1be1d678aSKris Buschelman 267e560aaSBarry Smith /* 367e560aaSBarry Smith Defines the basic matrix operations for sequential dense. 467e560aaSBarry Smith */ 5289bc588SBarry Smith 6dec5eb66SMatthew G Knepley #include <../src/mat/impls/dense/seq/dense.h> /*I "petscmat.h" I*/ 7c6db04a5SJed Brown #include <petscblaslapack.h> 8289bc588SBarry Smith 96a63e612SBarry Smith #include <../src/mat/impls/aij/seq/aij.h> 10b2573a8aSBarry Smith 118c178816SStefano Zampini static PetscErrorCode MatSeqDenseSymmetrize_Private(Mat A, PetscBool hermitian) 128c178816SStefano Zampini { 138c178816SStefano Zampini Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 148c178816SStefano Zampini PetscInt j, k, n = A->rmap->n; 158c178816SStefano Zampini 168c178816SStefano Zampini PetscFunctionBegin; 178c178816SStefano Zampini if (A->rmap->n != A->cmap->n) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Cannot symmetrize a rectangular matrix"); 188c178816SStefano Zampini if (!hermitian) { 198c178816SStefano Zampini for (k=0;k<n;k++) { 208c178816SStefano Zampini for (j=k;j<n;j++) { 218c178816SStefano Zampini mat->v[j*mat->lda + k] = mat->v[k*mat->lda + j]; 228c178816SStefano Zampini } 238c178816SStefano Zampini } 248c178816SStefano Zampini } else { 258c178816SStefano Zampini for (k=0;k<n;k++) { 268c178816SStefano Zampini for (j=k;j<n;j++) { 278c178816SStefano Zampini mat->v[j*mat->lda + k] = PetscConj(mat->v[k*mat->lda + j]); 288c178816SStefano Zampini } 298c178816SStefano Zampini } 308c178816SStefano Zampini } 318c178816SStefano Zampini PetscFunctionReturn(0); 328c178816SStefano Zampini } 338c178816SStefano Zampini 3405709791SSatish Balay PETSC_EXTERN PetscErrorCode MatSeqDenseInvertFactors_Private(Mat A) 358c178816SStefano Zampini { 368c178816SStefano Zampini #if defined(PETSC_MISSING_LAPACK_POTRF) 378c178816SStefano Zampini PetscFunctionBegin; 388c178816SStefano Zampini SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"POTRF - Lapack routine is unavailable."); 398c178816SStefano Zampini #else 408c178816SStefano Zampini Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 418c178816SStefano Zampini PetscErrorCode ierr; 428c178816SStefano Zampini PetscBLASInt info,n; 438c178816SStefano Zampini 448c178816SStefano Zampini PetscFunctionBegin; 458c178816SStefano Zampini if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 468c178816SStefano Zampini ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr); 478c178816SStefano Zampini if (A->factortype == MAT_FACTOR_LU) { 488c178816SStefano Zampini if (!mat->pivots) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Pivots not present"); 498c178816SStefano Zampini if (!mat->fwork) { 508c178816SStefano Zampini mat->lfwork = n; 518c178816SStefano Zampini ierr = PetscMalloc1(mat->lfwork,&mat->fwork);CHKERRQ(ierr); 528c178816SStefano Zampini ierr = PetscLogObjectMemory((PetscObject)A,mat->lfwork*sizeof(PetscBLASInt));CHKERRQ(ierr); 538c178816SStefano Zampini } 548c178816SStefano Zampini PetscStackCallBLAS("LAPACKgetri",LAPACKgetri_(&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&mat->lfwork,&info)); 558c178816SStefano Zampini ierr = PetscLogFlops((1.0*A->cmap->n*A->cmap->n*A->cmap->n)/3.0);CHKERRQ(ierr); /* TODO CHECK FLOPS */ 568c178816SStefano Zampini } else if (A->factortype == MAT_FACTOR_CHOLESKY) { 578c178816SStefano Zampini if (A->spd) { 588c178816SStefano Zampini PetscStackCallBLAS("LAPACKpotri",LAPACKpotri_("L",&n,mat->v,&mat->lda,&info)); 598c178816SStefano Zampini ierr = MatSeqDenseSymmetrize_Private(A,PETSC_TRUE);CHKERRQ(ierr); 608c178816SStefano Zampini #if defined (PETSC_USE_COMPLEX) 618c178816SStefano Zampini } else if (A->hermitian) { 628c178816SStefano Zampini if (!mat->pivots) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Pivots not present"); 638c178816SStefano Zampini if (!mat->fwork) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Fwork not present"); 648c178816SStefano Zampini PetscStackCallBLAS("LAPACKhetri",LAPACKhetri_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&info)); 658c178816SStefano Zampini ierr = MatSeqDenseSymmetrize_Private(A,PETSC_TRUE);CHKERRQ(ierr); 668c178816SStefano Zampini #endif 678c178816SStefano Zampini } else { /* symmetric case */ 688c178816SStefano Zampini if (!mat->pivots) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Pivots not present"); 698c178816SStefano Zampini if (!mat->fwork) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Fwork not present"); 708c178816SStefano Zampini PetscStackCallBLAS("LAPACKsytri",LAPACKsytri_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&info)); 718c178816SStefano Zampini ierr = MatSeqDenseSymmetrize_Private(A,PETSC_FALSE);CHKERRQ(ierr); 728c178816SStefano Zampini } 738c178816SStefano Zampini if (info) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_MAT_CH_ZRPVT,"Bad Inversion: zero pivot in row %D",(PetscInt)info-1); 748c178816SStefano Zampini ierr = PetscLogFlops((1.0*A->cmap->n*A->cmap->n*A->cmap->n)/3.0);CHKERRQ(ierr); /* TODO CHECK FLOPS */ 758c178816SStefano Zampini } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Matrix must be factored to solve"); 768c178816SStefano Zampini #endif 778c178816SStefano Zampini 788c178816SStefano Zampini A->ops->solve = NULL; 798c178816SStefano Zampini A->ops->matsolve = NULL; 808c178816SStefano Zampini A->ops->solvetranspose = NULL; 818c178816SStefano Zampini A->ops->matsolvetranspose = NULL; 828c178816SStefano Zampini A->ops->solveadd = NULL; 838c178816SStefano Zampini A->ops->solvetransposeadd = NULL; 848c178816SStefano Zampini A->factortype = MAT_FACTOR_NONE; 858c178816SStefano Zampini ierr = PetscFree(A->solvertype);CHKERRQ(ierr); 868c178816SStefano Zampini PetscFunctionReturn(0); 878c178816SStefano Zampini } 888c178816SStefano Zampini 893f49a652SStefano Zampini PetscErrorCode MatZeroRowsColumns_SeqDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 903f49a652SStefano Zampini { 913f49a652SStefano Zampini PetscErrorCode ierr; 923f49a652SStefano Zampini Mat_SeqDense *l = (Mat_SeqDense*)A->data; 933f49a652SStefano Zampini PetscInt m = l->lda, n = A->cmap->n,r = A->rmap->n, i,j; 943f49a652SStefano Zampini PetscScalar *slot,*bb; 953f49a652SStefano Zampini const PetscScalar *xx; 963f49a652SStefano Zampini 973f49a652SStefano Zampini PetscFunctionBegin; 983f49a652SStefano Zampini #if defined(PETSC_USE_DEBUG) 993f49a652SStefano Zampini for (i=0; i<N; i++) { 1003f49a652SStefano Zampini if (rows[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row requested to be zeroed"); 1013f49a652SStefano Zampini if (rows[i] >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D requested to be zeroed greater than or equal number of rows %D",rows[i],A->rmap->n); 1023f49a652SStefano Zampini if (rows[i] >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Col %D requested to be zeroed greater than or equal number of cols %D",rows[i],A->cmap->n); 1033f49a652SStefano Zampini } 1043f49a652SStefano Zampini #endif 1053f49a652SStefano Zampini 1063f49a652SStefano Zampini /* fix right hand side if needed */ 1073f49a652SStefano Zampini if (x && b) { 1083f49a652SStefano Zampini ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr); 1093f49a652SStefano Zampini ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 1103f49a652SStefano Zampini for (i=0; i<N; i++) bb[rows[i]] = diag*xx[rows[i]]; 1113f49a652SStefano Zampini ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr); 1123f49a652SStefano Zampini ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 1133f49a652SStefano Zampini } 1143f49a652SStefano Zampini 1153f49a652SStefano Zampini for (i=0; i<N; i++) { 1163f49a652SStefano Zampini slot = l->v + rows[i]*m; 1173f49a652SStefano Zampini ierr = PetscMemzero(slot,r*sizeof(PetscScalar));CHKERRQ(ierr); 1183f49a652SStefano Zampini } 1193f49a652SStefano Zampini for (i=0; i<N; i++) { 1203f49a652SStefano Zampini slot = l->v + rows[i]; 1213f49a652SStefano Zampini for (j=0; j<n; j++) { *slot = 0.0; slot += m;} 1223f49a652SStefano Zampini } 1233f49a652SStefano Zampini if (diag != 0.0) { 1243f49a652SStefano Zampini if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only coded for square matrices"); 1253f49a652SStefano Zampini for (i=0; i<N; i++) { 1263f49a652SStefano Zampini slot = l->v + (m+1)*rows[i]; 1273f49a652SStefano Zampini *slot = diag; 1283f49a652SStefano Zampini } 1293f49a652SStefano Zampini } 1303f49a652SStefano Zampini PetscFunctionReturn(0); 1313f49a652SStefano Zampini } 1323f49a652SStefano Zampini 133abc3b08eSStefano Zampini PetscErrorCode MatPtAPNumeric_SeqDense_SeqDense(Mat A,Mat P,Mat C) 134abc3b08eSStefano Zampini { 135abc3b08eSStefano Zampini Mat_SeqDense *c = (Mat_SeqDense*)(C->data); 136abc3b08eSStefano Zampini PetscErrorCode ierr; 137abc3b08eSStefano Zampini 138abc3b08eSStefano Zampini PetscFunctionBegin; 139abc3b08eSStefano Zampini ierr = MatMatMultNumeric_SeqDense_SeqDense(A,P,c->ptapwork);CHKERRQ(ierr); 140abc3b08eSStefano Zampini ierr = MatTransposeMatMultNumeric_SeqDense_SeqDense(P,c->ptapwork,C);CHKERRQ(ierr); 141abc3b08eSStefano Zampini PetscFunctionReturn(0); 142abc3b08eSStefano Zampini } 143abc3b08eSStefano Zampini 144abc3b08eSStefano Zampini PetscErrorCode MatPtAPSymbolic_SeqDense_SeqDense(Mat A,Mat P,PetscReal fill,Mat *C) 145abc3b08eSStefano Zampini { 146abc3b08eSStefano Zampini Mat_SeqDense *c; 147abc3b08eSStefano Zampini PetscErrorCode ierr; 148abc3b08eSStefano Zampini 149abc3b08eSStefano Zampini PetscFunctionBegin; 150abc3b08eSStefano Zampini ierr = MatCreateSeqDense(PetscObjectComm((PetscObject)A),P->cmap->N,P->cmap->N,NULL,C);CHKERRQ(ierr); 151abc3b08eSStefano Zampini c = (Mat_SeqDense*)((*C)->data); 152abc3b08eSStefano Zampini ierr = MatCreateSeqDense(PetscObjectComm((PetscObject)A),A->rmap->N,P->cmap->N,NULL,&c->ptapwork);CHKERRQ(ierr); 153abc3b08eSStefano Zampini PetscFunctionReturn(0); 154abc3b08eSStefano Zampini } 155abc3b08eSStefano Zampini 156150d2497SBarry Smith PETSC_INTERN PetscErrorCode MatPtAP_SeqDense_SeqDense(Mat A,Mat P,MatReuse reuse,PetscReal fill,Mat *C) 157abc3b08eSStefano Zampini { 158abc3b08eSStefano Zampini PetscErrorCode ierr; 159abc3b08eSStefano Zampini 160abc3b08eSStefano Zampini PetscFunctionBegin; 161abc3b08eSStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 162abc3b08eSStefano Zampini ierr = MatPtAPSymbolic_SeqDense_SeqDense(A,P,fill,C);CHKERRQ(ierr); 163abc3b08eSStefano Zampini } 164abc3b08eSStefano Zampini ierr = PetscLogEventBegin(MAT_PtAPNumeric,A,P,0,0);CHKERRQ(ierr); 165abc3b08eSStefano Zampini ierr = (*(*C)->ops->ptapnumeric)(A,P,*C);CHKERRQ(ierr); 166abc3b08eSStefano Zampini ierr = PetscLogEventEnd(MAT_PtAPNumeric,A,P,0,0);CHKERRQ(ierr); 167abc3b08eSStefano Zampini PetscFunctionReturn(0); 