1be1d678aSKris Buschelman #define PETSCMAT_DLL 2be1d678aSKris Buschelman 367e560aaSBarry Smith /* 467e560aaSBarry Smith Defines the basic matrix operations for sequential dense. 567e560aaSBarry Smith */ 6289bc588SBarry Smith 77c4f633dSBarry Smith #include "../src/mat/impls/dense/seq/dense.h" 8f3da1532SBarry Smith #include "petscblaslapack.h" 9289bc588SBarry Smith 104a2ae208SSatish Balay #undef __FUNCT__ 114a2ae208SSatish Balay #define __FUNCT__ "MatAXPY_SeqDense" 12f4df32b1SMatthew Knepley PetscErrorCode MatAXPY_SeqDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 131987afe7SBarry Smith { 141987afe7SBarry Smith Mat_SeqDense *x = (Mat_SeqDense*)X->data,*y = (Mat_SeqDense*)Y->data; 15f4df32b1SMatthew Knepley PetscScalar oalpha = alpha; 1613f74950SBarry Smith PetscInt j; 170805154bSBarry Smith PetscBLASInt N,m,ldax,lday,one = 1; 18efee365bSSatish Balay PetscErrorCode ierr; 193a40ed3dSBarry Smith 203a40ed3dSBarry Smith PetscFunctionBegin; 21d0f46423SBarry Smith N = PetscBLASIntCast(X->rmap->n*X->cmap->n); 22d0f46423SBarry Smith m = PetscBLASIntCast(X->rmap->n); 230805154bSBarry Smith ldax = PetscBLASIntCast(x->lda); 240805154bSBarry Smith lday = PetscBLASIntCast(y->lda); 25a5ce6ee0Svictorle if (ldax>m || lday>m) { 26d0f46423SBarry Smith for (j=0; j<X->cmap->n; j++) { 27f4df32b1SMatthew Knepley BLASaxpy_(&m,&oalpha,x->v+j*ldax,&one,y->v+j*lday,&one); 28a5ce6ee0Svictorle } 29a5ce6ee0Svictorle } else { 30f4df32b1SMatthew Knepley BLASaxpy_(&N,&oalpha,x->v,&one,y->v,&one); 31a5ce6ee0Svictorle } 320450473dSBarry Smith ierr = PetscLogFlops(PetscMax(2*N-1,0));CHKERRQ(ierr); 333a40ed3dSBarry Smith PetscFunctionReturn(0); 341987afe7SBarry Smith } 351987afe7SBarry Smith 364a2ae208SSatish Balay #undef __FUNCT__ 374a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_SeqDense" 38dfbe8321SBarry Smith PetscErrorCode MatGetInfo_SeqDense(Mat A,MatInfoType flag,MatInfo *info) 39289bc588SBarry Smith { 40d0f46423SBarry Smith PetscInt N = A->rmap->n*A->cmap->n; 413a40ed3dSBarry Smith 423a40ed3dSBarry Smith PetscFunctionBegin; 434e220ebcSLois Curfman McInnes info->block_size = 1.0; 444e220ebcSLois Curfman McInnes info->nz_allocated = (double)N; 456de62eeeSBarry Smith info->nz_used = (double)N; 466de62eeeSBarry Smith info->nz_unneeded = (double)0; 474e220ebcSLois Curfman McInnes info->assemblies = (double)A->num_ass; 484e220ebcSLois Curfman McInnes info->mallocs = 0; 497adad957SLisandro Dalcin info->memory = ((PetscObject)A)->mem; 504e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; 514e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 524e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 533a40ed3dSBarry Smith PetscFunctionReturn(0); 54289bc588SBarry Smith } 55289bc588SBarry Smith 564a2ae208SSatish Balay #undef __FUNCT__ 574a2ae208SSatish Balay #define __FUNCT__ "MatScale_SeqDense" 58f4df32b1SMatthew Knepley PetscErrorCode MatScale_SeqDense(Mat A,PetscScalar alpha) 5980cd9d93SLois Curfman McInnes { 60273d9f13SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 61f4df32b1SMatthew Knepley PetscScalar oalpha = alpha; 62efee365bSSatish Balay PetscErrorCode ierr; 630805154bSBarry Smith PetscBLASInt one = 1,j,nz,lda = PetscBLASIntCast(a->lda); 6480cd9d93SLois Curfman McInnes 653a40ed3dSBarry Smith PetscFunctionBegin; 66d0f46423SBarry Smith if (lda>A->rmap->n) { 67d0f46423SBarry Smith nz = PetscBLASIntCast(A->rmap->n); 68d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 69f4df32b1SMatthew Knepley BLASscal_(&nz,&oalpha,a->v+j*lda,&one); 70a5ce6ee0Svictorle } 71a5ce6ee0Svictorle } else { 72d0f46423SBarry Smith nz = PetscBLASIntCast(A->rmap->n*A->cmap->n); 73f4df32b1SMatthew Knepley BLASscal_(&nz,&oalpha,a->v,&one); 74a5ce6ee0Svictorle } 75efee365bSSatish Balay ierr = PetscLogFlops(nz);CHKERRQ(ierr); 763a40ed3dSBarry Smith PetscFunctionReturn(0); 7780cd9d93SLois Curfman McInnes } 7880cd9d93SLois Curfman McInnes 791cbb95d3SBarry Smith #undef __FUNCT__ 801cbb95d3SBarry Smith #define __FUNCT__ "MatIsHermitian_SeqDense" 811cbb95d3SBarry Smith PetscErrorCode MatIsHermitian_SeqDense(Mat A,PetscReal rtol,PetscTruth *fl) 821cbb95d3SBarry Smith { 831cbb95d3SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 84d0f46423SBarry Smith PetscInt i,j,m = A->rmap->n,N; 851cbb95d3SBarry Smith PetscScalar *v = a->v; 861cbb95d3SBarry Smith 871cbb95d3SBarry Smith PetscFunctionBegin; 881cbb95d3SBarry Smith *fl = PETSC_FALSE; 89d0f46423SBarry Smith if (A->rmap->n != A->cmap->n) PetscFunctionReturn(0); 901cbb95d3SBarry Smith N = a->lda; 911cbb95d3SBarry Smith 921cbb95d3SBarry Smith for (i=0; i<m; i++) { 931cbb95d3SBarry Smith for (j=i+1; j<m; j++) { 941cbb95d3SBarry Smith if (PetscAbsScalar(v[i+j*N] - PetscConj(v[j+i*N])) > rtol) PetscFunctionReturn(0); 951cbb95d3SBarry Smith } 961cbb95d3SBarry Smith } 971cbb95d3SBarry Smith *fl = PETSC_TRUE; 981cbb95d3SBarry Smith PetscFunctionReturn(0); 991cbb95d3SBarry Smith } 1001cbb95d3SBarry Smith 101b24902e0SBarry Smith #undef __FUNCT__ 102b24902e0SBarry Smith #define __FUNCT__ "MatDuplicateNoCreate_SeqDense" 103719d5645SBarry Smith PetscErrorCode MatDuplicateNoCreate_SeqDense(Mat newi,Mat A,MatDuplicateOption cpvalues) 104b24902e0SBarry Smith { 105b24902e0SBarry Smith Mat_SeqDense *mat = (Mat_SeqDense*)A->data,*l; 106b24902e0SBarry Smith PetscErrorCode ierr; 107b24902e0SBarry Smith PetscInt lda = (PetscInt)mat->lda,j,m; 108b24902e0SBarry Smith 109b24902e0SBarry Smith PetscFunctionBegin; 110719d5645SBarry Smith ierr = MatSeqDenseSetPreallocation(newi,PETSC_NULL);CHKERRQ(ierr); 111b24902e0SBarry Smith if (cpvalues == MAT_COPY_VALUES) { 112b24902e0SBarry Smith l = (Mat_SeqDense*)newi->data; 113d0f46423SBarry Smith if (lda>A->rmap->n) { 114d0f46423SBarry Smith m = A->rmap->n; 115d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 116b24902e0SBarry Smith ierr = PetscMemcpy(l->v+j*m,mat->v+j*lda,m*sizeof(PetscScalar));CHKERRQ(ierr); 117b24902e0SBarry Smith } 118b24902e0SBarry Smith } else { 119d0f46423SBarry Smith ierr = PetscMemcpy(l->v,mat->v,A->rmap->n*A->cmap->n*sizeof(PetscScalar));CHKERRQ(ierr); 120b24902e0SBarry Smith } 121b24902e0SBarry Smith } 122b24902e0SBarry Smith newi->assembled = PETSC_TRUE; 123b24902e0SBarry Smith PetscFunctionReturn(0); 124b24902e0SBarry Smith } 125b24902e0SBarry Smith 1264a2ae208SSatish Balay #undef __FUNCT__ 1274a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_SeqDense" 128dfbe8321SBarry Smith PetscErrorCode MatDuplicate_SeqDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 12902cad45dSBarry Smith { 1306849ba73SBarry Smith PetscErrorCode ierr; 13102cad45dSBarry Smith 1323a40ed3dSBarry Smith PetscFunctionBegin; 1335c9eb25fSBarry Smith ierr = MatCreate(((PetscObject)A)->comm,newmat);CHKERRQ(ierr); 134d0f46423SBarry Smith ierr = MatSetSizes(*newmat,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n);CHKERRQ(ierr); 1355c9eb25fSBarry Smith ierr = MatSetType(*newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 136719d5645SBarry Smith ierr = MatDuplicateNoCreate_SeqDense(*newmat,A,cpvalues);CHKERRQ(ierr); 137b24902e0SBarry Smith PetscFunctionReturn(0); 138b24902e0SBarry Smith } 139b24902e0SBarry Smith 1406ee01492SSatish Balay 1410481f469SBarry Smith extern PetscErrorCode MatLUFactor_SeqDense(Mat,IS,IS,const MatFactorInfo*); 142719d5645SBarry Smith 1434a2ae208SSatish Balay #undef __FUNCT__ 1444a2ae208SSatish Balay #define __FUNCT__ "MatLUFactorNumeric_SeqDense" 1450481f469SBarry Smith PetscErrorCode MatLUFactorNumeric_SeqDense(Mat fact,Mat A,const MatFactorInfo *info_dummy) 146289bc588SBarry Smith { 1474482741eSBarry Smith MatFactorInfo info; 148a093e273SMatthew Knepley PetscErrorCode ierr; 1493a40ed3dSBarry Smith 1503a40ed3dSBarry Smith PetscFunctionBegin; 151c3ef05f6SHong Zhang ierr = MatDuplicateNoCreate_SeqDense(fact,A,MAT_COPY_VALUES);CHKERRQ(ierr); 152719d5645SBarry Smith ierr = MatLUFactor_SeqDense(fact,0,0,&info);CHKERRQ(ierr); 1533a40ed3dSBarry Smith PetscFunctionReturn(0); 154289bc588SBarry Smith } 1556ee01492SSatish Balay 1560b4b3355SBarry Smith #undef __FUNCT__ 1574a2ae208SSatish Balay #define __FUNCT__ "MatSolve_SeqDense" 158dfbe8321SBarry Smith PetscErrorCode MatSolve_SeqDense(Mat A,Vec xx,Vec yy) 159289bc588SBarry Smith { 160c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 1616849ba73SBarry Smith PetscErrorCode ierr; 16287828ca2SBarry Smith PetscScalar *x,*y; 163d0f46423SBarry Smith PetscBLASInt one = 1,info,m = PetscBLASIntCast(A->rmap->n); 16467e560aaSBarry Smith 1653a40ed3dSBarry Smith PetscFunctionBegin; 1661ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 1671ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 168d0f46423SBarry Smith ierr = PetscMemcpy(y,x,A->rmap->n*sizeof(PetscScalar));CHKERRQ(ierr); 169d5f3da31SBarry Smith if (A->factortype == MAT_FACTOR_LU) { 170ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_GETRS) 17180444007SBarry Smith SETERRQ(PETSC_ERR_SUP,"GETRS - Lapack routine is unavailable."); 172ae7cfcebSSatish Balay #else 17371044d3cSBarry Smith LAPACKgetrs_("N",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info); 1744ce68768SBarry Smith if (info) SETERRQ(PETSC_ERR_LIB,"GETRS - Bad solve"); 175ae7cfcebSSatish Balay #endif 176d5f3da31SBarry Smith } else if (A->factortype == MAT_FACTOR_CHOLESKY){ 177ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_POTRS) 17880444007SBarry Smith SETERRQ(PETSC_ERR_SUP,"POTRS - Lapack routine is unavailable."); 179ae7cfcebSSatish Balay #else 18071044d3cSBarry Smith LAPACKpotrs_("L",&m,&one,mat->v,&mat->lda,y,&m,&info); 1814ce68768SBarry Smith if (info) SETERRQ(PETSC_ERR_LIB,"POTRS Bad solve"); 182ae7cfcebSSatish Balay #endif 183289bc588SBarry Smith } 18429bbc08cSBarry Smith else SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Matrix must be factored to solve"); 1851ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 1861ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 187dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*A->cmap->n*A->cmap->n - A->cmap->n);CHKERRQ(ierr); 1883a40ed3dSBarry Smith PetscFunctionReturn(0); 189289bc588SBarry Smith } 1906ee01492SSatish Balay 1914a2ae208SSatish Balay #undef __FUNCT__ 1924a2ae208SSatish Balay #define __FUNCT__ "MatSolveTranspose_SeqDense" 193dfbe8321SBarry Smith PetscErrorCode MatSolveTranspose_SeqDense(Mat A,Vec xx,Vec yy) 194da3a660dSBarry Smith { 195c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 196dfbe8321SBarry Smith PetscErrorCode ierr; 19787828ca2SBarry Smith PetscScalar *x,*y; 198d0f46423SBarry Smith PetscBLASInt one = 1,info,m = PetscBLASIntCast(A->rmap->n); 19967e560aaSBarry Smith 2003a40ed3dSBarry Smith PetscFunctionBegin; 2011ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2021ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 203d0f46423SBarry Smith ierr = PetscMemcpy(y,x,A->rmap->n*sizeof(PetscScalar));CHKERRQ(ierr); 204752f5567SLois Curfman McInnes /* assume if pivots exist then use LU; else Cholesky */ 205da3a660dSBarry Smith if (mat->pivots) { 206ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_GETRS) 20780444007SBarry Smith SETERRQ(PETSC_ERR_SUP,"GETRS - Lapack routine is unavailable."); 208ae7cfcebSSatish Balay #else 20971044d3cSBarry Smith LAPACKgetrs_("T",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info); 2104ce68768SBarry Smith if (info) SETERRQ(PETSC_ERR_LIB,"POTRS - Bad solve"); 211ae7cfcebSSatish Balay #endif 2127a97a34bSBarry Smith } else { 213ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_POTRS) 21480444007SBarry Smith SETERRQ(PETSC_ERR_SUP,"POTRS - Lapack routine is unavailable."); 215ae7cfcebSSatish Balay #else 21671044d3cSBarry Smith LAPACKpotrs_("L",&m,&one,mat->v,&mat->lda,y,&m,&info); 2174ce68768SBarry Smith if (info) SETERRQ(PETSC_ERR_LIB,"POTRS - Bad solve"); 218ae7cfcebSSatish Balay #endif 219da3a660dSBarry Smith } 2201ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2211ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 222dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*A->cmap->n*A->cmap->n - A->cmap->n);CHKERRQ(ierr); 2233a40ed3dSBarry Smith PetscFunctionReturn(0); 224da3a660dSBarry Smith } 2256ee01492SSatish Balay 2264a2ae208SSatish Balay #undef __FUNCT__ 2274a2ae208SSatish Balay #define __FUNCT__ "MatSolveAdd_SeqDense" 228dfbe8321SBarry Smith PetscErrorCode MatSolveAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy) 229da3a660dSBarry Smith { 230c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 231dfbe8321SBarry Smith PetscErrorCode ierr; 23287828ca2SBarry Smith PetscScalar *x,*y,sone = 1.0; 233da3a660dSBarry Smith Vec tmp = 0; 234d0f46423SBarry Smith PetscBLASInt one = 1,info,m = PetscBLASIntCast(A->rmap->n); 23567e560aaSBarry Smith 2363a40ed3dSBarry Smith PetscFunctionBegin; 2371ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2381ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 239d0f46423SBarry Smith if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 240da3a660dSBarry Smith if (yy == zz) { 24178b31e54SBarry Smith ierr = VecDuplicate(yy,&tmp);CHKERRQ(ierr); 24252e6d16bSBarry Smith ierr = PetscLogObjectParent(A,tmp);CHKERRQ(ierr); 24378b31e54SBarry Smith ierr = VecCopy(yy,tmp);CHKERRQ(ierr); 244da3a660dSBarry Smith } 245d0f46423SBarry Smith ierr = PetscMemcpy(y,x,A->rmap->n*sizeof(PetscScalar));CHKERRQ(ierr); 246752f5567SLois Curfman McInnes /* assume if pivots exist then use LU; else Cholesky */ 247da3a660dSBarry Smith if (mat->pivots) { 248ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_GETRS) 24980444007SBarry Smith SETERRQ(PETSC_ERR_SUP,"GETRS - Lapack routine is unavailable."); 250ae7cfcebSSatish Balay #else 25171044d3cSBarry Smith LAPACKgetrs_("N",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info); 2522ffef20aSBarry Smith if (info) SETERRQ(PETSC_ERR_LIB,"Bad solve"); 253ae7cfcebSSatish Balay #endif 254a8c6a408SBarry Smith } else { 255ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_POTRS) 25680444007SBarry Smith SETERRQ(PETSC_ERR_SUP,"POTRS - Lapack routine is unavailable."); 257ae7cfcebSSatish Balay #else 25871044d3cSBarry Smith LAPACKpotrs_("L",&m,&one,mat->v,&mat->lda,y,&m,&info); 2592ffef20aSBarry Smith if (info) SETERRQ(PETSC_ERR_LIB,"Bad solve"); 260ae7cfcebSSatish Balay #endif 261da3a660dSBarry Smith } 2622dcb1b2aSMatthew Knepley