xref: /petsc/src/mat/impls/dense/seq/dense.c (revision 5ac36cfc0e5eeebdd3eb653b01312f22e8e433fd)
1be1d678aSKris Buschelman 
267e560aaSBarry Smith /*
367e560aaSBarry Smith      Defines the basic matrix operations for sequential dense.
467e560aaSBarry Smith */
5289bc588SBarry Smith 
6dec5eb66SMatthew G Knepley #include <../src/mat/impls/dense/seq/dense.h> /*I "petscmat.h" I*/
7c6db04a5SJed Brown #include <petscblaslapack.h>
8289bc588SBarry Smith 
96a63e612SBarry Smith #include <../src/mat/impls/aij/seq/aij.h>
10b2573a8aSBarry Smith 
118c178816SStefano Zampini static PetscErrorCode MatSeqDenseSymmetrize_Private(Mat A, PetscBool hermitian)
128c178816SStefano Zampini {
138c178816SStefano Zampini   Mat_SeqDense *mat = (Mat_SeqDense*)A->data;
148c178816SStefano Zampini   PetscInt      j, k, n = A->rmap->n;
158c178816SStefano Zampini 
168c178816SStefano Zampini   PetscFunctionBegin;
178c178816SStefano Zampini   if (A->rmap->n != A->cmap->n) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Cannot symmetrize a rectangular matrix");
188c178816SStefano Zampini   if (!hermitian) {
198c178816SStefano Zampini     for (k=0;k<n;k++) {
208c178816SStefano Zampini       for (j=k;j<n;j++) {
218c178816SStefano Zampini         mat->v[j*mat->lda + k] = mat->v[k*mat->lda + j];
228c178816SStefano Zampini       }
238c178816SStefano Zampini     }
248c178816SStefano Zampini   } else {
258c178816SStefano Zampini     for (k=0;k<n;k++) {
268c178816SStefano Zampini       for (j=k;j<n;j++) {
278c178816SStefano Zampini         mat->v[j*mat->lda + k] = PetscConj(mat->v[k*mat->lda + j]);
288c178816SStefano Zampini       }
298c178816SStefano Zampini     }
308c178816SStefano Zampini   }
318c178816SStefano Zampini   PetscFunctionReturn(0);
328c178816SStefano Zampini }
338c178816SStefano Zampini 
3405709791SSatish Balay PETSC_EXTERN PetscErrorCode MatSeqDenseInvertFactors_Private(Mat A)
358c178816SStefano Zampini {
368c178816SStefano Zampini #if defined(PETSC_MISSING_LAPACK_POTRF)
378c178816SStefano Zampini   PetscFunctionBegin;
388c178816SStefano Zampini   SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"POTRF - Lapack routine is unavailable.");
398c178816SStefano Zampini #else
408c178816SStefano Zampini   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
418c178816SStefano Zampini   PetscErrorCode ierr;
428c178816SStefano Zampini   PetscBLASInt   info,n;
438c178816SStefano Zampini 
448c178816SStefano Zampini   PetscFunctionBegin;
458c178816SStefano Zampini   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
468c178816SStefano Zampini   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
478c178816SStefano Zampini   if (A->factortype == MAT_FACTOR_LU) {
488c178816SStefano Zampini     if (!mat->pivots) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Pivots not present");
498c178816SStefano Zampini     if (!mat->fwork) {
508c178816SStefano Zampini       mat->lfwork = n;
518c178816SStefano Zampini       ierr = PetscMalloc1(mat->lfwork,&mat->fwork);CHKERRQ(ierr);
528c178816SStefano Zampini       ierr = PetscLogObjectMemory((PetscObject)A,mat->lfwork*sizeof(PetscBLASInt));CHKERRQ(ierr);
538c178816SStefano Zampini     }
548c178816SStefano Zampini     PetscStackCallBLAS("LAPACKgetri",LAPACKgetri_(&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&mat->lfwork,&info));
558c178816SStefano Zampini     ierr = PetscLogFlops((1.0*A->cmap->n*A->cmap->n*A->cmap->n)/3.0);CHKERRQ(ierr); /* TODO CHECK FLOPS */
568c178816SStefano Zampini   } else if (A->factortype == MAT_FACTOR_CHOLESKY) {
578c178816SStefano Zampini     if (A->spd) {
588c178816SStefano Zampini       PetscStackCallBLAS("LAPACKpotri",LAPACKpotri_("L",&n,mat->v,&mat->lda,&info));
598c178816SStefano Zampini       ierr = MatSeqDenseSymmetrize_Private(A,PETSC_TRUE);CHKERRQ(ierr);
608c178816SStefano Zampini #if defined (PETSC_USE_COMPLEX)
618c178816SStefano Zampini     } else if (A->hermitian) {
628c178816SStefano Zampini       if (!mat->pivots) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Pivots not present");
638c178816SStefano Zampini       if (!mat->fwork) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Fwork not present");
648c178816SStefano Zampini       PetscStackCallBLAS("LAPACKhetri",LAPACKhetri_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&info));
658c178816SStefano Zampini       ierr = MatSeqDenseSymmetrize_Private(A,PETSC_TRUE);CHKERRQ(ierr);
668c178816SStefano Zampini #endif
678c178816SStefano Zampini     } else { /* symmetric case */
688c178816SStefano Zampini       if (!mat->pivots) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Pivots not present");
698c178816SStefano Zampini       if (!mat->fwork) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Fwork not present");
708c178816SStefano Zampini       PetscStackCallBLAS("LAPACKsytri",LAPACKsytri_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&info));
718c178816SStefano Zampini       ierr = MatSeqDenseSymmetrize_Private(A,PETSC_FALSE);CHKERRQ(ierr);
728c178816SStefano Zampini     }
738c178816SStefano Zampini     if (info) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_MAT_CH_ZRPVT,"Bad Inversion: zero pivot in row %D",(PetscInt)info-1);
748c178816SStefano Zampini     ierr = PetscLogFlops((1.0*A->cmap->n*A->cmap->n*A->cmap->n)/3.0);CHKERRQ(ierr); /* TODO CHECK FLOPS */
758c178816SStefano Zampini   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Matrix must be factored to solve");
768c178816SStefano Zampini #endif
778c178816SStefano Zampini 
788c178816SStefano Zampini   A->ops->solve             = NULL;
798c178816SStefano Zampini   A->ops->matsolve          = NULL;
808c178816SStefano Zampini   A->ops->solvetranspose    = NULL;
818c178816SStefano Zampini   A->ops->matsolvetranspose = NULL;
828c178816SStefano Zampini   A->ops->solveadd          = NULL;
838c178816SStefano Zampini   A->ops->solvetransposeadd = NULL;
848c178816SStefano Zampini   A->factortype             = MAT_FACTOR_NONE;
858c178816SStefano Zampini   ierr                      = PetscFree(A->solvertype);CHKERRQ(ierr);
868c178816SStefano Zampini   PetscFunctionReturn(0);
878c178816SStefano Zampini }
888c178816SStefano Zampini 
893f49a652SStefano Zampini PetscErrorCode MatZeroRowsColumns_SeqDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
903f49a652SStefano Zampini {
913f49a652SStefano Zampini   PetscErrorCode    ierr;
923f49a652SStefano Zampini   Mat_SeqDense      *l = (Mat_SeqDense*)A->data;
933f49a652SStefano Zampini   PetscInt          m  = l->lda, n = A->cmap->n,r = A->rmap->n, i,j;
943f49a652SStefano Zampini   PetscScalar       *slot,*bb;
953f49a652SStefano Zampini   const PetscScalar *xx;
963f49a652SStefano Zampini 
973f49a652SStefano Zampini   PetscFunctionBegin;
983f49a652SStefano Zampini #if defined(PETSC_USE_DEBUG)
993f49a652SStefano Zampini   for (i=0; i<N; i++) {
1003f49a652SStefano Zampini     if (rows[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row requested to be zeroed");
1013f49a652SStefano Zampini     if (rows[i] >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D requested to be zeroed greater than or equal number of rows %D",rows[i],A->rmap->n);
1023f49a652SStefano Zampini     if (rows[i] >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Col %D requested to be zeroed greater than or equal number of cols %D",rows[i],A->cmap->n);
1033f49a652SStefano Zampini   }
1043f49a652SStefano Zampini #endif
1053f49a652SStefano Zampini 
1063f49a652SStefano Zampini   /* fix right hand side if needed */
1073f49a652SStefano Zampini   if (x && b) {
1083f49a652SStefano Zampini     ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr);
1093f49a652SStefano Zampini     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
1103f49a652SStefano Zampini     for (i=0; i<N; i++) bb[rows[i]] = diag*xx[rows[i]];
1113f49a652SStefano Zampini     ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr);
1123f49a652SStefano Zampini     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
1133f49a652SStefano Zampini   }
1143f49a652SStefano Zampini 
1153f49a652SStefano Zampini   for (i=0; i<N; i++) {
1163f49a652SStefano Zampini     slot = l->v + rows[i]*m;
1173f49a652SStefano Zampini     ierr = PetscMemzero(slot,r*sizeof(PetscScalar));CHKERRQ(ierr);
1183f49a652SStefano Zampini   }
1193f49a652SStefano Zampini   for (i=0; i<N; i++) {
1203f49a652SStefano Zampini     slot = l->v + rows[i];
1213f49a652SStefano Zampini     for (j=0; j<n; j++) { *slot = 0.0; slot += m;}
1223f49a652SStefano Zampini   }
1233f49a652SStefano Zampini   if (diag != 0.0) {
1243f49a652SStefano Zampini     if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only coded for square matrices");
1253f49a652SStefano Zampini     for (i=0; i<N; i++) {
1263f49a652SStefano Zampini       slot  = l->v + (m+1)*rows[i];
1273f49a652SStefano Zampini       *slot = diag;
1283f49a652SStefano Zampini     }
1293f49a652SStefano Zampini   }
1303f49a652SStefano Zampini   PetscFunctionReturn(0);
1313f49a652SStefano Zampini }
1323f49a652SStefano Zampini 
133abc3b08eSStefano Zampini PetscErrorCode MatPtAPNumeric_SeqDense_SeqDense(Mat A,Mat P,Mat C)
134abc3b08eSStefano Zampini {
135abc3b08eSStefano Zampini   Mat_SeqDense   *c = (Mat_SeqDense*)(C->data);
136abc3b08eSStefano Zampini   PetscErrorCode ierr;
137abc3b08eSStefano Zampini 
138abc3b08eSStefano Zampini   PetscFunctionBegin;
139abc3b08eSStefano Zampini   ierr = MatMatMultNumeric_SeqDense_SeqDense(A,P,c->ptapwork);CHKERRQ(ierr);
140abc3b08eSStefano Zampini   ierr = MatTransposeMatMultNumeric_SeqDense_SeqDense(P,c->ptapwork,C);CHKERRQ(ierr);
141abc3b08eSStefano Zampini   PetscFunctionReturn(0);
142abc3b08eSStefano Zampini }
143abc3b08eSStefano Zampini 
144abc3b08eSStefano Zampini PetscErrorCode MatPtAPSymbolic_SeqDense_SeqDense(Mat A,Mat P,PetscReal fill,Mat *C)
145abc3b08eSStefano Zampini {
146abc3b08eSStefano Zampini   Mat_SeqDense   *c;
147abc3b08eSStefano Zampini   PetscErrorCode ierr;
148abc3b08eSStefano Zampini 
149abc3b08eSStefano Zampini   PetscFunctionBegin;
150abc3b08eSStefano Zampini   ierr = MatCreateSeqDense(PetscObjectComm((PetscObject)A),P->cmap->N,P->cmap->N,NULL,C);CHKERRQ(ierr);
151abc3b08eSStefano Zampini   c = (Mat_SeqDense*)((*C)->data);
152abc3b08eSStefano Zampini   ierr = MatCreateSeqDense(PetscObjectComm((PetscObject)A),A->rmap->N,P->cmap->N,NULL,&c->ptapwork);CHKERRQ(ierr);
153abc3b08eSStefano Zampini   PetscFunctionReturn(0);
154abc3b08eSStefano Zampini }
155abc3b08eSStefano Zampini 
156150d2497SBarry Smith PETSC_INTERN PetscErrorCode MatPtAP_SeqDense_SeqDense(Mat A,Mat P,MatReuse reuse,PetscReal fill,Mat *C)
157abc3b08eSStefano Zampini {
158abc3b08eSStefano Zampini   PetscErrorCode ierr;
159abc3b08eSStefano Zampini 
160abc3b08eSStefano Zampini   PetscFunctionBegin;
161abc3b08eSStefano Zampini   if (reuse == MAT_INITIAL_MATRIX) {
162abc3b08eSStefano Zampini     ierr = MatPtAPSymbolic_SeqDense_SeqDense(A,P,fill,C);CHKERRQ(ierr);
163abc3b08eSStefano Zampini   }
164abc3b08eSStefano Zampini   ierr = PetscLogEventBegin(MAT_PtAPNumeric,A,P,0,0);CHKERRQ(ierr);
165abc3b08eSStefano Zampini   ierr = (*(*C)->ops->ptapnumeric)(A,P,*C);CHKERRQ(ierr);
166abc3b08eSStefano Zampini   ierr = PetscLogEventEnd(MAT_PtAPNumeric,A,P,0,0);CHKERRQ(ierr);
167abc3b08eSStefano Zampini   PetscFunctionReturn(0);
168abc3b08eSStefano Zampini }
169abc3b08eSStefano Zampini 
170cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqAIJ_SeqDense(Mat A,MatType newtype,MatReuse reuse,Mat *newmat)
171b49cda9fSStefano Zampini {
172a13144ffSStefano Zampini   Mat            B = NULL;
173b49cda9fSStefano Zampini   Mat_SeqAIJ     *a = (Mat_SeqAIJ*)A->data;
174b49cda9fSStefano Zampini   Mat_SeqDense   *b;
175b49cda9fSStefano Zampini   PetscErrorCode ierr;
176b49cda9fSStefano Zampini   PetscInt       *ai=a->i,*aj=a->j,m=A->rmap->N,n=A->cmap->N,i;
177b49cda9fSStefano Zampini   MatScalar      *av=a->a;
178a13144ffSStefano Zampini   PetscBool      isseqdense;
179b49cda9fSStefano Zampini 
180b49cda9fSStefano Zampini   PetscFunctionBegin;
181a13144ffSStefano Zampini   if (reuse == MAT_REUSE_MATRIX) {
182a13144ffSStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)*newmat,MATSEQDENSE,&isseqdense);CHKERRQ(ierr);
183a13144ffSStefano Zampini     if (!isseqdense) SETERRQ1(PetscObjectComm((PetscObject)*newmat),PETSC_ERR_USER,"Cannot reuse matrix of type %s",((PetscObject)(*newmat))->type);
184a13144ffSStefano Zampini   }
185a13144ffSStefano Zampini   if (reuse != MAT_REUSE_MATRIX) {
186b49cda9fSStefano Zampini     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
187b49cda9fSStefano Zampini     ierr = MatSetSizes(B,m,n,m,n);CHKERRQ(ierr);
188b49cda9fSStefano Zampini     ierr = MatSetType(B,MATSEQDENSE);CHKERRQ(ierr);
189b49cda9fSStefano Zampini     ierr = MatSeqDenseSetPreallocation(B,NULL);CHKERRQ(ierr);
190b49cda9fSStefano Zampini     b    = (Mat_SeqDense*)(B->data);
191a13144ffSStefano Zampini   } else {
192a13144ffSStefano Zampini     b    = (Mat_SeqDense*)((*newmat)->data);
193a13144ffSStefano Zampini     ierr = PetscMemzero(b->v,m*n*sizeof(PetscScalar));CHKERRQ(ierr);
194a13144ffSStefano Zampini   }
195b49cda9fSStefano Zampini   for (i=0; i<m; i++) {
196b49cda9fSStefano Zampini     PetscInt j;
197b49cda9fSStefano Zampini     for (j=0;j<ai[1]-ai[0];j++) {
198b49cda9fSStefano Zampini       b->v[*aj*m+i] = *av;
199b49cda9fSStefano Zampini       aj++;
200b49cda9fSStefano Zampini       av++;
201b49cda9fSStefano Zampini     }
202b49cda9fSStefano Zampini     ai++;
203b49cda9fSStefano Zampini   }
204b49cda9fSStefano Zampini 
205511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
206a13144ffSStefano Zampini     ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
207a13144ffSStefano Zampini     ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
20828be2f97SBarry Smith     ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr);
209b49cda9fSStefano Zampini   } else {
210a13144ffSStefano Zampini     if (B) *newmat = B;
211a13144ffSStefano Zampini     ierr = MatAssemblyBegin(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
212a13144ffSStefano Zampini     ierr = MatAssemblyEnd(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
213b49cda9fSStefano Zampini   }
214b49cda9fSStefano Zampini   PetscFunctionReturn(0);
215b49cda9fSStefano Zampini }
216b49cda9fSStefano Zampini 
217cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqDense_SeqAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat)
2186a63e612SBarry Smith {
2196a63e612SBarry Smith   Mat            B;
2206a63e612SBarry Smith   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
2216a63e612SBarry Smith   PetscErrorCode ierr;
2229399e1b8SMatthew G. Knepley   PetscInt       i, j;
2239399e1b8SMatthew G. Knepley   PetscInt       *rows, *nnz;
2249399e1b8SMatthew G. Knepley   MatScalar      *aa = a->v, *vals;
2256a63e612SBarry Smith 
2266a63e612SBarry Smith   PetscFunctionBegin;
227ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
2286a63e612SBarry Smith   ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
2296a63e612SBarry Smith   ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr);
2309399e1b8SMatthew G. Knepley   ierr = PetscCalloc3(A->rmap->n,&rows,A->rmap->n,&nnz,A->rmap->n,&vals);CHKERRQ(ierr);
2319399e1b8SMatthew G. Knepley   for (j=0; j<A->cmap->n; j++) {
2329399e1b8SMatthew G. Knepley     for (i=0; i<A->rmap->n; i++) if (aa[i] != 0.0 || i == j) ++nnz[i];
2336a63e612SBarry Smith     aa += a->lda;
2346a63e612SBarry Smith   }
2359399e1b8SMatthew G. Knepley   ierr = MatSeqAIJSetPreallocation(B,PETSC_DETERMINE,nnz);CHKERRQ(ierr);
2369399e1b8SMatthew G. Knepley   aa = a->v;
2379399e1b8SMatthew G. Knepley   for (j=0; j<A->cmap->n; j++) {
2389399e1b8SMatthew G. Knepley     PetscInt numRows = 0;
2399399e1b8SMatthew G. Knepley     for (i=0; i<A->rmap->n; i++) if (aa[i] != 0.0 || i == j) {rows[numRows] = i; vals[numRows++] = aa[i];}
2409399e1b8SMatthew G. Knepley     ierr = MatSetValues(B,numRows,rows,1,&j,vals,INSERT_VALUES);CHKERRQ(ierr);
2419399e1b8SMatthew G. Knepley     aa  += a->lda;
2429399e1b8SMatthew G. Knepley   }
2439399e1b8SMatthew G. Knepley   ierr = PetscFree3(rows,nnz,vals);CHKERRQ(ierr);
2446a63e612SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2456a63e612SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2466a63e612SBarry Smith 
247511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
24828be2f97SBarry Smith     ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr);
2496a63e612SBarry Smith   } else {
2506a63e612SBarry Smith     *newmat = B;
2516a63e612SBarry Smith   }
2526a63e612SBarry Smith   PetscFunctionReturn(0);
2536a63e612SBarry Smith }
2546a63e612SBarry Smith 
255e0877f53SBarry Smith static PetscErrorCode MatAXPY_SeqDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str)
2561987afe7SBarry Smith {
2571987afe7SBarry Smith   Mat_SeqDense   *x     = (Mat_SeqDense*)X->data,*y = (Mat_SeqDense*)Y->data;
258f4df32b1SMatthew Knepley   PetscScalar    oalpha = alpha;
25913f74950SBarry Smith   PetscInt       j;
2600805154bSBarry Smith   PetscBLASInt   N,m,ldax,lday,one = 1;
261efee365bSSatish Balay   PetscErrorCode ierr;
2623a40ed3dSBarry Smith 
2633a40ed3dSBarry Smith   PetscFunctionBegin;
264c5df96a5SBarry Smith   ierr = PetscBLASIntCast(X->rmap->n*X->cmap->n,&N);CHKERRQ(ierr);
265c5df96a5SBarry Smith   ierr = PetscBLASIntCast(X->rmap->n,&m);CHKERRQ(ierr);
266c5df96a5SBarry Smith   ierr = PetscBLASIntCast(x->lda,&ldax);CHKERRQ(ierr);
267c5df96a5SBarry Smith   ierr = PetscBLASIntCast(y->lda,&lday);CHKERRQ(ierr);
268a5ce6ee0Svictorle   if (ldax>m || lday>m) {
269d0f46423SBarry Smith     for (j=0; j<X->cmap->n; j++) {
2708b83055fSJed Brown       PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&m,&oalpha,x->v+j*ldax,&one,y->v+j*lday,&one));
271a5ce6ee0Svictorle     }
272a5ce6ee0Svictorle   } else {
2738b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&N,&oalpha,x->v,&one,y->v,&one));
274a5ce6ee0Svictorle   }
275a3fa217bSJose E. Roman   ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
2760450473dSBarry Smith   ierr = PetscLogFlops(PetscMax(2*N-1,0));CHKERRQ(ierr);
2773a40ed3dSBarry Smith   PetscFunctionReturn(0);
2781987afe7SBarry Smith }
2791987afe7SBarry Smith 
280e0877f53SBarry Smith static PetscErrorCode MatGetInfo_SeqDense(Mat A,MatInfoType flag,MatInfo *info)
281289bc588SBarry Smith {
282d0f46423SBarry Smith   PetscInt N = A->rmap->n*A->cmap->n;
2833a40ed3dSBarry Smith 
2843a40ed3dSBarry Smith   PetscFunctionBegin;
2854e220ebcSLois Curfman McInnes   info->block_size        = 1.0;
2864e220ebcSLois Curfman McInnes   info->nz_allocated      = (double)N;
2876de62eeeSBarry Smith   info->nz_used           = (double)N;
2886de62eeeSBarry Smith   info->nz_unneeded       = (double)0;
2894e220ebcSLois Curfman McInnes   info->assemblies        = (double)A->num_ass;
2904e220ebcSLois Curfman McInnes   info->mallocs           = 0;
2917adad957SLisandro Dalcin   info->memory            = ((PetscObject)A)->mem;
2924e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0;
2934e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
2944e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
2953a40ed3dSBarry Smith   PetscFunctionReturn(0);
296289bc588SBarry Smith }
297289bc588SBarry Smith 
298e0877f53SBarry Smith static PetscErrorCode MatScale_SeqDense(Mat A,PetscScalar alpha)
29980cd9d93SLois Curfman McInnes {
300273d9f13SBarry Smith   Mat_SeqDense   *a     = (Mat_SeqDense*)A->data;
301f4df32b1SMatthew Knepley   PetscScalar    oalpha = alpha;
302efee365bSSatish Balay   PetscErrorCode ierr;
303c5df96a5SBarry Smith   PetscBLASInt   one = 1,j,nz,lda;
30480cd9d93SLois Curfman McInnes 
3053a40ed3dSBarry Smith   PetscFunctionBegin;
306c5df96a5SBarry Smith   ierr = PetscBLASIntCast(a->lda,&lda);CHKERRQ(ierr);
307d0f46423SBarry Smith   if (lda>A->rmap->n) {
308c5df96a5SBarry Smith     ierr = PetscBLASIntCast(A->rmap->n,&nz);CHKERRQ(ierr);
309d0f46423SBarry Smith     for (j=0; j<A->cmap->n; j++) {
3108b83055fSJed Brown       PetscStackCallBLAS("BLASscal",BLASscal_(&nz,&oalpha,a->v+j*lda,&one));
311a5ce6ee0Svictorle     }
312a5ce6ee0Svictorle   } else {
313c5df96a5SBarry Smith     ierr = PetscBLASIntCast(A->rmap->n*A->cmap->n,&nz);CHKERRQ(ierr);
3148b83055fSJed Brown     PetscStackCallBLAS("BLASscal",BLASscal_(&nz,&oalpha,a->v,&one));
315a5ce6ee0Svictorle   }
316efee365bSSatish Balay   ierr = PetscLogFlops(nz);CHKERRQ(ierr);
3173a40ed3dSBarry Smith   PetscFunctionReturn(0);
31880cd9d93SLois Curfman McInnes }
31980cd9d93SLois Curfman McInnes 
320e0877f53SBarry Smith static PetscErrorCode MatIsHermitian_SeqDense(Mat A,PetscReal rtol,PetscBool  *fl)
3211cbb95d3SBarry Smith {
3221cbb95d3SBarry Smith   Mat_SeqDense *a = (Mat_SeqDense*)A->data;
323d0f46423SBarry Smith   PetscInt     i,j,m = A->rmap->n,N;
3241cbb95d3SBarry Smith   PetscScalar  *v = a->v;
3251cbb95d3SBarry Smith 
3261cbb95d3SBarry Smith   PetscFunctionBegin;
3271cbb95d3SBarry Smith   *fl = PETSC_FALSE;
328d0f46423SBarry Smith   if (A->rmap->n != A->cmap->n) PetscFunctionReturn(0);
3291cbb95d3SBarry Smith   N = a->lda;
3301cbb95d3SBarry Smith 
3311cbb95d3SBarry Smith   for (i=0; i<m; i++) {