168abc3b08eSStefano Zampini } 169abc3b08eSStefano Zampini 170cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqAIJ_SeqDense(Mat A,MatType newtype,MatReuse reuse,Mat *newmat) 171b49cda9fSStefano Zampini { 172a13144ffSStefano Zampini Mat B = NULL; 173b49cda9fSStefano Zampini Mat_SeqAIJ *a = (Mat_SeqAIJ*)A->data; 174b49cda9fSStefano Zampini Mat_SeqDense *b; 175b49cda9fSStefano Zampini PetscErrorCode ierr; 176b49cda9fSStefano Zampini PetscInt *ai=a->i,*aj=a->j,m=A->rmap->N,n=A->cmap->N,i; 177b49cda9fSStefano Zampini MatScalar *av=a->a; 178a13144ffSStefano Zampini PetscBool isseqdense; 179b49cda9fSStefano Zampini 180b49cda9fSStefano Zampini PetscFunctionBegin; 181a13144ffSStefano Zampini if (reuse == MAT_REUSE_MATRIX) { 182a13144ffSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)*newmat,MATSEQDENSE,&isseqdense);CHKERRQ(ierr); 183a13144ffSStefano Zampini if (!isseqdense) SETERRQ1(PetscObjectComm((PetscObject)*newmat),PETSC_ERR_USER,"Cannot reuse matrix of type %s",((PetscObject)(*newmat))->type); 184a13144ffSStefano Zampini } 185a13144ffSStefano Zampini if (reuse != MAT_REUSE_MATRIX) { 186b49cda9fSStefano Zampini ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 187b49cda9fSStefano Zampini ierr = MatSetSizes(B,m,n,m,n);CHKERRQ(ierr); 188b49cda9fSStefano Zampini ierr = MatSetType(B,MATSEQDENSE);CHKERRQ(ierr); 189b49cda9fSStefano Zampini ierr = MatSeqDenseSetPreallocation(B,NULL);CHKERRQ(ierr); 190b49cda9fSStefano Zampini b = (Mat_SeqDense*)(B->data); 191a13144ffSStefano Zampini } else { 192a13144ffSStefano Zampini b = (Mat_SeqDense*)((*newmat)->data); 193a13144ffSStefano Zampini ierr = PetscMemzero(b->v,m*n*sizeof(PetscScalar));CHKERRQ(ierr); 194a13144ffSStefano Zampini } 195b49cda9fSStefano Zampini for (i=0; i<m; i++) { 196b49cda9fSStefano Zampini PetscInt j; 197b49cda9fSStefano Zampini for (j=0;j<ai[1]-ai[0];j++) { 198b49cda9fSStefano Zampini b->v[*aj*m+i] = *av; 199b49cda9fSStefano Zampini aj++; 200b49cda9fSStefano Zampini av++; 201b49cda9fSStefano Zampini } 202b49cda9fSStefano Zampini ai++; 203b49cda9fSStefano Zampini } 204b49cda9fSStefano Zampini 205511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 206a13144ffSStefano Zampini ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 207a13144ffSStefano Zampini ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 20828be2f97SBarry Smith ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr); 209b49cda9fSStefano Zampini } else { 210a13144ffSStefano Zampini if (B) *newmat = B; 211a13144ffSStefano Zampini ierr = MatAssemblyBegin(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 212a13144ffSStefano Zampini ierr = MatAssemblyEnd(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 213b49cda9fSStefano Zampini } 214b49cda9fSStefano Zampini PetscFunctionReturn(0); 215b49cda9fSStefano Zampini } 216b49cda9fSStefano Zampini 217cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqDense_SeqAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 2186a63e612SBarry Smith { 2196a63e612SBarry Smith Mat B; 2206a63e612SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 2216a63e612SBarry Smith PetscErrorCode ierr; 2229399e1b8SMatthew G. Knepley PetscInt i, j; 2239399e1b8SMatthew G. Knepley PetscInt *rows, *nnz; 2249399e1b8SMatthew G. Knepley MatScalar *aa = a->v, *vals; 2256a63e612SBarry Smith 2266a63e612SBarry Smith PetscFunctionBegin; 227ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 2286a63e612SBarry Smith ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 2296a63e612SBarry Smith ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr); 2309399e1b8SMatthew G. Knepley ierr = PetscCalloc3(A->rmap->n,&rows,A->rmap->n,&nnz,A->rmap->n,&vals);CHKERRQ(ierr); 2319399e1b8SMatthew G. Knepley for (j=0; j<A->cmap->n; j++) { 2329399e1b8SMatthew G. Knepley for (i=0; i<A->rmap->n; i++) if (aa[i] != 0.0 || i == j) ++nnz[i]; 2336a63e612SBarry Smith aa += a->lda; 2346a63e612SBarry Smith } 2359399e1b8SMatthew G. Knepley ierr = MatSeqAIJSetPreallocation(B,PETSC_DETERMINE,nnz);CHKERRQ(ierr); 2369399e1b8SMatthew G. Knepley aa = a->v; 2379399e1b8SMatthew G. Knepley for (j=0; j<A->cmap->n; j++) { 2389399e1b8SMatthew G. Knepley PetscInt numRows = 0; 2399399e1b8SMatthew G. Knepley for (i=0; i<A->rmap->n; i++) if (aa[i] != 0.0 || i == j) {rows[numRows] = i; vals[numRows++] = aa[i];} 2409399e1b8SMatthew G. Knepley ierr = MatSetValues(B,numRows,rows,1,&j,vals,INSERT_VALUES);CHKERRQ(ierr); 2419399e1b8SMatthew G. Knepley aa += a->lda; 2429399e1b8SMatthew G. Knepley } 2439399e1b8SMatthew G. Knepley ierr = PetscFree3(rows,nnz,vals);CHKERRQ(ierr); 2446a63e612SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2456a63e612SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2466a63e612SBarry Smith 247511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 24828be2f97SBarry Smith ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr); 2496a63e612SBarry Smith } else { 2506a63e612SBarry Smith *newmat = B; 2516a63e612SBarry Smith } 2526a63e612SBarry Smith PetscFunctionReturn(0); 2536a63e612SBarry Smith } 2546a63e612SBarry Smith 255e0877f53SBarry Smith static PetscErrorCode MatAXPY_SeqDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 2561987afe7SBarry Smith { 2571987afe7SBarry Smith Mat_SeqDense *x = (Mat_SeqDense*)X->data,*y = (Mat_SeqDense*)Y->data; 258f4df32b1SMatthew Knepley PetscScalar oalpha = alpha; 25913f74950SBarry Smith PetscInt j; 2600805154bSBarry Smith PetscBLASInt N,m,ldax,lday,one = 1; 261efee365bSSatish Balay PetscErrorCode ierr; 2623a40ed3dSBarry Smith 2633a40ed3dSBarry Smith PetscFunctionBegin; 264c5df96a5SBarry Smith ierr = PetscBLASIntCast(X->rmap->n*X->cmap->n,&N);CHKERRQ(ierr); 265c5df96a5SBarry Smith ierr = PetscBLASIntCast(X->rmap->n,&m);CHKERRQ(ierr); 266c5df96a5SBarry Smith ierr = PetscBLASIntCast(x->lda,&ldax);CHKERRQ(ierr); 267c5df96a5SBarry Smith ierr = PetscBLASIntCast(y->lda,&lday);CHKERRQ(ierr); 268a5ce6ee0Svictorle if (ldax>m || lday>m) { 269d0f46423SBarry Smith for (j=0; j<X->cmap->n; j++) { 2708b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&m,&oalpha,x->v+j*ldax,&one,y->v+j*lday,&one)); 271a5ce6ee0Svictorle } 272a5ce6ee0Svictorle } else { 2738b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&N,&oalpha,x->v,&one,y->v,&one)); 274a5ce6ee0Svictorle } 275a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 2760450473dSBarry Smith ierr = PetscLogFlops(PetscMax(2*N-1,0));CHKERRQ(ierr); 2773a40ed3dSBarry Smith PetscFunctionReturn(0); 2781987afe7SBarry Smith } 2791987afe7SBarry Smith 280e0877f53SBarry Smith static PetscErrorCode MatGetInfo_SeqDense(Mat A,MatInfoType flag,MatInfo *info) 281289bc588SBarry Smith { 282d0f46423SBarry Smith PetscInt N = A->rmap->n*A->cmap->n; 2833a40ed3dSBarry Smith 2843a40ed3dSBarry Smith PetscFunctionBegin; 2854e220ebcSLois Curfman McInnes info->block_size = 1.0; 2864e220ebcSLois Curfman McInnes info->nz_allocated = (double)N; 2876de62eeeSBarry Smith info->nz_used = (double)N; 2886de62eeeSBarry Smith info->nz_unneeded = (double)0; 2894e220ebcSLois Curfman McInnes info->assemblies = (double)A->num_ass; 2904e220ebcSLois Curfman McInnes info->mallocs = 0; 2917adad957SLisandro Dalcin info->memory = ((PetscObject)A)->mem; 2924e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; 2934e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 2944e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 2953a40ed3dSBarry Smith PetscFunctionReturn(0); 296289bc588SBarry Smith } 297289bc588SBarry Smith 298e0877f53SBarry Smith static PetscErrorCode MatScale_SeqDense(Mat A,PetscScalar alpha) 29980cd9d93SLois Curfman McInnes { 300273d9f13SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 301f4df32b1SMatthew Knepley PetscScalar oalpha = alpha; 302efee365bSSatish Balay PetscErrorCode ierr; 303c5df96a5SBarry Smith PetscBLASInt one = 1,j,nz,lda; 30480cd9d93SLois Curfman McInnes 3053a40ed3dSBarry Smith PetscFunctionBegin; 306c5df96a5SBarry Smith ierr = PetscBLASIntCast(a->lda,&lda);CHKERRQ(ierr); 307d0f46423SBarry Smith if (lda>A->rmap->n) { 308c5df96a5SBarry Smith ierr = PetscBLASIntCast(A->rmap->n,&nz);CHKERRQ(ierr); 309d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 3108b83055fSJed Brown PetscStackCallBLAS("BLASscal",BLASscal_(&nz,&oalpha,a->v+j*lda,&one)); 311a5ce6ee0Svictorle } 312a5ce6ee0Svictorle } else { 313c5df96a5SBarry Smith ierr = PetscBLASIntCast(A->rmap->n*A->cmap->n,&nz);CHKERRQ(ierr); 3148b83055fSJed Brown PetscStackCallBLAS("BLASscal",BLASscal_(&nz,&oalpha,a->v,&one)); 315a5ce6ee0Svictorle } 316efee365bSSatish Balay ierr = PetscLogFlops(nz);CHKERRQ(ierr); 3173a40ed3dSBarry Smith PetscFunctionReturn(0); 31880cd9d93SLois Curfman McInnes } 31980cd9d93SLois Curfman McInnes 320e0877f53SBarry Smith static PetscErrorCode MatIsHermitian_SeqDense(Mat A,PetscReal rtol,PetscBool *fl) 3211cbb95d3SBarry Smith { 3221cbb95d3SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 323d0f46423SBarry Smith PetscInt i,j,m = A->rmap->n,N; 3241cbb95d3SBarry Smith PetscScalar *v = a->v; 3251cbb95d3SBarry Smith 3261cbb95d3SBarry Smith PetscFunctionBegin; 3271cbb95d3SBarry Smith *fl = PETSC_FALSE; 328d0f46423SBarry Smith if (A->rmap->n != A->cmap->n) PetscFunctionReturn(0); 3291cbb95d3SBarry Smith N = a->lda; 3301cbb95d3SBarry Smith 3311cbb95d3SBarry Smith for (i=0; i<m; i++) { 3321cbb95d3SBarry Smith for (j=i+1; j<m; j++) { 3331cbb95d3SBarry Smith if (PetscAbsScalar(v[i+j*N] - PetscConj(v[j+i*N])) > rtol) PetscFunctionReturn(0); 3341cbb95d3SBarry Smith } 3351cbb95d3SBarry Smith } 3361cbb95d3SBarry Smith *fl = PETSC_TRUE; 3371cbb95d3SBarry Smith PetscFunctionReturn(0); 3381cbb95d3SBarry Smith } 3391cbb95d3SBarry Smith 340e0877f53SBarry Smith static PetscErrorCode MatDuplicateNoCreate_SeqDense(Mat newi,Mat A,MatDuplicateOption cpvalues) 341b24902e0SBarry Smith { 342b24902e0SBarry Smith Mat_SeqDense *mat = (Mat_SeqDense*)A->data,*l; 343b24902e0SBarry Smith PetscErrorCode ierr; 344b24902e0SBarry Smith PetscInt lda = (PetscInt)mat->lda,j,m; 345b24902e0SBarry Smith 346b24902e0SBarry Smith PetscFunctionBegin; 347aa5ea44dSBarry Smith ierr = PetscLayoutReference(A->rmap,&newi->rmap);CHKERRQ(ierr); 348aa5ea44dSBarry Smith ierr = PetscLayoutReference(A->cmap,&newi->cmap);CHKERRQ(ierr); 3490298fd71SBarry Smith ierr = MatSeqDenseSetPreallocation(newi,NULL);CHKERRQ(ierr); 350b24902e0SBarry Smith if (cpvalues == MAT_COPY_VALUES) { 351b24902e0SBarry Smith l = (Mat_SeqDense*)newi->data; 352d0f46423SBarry Smith if (lda>A->rmap->n) { 353d0f46423SBarry Smith m = A->rmap->n; 354d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 355b24902e0SBarry Smith ierr = PetscMemcpy(l->v+j*m,mat->v+j*lda,m*sizeof(PetscScalar));CHKERRQ(ierr); 356b24902e0SBarry