr; 1782 1783 PetscFunctionBegin; 1784 ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1785 ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 1786 if (!rank) { 1787 ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 1788 ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 1789 if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 1790 } 1791 1792 ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 1793 M = header[1]; N = header[2]; nz = header[3]; 1794 1795 /* 1796 Handle case where matrix is stored on disk as a dense matrix 1797 */ 1798 if (nz == MATRIX_BINARY_FORMAT_DENSE) { 1799 ierr = MatLoad_MPIDense_DenseInFile(comm,fd,M,N,type,newmat);CHKERRQ(ierr); 1800 PetscFunctionReturn(0); 1801 } 1802 1803 /* determine ownership of all rows */ 1804 m = PetscMPIIntCast(M/size + ((M % size) > rank)); 1805 ierr = PetscMalloc((size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr); 1806 ierr = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 1807 rowners[0] = 0; 1808 for (i=2; i<=size; i++) { 1809 rowners[i] += rowners[i-1]; 1810 } 1811 rstart = rowners[rank]; 1812 rend = rowners[rank+1]; 1813 1814 /* distribute row lengths to all processors */ 1815 ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&ourlens);CHKERRQ(ierr); 1816 offlens = ourlens + (rend-rstart); 1817 if (!rank) { 1818 ierr = PetscMalloc(M*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 1819 ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 1820 ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 1821 for (i=0; i<size; i++) sndcounts[i] = rowners[i+1] - rowners[i]; 1822 ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr); 1823 ierr = PetscFree(sndcounts);CHKERRQ(ierr); 1824 } else { 1825 ierr = MPI_Scatterv(0,0,0,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr); 1826 } 1827 1828 if (!rank) { 1829 /* calculate the number of nonzeros on each processor */ 1830 ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 1831 ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 1832 for (i=0; i<size; i++) { 1833 for (j=rowners[i]; j< rowners[i+1]; j++) { 1834 procsnz[i] += rowlengths[j]; 1835 } 1836 } 1837 ierr = PetscFree(rowlengths);CHKERRQ(ierr); 1838 1839 /* determine max buffer needed and allocate it */ 1840 maxnz = 0; 1841 for (i=0; i<size; i++) { 1842 maxnz = PetscMax(maxnz,procsnz[i]); 1843 } 1844 ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 1845 1846 /* read in my part of the matrix column indices */ 1847 nz = procsnz[0]; 1848 ierr = PetscMalloc(nz*sizeof(PetscInt),&mycols);CHKERRQ(ierr); 1849 ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 1850 1851 /* read in every one elses and ship off */ 1852 for (i=1; i<size; i++) { 1853 nz = procsnz[i]; 1854 ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 1855 ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 1856 } 1857 ierr = PetscFree(cols);CHKERRQ(ierr); 1858 } else { 1859 /* determine buffer space needed for message */ 1860 nz = 0; 1861 for (i=0; i<m; i++) { 1862 nz += ourlens[i]; 1863 } 1864 ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&mycols);CHKERRQ(ierr); 1865 1866 /* receive message of column indices*/ 1867 ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 1868 ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 1869 if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 1870 } 1871 1872 /* loop over local rows, determining number of off diagonal entries */ 1873 ierr = PetscMemzero(offlens,m*sizeof(PetscInt));CHKERRQ(ierr); 1874 jj = 0; 1875 for (i=0; i<m; i++) { 1876 for (j=0; j<ourlens[i]; j++) { 1877 if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++; 1878 jj++; 1879 } 1880 } 1881 1882 /* create our matrix */ 1883 for (i=0; i<m; i++) { 1884 ourlens[i] -= offlens[i]; 1885 } 1886 ierr = MatCreate(comm,newmat);CHKERRQ(ierr); 1887 ierr = MatSetSizes(*newmat,m,PETSC_DECIDE,M,N);CHKERRQ(ierr); 1888 ierr = MatSetType(*newmat,type);CHKERRQ(ierr); 1889 ierr = MatMPIDenseSetPreallocation(*newmat,PETSC_NULL);CHKERRQ(ierr); 1890 A = *newmat; 1891 for (i=0; i<m; i++) { 1892 ourlens[i] += offlens[i]; 1893 } 1894 1895 if (!rank) { 1896 ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&vals);CHKERRQ(ierr); 1897 1898 /* read in my part of the matrix numerical values */ 1899 nz = procsnz[0]; 1900 ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 1901 1902 /* insert into matrix */ 1903 jj = rstart; 1904 smycols = mycols; 1905 svals = vals; 1906 for (i=0; i<m; i++) { 1907 ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 1908 smycols += ourlens[i]; 1909 svals += ourlens[i]; 1910 jj++; 1911 } 1912 1913 /* read in other processors and ship out */ 1914 for (i=1; i<size; i++) { 1915 nz = procsnz[i]; 1916 ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 1917 ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 1918 } 1919 ierr = PetscFree(procsnz);CHKERRQ(ierr); 1920 } else { 1921 /* receive numeric values */ 1922 ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&vals);CHKERRQ(ierr); 1923 1924 /* receive message of values*/ 1925 ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr); 1926 ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 1927 if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 1928 1929 /* insert into matrix */ 1930 jj = rstart; 1931 smycols = mycols; 1932 svals = vals; 1933 for (i=0; i<m; i++) { 1934 ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 1935 smycols += ourlens[i]; 1936 svals += ourlens[i]; 1937 jj++; 1938 } 1939 } 1940 ierr = PetscFree(ourlens);CHKERRQ(ierr); 1941 ierr = PetscFree(vals);CHKERRQ(ierr); 1942 ierr = PetscFree(mycols);CHKERRQ(ierr); 1943 ierr = PetscFree(rowners);CHKERRQ(ierr); 1944 1945 ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1946 ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1947 PetscFunctionReturn(0); 1948 } 1949 1950 #undef __FUNCT__ 1951 #define __FUNCT__ "MatEqual_MPIDense" 1952 PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscTruth *flag) 1953 { 1954 Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 1955 Mat a,b; 1956 PetscTruth flg; 1957 PetscErrorCode ierr; 1958 1959 PetscFunctionBegin; 1960 a = matA->A; 1961 b = matB->A; 1962 ierr = MatEqual(a,b,&flg);CHKERRQ(ierr); 1963 ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr); 1964 PetscFunctionReturn(0); 1965 } 1966 1967 #if defined(PETSC_HAVE_PLAPACK) 1968 1969 #undef __FUNCT__ 1970 #define __FUNCT__ "PetscPLAPACKFinalizePackage" 1971 /*@C 1972 PetscPLAPACKFinalizePackage - This function destroys everything in the Petsc interface to PLAPACK. 1973 Level: developer 1974 1975 .keywords: Petsc, destroy, package, PLAPACK 1976 .seealso: PetscFinalize() 1977 @*/ 1978 PetscErrorCode PETSC_DLLEXPORT PetscPLAPACKFinalizePackage(void) 1979 { 1980 PetscErrorCode ierr; 1981 1982 PetscFunctionBegin; 1983 ierr = PLA_Finalize();CHKERRQ(ierr); 1984 PetscFunctionReturn(0); 1985 } 1986 1987 #undef __FUNCT__ 1988 #define __FUNCT__ "PetscPLAPACKInitializePackage" 1989 /*@C 1990 PetscPLAPACKInitializePackage - This function initializes everything in the Petsc interface to PLAPACK. It is 1991 called from PetscDLLibraryRegister() when using dynamic libraries, and on the call to PetscInitialize() 1992 when using static libraries. 1993 1994 Input Parameter: 1995 path - The dynamic library path, or PETSC_NULL 1996 1997 Level: developer 1998 1999 .keywords: Petsc, initialize, package, PLAPACK 2000 .seealso: PetscInitializePackage(), PetscInitialize() 2001 @*/ 2002 PetscErrorCode PETSC_DLLEXPORT PetscPLAPACKInitializePackage(const char path[]) 2003 { 2004 MPI_Comm comm = PETSC_COMM_WORLD; 2005 PetscMPIInt size; 2006 PetscErrorCode ierr; 2007 2008 PetscFunctionBegin; 2009 if (!PLA_Initialized(PETSC_NULL)) { 2010 2011 ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2012 Plapack_nprows = 1; 2013 Plapack_npcols = size; 2014 2015 ierr = PetscOptionsBegin(comm,PETSC_NULL,"PLAPACK Options","Mat");CHKERRQ(ierr); 2016 ierr = PetscOptionsInt("-plapack_nprows","row dimension of 2D processor mesh","None",Plapack_nprows,&Plapack_nprows,PETSC_NULL);CHKERRQ(ierr); 2017 ierr = PetscOptionsInt("-plapack_npcols","column dimension of 2D processor mesh","None",Plapack_npcols,&Plapack_npcols,PETSC_NULL);CHKERRQ(ierr); 2018 #if defined(PETSC_USE_DEBUG) 2019 Plapack_ierror = 3; 2020 #else 2021 Plapack_ierror = 0; 2022 #endif 2023 ierr = PetscOptionsInt("-plapack_ckerror","error checking flag","None",Plapack_ierror,&Plapack_ierror,PETSC_NULL);CHKERRQ(ierr); 2024 if (Plapack_ierror){ 2025 ierr = PLA_Set_error_checking(Plapack_ierror,PETSC_TRUE,PETSC_TRUE,PETSC_FALSE );CHKERRQ(ierr); 2026 } else { 2027 ierr = PLA_Set_error_checking(Plapack_ierror,PETSC_FALSE,PETSC_FALSE,PETSC_FALSE );CHKERRQ(ierr); 2028 } 2029 2030 Plapack_nb_alg = 0; 2031 ierr = PetscOptionsInt("-plapack_nb_alg","algorithmic block size","None",Plapack_nb_alg,&Plapack_nb_alg,PETSC_NULL);CHKERRQ(ierr); 2032 if (Plapack_nb_alg) { 2033 ierr = pla_Environ_set_nb_alg (PLA_OP_ALL_ALG,Plapack_nb_alg);CHKERRQ(ierr); 2034 } 2035 PetscOptionsEnd(); 2036 2037 ierr = PLA_Comm_1D_to_2D(comm,Plapack_nprows,Plapack_npcols,&Plapack_comm_2d);CHKERRQ(ierr); 2038 ierr = PLA_Init(Plapack_comm_2d);CHKERRQ(ierr); 2039 ierr = PetscRegisterFinalize(PetscPLAPACKFinalizePackage);CHKERRQ(ierr); 2040 } 2041 PetscFunctionReturn(0); 2042 } 2043 2044 2045 #endif 2046