3321cbb95d3SBarry Smith     for (j=i+1; j<m; j++) {
3331cbb95d3SBarry Smith       if (PetscAbsScalar(v[i+j*N] - PetscConj(v[j+i*N])) > rtol) PetscFunctionReturn(0);
3341cbb95d3SBarry Smith     }
3351cbb95d3SBarry Smith   }
3361cbb95d3SBarry Smith   *fl = PETSC_TRUE;
3371cbb95d3SBarry Smith   PetscFunctionReturn(0);
3381cbb95d3SBarry Smith }
3391cbb95d3SBarry Smith 
340e0877f53SBarry Smith static PetscErrorCode MatDuplicateNoCreate_SeqDense(Mat newi,Mat A,MatDuplicateOption cpvalues)
341b24902e0SBarry Smith {
342b24902e0SBarry Smith   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data,*l;
343b24902e0SBarry Smith   PetscErrorCode ierr;
344b24902e0SBarry Smith   PetscInt       lda = (PetscInt)mat->lda,j,m;
345b24902e0SBarry Smith 
346b24902e0SBarry Smith   PetscFunctionBegin;
347aa5ea44dSBarry Smith   ierr = PetscLayoutReference(A->rmap,&newi->rmap);CHKERRQ(ierr);
348aa5ea44dSBarry Smith   ierr = PetscLayoutReference(A->cmap,&newi->cmap);CHKERRQ(ierr);
3490298fd71SBarry Smith   ierr = MatSeqDenseSetPreallocation(newi,NULL);CHKERRQ(ierr);
350b24902e0SBarry Smith   if (cpvalues == MAT_COPY_VALUES) {
351b24902e0SBarry Smith     l = (Mat_SeqDense*)newi->data;
352d0f46423SBarry Smith     if (lda>A->rmap->n) {
353d0f46423SBarry Smith       m = A->rmap->n;
354d0f46423SBarry Smith       for (j=0; j<A->cmap->n; j++) {
355b24902e0SBarry Smith         ierr = PetscMemcpy(l->v+j*m,mat->v+j*lda,m*sizeof(PetscScalar));CHKERRQ(ierr);
356b24902e0SBarry Smith       }
357b24902e0SBarry Smith     } else {
358d0f46423SBarry Smith       ierr = PetscMemcpy(l->v,mat->v,A->rmap->n*A->cmap->n*sizeof(PetscScalar));CHKERRQ(ierr);
359b24902e0SBarry Smith     }
360b24902e0SBarry Smith   }
361b24902e0SBarry Smith   newi->assembled = PETSC_TRUE;
362b24902e0SBarry Smith   PetscFunctionReturn(0);
363b24902e0SBarry Smith }
364b24902e0SBarry Smith 
365e0877f53SBarry Smith static PetscErrorCode MatDuplicate_SeqDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat)
36602cad45dSBarry Smith {
3676849ba73SBarry Smith   PetscErrorCode ierr;
36802cad45dSBarry Smith 
3693a40ed3dSBarry Smith   PetscFunctionBegin;
370ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)A),newmat);CHKERRQ(ierr);
371d0f46423SBarry Smith   ierr = MatSetSizes(*newmat,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n);CHKERRQ(ierr);
3725c9eb25fSBarry Smith   ierr = MatSetType(*newmat,((PetscObject)A)->type_name);CHKERRQ(ierr);
373719d5645SBarry Smith   ierr = MatDuplicateNoCreate_SeqDense(*newmat,A,cpvalues);CHKERRQ(ierr);
374b24902e0SBarry Smith   PetscFunctionReturn(0);
375b24902e0SBarry Smith }
376b24902e0SBarry Smith 
3776ee01492SSatish Balay 
378e0877f53SBarry Smith static PetscErrorCode MatLUFactor_SeqDense(Mat,IS,IS,const MatFactorInfo*);
379719d5645SBarry Smith 
380e0877f53SBarry Smith static PetscErrorCode MatLUFactorNumeric_SeqDense(Mat fact,Mat A,const MatFactorInfo *info_dummy)
381289bc588SBarry Smith {
3824482741eSBarry Smith   MatFactorInfo  info;
383a093e273SMatthew Knepley   PetscErrorCode ierr;
3843a40ed3dSBarry Smith 
3853a40ed3dSBarry Smith   PetscFunctionBegin;
386c3ef05f6SHong Zhang   ierr = MatDuplicateNoCreate_SeqDense(fact,A,MAT_COPY_VALUES);CHKERRQ(ierr);
387719d5645SBarry Smith   ierr = MatLUFactor_SeqDense(fact,0,0,&info);CHKERRQ(ierr);
3883a40ed3dSBarry Smith   PetscFunctionReturn(0);
389289bc588SBarry Smith }
3906ee01492SSatish Balay 
391e0877f53SBarry Smith static PetscErrorCode MatSolve_SeqDense(Mat A,Vec xx,Vec yy)
392289bc588SBarry Smith {
393c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
3946849ba73SBarry Smith   PetscErrorCode    ierr;
395f1ceaac6SMatthew G. Knepley   const PetscScalar *x;
396f1ceaac6SMatthew G. Knepley   PetscScalar       *y;
397c5df96a5SBarry Smith   PetscBLASInt      one = 1,info,m;
39867e560aaSBarry Smith 
3993a40ed3dSBarry Smith   PetscFunctionBegin;
400c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
401f1ceaac6SMatthew G. Knepley   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
4021ebc52fbSHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
403d0f46423SBarry Smith   ierr = PetscMemcpy(y,x,A->rmap->n*sizeof(PetscScalar));CHKERRQ(ierr);
404d5f3da31SBarry Smith   if (A->factortype == MAT_FACTOR_LU) {
405ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_GETRS)
406e32f2f54SBarry Smith     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"GETRS - Lapack routine is unavailable.");
407ae7cfcebSSatish Balay #else
4088b83055fSJed Brown     PetscStackCallBLAS("LAPACKgetrs",LAPACKgetrs_("N",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info));
409e32f2f54SBarry Smith     if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"GETRS - Bad solve");
410ae7cfcebSSatish Balay #endif
411d5f3da31SBarry Smith   } else if (A->factortype == MAT_FACTOR_CHOLESKY) {
412ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_POTRS)
413e32f2f54SBarry Smith     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"POTRS - Lapack routine is unavailable.");
414ae7cfcebSSatish Balay #else
415a49dc2a2SStefano Zampini     if (A->spd) {
4168b83055fSJed Brown       PetscStackCallBLAS("LAPACKpotrs",LAPACKpotrs_("L",&m,&one,mat->v,&mat->lda,y,&m,&info));
417e32f2f54SBarry Smith       if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"POTRS Bad solve");
418a49dc2a2SStefano Zampini #if defined (PETSC_USE_COMPLEX)
419a49dc2a2SStefano Zampini     } else if (A->hermitian) {
420a49dc2a2SStefano Zampini       PetscStackCallBLAS("LAPACKhetrs",LAPACKhetrs_("L",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info));
421a49dc2a2SStefano Zampini       if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"HETRS Bad solve");
422a49dc2a2SStefano Zampini #endif
423a49dc2a2SStefano Zampini     } else { /* symmetric case */
424a49dc2a2SStefano Zampini       PetscStackCallBLAS("LAPACKsytrs",LAPACKsytrs_("L",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info));
425a49dc2a2SStefano Zampini       if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"SYTRS Bad solve");
426a49dc2a2SStefano Zampini     }
427ae7cfcebSSatish Balay #endif
4282205254eSKarl Rupp   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Matrix must be factored to solve");
429f1ceaac6SMatthew G. Knepley   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
4301ebc52fbSHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
431dc0b31edSSatish Balay   ierr = PetscLogFlops(2.0*A->cmap->n*A->cmap->n - A->cmap->n);CHKERRQ(ierr);
4323a40ed3dSBarry Smith   PetscFunctionReturn(0);
433289bc588SBarry Smith }
4346ee01492SSatish Balay 
435e0877f53SBarry Smith static PetscErrorCode MatMatSolve_SeqDense(Mat A,Mat B,Mat X)
43685e2c93fSHong Zhang {
43785e2c93fSHong Zhang   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
43885e2c93fSHong Zhang   PetscErrorCode ierr;
43985e2c93fSHong Zhang   PetscScalar    *b,*x;
440efb80c78SLisandro Dalcin   PetscInt       n;
441783b601eSJed Brown   PetscBLASInt   nrhs,info,m;
442bda8bf91SBarry Smith   PetscBool      flg;
44385e2c93fSHong Zhang 
44485e2c93fSHong Zhang   PetscFunctionBegin;
445c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
4460298fd71SBarry Smith   ierr = PetscObjectTypeCompareAny((PetscObject)B,&flg,MATSEQDENSE,MATMPIDENSE,NULL);CHKERRQ(ierr);
447ce94432eSBarry Smith   if (!flg) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Matrix B must be MATDENSE matrix");
4480298fd71SBarry Smith   ierr = PetscObjectTypeCompareAny((PetscObject)X,&flg,MATSEQDENSE,MATMPIDENSE,NULL);CHKERRQ(ierr);
449ce94432eSBarry Smith   if (!flg) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Matrix X must be MATDENSE matrix");
450bda8bf91SBarry Smith 
4510298fd71SBarry Smith   ierr = MatGetSize(B,NULL,&n);CHKERRQ(ierr);
452c5df96a5SBarry Smith   ierr = PetscBLASIntCast(n,&nrhs);CHKERRQ(ierr);
4538c778c55SBarry Smith   ierr = MatDenseGetArray(B,&b);CHKERRQ(ierr);
4548c778c55SBarry Smith   ierr = MatDenseGetArray(X,&x);CHKERRQ(ierr);
45585e2c93fSHong Zhang 
456f272c775SHong Zhang   ierr = PetscMemcpy(x,b,m*nrhs*sizeof(PetscScalar));CHKERRQ(ierr);
45785e2c93fSHong Zhang 
45885e2c93fSHong Zhang   if (A->factortype == MAT_FACTOR_LU) {
45985e2c93fSHong Zhang #if defined(PETSC_MISSING_LAPACK_GETRS)
46085e2c93fSHong Zhang     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"GETRS - Lapack routine is unavailable.");
46185e2c93fSHong Zhang #else
4628b83055fSJed Brown     PetscStackCallBLAS("LAPACKgetrs",LAPACKgetrs_("N",&m,&nrhs,mat->v,&mat->lda,mat->pivots,x,&m,&info));
46385e2c93fSHong Zhang     if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"GETRS - Bad solve");
46485e2c93fSHong Zhang #endif
46585e2c93fSHong Zhang   } else if (A->factortype == MAT_FACTOR_CHOLESKY) {
46685e2c93fSHong Zhang #if defined(PETSC_MISSING_LAPACK_POTRS)
46785e2c93fSHong Zhang     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"POTRS - Lapack routine is unavailable.");
46885e2c93fSHong Zhang #else
469a49dc2a2SStefano Zampini     if (A->spd) {
4708b83055fSJed Brown       PetscStackCallBLAS("LAPACKpotrs",LAPACKpotrs_("L",&m,&nrhs,mat->v,&mat->lda,x,&m,&info));
47185e2c93fSHong Zhang       if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"POTRS Bad solve");
472a49dc2a2SStefano Zampini #if defined (PETSC_USE_COMPLEX)
473a49dc2a2SStefano Zampini     } else if (A->hermitian) {
474a49dc2a2SStefano Zampini       PetscStackCallBLAS("LAPACKhetrs",LAPACKhetrs_("L",&m,&nrhs,mat->v,&mat->lda,mat->pivots,x,&m,&info));
475a49dc2a2SStefano Zampini       if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"HETRS Bad solve");
476a49dc2a2SStefano Zampini #endif
477a49dc2a2SStefano Zampini     } else { /* symmetric case */
478a49dc2a2SStefano Zampini       PetscStackCallBLAS("LAPACKsytrs",LAPACKsytrs_("L",&m,&nrhs,mat->v,&mat->lda,mat->pivots,x,&m,&info));
479a49dc2a2SStefano Zampini       if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"SYTRS Bad solve");
480a49dc2a2SStefano Zampini     }
48185e2c93fSHong Zhang #endif
4822205254eSKarl Rupp   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Matrix must be factored to solve");
48385e2c93fSHong Zhang 
4848c778c55SBarry Smith   ierr = MatDenseRestoreArray(B,&b);CHKERRQ(ierr);
4858c778c55SBarry Smith   ierr = MatDenseRestoreArray(X,&x);CHKERRQ(ierr);
48685e2c93fSHong Zhang   ierr = PetscLogFlops(nrhs*(2.0*m*m - m));CHKERRQ(ierr);
48785e2c93fSHong Zhang   PetscFunctionReturn(0);
48885e2c93fSHong Zhang }
48985e2c93fSHong Zhang 
490e0877f53SBarry Smith static PetscErrorCode MatSolveTranspose_SeqDense(Mat A,Vec xx,Vec yy)
491da3a660dSBarry Smith {
492c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
493dfbe8321SBarry Smith   PetscErrorCode    ierr;
494f1ceaac6SMatthew G. Knepley   const PetscScalar *x;
495f1ceaac6SMatthew G. Knepley   PetscScalar       *y;
496c5df96a5SBarry Smith   PetscBLASInt      one = 1,info,m;
49767e560aaSBarry Smith 
4983a40ed3dSBarry Smith   PetscFunctionBegin;
499c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
500f1ceaac6SMatthew G. Knepley   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
5011ebc52fbSHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
502d0f46423SBarry Smith   ierr = PetscMemcpy(y,x,A->rmap->n*sizeof(PetscScalar));CHKERRQ(ierr);
5038208b9aeSStefano Zampini   if (A->factortype == MAT_FACTOR_LU) {
504ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_GETRS)
505e32f2f54SBarry Smith     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"GETRS - Lapack routine is unavailable.");
506ae7cfcebSSatish Balay #else
5078b83055fSJed Brown     PetscStackCallBLAS("LAPACKgetrs",LAPACKgetrs_("T",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info));
508e32f2f54SBarry Smith     if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"POTRS - Bad solve");
509ae7cfcebSSatish Balay #endif
5108208b9aeSStefano Zampini   } else if (A->factortype == MAT_FACTOR_CHOLESKY) {
511ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_POTRS)
512e32f2f54SBarry Smith     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"POTRS - Lapack routine is unavailable.");
513ae7cfcebSSatish Balay #else
514a49dc2a2SStefano Zampini     if (A->spd) {
5158b83055fSJed Brown       PetscStackCallBLAS("LAPACKpotrs",LAPACKpotrs_("L",&m,&one,mat->v,&mat->lda,y,&m,&info));
516a49dc2a2SStefano Zampini       if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"POTRS Bad solve");
517a49dc2a2SStefano Zampini #if defined (PETSC_USE_COMPLEX)
518a49dc2a2SStefano Zampini     } else if (A->hermitian) {
519a49dc2a2SStefano Zampini       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSolveTranspose with Cholesky/Hermitian not available");
520ae7cfcebSSatish Balay #endif
521a49dc2a2SStefano Zampini     } else { /* symmetric case */
522a49dc2a2SStefano Zampini       PetscStackCallBLAS("LAPACKsytrs",LAPACKsytrs_("L",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info));
523a49dc2a2SStefano Zampini       if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"SYTRS Bad solve");
524da3a660dSBarry Smith     }
525a49dc2a2SStefano Zampini #endif
526a49dc2a2SStefano Zampini   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Matrix must be factored to solve");
527f1ceaac6SMatthew G. Knepley   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
5281ebc52fbSHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
529dc0b31edSSatish Balay   ierr = PetscLogFlops(2.0*A->cmap->n*A->cmap->n - A->cmap->n);CHKERRQ(ierr);
5303a40ed3dSBarry Smith   PetscFunctionReturn(0);
531da3a660dSBarry Smith }
5326ee01492SSatish Balay 
533e0877f53SBarry Smith static PetscErrorCode MatSolveAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy)
534da3a660dSBarry Smith {
535dfbe8321SBarry Smith   PetscErrorCode    ierr;
536f1ceaac6SMatthew G. Knepley   const PetscScalar *x;
537f1ceaac6SMatthew G. Knepley   PetscScalar       *y,sone = 1.0;
538da3a660dSBarry Smith   Vec               tmp = 0;
53967e560aaSBarry Smith 
5403a40ed3dSBarry Smith   PetscFunctionBegin;
541f1ceaac6SMatthew G. Knepley   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
5421ebc52fbSHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
543d0f46423SBarry Smith   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
544da3a660dSBarry Smith   if (yy == zz) {
54578b31e54SBarry Smith     ierr = VecDuplicate(yy,&tmp);CHKERRQ(ierr);
5463bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)tmp);CHKERRQ(ierr);
54778b31e54SBarry Smith     ierr = VecCopy(yy,tmp);CHKERRQ(ierr);
548da3a660dSBarry Smith   }
5498208b9aeSStefano Zampini   ierr = MatSolve_SeqDense(A,xx,yy);CHKERRQ(ierr);
5506bf464f9SBarry Smith   if (tmp) {
5516bf464f9SBarry Smith     ierr = VecAXPY(yy,sone,tmp);CHKERRQ(ierr);
5526bf464f9SBarry Smith     ierr = VecDestroy(&tmp);CHKERRQ(ierr);
5536bf464f9SBarry Smith   } else {
5546bf464f9SBarry Smith     ierr = VecAXPY(yy,sone,zz);CHKERRQ(ierr);
5556bf464f9SBarry Smith   }
556f1ceaac6SMatthew G. Knepley   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
5571ebc52fbSHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
5588208b9aeSStefano Zampini   ierr = PetscLogFlops(A->cmap->n);CHKERRQ(ierr);
5593a40ed3dSBarry Smith   PetscFunctionReturn(0);
560da3a660dSBarry Smith }
56167e560aaSBarry Smith 
562e0877f53SBarry Smith static PetscErrorCode MatSolveTransposeAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy)
563da3a660dSBarry Smith {
5646849ba73SBarry Smith   PetscErrorCode    ierr;
565f1ceaac6SMatthew G. Knepley   const PetscScalar *x;
566f1ceaac6SMatthew G. Knepley   PetscScalar       *y,sone = 1.0;
56789ae1891SBarry Smith   Vec               tmp = NULL;
56867e560aaSBarry Smith 
5693a40ed3dSBarry Smith   PetscFunctionBegin;
570d0f46423SBarry Smith   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
571f1ceaac6SMatthew G. Knepley   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
5721ebc52fbSHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
573da3a660dSBarry Smith   if (yy == zz) {
57478b31e54SBarry Smith     ierr = VecDuplicate(yy,&tmp);CHKERRQ(ierr);
5753bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)tmp);CHKERRQ(ierr);
57678b31e54SBarry Smith     ierr = VecCopy(yy,tmp);CHKERRQ(ierr);
577da3a660dSBarry Smith   }
5788208b9aeSStefano Zampini   ierr = MatSolveTranspose_SeqDense(A,xx,yy);CHKERRQ(ierr);
57990f02eecSBarry Smith   if (tmp) {
5802dcb1b2aSMatthew Knepley     ierr = VecAXPY(yy,sone,tmp);CHKERRQ(ierr);
5816bf464f9SBarry Smith     ierr = VecDestroy(&tmp);CHKERRQ(ierr);
5823a40ed3dSBarry Smith   } else {
5832dcb1b2aSMatthew Knepley     ierr = VecAXPY(yy,sone,zz);CHKERRQ(ierr);
58490f02eecSBarry Smith   }
585f1ceaac6SMatthew G. Knepley   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
5861ebc52fbSHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
5878208b9aeSStefano Zampini   ierr = PetscLogFlops(A->cmap->n);CHKERRQ(ierr);
5883a40ed3dSBarry Smith   PetscFunctionReturn(0);
589da3a660dSBarry Smith }
590db4efbfdSBarry Smith 
591db4efbfdSBarry Smith /* ---------------------------------------------------------------*/
592db4efbfdSBarry Smith /* COMMENT: I have chosen to hide row permutation in the pivots,
593db4efbfdSBarry Smith    rather than put it in the Mat->row slot.*/
594e0877f53SBarry Smith static PetscErrorCode MatLUFactor_SeqDense(Mat A,IS row,IS col,const MatFactorInfo *minfo)
595db4efbfdSBarry Smith {
596db4efbfdSBarry Smith #if defined(PETSC_MISSING_LAPACK_GETRF)
597db4efbfdSBarry Smith   PetscFunctionBegin;
598e32f2f54SBarry Smith   SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"GETRF - Lapack routine is unavailable.");
599db4efbfdSBarry Smith #else
600db4efbfdSBarry Smith   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
601db4efbfdSBarry Smith   PetscErrorCode ierr;
602db4efbfdSBarry Smith   PetscBLASInt   n,m,info;
603db4efbfdSBarry Smith 
604db4efbfdSBarry Smith   PetscFunctionBegin;
605c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
606c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
607db4efbfdSBarry Smith   if (!mat->pivots) {
6088208b9aeSStefano Zampini     ierr = PetscMalloc1(A->rmap->n,&mat->pivots);CHKERRQ(ierr);
6093bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)A,A->rmap->n*sizeof(PetscBLASInt));CHKERRQ(ierr);
610db4efbfdSBarry Smith   }
611db4efbfdSBarry Smith   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
6128e57ea43SSatish Balay   ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
6138b83055fSJed Brown   PetscStackCallBLAS("LAPACKgetrf",LAPACKgetrf_(&m,&n,mat->v,&mat->lda,mat->pivots,&info));
6148e57ea43SSatish Balay   ierr = PetscFPTrapPop();CHKERRQ(ierr);
6158e57ea43SSatish Balay 
616e32f2f54SBarry Smith   if (info<0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"Bad argument to LU factorization");
617e32f2f54SBarry Smith   if (info>0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MAT_LU_ZRPVT,"Bad LU factorization");
6188208b9aeSStefano Zampini 
619db4efbfdSBarry Smith   A->ops->solve             = MatSolve_SeqDense;
6208208b9aeSStefano Zampini   A->ops->matsolve          = MatMatSolve_SeqDense;
621db4efbfdSBarry Smith   A->ops->solvetranspose    = MatSolveTranspose_SeqDense;
622db4efbfdSBarry Smith   A->ops->solveadd          = MatSolveAdd_SeqDense;
623db4efbfdSBarry Smith   A->ops->solvetransposeadd = MatSolveTransposeAdd_SeqDense;
624d5f3da31SBarry Smith   A->factortype             = MAT_FACTOR_LU;
625db4efbfdSBarry Smith 
626f6224b95SHong Zhang   ierr = PetscFree(A->solvertype);CHKERRQ(ierr);
627f6224b95SHong Zhang   ierr = PetscStrallocpy(MATSOLVERPETSC,&A->solvertype);CHKERRQ(ierr);
628f6224b95SHong Zhang 
629dc0b31edSSatish Balay   ierr = PetscLogFlops((2.0*A->cmap->n*A->cmap->n*A->cmap->n)/3);CHKERRQ(ierr);
630db4efbfdSBarry Smith #endif
631db4efbfdSBarry Smith   PetscFunctionReturn(0);
632db4efbfdSBarry Smith }
633db4efbfdSBarry Smith 
634a49dc2a2SStefano Zampini /* Cholesky as L*L^T or L*D*L^T and the symmetric/hermitian complex variants */
635e0877f53SBarry Smith static PetscErrorCode MatCholeskyFactor_SeqDense(Mat A,IS perm,const MatFactorInfo *factinfo)
636db4efbfdSBarry Smith {
637db4efbfdSBarry Smith #if defined(PETSC_MISSING_LAPACK_POTRF)
638db4efbfdSBarry Smith   PetscFunctionBegin;
639e32f2f54SBarry Smith   SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"POTRF - Lapack routine is unavailable.");
640db4efbfdSBarry Smith #else
641db4efbfdSBarry Smith   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
642db4efbfdSBarry Smith   PetscErrorCode ierr;
643c5df96a5SBarry Smith   PetscBLASInt   info,n;
644db4efbfdSBarry Smith 
645db4efbfdSBarry Smith   PetscFunctionBegin;
646c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
647db4efbfdSBarry Smith   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
648a49dc2a2SStefano Zampini   if (A->spd) {
6498b83055fSJed Brown     PetscStackCallBLAS("LAPACKpotrf",LAPACKpotrf_("L",&n,mat->v,&mat->lda,&info));
650a49dc2a2SStefano Zampini #if defined (PETSC_USE_COMPLEX)
651a49dc2a2SStefano Zampini   } else if (A->hermitian) {
652a49dc2a2SStefano Zampini     if (!mat->pivots) {
653a49dc2a2SStefano Zampini       ierr = PetscMalloc1(A->rmap->n,&mat->pivots);CHKERRQ(ierr);