Smith } 357b24902e0SBarry Smith } else { 358d0f46423SBarry Smith ierr = PetscMemcpy(l->v,mat->v,A->rmap->n*A->cmap->n*sizeof(PetscScalar));CHKERRQ(ierr); 359b24902e0SBarry Smith } 360b24902e0SBarry Smith } 361b24902e0SBarry Smith newi->assembled = PETSC_TRUE; 362b24902e0SBarry Smith PetscFunctionReturn(0); 363b24902e0SBarry Smith } 364b24902e0SBarry Smith 365e0877f53SBarry Smith static PetscErrorCode MatDuplicate_SeqDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 36602cad45dSBarry Smith { 3676849ba73SBarry Smith PetscErrorCode ierr; 36802cad45dSBarry Smith 3693a40ed3dSBarry Smith PetscFunctionBegin; 370ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),newmat);CHKERRQ(ierr); 371d0f46423SBarry Smith ierr = MatSetSizes(*newmat,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n);CHKERRQ(ierr); 3725c9eb25fSBarry Smith ierr = MatSetType(*newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 373719d5645SBarry Smith ierr = MatDuplicateNoCreate_SeqDense(*newmat,A,cpvalues);CHKERRQ(ierr); 374b24902e0SBarry Smith PetscFunctionReturn(0); 375b24902e0SBarry Smith } 376b24902e0SBarry Smith 3776ee01492SSatish Balay 378e0877f53SBarry Smith static PetscErrorCode MatLUFactor_SeqDense(Mat,IS,IS,const MatFactorInfo*); 379719d5645SBarry Smith 380e0877f53SBarry Smith static PetscErrorCode MatLUFactorNumeric_SeqDense(Mat fact,Mat A,const MatFactorInfo *info_dummy) 381289bc588SBarry Smith { 3824482741eSBarry Smith MatFactorInfo info; 383a093e273SMatthew Knepley PetscErrorCode ierr; 3843a40ed3dSBarry Smith 3853a40ed3dSBarry Smith PetscFunctionBegin; 386c3ef05f6SHong Zhang ierr = MatDuplicateNoCreate_SeqDense(fact,A,MAT_COPY_VALUES);CHKERRQ(ierr); 387719d5645SBarry Smith ierr = MatLUFactor_SeqDense(fact,0,0,&info);CHKERRQ(ierr); 3883a40ed3dSBarry Smith PetscFunctionReturn(0); 389289bc588SBarry Smith } 3906ee01492SSatish Balay 391e0877f53SBarry Smith static PetscErrorCode MatSolve_SeqDense(Mat A,Vec xx,Vec yy) 392289bc588SBarry Smith { 393c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 3946849ba73SBarry Smith PetscErrorCode ierr; 395f1ceaac6SMatthew G. Knepley const PetscScalar *x; 396f1ceaac6SMatthew G. Knepley PetscScalar *y; 397c5df96a5SBarry Smith PetscBLASInt one = 1,info,m; 39867e560aaSBarry Smith 3993a40ed3dSBarry Smith PetscFunctionBegin; 400c5df96a5SBarry Smith ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr); 401f1ceaac6SMatthew G. Knepley ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 4021ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 403d0f46423SBarry Smith ierr = PetscMemcpy(y,x,A->rmap->n*sizeof(PetscScalar));CHKERRQ(ierr); 404d5f3da31SBarry Smith if (A->factortype == MAT_FACTOR_LU) { 405ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_GETRS) 406e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"GETRS - Lapack routine is unavailable."); 407ae7cfcebSSatish Balay #else 4088b83055fSJed Brown PetscStackCallBLAS("LAPACKgetrs",LAPACKgetrs_("N",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info)); 409e32f2f54SBarry Smith if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"GETRS - Bad solve"); 410ae7cfcebSSatish Balay #endif 411d5f3da31SBarry Smith } else if (A->factortype == MAT_FACTOR_CHOLESKY) { 412ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_POTRS) 413e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"POTRS - Lapack routine is unavailable."); 414ae7cfcebSSatish Balay #else 415a49dc2a2SStefano Zampini if (A->spd) { 4168b83055fSJed Brown PetscStackCallBLAS("LAPACKpotrs",LAPACKpotrs_("L",&m,&one,mat->v,&mat->lda,y,&m,&info)); 417e32f2f54SBarry Smith if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"POTRS Bad solve"); 418a49dc2a2SStefano Zampini #if defined (PETSC_USE_COMPLEX) 419a49dc2a2SStefano Zampini } else if (A->hermitian) { 420a49dc2a2SStefano Zampini PetscStackCallBLAS("LAPACKhetrs",LAPACKhetrs_("L",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info)); 421a49dc2a2SStefano Zampini if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"HETRS Bad solve"); 422a49dc2a2SStefano Zampini #endif 423a49dc2a2SStefano Zampini } else { /* symmetric case */ 424a49dc2a2SStefano Zampini PetscStackCallBLAS("LAPACKsytrs",LAPACKsytrs_("L",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info)); 425a49dc2a2SStefano Zampini if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"SYTRS Bad solve"); 426a49dc2a2SStefano Zampini } 427ae7cfcebSSatish Balay #endif 4282205254eSKarl Rupp } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Matrix must be factored to solve"); 429f1ceaac6SMatthew G. Knepley ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 4301ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 431dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*A->cmap->n*A->cmap->n - A->cmap->n);CHKERRQ(ierr); 4323a40ed3dSBarry Smith PetscFunctionReturn(0); 433289bc588SBarry Smith } 4346ee01492SSatish Balay 435e0877f53SBarry Smith static PetscErrorCode MatMatSolve_SeqDense(Mat A,Mat B,Mat X) 43685e2c93fSHong Zhang { 43785e2c93fSHong Zhang Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 43885e2c93fSHong Zhang PetscErrorCode ierr; 43985e2c93fSHong Zhang PetscScalar *b,*x; 440efb80c78SLisandro Dalcin PetscInt n; 441783b601eSJed Brown PetscBLASInt nrhs,info,m; 442bda8bf91SBarry Smith PetscBool flg; 44385e2c93fSHong Zhang 44485e2c93fSHong Zhang PetscFunctionBegin; 445c5df96a5SBarry Smith ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr); 4460298fd71SBarry Smith ierr = PetscObjectTypeCompareAny((PetscObject)B,&flg,MATSEQDENSE,MATMPIDENSE,NULL);CHKERRQ(ierr); 447ce94432eSBarry Smith if (!flg) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Matrix B must be MATDENSE matrix"); 4480298fd71SBarry Smith ierr = PetscObjectTypeCompareAny((PetscObject)X,&flg,MATSEQDENSE,MATMPIDENSE,NULL);CHKERRQ(ierr); 449ce94432eSBarry Smith if (!flg) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Matrix X must be MATDENSE matrix"); 450bda8bf91SBarry Smith 4510298fd71SBarry Smith ierr = MatGetSize(B,NULL,&n);CHKERRQ(ierr); 452c5df96a5SBarry Smith ierr = PetscBLASIntCast(n,&nrhs);CHKERRQ(ierr); 4538c778c55SBarry Smith ierr = MatDenseGetArray(B,&b);CHKERRQ(ierr); 4548c778c55SBarry Smith ierr = MatDenseGetArray(X,&x);CHKERRQ(ierr); 45585e2c93fSHong Zhang 456f272c775SHong Zhang ierr = PetscMemcpy(x,b,m*nrhs*sizeof(PetscScalar));CHKERRQ(ierr); 45785e2c93fSHong Zhang 45885e2c93fSHong Zhang if (A->factortype == MAT_FACTOR_LU) { 45985e2c93fSHong Zhang #if defined(PETSC_MISSING_LAPACK_GETRS) 46085e2c93fSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"GETRS - Lapack routine is unavailable."); 46185e2c93fSHong Zhang #else 4628b83055fSJed Brown PetscStackCallBLAS("LAPACKgetrs",LAPACKgetrs_("N",&m,&nrhs,mat->v,&mat->lda,mat->pivots,x,&m,&info)); 46385e2c93fSHong Zhang if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"GETRS - Bad solve"); 46485e2c93fSHong Zhang #endif 46585e2c93fSHong Zhang } else if (A->factortype == MAT_FACTOR_CHOLESKY) { 46685e2c93fSHong Zhang #if defined(PETSC_MISSING_LAPACK_POTRS) 46785e2c93fSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"POTRS - Lapack routine is unavailable."); 46885e2c93fSHong Zhang #else 469a49dc2a2SStefano Zampini if (A->spd) { 4708b83055fSJed Brown PetscStackCallBLAS("LAPACKpotrs",LAPACKpotrs_("L",&m,&nrhs,mat->v,&mat->lda,x,&m,&info)); 47185e2c93fSHong Zhang if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"POTRS Bad solve"); 472a49dc2a2SStefano Zampini #if defined (PETSC_USE_COMPLEX) 473a49dc2a2SStefano Zampini } else if (A->hermitian) { 474a49dc2a2SStefano Zampini PetscStackCallBLAS("LAPACKhetrs",LAPACKhetrs_("L",&m,&nrhs,mat->v,&mat->lda,mat->pivots,x,&m,&info)); 475a49dc2a2SStefano Zampini if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"HETRS Bad solve"); 476a49dc2a2SStefano Zampini #endif 477a49dc2a2SStefano Zampini } else { /* symmetric case */ 478a49dc2a2SStefano Zampini PetscStackCallBLAS("LAPACKsytrs",LAPACKsytrs_("L",&m,&nrhs,mat->v,&mat->lda,mat->pivots,x,&m,&info)); 479a49dc2a2SStefano Zampini if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"SYTRS Bad solve"); 480a49dc2a2SStefano Zampini } 48185e2c93fSHong Zhang #endif 4822205254eSKarl Rupp } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Matrix must be factored to solve"); 48385e2c93fSHong Zhang 4848c778c55SBarry Smith ierr = MatDenseRestoreArray(B,&b);CHKERRQ(ierr); 4858c778c55SBarry Smith ierr = MatDenseRestoreArray(X,&x);CHKERRQ(ierr); 48685e2c93fSHong Zhang ierr = PetscLogFlops(nrhs*(2.0*m*m - m));CHKERRQ(ierr); 48785e2c93fSHong Zhang PetscFunctionReturn(0); 48885e2c93fSHong Zhang } 48985e2c93fSHong Zhang 490e0877f53SBarry Smith static PetscErrorCode MatSolveTranspose_SeqDense(Mat A,Vec xx,Vec yy) 491da3a660dSBarry Smith { 492c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 493dfbe8321SBarry Smith PetscErrorCode ierr; 494f1ceaac6SMatthew G. Knepley const PetscScalar *x; 495f1ceaac6SMatthew G. Knepley PetscScalar *y; 496c5df96a5SBarry Smith PetscBLASInt one = 1,info,m; 49767e560aaSBarry Smith 4983a40ed3dSBarry Smith PetscFunctionBegin; 499c5df96a5SBarry Smith ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr); 500f1ceaac6SMatthew G. Knepley ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 5011ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 502d0f46423SBarry Smith ierr = PetscMemcpy(y,x,A->rmap->n*sizeof(PetscScalar));CHKERRQ(ierr); 5038208b9aeSStefano Zampini if (A->factortype == MAT_FACTOR_LU) { 504ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_GETRS) 505e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"GETRS - Lapack routine is unavailable."); 506ae7cfcebSSatish Balay #else 5078b83055fSJed Brown PetscStackCallBLAS("LAPACKgetrs",LAPACKgetrs_("T",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info)); 508e32f2f54SBarry Smith if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"POTRS - Bad solve"); 509ae7cfcebSSatish Balay #endif 5108208b9aeSStefano Zampini } else if (A->factortype == MAT_FACTOR_CHOLESKY) { 511ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_POTRS) 512e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"POTRS - Lapack routine is unavailable."); 513ae7cfcebSSatish Balay #else 514a49dc2a2SStefano Zampini if (A->spd) { 5158b83055fSJed Brown PetscStackCallBLAS("LAPACKpotrs",LAPACKpotrs_("L",&m,&one,mat->v,&mat->lda,y,&m,&info)); 516a49dc2a2SStefano Zampini if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"POTRS Bad solve"); 517a49dc2a2SStefano Zampini #if defined (PETSC_USE_COMPLEX) 518a49dc2a2SStefano Zampini } else if (A->hermitian) { 519a49dc2a2SStefano Zampini SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatSolveTranspose with Cholesky/Hermitian not