if (tmp) {ierr = VecAXPY(yy,sone,tmp);CHKERRQ(ierr); ierr = VecDestroy(tmp);CHKERRQ(ierr);} 2632dcb1b2aSMatthew Knepley else {ierr = VecAXPY(yy,sone,zz);CHKERRQ(ierr);} 2641ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2651ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 266dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*A->cmap->n*A->cmap->n);CHKERRQ(ierr); 2673a40ed3dSBarry Smith PetscFunctionReturn(0); 268da3a660dSBarry Smith } 26967e560aaSBarry Smith 2704a2ae208SSatish Balay #undef __FUNCT__ 2714a2ae208SSatish Balay #define __FUNCT__ "MatSolveTransposeAdd_SeqDense" 272dfbe8321SBarry Smith PetscErrorCode MatSolveTransposeAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy) 273da3a660dSBarry Smith { 274c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 2756849ba73SBarry Smith PetscErrorCode ierr; 27687828ca2SBarry Smith PetscScalar *x,*y,sone = 1.0; 277da3a660dSBarry Smith Vec tmp; 278d0f46423SBarry Smith PetscBLASInt one = 1,info,m = PetscBLASIntCast(A->rmap->n); 27967e560aaSBarry Smith 2803a40ed3dSBarry Smith PetscFunctionBegin; 281d0f46423SBarry Smith if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 2821ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2831ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 284da3a660dSBarry Smith if (yy == zz) { 28578b31e54SBarry Smith ierr = VecDuplicate(yy,&tmp);CHKERRQ(ierr); 28652e6d16bSBarry Smith ierr = PetscLogObjectParent(A,tmp);CHKERRQ(ierr); 28778b31e54SBarry Smith ierr = VecCopy(yy,tmp);CHKERRQ(ierr); 288da3a660dSBarry Smith } 289d0f46423SBarry Smith ierr = PetscMemcpy(y,x,A->rmap->n*sizeof(PetscScalar));CHKERRQ(ierr); 290752f5567SLois Curfman McInnes /* assume if pivots exist then use LU; else Cholesky */ 291da3a660dSBarry Smith if (mat->pivots) { 292ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_GETRS) 29380444007SBarry Smith SETERRQ(PETSC_ERR_SUP,"GETRS - Lapack routine is unavailable."); 294ae7cfcebSSatish Balay #else 29571044d3cSBarry Smith LAPACKgetrs_("T",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info); 2962ffef20aSBarry Smith if (info) SETERRQ(PETSC_ERR_LIB,"Bad solve"); 297ae7cfcebSSatish Balay #endif 2983a40ed3dSBarry Smith } else { 299ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_POTRS) 30080444007SBarry Smith SETERRQ(PETSC_ERR_SUP,"POTRS - Lapack routine is unavailable."); 301ae7cfcebSSatish Balay #else 30271044d3cSBarry Smith LAPACKpotrs_("L",&m,&one,mat->v,&mat->lda,y,&m,&info); 3032ffef20aSBarry Smith if (info) SETERRQ(PETSC_ERR_LIB,"Bad solve"); 304ae7cfcebSSatish Balay #endif 305da3a660dSBarry Smith } 30690f02eecSBarry Smith if (tmp) { 3072dcb1b2aSMatthew Knepley ierr = VecAXPY(yy,sone,tmp);CHKERRQ(ierr); 30890f02eecSBarry Smith ierr = VecDestroy(tmp);CHKERRQ(ierr); 3093a40ed3dSBarry Smith } else { 3102dcb1b2aSMatthew Knepley ierr = VecAXPY(yy,sone,zz);CHKERRQ(ierr); 31190f02eecSBarry Smith } 3121ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 3131ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 314dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*A->cmap->n*A->cmap->n);CHKERRQ(ierr); 3153a40ed3dSBarry Smith PetscFunctionReturn(0); 316da3a660dSBarry Smith } 317db4efbfdSBarry Smith 318db4efbfdSBarry Smith /* ---------------------------------------------------------------*/ 319db4efbfdSBarry Smith /* COMMENT: I have chosen to hide row permutation in the pivots, 320db4efbfdSBarry Smith rather than put it in the Mat->row slot.*/ 321db4efbfdSBarry Smith #undef __FUNCT__ 322db4efbfdSBarry Smith #define __FUNCT__ "MatLUFactor_SeqDense" 3230481f469SBarry Smith PetscErrorCode MatLUFactor_SeqDense(Mat A,IS row,IS col,const MatFactorInfo *minfo) 324db4efbfdSBarry Smith { 325db4efbfdSBarry Smith #if defined(PETSC_MISSING_LAPACK_GETRF) 326db4efbfdSBarry Smith PetscFunctionBegin; 327db4efbfdSBarry Smith SETERRQ(PETSC_ERR_SUP,"GETRF - Lapack routine is unavailable."); 328db4efbfdSBarry Smith #else 329db4efbfdSBarry Smith Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 330db4efbfdSBarry Smith PetscErrorCode ierr; 331db4efbfdSBarry Smith PetscBLASInt n,m,info; 332db4efbfdSBarry Smith 333db4efbfdSBarry Smith PetscFunctionBegin; 334db4efbfdSBarry Smith n = PetscBLASIntCast(A->cmap->n); 335db4efbfdSBarry Smith m = PetscBLASIntCast(A->rmap->n); 336db4efbfdSBarry Smith if (!mat->pivots) { 337db4efbfdSBarry Smith ierr = PetscMalloc((A->rmap->n+1)*sizeof(PetscBLASInt),&mat->pivots);CHKERRQ(ierr); 338db4efbfdSBarry Smith ierr = PetscLogObjectMemory(A,A->rmap->n*sizeof(PetscBLASInt));CHKERRQ(ierr); 339db4efbfdSBarry Smith } 340db4efbfdSBarry Smith if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 341db4efbfdSBarry Smith LAPACKgetrf_(&m,&n,mat->v,&mat->lda,mat->pivots,&info); 342db4efbfdSBarry Smith if (info<0) SETERRQ(PETSC_ERR_LIB,"Bad argument to LU factorization"); 343db4efbfdSBarry Smith if (info>0) SETERRQ(PETSC_ERR_MAT_LU_ZRPVT,"Bad LU factorization"); 344db4efbfdSBarry Smith A->ops->solve = MatSolve_SeqDense; 345db4efbfdSBarry Smith A->ops->solvetranspose = MatSolveTranspose_SeqDense; 346db4efbfdSBarry Smith A->ops->solveadd = MatSolveAdd_SeqDense; 347db4efbfdSBarry Smith A->ops->solvetransposeadd = MatSolveTransposeAdd_SeqDense; 348d5f3da31SBarry Smith A->factortype = MAT_FACTOR_LU; 349db4efbfdSBarry Smith 350dc0b31edSSatish Balay ierr = PetscLogFlops((2.0*A->cmap->n*A->cmap->n*A->cmap->n)/3);CHKERRQ(ierr); 351db4efbfdSBarry Smith #endif 352db4efbfdSBarry Smith PetscFunctionReturn(0); 353db4efbfdSBarry Smith } 354db4efbfdSBarry Smith 355db4efbfdSBarry Smith #undef __FUNCT__ 356db4efbfdSBarry Smith #define __FUNCT__ "MatCholeskyFactor_SeqDense" 3570481f469SBarry Smith PetscErrorCode MatCholeskyFactor_SeqDense(Mat A,IS perm,const MatFactorInfo *factinfo) 358db4efbfdSBarry Smith { 359db4efbfdSBarry Smith #if defined(PETSC_MISSING_LAPACK_POTRF) 360db4efbfdSBarry Smith PetscFunctionBegin; 361db4efbfdSBarry Smith SETERRQ(PETSC_ERR_SUP,"POTRF - Lapack routine is unavailable."); 362db4efbfdSBarry Smith #else 363db4efbfdSBarry Smith Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 364db4efbfdSBarry Smith PetscErrorCode ierr; 365db4efbfdSBarry Smith PetscBLASInt info,n = PetscBLASIntCast(A->cmap->n); 366db4efbfdSBarry Smith 367db4efbfdSBarry Smith PetscFunctionBegin; 368db4efbfdSBarry Smith ierr = PetscFree(mat->pivots);CHKERRQ(ierr); 369db4efbfdSBarry Smith mat->pivots = 0; 370db4efbfdSBarry Smith 371db4efbfdSBarry Smith if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 372db4efbfdSBarry Smith LAPACKpotrf_("L",&n,mat->v,&mat->lda,&info); 373db4efbfdSBarry Smith if (info) SETERRQ1(PETSC_ERR_MAT_CH_ZRPVT,"Bad factorization: zero pivot in row %D",(PetscInt)info-1); 374db4efbfdSBarry Smith A->ops->solve = MatSolve_SeqDense; 375db4efbfdSBarry Smith A->ops->solvetranspose = MatSolveTranspose_SeqDense; 376db4efbfdSBarry Smith A->ops->solveadd = MatSolveAdd_SeqDense; 377db4efbfdSBarry Smith A->ops->solvetransposeadd = MatSolveTransposeAdd_SeqDense; 378d5f3da31SBarry Smith A->factortype = MAT_FACTOR_CHOLESKY; 379dc0b31edSSatish Balay ierr = PetscLogFlops((A->cmap->n*A->cmap->n*A->cmap->n)/3.0);CHKERRQ(ierr); 380db4efbfdSBarry Smith #endif 381db4efbfdSBarry Smith PetscFunctionReturn(0); 382db4efbfdSBarry Smith } 383db4efbfdSBarry Smith 384db4efbfdSBarry Smith 385db4efbfdSBarry Smith #undef __FUNCT__ 386db4efbfdSBarry Smith #define __FUNCT__ "MatCholeskyFactorNumeric_SeqDense" 3870481f469SBarry Smith PetscErrorCode MatCholeskyFactorNumeric_SeqDense(Mat fact,Mat A,const MatFactorInfo *info_dummy) 388db4efbfdSBarry Smith { 389db4efbfdSBarry Smith PetscErrorCode ierr; 390db4efbfdSBarry Smith MatFactorInfo info; 391db4efbfdSBarry Smith 392db4efbfdSBarry Smith PetscFunctionBegin; 393db4efbfdSBarry Smith info.fill = 1.0; 394c3ef05f6SHong Zhang ierr = MatDuplicateNoCreate_SeqDense(fact,A,MAT_COPY_VALUES);CHKERRQ(ierr); 395719d5645SBarry Smith ierr = MatCholeskyFactor_SeqDense(fact,0,&info);CHKERRQ(ierr); 396db4efbfdSBarry Smith PetscFunctionReturn(0); 397db4efbfdSBarry Smith } 398db4efbfdSBarry Smith 399db4efbfdSBarry Smith #undef __FUNCT__ 400db4efbfdSBarry Smith #define __FUNCT__ "MatCholeskyFactorSymbolic_SeqDense" 4010481f469SBarry Smith PetscErrorCode MatCholeskyFactorSymbolic_SeqDense(Mat fact,Mat A,IS row,const MatFactorInfo *info) 402db4efbfdSBarry Smith { 403db4efbfdSBarry Smith PetscFunctionBegin; 404c3ef05f6SHong Zhang fact->assembled = PETSC_TRUE; 405719d5645SBarry Smith fact->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqDense; 406db4efbfdSBarry Smith PetscFunctionReturn(0); 407db4efbfdSBarry Smith } 408db4efbfdSBarry Smith 409db4efbfdSBarry Smith #undef __FUNCT__ 410db4efbfdSBarry Smith #define __FUNCT__ "MatLUFactorSymbolic_SeqDense" 4110481f469SBarry Smith PetscErrorCode MatLUFactorSymbolic_SeqDense(Mat fact,Mat A,IS row,IS col,const MatFactorInfo *info) 412db4efbfdSBarry Smith { 413db4efbfdSBarry Smith PetscFunctionBegin; 414c3ef05f6SHong Zhang fact->assembled = PETSC_TRUE; 415719d5645SBarry Smith fact->ops->lufactornumeric = MatLUFactorNumeric_SeqDense; 416db4efbfdSBarry Smith PetscFunctionReturn(0); 417db4efbfdSBarry Smith } 418db4efbfdSBarry Smith 419bb5747d9SMatthew Knepley EXTERN_C_BEGIN 420db4efbfdSBarry Smith #undef __FUNCT__ 421db4efbfdSBarry Smith #define __FUNCT__ "MatGetFactor_seqdense_petsc" 422db4efbfdSBarry Smith PetscErrorCode MatGetFactor_seqdense_petsc(Mat A,MatFactorType ftype,Mat *fact) 423db4efbfdSBarry Smith { 424db4efbfdSBarry Smith PetscErrorCode ierr; 425db4efbfdSBarry Smith 426db4efbfdSBarry Smith PetscFunctionBegin; 427db4efbfdSBarry Smith ierr = MatCreate(((PetscObject)A)->comm,fact);CHKERRQ(ierr); 428db4efbfdSBarry Smith ierr = MatSetSizes(*fact,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n);CHKERRQ(ierr); 429db4efbfdSBarry Smith ierr = MatSetType(*fact,((PetscObject)A)->type_name);CHKERRQ(ierr); 430db4efbfdSBarry Smith if (ftype == MAT_FACTOR_LU){ 431db4efbfdSBarry Smith (*fact)->ops->lufactorsymbolic = MatLUFactorSymbolic_SeqDense; 432db4efbfdSBarry Smith } else { 433db4efbfdSBarry Smith (*fact)->ops->choleskyfactorsymbolic = MatCholeskyFactorSymbolic_SeqDense; 434db4efbfdSBarry Smith } 435d5f3da31SBarry Smith (*fact)->factortype = ftype; 436db4efbfdSBarry Smith PetscFunctionReturn(0); 437db4efbfdSBarry Smith } 438bb5747d9SMatthew Knepley EXTERN_C_END 439db4efbfdSBarry Smith 440289bc588SBarry Smith /* ------------------------------------------------------------------*/ 4414a2ae208SSatish Balay #undef __FUNCT__ 44241f059aeSBarry Smith #define __FUNCT__ "MatSOR_SeqDense" 44341f059aeSBarry Smith PetscErrorCode MatSOR_SeqDense(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal shift,PetscInt its,PetscInt lits,Vec xx) 444289bc588SBarry Smith { 445c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 44687828ca2SBarry Smith PetscScalar *x,*b,*v = mat->v,zero = 0.0,xt; 447dfbe8321SBarry Smith PetscErrorCode ierr; 448d0f46423SBarry Smith PetscInt m = A->rmap->n,i; 449aa482453SBarry Smith #if !defined(PETSC_USE_COMPLEX) 4500805154bSBarry Smith PetscBLASInt o = 1,bm = PetscBLASIntCast(m); 451bc1b551cSSatish Balay #endif 452289bc588SBarry Smith 4533a40ed3dSBarry Smith PetscFunctionBegin; 454289bc588SBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 45571044d3cSBarry Smith /* this is a hack fix, should have another version without the second BLASdot */ 4562dcb1b2aSMatthew Knepley ierr = VecSet(xx,zero);CHKERRQ(ierr); 457289bc588SBarry Smith } 4581ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 4591ebc52fbSHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 460b965ef7fSBarry Smith its = its*lits; 46177431f27SBarry Smith if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 462289bc588SBarry Smith while (its--) { 463fccaa45eSBarry Smith if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 464289bc588SBarry Smith for (i=0; i<m; i++) { 465aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 466f1747703SBarry Smith /* cannot use BLAS dot for complex because compiler/linker is 467f1747703SBarry Smith not happy about returning a double complex */ 46813f74950SBarry Smith PetscInt _i; 46987828ca2SBarry Smith PetscScalar sum = b[i]; 470f1747703SBarry Smith for (_i=0; _i<m; _i++) { 4713f6de6efSSatish Balay sum -= PetscConj(v[i+_i*m])*x[_i]; 472f1747703SBarry Smith } 473f1747703SBarry Smith xt = sum; 474f1747703SBarry Smith #else 47571044d3cSBarry Smith xt = b[i] - BLASdot_(&bm,v+i,&bm,x,&o); 476f1747703SBarry Smith #endif 47755a1b374SBarry Smith x[i] = (1. - omega)*x[i] + omega*(xt+v[i + i*m]*x[i])/(v[i + i*m]+shift); 478289bc588SBarry Smith } 479289bc588SBarry Smith } 480fccaa45eSBarry Smith if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 481289bc588SBarry Smith for (i=m-1; i>=0; i--) { 482aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 483f1747703SBarry Smith /* cannot use BLAS dot for complex because compiler/linker is 484f1747703SBarry Smith not happy about returning a double complex */ 48513f74950SBarry Smith PetscInt _i; 48687828ca2SBarry Smith PetscScalar sum = b[i]; 487f1747703SBarry Smith for (_i=0; _i<m; _i++) { 4883f6de6efSSatish Balay sum -= PetscConj(v[i+_i*m])*x[_i]; 489f1747703SBarry Smith } 490f1747703SBarry Smith xt = sum; 491f1747703SBarry Smith #else 49271044d3cSBarry Smith xt = b[i] - BLASdot_(&bm,v+i,&bm,x,&o); 493f1747703SBarry Smith #endif 49455a1b374SBarry Smith x[i] = (1. - omega)*x[i] + omega*(xt+v[i + i*m]*x[i])/(v[i + i*m]+shift); 495289bc588SBarry Smith } 496289bc588SBarry Smith } 497289bc588SBarry Smith } 4981ebc52fbSHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 4991ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 5003a40ed3dSBarry Smith PetscFunctionReturn(0); 501289bc588SBarry Smith } 502289bc588SBarry Smith 503289bc588SBarry Smith /* -----------------------------------------------------------------*/ 5044a2ae208SSatish Balay #undef __FUNCT__ 5054a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_SeqDense" 506dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_SeqDense(Mat A,Vec xx,Vec yy) 507289bc588SBarry Smith { 508c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 50987828ca2SBarry Smith PetscScalar *v = mat->v,*x,*y; 510dfbe8321SBarry Smith PetscErrorCode ierr; 5110805154bSBarry Smith PetscBLASInt m, n,_One=1; 