654a49dc2a2SStefano Zampini       ierr = PetscLogObjectMemory((PetscObject)A,A->rmap->n*sizeof(PetscBLASInt));CHKERRQ(ierr);
655a49dc2a2SStefano Zampini     }
656a49dc2a2SStefano Zampini     if (!mat->fwork) {
657a49dc2a2SStefano Zampini       PetscScalar dummy;
658a49dc2a2SStefano Zampini 
659a49dc2a2SStefano Zampini       mat->lfwork = -1;
660a49dc2a2SStefano Zampini       PetscStackCallBLAS("LAPACKhetrf",LAPACKhetrf_("L",&n,mat->v,&mat->lda,mat->pivots,&dummy,&mat->lfwork,&info));
661a49dc2a2SStefano Zampini       mat->lfwork = (PetscInt)PetscRealPart(dummy);
662a49dc2a2SStefano Zampini       ierr = PetscMalloc1(mat->lfwork,&mat->fwork);CHKERRQ(ierr);
663a49dc2a2SStefano Zampini       ierr = PetscLogObjectMemory((PetscObject)A,mat->lfwork*sizeof(PetscBLASInt));CHKERRQ(ierr);
664a49dc2a2SStefano Zampini     }
665a49dc2a2SStefano Zampini     PetscStackCallBLAS("LAPACKhetrf",LAPACKhetrf_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&mat->lfwork,&info));
666a49dc2a2SStefano Zampini #endif
667a49dc2a2SStefano Zampini   } else { /* symmetric case */
668a49dc2a2SStefano Zampini     if (!mat->pivots) {
669a49dc2a2SStefano Zampini       ierr = PetscMalloc1(A->rmap->n,&mat->pivots);CHKERRQ(ierr);
670a49dc2a2SStefano Zampini       ierr = PetscLogObjectMemory((PetscObject)A,A->rmap->n*sizeof(PetscBLASInt));CHKERRQ(ierr);
671a49dc2a2SStefano Zampini     }
672a49dc2a2SStefano Zampini     if (!mat->fwork) {
673a49dc2a2SStefano Zampini       PetscScalar dummy;
674a49dc2a2SStefano Zampini 
675a49dc2a2SStefano Zampini       mat->lfwork = -1;
676a49dc2a2SStefano Zampini       PetscStackCallBLAS("LAPACKsytrf",LAPACKsytrf_("L",&n,mat->v,&mat->lda,mat->pivots,&dummy,&mat->lfwork,&info));
677a49dc2a2SStefano Zampini       mat->lfwork = (PetscInt)PetscRealPart(dummy);
678a49dc2a2SStefano Zampini       ierr = PetscMalloc1(mat->lfwork,&mat->fwork);CHKERRQ(ierr);
679a49dc2a2SStefano Zampini       ierr = PetscLogObjectMemory((PetscObject)A,mat->lfwork*sizeof(PetscBLASInt));CHKERRQ(ierr);
680a49dc2a2SStefano Zampini     }
681a49dc2a2SStefano Zampini     PetscStackCallBLAS("LAPACKsytrf",LAPACKsytrf_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&mat->lfwork,&info));
682a49dc2a2SStefano Zampini   }
683e32f2f54SBarry Smith   if (info) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_MAT_CH_ZRPVT,"Bad factorization: zero pivot in row %D",(PetscInt)info-1);
6848208b9aeSStefano Zampini 
685db4efbfdSBarry Smith   A->ops->solve             = MatSolve_SeqDense;
6868208b9aeSStefano Zampini   A->ops->matsolve          = MatMatSolve_SeqDense;
687db4efbfdSBarry Smith   A->ops->solvetranspose    = MatSolveTranspose_SeqDense;
688db4efbfdSBarry Smith   A->ops->solveadd          = MatSolveAdd_SeqDense;
689db4efbfdSBarry Smith   A->ops->solvetransposeadd = MatSolveTransposeAdd_SeqDense;
690d5f3da31SBarry Smith   A->factortype             = MAT_FACTOR_CHOLESKY;
6912205254eSKarl Rupp 
692f6224b95SHong Zhang   ierr = PetscFree(A->solvertype);CHKERRQ(ierr);
693f6224b95SHong Zhang   ierr = PetscStrallocpy(MATSOLVERPETSC,&A->solvertype);CHKERRQ(ierr);
694f6224b95SHong Zhang 
695eb3f19e4SBarry Smith   ierr = PetscLogFlops((1.0*A->cmap->n*A->cmap->n*A->cmap->n)/3.0);CHKERRQ(ierr);
696db4efbfdSBarry Smith #endif
697db4efbfdSBarry Smith   PetscFunctionReturn(0);
698db4efbfdSBarry Smith }
699db4efbfdSBarry Smith 
700db4efbfdSBarry Smith 
7010481f469SBarry Smith PetscErrorCode MatCholeskyFactorNumeric_SeqDense(Mat fact,Mat A,const MatFactorInfo *info_dummy)
702db4efbfdSBarry Smith {
703db4efbfdSBarry Smith   PetscErrorCode ierr;
704db4efbfdSBarry Smith   MatFactorInfo  info;
705db4efbfdSBarry Smith 
706db4efbfdSBarry Smith   PetscFunctionBegin;
707db4efbfdSBarry Smith   info.fill = 1.0;
7082205254eSKarl Rupp 
709c3ef05f6SHong Zhang   ierr = MatDuplicateNoCreate_SeqDense(fact,A,MAT_COPY_VALUES);CHKERRQ(ierr);
710719d5645SBarry Smith   ierr = MatCholeskyFactor_SeqDense(fact,0,&info);CHKERRQ(ierr);
711db4efbfdSBarry Smith   PetscFunctionReturn(0);
712db4efbfdSBarry Smith }
713db4efbfdSBarry Smith 
714e0877f53SBarry Smith static PetscErrorCode MatCholeskyFactorSymbolic_SeqDense(Mat fact,Mat A,IS row,const MatFactorInfo *info)
715db4efbfdSBarry Smith {
716db4efbfdSBarry Smith   PetscFunctionBegin;
717c3ef05f6SHong Zhang   fact->assembled                  = PETSC_TRUE;
7181bbcc794SSatish Balay   fact->preallocated               = PETSC_TRUE;
719719d5645SBarry Smith   fact->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqDense;
720bd443b22SStefano Zampini   fact->ops->solve                 = MatSolve_SeqDense;
721bd443b22SStefano Zampini   fact->ops->matsolve              = MatMatSolve_SeqDense;
722bd443b22SStefano Zampini   fact->ops->solvetranspose        = MatSolveTranspose_SeqDense;
723bd443b22SStefano Zampini   fact->ops->solveadd              = MatSolveAdd_SeqDense;
724bd443b22SStefano Zampini   fact->ops->solvetransposeadd     = MatSolveTransposeAdd_SeqDense;
725db4efbfdSBarry Smith   PetscFunctionReturn(0);
726db4efbfdSBarry Smith }
727db4efbfdSBarry Smith 
728e0877f53SBarry Smith static PetscErrorCode MatLUFactorSymbolic_SeqDense(Mat fact,Mat A,IS row,IS col,const MatFactorInfo *info)
729db4efbfdSBarry Smith {
730db4efbfdSBarry Smith   PetscFunctionBegin;
731b66fe19dSMatthew G Knepley   fact->preallocated           = PETSC_TRUE;
732c3ef05f6SHong Zhang   fact->assembled              = PETSC_TRUE;
733719d5645SBarry Smith   fact->ops->lufactornumeric   = MatLUFactorNumeric_SeqDense;
734bd443b22SStefano Zampini   fact->ops->solve             = MatSolve_SeqDense;
735bd443b22SStefano Zampini   fact->ops->matsolve          = MatMatSolve_SeqDense;
736bd443b22SStefano Zampini   fact->ops->solvetranspose    = MatSolveTranspose_SeqDense;
737bd443b22SStefano Zampini   fact->ops->solveadd          = MatSolveAdd_SeqDense;
738bd443b22SStefano Zampini   fact->ops->solvetransposeadd = MatSolveTransposeAdd_SeqDense;
739db4efbfdSBarry Smith   PetscFunctionReturn(0);
740db4efbfdSBarry Smith }
741db4efbfdSBarry Smith 
742cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatGetFactor_seqdense_petsc(Mat A,MatFactorType ftype,Mat *fact)
743db4efbfdSBarry Smith {
744db4efbfdSBarry Smith   PetscErrorCode ierr;
745db4efbfdSBarry Smith 
746db4efbfdSBarry Smith   PetscFunctionBegin;
747ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)A),fact);CHKERRQ(ierr);
748db4efbfdSBarry Smith   ierr = MatSetSizes(*fact,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n);CHKERRQ(ierr);
749db4efbfdSBarry Smith   ierr = MatSetType(*fact,((PetscObject)A)->type_name);CHKERRQ(ierr);
750db4efbfdSBarry Smith   if (ftype == MAT_FACTOR_LU) {
751db4efbfdSBarry Smith     (*fact)->ops->lufactorsymbolic = MatLUFactorSymbolic_SeqDense;
752db4efbfdSBarry Smith   } else {
753db4efbfdSBarry Smith     (*fact)->ops->choleskyfactorsymbolic = MatCholeskyFactorSymbolic_SeqDense;
754db4efbfdSBarry Smith   }
755d5f3da31SBarry Smith   (*fact)->factortype = ftype;
75600c67f3bSHong Zhang 
75700c67f3bSHong Zhang   ierr = PetscFree((*fact)->solvertype);CHKERRQ(ierr);
75800c67f3bSHong Zhang   ierr = PetscStrallocpy(MATSOLVERPETSC,&(*fact)->solvertype);CHKERRQ(ierr);
759db4efbfdSBarry Smith   PetscFunctionReturn(0);
760db4efbfdSBarry Smith }
761db4efbfdSBarry Smith 
762289bc588SBarry Smith /* ------------------------------------------------------------------*/
763e0877f53SBarry Smith static PetscErrorCode MatSOR_SeqDense(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal shift,PetscInt its,PetscInt lits,Vec xx)
764289bc588SBarry Smith {
765c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
766d9ca1df4SBarry Smith   PetscScalar       *x,*v = mat->v,zero = 0.0,xt;
767d9ca1df4SBarry Smith   const PetscScalar *b;
768dfbe8321SBarry Smith   PetscErrorCode    ierr;
769d0f46423SBarry Smith   PetscInt          m = A->rmap->n,i;
770c5df96a5SBarry Smith   PetscBLASInt      o = 1,bm;
771289bc588SBarry Smith 
7723a40ed3dSBarry Smith   PetscFunctionBegin;
773422a814eSBarry Smith   if (shift == -1) shift = 0.0; /* negative shift indicates do not error on zero diagonal; this code never zeros on zero diagonal */
774c5df96a5SBarry Smith   ierr = PetscBLASIntCast(m,&bm);CHKERRQ(ierr);
775289bc588SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
77671044d3cSBarry Smith     /* this is a hack fix, should have another version without the second BLASdot */
7772dcb1b2aSMatthew Knepley     ierr = VecSet(xx,zero);CHKERRQ(ierr);
778289bc588SBarry Smith   }
7791ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
780d9ca1df4SBarry Smith   ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
781b965ef7fSBarry Smith   its  = its*lits;
782e32f2f54SBarry Smith   if (its <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
783289bc588SBarry Smith   while (its--) {
784fccaa45eSBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) {
785289bc588SBarry Smith       for (i=0; i<m; i++) {
7868b83055fSJed Brown         PetscStackCallBLAS("BLASdot",xt   = b[i] - BLASdot_(&bm,v+i,&bm,x,&o));
78755a1b374SBarry Smith         x[i] = (1. - omega)*x[i] + omega*(xt+v[i + i*m]*x[i])/(v[i + i*m]+shift);
788289bc588SBarry Smith       }
789289bc588SBarry Smith     }
790fccaa45eSBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
791289bc588SBarry Smith       for (i=m-1; i>=0; i--) {
7928b83055fSJed Brown         PetscStackCallBLAS("BLASdot",xt   = b[i] - BLASdot_(&bm,v+i,&bm,x,&o));
79355a1b374SBarry Smith         x[i] = (1. - omega)*x[i] + omega*(xt+v[i + i*m]*x[i])/(v[i + i*m]+shift);
794289bc588SBarry Smith       }
795289bc588SBarry Smith     }
796289bc588SBarry Smith   }
797d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
7981ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
7993a40ed3dSBarry Smith   PetscFunctionReturn(0);
800289bc588SBarry Smith }
801289bc588SBarry Smith 
802289bc588SBarry Smith /* -----------------------------------------------------------------*/
803cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat A,Vec xx,Vec yy)
804289bc588SBarry Smith {
805c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
806d9ca1df4SBarry Smith   const PetscScalar *v   = mat->v,*x;
807d9ca1df4SBarry Smith   PetscScalar       *y;
808dfbe8321SBarry Smith   PetscErrorCode    ierr;
8090805154bSBarry Smith   PetscBLASInt      m, n,_One=1;
810ea709b57SSatish Balay   PetscScalar       _DOne=1.0,_DZero=0.0;
8113a40ed3dSBarry Smith 
8123a40ed3dSBarry Smith   PetscFunctionBegin;
813c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
814c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
815d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
8161ebc52fbSHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
817*5ac36cfcSBarry Smith   if (!A->rmap->n || !A->cmap->n) {
818*5ac36cfcSBarry Smith     PetscBLASInt i;
819*5ac36cfcSBarry Smith     for (i=0; i<n; i++) y[i] = 0.0;
820*5ac36cfcSBarry Smith   } else {
8218b83055fSJed Brown     PetscStackCallBLAS("BLASgemv",BLASgemv_("T",&m,&n,&_DOne,v,&mat->lda,x,&_One,&_DZero,y,&_One));
822*5ac36cfcSBarry Smith     ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n - A->cmap->n);CHKERRQ(ierr);
823*5ac36cfcSBarry Smith   }
824d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
8251ebc52fbSHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
8263a40ed3dSBarry Smith   PetscFunctionReturn(0);
827289bc588SBarry Smith }
828800995b7SMatthew Knepley 
829cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat A,Vec xx,Vec yy)
830289bc588SBarry Smith {
831c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
832d9ca1df4SBarry Smith   PetscScalar       *y,_DOne=1.0,_DZero=0.0;
833dfbe8321SBarry Smith   PetscErrorCode    ierr;
8340805154bSBarry Smith   PetscBLASInt      m, n, _One=1;
835d9ca1df4SBarry Smith   const PetscScalar *v = mat->v,*x;
8363a40ed3dSBarry Smith 
8373a40ed3dSBarry Smith   PetscFunctionBegin;
838c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
839c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
840d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
8411ebc52fbSHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
842*5ac36cfcSBarry Smith   if (!A->rmap->n || !A->cmap->n) {
843*5ac36cfcSBarry Smith     PetscBLASInt i;
844*5ac36cfcSBarry Smith     for (i=0; i<m; i++) y[i] = 0.0;
845*5ac36cfcSBarry Smith   } else {
8468b83055fSJed Brown     PetscStackCallBLAS("BLASgemv",BLASgemv_("N",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DZero,y,&_One));
847*5ac36cfcSBarry Smith     ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n - A->rmap->n);CHKERRQ(ierr);
848*5ac36cfcSBarry Smith   }
849d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
8501ebc52fbSHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
8513a40ed3dSBarry Smith   PetscFunctionReturn(0);
852289bc588SBarry Smith }
8536ee01492SSatish Balay 
854cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy)
855289bc588SBarry Smith {
856c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
857d9ca1df4SBarry Smith   const PetscScalar *v = mat->v,*x;
858d9ca1df4SBarry Smith   PetscScalar       *y,_DOne=1.0;
859dfbe8321SBarry Smith   PetscErrorCode    ierr;
8600805154bSBarry Smith   PetscBLASInt      m, n, _One=1;
8613a40ed3dSBarry Smith 
8623a40ed3dSBarry Smith   PetscFunctionBegin;
863c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
864c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
865d0f46423SBarry Smith   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
866600d6d0bSBarry Smith   if (zz != yy) {ierr = VecCopy(zz,yy);CHKERRQ(ierr);}
867d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
8681ebc52fbSHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
8698b83055fSJed Brown   PetscStackCallBLAS("BLASgemv",BLASgemv_("N",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DOne,y,&_One));
870d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
8711ebc52fbSHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
872dc0b31edSSatish Balay   ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n);CHKERRQ(ierr);
8733a40ed3dSBarry Smith   PetscFunctionReturn(0);
874289bc588SBarry Smith }
8756ee01492SSatish Balay 
876e0877f53SBarry Smith static PetscErrorCode MatMultTransposeAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy)
877289bc588SBarry Smith {
878c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
879d9ca1df4SBarry Smith   const PetscScalar *v = mat->v,*x;
880d9ca1df4SBarry Smith   PetscScalar       *y;
881dfbe8321SBarry Smith   PetscErrorCode    ierr;
8820805154bSBarry Smith   PetscBLASInt      m, n, _One=1;
88387828ca2SBarry Smith   PetscScalar       _DOne=1.0;
8843a40ed3dSBarry Smith 
8853a40ed3dSBarry Smith   PetscFunctionBegin;
886c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
887c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr);
888d0f46423SBarry Smith   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
889600d6d0bSBarry Smith   if (zz != yy) {ierr = VecCopy(zz,yy);CHKERRQ(ierr);}
890d9ca1df4SBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
8911ebc52fbSHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
8928b83055fSJed Brown   PetscStackCallBLAS("BLASgemv",BLASgemv_("T",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DOne,y,&_One));
893d9ca1df4SBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
8941ebc52fbSHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
895dc0b31edSSatish Balay   ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n);CHKERRQ(ierr);
8963a40ed3dSBarry Smith   PetscFunctionReturn(0);
897289bc588SBarry Smith }
898289bc588SBarry Smith 
899289bc588SBarry Smith /* -----------------------------------------------------------------*/
900e0877f53SBarry Smith static PetscErrorCode MatGetRow_SeqDense(Mat A,PetscInt row,PetscInt *ncols,PetscInt **cols,PetscScalar **vals)
901289bc588SBarry Smith {
902c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
90387828ca2SBarry Smith   PetscScalar    *v;
9046849ba73SBarry Smith   PetscErrorCode ierr;
90513f74950SBarry Smith   PetscInt       i;
90667e560aaSBarry Smith 
9073a40ed3dSBarry Smith   PetscFunctionBegin;
908d0f46423SBarry Smith   *ncols = A->cmap->n;
909289bc588SBarry Smith   if (cols) {
910854ce69bSBarry Smith     ierr = PetscMalloc1(A->cmap->n+1,cols);CHKERRQ(ierr);
911d0f46423SBarry Smith     for (i=0; i<A->cmap->n; i++) (*cols)[i] = i;
912289bc588SBarry Smith   }
913289bc588SBarry Smith   if (vals) {
914854ce69bSBarry Smith     ierr = PetscMalloc1(A->cmap->n+1,vals);CHKERRQ(ierr);
915289bc588SBarry Smith     v    = mat->v + row;
916d0f46423SBarry Smith     for (i=0; i<A->cmap->n; i++) {(*vals)[i] = *v; v += mat->lda;}
917289bc588SBarry Smith   }
9183a40ed3dSBarry Smith   PetscFunctionReturn(0);
919289bc588SBarry Smith }
9206ee01492SSatish Balay 
921e0877f53SBarry Smith static PetscErrorCode MatRestoreRow_SeqDense(Mat A,PetscInt row,PetscInt *ncols,PetscInt **cols,PetscScalar **vals)
922289bc588SBarry Smith {
923dfbe8321SBarry Smith   PetscErrorCode ierr;
9246e111a19SKarl Rupp 
925606d414cSSatish Balay   PetscFunctionBegin;
926606d414cSSatish Balay   if (cols) {ierr = PetscFree(*cols);CHKERRQ(ierr);}
927606d414cSSatish Balay   if (vals) {ierr = PetscFree(*vals);CHKERRQ(ierr); }
9283a40ed3dSBarry Smith   PetscFunctionReturn(0);
929289bc588SBarry Smith }
930289bc588SBarry Smith /* ----------------------------------------------------------------*/
931e0877f53SBarry Smith static PetscErrorCode MatSetValues_SeqDense(Mat A,PetscInt m,const PetscInt indexm[],PetscInt n,const PetscInt indexn[],const PetscScalar v[],InsertMode addv)
932289bc588SBarry Smith {
933c0bbcb79SLois Curfman McInnes   Mat_SeqDense *mat = (Mat_SeqDense*)A->data;
93413f74950SBarry Smith   PetscInt     i,j,idx=0;
935d6dfbf8fSBarry Smith 
9363a40ed3dSBarry Smith   PetscFunctionBegin;
937289bc588SBarry Smith   if (!mat->roworiented) {
938dbb450caSBarry Smith     if (addv == INSERT_VALUES) {
939289bc588SBarry Smith       for (j=0; j<n; j++) {
940cddbea37SSatish Balay         if (indexn[j] < 0) {idx += m; continue;}
9412515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
942e32f2f54SBarry Smith         if (indexn[j] >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1);
94358804f6dSBarry Smith #endif
944289bc588SBarry Smith         for (i=0; i<m; i++) {
945cddbea37SSatish Balay           if (indexm[i] < 0) {idx++; continue;}
9462515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
947e32f2f54SBarry Smith           if (indexm[i] >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1);
94858804f6dSBarry Smith #endif
949cddbea37SSatish Balay           mat->v[indexn[j]*mat->lda + indexm[i]] = v[idx++];
950289bc588SBarry Smith         }
951289bc588SBarry Smith       }
9523a40ed3dSBarry Smith     } else {
953289bc588SBarry Smith       for (j=0; j<n; j++) {
954cddbea37SSatish Balay         if (indexn[j] < 0) {idx += m; continue;}
9552515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
956e32f2f54SBarry Smith         if (indexn[j] >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1);
95758804f6dSBarry Smith #endif
958289bc588SBarry Smith         for (i=0; i<m; i++) {
959cddbea37SSatish Balay           if (indexm[i] < 0) {idx++; continue;}
9602515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
961e32f2f54SBarry Smith           if (indexm[i] >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1);
96258804f6dSBarry Smith #endif
963cddbea37SSatish Balay           mat->v[indexn[j]*mat->lda + indexm[i]] += v[idx++];
964289bc588SBarry Smith         }
965289bc588SBarry Smith       }
966289bc588SBarry Smith     }
9673a40ed3dSBarry Smith   } else {
968dbb450caSBarry Smith     if (addv == INSERT_VALUES) {
969e8d4e0b9SBarry Smith       for (i=0; i<m; i++) {
970cddbea37SSatish Balay         if (indexm[i] < 0) { idx += n; continue;}
9712515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
972e32f2f54SBarry Smith         if (indexm[i] >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1);
97358804f6dSBarry Smith #endif
974e8d4e0b9SBarry Smith         for (j=0; j<n; j++) {
975cddbea37SSatish Balay           if (indexn[j] < 0) { idx++; continue;}
9762515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
977e32f2f54SBarry Smith           if (indexn[j] >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1);
97858804f6dSBarry Smith #endif
979cddbea37SSatish Balay           mat->v[indexn[j]*mat->lda + indexm[i]] = v[idx++];
980e8d4e0b9SBarry Smith         }
981e8d4e0b9SBarry Smith       }
9823a40ed3dSBarry Smith     } else {
983289bc588SBarry Smith       for (i=0; i<m; i++) {
984cddbea37SSatish Balay         if (indexm[i] < 0) { idx += n; continue;}
9852515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
986e32f2f54SBarry Smith         if (indexm[i] >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1);
98758804f6dSBarry Smith #endif
988289bc588SBarry Smith         for (j=0; j<n; j++) {
989cddbea37SSatish Balay           if (indexn[j] < 0) { idx++; continue;}
9902515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
991e32f2f54SBarry Smith           if (indexn[j] >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1);
99258804f6dSBarry Smith #endif