available"); 520ae7cfcebSSatish Balay #endif 521a49dc2a2SStefano Zampini } else { /* symmetric case */ 522a49dc2a2SStefano Zampini PetscStackCallBLAS("LAPACKsytrs",LAPACKsytrs_("L",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info)); 523a49dc2a2SStefano Zampini if (info) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"SYTRS Bad solve"); 524da3a660dSBarry Smith } 525a49dc2a2SStefano Zampini #endif 526a49dc2a2SStefano Zampini } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Matrix must be factored to solve"); 527f1ceaac6SMatthew G. Knepley ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 5281ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 529dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*A->cmap->n*A->cmap->n - A->cmap->n);CHKERRQ(ierr); 5303a40ed3dSBarry Smith PetscFunctionReturn(0); 531da3a660dSBarry Smith } 5326ee01492SSatish Balay 533e0877f53SBarry Smith static PetscErrorCode MatSolveAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy) 534da3a660dSBarry Smith { 535dfbe8321SBarry Smith PetscErrorCode ierr; 536f1ceaac6SMatthew G. Knepley const PetscScalar *x; 537f1ceaac6SMatthew G. Knepley PetscScalar *y,sone = 1.0; 538da3a660dSBarry Smith Vec tmp = 0; 53967e560aaSBarry Smith 5403a40ed3dSBarry Smith PetscFunctionBegin; 541f1ceaac6SMatthew G. Knepley ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 5421ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 543d0f46423SBarry Smith if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 544da3a660dSBarry Smith if (yy == zz) { 54578b31e54SBarry Smith ierr = VecDuplicate(yy,&tmp);CHKERRQ(ierr); 5463bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)tmp);CHKERRQ(ierr); 54778b31e54SBarry Smith ierr = VecCopy(yy,tmp);CHKERRQ(ierr); 548da3a660dSBarry Smith } 5498208b9aeSStefano Zampini ierr = MatSolve_SeqDense(A,xx,yy);CHKERRQ(ierr); 5506bf464f9SBarry Smith if (tmp) { 5516bf464f9SBarry Smith ierr = VecAXPY(yy,sone,tmp);CHKERRQ(ierr); 5526bf464f9SBarry Smith ierr = VecDestroy(&tmp);CHKERRQ(ierr); 5536bf464f9SBarry Smith } else { 5546bf464f9SBarry Smith ierr = VecAXPY(yy,sone,zz);CHKERRQ(ierr); 5556bf464f9SBarry Smith } 556f1ceaac6SMatthew G. Knepley ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 5571ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 5588208b9aeSStefano Zampini ierr = PetscLogFlops(A->cmap->n);CHKERRQ(ierr); 5593a40ed3dSBarry Smith PetscFunctionReturn(0); 560da3a660dSBarry Smith } 56167e560aaSBarry Smith 562e0877f53SBarry Smith static PetscErrorCode MatSolveTransposeAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy) 563da3a660dSBarry Smith { 5646849ba73SBarry Smith PetscErrorCode ierr; 565f1ceaac6SMatthew G. Knepley const PetscScalar *x; 566f1ceaac6SMatthew G. Knepley PetscScalar *y,sone = 1.0; 56789ae1891SBarry Smith Vec tmp = NULL; 56867e560aaSBarry Smith 5693a40ed3dSBarry Smith PetscFunctionBegin; 570d0f46423SBarry Smith if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 571f1ceaac6SMatthew G. Knepley ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 5721ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 573da3a660dSBarry Smith if (yy == zz) { 57478b31e54SBarry Smith ierr = VecDuplicate(yy,&tmp);CHKERRQ(ierr); 5753bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)tmp);CHKERRQ(ierr); 57678b31e54SBarry Smith ierr = VecCopy(yy,tmp);CHKERRQ(ierr); 577da3a660dSBarry Smith } 5788208b9aeSStefano Zampini ierr = MatSolveTranspose_SeqDense(A,xx,yy);CHKERRQ(ierr); 57990f02eecSBarry Smith if (tmp) { 5802dcb1b2aSMatthew Knepley ierr = VecAXPY(yy,sone,tmp);CHKERRQ(ierr); 5816bf464f9SBarry Smith ierr = VecDestroy(&tmp);CHKERRQ(ierr); 5823a40ed3dSBarry Smith } else { 5832dcb1b2aSMatthew Knepley ierr = VecAXPY(yy,sone,zz);CHKERRQ(ierr); 58490f02eecSBarry Smith } 585f1ceaac6SMatthew G. Knepley ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 5861ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 5878208b9aeSStefano Zampini ierr = PetscLogFlops(A->cmap->n);CHKERRQ(ierr); 5883a40ed3dSBarry Smith PetscFunctionReturn(0); 589da3a660dSBarry Smith } 590db4efbfdSBarry Smith 591db4efbfdSBarry Smith /* ---------------------------------------------------------------*/ 592db4efbfdSBarry Smith /* COMMENT: I have chosen to hide row permutation in the pivots, 593db4efbfdSBarry Smith rather than put it in the Mat->row slot.*/ 594e0877f53SBarry Smith static PetscErrorCode MatLUFactor_SeqDense(Mat A,IS row,IS col,const MatFactorInfo *minfo) 595db4efbfdSBarry Smith { 596db4efbfdSBarry Smith #if defined(PETSC_MISSING_LAPACK_GETRF) 597db4efbfdSBarry Smith PetscFunctionBegin; 598e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"GETRF - Lapack routine is unavailable."); 599db4efbfdSBarry Smith #else 600db4efbfdSBarry Smith Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 601db4efbfdSBarry Smith PetscErrorCode ierr; 602db4efbfdSBarry Smith PetscBLASInt n,m,info; 603db4efbfdSBarry Smith 604db4efbfdSBarry Smith PetscFunctionBegin; 605c5df96a5SBarry Smith ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr); 606c5df96a5SBarry Smith ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr); 607db4efbfdSBarry Smith if (!mat->pivots) { 6088208b9aeSStefano Zampini ierr = PetscMalloc1(A->rmap->n,&mat->pivots);CHKERRQ(ierr); 6093bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)A,A->rmap->n*sizeof(PetscBLASInt));CHKERRQ(ierr); 610db4efbfdSBarry Smith } 611db4efbfdSBarry Smith if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 6128e57ea43SSatish Balay ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 6138b83055fSJed Brown PetscStackCallBLAS("LAPACKgetrf",LAPACKgetrf_(&m,&n,mat->v,&mat->lda,mat->pivots,&info)); 6148e57ea43SSatish Balay ierr = PetscFPTrapPop();CHKERRQ(ierr); 6158e57ea43SSatish Balay 616e32f2f54SBarry Smith if (info<0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"Bad argument to LU factorization"); 617e32f2f54SBarry Smith if (info>0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MAT_LU_ZRPVT,"Bad LU factorization"); 6188208b9aeSStefano Zampini 619db4efbfdSBarry Smith A->ops->solve = MatSolve_SeqDense; 6208208b9aeSStefano Zampini A->ops->matsolve = MatMatSolve_SeqDense; 621db4efbfdSBarry Smith A->ops->solvetranspose = MatSolveTranspose_SeqDense; 622db4efbfdSBarry Smith A->ops->solveadd = MatSolveAdd_SeqDense; 623db4efbfdSBarry Smith A->ops->solvetransposeadd = MatSolveTransposeAdd_SeqDense; 624d5f3da31SBarry Smith A->factortype = MAT_FACTOR_LU; 625db4efbfdSBarry Smith 626f6224b95SHong Zhang ierr = PetscFree(A->solvertype);CHKERRQ(ierr); 627f6224b95SHong Zhang ierr = PetscStrallocpy(MATSOLVERPETSC,&A->solvertype);CHKERRQ(ierr); 628f6224b95SHong Zhang 629dc0b31edSSatish Balay ierr = PetscLogFlops((2.0*A->cmap->n*A->cmap->n*A->cmap->n)/3);CHKERRQ(ierr); 630db4efbfdSBarry Smith #endif 631db4efbfdSBarry Smith PetscFunctionReturn(0); 632db4efbfdSBarry Smith } 633db4efbfdSBarry Smith 634a49dc2a2SStefano Zampini /* Cholesky as L*L^T or L*D*L^T and the symmetric/hermitian complex variants */ 635e0877f53SBarry Smith static PetscErrorCode MatCholeskyFactor_SeqDense(Mat A,IS perm,const MatFactorInfo *factinfo) 636db4efbfdSBarry Smith { 637db4efbfdSBarry Smith #if defined(PETSC_MISSING_LAPACK_POTRF) 638db4efbfdSBarry Smith PetscFunctionBegin; 639e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"POTRF - Lapack routine is unavailable."); 640db4efbfdSBarry Smith #else 641db4efbfdSBarry Smith Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 642db4efbfdSBarry Smith PetscErrorCode ierr; 643c5df96a5SBarry Smith PetscBLASInt info,n; 644db4efbfdSBarry Smith 645db4efbfdSBarry Smith PetscFunctionBegin; 646c5df96a5SBarry Smith ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr); 647db4efbfdSBarry Smith if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 648a49dc2a2SStefano Zampini if (A->spd) { 6498b83055fSJed Brown PetscStackCallBLAS("LAPACKpotrf",LAPACKpotrf_("L",&n,mat->v,&mat->lda,&info)); 650a49dc2a2SStefano Zampini #if defined (PETSC_USE_COMPLEX) 651a49dc2a2SStefano Zampini } else if (A->hermitian) { 652a49dc2a2SStefano Zampini if (!mat->pivots) { 653a49dc2a2SStefano Zampini ierr = PetscMalloc1(A->rmap->n,&mat->pivots);CHKERRQ(ierr); 654a49dc2a2SStefano Zampini ierr = PetscLogObjectMemory((PetscObject)A,A->rmap->n*sizeof(PetscBLASInt));CHKERRQ(ierr); 655a49dc2a2SStefano Zampini } 656a49dc2a2SStefano Zampini if (!mat->fwork) { 657a49dc2a2SStefano Zampini PetscScalar dummy; 658a49dc2a2SStefano Zampini 659a49dc2a2SStefano Zampini mat->lfwork = -1; 660a49dc2a2SStefano Zampini PetscStackCallBLAS("LAPACKhetrf",LAPACKhetrf_("L",&n,mat->v,&mat->lda,mat->pivots,&dummy,&mat->lfwork,&info)); 661a49dc2a2SStefano Zampini mat->lfwork = (PetscInt)PetscRealPart(dummy); 662a49dc2a2SStefano Zampini ierr = PetscMalloc1(mat->lfwork,&mat->fwork);CHKERRQ(ierr); 663a49dc2a2SStefano Zampini ierr = PetscLogObjectMemory((PetscObject)A,mat->lfwork*sizeof(PetscBLASInt));CHKERRQ(ierr); 664a49dc2a2SStefano Zampini } 665a49dc2a2SStefano Zampini PetscStackCallBLAS("LAPACKhetrf",LAPACKhetrf_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&mat->lfwork,&info)); 666a49dc2a2SStefano Zampini #endif 667a49dc2a2SStefano Zampini } else { /* symmetric case */ 668a49dc2a2SStefano Zampini if (!mat->pivots) { 669a49dc2a2SStefano Zampini ierr = PetscMalloc1(A->rmap->n,&mat->pivots);CHKERRQ(ierr); 670a49dc2a2SStefano Zampini ierr = PetscLogObjectMemory((PetscObject)A,A->rmap->n*sizeof(PetscBLASInt));CHKERRQ(ierr); 671a49dc2a2SStefano Zampini } 672a49dc2a2SStefano Zampini if (!mat->fwork) { 673a49dc2a2SStefano Zampini PetscScalar dummy; 674a49dc2a2SStefano Zampini 675a49dc2a2SStefano Zampini mat->lfwork = -1; 676a49dc2a2SStefano Zampini PetscStackCallBLAS("LAPACKsytrf",LAPACKsytrf_("L",&n,mat->v,&mat->lda,mat->pivots,&dummy,&mat->lfwork,&info)); 677a49dc2a2SStefano Zampini mat->lfwork = (PetscInt)PetscRealPart(dummy); 678a49dc2a2SStefano Zampini ierr = PetscMalloc1(mat->lfwork,&mat->fwork);CHKERRQ(ierr); 679a49dc2a2SStefano Zampini ierr = PetscLogObjectMemory((PetscObject)A,mat->lfwork*sizeof(PetscBLASInt));CHKERRQ(ierr); 680a49dc2a2SStefano Zampini } 681a49dc2a2SStefano Zampini PetscStackCallBLAS("LAPACKsytrf",LAPACKsytrf_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&mat->lfwork,&info)); 682a49dc2a2SStefano Zampini } 683e32f2f54SBarry Smith if (info) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_MAT_CH_ZRPVT,"Bad factorization: zero pivot in row %D",(PetscInt)info-1); 6848208b9aeSStefano Zampini 685db4efbfdSBarry Smith A->ops->solve = MatSolve_SeqDense; 6868208b9aeSStefano Zampini A->ops->matsolve = MatMatSolve_SeqDense; 687db4efbfdSBarry Smith A->ops->solvetranspose = MatSolveTranspose_SeqDense; 688db4efbfdSBarry