512ea709b57SSatish Balay PetscScalar _DOne=1.0,_DZero=0.0; 5133a40ed3dSBarry Smith 5143a40ed3dSBarry Smith PetscFunctionBegin; 515d0f46423SBarry Smith m = PetscBLASIntCast(A->rmap->n); 516d0f46423SBarry Smith n = PetscBLASIntCast(A->cmap->n); 517d0f46423SBarry Smith if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 5181ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 5191ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 52071044d3cSBarry Smith BLASgemv_("T",&m,&n,&_DOne,v,&mat->lda,x,&_One,&_DZero,y,&_One); 5211ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 5221ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 523dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n - A->cmap->n);CHKERRQ(ierr); 5243a40ed3dSBarry Smith PetscFunctionReturn(0); 525289bc588SBarry Smith } 526800995b7SMatthew Knepley 5274a2ae208SSatish Balay #undef __FUNCT__ 5284a2ae208SSatish Balay #define __FUNCT__ "MatMult_SeqDense" 529dfbe8321SBarry Smith PetscErrorCode MatMult_SeqDense(Mat A,Vec xx,Vec yy) 530289bc588SBarry Smith { 531c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 53287828ca2SBarry Smith PetscScalar *v = mat->v,*x,*y,_DOne=1.0,_DZero=0.0; 533dfbe8321SBarry Smith PetscErrorCode ierr; 5340805154bSBarry Smith PetscBLASInt m, n, _One=1; 5353a40ed3dSBarry Smith 5363a40ed3dSBarry Smith PetscFunctionBegin; 537d0f46423SBarry Smith m = PetscBLASIntCast(A->rmap->n); 538d0f46423SBarry Smith n = PetscBLASIntCast(A->cmap->n); 539d0f46423SBarry Smith if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 5401ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 5411ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 54271044d3cSBarry Smith BLASgemv_("N",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DZero,y,&_One); 5431ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 5441ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 545dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n - A->rmap->n);CHKERRQ(ierr); 5463a40ed3dSBarry Smith PetscFunctionReturn(0); 547289bc588SBarry Smith } 5486ee01492SSatish Balay 5494a2ae208SSatish Balay #undef __FUNCT__ 5504a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_SeqDense" 551dfbe8321SBarry Smith PetscErrorCode MatMultAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy) 552289bc588SBarry Smith { 553c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 55487828ca2SBarry Smith PetscScalar *v = mat->v,*x,*y,_DOne=1.0; 555dfbe8321SBarry Smith PetscErrorCode ierr; 5560805154bSBarry Smith PetscBLASInt m, n, _One=1; 5573a40ed3dSBarry Smith 5583a40ed3dSBarry Smith PetscFunctionBegin; 559d0f46423SBarry Smith m = PetscBLASIntCast(A->rmap->n); 560d0f46423SBarry Smith n = PetscBLASIntCast(A->cmap->n); 561d0f46423SBarry Smith if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 562600d6d0bSBarry Smith if (zz != yy) {ierr = VecCopy(zz,yy);CHKERRQ(ierr);} 5631ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 5641ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 56571044d3cSBarry Smith BLASgemv_("N",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DOne,y,&_One); 5661ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 5671ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 568dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n);CHKERRQ(ierr); 5693a40ed3dSBarry Smith PetscFunctionReturn(0); 570289bc588SBarry Smith } 5716ee01492SSatish Balay 5724a2ae208SSatish Balay #undef __FUNCT__ 5734a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_SeqDense" 574dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy) 575289bc588SBarry Smith { 576c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 57787828ca2SBarry Smith PetscScalar *v = mat->v,*x,*y; 578dfbe8321SBarry Smith PetscErrorCode ierr; 5790805154bSBarry Smith PetscBLASInt m, n, _One=1; 58087828ca2SBarry Smith PetscScalar _DOne=1.0; 5813a40ed3dSBarry Smith 5823a40ed3dSBarry Smith PetscFunctionBegin; 583d0f46423SBarry Smith m = PetscBLASIntCast(A->rmap->n); 584d0f46423SBarry Smith n = PetscBLASIntCast(A->cmap->n); 585d0f46423SBarry Smith if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 586600d6d0bSBarry Smith if (zz != yy) {ierr = VecCopy(zz,yy);CHKERRQ(ierr);} 5871ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 5881ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 58971044d3cSBarry Smith BLASgemv_("T",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DOne,y,&_One); 5901ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 5911ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 592dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n);CHKERRQ(ierr); 5933a40ed3dSBarry Smith PetscFunctionReturn(0); 594289bc588SBarry Smith } 595289bc588SBarry Smith 596289bc588SBarry Smith /* -----------------------------------------------------------------*/ 5974a2ae208SSatish Balay #undef __FUNCT__ 5984a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_SeqDense" 59913f74950SBarry Smith PetscErrorCode MatGetRow_SeqDense(Mat A,PetscInt row,PetscInt *ncols,PetscInt **cols,PetscScalar **vals) 600289bc588SBarry Smith { 601c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 60287828ca2SBarry Smith PetscScalar *v; 6036849ba73SBarry Smith PetscErrorCode ierr; 60413f74950SBarry Smith PetscInt i; 60567e560aaSBarry Smith 6063a40ed3dSBarry Smith PetscFunctionBegin; 607d0f46423SBarry Smith *ncols = A->cmap->n; 608289bc588SBarry Smith if (cols) { 609d0f46423SBarry Smith ierr = PetscMalloc((A->cmap->n+1)*sizeof(PetscInt),cols);CHKERRQ(ierr); 610d0f46423SBarry Smith for (i=0; i<A->cmap->n; i++) (*cols)[i] = i; 611289bc588SBarry Smith } 612289bc588SBarry Smith if (vals) { 613d0f46423SBarry Smith ierr = PetscMalloc((A->cmap->n+1)*sizeof(PetscScalar),vals);CHKERRQ(ierr); 614289bc588SBarry Smith v = mat->v + row; 615d0f46423SBarry Smith for (i=0; i<A->cmap->n; i++) {(*vals)[i] = *v; v += mat->lda;} 616289bc588SBarry Smith } 6173a40ed3dSBarry Smith PetscFunctionReturn(0); 618289bc588SBarry Smith } 6196ee01492SSatish Balay 6204a2ae208SSatish Balay #undef __FUNCT__ 6214a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_SeqDense" 62213f74950SBarry Smith PetscErrorCode MatRestoreRow_SeqDense(Mat A,PetscInt row,PetscInt *ncols,PetscInt **cols,PetscScalar **vals) 623289bc588SBarry Smith { 624dfbe8321SBarry Smith PetscErrorCode ierr; 625606d414cSSatish Balay PetscFunctionBegin; 626606d414cSSatish Balay if (cols) {ierr = PetscFree(*cols);CHKERRQ(ierr);} 627606d414cSSatish Balay if (vals) {ierr = PetscFree(*vals);CHKERRQ(ierr); } 6283a40ed3dSBarry Smith PetscFunctionReturn(0); 629289bc588SBarry Smith } 630289bc588SBarry Smith /* ----------------------------------------------------------------*/ 6314a2ae208SSatish Balay #undef __FUNCT__ 6324a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_SeqDense" 63313f74950SBarry Smith PetscErrorCode MatSetValues_SeqDense(Mat A,PetscInt m,const PetscInt indexm[],PetscInt n,const PetscInt indexn[],const PetscScalar v[],InsertMode addv) 634289bc588SBarry Smith { 635c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 63613f74950SBarry Smith PetscInt i,j,idx=0; 637d6dfbf8fSBarry Smith 6383a40ed3dSBarry Smith PetscFunctionBegin; 63971fd2e92SBarry Smith if (v) PetscValidScalarPointer(v,6); 640289bc588SBarry Smith if (!mat->roworiented) { 641dbb450caSBarry Smith if (addv == INSERT_VALUES) { 642289bc588SBarry Smith for (j=0; j<n; j++) { 643cddbea37SSatish Balay if (indexn[j] < 0) {idx += m; continue;} 6442515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 645d0f46423SBarry Smith if (indexn[j] >= A->cmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1); 64658804f6dSBarry Smith #endif 647289bc588SBarry Smith for (i=0; i<m; i++) { 648cddbea37SSatish Balay if (indexm[i] < 0) {idx++; continue;} 6492515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 650d0f46423SBarry Smith if (indexm[i] >= A->rmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1); 65158804f6dSBarry Smith #endif 652cddbea37SSatish Balay mat->v[indexn[j]*mat->lda + indexm[i]] = v[idx++]; 653289bc588SBarry Smith } 654289bc588SBarry Smith } 6553a40ed3dSBarry Smith } else { 656289bc588SBarry Smith for (j=0; j<n; j++) { 657cddbea37SSatish Balay if (indexn[j] < 0) {idx += m; continue;} 6582515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 659d0f46423SBarry Smith if (indexn[j] >= A->cmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1); 66058804f6dSBarry Smith #endif 661289bc588SBarry Smith for (i=0; i<m; i++) { 662cddbea37SSatish Balay if (indexm[i] < 0) {idx++; continue;} 6632515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 664d0f46423SBarry Smith if (indexm[i] >= A->rmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1); 66558804f6dSBarry Smith #endif 666cddbea37SSatish Balay mat->v[indexn[j]*mat->lda + indexm[i]] += v[idx++]; 667289bc588SBarry Smith } 668289bc588SBarry Smith } 669289bc588SBarry Smith } 6703a40ed3dSBarry Smith } else { 671dbb450caSBarry Smith if (addv == INSERT_VALUES) { 672e8d4e0b9SBarry Smith for (i=0; i<m; i++) { 673cddbea37SSatish Balay if (indexm[i] < 0) { idx += n; continue;} 6742515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 675d0f46423SBarry Smith if (indexm[i] >= A->rmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1); 67658804f6dSBarry Smith #endif 677e8d4e0b9SBarry Smith for (j=0; j<n; j++) { 678cddbea37SSatish Balay if (indexn[j] < 0) { idx++; continue;} 6792515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 680d0f46423SBarry Smith if (indexn[j] >= A->cmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1); 68158804f6dSBarry Smith #endif 682cddbea37SSatish Balay mat->v[indexn[j]*mat->lda + indexm[i]] = v[idx++]; 683e8d4e0b9SBarry Smith } 684e8d4e0b9SBarry Smith } 6853a40ed3dSBarry Smith } else { 686289bc588SBarry Smith for (i=0; i<m; i++) { 687cddbea37SSatish Balay if (indexm[i] < 0) { idx += n; continue;} 6882515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 689d0f46423SBarry Smith if (indexm[i] >= A->rmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1); 69058804f6dSBarry Smith #endif 691289bc588SBarry Smith for (j=0; j<n; j++) { 692cddbea37SSatish Balay if (indexn[j] < 0) { idx++; continue;} 6932515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 694d0f46423SBarry Smith if (indexn[j] >= A->cmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1); 69558804f6dSBarry Smith #endif 696cddbea37SSatish Balay mat->v[indexn[j]*mat->lda + indexm[i]] += v[idx++]; 697289bc588SBarry Smith } 698289bc588SBarry Smith } 699289bc588SBarry Smith } 700e8d4e0b9SBarry Smith } 7013a40ed3dSBarry Smith PetscFunctionReturn(0); 702289bc588SBarry Smith } 703e8d4e0b9SBarry Smith 7044a2ae208SSatish Balay #undef __FUNCT__ 7054a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_SeqDense" 70613f74950SBarry Smith PetscErrorCode MatGetValues_SeqDense(Mat A,PetscInt m,const PetscInt indexm[],PetscInt n,const PetscInt indexn[],PetscScalar v[]) 707ae80bb75SLois Curfman McInnes { 708ae80bb75SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 70913f74950SBarry Smith PetscInt i,j; 710ae80bb75SLois Curfman McInnes 7113a40ed3dSBarry Smith PetscFunctionBegin; 712ae80bb75SLois Curfman McInnes /* row-oriented output */ 713ae80bb75SLois Curfman McInnes for (i=0; i<m; i++) { 71497e567efSBarry Smith if (indexm[i] < 0) {v += n;continue;} 715d0f46423SBarry Smith if (indexm[i] >= A->rmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row %D requested larger than number rows %D",indexm[i],A->rmap->n); 716ae80bb75SLois Curfman McInnes for (j=0; j<n; j++) { 7176f31f424SBarry Smith if (indexn[j] < 0) {v++; continue;} 718d0f46423SBarry Smith if (indexn[j] >= A->cmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column %D requested larger than number columns %D",indexn[j],A->cmap->n); 71997e567efSBarry Smith *v++ = mat->v[indexn[j]*mat->lda + indexm[i]]; 720ae80bb75SLois Curfman McInnes } 721ae80bb75SLois Curfman McInnes } 7223a40ed3dSBarry Smith PetscFunctionReturn(0); 723ae80bb75SLois Curfman McInnes } 724ae80bb75SLois Curfman McInnes 725289bc588SBarry Smith /* -----------------------------------------------------------------*/ 726289bc588SBarry Smith 7274a2ae208SSatish Balay #undef __FUNCT__ 7284a2ae208SSatish Balay #define __FUNCT__ "MatLoad_SeqDense" 729a313700dSBarry Smith PetscErrorCode MatLoad_SeqDense(PetscViewer viewer, const MatType type,Mat *A) 73088e32edaSLois Curfman McInnes { 73188e32edaSLois Curfman McInnes Mat_SeqDense *a; 73288e32edaSLois Curfman McInnes Mat B; 7336849ba73SBarry Smith PetscErrorCode ierr; 73413f74950SBarry Smith PetscInt *scols,i,j,nz,header[4]; 73513f74950SBarry Smith int fd; 73613f74950SBarry Smith PetscMPIInt size; 73713f74950SBarry Smith PetscInt *rowlengths = 0,M,N,*cols; 73887828ca2SBarry Smith PetscScalar *vals,*svals,*v,*w; 73919bcc07fSBarry Smith MPI_Comm comm = ((PetscObject)viewer)->comm; 74088e32edaSLois Curfman McInnes 7413a40ed3dSBarry Smith PetscFunctionBegin; 742d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 74329bbc08cSBarry Smith if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"view must have one processor"); 744b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 7450752156aSBarry Smith ierr = PetscBinaryRead(fd,header,4,PETSC_INT);CHKERRQ(ierr); 746*0700a824SBarry Smith if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Not matrix object"); 74788e32edaSLois Curfman McInnes M = header[1]; N = header[2]; nz = header[3]; 74888e32edaSLois Curfman McInnes 74990ace30eSBarry Smith if (nz == MATRIX_BINARY_FORMAT_DENSE) { /* matrix in file is dense */ 750f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 751f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,M,N,M,N);CHKERRQ(ierr); 752be5d1d56SKris Buschelman ierr = MatSetType(*A,type);CHKERRQ(ierr); 7535c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(*A,PETSC_NULL);CHKERRQ(ierr); 75490ace30eSBarry Smith B = *A; 75590ace30eSBarry Smith a = (Mat_SeqDense*)B->data; 7564a41a4d3SSatish Balay v = a->v; 7574a41a4d3SSatish Balay /* Allocate some temp space to read in the values and then flip them 7584a41a4d3SSatish Balay from row major to column major */ 759b72907f3SBarry Smith ierr = PetscMalloc((M*N > 0 ? M*N : 1)*sizeof(PetscScalar),&w);CHKERRQ(ierr); 76090ace30eSBarry Smith /* read in nonzero values */ 7614a41a4d3SSatish Balay ierr = PetscBinaryRead(fd,w,M*N,PETSC_SCALAR);CHKERRQ(ierr); 7624a41a4d3SSatish Balay /* now flip the values and store them in the matrix*/ 7634a41a4d3SSatish Balay for (j=0; j<N; j++) { 7644a41a4d3SSatish Balay for (i=0; i<M; i++) { 7654a41a4d3SSatish Balay *v++ =w[i*N+j]; 7664a41a4d3SSatish Balay } 7674a41a4d3SSatish Balay } 768606d414cSSatish Balay ierr = PetscFree(w);CHKERRQ(ierr); 7696d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7706d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 77190ace30eSBarry Smith } else { 77288e32edaSLois Curfman McInnes /* read row lengths */ 77313f74950SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 7740752156aSBarry Smith ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 77588e32edaSLois Curfman McInnes 77688e32edaSLois Curfman McInnes /* create our matrix */ 777f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 778f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,M,N,M,N);CHKERRQ(ierr); 779be5d1d56SKris Buschelman ierr = MatSetType(*A,type);CHKERRQ(ierr); 7805c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(*A,PETSC_NULL);CHKERRQ(ierr); 78188e32edaSLois Curfman McInnes B = *A; 78288e32edaSLois Curfman McInnes a = (Mat_SeqDense*)B->data; 78388e32edaSLois Curfman McInnes v = a->v; 78488e32edaSLois Curfman McInnes 78588e32edaSLois Curfman McInnes /* read column indices and nonzeros */ 78613f74950SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&scols);CHKERRQ(ierr); 787b0a32e0cSBarry Smith cols = scols; 7880752156aSBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 78987828ca2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&svals);CHKERRQ(ierr); 790b0a32e0cSBarry Smith vals = svals; 7910752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 79288e32edaSLois Curfman McInnes 79388e32edaSLois Curfman McInnes /* insert into matrix */ 79488e32edaSLois Curfman McInnes for (i=0; i<M; i++) { 79588e32edaSLois Curfman McInnes for (j=0; j<rowlengths[i]; j++) v[i+M*scols[j]] = svals[j]; 79688e32edaSLois Curfman McInnes svals += rowlengths[i]; scols += rowlengths[i]; 79788e32edaSLois Curfman McInnes } 798606d414cSSatish Balay ierr = PetscFree(vals);CHKERRQ(ierr); 799606d414cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 800606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 80188e32edaSLois Curfman McInnes 8026d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 8036d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 80490ace30eSBarry Smith } 8053a40ed3dSBarry Smith PetscFunctionReturn(0); 80688e32edaSLois Curfman McInnes } 80788e32edaSLois Curfman McInnes 8084a2ae208SSatish Balay #undef __FUNCT__ 8094a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqDense_ASCII" 8106849ba73SBarry Smith static PetscErrorCode MatView_SeqDense_ASCII(Mat A,PetscViewer viewer) 811289bc588SBarry Smith { 812932b0c3eSLois Curfman McInnes Mat_SeqDense *a = (Mat_SeqDense*)A->data; 813dfbe8321SBarry Smith PetscErrorCode ierr; 81413f74950SBarry Smith PetscInt i,j; 8152dcb1b2aSMatthew Knepley const char *name; 81687828ca2SBarry Smith PetscScalar *v; 817f3ef73ceSBarry Smith PetscViewerFormat format; 8185f481a85SSatish Balay #if defined(PETSC_USE_COMPLEX) 8195f481a85SSatish Balay PetscTruth allreal = PETSC_TRUE; 8205f481a85SSatish Balay #endif 821932b0c3eSLois Curfman McInnes 8223a40ed3dSBarry Smith PetscFunctionBegin; 823435da068SBarry Smith ierr = PetscObjectGetName((PetscObject)A,&name);CHKERRQ(ierr); 824b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 825456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 8263a40ed3dSBarry Smith PetscFunctionReturn(0); /* do nothing for now */ 827fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_COMMON) { 828b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr); 829d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++) { 83044cd7ae7SLois Curfman McInnes v = a->v + i; 83177431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr); 832d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 833aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 834329f5518SBarry Smith if (PetscRealPart(*v) != 0.0 && PetscImaginaryPart(*v) != 0.0) { 835a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G + %G i) ",j,PetscRealPart(*v),PetscImaginaryPart(*v));CHKERRQ(ierr); 836329f5518SBarry Smith } else if (PetscRealPart(*v)) { 837a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",j,PetscRealPart(*v));CHKERRQ(ierr); 8386831982aSBarry Smith } 83980cd9d93SLois Curfman McInnes #else 8406831982aSBarry Smith if (*v) { 841a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",j,*v);CHKERRQ(ierr); 8426831982aSBarry Smith } 84380cd9d93SLois Curfman McInnes #endif 8441b807ce4Svictorle v += a->lda; 84580cd9d93SLois Curfman McInnes } 846b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 84780cd9d93SLois Curfman McInnes } 848b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr); 8493a40ed3dSBarry Smith } else { 850b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr); 851aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 85247989497SBarry Smith /* determine if matrix has all real values */ 85347989497SBarry Smith v = a->v; 854d0f46423SBarry Smith for (i=0; i<A->rmap->n*A->cmap->n; i++) { 855ffac6cdbSBarry Smith if (PetscImaginaryPart(v[i])) { allreal = PETSC_FALSE; break ;} 85647989497SBarry Smith } 85747989497SBarry Smith #endif 858fb9695e5SSatish Balay if (format == PETSC_VIEWER_ASCII_MATLAB) { 8593a7fca6bSBarry Smith ierr = PetscObjectGetName((PetscObject)A,&name);CHKERRQ(ierr); 860d0f46423SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"%% Size = %D %D \n",A->rmap->n,A->cmap->n);CHKERRQ(ierr); 861d0f46423SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"%s = zeros(%D,%D);\n",name,A->rmap->n,A->cmap->n);CHKERRQ(ierr); 862fb9695e5SSatish Balay ierr = PetscViewerASCIIPrintf(viewer,"%s = [\n",name);CHKERRQ(ierr); 863ffac6cdbSBarry Smith } 864ffac6cdbSBarry Smith 865d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++) { 866932b0c3eSLois Curfman McInnes v = a->v + i; 867d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 868aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 86947989497SBarry Smith if (allreal) { 870f32d5d43SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"%18.16e ",PetscRealPart(*v));CHKERRQ(ierr); 87147989497SBarry Smith } else { 872f32d5d43SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"%18.16e + %18.16e i ",PetscRealPart(*v),PetscImaginaryPart(*v));CHKERRQ(ierr); 87347989497SBarry Smith } 874289bc588SBarry Smith #else 875f32d5d43SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"%18.16e ",*v);CHKERRQ(ierr); 876289bc588SBarry Smith #endif 8771b807ce4Svictorle v += a->lda; 878289bc588SBarry Smith } 879b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 880289bc588SBarry Smith } 881fb9695e5SSatish Balay if (format == PETSC_VIEWER_ASCII_MATLAB) { 882b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"];\n");CHKERRQ(ierr); 883ffac6cdbSBarry Smith } 884b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr); 885da3a660dSBarry Smith } 886b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 8873a40ed3dSBarry Smith PetscFunctionReturn(0); 888289bc588SBarry Smith } 889289bc588SBarry Smith 8904a2ae208SSatish Balay #undef __FUNCT__ 8914a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqDense_Binary" 8926849ba73SBarry Smith static PetscErrorCode MatView_SeqDense_Binary(Mat A,PetscViewer viewer) 893932b0c3eSLois Curfman McInnes { 894932b0c3eSLois Curfman McInnes Mat_SeqDense *a = (Mat_SeqDense*)A->data; 8956849ba73SBarry Smith PetscErrorCode ierr; 89613f74950SBarry Smith int fd; 897d0f46423SBarry Smith PetscInt ict,j,n = A->cmap->n,m = A->rmap->n,i,*col_lens,nz = m*n; 89887828ca2SBarry Smith PetscScalar *v,*anonz,*vals; 899f3ef73ceSBarry Smith PetscViewerFormat format; 900932b0c3eSLois Curfman McInnes 9013a40ed3dSBarry Smith PetscFunctionBegin; 902b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 90390ace30eSBarry Smith 904b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 9057973ad04SBarry Smith if (format == PETSC_VIEWER_NATIVE) { 90690ace30eSBarry Smith /* store the matrix as a dense matrix */ 90713f74950SBarry Smith ierr = PetscMalloc(4*sizeof(PetscInt),&col_lens);CHKERRQ(ierr); 908*0700a824SBarry Smith col_lens[0] = MAT_FILE_CLASSID; 90990ace30eSBarry Smith col_lens[1] = m; 91090ace30eSBarry Smith col_lens[2] = n; 91190ace30eSBarry Smith col_lens[3] = MATRIX_BINARY_FORMAT_DENSE; 9126f69ff64SBarry Smith ierr = PetscBinaryWrite(fd,col_lens,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 913606d414cSSatish Balay ierr = PetscFree(col_lens);CHKERRQ(ierr); 91490ace30eSBarry Smith 91590ace30eSBarry Smith /* write out matrix, by rows */ 91687828ca2SBarry Smith ierr = PetscMalloc((m*n+1)*sizeof(PetscScalar),&vals);CHKERRQ(ierr); 91790ace30eSBarry Smith v = a->v; 91890ace30eSBarry Smith for (j=0; j<n; j++) { 919578230a0SSatish Balay for (i=0; i<m; i++) { 920578230a0SSatish Balay vals[j + i*n] = *v++; 92190ace30eSBarry Smith } 92290ace30eSBarry Smith } 9236f69ff64SBarry Smith ierr = PetscBinaryWrite(fd,vals,n*m,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 924606d414cSSatish Balay ierr = PetscFree(vals);CHKERRQ(ierr); 92590ace30eSBarry Smith } else { 92613f74950SBarry Smith ierr = PetscMalloc((4+nz)*sizeof(PetscInt),&col_lens);CHKERRQ(ierr); 927*0700a824SBarry Smith col_lens[0] = MAT_FILE_CLASSID; 928932b0c3eSLois Curfman McInnes col_lens[1] = m; 929932b0c3eSLois Curfman McInnes col_lens[2] = n; 930932b0c3eSLois Curfman McInnes col_lens[3] = nz; 931932b0c3eSLois Curfman McInnes 932932b0c3eSLois Curfman McInnes /* store lengths of each row and write (including header) to file */ 933932b0c3eSLois Curfman McInnes for (i=0; i<m; i++) col_lens[4+i] = n; 9346f69ff64SBarry Smith ierr = PetscBinaryWrite(fd,col_lens,4+m,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 935932b0c3eSLois Curfman McInnes 936932b0c3eSLois Curfman McInnes /* Possibly should write in smaller increments, not whole matrix at once? */ 937932b0c3eSLois Curfman McInnes /* store column indices (zero start index) */ 938932b0c3eSLois Curfman McInnes ict = 0; 939932b0c3eSLois Curfman McInnes for (i=0; i<m; i++) { 940932b0c3eSLois Curfman McInnes for (j=0; j<n; j++) col_lens[ict++] = j; 941932b0c3eSLois Curfman McInnes } 9426f69ff64SBarry Smith ierr = PetscBinaryWrite(fd,col_lens,nz,PETSC_INT,PETSC_FALSE);CHKERRQ(ierr); 943606d414cSSatish Balay ierr = PetscFree(col_lens);CHKERRQ(ierr); 944932b0c3eSLois Curfman McInnes 945932b0c3eSLois Curfman McInnes /* store nonzero values */ 94687828ca2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&anonz);CHKERRQ(ierr); 947932b0c3eSLois Curfman McInnes ict = 0; 948932b0c3eSLois Curfman McInnes for (i=0; i<m; i++) { 949932b0c3eSLois Curfman McInnes v = a->v + i; 950932b0c3eSLois Curfman McInnes for (j=0; j<n; j++) { 9511b807ce4Svictorle anonz[ict++] = *v; v += a->lda; 952932b0c3eSLois Curfman McInnes } 953932b0c3eSLois Curfman McInnes } 9546f69ff64SBarry Smith ierr = PetscBinaryWrite(fd,anonz,nz,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 955606d414cSSatish Balay ierr = PetscFree(anonz);CHKERRQ(ierr); 95690ace30eSBarry Smith } 9573a40ed3dSBarry Smith PetscFunctionReturn(0); 958932b0c3eSLois Curfman McInnes } 959932b0c3eSLois Curfman McInnes 9604a2ae208SSatish Balay #undef __FUNCT__ 9614a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqDense_Draw_Zoom" 962dfbe8321SBarry Smith PetscErrorCode MatView_SeqDense_Draw_Zoom(PetscDraw draw,void *Aa) 963f1af5d2fSBarry Smith { 964f1af5d2fSBarry Smith Mat A = (Mat) Aa; 965f1af5d2fSBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 9666849ba73SBarry Smith PetscErrorCode ierr; 967d0f46423SBarry Smith PetscInt m = A->rmap->n,n = A->cmap->n,color,i,j; 96887828ca2SBarry Smith PetscScalar *v = a->v; 969b0a32e0cSBarry Smith PetscViewer viewer; 970b0a32e0cSBarry Smith PetscDraw popup; 971329f5518SBarry Smith PetscReal xl,yl,xr,yr,x_l,x_r,y_l,y_r,scale,maxv = 0.0; 972f3ef73ceSBarry Smith PetscViewerFormat format; 973f1af5d2fSBarry Smith 974f1af5d2fSBarry Smith PetscFunctionBegin; 975f1af5d2fSBarry Smith 976f1af5d2fSBarry Smith ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr); 977b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 978b0a32e0cSBarry Smith ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr); 979f1af5d2fSBarry Smith 980f1af5d2fSBarry Smith /* Loop over matrix elements drawing boxes */ 981fb9695e5SSatish Balay if (format != PETSC_VIEWER_DRAW_CONTOUR) { 982f1af5d2fSBarry Smith /* Blue for negative and Red for positive */ 983b0a32e0cSBarry Smith color = PETSC_DRAW_BLUE; 984f1af5d2fSBarry Smith for(j = 0; j < n; j++) { 985f1af5d2fSBarry Smith x_l = j; 986f1af5d2fSBarry Smith x_r = x_l + 1.0; 987f1af5d2fSBarry Smith for(i = 0; i < m; i++) { 988f1af5d2fSBarry Smith y_l = m - i - 1.0; 989f1af5d2fSBarry Smith y_r = y_l + 1.0; 990f1af5d2fSBarry Smith #if defined(PETSC_USE_COMPLEX) 991329f5518SBarry Smith if (PetscRealPart(v[j*m+i]) > 0.) { 992b0a32e0cSBarry Smith color = PETSC_DRAW_RED; 993329f5518SBarry Smith } else if (PetscRealPart(v[j*m+i]) < 0.) { 994b0a32e0cSBarry Smith color = PETSC_DRAW_BLUE; 995f1af5d2fSBarry Smith } else { 996f1af5d2fSBarry Smith continue; 997f1af5d2fSBarry Smith } 998f1af5d2fSBarry Smith #else 999f1af5d2fSBarry Smith if (v[j*m+i] > 0.) { 1000b0a32e0cSBarry Smith color = PETSC_DRAW_RED; 1001f1af5d2fSBarry Smith } else if (v[j*m+i] < 0.) { 1002b0a32e0cSBarry Smith color = PETSC_DRAW_BLUE; 1003f1af5d2fSBarry Smith } else { 1004f1af5d2fSBarry Smith continue; 1005f1af5d2fSBarry Smith } 1006f1af5d2fSBarry Smith #endif 1007b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr); 1008f1af5d2fSBarry Smith } 1009f1af5d2fSBarry Smith } 1010f1af5d2fSBarry Smith } else { 1011f1af5d2fSBarry Smith /* use contour shading to indicate magnitude of values */ 1012f1af5d2fSBarry Smith /* first determine max of all nonzero values */ 1013f1af5d2fSBarry Smith for(i = 0; i < m*n; i++) { 1014f1af5d2fSBarry Smith if (PetscAbsScalar(v[i]) > maxv) maxv = PetscAbsScalar(v[i]); 1015f1af5d2fSBarry Smith } 1016b0a32e0cSBarry Smith scale = (245.0 - PETSC_DRAW_BASIC_COLORS)/maxv; 1017b0a32e0cSBarry