993cddbea37SSatish Balay           mat->v[indexn[j]*mat->lda + indexm[i]] += v[idx++];
994289bc588SBarry Smith         }
995289bc588SBarry Smith       }
996289bc588SBarry Smith     }
997e8d4e0b9SBarry Smith   }
9983a40ed3dSBarry Smith   PetscFunctionReturn(0);
999289bc588SBarry Smith }
1000e8d4e0b9SBarry Smith 
1001e0877f53SBarry Smith static PetscErrorCode MatGetValues_SeqDense(Mat A,PetscInt m,const PetscInt indexm[],PetscInt n,const PetscInt indexn[],PetscScalar v[])
1002ae80bb75SLois Curfman McInnes {
1003ae80bb75SLois Curfman McInnes   Mat_SeqDense *mat = (Mat_SeqDense*)A->data;
100413f74950SBarry Smith   PetscInt     i,j;
1005ae80bb75SLois Curfman McInnes 
10063a40ed3dSBarry Smith   PetscFunctionBegin;
1007ae80bb75SLois Curfman McInnes   /* row-oriented output */
1008ae80bb75SLois Curfman McInnes   for (i=0; i<m; i++) {
100997e567efSBarry Smith     if (indexm[i] < 0) {v += n;continue;}
1010e32f2f54SBarry Smith     if (indexm[i] >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D requested larger than number rows %D",indexm[i],A->rmap->n);
1011ae80bb75SLois Curfman McInnes     for (j=0; j<n; j++) {
10126f31f424SBarry Smith       if (indexn[j] < 0) {v++; continue;}
1013e32f2f54SBarry Smith       if (indexn[j] >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column %D requested larger than number columns %D",indexn[j],A->cmap->n);
101497e567efSBarry Smith       *v++ = mat->v[indexn[j]*mat->lda + indexm[i]];
1015ae80bb75SLois Curfman McInnes     }
1016ae80bb75SLois Curfman McInnes   }
10173a40ed3dSBarry Smith   PetscFunctionReturn(0);
1018ae80bb75SLois Curfman McInnes }
1019ae80bb75SLois Curfman McInnes 
1020289bc588SBarry Smith /* -----------------------------------------------------------------*/
1021289bc588SBarry Smith 
1022e0877f53SBarry Smith static PetscErrorCode MatLoad_SeqDense(Mat newmat,PetscViewer viewer)
1023aabbc4fbSShri Abhyankar {
1024aabbc4fbSShri Abhyankar   Mat_SeqDense   *a;
1025aabbc4fbSShri Abhyankar   PetscErrorCode ierr;
1026aabbc4fbSShri Abhyankar   PetscInt       *scols,i,j,nz,header[4];
1027aabbc4fbSShri Abhyankar   int            fd;
1028aabbc4fbSShri Abhyankar   PetscMPIInt    size;
1029aabbc4fbSShri Abhyankar   PetscInt       *rowlengths = 0,M,N,*cols,grows,gcols;
1030aabbc4fbSShri Abhyankar   PetscScalar    *vals,*svals,*v,*w;
1031ce94432eSBarry Smith   MPI_Comm       comm;
1032aabbc4fbSShri Abhyankar 
1033aabbc4fbSShri Abhyankar   PetscFunctionBegin;
1034c98fd787SBarry Smith   /* force binary viewer to load .info file if it has not yet done so */
1035c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
1036ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
1037aabbc4fbSShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1038aabbc4fbSShri Abhyankar   if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"view must have one processor");
1039aabbc4fbSShri Abhyankar   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
1040aabbc4fbSShri Abhyankar   ierr = PetscBinaryRead(fd,header,4,PETSC_INT);CHKERRQ(ierr);
1041aabbc4fbSShri Abhyankar   if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Not matrix object");
1042aabbc4fbSShri Abhyankar   M = header[1]; N = header[2]; nz = header[3];
1043aabbc4fbSShri Abhyankar 
1044aabbc4fbSShri Abhyankar   /* set global size if not set already*/
1045aabbc4fbSShri Abhyankar   if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) {
1046aabbc4fbSShri Abhyankar     ierr = MatSetSizes(newmat,M,N,M,N);CHKERRQ(ierr);
1047aabbc4fbSShri Abhyankar   } else {
1048aabbc4fbSShri Abhyankar     /* if sizes and type are already set, check if the vector global sizes are correct */
1049aabbc4fbSShri Abhyankar     ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr);
1050aabbc4fbSShri Abhyankar     if (M != grows ||  N != gcols) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different length (%d, %d) than the input matrix (%d, %d)",M,N,grows,gcols);
1051aabbc4fbSShri Abhyankar   }
1052e6324fbbSBarry Smith   a = (Mat_SeqDense*)newmat->data;
1053e6324fbbSBarry Smith   if (!a->user_alloc) {
10540298fd71SBarry Smith     ierr = MatSeqDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr);
1055e6324fbbSBarry Smith   }
1056aabbc4fbSShri Abhyankar 
1057aabbc4fbSShri Abhyankar   if (nz == MATRIX_BINARY_FORMAT_DENSE) { /* matrix in file is dense */
1058aabbc4fbSShri Abhyankar     a = (Mat_SeqDense*)newmat->data;
1059aabbc4fbSShri Abhyankar     v = a->v;
1060aabbc4fbSShri Abhyankar     /* Allocate some temp space to read in the values and then flip them
1061aabbc4fbSShri Abhyankar        from row major to column major */
1062854ce69bSBarry Smith     ierr = PetscMalloc1(M*N > 0 ? M*N : 1,&w);CHKERRQ(ierr);
1063aabbc4fbSShri Abhyankar     /* read in nonzero values */
1064aabbc4fbSShri Abhyankar     ierr = PetscBinaryRead(fd,w,M*N,PETSC_SCALAR);CHKERRQ(ierr);
1065aabbc4fbSShri Abhyankar     /* now flip the values and store them in the matrix*/
1066aabbc4fbSShri Abhyankar     for (j=0; j<N; j++) {
1067aabbc4fbSShri Abhyankar       for (i=0; i<M; i++) {
1068aabbc4fbSShri Abhyankar         *v++ =w[i*N+j];
1069aabbc4fbSShri Abhyankar       }
1070aabbc4fbSShri Abhyankar     }
1071aabbc4fbSShri Abhyankar     ierr = PetscFree(w);CHKERRQ(ierr);
1072aabbc4fbSShri Abhyankar   } else {
1073aabbc4fbSShri Abhyankar     /* read row lengths */
1074854ce69bSBarry Smith     ierr = PetscMalloc1(M+1,&rowlengths);CHKERRQ(ierr);
1075aabbc4fbSShri Abhyankar     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
1076aabbc4fbSShri Abhyankar 
1077aabbc4fbSShri Abhyankar     a = (Mat_SeqDense*)newmat->data;
1078aabbc4fbSShri Abhyankar     v = a->v;
1079aabbc4fbSShri Abhyankar 
1080aabbc4fbSShri Abhyankar     /* read column indices and nonzeros */
1081854ce69bSBarry Smith     ierr = PetscMalloc1(nz+1,&scols);CHKERRQ(ierr);
1082aabbc4fbSShri Abhyankar     cols = scols;
1083aabbc4fbSShri Abhyankar     ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
1084854ce69bSBarry Smith     ierr = PetscMalloc1(nz+1,&svals);CHKERRQ(ierr);
1085aabbc4fbSShri Abhyankar     vals = svals;
1086aabbc4fbSShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
1087aabbc4fbSShri Abhyankar 
1088aabbc4fbSShri Abhyankar     /* insert into matrix */
1089aabbc4fbSShri Abhyankar     for (i=0; i<M; i++) {
1090aabbc4fbSShri Abhyankar       for (j=0; j<rowlengths[i]; j++) v[i+M*scols[j]] = svals[j];
1091aabbc4fbSShri Abhyankar       svals += rowlengths[i]; scols += rowlengths[i];
1092aabbc4fbSShri Abhyankar     }
1093aabbc4fbSShri Abhyankar     ierr = PetscFree(vals);CHKERRQ(ierr);
1094aabbc4fbSShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
1095aabbc4fbSShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
1096aabbc4fbSShri Abhyankar   }
1097aabbc4fbSShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1098aabbc4fbSShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1099aabbc4fbSShri Abhyankar   PetscFunctionReturn(0);
1100aabbc4fbSShri Abhyankar }
1101aabbc4fbSShri Abhyankar 
11026849ba73SBarry Smith static PetscErrorCode MatView_SeqDense_ASCII(Mat A,PetscViewer viewer)
1103289bc588SBarry Smith {
1104932b0c3eSLois Curfman McInnes   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
1105dfbe8321SBarry Smith   PetscErrorCode    ierr;
110613f74950SBarry Smith   PetscInt          i,j;
11072dcb1b2aSMatthew Knepley   const char        *name;
110887828ca2SBarry Smith   PetscScalar       *v;
1109f3ef73ceSBarry Smith   PetscViewerFormat format;
11105f481a85SSatish Balay #if defined(PETSC_USE_COMPLEX)
1111ace3abfcSBarry Smith   PetscBool         allreal = PETSC_TRUE;
11125f481a85SSatish Balay #endif
1113932b0c3eSLois Curfman McInnes 
11143a40ed3dSBarry Smith   PetscFunctionBegin;
1115b0a32e0cSBarry Smith   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1116456192e2SBarry Smith   if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
11173a40ed3dSBarry Smith     PetscFunctionReturn(0);  /* do nothing for now */
1118fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_COMMON) {
1119d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
1120d0f46423SBarry Smith     for (i=0; i<A->rmap->n; i++) {
112144cd7ae7SLois Curfman McInnes       v    = a->v + i;
112277431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr);
1123d0f46423SBarry Smith       for (j=0; j<A->cmap->n; j++) {
1124aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
1125329f5518SBarry Smith         if (PetscRealPart(*v) != 0.0 && PetscImaginaryPart(*v) != 0.0) {
112657622a8eSBarry Smith           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",j,(double)PetscRealPart(*v),(double)PetscImaginaryPart(*v));CHKERRQ(ierr);
1127329f5518SBarry Smith         } else if (PetscRealPart(*v)) {
112857622a8eSBarry Smith           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",j,(double)PetscRealPart(*v));CHKERRQ(ierr);
11296831982aSBarry Smith         }
113080cd9d93SLois Curfman McInnes #else
11316831982aSBarry Smith         if (*v) {
113257622a8eSBarry Smith           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",j,(double)*v);CHKERRQ(ierr);
11336831982aSBarry Smith         }
113480cd9d93SLois Curfman McInnes #endif
11351b807ce4Svictorle         v += a->lda;
113680cd9d93SLois Curfman McInnes       }
1137b0a32e0cSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
113880cd9d93SLois Curfman McInnes     }
1139d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
11403a40ed3dSBarry Smith   } else {
1141d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
1142aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
114347989497SBarry Smith     /* determine if matrix has all real values */
114447989497SBarry Smith     v = a->v;
1145d0f46423SBarry Smith     for (i=0; i<A->rmap->n*A->cmap->n; i++) {
1146ffac6cdbSBarry Smith       if (PetscImaginaryPart(v[i])) { allreal = PETSC_FALSE; break;}
114747989497SBarry Smith     }
114847989497SBarry Smith #endif
1149fb9695e5SSatish Balay     if (format == PETSC_VIEWER_ASCII_MATLAB) {
11503a7fca6bSBarry Smith       ierr = PetscObjectGetName((PetscObject)A,&name);CHKERRQ(ierr);
1151d0f46423SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"%% Size = %D %D \n",A->rmap->n,A->cmap->n);CHKERRQ(ierr);
1152d0f46423SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"%s = zeros(%D,%D);\n",name,A->rmap->n,A->cmap->n);CHKERRQ(ierr);
1153fb9695e5SSatish Balay       ierr = PetscViewerASCIIPrintf(viewer,"%s = [\n",name);CHKERRQ(ierr);
1154ffac6cdbSBarry Smith     }
1155ffac6cdbSBarry Smith 
1156d0f46423SBarry Smith     for (i=0; i<A->rmap->n; i++) {
1157932b0c3eSLois Curfman McInnes       v = a->v + i;
1158d0f46423SBarry Smith       for (j=0; j<A->cmap->n; j++) {
1159aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
116047989497SBarry Smith         if (allreal) {
1161c61cd2faSJed Brown           ierr = PetscViewerASCIIPrintf(viewer,"%18.16e ",(double)PetscRealPart(*v));CHKERRQ(ierr);
116247989497SBarry Smith         } else {
1163c61cd2faSJed Brown           ierr = PetscViewerASCIIPrintf(viewer,"%18.16e + %18.16ei ",(double)PetscRealPart(*v),(double)PetscImaginaryPart(*v));CHKERRQ(ierr);
116447989497SBarry Smith         }
1165289bc588SBarry Smith #else
1166c61cd2faSJed Brown         ierr = PetscViewerASCIIPrintf(viewer,"%18.16e ",(double)*v);CHKERRQ(ierr);
1167289bc588SBarry Smith #endif
11681b807ce4Svictorle         v += a->lda;
1169289bc588SBarry Smith       }
1170b0a32e0cSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
1171289bc588SBarry Smith     }
1172fb9695e5SSatish Balay     if (format == PETSC_VIEWER_ASCII_MATLAB) {
1173b0a32e0cSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"];\n");CHKERRQ(ierr);
1174ffac6cdbSBarry Smith     }
1175d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
1176da3a660dSBarry Smith   }
1177b0a32e0cSBarry Smith   ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
11783a40ed3dSBarry Smith   PetscFunctionReturn(0);
1179289bc588SBarry Smith }
1180289bc588SBarry Smith 
11816849ba73SBarry Smith static PetscErrorCode MatView_SeqDense_Binary(Mat A,PetscViewer viewer)
1182932b0c3eSLois Curfman McInnes {
1183932b0c3eSLois Curfman McInnes   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
11846849ba73SBarry Smith   PetscErrorCode    ierr;
118513f74950SBarry Smith   int               fd;
1186d0f46423SBarry Smith   PetscInt          ict,j,n = A->cmap->n,m = A->rmap->n,i,*col_lens,nz = m*n;
1187f4403165SShri Abhyankar   PetscScalar       *v,*anonz,*vals;
1188f4403165SShri Abhyankar   PetscViewerFormat format;
1189932b0c3eSLois Curfman McInnes 
11903a40ed3dSBarry Smith   PetscFunctionBegin;
1191b0a32e0cSBarry Smith   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
119290ace30eSBarry Smith 
1193f4403165SShri Abhyankar   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1194f4403165SShri Abhyankar   if (format == PETSC_VIEWER_NATIVE) {
1195f4403165SShri Abhyankar     /* store the matrix as a dense matrix */
1196785e854fSJed Brown     ierr = PetscMalloc1(4,&col_lens);CHKERRQ(ierr);
11972205254eSKarl Rupp 
1198f4403165SShri Abhyankar     col_lens[0] = MAT_FILE_CLASSID;
1199f4403165SShri Abhyankar     col_lens[1] = m;
1200f4403165SShri Abhyankar     col_lens[2] = n;
1201f4403165SShri Abhyankar     col_lens[3] = MATRIX_BINARY_FORMAT_DENSE;
12022205254eSKarl Rupp 
1203f4403165SShri Abhyankar     ierr = PetscBinaryWrite(fd,col_lens,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1204f4403165SShri Abhyankar     ierr = PetscFree(col_lens);CHKERRQ(ierr);
1205f4403165SShri Abhyankar 
1206f4403165SShri Abhyankar     /* write out matrix, by rows */
1207854ce69bSBarry Smith     ierr = PetscMalloc1(m*n+1,&vals);CHKERRQ(ierr);
1208f4403165SShri Abhyankar     v    = a->v;
1209f4403165SShri Abhyankar     for (j=0; j<n; j++) {
1210f4403165SShri Abhyankar       for (i=0; i<m; i++) {
1211f4403165SShri Abhyankar         vals[j + i*n] = *v++;
1212f4403165SShri Abhyankar       }
1213f4403165SShri Abhyankar     }
1214f4403165SShri Abhyankar     ierr = PetscBinaryWrite(fd,vals,n*m,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr);
1215f4403165SShri Abhyankar     ierr = PetscFree(vals);CHKERRQ(ierr);
1216f4403165SShri Abhyankar   } else {
1217854ce69bSBarry Smith     ierr = PetscMalloc1(4+nz,&col_lens);CHKERRQ(ierr);
12182205254eSKarl Rupp 
12190700a824SBarry Smith     col_lens[0] = MAT_FILE_CLASSID;
1220932b0c3eSLois Curfman McInnes     col_lens[1] = m;
1221932b0c3eSLois Curfman McInnes     col_lens[2] = n;
1222932b0c3eSLois Curfman McInnes     col_lens[3] = nz;
1223932b0c3eSLois Curfman McInnes 
1224932b0c3eSLois Curfman McInnes     /* store lengths of each row and write (including header) to file */
1225932b0c3eSLois Curfman McInnes     for (i=0; i<m; i++) col_lens[4+i] = n;
12266f69ff64SBarry Smith     ierr = PetscBinaryWrite(fd,col_lens,4+m,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1227932b0c3eSLois Curfman McInnes 
1228932b0c3eSLois Curfman McInnes     /* Possibly should write in smaller increments, not whole matrix at once? */
1229932b0c3eSLois Curfman McInnes     /* store column indices (zero start index) */
1230932b0c3eSLois Curfman McInnes     ict = 0;
1231932b0c3eSLois Curfman McInnes     for (i=0; i<m; i++) {
1232932b0c3eSLois Curfman McInnes       for (j=0; j<n; j++) col_lens[ict++] = j;
1233932b0c3eSLois Curfman McInnes     }
12346f69ff64SBarry Smith     ierr = PetscBinaryWrite(fd,col_lens,nz,PETSC_INT,PETSC_FALSE);CHKERRQ(ierr);
1235606d414cSSatish Balay     ierr = PetscFree(col_lens);CHKERRQ(ierr);
1236932b0c3eSLois Curfman McInnes 
1237932b0c3eSLois Curfman McInnes     /* store nonzero values */
1238854ce69bSBarry Smith     ierr = PetscMalloc1(nz+1,&anonz);CHKERRQ(ierr);
1239932b0c3eSLois Curfman McInnes     ict  = 0;
1240932b0c3eSLois Curfman McInnes     for (i=0; i<m; i++) {
1241932b0c3eSLois Curfman McInnes       v = a->v + i;
1242932b0c3eSLois Curfman McInnes       for (j=0; j<n; j++) {
12431b807ce4Svictorle         anonz[ict++] = *v; v += a->lda;
1244932b0c3eSLois Curfman McInnes       }
1245932b0c3eSLois Curfman McInnes     }
12466f69ff64SBarry Smith     ierr = PetscBinaryWrite(fd,anonz,nz,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr);
1247606d414cSSatish Balay     ierr = PetscFree(anonz);CHKERRQ(ierr);
1248f4403165SShri Abhyankar   }
12493a40ed3dSBarry Smith   PetscFunctionReturn(0);
1250932b0c3eSLois Curfman McInnes }
1251932b0c3eSLois Curfman McInnes 
12529804daf3SBarry Smith #include <petscdraw.h>
1253e0877f53SBarry Smith static PetscErrorCode MatView_SeqDense_Draw_Zoom(PetscDraw draw,void *Aa)
1254f1af5d2fSBarry Smith {
1255f1af5d2fSBarry Smith   Mat               A  = (Mat) Aa;
1256f1af5d2fSBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
12576849ba73SBarry Smith   PetscErrorCode    ierr;
1258383922c3SLisandro Dalcin   PetscInt          m  = A->rmap->n,n = A->cmap->n,i,j;
1259383922c3SLisandro Dalcin   int               color = PETSC_DRAW_WHITE;
126087828ca2SBarry Smith   PetscScalar       *v = a->v;
1261b0a32e0cSBarry Smith   PetscViewer       viewer;
1262b05fc000SLisandro Dalcin   PetscReal         xl,yl,xr,yr,x_l,x_r,y_l,y_r;
1263f3ef73ceSBarry Smith   PetscViewerFormat format;
1264f1af5d2fSBarry Smith 
1265f1af5d2fSBarry Smith   PetscFunctionBegin;
1266f1af5d2fSBarry Smith   ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr);
1267b0a32e0cSBarry Smith   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1268b0a32e0cSBarry Smith   ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr);
1269f1af5d2fSBarry Smith 
1270f1af5d2fSBarry Smith   /* Loop over matrix elements drawing boxes */
1271383922c3SLisandro Dalcin 
1272fb9695e5SSatish Balay   if (format != PETSC_VIEWER_DRAW_CONTOUR) {
1273383922c3SLisandro Dalcin     ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr);
1274f1af5d2fSBarry Smith     /* Blue for negative and Red for positive */
1275f1af5d2fSBarry Smith     for (j = 0; j < n; j++) {
1276383922c3SLisandro Dalcin       x_l = j; x_r = x_l + 1.0;
1277f1af5d2fSBarry Smith       for (i = 0; i < m; i++) {
1278f1af5d2fSBarry Smith         y_l = m - i - 1.0;
1279f1af5d2fSBarry Smith         y_r = y_l + 1.0;
1280329f5518SBarry Smith         if (PetscRealPart(v[j*m+i]) >  0.) {
1281b0a32e0cSBarry Smith           color = PETSC_DRAW_RED;
1282329f5518SBarry Smith         } else if (PetscRealPart(v[j*m+i]) <  0.) {
1283b0a32e0cSBarry Smith           color = PETSC_DRAW_BLUE;
1284f1af5d2fSBarry Smith         } else {
1285f1af5d2fSBarry Smith           continue;
1286f1af5d2fSBarry Smith         }
1287b0a32e0cSBarry Smith         ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr);
1288f1af5d2fSBarry Smith       }
1289f1af5d2fSBarry Smith     }
1290383922c3SLisandro Dalcin     ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr);
1291f1af5d2fSBarry Smith   } else {
1292f1af5d2fSBarry Smith     /* use contour shading to indicate magnitude of values */
1293f1af5d2fSBarry Smith     /* first determine max of all nonzero values */
1294b05fc000SLisandro Dalcin     PetscReal minv = 0.0, maxv = 0.0;
1295b05fc000SLisandro Dalcin     PetscDraw popup;
1296b05fc000SLisandro Dalcin 
1297f1af5d2fSBarry Smith     for (i=0; i < m*n; i++) {
1298f1af5d2fSBarry Smith       if (PetscAbsScalar(v[i]) > maxv) maxv = PetscAbsScalar(v[i]);
1299f1af5d2fSBarry Smith     }
1300383922c3SLisandro Dalcin     if (minv >= maxv) maxv = minv + PETSC_SMALL;
1301b0a32e0cSBarry Smith     ierr = PetscDrawGetPopup(draw,&popup);CHKERRQ(ierr);
130245f3bb6eSLisandro Dalcin     ierr = PetscDrawScalePopup(popup,minv,maxv);CHKERRQ(ierr);
1303383922c3SLisandro Dalcin 
1304383922c3SLisandro Dalcin     ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr);
1305f1af5d2fSBarry Smith     for (j=0; j<n; j++) {
1306f1af5d2fSBarry Smith       x_l = j;
1307f1af5d2fSBarry Smith       x_r = x_l + 1.0;
1308f1af5d2fSBarry Smith       for (i=0; i<m; i++) {
1309f1af5d2fSBarry Smith         y_l = m - i - 1.0;
1310f1af5d2fSBarry Smith         y_r = y_l + 1.0;
1311b05fc000SLisandro Dalcin         color = PetscDrawRealToColor(PetscAbsScalar(v[j*m+i]),minv,maxv);
1312b0a32e0cSBarry Smith         ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr);
1313f1af5d2fSBarry Smith       }
1314f1af5d2fSBarry Smith     }
1315383922c3SLisandro Dalcin     ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr);
1316f1af5d2fSBarry Smith   }
1317f1af5d2fSBarry Smith   PetscFunctionReturn(0);
1318f1af5d2fSBarry Smith }
1319f1af5d2fSBarry Smith 
1320e0877f53SBarry Smith static PetscErrorCode MatView_SeqDense_Draw(Mat A,PetscViewer viewer)
1321f1af5d2fSBarry Smith {
1322b0a32e0cSBarry Smith   PetscDraw      draw;
1323ace3abfcSBarry Smith   PetscBool      isnull;
1324329f5518SBarry Smith   PetscReal      xr,yr,xl,yl,h,w;
1325dfbe8321SBarry Smith   PetscErrorCode ierr;
1326f1af5d2fSBarry Smith 
1327f1af5d2fSBarry Smith   PetscFunctionBegin;
1328b0a32e0cSBarry Smith   ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
1329b0a32e0cSBarry Smith   ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
1330abc0a331SBarry Smith   if (isnull) PetscFunctionReturn(0);
1331f1af5d2fSBarry Smith 
1332d0f46423SBarry Smith   xr   = A->cmap->n; yr = A->rmap->n; h = yr/10.0; w = xr/10.0;