Smith A->ops->solveadd = MatSolveAdd_SeqDense; 689db4efbfdSBarry Smith A->ops->solvetransposeadd = MatSolveTransposeAdd_SeqDense; 690d5f3da31SBarry Smith A->factortype = MAT_FACTOR_CHOLESKY; 6912205254eSKarl Rupp 692f6224b95SHong Zhang ierr = PetscFree(A->solvertype);CHKERRQ(ierr); 693f6224b95SHong Zhang ierr = PetscStrallocpy(MATSOLVERPETSC,&A->solvertype);CHKERRQ(ierr); 694f6224b95SHong Zhang 695eb3f19e4SBarry Smith ierr = PetscLogFlops((1.0*A->cmap->n*A->cmap->n*A->cmap->n)/3.0);CHKERRQ(ierr); 696db4efbfdSBarry Smith #endif 697db4efbfdSBarry Smith PetscFunctionReturn(0); 698db4efbfdSBarry Smith } 699db4efbfdSBarry Smith 700db4efbfdSBarry Smith 7010481f469SBarry Smith PetscErrorCode MatCholeskyFactorNumeric_SeqDense(Mat fact,Mat A,const MatFactorInfo *info_dummy) 702db4efbfdSBarry Smith { 703db4efbfdSBarry Smith PetscErrorCode ierr; 704db4efbfdSBarry Smith MatFactorInfo info; 705db4efbfdSBarry Smith 706db4efbfdSBarry Smith PetscFunctionBegin; 707db4efbfdSBarry Smith info.fill = 1.0; 7082205254eSKarl Rupp 709c3ef05f6SHong Zhang ierr = MatDuplicateNoCreate_SeqDense(fact,A,MAT_COPY_VALUES);CHKERRQ(ierr); 710719d5645SBarry Smith ierr = MatCholeskyFactor_SeqDense(fact,0,&info);CHKERRQ(ierr); 711db4efbfdSBarry Smith PetscFunctionReturn(0); 712db4efbfdSBarry Smith } 713db4efbfdSBarry Smith 714e0877f53SBarry Smith static PetscErrorCode MatCholeskyFactorSymbolic_SeqDense(Mat fact,Mat A,IS row,const MatFactorInfo *info) 715db4efbfdSBarry Smith { 716db4efbfdSBarry Smith PetscFunctionBegin; 717c3ef05f6SHong Zhang fact->assembled = PETSC_TRUE; 7181bbcc794SSatish Balay fact->preallocated = PETSC_TRUE; 719719d5645SBarry Smith fact->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqDense; 720bd443b22SStefano Zampini fact->ops->solve = MatSolve_SeqDense; 721bd443b22SStefano Zampini fact->ops->matsolve = MatMatSolve_SeqDense; 722bd443b22SStefano Zampini fact->ops->solvetranspose = MatSolveTranspose_SeqDense; 723bd443b22SStefano Zampini fact->ops->solveadd = MatSolveAdd_SeqDense; 724bd443b22SStefano Zampini fact->ops->solvetransposeadd = MatSolveTransposeAdd_SeqDense; 725db4efbfdSBarry Smith PetscFunctionReturn(0); 726db4efbfdSBarry Smith } 727db4efbfdSBarry Smith 728e0877f53SBarry Smith static PetscErrorCode MatLUFactorSymbolic_SeqDense(Mat fact,Mat A,IS row,IS col,const MatFactorInfo *info) 729db4efbfdSBarry Smith { 730db4efbfdSBarry Smith PetscFunctionBegin; 731b66fe19dSMatthew G Knepley fact->preallocated = PETSC_TRUE; 732c3ef05f6SHong Zhang fact->assembled = PETSC_TRUE; 733719d5645SBarry Smith fact->ops->lufactornumeric = MatLUFactorNumeric_SeqDense; 734bd443b22SStefano Zampini fact->ops->solve = MatSolve_SeqDense; 735bd443b22SStefano Zampini fact->ops->matsolve = MatMatSolve_SeqDense; 736bd443b22SStefano Zampini fact->ops->solvetranspose = MatSolveTranspose_SeqDense; 737bd443b22SStefano Zampini fact->ops->solveadd = MatSolveAdd_SeqDense; 738bd443b22SStefano Zampini fact->ops->solvetransposeadd = MatSolveTransposeAdd_SeqDense; 739db4efbfdSBarry Smith PetscFunctionReturn(0); 740db4efbfdSBarry Smith } 741db4efbfdSBarry Smith 742cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatGetFactor_seqdense_petsc(Mat A,MatFactorType ftype,Mat *fact) 743db4efbfdSBarry Smith { 744db4efbfdSBarry Smith PetscErrorCode ierr; 745db4efbfdSBarry Smith 746db4efbfdSBarry Smith PetscFunctionBegin; 747ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),fact);CHKERRQ(ierr); 748db4efbfdSBarry Smith ierr = MatSetSizes(*fact,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n);CHKERRQ(ierr); 749db4efbfdSBarry Smith ierr = MatSetType(*fact,((PetscObject)A)->type_name);CHKERRQ(ierr); 750db4efbfdSBarry Smith if (ftype == MAT_FACTOR_LU) { 751db4efbfdSBarry Smith (*fact)->ops->lufactorsymbolic = MatLUFactorSymbolic_SeqDense; 752db4efbfdSBarry Smith } else { 753db4efbfdSBarry Smith (*fact)->ops->choleskyfactorsymbolic = MatCholeskyFactorSymbolic_SeqDense; 754db4efbfdSBarry Smith } 755d5f3da31SBarry Smith (*fact)->factortype = ftype; 75600c67f3bSHong Zhang 75700c67f3bSHong Zhang ierr = PetscFree((*fact)->solvertype);CHKERRQ(ierr); 75800c67f3bSHong Zhang ierr = PetscStrallocpy(MATSOLVERPETSC,&(*fact)->solvertype);CHKERRQ(ierr); 759db4efbfdSBarry Smith PetscFunctionReturn(0); 760db4efbfdSBarry Smith } 761db4efbfdSBarry Smith 762289bc588SBarry Smith /* ------------------------------------------------------------------*/ 763e0877f53SBarry Smith static PetscErrorCode MatSOR_SeqDense(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal shift,PetscInt its,PetscInt lits,Vec xx) 764289bc588SBarry Smith { 765c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 766d9ca1df4SBarry Smith PetscScalar *x,*v = mat->v,zero = 0.0,xt; 767d9ca1df4SBarry Smith const PetscScalar *b; 768dfbe8321SBarry Smith PetscErrorCode ierr; 769d0f46423SBarry Smith PetscInt m = A->rmap->n,i; 770c5df96a5SBarry Smith PetscBLASInt o = 1,bm; 771289bc588SBarry Smith 7723a40ed3dSBarry Smith PetscFunctionBegin; 773422a814eSBarry Smith if (shift == -1) shift = 0.0; /* negative shift indicates do not error on zero diagonal; this code never zeros on zero diagonal */ 774c5df96a5SBarry Smith ierr = PetscBLASIntCast(m,&bm);CHKERRQ(ierr); 775289bc588SBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 77671044d3cSBarry Smith /* this is a hack fix, should have another version without the second BLASdot */ 7772dcb1b2aSMatthew Knepley ierr = VecSet(xx,zero);CHKERRQ(ierr); 778289bc588SBarry Smith } 7791ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 780d9ca1df4SBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 781b965ef7fSBarry Smith its = its*lits; 782e32f2f54SBarry Smith if (its <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 783289bc588SBarry Smith while (its--) { 784fccaa45eSBarry Smith if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) { 785289bc588SBarry Smith for (i=0; i<m; i++) { 7868b83055fSJed Brown PetscStackCallBLAS("BLASdot",xt = b[i] - BLASdot_(&bm,v+i,&bm,x,&o)); 78755a1b374SBarry Smith x[i] = (1. - omega)*x[i] + omega*(xt+v[i + i*m]*x[i])/(v[i + i*m]+shift); 788289bc588SBarry Smith } 789289bc588SBarry Smith } 790fccaa45eSBarry Smith if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 791289bc588SBarry Smith for (i=m-1; i>=0; i--) { 7928b83055fSJed Brown PetscStackCallBLAS("BLASdot",xt = b[i] - BLASdot_(&bm,v+i,&bm,x,&o)); 79355a1b374SBarry Smith x[i] = (1. - omega)*x[i] + omega*(xt+v[i + i*m]*x[i])/(v[i + i*m]+shift); 794289bc588SBarry Smith } 795289bc588SBarry Smith } 796289bc588SBarry Smith } 797d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 7981ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 7993a40ed3dSBarry Smith PetscFunctionReturn(0); 800289bc588SBarry Smith } 801289bc588SBarry Smith 802289bc588SBarry Smith /* -----------------------------------------------------------------*/ 803cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat A,Vec xx,Vec yy) 804289bc588SBarry Smith { 805c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 806d9ca1df4SBarry Smith const PetscScalar *v = mat->v,*x; 807d9ca1df4SBarry Smith PetscScalar *y; 808dfbe8321SBarry Smith PetscErrorCode ierr; 8090805154bSBarry Smith PetscBLASInt m, n,_One=1; 810ea709b57SSatish Balay PetscScalar _DOne=1.0,_DZero=0.0; 8113a40ed3dSBarry Smith 8123a40ed3dSBarry Smith PetscFunctionBegin; 813c5df96a5SBarry Smith ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr); 814c5df96a5SBarry Smith ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr); 815d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 8161ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 817*5ac36cfcSBarry Smith if (!A->rmap->n || !A->cmap->n) { 818*5ac36cfcSBarry Smith PetscBLASInt i; 819*5ac36cfcSBarry Smith for (i=0; i<n; i++) y[i] = 0.0; 820*5ac36cfcSBarry Smith } else { 8218b83055fSJed Brown PetscStackCallBLAS("BLASgemv",BLASgemv_("T",&m,&n,&_DOne,v,&mat->lda,x,&_One,&_DZero,y,&_One)); 822*5ac36cfcSBarry Smith ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n - A->cmap->n);CHKERRQ(ierr); 823*5ac36cfcSBarry Smith } 824d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 8251ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 8263a40ed3dSBarry Smith PetscFunctionReturn(0); 827289bc588SBarry Smith } 828800995b7SMatthew Knepley 829cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat A,Vec xx,Vec yy) 830289bc588SBarry Smith { 831c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 832d9ca1df4SBarry Smith PetscScalar *y,_DOne=1.0,_DZero=0.0; 833dfbe8321SBarry Smith PetscErrorCode ierr; 8340805154bSBarry Smith PetscBLASInt m, n, _One=1; 835d9ca1df4SBarry Smith const PetscScalar *v = mat->v,*x; 8363a40ed3dSBarry Smith 8373a40ed3dSBarry Smith PetscFunctionBegin; 838c5df96a5SBarry Smith ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr); 839c5df96a5SBarry Smith ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr); 840d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 8411ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 842*5ac36cfcSBarry Smith if (!A->rmap->n || !A->cmap->n) { 843*5ac36cfcSBarry Smith PetscBLASInt i; 844*5ac36cfcSBarry Smith for (i=0; i<m; i++) y[i] = 0.0; 845*5ac36cfcSBarry Smith } else { 8468b83055fSJed Brown PetscStackCallBLAS("BLASgemv",BLASgemv_("N",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DZero,y,&_One)); 847*5ac36cfcSBarry Smith ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n - A->rmap->n);CHKERRQ(ierr); 848*5ac36cfcSBarry Smith } 849d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 8501ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 8513a40ed3dSBarry Smith PetscFunctionReturn(0); 852289bc588SBarry Smith } 8536ee01492SSatish Balay 854cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy) 855289bc588SBarry Smith { 856c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 857d9ca1df4SBarry Smith const PetscScalar *v = mat->v,*x; 858d9ca1df4SBarry Smith PetscScalar *y,_DOne=1.0; 859dfbe8321SBarry Smith PetscErrorCode ierr; 8600805154bSBarry Smith PetscBLASInt m, n, _One=1; 8613a40ed3dSBarry Smith 8623a40ed3dSBarry Smith PetscFunctionBegin; 863c5df96a5SBarry Smith ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr); 864c5df96a5SBarry Smith ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr); 865d0f46423SBarry Smith if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 866600d6d0bSBarry Smith if (zz != yy) {ierr = VecCopy(zz,yy);CHKERRQ(ierr);} 867d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 8681ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 8698b83055fSJed Brown PetscStackCallBLAS("BLASgemv",BLASgemv_("N",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DOne,y,&_One)); 