Smith ierr = PetscDrawGetPopup(draw,&popup);CHKERRQ(ierr); 1018b0a32e0cSBarry Smith if (popup) {ierr = PetscDrawScalePopup(popup,0.0,maxv);CHKERRQ(ierr);} 1019f1af5d2fSBarry Smith for(j = 0; j < n; j++) { 1020f1af5d2fSBarry Smith x_l = j; 1021f1af5d2fSBarry Smith x_r = x_l + 1.0; 1022f1af5d2fSBarry Smith for(i = 0; i < m; i++) { 1023f1af5d2fSBarry Smith y_l = m - i - 1.0; 1024f1af5d2fSBarry Smith y_r = y_l + 1.0; 1025b0a32e0cSBarry Smith color = PETSC_DRAW_BASIC_COLORS + (int)(scale*PetscAbsScalar(v[j*m+i])); 1026b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr); 1027f1af5d2fSBarry Smith } 1028f1af5d2fSBarry Smith } 1029f1af5d2fSBarry Smith } 1030f1af5d2fSBarry Smith PetscFunctionReturn(0); 1031f1af5d2fSBarry Smith } 1032f1af5d2fSBarry Smith 10334a2ae208SSatish Balay #undef __FUNCT__ 10344a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqDense_Draw" 1035dfbe8321SBarry Smith PetscErrorCode MatView_SeqDense_Draw(Mat A,PetscViewer viewer) 1036f1af5d2fSBarry Smith { 1037b0a32e0cSBarry Smith PetscDraw draw; 1038f1af5d2fSBarry Smith PetscTruth isnull; 1039329f5518SBarry Smith PetscReal xr,yr,xl,yl,h,w; 1040dfbe8321SBarry Smith PetscErrorCode ierr; 1041f1af5d2fSBarry Smith 1042f1af5d2fSBarry Smith PetscFunctionBegin; 1043b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 1044b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 1045abc0a331SBarry Smith if (isnull) PetscFunctionReturn(0); 1046f1af5d2fSBarry Smith 1047f1af5d2fSBarry Smith ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr); 1048d0f46423SBarry Smith xr = A->cmap->n; yr = A->rmap->n; h = yr/10.0; w = xr/10.0; 1049f1af5d2fSBarry Smith xr += w; yr += h; xl = -w; yl = -h; 1050b0a32e0cSBarry Smith ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr); 1051b0a32e0cSBarry Smith ierr = PetscDrawZoom(draw,MatView_SeqDense_Draw_Zoom,A);CHKERRQ(ierr); 1052f1af5d2fSBarry Smith ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",PETSC_NULL);CHKERRQ(ierr); 1053f1af5d2fSBarry Smith PetscFunctionReturn(0); 1054f1af5d2fSBarry Smith } 1055f1af5d2fSBarry Smith 10564a2ae208SSatish Balay #undef __FUNCT__ 10574a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqDense" 1058dfbe8321SBarry Smith PetscErrorCode MatView_SeqDense(Mat A,PetscViewer viewer) 1059932b0c3eSLois Curfman McInnes { 1060dfbe8321SBarry Smith PetscErrorCode ierr; 10616805f65bSBarry Smith PetscTruth iascii,isbinary,isdraw; 1062932b0c3eSLois Curfman McInnes 10633a40ed3dSBarry Smith PetscFunctionBegin; 106432077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 1065fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 1066fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 10670f5bd95cSBarry Smith 1068c45a1595SBarry Smith if (iascii) { 1069c45a1595SBarry Smith ierr = MatView_SeqDense_ASCII(A,viewer);CHKERRQ(ierr); 10700f5bd95cSBarry Smith } else if (isbinary) { 10713a40ed3dSBarry Smith ierr = MatView_SeqDense_Binary(A,viewer);CHKERRQ(ierr); 1072f1af5d2fSBarry Smith } else if (isdraw) { 1073f1af5d2fSBarry Smith ierr = MatView_SeqDense_Draw(A,viewer);CHKERRQ(ierr); 10745cd90555SBarry Smith } else { 1075958c9bccSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by dense matrix",((PetscObject)viewer)->type_name); 1076932b0c3eSLois Curfman McInnes } 10773a40ed3dSBarry Smith PetscFunctionReturn(0); 1078932b0c3eSLois Curfman McInnes } 1079289bc588SBarry Smith 10804a2ae208SSatish Balay #undef __FUNCT__ 10814a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_SeqDense" 1082dfbe8321SBarry Smith PetscErrorCode MatDestroy_SeqDense(Mat mat) 1083289bc588SBarry Smith { 1084ec8511deSBarry Smith Mat_SeqDense *l = (Mat_SeqDense*)mat->data; 1085dfbe8321SBarry Smith PetscErrorCode ierr; 108690f02eecSBarry Smith 10873a40ed3dSBarry Smith PetscFunctionBegin; 1088aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1089d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows %D Cols %D",mat->rmap->n,mat->cmap->n); 1090a5a9c739SBarry Smith #endif 109105b42c5fSBarry Smith ierr = PetscFree(l->pivots);CHKERRQ(ierr); 10926857c123SSatish Balay if (!l->user_alloc) {ierr = PetscFree(l->v);CHKERRQ(ierr);} 1093606d414cSSatish Balay ierr = PetscFree(l);CHKERRQ(ierr); 1094dbd8c25aSHong Zhang 1095dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 1096901853e0SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatSeqDenseSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 10974ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMult_seqaij_seqdense_C","",PETSC_NULL);CHKERRQ(ierr); 10984ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMultSymbolic_seqaij_seqdense_C","",PETSC_NULL);CHKERRQ(ierr); 10994ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMultNumeric_seqaij_seqdense_C","",PETSC_NULL);CHKERRQ(ierr); 11003a40ed3dSBarry Smith PetscFunctionReturn(0); 1101289bc588SBarry Smith } 1102289bc588SBarry Smith 11034a2ae208SSatish Balay #undef __FUNCT__ 11044a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_SeqDense" 1105fc4dec0aSBarry Smith PetscErrorCode MatTranspose_SeqDense(Mat A,MatReuse reuse,Mat *matout) 1106289bc588SBarry Smith { 1107c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 11086849ba73SBarry Smith PetscErrorCode ierr; 110913f74950SBarry Smith PetscInt k,j,m,n,M; 111087828ca2SBarry Smith PetscScalar *v,tmp; 111148b35521SBarry Smith 11123a40ed3dSBarry Smith PetscFunctionBegin; 1113d0f46423SBarry Smith v = mat->v; m = A->rmap->n; M = mat->lda; n = A->cmap->n; 1114e9695a30SBarry Smith if (reuse == MAT_REUSE_MATRIX && *matout == A) { /* in place transpose */ 1115a5ce6ee0Svictorle if (m != n) { 1116634064b4SBarry Smith SETERRQ(PETSC_ERR_SUP,"Can not transpose non-square matrix in place"); 1117d64ed03dSBarry Smith } else { 1118d3e5ee88SLois Curfman McInnes for (j=0; j<m; j++) { 1119289bc588SBarry Smith for (k=0; k<j; k++) { 11201b807ce4Svictorle tmp = v[j + k*M]; 11211b807ce4Svictorle v[j + k*M] = v[k + j*M]; 11221b807ce4Svictorle v[k + j*M] = tmp; 1123289bc588SBarry Smith } 1124289bc588SBarry Smith } 1125d64ed03dSBarry Smith } 11263a40ed3dSBarry Smith } else { /* out-of-place transpose */ 1127d3e5ee88SLois Curfman McInnes Mat tmat; 1128ec8511deSBarry Smith Mat_SeqDense *tmatd; 112987828ca2SBarry Smith PetscScalar *v2; 1130ea709b57SSatish Balay 1131fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX) { 11327adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&tmat);CHKERRQ(ierr); 1133d0f46423SBarry Smith ierr = MatSetSizes(tmat,A->cmap->n,A->rmap->n,A->cmap->n,A->rmap->n);CHKERRQ(ierr); 11347adad957SLisandro Dalcin ierr = MatSetType(tmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 11355c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(tmat,PETSC_NULL);CHKERRQ(ierr); 1136fc4dec0aSBarry Smith } else { 1137fc4dec0aSBarry Smith tmat = *matout; 1138fc4dec0aSBarry Smith } 1139ec8511deSBarry Smith tmatd = (Mat_SeqDense*)tmat->data; 11400de55854SLois Curfman McInnes v = mat->v; v2 = tmatd->v; 1141d3e5ee88SLois Curfman McInnes for (j=0; j<n; j++) { 11421b807ce4Svictorle for (k=0; k<m; k++) v2[j + k*n] = v[k + j*M]; 1143d3e5ee88SLois Curfman McInnes } 11446d4a8577SBarry Smith ierr = MatAssemblyBegin(tmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 11456d4a8577SBarry Smith ierr = MatAssemblyEnd(tmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1146d3e5ee88SLois Curfman McInnes *matout = tmat; 114748b35521SBarry Smith } 11483a40ed3dSBarry Smith PetscFunctionReturn(0); 1149289bc588SBarry Smith } 1150289bc588SBarry Smith 11514a2ae208SSatish Balay #undef __FUNCT__ 11524a2ae208SSatish Balay #define __FUNCT__ "MatEqual_SeqDense" 1153dfbe8321SBarry Smith PetscErrorCode MatEqual_SeqDense(Mat A1,Mat A2,PetscTruth *flg) 1154289bc588SBarry Smith { 1155c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat1 = (Mat_SeqDense*)A1->data; 1156c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat2 = (Mat_SeqDense*)A2->data; 115713f74950SBarry Smith PetscInt i,j; 115887828ca2SBarry Smith PetscScalar *v1 = mat1->v,*v2 = mat2->v; 11599ea5d5aeSSatish Balay 11603a40ed3dSBarry Smith PetscFunctionBegin; 1161d0f46423SBarry Smith if (A1->rmap->n != A2->rmap->n) {*flg = PETSC_FALSE; PetscFunctionReturn(0);} 1162d0f46423SBarry Smith if (A1->cmap->n != A2->cmap->n) {*flg = PETSC_FALSE; PetscFunctionReturn(0);} 1163d0f46423SBarry Smith for (i=0; i<A1->rmap->n; i++) { 11641b807ce4Svictorle v1 = mat1->v+i; v2 = mat2->v+i; 1165d0f46423SBarry Smith for (j=0; j<A1->cmap->n; j++) { 11663a40ed3dSBarry Smith if (*v1 != *v2) {*flg = PETSC_FALSE; PetscFunctionReturn(0);} 11671b807ce4Svictorle v1 += mat1->lda; v2 += mat2->lda; 11681b807ce4Svictorle } 1169289bc588SBarry Smith } 117077c4ece6SBarry Smith *flg = PETSC_TRUE; 11713a40ed3dSBarry Smith PetscFunctionReturn(0); 1172289bc588SBarry Smith } 1173289bc588SBarry Smith 11744a2ae208SSatish Balay #undef __FUNCT__ 11754a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_SeqDense" 1176dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_SeqDense(Mat A,Vec v) 1177289bc588SBarry Smith { 1178c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 1179dfbe8321SBarry Smith PetscErrorCode ierr; 118013f74950SBarry Smith PetscInt i,n,len; 118187828ca2SBarry Smith PetscScalar *x,zero = 0.0; 118244cd7ae7SLois Curfman McInnes 11833a40ed3dSBarry Smith PetscFunctionBegin; 11842dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 11857a97a34bSBarry Smith ierr = VecGetSize(v,&n);CHKERRQ(ierr); 11861ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 1187d0f46423SBarry Smith len = PetscMin(A->rmap->n,A->cmap->n); 1188d0f46423SBarry Smith if (n != A->rmap->n) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 118944cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 11901b807ce4Svictorle x[i] = mat->v[i*mat->lda + i]; 1191289bc588SBarry Smith } 11921ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 11933a40ed3dSBarry Smith PetscFunctionReturn(0); 1194289bc588SBarry Smith } 1195289bc588SBarry Smith 11964a2ae208SSatish Balay #undef __FUNCT__ 11974a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_SeqDense" 1198dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_SeqDense(Mat A,Vec ll,Vec rr) 1199289bc588SBarry Smith { 1200c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 120187828ca2SBarry Smith PetscScalar *l,*r,x,*v; 1202dfbe8321SBarry Smith PetscErrorCode ierr; 1203d0f46423SBarry Smith PetscInt i,j,m = A->rmap->n,n = A->cmap->n; 120455659b69SBarry Smith 12053a40ed3dSBarry Smith PetscFunctionBegin; 120628988994SBarry Smith if (ll) { 12077a97a34bSBarry Smith ierr = VecGetSize(ll,&m);CHKERRQ(ierr); 12081ebc52fbSHong Zhang ierr = VecGetArray(ll,&l);CHKERRQ(ierr); 1209d0f46423SBarry Smith if (m != A->rmap->n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left scaling vec wrong size"); 1210da3a660dSBarry Smith for (i=0; i<m; i++) { 1211da3a660dSBarry Smith x = l[i]; 1212da3a660dSBarry Smith v = mat->v + i; 1213da3a660dSBarry Smith for (j=0; j<n; j++) { (*v) *= x; v+= m;} 1214da3a660dSBarry Smith } 12151ebc52fbSHong Zhang ierr = VecRestoreArray(ll,&l);CHKERRQ(ierr); 1216efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 1217da3a660dSBarry Smith } 121828988994SBarry Smith if (rr) { 12197a97a34bSBarry Smith ierr = VecGetSize(rr,&n);CHKERRQ(ierr); 12201ebc52fbSHong Zhang ierr = VecGetArray(rr,&r);CHKERRQ(ierr); 1221d0f46423SBarry Smith if (n != A->cmap->n) SETERRQ(PETSC_ERR_ARG_SIZ,"Right scaling vec wrong size"); 1222da3a660dSBarry Smith for (i=0; i<n; i++) { 1223da3a660dSBarry Smith x = r[i]; 1224da3a660dSBarry Smith v = mat->v + i*m; 1225da3a660dSBarry Smith for (j=0; j<m; j++) { (*v++) *= x;} 1226da3a660dSBarry Smith } 12271ebc52fbSHong Zhang ierr = VecRestoreArray(rr,&r);CHKERRQ(ierr); 1228efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 1229da3a660dSBarry Smith } 12303a40ed3dSBarry Smith PetscFunctionReturn(0); 1231289bc588SBarry Smith } 1232289bc588SBarry Smith 12334a2ae208SSatish Balay #undef __FUNCT__ 12344a2ae208SSatish Balay #define __FUNCT__ "MatNorm_SeqDense" 1235dfbe8321SBarry Smith PetscErrorCode MatNorm_SeqDense(Mat A,NormType type,PetscReal *nrm) 1236289bc588SBarry Smith { 1237c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 123887828ca2SBarry Smith PetscScalar *v = mat->v; 1239329f5518SBarry Smith PetscReal sum = 0.0; 1240d0f46423SBarry Smith PetscInt lda=mat->lda,m=A->rmap->n,i,j; 1241efee365bSSatish Balay PetscErrorCode ierr; 124255659b69SBarry Smith 12433a40ed3dSBarry Smith PetscFunctionBegin; 1244289bc588SBarry Smith if (type == NORM_FROBENIUS) { 1245a5ce6ee0Svictorle if (lda>m) { 1246d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 1247a5ce6ee0Svictorle v = mat->v+j*lda; 1248a5ce6ee0Svictorle for (i=0; i<m; i++) { 1249a5ce6ee0Svictorle #if defined(PETSC_USE_COMPLEX) 1250a5ce6ee0Svictorle sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 1251a5ce6ee0Svictorle #else 1252a5ce6ee0Svictorle sum += (*v)*(*v); v++; 1253a5ce6ee0Svictorle #endif 1254a5ce6ee0Svictorle } 1255a5ce6ee0Svictorle } 1256a5ce6ee0Svictorle } else { 1257d0f46423SBarry Smith for (i=0; i<A->cmap->n*A->rmap->n; i++) { 1258aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 1259329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 1260289bc588SBarry Smith #else 1261289bc588SBarry Smith sum += (*v)*(*v); v++; 1262289bc588SBarry Smith #endif 1263289bc588SBarry Smith } 1264a5ce6ee0Svictorle } 1265064f8208SBarry Smith *nrm = sqrt(sum); 1266dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*A->cmap->n*A->rmap->n);CHKERRQ(ierr); 12673a40ed3dSBarry Smith } else if (type == NORM_1) { 1268064f8208SBarry Smith *nrm = 0.0; 1269d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 12701b807ce4Svictorle v = mat->v + j*mat->lda; 1271289bc588SBarry Smith sum = 0.0; 1272d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++) { 127333a8263dSBarry Smith sum += PetscAbsScalar(*v); v++; 1274289bc588SBarry Smith } 1275064f8208SBarry Smith if (sum > *nrm) *nrm = sum; 1276289bc588SBarry Smith } 1277d0f46423SBarry Smith ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr); 12783a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { 1279064f8208SBarry Smith *nrm = 0.0; 1280d0f46423SBarry Smith for (j=0; j<A->rmap->n; j++) { 1281289bc588SBarry Smith v = mat->v + j; 1282289bc588SBarry Smith sum = 0.0; 