1333f1af5d2fSBarry Smith   xr  += w;          yr += h;        xl = -w;     yl = -h;
1334b0a32e0cSBarry Smith   ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr);
1335832b7cebSLisandro Dalcin   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr);
1336b0a32e0cSBarry Smith   ierr = PetscDrawZoom(draw,MatView_SeqDense_Draw_Zoom,A);CHKERRQ(ierr);
13370298fd71SBarry Smith   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",NULL);CHKERRQ(ierr);
1338832b7cebSLisandro Dalcin   ierr = PetscDrawSave(draw);CHKERRQ(ierr);
1339f1af5d2fSBarry Smith   PetscFunctionReturn(0);
1340f1af5d2fSBarry Smith }
1341f1af5d2fSBarry Smith 
1342dfbe8321SBarry Smith PetscErrorCode MatView_SeqDense(Mat A,PetscViewer viewer)
1343932b0c3eSLois Curfman McInnes {
1344dfbe8321SBarry Smith   PetscErrorCode ierr;
1345ace3abfcSBarry Smith   PetscBool      iascii,isbinary,isdraw;
1346932b0c3eSLois Curfman McInnes 
13473a40ed3dSBarry Smith   PetscFunctionBegin;
1348251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
1349251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
1350251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
13510f5bd95cSBarry Smith 
1352c45a1595SBarry Smith   if (iascii) {
1353c45a1595SBarry Smith     ierr = MatView_SeqDense_ASCII(A,viewer);CHKERRQ(ierr);
13540f5bd95cSBarry Smith   } else if (isbinary) {
13553a40ed3dSBarry Smith     ierr = MatView_SeqDense_Binary(A,viewer);CHKERRQ(ierr);
1356f1af5d2fSBarry Smith   } else if (isdraw) {
1357f1af5d2fSBarry Smith     ierr = MatView_SeqDense_Draw(A,viewer);CHKERRQ(ierr);
1358932b0c3eSLois Curfman McInnes   }
13593a40ed3dSBarry Smith   PetscFunctionReturn(0);
1360932b0c3eSLois Curfman McInnes }
1361289bc588SBarry Smith 
1362d3042a70SBarry Smith static PetscErrorCode MatDensePlaceArray_SeqDense(Mat A,const PetscScalar array[])
1363d3042a70SBarry Smith {
1364d3042a70SBarry Smith   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
1365d3042a70SBarry Smith 
1366d3042a70SBarry Smith   PetscFunctionBegin;
1367d3042a70SBarry Smith   a->unplacedarray       = a->v;
1368d3042a70SBarry Smith   a->unplaced_user_alloc = a->user_alloc;
1369d3042a70SBarry Smith   a->v                   = (PetscScalar*) array;
1370d3042a70SBarry Smith   PetscFunctionReturn(0);
1371d3042a70SBarry Smith }
1372d3042a70SBarry Smith 
1373d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_SeqDense(Mat A)
1374d3042a70SBarry Smith {
1375d3042a70SBarry Smith   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
1376d3042a70SBarry Smith 
1377d3042a70SBarry Smith   PetscFunctionBegin;
1378d3042a70SBarry Smith   a->v             = a->unplacedarray;
1379d3042a70SBarry Smith   a->user_alloc    = a->unplaced_user_alloc;
1380d3042a70SBarry Smith   a->unplacedarray = NULL;
1381d3042a70SBarry Smith   PetscFunctionReturn(0);
1382d3042a70SBarry Smith }
1383d3042a70SBarry Smith 
1384e0877f53SBarry Smith static PetscErrorCode MatDestroy_SeqDense(Mat mat)
1385289bc588SBarry Smith {
1386ec8511deSBarry Smith   Mat_SeqDense   *l = (Mat_SeqDense*)mat->data;
1387dfbe8321SBarry Smith   PetscErrorCode ierr;
138890f02eecSBarry Smith 
13893a40ed3dSBarry Smith   PetscFunctionBegin;
1390aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1391d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows %D Cols %D",mat->rmap->n,mat->cmap->n);
1392a5a9c739SBarry Smith #endif
139305b42c5fSBarry Smith   ierr = PetscFree(l->pivots);CHKERRQ(ierr);
1394a49dc2a2SStefano Zampini   ierr = PetscFree(l->fwork);CHKERRQ(ierr);
1395abc3b08eSStefano Zampini   ierr = MatDestroy(&l->ptapwork);CHKERRQ(ierr);
13966857c123SSatish Balay   if (!l->user_alloc) {ierr = PetscFree(l->v);CHKERRQ(ierr);}
1397bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
1398dbd8c25aSHong Zhang 
1399dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
1400bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr);
1401d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL);CHKERRQ(ierr);
1402d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL);CHKERRQ(ierr);
1403bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr);
14048baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_seqdense_seqaij_C",NULL);CHKERRQ(ierr);
14058baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
14068baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_seqdense_elemental_C",NULL);CHKERRQ(ierr);
14078baccfbdSHong Zhang #endif
1408bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSeqDenseSetPreallocation_C",NULL);CHKERRQ(ierr);
1409bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_seqaij_seqdense_C",NULL);CHKERRQ(ierr);
1410bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_seqaij_seqdense_C",NULL);CHKERRQ(ierr);
1411bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_seqaij_seqdense_C",NULL);CHKERRQ(ierr);
1412abc3b08eSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatPtAP_seqaij_seqdense_C",NULL);CHKERRQ(ierr);
14133bf78175SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMult_seqaij_seqdense_C",NULL);CHKERRQ(ierr);
14143bf78175SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_seqaij_seqdense_C",NULL);CHKERRQ(ierr);
14153bf78175SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_seqaij_seqdense_C",NULL);CHKERRQ(ierr);
14163a40ed3dSBarry Smith   PetscFunctionReturn(0);
1417289bc588SBarry Smith }
1418289bc588SBarry Smith 
1419e0877f53SBarry Smith static PetscErrorCode MatTranspose_SeqDense(Mat A,MatReuse reuse,Mat *matout)
1420289bc588SBarry Smith {
1421c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
14226849ba73SBarry Smith   PetscErrorCode ierr;
142313f74950SBarry Smith   PetscInt       k,j,m,n,M;
142487828ca2SBarry Smith   PetscScalar    *v,tmp;
142548b35521SBarry Smith 
14263a40ed3dSBarry Smith   PetscFunctionBegin;
1427d0f46423SBarry Smith   v = mat->v; m = A->rmap->n; M = mat->lda; n = A->cmap->n;
1428cf37664fSBarry Smith   if (reuse == MAT_INPLACE_MATRIX) { /* in place transpose */
1429e7e72b3dSBarry Smith     if (m != n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can not transpose non-square matrix in place");
1430e7e72b3dSBarry Smith     else {
1431d3e5ee88SLois Curfman McInnes       for (j=0; j<m; j++) {
1432289bc588SBarry Smith         for (k=0; k<j; k++) {
14331b807ce4Svictorle           tmp        = v[j + k*M];
14341b807ce4Svictorle           v[j + k*M] = v[k + j*M];
14351b807ce4Svictorle           v[k + j*M] = tmp;
1436289bc588SBarry Smith         }
1437289bc588SBarry Smith       }
1438d64ed03dSBarry Smith     }
14393a40ed3dSBarry Smith   } else { /* out-of-place transpose */
1440d3e5ee88SLois Curfman McInnes     Mat          tmat;
1441ec8511deSBarry Smith     Mat_SeqDense *tmatd;
144287828ca2SBarry Smith     PetscScalar  *v2;
1443af36a384SStefano Zampini     PetscInt     M2;
1444ea709b57SSatish Balay 
1445fc4dec0aSBarry Smith     if (reuse == MAT_INITIAL_MATRIX) {
1446ce94432eSBarry Smith       ierr = MatCreate(PetscObjectComm((PetscObject)A),&tmat);CHKERRQ(ierr);
1447d0f46423SBarry Smith       ierr = MatSetSizes(tmat,A->cmap->n,A->rmap->n,A->cmap->n,A->rmap->n);CHKERRQ(ierr);
14487adad957SLisandro Dalcin       ierr = MatSetType(tmat,((PetscObject)A)->type_name);CHKERRQ(ierr);
14490298fd71SBarry Smith       ierr = MatSeqDenseSetPreallocation(tmat,NULL);CHKERRQ(ierr);
1450fc4dec0aSBarry Smith     } else {
1451fc4dec0aSBarry Smith       tmat = *matout;
1452fc4dec0aSBarry Smith     }
1453ec8511deSBarry Smith     tmatd = (Mat_SeqDense*)tmat->data;
1454af36a384SStefano Zampini     v = mat->v; v2 = tmatd->v; M2 = tmatd->lda;
1455d3e5ee88SLois Curfman McInnes     for (j=0; j<n; j++) {
1456af36a384SStefano Zampini       for (k=0; k<m; k++) v2[j + k*M2] = v[k + j*M];
1457d3e5ee88SLois Curfman McInnes     }
14586d4a8577SBarry Smith     ierr = MatAssemblyBegin(tmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
14596d4a8577SBarry Smith     ierr = MatAssemblyEnd(tmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1460d3e5ee88SLois Curfman McInnes     *matout = tmat;
146148b35521SBarry Smith   }
14623a40ed3dSBarry Smith   PetscFunctionReturn(0);
1463289bc588SBarry Smith }
1464289bc588SBarry Smith 
1465e0877f53SBarry Smith static PetscErrorCode MatEqual_SeqDense(Mat A1,Mat A2,PetscBool  *flg)
1466289bc588SBarry Smith {
1467c0bbcb79SLois Curfman McInnes   Mat_SeqDense *mat1 = (Mat_SeqDense*)A1->data;
1468c0bbcb79SLois Curfman McInnes   Mat_SeqDense *mat2 = (Mat_SeqDense*)A2->data;
146913f74950SBarry Smith   PetscInt     i,j;
1470a2ea699eSBarry Smith   PetscScalar  *v1,*v2;
14719ea5d5aeSSatish Balay 
14723a40ed3dSBarry Smith   PetscFunctionBegin;
1473d0f46423SBarry Smith   if (A1->rmap->n != A2->rmap->n) {*flg = PETSC_FALSE; PetscFunctionReturn(0);}
1474d0f46423SBarry Smith   if (A1->cmap->n != A2->cmap->n) {*flg = PETSC_FALSE; PetscFunctionReturn(0);}
1475d0f46423SBarry Smith   for (i=0; i<A1->rmap->n; i++) {
14761b807ce4Svictorle     v1 = mat1->v+i; v2 = mat2->v+i;
1477d0f46423SBarry Smith     for (j=0; j<A1->cmap->n; j++) {
14783a40ed3dSBarry Smith       if (*v1 != *v2) {*flg = PETSC_FALSE; PetscFunctionReturn(0);}
14791b807ce4Svictorle       v1 += mat1->lda; v2 += mat2->lda;
14801b807ce4Svictorle     }
1481289bc588SBarry Smith   }
148277c4ece6SBarry Smith   *flg = PETSC_TRUE;
14833a40ed3dSBarry Smith   PetscFunctionReturn(0);
1484289bc588SBarry Smith }
1485289bc588SBarry Smith 
1486e0877f53SBarry Smith static PetscErrorCode MatGetDiagonal_SeqDense(Mat A,Vec v)
1487289bc588SBarry Smith {
1488c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
1489dfbe8321SBarry Smith   PetscErrorCode ierr;
149013f74950SBarry Smith   PetscInt       i,n,len;
149187828ca2SBarry Smith   PetscScalar    *x,zero = 0.0;
149244cd7ae7SLois Curfman McInnes 
14933a40ed3dSBarry Smith   PetscFunctionBegin;
14942dcb1b2aSMatthew Knepley   ierr = VecSet(v,zero);CHKERRQ(ierr);
14957a97a34bSBarry Smith   ierr = VecGetSize(v,&n);CHKERRQ(ierr);
14961ebc52fbSHong Zhang   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
1497d0f46423SBarry Smith   len  = PetscMin(A->rmap->n,A->cmap->n);
1498e32f2f54SBarry Smith   if (n != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec");
149944cd7ae7SLois Curfman McInnes   for (i=0; i<len; i++) {
15001b807ce4Svictorle     x[i] = mat->v[i*mat->lda + i];
1501289bc588SBarry Smith   }
15021ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
15033a40ed3dSBarry Smith   PetscFunctionReturn(0);
1504289bc588SBarry Smith }
1505289bc588SBarry Smith 
1506e0877f53SBarry Smith static PetscErrorCode MatDiagonalScale_SeqDense(Mat A,Vec ll,Vec rr)
1507289bc588SBarry Smith {
1508c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
1509f1ceaac6SMatthew G. Knepley   const PetscScalar *l,*r;
1510f1ceaac6SMatthew G. Knepley   PetscScalar       x,*v;
1511dfbe8321SBarry Smith   PetscErrorCode    ierr;
1512d0f46423SBarry Smith   PetscInt          i,j,m = A->rmap->n,n = A->cmap->n;
151355659b69SBarry Smith 
15143a40ed3dSBarry Smith   PetscFunctionBegin;
151528988994SBarry Smith   if (ll) {
15167a97a34bSBarry Smith     ierr = VecGetSize(ll,&m);CHKERRQ(ierr);
1517f1ceaac6SMatthew G. Knepley     ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr);
1518e32f2f54SBarry Smith     if (m != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vec wrong size");
1519da3a660dSBarry Smith     for (i=0; i<m; i++) {
1520da3a660dSBarry Smith       x = l[i];
1521da3a660dSBarry Smith       v = mat->v + i;
1522b43bac26SStefano Zampini       for (j=0; j<n; j++) { (*v) *= x; v+= mat->lda;}
1523da3a660dSBarry Smith     }
1524f1ceaac6SMatthew G. Knepley     ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr);
1525eb3f19e4SBarry Smith     ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr);
1526da3a660dSBarry Smith   }
152728988994SBarry Smith   if (rr) {
15287a97a34bSBarry Smith     ierr = VecGetSize(rr,&n);CHKERRQ(ierr);
1529f1ceaac6SMatthew G. Knepley     ierr = VecGetArrayRead(rr,&r);CHKERRQ(ierr);
1530e32f2f54SBarry Smith     if (n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec wrong size");
1531da3a660dSBarry Smith     for (i=0; i<n; i++) {
1532da3a660dSBarry Smith       x = r[i];
1533b43bac26SStefano Zampini       v = mat->v + i*mat->lda;
15342205254eSKarl Rupp       for (j=0; j<m; j++) (*v++) *= x;
1535da3a660dSBarry Smith     }
1536f1ceaac6SMatthew G. Knepley     ierr = VecRestoreArrayRead(rr,&r);CHKERRQ(ierr);
1537eb3f19e4SBarry Smith     ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr);
1538da3a660dSBarry Smith   }
15393a40ed3dSBarry Smith   PetscFunctionReturn(0);
1540289bc588SBarry Smith }
1541289bc588SBarry Smith 
1542e0877f53SBarry Smith static PetscErrorCode MatNorm_SeqDense(Mat A,NormType type,PetscReal *nrm)
1543289bc588SBarry Smith {
1544c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
154587828ca2SBarry Smith   PetscScalar    *v   = mat->v;
1546329f5518SBarry Smith   PetscReal      sum  = 0.0;
1547d0f46423SBarry Smith   PetscInt       lda  =mat->lda,m=A->rmap->n,i,j;
1548efee365bSSatish Balay   PetscErrorCode ierr;
154955659b69SBarry Smith 
15503a40ed3dSBarry Smith   PetscFunctionBegin;
1551289bc588SBarry Smith   if (type == NORM_FROBENIUS) {
1552a5ce6ee0Svictorle     if (lda>m) {
1553d0f46423SBarry Smith       for (j=0; j<A->cmap->n; j++) {
1554a5ce6ee0Svictorle         v = mat->v+j*lda;
1555a5ce6ee0Svictorle         for (i=0; i<m; i++) {
1556a5ce6ee0Svictorle           sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
1557a5ce6ee0Svictorle         }
1558a5ce6ee0Svictorle       }
1559a5ce6ee0Svictorle     } else {
1560570b7f6dSBarry Smith #if defined(PETSC_USE_REAL___FP16)
1561570b7f6dSBarry Smith       PetscBLASInt one = 1,cnt = A->cmap->n*A->rmap->n;
1562570b7f6dSBarry Smith       *nrm = BLASnrm2_(&cnt,v,&one);
1563570b7f6dSBarry Smith     }
1564570b7f6dSBarry Smith #else
1565d0f46423SBarry Smith       for (i=0; i<A->cmap->n*A->rmap->n; i++) {
1566329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
1567289bc588SBarry Smith       }
1568a5ce6ee0Svictorle     }
15698f1a2a5eSBarry Smith     *nrm = PetscSqrtReal(sum);
1570570b7f6dSBarry Smith #endif
1571dc0b31edSSatish Balay     ierr = PetscLogFlops(2.0*A->cmap->n*A->rmap->n);CHKERRQ(ierr);
15723a40ed3dSBarry Smith   } else if (type == NORM_1) {
1573064f8208SBarry Smith     *nrm = 0.0;
1574d0f46423SBarry Smith     for (j=0; j<A->cmap->n; j++) {
15751b807ce4Svictorle       v   = mat->v + j*mat->lda;
1576289bc588SBarry Smith       sum = 0.0;
1577d0f46423SBarry Smith       for (i=0; i<A->rmap->n; i++) {
157833a8263dSBarry Smith         sum += PetscAbsScalar(*v);  v++;
1579289bc588SBarry Smith       }
1580064f8208SBarry Smith       if (sum > *nrm) *nrm = sum;
1581289bc588SBarry Smith     }
1582eb3f19e4SBarry Smith     ierr = PetscLogFlops(1.0*A->cmap->n*A->rmap->n);CHKERRQ(ierr);
15833a40ed3dSBarry Smith   } else if (type == NORM_INFINITY) {
1584064f8208SBarry Smith     *nrm = 0.0;
1585d0f46423SBarry Smith     for (j=0; j<A->rmap->n; j++) {
1586289bc588SBarry Smith       v   = mat->v + j;
1587289bc588SBarry Smith       sum = 0.0;
1588d0f46423SBarry Smith       for (i=0; i<A->cmap->n; i++) {
15891b807ce4Svictorle         sum += PetscAbsScalar(*v); v += mat->lda;
1590289bc588SBarry Smith       }
1591064f8208SBarry Smith       if (sum > *nrm) *nrm = sum;
1592289bc588SBarry Smith     }
1593eb3f19e4SBarry Smith     ierr = PetscLogFlops(1.0*A->cmap->n*A->rmap->n);CHKERRQ(ierr);
1594e7e72b3dSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No two norm");
15953a40ed3dSBarry Smith   PetscFunctionReturn(0);
1596289bc588SBarry Smith }
1597289bc588SBarry Smith 
1598e0877f53SBarry Smith static PetscErrorCode MatSetOption_SeqDense(Mat A,MatOption op,PetscBool flg)
1599289bc588SBarry Smith {
1600c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *aij = (Mat_SeqDense*)A->data;
160163ba0a88SBarry Smith   PetscErrorCode ierr;
160267e560aaSBarry Smith 
16033a40ed3dSBarry Smith   PetscFunctionBegin;
1604b5a2b587SKris Buschelman   switch (op) {
1605b5a2b587SKris Buschelman   case MAT_ROW_ORIENTED:
16064e0d8c25SBarry Smith     aij->roworiented = flg;
1607b5a2b587SKris Buschelman     break;
1608512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1609b5a2b587SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
16103971808eSMatthew Knepley   case MAT_NEW_NONZERO_ALLOCATION_ERR:
16114e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
161213fa8e87SLisandro Dalcin   case MAT_KEEP_NONZERO_PATTERN:
1613b5a2b587SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1614b5a2b587SKris Buschelman   case MAT_USE_HASH_TABLE:
16150f8fb01aSBarry Smith   case MAT_IGNORE_ZERO_ENTRIES:
16165021d80fSJed Brown   case MAT_IGNORE_LOWER_TRIANGULAR:
16175021d80fSJed Brown     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
16185021d80fSJed Brown     break;
16195021d80fSJed Brown   case MAT_SPD:
162077e54ba9SKris Buschelman   case MAT_SYMMETRIC:
162177e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
16229a4540c5SBarry Smith   case MAT_HERMITIAN:
16239a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
16245021d80fSJed Brown     /* These options are handled directly by MatSetOption() */
162577e54ba9SKris Buschelman     break;
1626b5a2b587SKris Buschelman   default:
1627e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]);
16283a40ed3dSBarry Smith   }
16293a40ed3dSBarry Smith   PetscFunctionReturn(0);
1630289bc588SBarry Smith }
1631289bc588SBarry Smith 
1632e0877f53SBarry Smith static PetscErrorCode MatZeroEntries_SeqDense(Mat A)
16336f0a148fSBarry Smith {
1634ec8511deSBarry Smith   Mat_SeqDense   *l = (Mat_SeqDense*)A->data;
16356849ba73SBarry Smith   PetscErrorCode ierr;
1636d0f46423SBarry Smith   PetscInt       lda=l->lda,m=A->rmap->n,j;
16373a40ed3dSBarry Smith 
16383a40ed3dSBarry Smith   PetscFunctionBegin;
1639a5ce6ee0Svictorle   if (lda>m) {
1640d0f46423SBarry Smith     for (j=0; j<A->cmap->n; j++) {
1641a5ce6ee0Svictorle       ierr = PetscMemzero(l->v+j*lda,m*sizeof(PetscScalar));CHKERRQ(ierr);
1642a5ce6ee0Svictorle     }
1643a5ce6ee0Svictorle   } else {
1644d0f46423SBarry Smith     ierr = PetscMemzero(l->v,A->rmap->n*A->cmap->n*sizeof(PetscScalar));CHKERRQ(ierr);
1645a5ce6ee0Svictorle   }
16463a40ed3dSBarry Smith   PetscFunctionReturn(0);
16476f0a148fSBarry Smith }
16486f0a148fSBarry Smith 
1649e0877f53SBarry Smith static PetscErrorCode MatZeroRows_SeqDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
16506f0a148fSBarry Smith {
165197b48c8fSBarry Smith   PetscErrorCode    ierr;
1652ec8511deSBarry Smith   Mat_SeqDense      *l = (Mat_SeqDense*)A->data;
1653b9679d65SBarry Smith   PetscInt          m  = l->lda, n = A->cmap->n, i,j;
165497b48c8fSBarry Smith   PetscScalar       *slot,*bb;
165597b48c8fSBarry Smith   const PetscScalar *xx;
165655659b69SBarry Smith 
16573a40ed3dSBarry Smith   PetscFunctionBegin;
1658b9679d65SBarry Smith #if defined(PETSC_USE_DEBUG)
1659b9679d65SBarry Smith   for (i=0; i<N; i++) {
1660b9679d65SBarry Smith     if (rows[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row requested to be zeroed");
1661b9679d65SBarry Smith     if (rows[i] >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D requested to be zeroed greater than or equal number of rows %D",rows[i],A->rmap->n);
1662b9679d65SBarry Smith   }
1663b9679d65SBarry Smith #endif
1664b9679d65SBarry Smith 
166597b48c8fSBarry Smith   /* fix right hand side if needed */
166697b48c8fSBarry Smith   if (x && b) {
166797b48c8fSBarry Smith     ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr);
166897b48c8fSBarry Smith     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
16692205254eSKarl Rupp     for (i=0; i<N; i++) bb[rows[i]] = diag*xx[rows[i]];
167097b48c8fSBarry Smith     ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr);
167197b48c8fSBarry Smith     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
167297b48c8fSBarry Smith   }
167397b48c8fSBarry Smith 
16746f0a148fSBarry Smith   for (i=0; i<N; i++) {
16756f0a148fSBarry Smith     slot = l->v + rows[i];
1676b9679d65SBarry Smith     for (j=0; j<n; j++) { *slot = 0.0; slot += m;}
16776f0a148fSBarry Smith   }
1678f4df32b1SMatthew Knepley   if (diag != 0.0) {
1679b9679d65SBarry Smith     if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only coded for square matrices");
16806f0a148fSBarry Smith     for (i=0; i<N; i++) {
1681b9679d65SBarry Smith       slot  = l->v + (m+1)*rows[i];
1682f4df32b1SMatthew Knepley       *slot = diag;
16836f0a148fSBarry Smith     }
16846f0a148fSBarry Smith   }
16853a40ed3dSBarry Smith   PetscFunctionReturn(0);
16866f0a148fSBarry Smith }
1687557bce09SLois Curfman McInnes 
1688e0877f53SBarry Smith static PetscErrorCode MatDenseGetArray_SeqDense(Mat A,PetscScalar *array[])
168964e87e97SBarry Smith {
1690c0bbcb79SLois Curfman McInnes   Mat_SeqDense *mat = (Mat_SeqDense*)A->data;
16913a40ed3dSBarry Smith 
16923a40ed3dSBarry Smith   PetscFunctionBegin;
1693e32f2f54SBarry Smith   if (mat->lda != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Cannot get array for Dense matrices with LDA different from number of rows");
169464e87e97SBarry Smith   *array = mat->v;
16953a40ed3dSBarry Smith   PetscFunctionReturn(0);
169664e87e97SBarry Smith }