870d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 8711ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 872dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n);CHKERRQ(ierr); 8733a40ed3dSBarry Smith PetscFunctionReturn(0); 874289bc588SBarry Smith } 8756ee01492SSatish Balay 876e0877f53SBarry Smith static PetscErrorCode MatMultTransposeAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy) 877289bc588SBarry Smith { 878c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 879d9ca1df4SBarry Smith const PetscScalar *v = mat->v,*x; 880d9ca1df4SBarry Smith PetscScalar *y; 881dfbe8321SBarry Smith PetscErrorCode ierr; 8820805154bSBarry Smith PetscBLASInt m, n, _One=1; 88387828ca2SBarry Smith PetscScalar _DOne=1.0; 8843a40ed3dSBarry Smith 8853a40ed3dSBarry Smith PetscFunctionBegin; 886c5df96a5SBarry Smith ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr); 887c5df96a5SBarry Smith ierr = PetscBLASIntCast(A->cmap->n,&n);CHKERRQ(ierr); 888d0f46423SBarry Smith if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 889600d6d0bSBarry Smith if (zz != yy) {ierr = VecCopy(zz,yy);CHKERRQ(ierr);} 890d9ca1df4SBarry Smith ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr); 8911ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 8928b83055fSJed Brown PetscStackCallBLAS("BLASgemv",BLASgemv_("T",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DOne,y,&_One)); 893d9ca1df4SBarry Smith ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr); 8941ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 895dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n);CHKERRQ(ierr); 8963a40ed3dSBarry Smith PetscFunctionReturn(0); 897289bc588SBarry Smith } 898289bc588SBarry Smith 899289bc588SBarry Smith /* -----------------------------------------------------------------*/ 900e0877f53SBarry Smith static PetscErrorCode MatGetRow_SeqDense(Mat A,PetscInt row,PetscInt *ncols,PetscInt **cols,PetscScalar **vals) 901289bc588SBarry Smith { 902c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 90387828ca2SBarry Smith PetscScalar *v; 9046849ba73SBarry Smith PetscErrorCode ierr; 90513f74950SBarry Smith PetscInt i; 90667e560aaSBarry Smith 9073a40ed3dSBarry Smith PetscFunctionBegin; 908d0f46423SBarry Smith *ncols = A->cmap->n; 909289bc588SBarry Smith if (cols) { 910854ce69bSBarry Smith ierr = PetscMalloc1(A->cmap->n+1,cols);CHKERRQ(ierr); 911d0f46423SBarry Smith for (i=0; i<A->cmap->n; i++) (*cols)[i] = i; 912289bc588SBarry Smith } 913289bc588SBarry Smith if (vals) { 914854ce69bSBarry Smith ierr = PetscMalloc1(A->cmap->n+1,vals);CHKERRQ(ierr); 915289bc588SBarry Smith v = mat->v + row; 916d0f46423SBarry Smith for (i=0; i<A->cmap->n; i++) {(*vals)[i] = *v; v += mat->lda;} 917289bc588SBarry Smith } 9183a40ed3dSBarry Smith PetscFunctionReturn(0); 919289bc588SBarry Smith } 9206ee01492SSatish Balay 921e0877f53SBarry Smith static PetscErrorCode MatRestoreRow_SeqDense(Mat A,PetscInt row,PetscInt *ncols,PetscInt **cols,PetscScalar **vals) 922289bc588SBarry Smith { 923dfbe8321SBarry Smith PetscErrorCode ierr; 9246e111a19SKarl Rupp 925606d414cSSatish Balay PetscFunctionBegin; 926606d414cSSatish Balay if (cols) {ierr = PetscFree(*cols);CHKERRQ(ierr);} 927606d414cSSatish Balay if (vals) {ierr = PetscFree(*vals);CHKERRQ(ierr); } 9283a40ed3dSBarry Smith PetscFunctionReturn(0); 929289bc588SBarry Smith } 930289bc588SBarry Smith /* ----------------------------------------------------------------*/ 931e0877f53SBarry Smith static PetscErrorCode MatSetValues_SeqDense(Mat A,PetscInt m,const PetscInt indexm[],PetscInt n,const PetscInt indexn[],const PetscScalar v[],InsertMode addv) 932289bc588SBarry Smith { 933c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 93413f74950SBarry Smith PetscInt i,j,idx=0; 935d6dfbf8fSBarry Smith 9363a40ed3dSBarry Smith PetscFunctionBegin; 937289bc588SBarry Smith if (!mat->roworiented) { 938dbb450caSBarry Smith if (addv == INSERT_VALUES) { 939289bc588SBarry Smith for (j=0; j<n; j++) { 940cddbea37SSatish Balay if (indexn[j] < 0) {idx += m; continue;} 9412515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 942e32f2f54SBarry Smith if (indexn[j] >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1); 94358804f6dSBarry Smith #endif 944289bc588SBarry Smith for (i=0; i<m; i++) { 945cddbea37SSatish Balay if (indexm[i] < 0) {idx++; continue;} 9462515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 947e32f2f54SBarry Smith if (indexm[i] >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1); 94858804f6dSBarry Smith #endif 949cddbea37SSatish Balay mat->v[indexn[j]*mat->lda + indexm[i]] = v[idx++]; 950289bc588SBarry Smith } 951289bc588SBarry Smith } 9523a40ed3dSBarry Smith } else { 953289bc588SBarry Smith for (j=0; j<n; j++) { 954cddbea37SSatish Balay if (indexn[j] < 0) {idx += m; continue;} 9552515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 956e32f2f54SBarry Smith if (indexn[j] >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1); 95758804f6dSBarry Smith #endif 958289bc588SBarry Smith for (i=0; i<m; i++) { 959cddbea37SSatish Balay if (indexm[i] < 0) {idx++; continue;} 9602515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 961e32f2f54SBarry Smith if (indexm[i] >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1); 96258804f6dSBarry Smith #endif 963cddbea37SSatish Balay mat->v[indexn[j]*mat->lda + indexm[i]] += v[idx++]; 964289bc588SBarry Smith } 965289bc588SBarry Smith } 966289bc588SBarry Smith } 9673a40ed3dSBarry Smith } else { 968dbb450caSBarry Smith if (addv == INSERT_VALUES) { 969e8d4e0b9SBarry Smith for (i=0; i<m; i++) { 970cddbea37SSatish Balay if (indexm[i] < 0) { idx += n; continue;} 9712515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 972e32f2f54SBarry Smith if (indexm[i] >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1); 97358804f6dSBarry Smith #endif 974e8d4e0b9SBarry Smith for (j=0; j<n; j++) { 975cddbea37SSatish Balay if (indexn[j] < 0) { idx++; continue;} 9762515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 977e32f2f54SBarry Smith if (indexn[j] >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1); 97858804f6dSBarry Smith #endif 979cddbea37SSatish Balay mat->v[indexn[j]*mat->lda + indexm[i]] = v[idx++]; 980e8d4e0b9SBarry Smith } 981e8d4e0b9SBarry Smith } 9823a40ed3dSBarry Smith } else { 983289bc588SBarry Smith for (i=0; i<m; i++) { 984cddbea37SSatish Balay if (indexm[i] < 0) { idx += n; continue;} 9852515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 986e32f2f54SBarry Smith if (indexm[i] >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1); 98758804f6dSBarry Smith #endif 988289bc588SBarry Smith for (j=0; j<n; j++) { 989cddbea37SSatish Balay if (indexn[j] < 0) { idx++; continue;} 9902515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 991e32f2f54SBarry Smith if (indexn[j] >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1); 99258804f6dSBarry Smith #endif 993cddbea37SSatish Balay mat->v[indexn[j]*mat->lda + indexm[i]] += v[idx++]; 994289bc588SBarry Smith } 995289bc588SBarry Smith } 996289bc588SBarry Smith } 997e8d4e0b9SBarry Smith } 9983a40ed3dSBarry Smith PetscFunctionReturn(0); 999289bc588SBarry Smith } 1000e8d4e0b9SBarry Smith 1001e0877f53SBarry Smith static PetscErrorCode MatGetValues_SeqDense(Mat A,PetscInt m,const PetscInt indexm[],PetscInt n,const PetscInt indexn[],PetscScalar v[]) 1002ae80bb75SLois Curfman McInnes { 1003ae80bb75SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 100413f74950SBarry Smith PetscInt i,j; 1005ae80bb75SLois Curfman McInnes 10063a40ed3dSBarry Smith PetscFunctionBegin; 1007ae80bb75SLois Curfman McInnes /* row-oriented output */ 1008ae80bb75SLois Curfman McInnes for (i=0; i<m; i++) { 100997e567efSBarry Smith if (indexm[i] < 0) {v += n;continue;} 1010e32f2f54SBarry Smith if (indexm[i] >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D requested larger than number rows %D",indexm[i],A->rmap->n); 1011ae80bb75SLois Curfman McInnes for (j=0; j<n; j++) { 10126f31f424SBarry Smith if (indexn[j] < 0) {v++; continue;} 1013e32f2f54SBarry Smith if (indexn[j] >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column %D requested larger than number columns %D",indexn[j],A->cmap->n); 101497e567efSBarry Smith *v++ = mat->v[indexn[j]*mat->lda + indexm[i]]; 1015ae80bb75SLois Curfman McInnes } 1016ae80bb75SLois Curfman McInnes } 10173a40ed3dSBarry Smith PetscFunctionReturn(0); 1018ae80bb75SLois Curfman McInnes } 1019ae80bb75SLois Curfman McInnes 1020289bc588SBarry Smith /* -----------------------------------------------------------------*/ 1021289bc588SBarry Smith 1022e0877f53SBarry Smith static PetscErrorCode MatLoad_SeqDense(Mat newmat,PetscViewer viewer) 1023aabbc4fbSShri Abhyankar { 1024aabbc4fbSShri Abhyankar Mat_SeqDense *a; 1025aabbc4fbSShri Abhyankar PetscErrorCode ierr; 1026aabbc4fbSShri Abhyankar PetscInt *scols,i,j,nz,header[4]; 1027aabbc4fbSShri Abhyankar int fd; 1028aabbc4fbSShri Abhyankar PetscMPIInt size; 1029aabbc4fbSShri Abhyankar PetscInt *rowlengths = 0,M,N,*cols,grows,gcols; 1030aabbc4fbSShri Abhyankar PetscScalar *vals,*svals,*v,*w; 1031ce94432eSBarry Smith MPI_Comm comm; 1032aabbc4fbSShri Abhyankar 1033aabbc4fbSShri Abhyankar PetscFunctionBegin; 1034c98fd787SBarry Smith /* force binary viewer to load .info file if it has not yet done so */ 1035c98fd787SBarry Smith ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 1036ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 1037aabbc4fbSShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1038aabbc4fbSShri Abhyankar if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"view must have one processor"); 1039aabbc4fbSShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 1040aabbc4fbSShri Abhyankar ierr = PetscBinaryRead(fd,header,4,PETSC_INT);CHKERRQ(ierr); 1041aabbc4fbSShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Not matrix object"); 1042aabbc4fbSShri Abhyankar M = header[1]; N = header[2]; nz = header[3]; 1043aabbc4fbSShri Abhyankar 1044aabbc4fbSShri Abhyankar /* set global size if not set already*/ 1045aabbc4fbSShri Abhyankar if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) { 1046aabbc4fbSShri Abhyankar ierr = MatSetSizes(newmat,M,N,M,N);CHKERRQ(ierr); 1047aabbc4fbSShri Abhyankar } else { 1048aabbc4fbSShri Abhyankar /* if sizes and type are already set, check if the vector global sizes are correct */ 1049aabbc4fbSShri Abhyankar ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr); 1050aabbc4fbSShri Abhyankar if (M != grows || N != gcols) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different length (%d, %d) than the input matrix (%d, %d)",M,N,grows,gcols); 1051aabbc4fbSShri Abhyankar } 1052e6324fbbSBarry Smith a = (Mat_SeqDense*)newmat->data; 