1283d0f46423SBarry Smith for (i=0; i<A->cmap->n; i++) { 12841b807ce4Svictorle sum += PetscAbsScalar(*v); v += mat->lda; 1285289bc588SBarry Smith } 1286064f8208SBarry Smith if (sum > *nrm) *nrm = sum; 1287289bc588SBarry Smith } 1288d0f46423SBarry Smith ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr); 12893a40ed3dSBarry Smith } else { 129029bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No two norm"); 1291289bc588SBarry Smith } 12923a40ed3dSBarry Smith PetscFunctionReturn(0); 1293289bc588SBarry Smith } 1294289bc588SBarry Smith 12954a2ae208SSatish Balay #undef __FUNCT__ 12964a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_SeqDense" 12974e0d8c25SBarry Smith PetscErrorCode MatSetOption_SeqDense(Mat A,MatOption op,PetscTruth flg) 1298289bc588SBarry Smith { 1299c0bbcb79SLois Curfman McInnes Mat_SeqDense *aij = (Mat_SeqDense*)A->data; 130063ba0a88SBarry Smith PetscErrorCode ierr; 130167e560aaSBarry Smith 13023a40ed3dSBarry Smith PetscFunctionBegin; 1303b5a2b587SKris Buschelman switch (op) { 1304b5a2b587SKris Buschelman case MAT_ROW_ORIENTED: 13054e0d8c25SBarry Smith aij->roworiented = flg; 1306b5a2b587SKris Buschelman break; 1307512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1308b5a2b587SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 13093971808eSMatthew Knepley case MAT_NEW_NONZERO_ALLOCATION_ERR: 13104e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1311b5a2b587SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1312b5a2b587SKris Buschelman case MAT_USE_HASH_TABLE: 131377e54ba9SKris Buschelman case MAT_SYMMETRIC: 131477e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 13159a4540c5SBarry Smith case MAT_HERMITIAN: 13169a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1317600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 1318290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 131977e54ba9SKris Buschelman break; 1320b5a2b587SKris Buschelman default: 1321600fe468SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 13223a40ed3dSBarry Smith } 13233a40ed3dSBarry Smith PetscFunctionReturn(0); 1324289bc588SBarry Smith } 1325289bc588SBarry Smith 13264a2ae208SSatish Balay #undef __FUNCT__ 13274a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_SeqDense" 1328dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_SeqDense(Mat A) 13296f0a148fSBarry Smith { 1330ec8511deSBarry Smith Mat_SeqDense *l = (Mat_SeqDense*)A->data; 13316849ba73SBarry Smith PetscErrorCode ierr; 1332d0f46423SBarry Smith PetscInt lda=l->lda,m=A->rmap->n,j; 13333a40ed3dSBarry Smith 13343a40ed3dSBarry Smith PetscFunctionBegin; 1335a5ce6ee0Svictorle if (lda>m) { 1336d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 1337a5ce6ee0Svictorle ierr = PetscMemzero(l->v+j*lda,m*sizeof(PetscScalar));CHKERRQ(ierr); 1338a5ce6ee0Svictorle } 1339a5ce6ee0Svictorle } else { 1340d0f46423SBarry Smith ierr = PetscMemzero(l->v,A->rmap->n*A->cmap->n*sizeof(PetscScalar));CHKERRQ(ierr); 1341a5ce6ee0Svictorle } 13423a40ed3dSBarry Smith PetscFunctionReturn(0); 13436f0a148fSBarry Smith } 13446f0a148fSBarry Smith 13454a2ae208SSatish Balay #undef __FUNCT__ 13464a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqDense" 1347f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_SeqDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag) 13486f0a148fSBarry Smith { 1349ec8511deSBarry Smith Mat_SeqDense *l = (Mat_SeqDense*)A->data; 1350d0f46423SBarry Smith PetscInt n = A->cmap->n,i,j; 135187828ca2SBarry Smith PetscScalar *slot; 135255659b69SBarry Smith 13533a40ed3dSBarry Smith PetscFunctionBegin; 13546f0a148fSBarry Smith for (i=0; i<N; i++) { 13556f0a148fSBarry Smith slot = l->v + rows[i]; 13566f0a148fSBarry Smith for (j=0; j<n; j++) { *slot = 0.0; slot += n;} 13576f0a148fSBarry Smith } 1358f4df32b1SMatthew Knepley if (diag != 0.0) { 13596f0a148fSBarry Smith for (i=0; i<N; i++) { 13606f0a148fSBarry Smith slot = l->v + (n+1)*rows[i]; 1361f4df32b1SMatthew Knepley *slot = diag; 13626f0a148fSBarry Smith } 13636f0a148fSBarry Smith } 13643a40ed3dSBarry Smith PetscFunctionReturn(0); 13656f0a148fSBarry Smith } 1366557bce09SLois Curfman McInnes 13674a2ae208SSatish Balay #undef __FUNCT__ 13684a2ae208SSatish Balay #define __FUNCT__ "MatGetArray_SeqDense" 1369dfbe8321SBarry Smith PetscErrorCode MatGetArray_SeqDense(Mat A,PetscScalar *array[]) 137064e87e97SBarry Smith { 1371c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 13723a40ed3dSBarry Smith 13733a40ed3dSBarry Smith PetscFunctionBegin; 1374d0f46423SBarry Smith if (mat->lda != A->rmap->n) SETERRQ(PETSC_ERR_SUP,"Cannot get array for Dense matrices with LDA different from number of rows"); 137564e87e97SBarry Smith *array = mat->v; 13763a40ed3dSBarry Smith PetscFunctionReturn(0); 137764e87e97SBarry Smith } 13780754003eSLois Curfman McInnes 13794a2ae208SSatish Balay #undef __FUNCT__ 13804a2ae208SSatish Balay #define __FUNCT__ "MatRestoreArray_SeqDense" 1381dfbe8321SBarry Smith PetscErrorCode MatRestoreArray_SeqDense(Mat A,PetscScalar *array[]) 1382ff14e315SSatish Balay { 13833a40ed3dSBarry Smith PetscFunctionBegin; 138409b544d4SBarry Smith *array = 0; /* user cannot accidently use the array later */ 13853a40ed3dSBarry Smith PetscFunctionReturn(0); 1386ff14e315SSatish Balay } 13870754003eSLois Curfman McInnes 13884a2ae208SSatish Balay #undef __FUNCT__ 13894a2ae208SSatish Balay #define __FUNCT__ "MatGetSubMatrix_SeqDense" 139013f74950SBarry Smith static PetscErrorCode MatGetSubMatrix_SeqDense(Mat A,IS isrow,IS iscol,PetscInt cs,MatReuse scall,Mat *B) 13910754003eSLois Curfman McInnes { 1392c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 13936849ba73SBarry Smith PetscErrorCode ierr; 13945d0c19d7SBarry Smith PetscInt i,j,nrows,ncols; 13955d0c19d7SBarry Smith const PetscInt *irow,*icol; 139687828ca2SBarry Smith PetscScalar *av,*bv,*v = mat->v; 13970754003eSLois Curfman McInnes Mat newmat; 13980754003eSLois Curfman McInnes 13993a40ed3dSBarry Smith PetscFunctionBegin; 140078b31e54SBarry Smith ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 140178b31e54SBarry Smith ierr = ISGetIndices(iscol,&icol);CHKERRQ(ierr); 1402e03a110bSBarry Smith ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 1403e03a110bSBarry Smith ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 14040754003eSLois Curfman McInnes 1405182d2002SSatish Balay /* Check submatrixcall */ 1406182d2002SSatish Balay if (scall == MAT_REUSE_MATRIX) { 140713f74950SBarry Smith PetscInt n_cols,n_rows; 1408182d2002SSatish Balay ierr = MatGetSize(*B,&n_rows,&n_cols);CHKERRQ(ierr); 140921a2c019SBarry Smith if (n_rows != nrows || n_cols != ncols) { 141021a2c019SBarry Smith /* resize the result result matrix to match number of requested rows/columns */ 1411c61587bbSBarry Smith ierr = MatSetSizes(*B,nrows,ncols,nrows,ncols);CHKERRQ(ierr); 141221a2c019SBarry Smith } 1413182d2002SSatish Balay newmat = *B; 1414182d2002SSatish Balay } else { 14150754003eSLois Curfman McInnes /* Create and fill new matrix */ 14167adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&newmat);CHKERRQ(ierr); 1417f69a0ea3SMatthew Knepley ierr = MatSetSizes(newmat,nrows,ncols,nrows,ncols);CHKERRQ(ierr); 14187adad957SLisandro Dalcin ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 14195c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(newmat,PETSC_NULL);CHKERRQ(ierr); 1420182d2002SSatish Balay } 1421182d2002SSatish Balay 1422182d2002SSatish Balay /* Now extract the data pointers and do the copy,column at a time */ 1423182d2002SSatish Balay bv = ((Mat_SeqDense*)newmat->data)->v; 1424182d2002SSatish Balay 1425182d2002SSatish Balay for (i=0; i<ncols; i++) { 14266de62eeeSBarry Smith av = v + mat->lda*icol[i]; 1427182d2002SSatish Balay for (j=0; j<nrows; j++) { 1428182d2002SSatish Balay *bv++ = av[irow[j]]; 14290754003eSLois Curfman McInnes } 14300754003eSLois Curfman McInnes } 1431182d2002SSatish Balay 1432182d2002SSatish Balay /* Assemble the matrices so that the correct flags are set */ 14336d4a8577SBarry Smith ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 14346d4a8577SBarry Smith ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 14350754003eSLois Curfman McInnes 14360754003eSLois Curfman McInnes /* Free work space */ 143778b31e54SBarry Smith ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 143878b31e54SBarry Smith ierr = ISRestoreIndices(iscol,&icol);CHKERRQ(ierr); 1439182d2002SSatish Balay *B = newmat; 14403a40ed3dSBarry Smith PetscFunctionReturn(0); 14410754003eSLois Curfman McInnes } 14420754003eSLois Curfman McInnes 14434a2ae208SSatish Balay #undef __FUNCT__ 14444a2ae208SSatish Balay #define __FUNCT__ "MatGetSubMatrices_SeqDense" 144513f74950SBarry Smith PetscErrorCode MatGetSubMatrices_SeqDense(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1446905e6a2fSBarry Smith { 14476849ba73SBarry Smith PetscErrorCode ierr; 144813f74950SBarry Smith PetscInt i; 1449905e6a2fSBarry Smith 14503a40ed3dSBarry Smith PetscFunctionBegin; 1451905e6a2fSBarry Smith if (scall == MAT_INITIAL_MATRIX) { 1452b0a32e0cSBarry Smith ierr = PetscMalloc((n+1)*sizeof(Mat),B);CHKERRQ(ierr); 1453905e6a2fSBarry Smith } 1454905e6a2fSBarry Smith 1455905e6a2fSBarry Smith for (i=0; i<n; i++) { 14566a6a5d1dSBarry Smith ierr = MatGetSubMatrix_SeqDense(A,irow[i],icol[i],PETSC_DECIDE,scall,&(*B)[i]);CHKERRQ(ierr); 1457905e6a2fSBarry Smith } 14583a40ed3dSBarry Smith PetscFunctionReturn(0); 1459905e6a2fSBarry Smith } 1460905e6a2fSBarry Smith 14614a2ae208SSatish Balay #undef __FUNCT__ 1462c0aa2d19SHong Zhang #define __FUNCT__ "MatAssemblyBegin_SeqDense" 1463c0aa2d19SHong Zhang PetscErrorCode MatAssemblyBegin_SeqDense(Mat mat,MatAssemblyType mode) 1464c0aa2d19SHong Zhang { 1465c0aa2d19SHong Zhang PetscFunctionBegin; 1466c0aa2d19SHong Zhang PetscFunctionReturn(0); 1467c0aa2d19SHong Zhang } 1468c0aa2d19SHong Zhang 1469c0aa2d19SHong Zhang #undef __FUNCT__ 1470c0aa2d19SHong Zhang #define __FUNCT__ "MatAssemblyEnd_SeqDense" 1471c0aa2d19SHong Zhang PetscErrorCode MatAssemblyEnd_SeqDense(Mat mat,MatAssemblyType mode) 1472c0aa2d19SHong Zhang { 1473c0aa2d19SHong Zhang PetscFunctionBegin; 1474c0aa2d19SHong Zhang PetscFunctionReturn(0); 1475c0aa2d19SHong Zhang } 1476c0aa2d19SHong Zhang 1477c0aa2d19SHong Zhang #undef __FUNCT__ 14784a2ae208SSatish Balay #define __FUNCT__ "MatCopy_SeqDense" 1479dfbe8321SBarry Smith PetscErrorCode MatCopy_SeqDense(Mat A,Mat B,MatStructure str) 14804b0e389bSBarry Smith { 14814b0e389bSBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data,*b = (Mat_SeqDense *)B->data; 14826849ba73SBarry Smith PetscErrorCode ierr; 1483d0f46423SBarry Smith PetscInt lda1=a->lda,lda2=b->lda, m=A->rmap->n,n=A->cmap->n, j; 14843a40ed3dSBarry Smith 14853a40ed3dSBarry Smith PetscFunctionBegin; 148633f4a19fSKris Buschelman /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 148733f4a19fSKris Buschelman if (A->ops->copy != B->ops->copy) { 1488cb5b572fSBarry Smith ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 14893a40ed3dSBarry Smith PetscFunctionReturn(0); 14903a40ed3dSBarry Smith } 1491d0f46423SBarry Smith if (m != B->rmap->n || n != B->cmap->n) SETERRQ(PETSC_ERR_ARG_SIZ,"size(B) != size(A)"); 1492a5ce6ee0Svictorle if (lda1>m || lda2>m) { 14930dbb7854Svictorle for (j=0; j<n; j++) { 1494a5ce6ee0Svictorle ierr = PetscMemcpy(b->v+j*lda2,a->v+j*lda1,m*sizeof(PetscScalar));CHKERRQ(ierr); 1495a5ce6ee0Svictorle } 1496a5ce6ee0Svictorle } else { 1497d0f46423SBarry Smith ierr = PetscMemcpy(b->v,a->v,A->rmap->n*A->cmap->n*sizeof(PetscScalar));CHKERRQ(ierr); 1498a5ce6ee0Svictorle } 1499273d9f13SBarry Smith PetscFunctionReturn(0); 1500273d9f13SBarry Smith } 1501273d9f13SBarry Smith 15024a2ae208SSatish Balay #undef __FUNCT__ 15034a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_SeqDense" 1504dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_SeqDense(Mat A) 1505273d9f13SBarry Smith { 1506dfbe8321SBarry Smith PetscErrorCode ierr; 1507273d9f13SBarry Smith 1508273d9f13SBarry Smith PetscFunctionBegin; 1509273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(A,0);CHKERRQ(ierr); 15103a40ed3dSBarry Smith PetscFunctionReturn(0); 15114b0e389bSBarry Smith } 15124b0e389bSBarry Smith 1513284134d9SBarry Smith #undef __FUNCT__ 1514284134d9SBarry Smith #define __FUNCT__ "MatSetSizes_SeqDense" 1515284134d9SBarry Smith PetscErrorCode MatSetSizes_SeqDense(Mat A,PetscInt m,PetscInt n,PetscInt M,PetscInt N) 1516284134d9SBarry Smith { 1517284134d9SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1518284134d9SBarry Smith PetscFunctionBegin; 151921a2c019SBarry Smith /* this will not be called before lda, Mmax, and Nmax have been set */ 1520284134d9SBarry Smith m = PetscMax(m,M); 1521284134d9SBarry Smith n = PetscMax(n,N); 152221a2c019SBarry Smith if (m > a->Mmax) SETERRQ2(PETSC_ERR_SUP,"Cannot yet resize number rows of dense matrix larger then its initial size %d, requested %d",a->lda,(int)m); 1523284134d9SBarry Smith if (n > a->Nmax) SETERRQ2(PETSC_ERR_SUP,"Cannot yet resize number columns of dense matrix larger then its initial size %d, requested %d",a->Nmax,(int)n); 1524dc5cefdeSJed Brown A->rmap->n = A->rmap->N = m; 1525d0f46423SBarry Smith A->cmap->n = A->cmap->N = n; 152621a2c019SBarry Smith if (a->changelda) a->lda = m; 1527284134d9SBarry Smith PetscFunctionReturn(0); 1528284134d9SBarry Smith } 1529170fe5c8SBarry Smith 1530ba337c44SJed Brown #undef __FUNCT__ 1531ba337c44SJed Brown #define __FUNCT__ "MatConjugate_SeqDense" 1532ba337c44SJed Brown static PetscErrorCode MatConjugate_SeqDense(Mat A) 1533ba337c44SJed Brown { 1534ba337c44SJed Brown Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1535ba337c44SJed Brown PetscInt i,nz = A->rmap->n*A->cmap->n; 1536ba337c44SJed Brown PetscScalar *aa = a->v; 1537ba337c44SJed Brown 1538ba337c44SJed Brown PetscFunctionBegin; 1539ba337c44SJed Brown for (i=0; i<nz; i++) aa[i] = PetscConj(aa[i]); 1540ba337c44SJed Brown PetscFunctionReturn(0); 1541ba337c44SJed Brown } 1542ba337c44SJed Brown 1543ba337c44SJed Brown #undef __FUNCT__ 1544ba337c44SJed Brown #define __FUNCT__ "MatRealPart_SeqDense" 1545ba337c44SJed Brown static PetscErrorCode MatRealPart_SeqDense(Mat A) 1546ba337c44SJed Brown { 1547ba337c44SJed Brown Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1548ba337c44SJed Brown PetscInt i,nz = A->rmap->n*A->cmap->n; 1549ba337c44SJed Brown PetscScalar *aa = a->v; 1550ba337c44SJed Brown 1551ba337c44SJed Brown PetscFunctionBegin; 1552ba337c44SJed Brown for (i=0; i<nz; i++) aa[i] = PetscRealPart(aa[i]); 1553ba337c44SJed Brown PetscFunctionReturn(0); 1554ba337c44SJed Brown } 1555ba337c44SJed Brown 1556ba337c44SJed Brown #undef __FUNCT__ 1557ba337c44SJed Brown #define __FUNCT__ "MatImaginaryPart_SeqDense" 1558ba337c44SJed Brown static PetscErrorCode MatImaginaryPart_SeqDense(Mat A) 1559ba337c44SJed Brown { 1560ba337c44SJed Brown Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1561ba337c44SJed Brown PetscInt i,nz = A->rmap->n*A->cmap->n; 1562ba337c44SJed Brown PetscScalar *aa = a->v; 1563ba337c44SJed Brown 1564ba337c44SJed Brown PetscFunctionBegin; 1565ba337c44SJed Brown for (i=0; i<nz; i++) aa[i] = PetscImaginaryPart(aa[i]); 1566ba337c44SJed Brown PetscFunctionReturn(0); 1567ba337c44SJed Brown } 1568284134d9SBarry Smith 1569a9fe9ddaSSatish Balay /* ----------------------------------------------------------------*/ 1570a9fe9ddaSSatish Balay #undef __FUNCT__ 1571a9fe9ddaSSatish Balay #define __FUNCT__ "MatMatMult_SeqDense_SeqDense" 1572a9fe9ddaSSatish Balay PetscErrorCode MatMatMult_SeqDense_SeqDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 1573a9fe9ddaSSatish Balay { 1574a9fe9ddaSSatish Balay PetscErrorCode ierr; 1575a9fe9ddaSSatish Balay 1576a9fe9ddaSSatish Balay PetscFunctionBegin; 1577a9fe9ddaSSatish Balay if (scall == MAT_INITIAL_MATRIX){ 1578a9fe9ddaSSatish Balay ierr = MatMatMultSymbolic_SeqDense_SeqDense(A,B,fill,C);CHKERRQ(ierr); 1579a9fe9ddaSSatish Balay } 1580a9fe9ddaSSatish Balay ierr = MatMatMultNumeric_SeqDense_SeqDense(A,B,*C);CHKERRQ(ierr); 1581a9fe9ddaSSatish Balay PetscFunctionReturn(0); 1582a9fe9ddaSSatish Balay } 1583a9fe9ddaSSatish Balay 1584a9fe9ddaSSatish Balay #undef __FUNCT__ 1585a9fe9ddaSSatish Balay #define __FUNCT__ "MatMatMultSymbolic_SeqDense_SeqDense" 1586a9fe9ddaSSatish Balay PetscErrorCode MatMatMultSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat *C) 1587a9fe9ddaSSatish Balay { 1588ee16a9a1SHong Zhang PetscErrorCode ierr; 1589d0f46423SBarry Smith PetscInt m=A->rmap->n,n=B->cmap->n; 1590ee16a9a1SHong Zhang Mat Cmat; 1591a9fe9ddaSSatish Balay 1592ee16a9a1SHong Zhang PetscFunctionBegin; 1593d0f46423SBarry Smith if (A->cmap->n != B->rmap->n) SETERRQ2(PETSC_ERR_ARG_SIZ,"A->cmap->n %d != B->rmap->n %d\n",A->cmap->n,B->rmap->n); 1594ee16a9a1SHong Zhang ierr = MatCreate(PETSC_COMM_SELF,&Cmat);CHKERRQ(ierr); 1595ee16a9a1SHong Zhang ierr = MatSetSizes(Cmat,m,n,m,n);CHKERRQ(ierr); 1596ee16a9a1SHong Zhang ierr = MatSetType(Cmat,MATSEQDENSE);CHKERRQ(ierr); 1597ee16a9a1SHong Zhang ierr = MatSeqDenseSetPreallocation(Cmat,PETSC_NULL);CHKERRQ(ierr); 1598ee16a9a1SHong Zhang Cmat->assembled = PETSC_TRUE; 1599ee16a9a1SHong Zhang *C = Cmat; 1600ee16a9a1SHong Zhang PetscFunctionReturn(0); 1601ee16a9a1SHong Zhang } 1602a9fe9ddaSSatish Balay 160398a3b096SSatish Balay #undef __FUNCT__ 1604a9fe9ddaSSatish Balay #define __FUNCT__ "MatMatMultNumeric_SeqDense_SeqDense" 1605a9fe9ddaSSatish Balay PetscErrorCode MatMatMultNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C) 1606a9fe9ddaSSatish Balay { 1607a9fe9ddaSSatish Balay Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1608a9fe9ddaSSatish Balay Mat_SeqDense *b = (Mat_SeqDense*)B->data; 1609a9fe9ddaSSatish Balay Mat_SeqDense *c = (Mat_SeqDense*)C->data; 16100805154bSBarry Smith PetscBLASInt m,n,k; 1611a9fe9ddaSSatish Balay PetscScalar _DOne=1.0,_DZero=0.0; 1612a9fe9ddaSSatish Balay 1613a9fe9ddaSSatish Balay PetscFunctionBegin; 1614d0f46423SBarry Smith m = PetscBLASIntCast(A->rmap->n); 1615d0f46423SBarry Smith n = PetscBLASIntCast(B->cmap->n); 1616d0f46423SBarry Smith k = PetscBLASIntCast(A->cmap->n); 1617a9fe9ddaSSatish Balay BLASgemm_("N","N",&m,&n,&k,&_DOne,a->v,&a->lda,b->v,&b->lda,&_DZero,c->v,&c->lda); 1618a9fe9ddaSSatish Balay PetscFunctionReturn(0); 1619a9fe9ddaSSatish Balay } 1620a9fe9ddaSSatish Balay 1621a9fe9ddaSSatish Balay #undef __FUNCT__ 1622a9fe9ddaSSatish Balay #define __FUNCT__ "MatMatMultTranspose_SeqDense_SeqDense" 1623a9fe9ddaSSatish Balay PetscErrorCode MatMatMultTranspose_SeqDense_SeqDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 1624a9fe9ddaSSatish Balay { 1625a9fe9ddaSSatish Balay PetscErrorCode ierr; 1626a9fe9ddaSSatish Balay 1627a9fe9ddaSSatish Balay PetscFunctionBegin; 1628a9fe9ddaSSatish Balay if (scall == MAT_INITIAL_MATRIX){ 1629a9fe9ddaSSatish Balay ierr = MatMatMultTransposeSymbolic_SeqDense_SeqDense(A,B,fill,C);CHKERRQ(ierr); 1630a9fe9ddaSSatish Balay } 1631a9fe9ddaSSatish Balay ierr = MatMatMultTransposeNumeric_SeqDense_SeqDense(A,B,*C);CHKERRQ(ierr); 1632a9fe9ddaSSatish Balay PetscFunctionReturn(0); 1633a9fe9ddaSSatish Balay } 1634a9fe9ddaSSatish Balay 1635a9fe9ddaSSatish Balay #undef __FUNCT__ 1636a9fe9ddaSSatish Balay #define __FUNCT__ "MatMatMultTransposeSymbolic_SeqDense_SeqDense" 1637a9fe9ddaSSatish Balay PetscErrorCode MatMatMultTransposeSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat *C) 1638a9fe9ddaSSatish Balay { 1639ee16a9a1SHong Zhang PetscErrorCode ierr; 1640d0f46423SBarry Smith PetscInt m=A->cmap->n,n=B->cmap->n; 1641ee16a9a1SHong Zhang Mat Cmat; 1642a9fe9ddaSSatish Balay 1643ee16a9a1SHong Zhang PetscFunctionBegin; 1644d0f46423SBarry Smith if (A->rmap->n != B->rmap->n) SETERRQ2(PETSC_ERR_ARG_SIZ,"A->rmap->n %d != B->rmap->n %d\n",A->rmap->n,B->rmap->n); 1645ee16a9a1SHong Zhang ierr = MatCreate(PETSC_COMM_SELF,&Cmat);CHKERRQ(ierr); 1646ee16a9a1SHong Zhang ierr = MatSetSizes(Cmat,m,n,m,n);CHKERRQ(ierr); 1647ee16a9a1SHong Zhang ierr = MatSetType(Cmat,MATSEQDENSE);CHKERRQ(ierr); 1648ee16a9a1SHong Zhang ierr = MatSeqDenseSetPreallocation(Cmat,PETSC_NULL);CHKERRQ(ierr); 1649ee16a9a1SHong Zhang Cmat->assembled = PETSC_TRUE; 1650ee16a9a1SHong Zhang *C = Cmat; 1651ee16a9a1SHong Zhang PetscFunctionReturn(0); 1652ee16a9a1SHong Zhang } 1653a9fe9ddaSSatish Balay 1654a9fe9ddaSSatish Balay #undef __FUNCT__ 1655a9fe9ddaSSatish Balay #define __FUNCT__ "MatMatMultTransposeNumeric_SeqDense_SeqDense" 1656a9fe9ddaSSatish Balay PetscErrorCode MatMatMultTransposeNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C) 1657a9fe9ddaSSatish Balay { 1658a9fe9ddaSSatish Balay Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1659a9fe9ddaSSatish Balay Mat_SeqDense *b = (Mat_SeqDense*)B->data; 1660a9fe9ddaSSatish Balay Mat_SeqDense *c = (Mat_SeqDense*)C->data; 16610805154bSBarry Smith PetscBLASInt m,n,k; 1662a9fe9ddaSSatish Balay PetscScalar _DOne=1.0,_DZero=0.0; 1663a9fe9ddaSSatish Balay 1664a9fe9ddaSSatish Balay PetscFunctionBegin; 1665d0f46423SBarry Smith m = PetscBLASIntCast(A->cmap->n); 1666d0f46423SBarry Smith n = PetscBLASIntCast(B->cmap->n); 1667d0f46423SBarry Smith k = PetscBLASIntCast(A->rmap->n); 16682fbe02b9SBarry Smith /* 16692fbe02b9SBarry Smith Note the m and n arguments below are the number rows and columns of A', not A! 16702fbe02b9SBarry Smith */ 1671a9fe9ddaSSatish Balay BLASgemm_("T","N",&m,&n,&k,&_DOne,a->v,&a->lda,b->v,&b->lda,&_DZero,c->v,&c->lda); 1672a9fe9ddaSSatish Balay PetscFunctionReturn(0); 1673a9fe9ddaSSatish Balay } 1674985db425SBarry Smith 1675985db425SBarry Smith #undef __FUNCT__ 1676985db425SBarry Smith #define __FUNCT__ "MatGetRowMax_SeqDense" 1677985db425SBarry Smith PetscErrorCode MatGetRowMax_SeqDense(Mat A,Vec v,PetscInt idx[]) 1678985db425SBarry Smith { 1679985db425SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1680985db425SBarry Smith PetscErrorCode ierr; 1681d0f46423SBarry Smith PetscInt i,j,m = A->rmap->n,n = A->cmap->n,p; 1682985db425SBarry Smith PetscScalar *x; 1683985db425SBarry Smith MatScalar *aa = a->v; 1684985db425SBarry Smith 1685985db425SBarry Smith PetscFunctionBegin; 1686d5f3da31SBarry Smith if (A->factortype) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 1687985db425SBarry Smith 1688985db425SBarry Smith ierr = VecSet(v,0.0);CHKERRQ(ierr); 1689985db425SBarry Smith ierr = VecGetArray(v,&x);CHKERRQ(ierr); 1690985db425SBarry Smith ierr = VecGetLocalSize(v,&p);CHKERRQ(ierr); 1691d0f46423SBarry Smith if (p != A->rmap->n) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector"); 1692985db425SBarry Smith for (i=0; i<m; i++) { 1693985db425SBarry Smith x[i] = aa[i]; if (idx) idx[i] = 0; 1694985db425SBarry Smith for (j=1; j<n; j++){ 1695985db425SBarry Smith if (PetscRealPart(x[i]) < PetscRealPart(aa[i+m*j])) {x[i] = aa[i + m*j]; if (idx) idx[i] = j;} 1696985db425SBarry Smith } 1697985db425SBarry Smith } 1698985db425SBarry Smith ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 1699985db425SBarry Smith PetscFunctionReturn(0); 1700985db425SBarry Smith } 1701985db425SBarry Smith 1702985db425SBarry Smith #undef __FUNCT__ 1703985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_SeqDense" 1704985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_SeqDense(Mat A,Vec v,PetscInt idx[]) 1705985db425SBarry Smith { 1706985db425SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1707985db425SBarry Smith PetscErrorCode ierr; 1708d0f46423SBarry Smith PetscInt i,j,m = A->rmap->n,n = A->cmap->n,p; 1709985db425SBarry Smith PetscScalar *x; 1710985db425SBarry Smith PetscReal atmp; 1711985db425SBarry Smith MatScalar *aa = a->v; 1712985db425SBarry Smith 1713985db425SBarry Smith PetscFunctionBegin; 1714d5f3da31SBarry Smith if (A->factortype) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 1715985db425SBarry Smith 1716985db425SBarry Smith ierr = VecSet(v,0.0);CHKERRQ(ierr); 1717985db425SBarry Smith ierr = VecGetArray(v,&x);CHKERRQ(ierr); 1718985db425SBarry Smith ierr = VecGetLocalSize(v,&p);CHKERRQ(ierr); 1719d0f46423SBarry Smith if (p != A->rmap->n) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector"); 1720985db425SBarry Smith for (i=0; i<m; i++) { 17219189402eSHong Zhang x[i] = PetscAbsScalar(aa[i]); 1722985db425SBarry Smith for (j=1; j<n; j++){ 1723985db425SBarry Smith atmp = PetscAbsScalar(aa[i+m*j]); 1724985db425SBarry Smith if (PetscAbsScalar(x[i]) < atmp) {x[i] = atmp; if (idx) idx[i] = j;} 1725985db425SBarry Smith } 1726985db425SBarry Smith } 1727985db425SBarry Smith ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 1728985db425SBarry Smith PetscFunctionReturn(0); 1729985db425SBarry Smith } 1730985db425SBarry Smith 1731985db425SBarry Smith #undef __FUNCT__ 1732985db425SBarry Smith #define __FUNCT__ "MatGetRowMin_SeqDense" 1733985db425SBarry Smith PetscErrorCode MatGetRowMin_SeqDense(Mat A,Vec v,PetscInt idx[]) 1734985db425SBarry Smith { 1735985db425SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1736985db425SBarry Smith PetscErrorCode ierr; 1737d0f46423SBarry Smith PetscInt i,j,m = A->rmap->n,n = A->cmap->n,p; 1738985db425SBarry Smith PetscScalar *x; 1739985db425SBarry Smith MatScalar *aa = a->v; 1740985db425SBarry Smith 1741985db425SBarry Smith PetscFunctionBegin; 1742d5f3da31SBarry Smith if (A->factortype) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 1743985db425SBarry Smith 1744985db425SBarry Smith ierr = VecSet(v,0.0);CHKERRQ(ierr); 1745985db425SBarry Smith ierr = VecGetArray(v,&x);CHKERRQ(ierr); 1746985db425SBarry Smith ierr = VecGetLocalSize(v,&p);CHKERRQ(ierr); 1747d0f46423SBarry Smith if (p != A->rmap->n) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector"); 1748985db425SBarry Smith for (i=0; i<m; i++) { 1749985db425SBarry Smith x[i] = aa[i]; if (idx) idx[i] = 0; 1750985db425SBarry Smith for (j=1; j<n; j++){ 1751985db425SBarry Smith if (PetscRealPart(x[i]) > PetscRealPart(aa[i+m*j])) {x[i] = aa[i + m*j]; if (idx) idx[i] = j;} 1752985db425SBarry Smith } 1753985db425SBarry Smith } 1754985db425SBarry Smith ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 1755985db425SBarry Smith PetscFunctionReturn(0); 1756985db425SBarry Smith } 1757985db425SBarry Smith 17588d0534beSBarry Smith #undef __FUNCT__ 17598d0534beSBarry Smith #define __FUNCT__ "MatGetColumnVector_SeqDense" 17608d0534beSBarry Smith PetscErrorCode MatGetColumnVector_SeqDense(Mat A,Vec v,PetscInt col) 17618d0534beSBarry Smith { 17628d0534beSBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 17638d0534beSBarry Smith PetscErrorCode ierr; 17648d0534beSBarry Smith PetscScalar *x; 17658d0534beSBarry Smith 17668d0534beSBarry Smith PetscFunctionBegin; 1767d5f3da31SBarry Smith if (A->factortype) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 17688d0534beSBarry Smith 17698d0534beSBarry Smith ierr = VecGetArray(v,&x);CHKERRQ(ierr); 1770d0f46423SBarry Smith ierr = PetscMemcpy(x,a->v+col*a->lda,A->rmap->n*sizeof(PetscScalar));CHKERRQ(ierr); 17718d0534beSBarry Smith ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 17728d0534beSBarry Smith PetscFunctionReturn(0); 17738d0534beSBarry Smith } 17748d0534beSBarry Smith 1775289bc588SBarry Smith /* -------------------------------------------------------------------*/ 1776a5ae1ecdSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_SeqDense, 1777905e6a2fSBarry Smith MatGetRow_SeqDense, 1778905e6a2fSBarry Smith MatRestoreRow_SeqDense, 1779905e6a2fSBarry Smith MatMult_SeqDense, 178097304618SKris Buschelman /* 4*/ MatMultAdd_SeqDense, 17817c922b88SBarry Smith MatMultTranspose_SeqDense, 17827c922b88SBarry Smith MatMultTransposeAdd_SeqDense, 1783db4efbfdSBarry Smith 0, 1784db4efbfdSBarry Smith 0, 1785db4efbfdSBarry Smith 0, 1786db4efbfdSBarry Smith /*10*/ 0, 1787905e6a2fSBarry Smith MatLUFactor_SeqDense, 1788905e6a2fSBarry Smith MatCholeskyFactor_SeqDense, 178941f059aeSBarry Smith MatSOR_SeqDense, 1790ec8511deSBarry Smith MatTranspose_SeqDense, 179197304618SKris Buschelman /*15*/ MatGetInfo_SeqDense, 1792905e6a2fSBarry Smith MatEqual_SeqDense, 1793905e6a2fSBarry Smith MatGetDiagonal_SeqDense, 1794905e6a2fSBarry Smith MatDiagonalScale_SeqDense, 1795905e6a2fSBarry Smith MatNorm_SeqDense, 1796c0aa2d19SHong Zhang /*20*/ MatAssemblyBegin_SeqDense, 1797c0aa2d19SHong Zhang MatAssemblyEnd_SeqDense, 1798905e6a2fSBarry Smith MatSetOption_SeqDense, 1799905e6a2fSBarry Smith MatZeroEntries_SeqDense, 1800d519adbfSMatthew Knepley /*24*/ MatZeroRows_SeqDense, 1801db4efbfdSBarry Smith 0, 1802db4efbfdSBarry Smith 0, 1803db4efbfdSBarry Smith 0, 1804db4efbfdSBarry Smith 0, 1805d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_SeqDense, 1806273d9f13SBarry Smith 0, 1807905e6a2fSBarry