16970754003eSLois Curfman McInnes 
1698e0877f53SBarry Smith static PetscErrorCode MatDenseRestoreArray_SeqDense(Mat A,PetscScalar *array[])
1699ff14e315SSatish Balay {
17003a40ed3dSBarry Smith   PetscFunctionBegin;
170109b544d4SBarry Smith   *array = 0; /* user cannot accidently use the array later */
17023a40ed3dSBarry Smith   PetscFunctionReturn(0);
1703ff14e315SSatish Balay }
17040754003eSLois Curfman McInnes 
1705dec5eb66SMatthew G Knepley /*@C
17068c778c55SBarry Smith    MatDenseGetArray - gives access to the array where the data for a SeqDense matrix is stored
170773a71a0fSBarry Smith 
170873a71a0fSBarry Smith    Not Collective
170973a71a0fSBarry Smith 
171073a71a0fSBarry Smith    Input Parameter:
1711579dbff0SBarry Smith .  mat - a MATSEQDENSE or MATMPIDENSE matrix
171273a71a0fSBarry Smith 
171373a71a0fSBarry Smith    Output Parameter:
171473a71a0fSBarry Smith .   array - pointer to the data
171573a71a0fSBarry Smith 
171673a71a0fSBarry Smith    Level: intermediate
171773a71a0fSBarry Smith 
17188c778c55SBarry Smith .seealso: MatDenseRestoreArray()
171973a71a0fSBarry Smith @*/
17208c778c55SBarry Smith PetscErrorCode  MatDenseGetArray(Mat A,PetscScalar **array)
172173a71a0fSBarry Smith {
172273a71a0fSBarry Smith   PetscErrorCode ierr;
172373a71a0fSBarry Smith 
172473a71a0fSBarry Smith   PetscFunctionBegin;
17258c778c55SBarry Smith   ierr = PetscUseMethod(A,"MatDenseGetArray_C",(Mat,PetscScalar**),(A,array));CHKERRQ(ierr);
172673a71a0fSBarry Smith   PetscFunctionReturn(0);
172773a71a0fSBarry Smith }
172873a71a0fSBarry Smith 
1729dec5eb66SMatthew G Knepley /*@C
1730579dbff0SBarry Smith    MatDenseRestoreArray - returns access to the array where the data for a dense matrix is stored obtained by MatDenseGetArray()
173173a71a0fSBarry Smith 
173273a71a0fSBarry Smith    Not Collective
173373a71a0fSBarry Smith 
173473a71a0fSBarry Smith    Input Parameters:
1735579dbff0SBarry Smith .  mat - a MATSEQDENSE or MATMPIDENSE matrix
173673a71a0fSBarry Smith .  array - pointer to the data
173773a71a0fSBarry Smith 
173873a71a0fSBarry Smith    Level: intermediate
173973a71a0fSBarry Smith 
17408c778c55SBarry Smith .seealso: MatDenseGetArray()
174173a71a0fSBarry Smith @*/
17428c778c55SBarry Smith PetscErrorCode  MatDenseRestoreArray(Mat A,PetscScalar **array)
174373a71a0fSBarry Smith {
174473a71a0fSBarry Smith   PetscErrorCode ierr;
174573a71a0fSBarry Smith 
174673a71a0fSBarry Smith   PetscFunctionBegin;
17478c778c55SBarry Smith   ierr = PetscUseMethod(A,"MatDenseRestoreArray_C",(Mat,PetscScalar**),(A,array));CHKERRQ(ierr);
174873a71a0fSBarry Smith   PetscFunctionReturn(0);
174973a71a0fSBarry Smith }
175073a71a0fSBarry Smith 
17517dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_SeqDense(Mat A,IS isrow,IS iscol,PetscInt cs,MatReuse scall,Mat *B)
17520754003eSLois Curfman McInnes {
1753c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
17546849ba73SBarry Smith   PetscErrorCode ierr;
17555d0c19d7SBarry Smith   PetscInt       i,j,nrows,ncols;
17565d0c19d7SBarry Smith   const PetscInt *irow,*icol;
175787828ca2SBarry Smith   PetscScalar    *av,*bv,*v = mat->v;
17580754003eSLois Curfman McInnes   Mat            newmat;
17590754003eSLois Curfman McInnes 
17603a40ed3dSBarry Smith   PetscFunctionBegin;
176178b31e54SBarry Smith   ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr);
176278b31e54SBarry Smith   ierr = ISGetIndices(iscol,&icol);CHKERRQ(ierr);
1763e03a110bSBarry Smith   ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr);
1764e03a110bSBarry Smith   ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr);
17650754003eSLois Curfman McInnes 
1766182d2002SSatish Balay   /* Check submatrixcall */
1767182d2002SSatish Balay   if (scall == MAT_REUSE_MATRIX) {
176813f74950SBarry Smith     PetscInt n_cols,n_rows;
1769182d2002SSatish Balay     ierr = MatGetSize(*B,&n_rows,&n_cols);CHKERRQ(ierr);
177021a2c019SBarry Smith     if (n_rows != nrows || n_cols != ncols) {
1771f746d493SDmitry Karpeev       /* resize the result matrix to match number of requested rows/columns */
1772c61587bbSBarry Smith       ierr = MatSetSizes(*B,nrows,ncols,nrows,ncols);CHKERRQ(ierr);
177321a2c019SBarry Smith     }
1774182d2002SSatish Balay     newmat = *B;
1775182d2002SSatish Balay   } else {
17760754003eSLois Curfman McInnes     /* Create and fill new matrix */
1777ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr);
1778f69a0ea3SMatthew Knepley     ierr = MatSetSizes(newmat,nrows,ncols,nrows,ncols);CHKERRQ(ierr);
17797adad957SLisandro Dalcin     ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr);
17800298fd71SBarry Smith     ierr = MatSeqDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr);
1781182d2002SSatish Balay   }
1782182d2002SSatish Balay 
1783182d2002SSatish Balay   /* Now extract the data pointers and do the copy,column at a time */
1784182d2002SSatish Balay   bv = ((Mat_SeqDense*)newmat->data)->v;
1785182d2002SSatish Balay 
1786182d2002SSatish Balay   for (i=0; i<ncols; i++) {
17876de62eeeSBarry Smith     av = v + mat->lda*icol[i];
17882205254eSKarl Rupp     for (j=0; j<nrows; j++) *bv++ = av[irow[j]];
17890754003eSLois Curfman McInnes   }
1790182d2002SSatish Balay 
1791182d2002SSatish Balay   /* Assemble the matrices so that the correct flags are set */
17926d4a8577SBarry Smith   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
17936d4a8577SBarry Smith   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
17940754003eSLois Curfman McInnes 
17950754003eSLois Curfman McInnes   /* Free work space */
179678b31e54SBarry Smith   ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr);
179778b31e54SBarry Smith   ierr = ISRestoreIndices(iscol,&icol);CHKERRQ(ierr);
1798182d2002SSatish Balay   *B   = newmat;
17993a40ed3dSBarry Smith   PetscFunctionReturn(0);
18000754003eSLois Curfman McInnes }
18010754003eSLois Curfman McInnes 
18027dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrices_SeqDense(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1803905e6a2fSBarry Smith {
18046849ba73SBarry Smith   PetscErrorCode ierr;
180513f74950SBarry Smith   PetscInt       i;
1806905e6a2fSBarry Smith 
18073a40ed3dSBarry Smith   PetscFunctionBegin;
1808905e6a2fSBarry Smith   if (scall == MAT_INITIAL_MATRIX) {
1809df750dc8SHong Zhang     ierr = PetscCalloc1(n+1,B);CHKERRQ(ierr);
1810905e6a2fSBarry Smith   }
1811905e6a2fSBarry Smith 
1812905e6a2fSBarry Smith   for (i=0; i<n; i++) {
18137dae84e0SHong Zhang     ierr = MatCreateSubMatrix_SeqDense(A,irow[i],icol[i],PETSC_DECIDE,scall,&(*B)[i]);CHKERRQ(ierr);
1814905e6a2fSBarry Smith   }
18153a40ed3dSBarry Smith   PetscFunctionReturn(0);
1816905e6a2fSBarry Smith }
1817905e6a2fSBarry Smith 
1818e0877f53SBarry Smith static PetscErrorCode MatAssemblyBegin_SeqDense(Mat mat,MatAssemblyType mode)
1819c0aa2d19SHong Zhang {
1820c0aa2d19SHong Zhang   PetscFunctionBegin;
1821c0aa2d19SHong Zhang   PetscFunctionReturn(0);
1822c0aa2d19SHong Zhang }
1823c0aa2d19SHong Zhang 
1824e0877f53SBarry Smith static PetscErrorCode MatAssemblyEnd_SeqDense(Mat mat,MatAssemblyType mode)
1825c0aa2d19SHong Zhang {
1826c0aa2d19SHong Zhang   PetscFunctionBegin;
1827c0aa2d19SHong Zhang   PetscFunctionReturn(0);
1828c0aa2d19SHong Zhang }
1829c0aa2d19SHong Zhang 
1830e0877f53SBarry Smith static PetscErrorCode MatCopy_SeqDense(Mat A,Mat B,MatStructure str)
18314b0e389bSBarry Smith {
18324b0e389bSBarry Smith   Mat_SeqDense   *a = (Mat_SeqDense*)A->data,*b = (Mat_SeqDense*)B->data;
18336849ba73SBarry Smith   PetscErrorCode ierr;
1834d0f46423SBarry Smith   PetscInt       lda1=a->lda,lda2=b->lda, m=A->rmap->n,n=A->cmap->n, j;
18353a40ed3dSBarry Smith 
18363a40ed3dSBarry Smith   PetscFunctionBegin;
183733f4a19fSKris Buschelman   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
183833f4a19fSKris Buschelman   if (A->ops->copy != B->ops->copy) {
1839cb5b572fSBarry Smith     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
18403a40ed3dSBarry Smith     PetscFunctionReturn(0);
18413a40ed3dSBarry Smith   }
1842e32f2f54SBarry Smith   if (m != B->rmap->n || n != B->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"size(B) != size(A)");
1843a5ce6ee0Svictorle   if (lda1>m || lda2>m) {
18440dbb7854Svictorle     for (j=0; j<n; j++) {
1845a5ce6ee0Svictorle       ierr = PetscMemcpy(b->v+j*lda2,a->v+j*lda1,m*sizeof(PetscScalar));CHKERRQ(ierr);
1846a5ce6ee0Svictorle     }
1847a5ce6ee0Svictorle   } else {
1848d0f46423SBarry Smith     ierr = PetscMemcpy(b->v,a->v,A->rmap->n*A->cmap->n*sizeof(PetscScalar));CHKERRQ(ierr);
1849a5ce6ee0Svictorle   }
1850cdc753b6SBarry Smith   ierr = PetscObjectStateIncrease((PetscObject)B);CHKERRQ(ierr);
1851273d9f13SBarry Smith   PetscFunctionReturn(0);
1852273d9f13SBarry Smith }
1853273d9f13SBarry Smith 
1854e0877f53SBarry Smith static PetscErrorCode MatSetUp_SeqDense(Mat A)
1855273d9f13SBarry Smith {
1856dfbe8321SBarry Smith   PetscErrorCode ierr;
1857273d9f13SBarry Smith 
1858273d9f13SBarry Smith   PetscFunctionBegin;
1859273d9f13SBarry Smith   ierr =  MatSeqDenseSetPreallocation(A,0);CHKERRQ(ierr);
18603a40ed3dSBarry Smith   PetscFunctionReturn(0);
18614b0e389bSBarry Smith }
18624b0e389bSBarry Smith 
1863ba337c44SJed Brown static PetscErrorCode MatConjugate_SeqDense(Mat A)
1864ba337c44SJed Brown {
1865ba337c44SJed Brown   Mat_SeqDense *a = (Mat_SeqDense*)A->data;
1866ba337c44SJed Brown   PetscInt     i,nz = A->rmap->n*A->cmap->n;
1867ba337c44SJed Brown   PetscScalar  *aa = a->v;
1868ba337c44SJed Brown 
1869ba337c44SJed Brown   PetscFunctionBegin;
1870ba337c44SJed Brown   for (i=0; i<nz; i++) aa[i] = PetscConj(aa[i]);
1871ba337c44SJed Brown   PetscFunctionReturn(0);
1872ba337c44SJed Brown }
1873ba337c44SJed Brown 
1874ba337c44SJed Brown static PetscErrorCode MatRealPart_SeqDense(Mat A)
1875ba337c44SJed Brown {
1876ba337c44SJed Brown   Mat_SeqDense *a = (Mat_SeqDense*)A->data;
1877ba337c44SJed Brown   PetscInt     i,nz = A->rmap->n*A->cmap->n;
1878ba337c44SJed Brown   PetscScalar  *aa = a->v;
1879ba337c44SJed Brown 
1880ba337c44SJed Brown   PetscFunctionBegin;
1881ba337c44SJed Brown   for (i=0; i<nz; i++) aa[i] = PetscRealPart(aa[i]);
1882ba337c44SJed Brown   PetscFunctionReturn(0);
1883ba337c44SJed Brown }
1884ba337c44SJed Brown 
1885ba337c44SJed Brown static PetscErrorCode MatImaginaryPart_SeqDense(Mat A)
1886ba337c44SJed Brown {
1887ba337c44SJed Brown   Mat_SeqDense *a = (Mat_SeqDense*)A->data;
1888ba337c44SJed Brown   PetscInt     i,nz = A->rmap->n*A->cmap->n;
1889ba337c44SJed Brown   PetscScalar  *aa = a->v;
1890ba337c44SJed Brown 
1891ba337c44SJed Brown   PetscFunctionBegin;
1892ba337c44SJed Brown   for (i=0; i<nz; i++) aa[i] = PetscImaginaryPart(aa[i]);
1893ba337c44SJed Brown   PetscFunctionReturn(0);
1894ba337c44SJed Brown }
1895284134d9SBarry Smith 
1896a9fe9ddaSSatish Balay /* ----------------------------------------------------------------*/
1897150d2497SBarry Smith PETSC_INTERN PetscErrorCode MatMatMult_SeqDense_SeqDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C)
1898a9fe9ddaSSatish Balay {
1899a9fe9ddaSSatish Balay   PetscErrorCode ierr;
1900a9fe9ddaSSatish Balay 
1901a9fe9ddaSSatish Balay   PetscFunctionBegin;
1902a9fe9ddaSSatish Balay   if (scall == MAT_INITIAL_MATRIX) {
19033ff4c91cSHong Zhang     ierr = PetscLogEventBegin(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr);
1904a9fe9ddaSSatish Balay     ierr = MatMatMultSymbolic_SeqDense_SeqDense(A,B,fill,C);CHKERRQ(ierr);
19053ff4c91cSHong Zhang     ierr = PetscLogEventEnd(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr);
1906a9fe9ddaSSatish Balay   }
19073ff4c91cSHong Zhang   ierr = PetscLogEventBegin(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr);
1908a9fe9ddaSSatish Balay   ierr = MatMatMultNumeric_SeqDense_SeqDense(A,B,*C);CHKERRQ(ierr);
19093ff4c91cSHong Zhang   ierr = PetscLogEventEnd(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr);
1910a9fe9ddaSSatish Balay   PetscFunctionReturn(0);
1911a9fe9ddaSSatish Balay }
1912a9fe9ddaSSatish Balay 
1913a9fe9ddaSSatish Balay PetscErrorCode MatMatMultSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat *C)
1914a9fe9ddaSSatish Balay {
1915ee16a9a1SHong Zhang   PetscErrorCode ierr;
1916d0f46423SBarry Smith   PetscInt       m=A->rmap->n,n=B->cmap->n;
1917ee16a9a1SHong Zhang   Mat            Cmat;
1918a9fe9ddaSSatish Balay 
1919ee16a9a1SHong Zhang   PetscFunctionBegin;
1920e32f2f54SBarry Smith   if (A->cmap->n != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"A->cmap->n %d != B->rmap->n %d\n",A->cmap->n,B->rmap->n);
1921ee16a9a1SHong Zhang   ierr = MatCreate(PETSC_COMM_SELF,&Cmat);CHKERRQ(ierr);
1922ee16a9a1SHong Zhang   ierr = MatSetSizes(Cmat,m,n,m,n);CHKERRQ(ierr);
1923ee16a9a1SHong Zhang   ierr = MatSetType(Cmat,MATSEQDENSE);CHKERRQ(ierr);
19240298fd71SBarry Smith   ierr = MatSeqDenseSetPreallocation(Cmat,NULL);CHKERRQ(ierr);
1925d73949e8SHong Zhang 
1926ee16a9a1SHong Zhang   *C = Cmat;
1927ee16a9a1SHong Zhang   PetscFunctionReturn(0);
1928ee16a9a1SHong Zhang }
1929a9fe9ddaSSatish Balay 
1930a9fe9ddaSSatish Balay PetscErrorCode MatMatMultNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C)
1931a9fe9ddaSSatish Balay {
1932a9fe9ddaSSatish Balay   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
1933a9fe9ddaSSatish Balay   Mat_SeqDense   *b = (Mat_SeqDense*)B->data;
1934a9fe9ddaSSatish Balay   Mat_SeqDense   *c = (Mat_SeqDense*)C->data;
19350805154bSBarry Smith   PetscBLASInt   m,n,k;
1936a9fe9ddaSSatish Balay   PetscScalar    _DOne=1.0,_DZero=0.0;
1937c5df96a5SBarry Smith   PetscErrorCode ierr;
1938fd4e9aacSBarry Smith   PetscBool      flg;
1939a9fe9ddaSSatish Balay 
1940a9fe9ddaSSatish Balay   PetscFunctionBegin;
1941fd4e9aacSBarry Smith   ierr = PetscObjectTypeCompare((PetscObject)B,MATSEQDENSE,&flg);CHKERRQ(ierr);
1942fd4e9aacSBarry Smith   if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Second matrix must be dense");
1943fd4e9aacSBarry Smith 
1944fd4e9aacSBarry Smith   /* Handle case where where user provided the final C matrix rather than calling MatMatMult() with MAT_INITIAL_MATRIX*/
1945fd4e9aacSBarry Smith   ierr = PetscObjectTypeCompare((PetscObject)A,MATSEQAIJ,&flg);CHKERRQ(ierr);
1946fd4e9aacSBarry Smith   if (flg) {
1947fd4e9aacSBarry Smith     C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqDense;
1948fd4e9aacSBarry Smith     ierr = (*C->ops->matmultnumeric)(A,B,C);CHKERRQ(ierr);
1949fd4e9aacSBarry Smith     PetscFunctionReturn(0);
1950fd4e9aacSBarry Smith   }
1951fd4e9aacSBarry Smith 
1952fd4e9aacSBarry Smith   ierr = PetscObjectTypeCompare((PetscObject)A,MATSEQDENSE,&flg);CHKERRQ(ierr);
1953fd4e9aacSBarry Smith   if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"First matrix must be dense");
19548208b9aeSStefano Zampini   ierr = PetscBLASIntCast(C->rmap->n,&m);CHKERRQ(ierr);
19558208b9aeSStefano Zampini   ierr = PetscBLASIntCast(C->cmap->n,&n);CHKERRQ(ierr);
1956c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->cmap->n,&k);CHKERRQ(ierr);
19575ca1cc5dSStefano Zampini   PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&m,&n,&k,&_DOne,a->v,&a->lda,b->v,&b->lda,&_DZero,c->v,&c->lda));
1958a9fe9ddaSSatish Balay   PetscFunctionReturn(0);
1959a9fe9ddaSSatish Balay }
1960a9fe9ddaSSatish Balay 
196169f65d41SStefano Zampini PetscErrorCode MatMatTransposeMult_SeqDense_SeqDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C)
196269f65d41SStefano Zampini {
196369f65d41SStefano Zampini   PetscErrorCode ierr;
196469f65d41SStefano Zampini 
196569f65d41SStefano Zampini   PetscFunctionBegin;
196669f65d41SStefano Zampini   if (scall == MAT_INITIAL_MATRIX) {
196769f65d41SStefano Zampini     ierr = PetscLogEventBegin(MAT_MatTransposeMultSymbolic,A,B,0,0);CHKERRQ(ierr);
196869f65d41SStefano Zampini     ierr = MatMatTransposeMultSymbolic_SeqDense_SeqDense(A,B,fill,C);CHKERRQ(ierr);
196969f65d41SStefano Zampini     ierr = PetscLogEventEnd(MAT_MatTransposeMultSymbolic,A,B,0,0);CHKERRQ(ierr);
197069f65d41SStefano Zampini   }
197169f65d41SStefano Zampini   ierr = PetscLogEventBegin(MAT_MatTransposeMultNumeric,A,B,0,0);CHKERRQ(ierr);
197269f65d41SStefano Zampini   ierr = MatMatTransposeMultNumeric_SeqDense_SeqDense(A,B,*C);CHKERRQ(ierr);
197369f65d41SStefano Zampini   ierr = PetscLogEventEnd(MAT_MatTransposeMultNumeric,A,B,0,0);CHKERRQ(ierr);
197469f65d41SStefano Zampini   PetscFunctionReturn(0);
197569f65d41SStefano Zampini }
197669f65d41SStefano Zampini 
197769f65d41SStefano Zampini PetscErrorCode MatMatTransposeMultSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat *C)
197869f65d41SStefano Zampini {
197969f65d41SStefano Zampini   PetscErrorCode ierr;
198069f65d41SStefano Zampini   PetscInt       m=A->rmap->n,n=B->rmap->n;
198169f65d41SStefano Zampini   Mat            Cmat;
198269f65d41SStefano Zampini 
198369f65d41SStefano Zampini   PetscFunctionBegin;
198469f65d41SStefano Zampini   if (A->cmap->n != B->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"A->cmap->n %d != B->cmap->n %d\n",A->cmap->n,B->cmap->n);
198569f65d41SStefano Zampini   ierr = MatCreate(PETSC_COMM_SELF,&Cmat);CHKERRQ(ierr);
198669f65d41SStefano Zampini   ierr = MatSetSizes(Cmat,m,n,m,n);CHKERRQ(ierr);
198769f65d41SStefano Zampini   ierr = MatSetType(Cmat,MATSEQDENSE);CHKERRQ(ierr);
198869f65d41SStefano Zampini   ierr = MatSeqDenseSetPreallocation(Cmat,NULL);CHKERRQ(ierr);
198969f65d41SStefano Zampini 
199069f65d41SStefano Zampini   Cmat->assembled = PETSC_TRUE;
199169f65d41SStefano Zampini 
199269f65d41SStefano Zampini   *C = Cmat;
199369f65d41SStefano Zampini   PetscFunctionReturn(0);
199469f65d41SStefano Zampini }
199569f65d41SStefano Zampini 
199669f65d41SStefano Zampini PetscErrorCode MatMatTransposeMultNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C)
199769f65d41SStefano Zampini {
199869f65d41SStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
199969f65d41SStefano Zampini   Mat_SeqDense   *b = (Mat_SeqDense*)B->data;
200069f65d41SStefano Zampini   Mat_SeqDense   *c = (Mat_SeqDense*)C->data;
200169f65d41SStefano Zampini   PetscBLASInt   m,n,k;
200269f65d41SStefano Zampini   PetscScalar    _DOne=1.0,_DZero=0.0;
200369f65d41SStefano Zampini   PetscErrorCode ierr;
200469f65d41SStefano Zampini 
200569f65d41SStefano Zampini   PetscFunctionBegin;
200669f65d41SStefano Zampini   ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr);
200769f65d41SStefano Zampini   ierr = PetscBLASIntCast(B->rmap->n,&n);CHKERRQ(ierr);
200869f65d41SStefano Zampini   ierr = PetscBLASIntCast(A->cmap->n,&k);CHKERRQ(ierr);
200969f65d41SStefano Zampini   PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&m,&n,&k,&_DOne,a->v,&a->lda,b->v,&b->lda,&_DZero,c->v,&c->lda));
201069f65d41SStefano Zampini   PetscFunctionReturn(0);
201169f65d41SStefano Zampini }
201269f65d41SStefano Zampini 
201375648e8dSHong Zhang PetscErrorCode MatTransposeMatMult_SeqDense_SeqDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C)
2014a9fe9ddaSSatish Balay {
2015a9fe9ddaSSatish Balay   PetscErrorCode ierr;
2016a9fe9ddaSSatish Balay 
2017a9fe9ddaSSatish Balay   PetscFunctionBegin;
2018a9fe9ddaSSatish Balay   if (scall == MAT_INITIAL_MATRIX) {
20193ff4c91cSHong Zhang     ierr = PetscLogEventBegin(MAT_TransposeMatMultSymbolic,A,B,0,0);CHKERRQ(ierr);
202075648e8dSHong Zhang     ierr = MatTransposeMatMultSymbolic_SeqDense_SeqDense(A,B,fill,C);CHKERRQ(ierr);
20213ff4c91cSHong Zhang     ierr = PetscLogEventEnd(MAT_TransposeMatMultSymbolic,A,B,0,0);CHKERRQ(ierr);
2022a9fe9ddaSSatish Balay   }
20233ff4c91cSHong Zhang   ierr = PetscLogEventBegin(MAT_TransposeMatMultNumeric,A,B,0,0);CHKERRQ(ierr);
202475648e8dSHong Zhang   ierr = MatTransposeMatMultNumeric_SeqDense_SeqDense(A,B,*C);CHKERRQ(ierr);
20253ff4c91cSHong Zhang   ierr = PetscLogEventEnd(MAT_TransposeMatMultNumeric,A,B,0,0);CHKERRQ(ierr);
2026a9fe9ddaSSatish Balay   PetscFunctionReturn(0);
2027a9fe9ddaSSatish Balay }
2028a9fe9ddaSSatish Balay 
202975648e8dSHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat *C)
2030a9fe9ddaSSatish Balay {
2031ee16a9a1SHong Zhang   PetscErrorCode ierr;
2032d0f46423SBarry Smith   PetscInt       m=A->cmap->n,n=B->cmap->n;
2033ee16a9a1SHong Zhang   Mat            Cmat;
2034a9fe9ddaSSatish Balay 
2035ee16a9a1SHong Zhang   PetscFunctionBegin;
2036e32f2f54SBarry Smith   if (A->rmap->n != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"A->rmap->n %d != B->rmap->n %d\n",A->rmap->n,B->rmap->n);
2037ee16a9a1SHong Zhang   ierr = MatCreate(PETSC_COMM_SELF,&Cmat);CHKERRQ(ierr);
2038ee16a9a1SHong Zhang   ierr = MatSetSizes(Cmat,m,n,m,n);CHKERRQ(ierr);
2039ee16a9a1SHong Zhang   ierr = MatSetType(Cmat,MATSEQDENSE);CHKERRQ(ierr);
20400298fd71SBarry Smith   ierr = MatSeqDenseSetPreallocation(Cmat,NULL);CHKERRQ(ierr);
20412205254eSKarl Rupp 
2042ee16a9a1SHong Zhang   Cmat->assembled = PETSC_TRUE;
20432205254eSKarl Rupp 
2044ee16a9a1SHong Zhang   *C = Cmat;
2045ee16a9a1SHong Zhang   PetscFunctionReturn(0);
2046ee16a9a1SHong Zhang }
2047a9fe9ddaSSatish Balay 
204875648e8dSHong Zhang PetscErrorCode MatTransposeMatMultNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C)
2049a9fe9ddaSSatish Balay {
2050a9fe9ddaSSatish Balay   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