1053e6324fbbSBarry Smith if (!a->user_alloc) { 10540298fd71SBarry Smith ierr = MatSeqDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 1055e6324fbbSBarry Smith } 1056aabbc4fbSShri Abhyankar 1057aabbc4fbSShri Abhyankar if (nz == MATRIX_BINARY_FORMAT_DENSE) { /* matrix in file is dense */ 1058aabbc4fbSShri Abhyankar a = (Mat_SeqDense*)newmat->data; 1059aabbc4fbSShri Abhyankar v = a->v; 1060aabbc4fbSShri Abhyankar /* Allocate some temp space to read in the values and then flip them 1061aabbc4fbSShri Abhyankar from row major to column major */ 1062854ce69bSBarry Smith ierr = PetscMalloc1(M*N > 0 ? M*N : 1,&w);CHKERRQ(ierr); 1063aabbc4fbSShri Abhyankar /* read in nonzero values */ 1064aabbc4fbSShri Abhyankar ierr = PetscBinaryRead(fd,w,M*N,PETSC_SCALAR);CHKERRQ(ierr); 1065aabbc4fbSShri Abhyankar /* now flip the values and store them in the matrix*/ 1066aabbc4fbSShri Abhyankar for (j=0; j<N; j++) { 1067aabbc4fbSShri Abhyankar for (i=0; i<M; i++) { 1068aabbc4fbSShri Abhyankar *v++ =w[i*N+j]; 1069aabbc4fbSShri Abhyankar } 1070aabbc4fbSShri Abhyankar } 1071aabbc4fbSShri Abhyankar ierr = PetscFree(w);CHKERRQ(ierr); 1072aabbc4fbSShri Abhyankar } else { 1073aabbc4fbSShri Abhyankar /* read row lengths */ 1074854ce69bSBarry Smith ierr = PetscMalloc1(M+1,&rowlengths);CHKERRQ(ierr); 1075aabbc4fbSShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 1076aabbc4fbSShri Abhyankar 1077aabbc4fbSShri Abhyankar a = (Mat_SeqDense*)newmat->data; 1078aabbc4fbSShri Abhyankar v = a->v; 1079aabbc4fbSShri Abhyankar 1080aabbc4fbSShri Abhyankar /* read column indices and nonzeros */ 1081854ce69bSBarry Smith ierr = PetscMalloc1(nz+1,&scols);CHKERRQ(ierr); 1082aabbc4fbSShri Abhyankar cols = scols; 1083aabbc4fbSShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 1084854ce69bSBarry Smith ierr = PetscMalloc1(nz+1,&svals);CHKERRQ(ierr); 1085aabbc4fbSShri Abhyankar vals = svals; 1086aabbc4fbSShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 1087aabbc4fbSShri Abhyankar 1088aabbc4fbSShri Abhyankar /* insert into matrix */ 1089aabbc4fbSShri Abhyankar for (i=0; i<M; i++) { 1090aabbc4fbSShri Abhyankar for (j=0; j<rowlengths[i]; j++) v[i+M*scols[j]] = svals[j]; 1091aabbc4fbSShri Abhyankar svals += rowlengths[i]; scols += rowlengths[i]; 1092aabbc4fbSShri Abhyankar } 1093aabbc4fbSShri Abhyankar ierr = PetscFree(vals);CHKERRQ(ierr); 1094aabbc4fbSShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 1095aabbc4fbSShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 1096aabbc4fbSShri Abhyankar } 1097aabbc4fbSShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1098aabbc4fbSShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1099aabbc4fbSShri Abhyankar PetscFunctionReturn(0); 1100aabbc4fbSShri Abhyankar } 1101aabbc4fbSShri Abhyankar 11026849ba73SBarry Smith static PetscErrorCode MatView_SeqDense_ASCII(Mat A,PetscViewer viewer) 1103289bc588SBarry Smith { 1104932b0c3eSLois Curfman McInnes Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1105dfbe8321SBarry Smith PetscErrorCode ierr; 110613f74950SBarry Smith PetscInt i,j; 11072dcb1b2aSMatthew Knepley const char *name; 110887828ca2SBarry Smith PetscScalar *v; 1109f3ef73ceSBarry Smith PetscViewerFormat format; 11105f481a85SSatish Balay #if defined(PETSC_USE_COMPLEX) 1111ace3abfcSBarry Smith PetscBool allreal = PETSC_TRUE; 11125f481a85SSatish Balay #endif 1113932b0c3eSLois Curfman McInnes 11143a40ed3dSBarry Smith PetscFunctionBegin; 1115b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 1116456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 11173a40ed3dSBarry Smith PetscFunctionReturn(0); /* do nothing for now */ 1118fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_COMMON) { 1119d00279f6SBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 1120d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++) { 112144cd7ae7SLois Curfman McInnes v = a->v + i; 112277431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr); 1123d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 1124aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 1125329f5518SBarry Smith if (PetscRealPart(*v) != 0.0 && PetscImaginaryPart(*v) != 0.0) { 112657622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",j,(double)PetscRealPart(*v),(double)PetscImaginaryPart(*v));CHKERRQ(ierr); 1127329f5518SBarry Smith } else if (PetscRealPart(*v)) { 112857622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",j,(double)PetscRealPart(*v));CHKERRQ(ierr); 11296831982aSBarry Smith } 113080cd9d93SLois Curfman McInnes #else 11316831982aSBarry Smith if (*v) { 113257622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",j,(double)*v);CHKERRQ(ierr); 11336831982aSBarry Smith } 113480cd9d93SLois Curfman McInnes #endif 11351b807ce4Svictorle v += a->lda; 113680cd9d93SLois Curfman McInnes } 1137b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 113880cd9d93SLois Curfman McInnes } 1139d00279f6SBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 11403a40ed3dSBarry Smith } else { 1141d00279f6SBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 1142aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 114347989497SBarry Smith /* determine if matrix has all real values */ 114447989497SBarry Smith v = a->v; 1145d0f46423SBarry Smith for (i=0; i<A->rmap->n*A->cmap->n; i++) { 1146ffac6cdbSBarry Smith if (PetscImaginaryPart(v[i])) { allreal = PETSC_FALSE; break;} 114747989497SBarry Smith } 114847989497SBarry Smith #endif 1149fb9695e5SSatish Balay if (format == PETSC_VIEWER_ASCII_MATLAB) { 11503a7fca6bSBarry Smith ierr = PetscObjectGetName((PetscObject)A,&name);CHKERRQ(ierr); 1151d0f46423SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"%% Size = %D %D \n",A->rmap->n,A->cmap->n);CHKERRQ(ierr); 1152d0f46423SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"%s = zeros(%D,%D);\n",name,A->rmap->n,A->cmap->n);CHKERRQ(ierr); 1153fb9695e5SSatish Balay ierr = PetscViewerASCIIPrintf(viewer,"%s = [\n",name);CHKERRQ(ierr); 1154ffac6cdbSBarry Smith } 1155ffac6cdbSBarry Smith 1156d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++) { 1157932b0c3eSLois Curfman McInnes v = a->v + i; 1158d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 1159aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 116047989497SBarry Smith if (allreal) { 1161c61cd2faSJed Brown ierr = PetscViewerASCIIPrintf(viewer,"%18.16e ",(double)PetscRealPart(*v));CHKERRQ(ierr); 116247989497SBarry Smith } else { 1163c61cd2faSJed Brown ierr = PetscViewerASCIIPrintf(viewer,"%18.16e + %18.16ei ",(double)PetscRealPart(*v),(double)PetscImaginaryPart(*v));CHKERRQ(ierr); 116447989497SBarry Smith } 1165289bc588SBarry Smith #else 1166c61cd2faSJed Brown ierr = PetscViewerASCIIPrintf(viewer,"%18.16e ",(double)*v);CHKERRQ(ierr); 1167289bc588SBarry Smith #endif 11681b807ce4Svictorle v += a->lda; 1169289bc588SBarry Smith } 1170b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 1171289bc588SBarry Smith } 1172fb9695e5SSatish Balay if (format == PETSC_VIEWER_ASCII_MATLAB) { 1173b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"];\n");CHKERRQ(ierr); 1174ffac6cdbSBarry Smith } 1175d00279f6SBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 1176da3a660dSBarry Smith } 1177b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 11783a40ed3dSBarry Smith PetscFunctionReturn(0); 1179289bc588SBarry Smith } 1180289bc588SBarry Smith 11816849ba73SBarry Smith static PetscErrorCode MatView_SeqDense_Binary(Mat A,PetscViewer viewer) 1182932b0c3eSLois Curfman McInnes { 1183932b0c3eSLois Curfman McInnes Mat_SeqDense *a = (Mat_SeqDense*)A->data; 11846849ba73SBarry Smith PetscErrorCode ierr; 118513f74950SBarry Smith int fd; 1186d0f46423SBarry Smith PetscInt ict,j,n = A->cmap->n,m = A->rmap->n,i,*col_lens,nz = m*n; 1187f4403165SShri Abhyankar PetscScalar *v,*anonz,*vals; 1188f4403165SShri Abhyankar PetscViewerFormat format; 1189932b0c3eSLois Curfman McInnes 11903a40ed3dSBarry Smith PetscFunctionBegin; 1191b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 119290ace30eSBarry Smith 1193f4403165SShri Abhyankar ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 1194f4403165SShri Abhyankar if (format == PETSC_VIEWER_NATIVE) { 1195f4403165SShri Abhyankar /* store the matrix as a dense matrix */ 1196785e854fSJed Brown ierr = PetscMalloc1(4,&col_lens);CHKERRQ(ierr); 11972205254eSKarl Rupp 1198f4403165SShri Abhyankar col_lens[0] = MAT_FILE_CLASSID; 1199f4403165SShri Abhyankar col_lens[1] = m; 1200f4403165SShri Abhyankar col_lens[2] = n; 1201f4403165SShri Abhyankar col_lens[3] = MATRIX_BINARY_FORMAT_DENSE; 12022205254eSKarl Rupp 1203f4403165SShri Abhyankar ierr = PetscBinaryWrite(fd,col_lens,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1204f4403165SShri Abhyankar ierr = PetscFree(col_lens);CHKERRQ(ierr); 1205f4403165SShri Abhyankar 1206f4403165SShri Abhyankar /* write out matrix, by rows */ 1207854ce69bSBarry Smith ierr = PetscMalloc1(m*n+1,&vals);CHKERRQ(ierr); 1208f4403165SShri Abhyankar v = a->v; 1209f4403165SShri Abhyankar for (j=0; j<n; j++) { 1210f4403165SShri Abhyankar for (i=0; i<m; i++) { 1211f4403165SShri Abhyankar vals[j + i*n] = *v++; 1212f4403165SShri Abhyankar } 1213f4403165SShri Abhyankar } 1214f4403165SShri Abhyankar ierr = PetscBinaryWrite(fd,vals,n*m,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 1215f4403165SShri Abhyankar ierr = PetscFree(vals);CHKERRQ(ierr); 1216f4403165SShri Abhyankar } else { 1217854ce69bSBarry Smith ierr = PetscMalloc1(4+nz,&col_lens);CHKERRQ(ierr); 12182205254eSKarl Rupp 12190700a824SBarry Smith col_lens[0] = MAT_FILE_CLASSID; 1220932b0c3eSLois Curfman McInnes col_lens[1] = m; 1221932b0c3eSLois Curfman McInnes col_lens[2] = n; 1222932b0c3eSLois Curfman McInnes col_lens[3] = nz; 1223932b0c3eSLois Curfman McInnes 1224932b0c3eSLois Curfman McInnes /* store lengths of each row and write (including header) to file */ 1225932b0c3eSLois Curfman McInnes for (i=0; i<m; i++) col_lens[4+i] = n; 12266f69ff64SBarry Smith ierr = PetscBinaryWrite(fd,col_lens,4+m,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1227932b0c3eSLois Curfman McInnes 1228932b0c3eSLois Curfman McInnes /* Possibly should write in smaller increments, not whole matrix at once? */ 1229932b0c3eSLois Curfman McInnes /* store column indices (zero start index) */ 1230932b0c3eSLois Curfman McInnes ict = 0; 1231932b0c3eSLois Curfman McInnes for (i=0; i<m; i++) { 1232932b0c3eSLois Curfman McInnes for (j=0; j<n; j++) col_lens[ict++] = j; 1233932b0c3eSLois Curfman McInnes } 12346f69ff64SBarry Smith ierr = PetscBinaryWrite(fd,col_lens,nz,PETSC_INT,PETSC_FALSE);CHKERRQ(ierr); 1235606d414cSSatish Balay ierr = PetscFree(col_lens);CHKERRQ(ierr); 1236932b0c3eSLois Curfman McInnes 