Smith 0, 1808905e6a2fSBarry Smith MatGetArray_SeqDense, 1809905e6a2fSBarry Smith MatRestoreArray_SeqDense, 1810d519adbfSMatthew Knepley /*34*/ MatDuplicate_SeqDense, 1811a5ae1ecdSBarry Smith 0, 1812a5ae1ecdSBarry Smith 0, 1813a5ae1ecdSBarry Smith 0, 1814a5ae1ecdSBarry Smith 0, 1815d519adbfSMatthew Knepley /*39*/ MatAXPY_SeqDense, 1816a5ae1ecdSBarry Smith MatGetSubMatrices_SeqDense, 1817a5ae1ecdSBarry Smith 0, 18184b0e389bSBarry Smith MatGetValues_SeqDense, 1819a5ae1ecdSBarry Smith MatCopy_SeqDense, 1820d519adbfSMatthew Knepley /*44*/ MatGetRowMax_SeqDense, 1821a5ae1ecdSBarry Smith MatScale_SeqDense, 1822a5ae1ecdSBarry Smith 0, 1823a5ae1ecdSBarry Smith 0, 1824a5ae1ecdSBarry Smith 0, 1825d519adbfSMatthew Knepley /*49*/ 0, 1826a5ae1ecdSBarry Smith 0, 1827a5ae1ecdSBarry Smith 0, 1828a5ae1ecdSBarry Smith 0, 1829a5ae1ecdSBarry Smith 0, 1830d519adbfSMatthew Knepley /*54*/ 0, 1831a5ae1ecdSBarry Smith 0, 1832a5ae1ecdSBarry Smith 0, 1833a5ae1ecdSBarry Smith 0, 1834a5ae1ecdSBarry Smith 0, 1835d519adbfSMatthew Knepley /*59*/ 0, 1836e03a110bSBarry Smith MatDestroy_SeqDense, 1837e03a110bSBarry Smith MatView_SeqDense, 1838357abbc8SBarry Smith 0, 183997304618SKris Buschelman 0, 1840d519adbfSMatthew Knepley /*64*/ 0, 184197304618SKris Buschelman 0, 184297304618SKris Buschelman 0, 184397304618SKris Buschelman 0, 184497304618SKris Buschelman 0, 1845d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_SeqDense, 184697304618SKris Buschelman 0, 184797304618SKris Buschelman 0, 184897304618SKris Buschelman 0, 184997304618SKris Buschelman 0, 1850d519adbfSMatthew Knepley /*74*/ 0, 185197304618SKris Buschelman 0, 185297304618SKris Buschelman 0, 185397304618SKris Buschelman 0, 185497304618SKris Buschelman 0, 1855d519adbfSMatthew Knepley /*79*/ 0, 185697304618SKris Buschelman 0, 185797304618SKris Buschelman 0, 185897304618SKris Buschelman 0, 1859d519adbfSMatthew Knepley /*83*/ MatLoad_SeqDense, 1860865e5f61SKris Buschelman 0, 18611cbb95d3SBarry Smith MatIsHermitian_SeqDense, 1862865e5f61SKris Buschelman 0, 1863865e5f61SKris Buschelman 0, 1864865e5f61SKris Buschelman 0, 1865d519adbfSMatthew Knepley /*89*/ MatMatMult_SeqDense_SeqDense, 1866a9fe9ddaSSatish Balay MatMatMultSymbolic_SeqDense_SeqDense, 1867a9fe9ddaSSatish Balay MatMatMultNumeric_SeqDense_SeqDense, 1868865e5f61SKris Buschelman 0, 1869865e5f61SKris Buschelman 0, 1870d519adbfSMatthew Knepley /*94*/ 0, 1871a9fe9ddaSSatish Balay MatMatMultTranspose_SeqDense_SeqDense, 1872a9fe9ddaSSatish Balay MatMatMultTransposeSymbolic_SeqDense_SeqDense, 1873a9fe9ddaSSatish Balay MatMatMultTransposeNumeric_SeqDense_SeqDense, 1874284134d9SBarry Smith 0, 1875d519adbfSMatthew Knepley /*99*/ 0, 1876284134d9SBarry Smith 0, 1877284134d9SBarry Smith 0, 1878ba337c44SJed Brown MatConjugate_SeqDense, 1879985db425SBarry Smith MatSetSizes_SeqDense, 1880ba337c44SJed Brown /*104*/0, 1881ba337c44SJed Brown MatRealPart_SeqDense, 1882ba337c44SJed Brown MatImaginaryPart_SeqDense, 1883985db425SBarry Smith 0, 1884985db425SBarry Smith 0, 1885d519adbfSMatthew Knepley /*109*/0, 1886985db425SBarry Smith 0, 18878d0534beSBarry Smith MatGetRowMin_SeqDense, 18888d0534beSBarry Smith MatGetColumnVector_SeqDense 1889985db425SBarry Smith }; 189090ace30eSBarry Smith 18914a2ae208SSatish Balay #undef __FUNCT__ 18924a2ae208SSatish Balay #define __FUNCT__ "MatCreateSeqDense" 18934b828684SBarry Smith /*@C 1894fafbff53SBarry Smith MatCreateSeqDense - Creates a sequential dense matrix that 1895d65003e9SLois Curfman McInnes is stored in column major order (the usual Fortran 77 manner). Many 1896d65003e9SLois Curfman McInnes of the matrix operations use the BLAS and LAPACK routines. 1897289bc588SBarry Smith 1898db81eaa0SLois Curfman McInnes Collective on MPI_Comm 1899db81eaa0SLois Curfman McInnes 190020563c6bSBarry Smith Input Parameters: 1901db81eaa0SLois Curfman McInnes + comm - MPI communicator, set to PETSC_COMM_SELF 19020c775827SLois Curfman McInnes . m - number of rows 190318f449edSLois Curfman McInnes . n - number of columns 1904c0235b3cSMatthew Knepley - data - optional location of matrix data in column major order. Set data=PETSC_NULL for PETSc 1905dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 190620563c6bSBarry Smith 190720563c6bSBarry Smith Output Parameter: 190844cd7ae7SLois Curfman McInnes . A - the matrix 190920563c6bSBarry Smith 1910b259b22eSLois Curfman McInnes Notes: 191118f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 191218f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 1913b4fd4287SBarry Smith set data=PETSC_NULL. 191418f449edSLois Curfman McInnes 1915027ccd11SLois Curfman McInnes Level: intermediate 1916027ccd11SLois Curfman McInnes 1917dbd7a890SLois Curfman McInnes .keywords: dense, matrix, LAPACK, BLAS 1918d65003e9SLois Curfman McInnes 1919db81eaa0SLois Curfman McInnes .seealso: MatCreate(), MatCreateMPIDense(), MatSetValues() 192020563c6bSBarry Smith @*/ 1921be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscScalar *data,Mat *A) 1922289bc588SBarry Smith { 1923dfbe8321SBarry Smith PetscErrorCode ierr; 19243b2fbd54SBarry Smith 19253a40ed3dSBarry Smith PetscFunctionBegin; 1926f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 1927f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr); 1928273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 1929273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 1930273d9f13SBarry Smith PetscFunctionReturn(0); 1931273d9f13SBarry Smith } 1932273d9f13SBarry Smith 19334a2ae208SSatish Balay #undef __FUNCT__ 1934afc30d2aSLisandro Dalcin #define __FUNCT__ "MatSeqDenseSetPreallocation" 1935273d9f13SBarry Smith /*@C 1936273d9f13SBarry Smith MatSeqDenseSetPreallocation - Sets the array used for storing the matrix elements 1937273d9f13SBarry Smith 1938273d9f13SBarry Smith Collective on MPI_Comm 1939273d9f13SBarry Smith 1940273d9f13SBarry Smith Input Parameters: 1941273d9f13SBarry Smith + A - the matrix 1942273d9f13SBarry Smith - data - the array (or PETSC_NULL) 1943273d9f13SBarry Smith 1944273d9f13SBarry Smith Notes: 1945273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1946273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 1947284134d9SBarry Smith need not call this routine. 1948273d9f13SBarry Smith 1949273d9f13SBarry Smith Level: intermediate 1950273d9f13SBarry Smith 1951273d9f13SBarry Smith .keywords: dense, matrix, LAPACK, BLAS 1952273d9f13SBarry Smith 1953867c911aSBarry Smith .seealso: MatCreate(), MatCreateMPIDense(), MatSetValues(), MatSeqDenseSetLDA() 1954867c911aSBarry Smith 1955273d9f13SBarry Smith @*/ 1956be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqDenseSetPreallocation(Mat B,PetscScalar data[]) 1957273d9f13SBarry Smith { 1958dfbe8321SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscScalar[]); 1959a23d5eceSKris Buschelman 1960a23d5eceSKris Buschelman PetscFunctionBegin; 1961a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatSeqDenseSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1962a23d5eceSKris Buschelman if (f) { 1963a23d5eceSKris Buschelman ierr = (*f)(B,data);CHKERRQ(ierr); 1964a23d5eceSKris Buschelman } 1965a23d5eceSKris Buschelman PetscFunctionReturn(0); 1966a23d5eceSKris Buschelman } 1967a23d5eceSKris Buschelman 1968a23d5eceSKris Buschelman EXTERN_C_BEGIN 1969a23d5eceSKris Buschelman #undef __FUNCT__ 1970afc30d2aSLisandro Dalcin #define __FUNCT__ "MatSeqDenseSetPreallocation_SeqDense" 1971be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqDenseSetPreallocation_SeqDense(Mat B,PetscScalar *data) 1972a23d5eceSKris Buschelman { 1973273d9f13SBarry Smith Mat_SeqDense *b; 1974dfbe8321SBarry Smith PetscErrorCode ierr; 1975273d9f13SBarry Smith 1976273d9f13SBarry Smith PetscFunctionBegin; 1977273d9f13SBarry Smith B->preallocated = PETSC_TRUE; 1978273d9f13SBarry Smith b = (Mat_SeqDense*)B->data; 1979d0f46423SBarry Smith if (b->lda <= 0) b->lda = B->rmap->n; 19809e8f95c4SLisandro Dalcin if (!data) { /* petsc-allocated storage */ 19819e8f95c4SLisandro Dalcin if (!b->user_alloc) { ierr = PetscFree(b->v);CHKERRQ(ierr); } 19825afd5e0cSBarry Smith ierr = PetscMalloc(b->lda*b->Nmax*sizeof(PetscScalar),&b->v);CHKERRQ(ierr); 1983284134d9SBarry Smith ierr = PetscMemzero(b->v,b->lda*b->Nmax*sizeof(PetscScalar));CHKERRQ(ierr); 1984284134d9SBarry Smith ierr = PetscLogObjectMemory(B,b->lda*b->Nmax*sizeof(PetscScalar));CHKERRQ(ierr); 19859e8f95c4SLisandro Dalcin b->user_alloc = PETSC_FALSE; 1986273d9f13SBarry Smith } else { /* user-allocated storage */ 19879e8f95c4SLisandro Dalcin if (!b->user_alloc) { ierr = PetscFree(b->v);CHKERRQ(ierr); } 1988273d9f13SBarry Smith b->v = data; 1989273d9f13SBarry Smith b->user_alloc = PETSC_TRUE; 1990273d9f13SBarry Smith } 19910450473dSBarry Smith B->assembled = PETSC_TRUE; 1992273d9f13SBarry Smith PetscFunctionReturn(0); 1993273d9f13SBarry Smith } 1994a23d5eceSKris Buschelman EXTERN_C_END 1995273d9f13SBarry Smith 19961b807ce4Svictorle #undef __FUNCT__ 19971b807ce4Svictorle #define __FUNCT__ "MatSeqDenseSetLDA" 19981b807ce4Svictorle /*@C 19991b807ce4Svictorle MatSeqDenseSetLDA - Declare the leading dimension of the user-provided array 20001b807ce4Svictorle 20011b807ce4Svictorle Input parameter: 20021b807ce4Svictorle + A - the matrix 20031b807ce4Svictorle - lda - the leading dimension 20041b807ce4Svictorle 20051b807ce4Svictorle Notes: 2006867c911aSBarry Smith This routine is to be used in conjunction with MatSeqDenseSetPreallocation(); 20071b807ce4Svictorle it asserts that the preallocation has a leading dimension (the LDA parameter 20081b807ce4Svictorle of Blas and Lapack fame) larger than M, the first dimension of the matrix. 20091b807ce4Svictorle 20101b807ce4Svictorle Level: intermediate 20111b807ce4Svictorle 20121b807ce4Svictorle .keywords: dense, matrix, LAPACK, BLAS 20131b807ce4Svictorle 2014284134d9SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSeqDenseSetPreallocation(), MatSetMaximumSize() 2015867c911aSBarry Smith 20161b807ce4Svictorle @*/ 2017be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqDenseSetLDA(Mat B,PetscInt lda) 20181b807ce4Svictorle { 20191b807ce4Svictorle Mat_SeqDense *b = (Mat_SeqDense*)B->data; 202021a2c019SBarry Smith 20211b807ce4Svictorle PetscFunctionBegin; 2022d0f46423SBarry Smith if (lda < B->rmap->n) SETERRQ2(PETSC_ERR_ARG_SIZ,"LDA %D must be at least matrix dimension %D",lda,B->rmap->n); 20231b807ce4Svictorle b->lda = lda; 202421a2c019SBarry Smith b->changelda = PETSC_FALSE; 202521a2c019SBarry Smith b->Mmax = PetscMax(b->Mmax,lda); 20261b807ce4Svictorle PetscFunctionReturn(0); 20271b807ce4Svictorle } 20281b807ce4Svictorle 20290bad9183SKris Buschelman /*MC 2030fafad747SKris Buschelman MATSEQDENSE - MATSEQDENSE = "seqdense" - A matrix type to be used for sequential dense matrices. 20310bad9183SKris Buschelman 20320bad9183SKris Buschelman Options Database Keys: 20330bad9183SKris Buschelman . -mat_type seqdense - sets the matrix type to "seqdense" during a call to MatSetFromOptions() 20340bad9183SKris Buschelman 20350bad9183SKris Buschelman Level: beginner 20360bad9183SKris Buschelman 203789665df3SBarry Smith .seealso: MatCreateSeqDense() 203889665df3SBarry Smith 20390bad9183SKris Buschelman M*/ 20400bad9183SKris Buschelman 2041273d9f13SBarry Smith EXTERN_C_BEGIN 20424a2ae208SSatish Balay #undef __FUNCT__ 20434a2ae208SSatish Balay #define __FUNCT__ "MatCreate_SeqDense" 2044be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SeqDense(Mat B) 2045273d9f13SBarry Smith { 2046273d9f13SBarry Smith Mat_SeqDense *b; 2047dfbe8321SBarry Smith PetscErrorCode ierr; 20487c334f02SBarry Smith PetscMPIInt size; 2049273d9f13SBarry Smith 2050273d9f13SBarry Smith PetscFunctionBegin; 20517adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&size);CHKERRQ(ierr); 205229bbc08cSBarry Smith if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"Comm must be of size 1"); 205355659b69SBarry Smith 205426283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,1);CHKERRQ(ierr); 205526283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,1);CHKERRQ(ierr); 205626283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 205726283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2058273d9f13SBarry Smith 205938f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_SeqDense,&b);CHKERRQ(ierr); 2060549d3d68SSatish Balay ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 206190f02eecSBarry Smith B->mapping = 0; 206244cd7ae7SLois Curfman McInnes B->data = (void*)b; 206318f449edSLois Curfman McInnes 2064a5ae1ecdSBarry Smith 206544cd7ae7SLois Curfman McInnes b->pivots = 0; 2066273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2067273d9f13SBarry Smith b->v = 0; 2068d0f46423SBarry Smith b->lda = B->rmap->n; 206921a2c019SBarry Smith b->changelda = PETSC_FALSE; 2070d0f46423SBarry Smith b->Mmax = B->rmap->n; 2071d0f46423SBarry Smith b->Nmax = B->cmap->n; 20724e220ebcSLois Curfman McInnes 2073b24902e0SBarry Smith 2074ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_petsc_C", 2075b24902e0SBarry Smith "MatGetFactor_seqdense_petsc", 2076b24902e0SBarry Smith MatGetFactor_seqdense_petsc);CHKERRQ(ierr); 2077a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqDenseSetPreallocation_C", 2078a23d5eceSKris Buschelman "MatSeqDenseSetPreallocation_SeqDense", 2079a23d5eceSKris Buschelman MatSeqDenseSetPreallocation_SeqDense);CHKERRQ(ierr); 20804ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMatMult_seqaij_seqdense_C", 20814ae313f4SHong Zhang "MatMatMult_SeqAIJ_SeqDense", 20824ae313f4SHong Zhang MatMatMult_SeqAIJ_SeqDense);CHKERRQ(ierr); 20834ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMatMultSymbolic_seqaij_seqdense_C", 20844ae313f4SHong Zhang "MatMatMultSymbolic_SeqAIJ_SeqDense", 20854ae313f4SHong Zhang MatMatMultSymbolic_SeqAIJ_SeqDense);CHKERRQ(ierr); 20864ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMatMultNumeric_seqaij_seqdense_C", 20874ae313f4SHong Zhang "MatMatMultNumeric_SeqAIJ_SeqDense", 20884ae313f4SHong Zhang MatMatMultNumeric_SeqAIJ_SeqDense);CHKERRQ(ierr); 208917667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQDENSE);CHKERRQ(ierr); 20903a40ed3dSBarry Smith PetscFunctionReturn(0); 2091289bc588SBarry Smith } 2092c0aa2d19SHong Zhang 2093c0aa2d19SHong Zhang 2094273d9f13SBarry Smith EXTERN_C_END 2095