2051a9fe9ddaSSatish Balay   Mat_SeqDense   *b = (Mat_SeqDense*)B->data;
2052a9fe9ddaSSatish Balay   Mat_SeqDense   *c = (Mat_SeqDense*)C->data;
20530805154bSBarry Smith   PetscBLASInt   m,n,k;
2054a9fe9ddaSSatish Balay   PetscScalar    _DOne=1.0,_DZero=0.0;
2055c5df96a5SBarry Smith   PetscErrorCode ierr;
2056a9fe9ddaSSatish Balay 
2057a9fe9ddaSSatish Balay   PetscFunctionBegin;
20588208b9aeSStefano Zampini   ierr = PetscBLASIntCast(C->rmap->n,&m);CHKERRQ(ierr);
20598208b9aeSStefano Zampini   ierr = PetscBLASIntCast(C->cmap->n,&n);CHKERRQ(ierr);
2060c5df96a5SBarry Smith   ierr = PetscBLASIntCast(A->rmap->n,&k);CHKERRQ(ierr);
20615ca1cc5dSStefano Zampini   PetscStackCallBLAS("BLASgemm",BLASgemm_("T","N",&m,&n,&k,&_DOne,a->v,&a->lda,b->v,&b->lda,&_DZero,c->v,&c->lda));
2062a9fe9ddaSSatish Balay   PetscFunctionReturn(0);
2063a9fe9ddaSSatish Balay }
2064985db425SBarry Smith 
2065e0877f53SBarry Smith static PetscErrorCode MatGetRowMax_SeqDense(Mat A,Vec v,PetscInt idx[])
2066985db425SBarry Smith {
2067985db425SBarry Smith   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
2068985db425SBarry Smith   PetscErrorCode ierr;
2069d0f46423SBarry Smith   PetscInt       i,j,m = A->rmap->n,n = A->cmap->n,p;
2070985db425SBarry Smith   PetscScalar    *x;
2071985db425SBarry Smith   MatScalar      *aa = a->v;
2072985db425SBarry Smith 
2073985db425SBarry Smith   PetscFunctionBegin;
2074e32f2f54SBarry Smith   if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
2075985db425SBarry Smith 
2076985db425SBarry Smith   ierr = VecSet(v,0.0);CHKERRQ(ierr);
2077985db425SBarry Smith   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
2078985db425SBarry Smith   ierr = VecGetLocalSize(v,&p);CHKERRQ(ierr);
2079e32f2f54SBarry Smith   if (p != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector");
2080985db425SBarry Smith   for (i=0; i<m; i++) {
2081985db425SBarry Smith     x[i] = aa[i]; if (idx) idx[i] = 0;
2082985db425SBarry Smith     for (j=1; j<n; j++) {
2083985db425SBarry Smith       if (PetscRealPart(x[i]) < PetscRealPart(aa[i+m*j])) {x[i] = aa[i + m*j]; if (idx) idx[i] = j;}
2084985db425SBarry Smith     }
2085985db425SBarry Smith   }
2086985db425SBarry Smith   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
2087985db425SBarry Smith   PetscFunctionReturn(0);
2088985db425SBarry Smith }
2089985db425SBarry Smith 
2090e0877f53SBarry Smith static PetscErrorCode MatGetRowMaxAbs_SeqDense(Mat A,Vec v,PetscInt idx[])
2091985db425SBarry Smith {
2092985db425SBarry Smith   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
2093985db425SBarry Smith   PetscErrorCode ierr;
2094d0f46423SBarry Smith   PetscInt       i,j,m = A->rmap->n,n = A->cmap->n,p;
2095985db425SBarry Smith   PetscScalar    *x;
2096985db425SBarry Smith   PetscReal      atmp;
2097985db425SBarry Smith   MatScalar      *aa = a->v;
2098985db425SBarry Smith 
2099985db425SBarry Smith   PetscFunctionBegin;
2100e32f2f54SBarry Smith   if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
2101985db425SBarry Smith 
2102985db425SBarry Smith   ierr = VecSet(v,0.0);CHKERRQ(ierr);
2103985db425SBarry Smith   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
2104985db425SBarry Smith   ierr = VecGetLocalSize(v,&p);CHKERRQ(ierr);
2105e32f2f54SBarry Smith   if (p != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector");
2106985db425SBarry Smith   for (i=0; i<m; i++) {
21079189402eSHong Zhang     x[i] = PetscAbsScalar(aa[i]);
2108985db425SBarry Smith     for (j=1; j<n; j++) {
2109985db425SBarry Smith       atmp = PetscAbsScalar(aa[i+m*j]);
2110985db425SBarry Smith       if (PetscAbsScalar(x[i]) < atmp) {x[i] = atmp; if (idx) idx[i] = j;}
2111985db425SBarry Smith     }
2112985db425SBarry Smith   }
2113985db425SBarry Smith   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
2114985db425SBarry Smith   PetscFunctionReturn(0);
2115985db425SBarry Smith }
2116985db425SBarry Smith 
2117e0877f53SBarry Smith static PetscErrorCode MatGetRowMin_SeqDense(Mat A,Vec v,PetscInt idx[])
2118985db425SBarry Smith {
2119985db425SBarry Smith   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
2120985db425SBarry Smith   PetscErrorCode ierr;
2121d0f46423SBarry Smith   PetscInt       i,j,m = A->rmap->n,n = A->cmap->n,p;
2122985db425SBarry Smith   PetscScalar    *x;
2123985db425SBarry Smith   MatScalar      *aa = a->v;
2124985db425SBarry Smith 
2125985db425SBarry Smith   PetscFunctionBegin;
2126e32f2f54SBarry Smith   if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
2127985db425SBarry Smith 
2128985db425SBarry Smith   ierr = VecSet(v,0.0);CHKERRQ(ierr);
2129985db425SBarry Smith   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
2130985db425SBarry Smith   ierr = VecGetLocalSize(v,&p);CHKERRQ(ierr);
2131e32f2f54SBarry Smith   if (p != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector");
2132985db425SBarry Smith   for (i=0; i<m; i++) {
2133985db425SBarry Smith     x[i] = aa[i]; if (idx) idx[i] = 0;
2134985db425SBarry Smith     for (j=1; j<n; j++) {
2135985db425SBarry Smith       if (PetscRealPart(x[i]) > PetscRealPart(aa[i+m*j])) {x[i] = aa[i + m*j]; if (idx) idx[i] = j;}
2136985db425SBarry Smith     }
2137985db425SBarry Smith   }
2138985db425SBarry Smith   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
2139985db425SBarry Smith   PetscFunctionReturn(0);
2140985db425SBarry Smith }
2141985db425SBarry Smith 
2142e0877f53SBarry Smith static PetscErrorCode MatGetColumnVector_SeqDense(Mat A,Vec v,PetscInt col)
21438d0534beSBarry Smith {
21448d0534beSBarry Smith   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
21458d0534beSBarry Smith   PetscErrorCode ierr;
21468d0534beSBarry Smith   PetscScalar    *x;
21478d0534beSBarry Smith 
21488d0534beSBarry Smith   PetscFunctionBegin;
2149e32f2f54SBarry Smith   if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
21508d0534beSBarry Smith 
21518d0534beSBarry Smith   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
2152d0f46423SBarry Smith   ierr = PetscMemcpy(x,a->v+col*a->lda,A->rmap->n*sizeof(PetscScalar));CHKERRQ(ierr);
21538d0534beSBarry Smith   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
21548d0534beSBarry Smith   PetscFunctionReturn(0);
21558d0534beSBarry Smith }
21568d0534beSBarry Smith 
21570716a85fSBarry Smith 
21580716a85fSBarry Smith PetscErrorCode MatGetColumnNorms_SeqDense(Mat A,NormType type,PetscReal *norms)
21590716a85fSBarry Smith {
21600716a85fSBarry Smith   PetscErrorCode ierr;
21610716a85fSBarry Smith   PetscInt       i,j,m,n;
21620716a85fSBarry Smith   PetscScalar    *a;
21630716a85fSBarry Smith 
21640716a85fSBarry Smith   PetscFunctionBegin;
21650716a85fSBarry Smith   ierr = MatGetSize(A,&m,&n);CHKERRQ(ierr);
21660716a85fSBarry Smith   ierr = PetscMemzero(norms,n*sizeof(PetscReal));CHKERRQ(ierr);
21678c778c55SBarry Smith   ierr = MatDenseGetArray(A,&a);CHKERRQ(ierr);
21680716a85fSBarry Smith   if (type == NORM_2) {
21690716a85fSBarry Smith     for (i=0; i<n; i++) {
21700716a85fSBarry Smith       for (j=0; j<m; j++) {
21710716a85fSBarry Smith         norms[i] += PetscAbsScalar(a[j]*a[j]);
21720716a85fSBarry Smith       }
21730716a85fSBarry Smith       a += m;
21740716a85fSBarry Smith     }
21750716a85fSBarry Smith   } else if (type == NORM_1) {
21760716a85fSBarry Smith     for (i=0; i<n; i++) {
21770716a85fSBarry Smith       for (j=0; j<m; j++) {
21780716a85fSBarry Smith         norms[i] += PetscAbsScalar(a[j]);
21790716a85fSBarry Smith       }
21800716a85fSBarry Smith       a += m;
21810716a85fSBarry Smith     }
21820716a85fSBarry Smith   } else if (type == NORM_INFINITY) {
21830716a85fSBarry Smith     for (i=0; i<n; i++) {
21840716a85fSBarry Smith       for (j=0; j<m; j++) {
21850716a85fSBarry Smith         norms[i] = PetscMax(PetscAbsScalar(a[j]),norms[i]);
21860716a85fSBarry Smith       }
21870716a85fSBarry Smith       a += m;
21880716a85fSBarry Smith     }
2189ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Unknown NormType");
21908c778c55SBarry Smith   ierr = MatDenseRestoreArray(A,&a);CHKERRQ(ierr);
21910716a85fSBarry Smith   if (type == NORM_2) {
21928f1a2a5eSBarry Smith     for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]);
21930716a85fSBarry Smith   }
21940716a85fSBarry Smith   PetscFunctionReturn(0);
21950716a85fSBarry Smith }
21960716a85fSBarry Smith 
219773a71a0fSBarry Smith static PetscErrorCode  MatSetRandom_SeqDense(Mat x,PetscRandom rctx)
219873a71a0fSBarry Smith {
219973a71a0fSBarry Smith   PetscErrorCode ierr;
220073a71a0fSBarry Smith   PetscScalar    *a;
220173a71a0fSBarry Smith   PetscInt       m,n,i;
220273a71a0fSBarry Smith 
220373a71a0fSBarry Smith   PetscFunctionBegin;
220473a71a0fSBarry Smith   ierr = MatGetSize(x,&m,&n);CHKERRQ(ierr);
22058c778c55SBarry Smith   ierr = MatDenseGetArray(x,&a);CHKERRQ(ierr);
220673a71a0fSBarry Smith   for (i=0; i<m*n; i++) {
220773a71a0fSBarry Smith     ierr = PetscRandomGetValue(rctx,a+i);CHKERRQ(ierr);
220873a71a0fSBarry Smith   }
22098c778c55SBarry Smith   ierr = MatDenseRestoreArray(x,&a);CHKERRQ(ierr);
221073a71a0fSBarry Smith   PetscFunctionReturn(0);
221173a71a0fSBarry Smith }
221273a71a0fSBarry Smith 
22133b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_SeqDense(Mat A,PetscBool  *missing,PetscInt *d)
22143b49f96aSBarry Smith {
22153b49f96aSBarry Smith   PetscFunctionBegin;
22163b49f96aSBarry Smith   *missing = PETSC_FALSE;
22173b49f96aSBarry Smith   PetscFunctionReturn(0);
22183b49f96aSBarry Smith }
221973a71a0fSBarry Smith 
2220abc3b08eSStefano Zampini 
2221289bc588SBarry Smith /* -------------------------------------------------------------------*/
2222a5ae1ecdSBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_SeqDense,
2223905e6a2fSBarry Smith                                         MatGetRow_SeqDense,
2224905e6a2fSBarry Smith                                         MatRestoreRow_SeqDense,
2225905e6a2fSBarry Smith                                         MatMult_SeqDense,
222697304618SKris Buschelman                                 /*  4*/ MatMultAdd_SeqDense,
22277c922b88SBarry Smith                                         MatMultTranspose_SeqDense,
22287c922b88SBarry Smith                                         MatMultTransposeAdd_SeqDense,
2229db4efbfdSBarry Smith                                         0,
2230db4efbfdSBarry Smith                                         0,
2231db4efbfdSBarry Smith                                         0,
2232db4efbfdSBarry Smith                                 /* 10*/ 0,
2233905e6a2fSBarry Smith                                         MatLUFactor_SeqDense,
2234905e6a2fSBarry Smith                                         MatCholeskyFactor_SeqDense,
223541f059aeSBarry Smith                                         MatSOR_SeqDense,
2236ec8511deSBarry Smith                                         MatTranspose_SeqDense,
223797304618SKris Buschelman                                 /* 15*/ MatGetInfo_SeqDense,
2238905e6a2fSBarry Smith                                         MatEqual_SeqDense,
2239905e6a2fSBarry Smith                                         MatGetDiagonal_SeqDense,
2240905e6a2fSBarry Smith                                         MatDiagonalScale_SeqDense,
2241905e6a2fSBarry Smith                                         MatNorm_SeqDense,
2242c0aa2d19SHong Zhang                                 /* 20*/ MatAssemblyBegin_SeqDense,
2243c0aa2d19SHong Zhang                                         MatAssemblyEnd_SeqDense,
2244905e6a2fSBarry Smith                                         MatSetOption_SeqDense,
2245905e6a2fSBarry Smith                                         MatZeroEntries_SeqDense,
2246d519adbfSMatthew Knepley                                 /* 24*/ MatZeroRows_SeqDense,
2247db4efbfdSBarry Smith                                         0,
2248db4efbfdSBarry Smith                                         0,
2249db4efbfdSBarry Smith                                         0,
2250db4efbfdSBarry Smith                                         0,
22514994cf47SJed Brown                                 /* 29*/ MatSetUp_SeqDense,
2252273d9f13SBarry Smith                                         0,
2253905e6a2fSBarry Smith                                         0,
225473a71a0fSBarry Smith                                         0,
225573a71a0fSBarry Smith                                         0,
2256d519adbfSMatthew Knepley                                 /* 34*/ MatDuplicate_SeqDense,
2257a5ae1ecdSBarry Smith                                         0,
2258a5ae1ecdSBarry Smith                                         0,
2259a5ae1ecdSBarry Smith                                         0,
2260a5ae1ecdSBarry Smith                                         0,
2261d519adbfSMatthew Knepley                                 /* 39*/ MatAXPY_SeqDense,
22627dae84e0SHong Zhang                                         MatCreateSubMatrices_SeqDense,
2263a5ae1ecdSBarry Smith                                         0,
22644b0e389bSBarry Smith                                         MatGetValues_SeqDense,
2265a5ae1ecdSBarry Smith                                         MatCopy_SeqDense,
2266d519adbfSMatthew Knepley                                 /* 44*/ MatGetRowMax_SeqDense,
2267a5ae1ecdSBarry Smith                                         MatScale_SeqDense,
22687d68702bSBarry Smith                                         MatShift_Basic,
2269a5ae1ecdSBarry Smith                                         0,
22703f49a652SStefano Zampini                                         MatZeroRowsColumns_SeqDense,
227173a71a0fSBarry Smith                                 /* 49*/ MatSetRandom_SeqDense,
2272a5ae1ecdSBarry Smith                                         0,
2273a5ae1ecdSBarry Smith                                         0,
2274a5ae1ecdSBarry Smith                                         0,
2275a5ae1ecdSBarry Smith                                         0,
2276d519adbfSMatthew Knepley                                 /* 54*/ 0,
2277a5ae1ecdSBarry Smith                                         0,
2278a5ae1ecdSBarry Smith                                         0,
2279a5ae1ecdSBarry Smith                                         0,
2280a5ae1ecdSBarry Smith                                         0,
2281d519adbfSMatthew Knepley                                 /* 59*/ 0,
2282e03a110bSBarry Smith                                         MatDestroy_SeqDense,
2283e03a110bSBarry Smith                                         MatView_SeqDense,
2284357abbc8SBarry Smith                                         0,
228597304618SKris Buschelman                                         0,
2286d519adbfSMatthew Knepley                                 /* 64*/ 0,
228797304618SKris Buschelman                                         0,
228897304618SKris Buschelman                                         0,
228997304618SKris Buschelman                                         0,
229097304618SKris Buschelman                                         0,
2291d519adbfSMatthew Knepley                                 /* 69*/ MatGetRowMaxAbs_SeqDense,
229297304618SKris Buschelman                                         0,
229397304618SKris Buschelman                                         0,
229497304618SKris Buschelman                                         0,
229597304618SKris Buschelman                                         0,
2296d519adbfSMatthew Knepley                                 /* 74*/ 0,
229797304618SKris Buschelman                                         0,
229897304618SKris Buschelman                                         0,
229997304618SKris Buschelman                                         0,
230097304618SKris Buschelman                                         0,
2301d519adbfSMatthew Knepley                                 /* 79*/ 0,
230297304618SKris Buschelman                                         0,
230397304618SKris Buschelman                                         0,
230497304618SKris Buschelman                                         0,
23055bba2384SShri Abhyankar                                 /* 83*/ MatLoad_SeqDense,
2306865e5f61SKris Buschelman                                         0,
23071cbb95d3SBarry Smith                                         MatIsHermitian_SeqDense,
2308865e5f61SKris Buschelman                                         0,
2309865e5f61SKris Buschelman                                         0,
2310865e5f61SKris Buschelman                                         0,
2311d519adbfSMatthew Knepley                                 /* 89*/ MatMatMult_SeqDense_SeqDense,
2312a9fe9ddaSSatish Balay                                         MatMatMultSymbolic_SeqDense_SeqDense,
2313a9fe9ddaSSatish Balay                                         MatMatMultNumeric_SeqDense_SeqDense,
2314abc3b08eSStefano Zampini                                         MatPtAP_SeqDense_SeqDense,
2315abc3b08eSStefano Zampini                                         MatPtAPSymbolic_SeqDense_SeqDense,
2316abc3b08eSStefano Zampini                                 /* 94*/ MatPtAPNumeric_SeqDense_SeqDense,
231769f65d41SStefano Zampini                                         MatMatTransposeMult_SeqDense_SeqDense,
231869f65d41SStefano Zampini                                         MatMatTransposeMultSymbolic_SeqDense_SeqDense,
231969f65d41SStefano Zampini                                         MatMatTransposeMultNumeric_SeqDense_SeqDense,
2320284134d9SBarry Smith                                         0,
2321d519adbfSMatthew Knepley                                 /* 99*/ 0,
2322284134d9SBarry Smith                                         0,
2323284134d9SBarry Smith                                         0,
2324ba337c44SJed Brown                                         MatConjugate_SeqDense,
2325f73d5cc4SBarry Smith                                         0,
2326ba337c44SJed Brown                                 /*104*/ 0,
2327ba337c44SJed Brown                                         MatRealPart_SeqDense,
2328ba337c44SJed Brown                                         MatImaginaryPart_SeqDense,
2329985db425SBarry Smith                                         0,
2330985db425SBarry Smith                                         0,
23318208b9aeSStefano Zampini                                 /*109*/ 0,
2332985db425SBarry Smith                                         0,
23338d0534beSBarry Smith                                         MatGetRowMin_SeqDense,
2334aabbc4fbSShri Abhyankar                                         MatGetColumnVector_SeqDense,
23353b49f96aSBarry Smith                                         MatMissingDiagonal_SeqDense,
2336aabbc4fbSShri Abhyankar                                 /*114*/ 0,
2337aabbc4fbSShri Abhyankar                                         0,
2338aabbc4fbSShri Abhyankar                                         0,
2339aabbc4fbSShri Abhyankar                                         0,
2340aabbc4fbSShri Abhyankar                                         0,
2341aabbc4fbSShri Abhyankar                                 /*119*/ 0,
2342aabbc4fbSShri Abhyankar                                         0,
2343aabbc4fbSShri Abhyankar                                         0,
23440716a85fSBarry Smith                                         0,
23450716a85fSBarry Smith                                         0,
23460716a85fSBarry Smith                                 /*124*/ 0,
23475df89d91SHong Zhang                                         MatGetColumnNorms_SeqDense,
23485df89d91SHong Zhang                                         0,
23495df89d91SHong Zhang                                         0,
23505df89d91SHong Zhang                                         0,
23515df89d91SHong Zhang                                 /*129*/ 0,
235275648e8dSHong Zhang                                         MatTransposeMatMult_SeqDense_SeqDense,
235375648e8dSHong Zhang                                         MatTransposeMatMultSymbolic_SeqDense_SeqDense,
235475648e8dSHong Zhang                                         MatTransposeMatMultNumeric_SeqDense_SeqDense,
23553964eb88SJed Brown                                         0,
23563964eb88SJed Brown                                 /*134*/ 0,
23573964eb88SJed Brown                                         0,
23583964eb88SJed Brown                                         0,
23593964eb88SJed Brown                                         0,
23603964eb88SJed Brown                                         0,
23613964eb88SJed Brown                                 /*139*/ 0,
2362f9426fe0SMark Adams                                         0,
23633964eb88SJed Brown                                         0
2364985db425SBarry Smith };
236590ace30eSBarry Smith 
23664b828684SBarry Smith /*@C
2367fafbff53SBarry Smith    MatCreateSeqDense - Creates a sequential dense matrix that
2368d65003e9SLois Curfman McInnes    is stored in column major order (the usual Fortran 77 manner). Many
2369d65003e9SLois Curfman McInnes    of the matrix operations use the BLAS and LAPACK routines.
2370289bc588SBarry Smith 
2371db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
2372db81eaa0SLois Curfman McInnes 
237320563c6bSBarry Smith    Input Parameters:
2374db81eaa0SLois Curfman McInnes +  comm - MPI communicator, set to PETSC_COMM_SELF
23750c775827SLois Curfman McInnes .  m - number of rows
237618f449edSLois Curfman McInnes .  n - number of columns
23770298fd71SBarry Smith -  data - optional location of matrix data in column major order.  Set data=NULL for PETSc
2378dfc5480cSLois Curfman McInnes    to control all matrix memory allocation.
237920563c6bSBarry Smith 
238020563c6bSBarry Smith    Output Parameter:
238144cd7ae7SLois Curfman McInnes .  A - the matrix
238220563c6bSBarry Smith 
2383b259b22eSLois Curfman McInnes    Notes:
238418f449edSLois Curfman McInnes    The data input variable is intended primarily for Fortran programmers
238518f449edSLois Curfman McInnes    who wish to allocate their own matrix memory space.  Most users should
23860298fd71SBarry Smith    set data=NULL.
238718f449edSLois Curfman McInnes 
2388027ccd11SLois Curfman McInnes    Level: intermediate
2389027ccd11SLois Curfman McInnes 
2390dbd7a890SLois Curfman McInnes .keywords: dense, matrix, LAPACK, BLAS
2391d65003e9SLois Curfman McInnes 
239269b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateDense(), MatSetValues()
239320563c6bSBarry Smith @*/
23947087cfbeSBarry Smith PetscErrorCode  MatCreateSeqDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscScalar *data,Mat *A)
2395289bc588SBarry Smith {
2396dfbe8321SBarry Smith   PetscErrorCode ierr;
23973b2fbd54SBarry Smith 
23983a40ed3dSBarry Smith   PetscFunctionBegin;
2399f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2400f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr);
2401273d9f13SBarry Smith   ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr);
2402273d9f13SBarry Smith   ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr);
2403273d9f13SBarry Smith   PetscFunctionReturn(0);
2404273d9f13SBarry Smith }
2405273d9f13SBarry Smith 
2406273d9f13SBarry Smith /*@C
2407273d9f13SBarry Smith    MatSeqDenseSetPreallocation - Sets the array used for storing the matrix elements
2408273d9f13SBarry Smith 
2409273d9f13SBarry Smith    Collective on MPI_Comm
2410273d9f13SBarry Smith 
2411273d9f13SBarry Smith    Input Parameters:
24121c4f3114SJed Brown +  B - the matrix
24130298fd71SBarry Smith -  data - the array (or NULL)
2414273d9f13SBarry Smith 
2415273d9f13SBarry Smith    Notes:
2416273d9f13SBarry Smith    The data input variable is intended primarily for Fortran programmers
2417273d9f13SBarry Smith    who wish to allocate their own matrix memory space.  Most users should
2418284134d9SBarry Smith    need not call this routine.
2419273d9f13SBarry Smith 
2420273d9f13SBarry Smith    Level: intermediate
2421273d9f13SBarry Smith 
2422273d9f13SBarry Smith .keywords: dense, matrix, LAPACK, BLAS
2423273d9f13SBarry Smith 
242469b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateDense(), MatSetValues(), MatSeqDenseSetLDA()
2425867c911aSBarry Smith 
2426273d9f13SBarry Smith @*/
24277087cfbeSBarry Smith PetscErrorCode  MatSeqDenseSetPreallocation(Mat B,PetscScalar data[])
2428273d9f13SBarry Smith {
24294ac538c5SBarry Smith   PetscErrorCode ierr;
2430a23d5eceSKris Buschelman 
2431a23d5eceSKris Buschelman   PetscFunctionBegin;
24324ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatSeqDenseSetPreallocation_C",(Mat,PetscScalar[]),(B,data));CHKERRQ(ierr);
2433a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2434a23d5eceSKris Buschelman }
2435a23d5eceSKris Buschelman 
24367087cfbeSBarry Smith PetscErrorCode  MatSeqDenseSetPreallocation_SeqDense(Mat B,PetscScalar *data)
2437a23d5eceSKris Buschelman {
2438273d9f13SBarry Smith   Mat_SeqDense   *b;
2439dfbe8321SBarry Smith   PetscErrorCode ierr;
2440273d9f13SBarry Smith 
2441273d9f13SBarry Smith   PetscFunctionBegin;
2442273d9f13SBarry Smith   B->preallocated = PETSC_TRUE;
2443a868139aSShri Abhyankar 
244434ef9618SShri Abhyankar   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
244534ef9618SShri Abhyankar   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
244634ef9618SShri Abhyankar 
2447273d9f13SBarry Smith   b       = (Mat_SeqDense*)B->data;
244886d161a7SShri Abhyankar   b->Mmax = B->rmap->n;
244986d161a7SShri Abhyankar   b->Nmax = B->cmap->n;
245086d161a7SShri Abhyankar   if (b->lda <= 0 || b->changelda) b->lda = B->rmap->n;
245186d161a7SShri Abhyankar 
2452220afb94SBarry Smith   ierr = PetscIntMultError(b->lda,b->Nmax,NULL);CHKERRQ(ierr);
24539e8f95c4SLisandro Dalcin   if (!data) { /* petsc-allocated storage */
24549e8f95c4SLisandro Dalcin     if (!b->user_alloc) { ierr = PetscFree(b->v);CHKERRQ(ierr); }
2455e92229d0SSatish Balay     ierr = PetscCalloc1((size_t)b->lda*b->Nmax,&b->v);CHKERRQ(ierr);
24563bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)B,b->lda*b->Nmax*sizeof(PetscScalar));CHKERRQ(ierr);
24572205254eSKarl Rupp 
24589e8f95c4SLisandro Dalcin     b->user_alloc = PETSC_FALSE;
2459273d9f13SBarry Smith   } else { /* user-allocated storage */
24609e8f95c4SLisandro Dalcin     if (!b->user_alloc) { ierr = PetscFree(b->v);CHKERRQ(ierr); }
2461273d9f13SBarry Smith     b->v          = data;
2462273d9f13SBarry Smith     b->user_alloc = PETSC_TRUE;
2463273d9f13SBarry Smith   }
24640450473dSBarry Smith   B->assembled = PETSC_TRUE;
2465273d9f13SBarry Smith   PetscFunctionReturn(0);
2466273d9f13SBarry Smith }
2467273d9f13SBarry Smith 
246865b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
2469cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat)
24708baccfbdSHong Zhang {
2471d77f618aSHong Zhang   Mat            mat_elemental;
2472d77f618aSHong Zhang   PetscErrorCode ierr;
2473d77f618aSHong Zhang   PetscScalar    *array,*v_colwise;
2474d77f618aSHong Zhang   PetscInt       M=A->rmap->N,N=A->cmap->N,i,j,k,*rows,*cols;
2475d77f618aSHong Zhang 
24768baccfbdSHong Zhang   PetscFunctionBegin;
2477d77f618aSHong Zhang   ierr = PetscMalloc3(M*N,&v_colwise,M,&rows,N,&cols);CHKERRQ(ierr);
2478d77f618aSHong Zhang   ierr = MatDenseGetArray(A,&array);CHKERRQ(ierr);
2479d77f618aSHong Zhang   /* convert column-wise array into row-wise v_colwise, see MatSetValues_Elemental() */
2480d77f618aSHong Zhang   k = 0;
2481d77f618aSHong Zhang   for (j=0; j<N; j++) {
2482d77f618aSHong Zhang     cols[j] = j;
2483d77f618aSHong Zhang     for (i=0; i<M; i++) {
2484d77f618aSHong Zhang       v_colwise[j*M+i] = array[k++];
2485d77f618aSHong Zhang     }
2486d77f618aSHong Zhang   }
2487d77f618aSHong Zhang   for (i=0; i<M; i++) {
2488d77f618aSHong Zhang     rows[i] = i;
2489d77f618aSHong Zhang   }
2490d77f618aSHong Zhang   ierr = MatDenseRestoreArray(A,&array);CHKERRQ(ierr);
2491d77f618aSHong Zhang 
2492d77f618aSHong Zhang   ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr);
2493d77f618aSHong Zhang   ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,M,N);CHKERRQ(ierr);
2494d77f618aSHong Zhang   ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr);
2495d77f618aSHong Zhang   ierr = MatSetUp(mat_elemental);CHKERRQ(ierr);
2496d77f618aSHong Zhang 
2497d77f618aSHong Zhang   /* PETSc-Elemental interaface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */
2498d77f618aSHong Zhang   ierr = MatSetValues(mat_elemental,M,rows,N,cols,v_colwise,ADD_VALUES);CHKERRQ(ierr);
2499d77f618aSHong Zhang   ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2500d77f618aSHong Zhang   ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2501d77f618aSHong Zhang   ierr = PetscFree3(v_colwise,rows,cols);CHKERRQ(ierr);
2502d77f618aSHong Zhang 
2503511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
250428be2f97SBarry Smith     ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr);
2505d77f618aSHong Zhang   } else {
2506d77f618aSHong Zhang     *newmat = mat_elemental;
2507d77f618aSHong Zhang   }
25088baccfbdSHong Zhang   PetscFunctionReturn(0);
25098baccfbdSHong Zhang }
251065b80a83SHong Zhang #endif
25118baccfbdSHong Zhang 
25121b807ce4Svictorle /*@C
25131b807ce4Svictorle   MatSeqDenseSetLDA - Declare the leading dimension of the user-provided array
25141b807ce4Svictorle 
25151b807ce4Svictorle   Input parameter:
25161b807ce4Svictorle + A - the matrix
25171b807ce4Svictorle - lda - the leading dimension
25181b807ce4Svictorle 
25191b807ce4Svictorle   Notes:
2520867c911aSBarry Smith   This routine is to be used in conjunction with MatSeqDenseSetPreallocation();
25211b807ce4Svictorle   it asserts that the preallocation has a leading dimension (the LDA parameter
25221b807ce4Svictorle   of Blas and Lapack fame) larger than M, the first dimension of the matrix.
25231b807ce4Svictorle 
25241b807ce4Svictorle   Level: intermediate
25251b807ce4Svictorle 
25261b807ce4Svictorle .keywords: dense, matrix, LAPACK, BLAS
25271b807ce4Svictorle 
2528284134d9SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSeqDenseSetPreallocation(), MatSetMaximumSize()
2529867c911aSBarry Smith 
25301b807ce4Svictorle @*/
25317087cfbeSBarry Smith PetscErrorCode  MatSeqDenseSetLDA(Mat B,PetscInt lda)
25321b807ce4Svictorle {
25331b807ce4Svictorle   Mat_SeqDense *b = (Mat_SeqDense*)B->data;
253421a2c019SBarry Smith 
25351b807ce4Svictorle   PetscFunctionBegin;
2536e32f2f54SBarry Smith   if (lda < B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"LDA %D must be at least matrix dimension %D",lda,B->rmap->n);
25371b807ce4Svictorle   b->lda       = lda;
253821a2c019SBarry Smith   b->changelda = PETSC_FALSE;
253921a2c019SBarry Smith   b->Mmax      = PetscMax(b->Mmax,lda);
25401b807ce4Svictorle   PetscFunctionReturn(0);
25411b807ce4Svictorle }
25421b807ce4Svictorle 
25430bad9183SKris Buschelman /*MC
2544fafad747SKris Buschelman    MATSEQDENSE - MATSEQDENSE = "seqdense" - A matrix type to be used for sequential dense matrices.
25450bad9183SKris Buschelman 
25460bad9183SKris Buschelman    Options Database Keys:
25470bad9183SKris Buschelman . -mat_type seqdense - sets the matrix type to "seqdense" during a call to MatSetFromOptions()
25480bad9183SKris Buschelman 
25490bad9183SKris Buschelman   Level: beginner
25500bad9183SKris Buschelman 
255189665df3SBarry Smith .seealso: MatCreateSeqDense()
255289665df3SBarry Smith 
25530bad9183SKris Buschelman M*/
25540bad9183SKris Buschelman 
25558cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_SeqDense(Mat B)
2556273d9f13SBarry Smith {
2557273d9f13SBarry Smith   Mat_SeqDense   *b;
2558dfbe8321SBarry Smith   PetscErrorCode ierr;
25597c334f02SBarry Smith   PetscMPIInt    size;
2560273d9f13SBarry Smith 
2561273d9f13SBarry Smith   PetscFunctionBegin;
2562ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr);
2563e32f2f54SBarry Smith   if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Comm must be of size 1");
256455659b69SBarry Smith 
2565b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
2566549d3d68SSatish Balay   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
256744cd7ae7SLois Curfman McInnes   B->data = (void*)b;
256818f449edSLois Curfman McInnes 
2569273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
25704e220ebcSLois Curfman McInnes 
2571bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetArray_C",MatDenseGetArray_SeqDense);CHKERRQ(ierr);
2572d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDensePlaceArray_C",MatDensePlaceArray_SeqDense);CHKERRQ(ierr);
2573d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseResetArray_C",MatDenseResetArray_SeqDense);CHKERRQ(ierr);
2574bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreArray_C",MatDenseRestoreArray_SeqDense);CHKERRQ(ierr);
2575bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqdense_seqaij_C",MatConvert_SeqDense_SeqAIJ);CHKERRQ(ierr);
25768baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
25778baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqdense_elemental_C",MatConvert_SeqDense_Elemental);CHKERRQ(ierr);
25788baccfbdSHong Zhang #endif
2579bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqDenseSetPreallocation_C",MatSeqDenseSetPreallocation_SeqDense);CHKERRQ(ierr);
2580bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMatMult_seqaij_seqdense_C",MatMatMult_SeqAIJ_SeqDense);CHKERRQ(ierr);
2581bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMatMultSymbolic_seqaij_seqdense_C",MatMatMultSymbolic_SeqAIJ_SeqDense);CHKERRQ(ierr);
2582bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMatMultNumeric_seqaij_seqdense_C",MatMatMultNumeric_SeqAIJ_SeqDense);CHKERRQ(ierr);
2583abc3b08eSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatPtAP_seqaij_seqdense_C",MatPtAP_SeqDense_SeqDense);CHKERRQ(ierr);
25844099cc6bSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMatMult_seqaijperm_seqdense_C",MatMatMult_SeqAIJ_SeqDense);CHKERRQ(ierr);
25854099cc6bSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMatMultSymbolic_seqaijperm_seqdense_C",MatMatMultSymbolic_SeqAIJ_SeqDense);CHKERRQ(ierr);
25864099cc6bSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMatMultNumeric_seqaijperm_seqdense_C",MatMatMultNumeric_SeqAIJ_SeqDense);CHKERRQ(ierr);
25874099cc6bSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatPtAP_seqaijperm_seqdense_C",MatPtAP_SeqDense_SeqDense);CHKERRQ(ierr);
258896e6d5c4SRichard Tran Mills   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMatMult_seqaijmkl_seqdense_C",MatMatMult_SeqAIJ_SeqDense);CHKERRQ(ierr);
258996e6d5c4SRichard Tran Mills   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMatMultSymbolic_seqaijmkl_seqdense_C",MatMatMultSymbolic_SeqAIJ_SeqDense);CHKERRQ(ierr);
259096e6d5c4SRichard Tran Mills   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMatMultNumeric_seqaijmkl_seqdense_C",MatMatMultNumeric_SeqAIJ_SeqDense);CHKERRQ(ierr);
259196e6d5c4SRichard Tran Mills   ierr = PetscObjectComposeFunction((PetscObject)B,"MatPtAP_seqaijmkl_seqdense_C",MatPtAP_SeqDense_SeqDense);CHKERRQ(ierr);
259296e6d5c4SRichard Tran Mills 
25933bf78175SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatTransposeMatMult_seqaij_seqdense_C",MatTransposeMatMult_SeqAIJ_SeqDense);CHKERRQ(ierr);
25943bf78175SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatTransposeMatMultSymbolic_seqaij_seqdense_C",MatTransposeMatMultSymbolic_SeqAIJ_SeqDense);CHKERRQ(ierr);
25953bf78175SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)B,"MatTransposeMatMultNumeric_seqaij_seqdense_C",MatTransposeMatMultNumeric_SeqAIJ_SeqDense);CHKERRQ(ierr);
25964099cc6bSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatTransposeMatMult_seqaijperm_seqdense_C",MatTransposeMatMult_SeqAIJ_SeqDense);CHKERRQ(ierr);
25974099cc6bSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatTransposeMatMultSymbolic_seqaijperm_seqdense_C",MatTransposeMatMultSymbolic_SeqAIJ_SeqDense);CHKERRQ(ierr);
25984099cc6bSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatTransposeMatMultNumeric_seqaijperm_seqdense_C",MatTransposeMatMultNumeric_SeqAIJ_SeqDense);CHKERRQ(ierr);
259996e6d5c4SRichard Tran Mills 
260096e6d5c4SRichard Tran Mills   ierr = PetscObjectComposeFunction((PetscObject)B,"MatTransposeMatMult_seqaijmkl_seqdense_C",MatTransposeMatMult_SeqAIJ_SeqDense);CHKERRQ(ierr);
260196e6d5c4SRichard Tran Mills   ierr = PetscObjectComposeFunction((PetscObject)B,"MatTransposeMatMultSymbolic_seqaijmkl_seqdense_C",MatTransposeMatMultSymbolic_SeqAIJ_SeqDense);CHKERRQ(ierr);
260296e6d5c4SRichard Tran Mills   ierr = PetscObjectComposeFunction((PetscObject)B,"MatTransposeMatMultNumeric_seqaijmkl_seqdense_C",MatTransposeMatMultNumeric_SeqAIJ_SeqDense);CHKERRQ(ierr);
260317667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQDENSE);CHKERRQ(ierr);
26043a40ed3dSBarry Smith   PetscFunctionReturn(0);
2605289bc588SBarry Smith }
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