1237932b0c3eSLois Curfman McInnes /* store nonzero values */ 1238854ce69bSBarry Smith ierr = PetscMalloc1(nz+1,&anonz);CHKERRQ(ierr); 1239932b0c3eSLois Curfman McInnes ict = 0; 1240932b0c3eSLois Curfman McInnes for (i=0; i<m; i++) { 1241932b0c3eSLois Curfman McInnes v = a->v + i; 1242932b0c3eSLois Curfman McInnes for (j=0; j<n; j++) { 12431b807ce4Svictorle anonz[ict++] = *v; v += a->lda; 1244932b0c3eSLois Curfman McInnes } 1245932b0c3eSLois Curfman McInnes } 12466f69ff64SBarry Smith ierr = PetscBinaryWrite(fd,anonz,nz,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 1247606d414cSSatish Balay ierr = PetscFree(anonz);CHKERRQ(ierr); 1248f4403165SShri Abhyankar } 12493a40ed3dSBarry Smith PetscFunctionReturn(0); 1250932b0c3eSLois Curfman McInnes } 1251932b0c3eSLois Curfman McInnes 12529804daf3SBarry Smith #include <petscdraw.h> 1253e0877f53SBarry Smith static PetscErrorCode MatView_SeqDense_Draw_Zoom(PetscDraw draw,void *Aa) 1254f1af5d2fSBarry Smith { 1255f1af5d2fSBarry Smith Mat A = (Mat) Aa; 1256f1af5d2fSBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 12576849ba73SBarry Smith PetscErrorCode ierr; 1258383922c3SLisandro Dalcin PetscInt m = A->rmap->n,n = A->cmap->n,i,j; 1259383922c3SLisandro Dalcin int color = PETSC_DRAW_WHITE; 126087828ca2SBarry Smith PetscScalar *v = a->v; 1261b0a32e0cSBarry Smith PetscViewer viewer; 1262b05fc000SLisandro Dalcin PetscReal xl,yl,xr,yr,x_l,x_r,y_l,y_r; 1263f3ef73ceSBarry Smith PetscViewerFormat format; 1264f1af5d2fSBarry Smith 1265f1af5d2fSBarry Smith PetscFunctionBegin; 1266f1af5d2fSBarry Smith ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr); 1267b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 1268b0a32e0cSBarry Smith ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr); 1269f1af5d2fSBarry Smith 1270f1af5d2fSBarry Smith /* Loop over matrix elements drawing boxes */ 1271383922c3SLisandro Dalcin 1272fb9695e5SSatish Balay if (format != PETSC_VIEWER_DRAW_CONTOUR) { 1273383922c3SLisandro Dalcin ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr); 1274f1af5d2fSBarry Smith /* Blue for negative and Red for positive */ 1275f1af5d2fSBarry Smith for (j = 0; j < n; j++) { 1276383922c3SLisandro Dalcin x_l = j; x_r = x_l + 1.0; 1277f1af5d2fSBarry Smith for (i = 0; i < m; i++) { 1278f1af5d2fSBarry Smith y_l = m - i - 1.0; 1279f1af5d2fSBarry Smith y_r = y_l + 1.0; 1280329f5518SBarry Smith if (PetscRealPart(v[j*m+i]) > 0.) { 1281b0a32e0cSBarry Smith color = PETSC_DRAW_RED; 1282329f5518SBarry Smith } else if (PetscRealPart(v[j*m+i]) < 0.) { 1283b0a32e0cSBarry Smith color = PETSC_DRAW_BLUE; 1284f1af5d2fSBarry Smith } else { 1285f1af5d2fSBarry Smith continue; 1286f1af5d2fSBarry Smith } 1287b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr); 1288f1af5d2fSBarry Smith } 1289f1af5d2fSBarry Smith } 1290383922c3SLisandro Dalcin ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr); 1291f1af5d2fSBarry Smith } else { 1292f1af5d2fSBarry Smith /* use contour shading to indicate magnitude of values */ 1293f1af5d2fSBarry Smith /* first determine max of all nonzero values */ 1294b05fc000SLisandro Dalcin PetscReal minv = 0.0, maxv = 0.0; 1295b05fc000SLisandro Dalcin PetscDraw popup; 1296b05fc000SLisandro Dalcin 1297f1af5d2fSBarry Smith for (i=0; i < m*n; i++) { 1298f1af5d2fSBarry Smith if (PetscAbsScalar(v[i]) > maxv) maxv = PetscAbsScalar(v[i]); 1299f1af5d2fSBarry Smith } 1300383922c3SLisandro Dalcin if (minv >= maxv) maxv = minv + PETSC_SMALL; 1301b0a32e0cSBarry Smith ierr = PetscDrawGetPopup(draw,&popup);CHKERRQ(ierr); 130245f3bb6eSLisandro Dalcin ierr = PetscDrawScalePopup(popup,minv,maxv);CHKERRQ(ierr); 1303383922c3SLisandro Dalcin 1304383922c3SLisandro Dalcin ierr = PetscDrawCollectiveBegin(draw);CHKERRQ(ierr); 1305f1af5d2fSBarry Smith for (j=0; j<n; j++) { 1306f1af5d2fSBarry Smith x_l = j; 1307f1af5d2fSBarry Smith x_r = x_l + 1.0; 1308f1af5d2fSBarry Smith for (i=0; i<m; i++) { 1309f1af5d2fSBarry Smith y_l = m - i - 1.0; 1310f1af5d2fSBarry Smith y_r = y_l + 1.0; 1311b05fc000SLisandro Dalcin color = PetscDrawRealToColor(PetscAbsScalar(v[j*m+i]),minv,maxv); 1312b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr); 1313f1af5d2fSBarry Smith } 1314f1af5d2fSBarry Smith } 1315383922c3SLisandro Dalcin ierr = PetscDrawCollectiveEnd(draw);CHKERRQ(ierr); 1316f1af5d2fSBarry Smith } 1317f1af5d2fSBarry Smith PetscFunctionReturn(0); 1318f1af5d2fSBarry Smith } 1319f1af5d2fSBarry Smith 1320e0877f53SBarry Smith static PetscErrorCode MatView_SeqDense_Draw(Mat A,PetscViewer viewer) 1321f1af5d2fSBarry Smith { 1322b0a32e0cSBarry Smith PetscDraw draw; 1323ace3abfcSBarry Smith PetscBool isnull; 1324329f5518SBarry Smith PetscReal xr,yr,xl,yl,h,w; 1325dfbe8321SBarry Smith PetscErrorCode ierr; 1326f1af5d2fSBarry Smith 1327f1af5d2fSBarry Smith PetscFunctionBegin; 1328b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 1329b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 1330abc0a331SBarry Smith if (isnull) PetscFunctionReturn(0); 1331f1af5d2fSBarry Smith 1332d0f46423SBarry Smith xr = A->cmap->n; yr = A->rmap->n; h = yr/10.0; w = xr/10.0; 1333f1af5d2fSBarry Smith xr += w; yr += h; xl = -w; yl = -h; 1334b0a32e0cSBarry Smith ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr); 1335832b7cebSLisandro Dalcin ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr); 1336b0a32e0cSBarry Smith ierr = PetscDrawZoom(draw,MatView_SeqDense_Draw_Zoom,A);CHKERRQ(ierr); 13370298fd71SBarry Smith ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",NULL);CHKERRQ(ierr); 1338832b7cebSLisandro Dalcin ierr = PetscDrawSave(draw);CHKERRQ(ierr); 1339f1af5d2fSBarry Smith PetscFunctionReturn(0); 1340f1af5d2fSBarry Smith } 1341f1af5d2fSBarry Smith 1342dfbe8321SBarry Smith PetscErrorCode MatView_SeqDense(Mat A,PetscViewer viewer) 1343932b0c3eSLois Curfman McInnes { 1344dfbe8321SBarry Smith PetscErrorCode ierr; 1345ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw; 1346932b0c3eSLois Curfman McInnes 13473a40ed3dSBarry Smith PetscFunctionBegin; 1348251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 1349251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 1350251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 13510f5bd95cSBarry Smith 1352c45a1595SBarry Smith if (iascii) { 1353c45a1595SBarry Smith ierr = MatView_SeqDense_ASCII(A,viewer);CHKERRQ(ierr); 13540f5bd95cSBarry Smith } else if (isbinary) { 13553a40ed3dSBarry Smith ierr = MatView_SeqDense_Binary(A,viewer);CHKERRQ(ierr); 1356f1af5d2fSBarry Smith } else if (isdraw) { 1357f1af5d2fSBarry Smith ierr = MatView_SeqDense_Draw(A,viewer);CHKERRQ(ierr); 1358932b0c3eSLois Curfman McInnes } 13593a40ed3dSBarry Smith PetscFunctionReturn(0); 1360932b0c3eSLois Curfman McInnes } 1361289bc588SBarry Smith 1362d3042a70SBarry Smith static PetscErrorCode MatDensePlaceArray_SeqDense(Mat A,const PetscScalar array[]) 1363d3042a70SBarry Smith { 1364d3042a70SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1365d3042a70SBarry Smith 1366d3042a70SBarry Smith PetscFunctionBegin; 1367d3042a70SBarry Smith a->unplacedarray = a->v; 1368d3042a70SBarry Smith a->unplaced_user_alloc = a->user_alloc; 1369d3042a70SBarry Smith a->v = (PetscScalar*) array; 1370d3042a70SBarry Smith PetscFunctionReturn(0); 1371d3042a70SBarry Smith } 1372d3042a70SBarry Smith 1373d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_SeqDense(Mat A) 1374d3042a70SBarry Smith { 1375d3042a70SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1376d3042a70SBarry Smith 1377d3042a70SBarry Smith PetscFunctionBegin; 1378d3042a70SBarry Smith a->v = a->unplacedarray; 1379d3042a70SBarry Smith a->user_alloc = a->unplaced_user_alloc; 1380d3042a70SBarry Smith a->unplacedarray = NULL; 1381d3042a70SBarry Smith PetscFunctionReturn(0); 1382d3042a70SBarry Smith } 1383d3042a70SBarry Smith 1384e0877f53SBarry Smith static PetscErrorCode MatDestroy_SeqDense(Mat mat) 1385289bc588SBarry Smith { 1386ec8511deSBarry Smith Mat_SeqDense *l = (Mat_SeqDense*)mat->data; 1387dfbe8321SBarry Smith PetscErrorCode ierr; 138890f02eecSBarry Smith 13893a40ed3dSBarry Smith PetscFunctionBegin; 1390aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1391d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows %D Cols %D",mat->rmap->n,mat->cmap->n); 1392a5a9c739SBarry Smith #endif 139305b42c5fSBarry Smith ierr = PetscFree(l->pivots);CHKERRQ(ierr); 1394a49dc2a2SStefano Zampini ierr = PetscFree(l->fwork);CHKERRQ(ierr); 1395abc3b08eSStefano Zampini ierr = MatDestroy(&l->ptapwork);CHKERRQ(ierr); 13966857c123SSatish Balay if (!l->user_alloc) {ierr = PetscFree(l->v);CHKERRQ(ierr);} 1397bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 1398dbd8c25aSHong Zhang 1399dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 1400bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr); 1401d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL);CHKERRQ(ierr); 1402d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL);CHKERRQ(ierr); 1403bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr); 14048baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_seqdense_seqaij_C",NULL);CHKERRQ(ierr); 14058baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 14068baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_seqdense_elemental_C",NULL);CHKERRQ(ierr); 14078baccfbdSHong Zhang #endif 1408bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSeqDenseSetPreallocation_C",NULL);CHKERRQ(ierr); 1409bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_seqaij_seqdense_C",NULL);CHKERRQ(ierr); 1410bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_seqaij_seqdense_C",NULL);CHKERRQ(ierr); 1411bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_seqaij_seqdense_C",NULL);CHKERRQ(ierr); 1412abc3b08eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatPtAP_seqaij_seqdense_C",NULL);CHKERRQ(ierr); 14133bf78175SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMult_seqaij_seqdense_C",NULL);CHKERRQ(ierr); 14143bf78175SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_seqaij_seqdense_C",NULL);CHKERRQ(ierr); 14153bf78175SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_seqaij_seqdense_C",NULL);CHKERRQ(ierr); 14163a40ed3dSBarry Smith PetscFunctionReturn(0); 1417289bc588SBarry Smith } 1418289bc588SBarry Smith 1419e0877f53SBarry Smith static PetscErrorCode MatTranspose_SeqDense(Mat A,MatReuse reuse,Mat *matout) 1420289bc588SBarry Smith { 1421c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 14226849ba73SBarry Smith PetscErrorCode ierr; 142313f74950SBarry Smith PetscInt k,j,m,n,M; 142487828ca2SBarry Smith PetscScalar *v,tmp; 142548b35521SBarry Smith 14263a40ed3dSBarry Smith PetscFunctionBegin; 1427d0f46423SBarry Smith v = mat->v; m = A->rmap->n; M = mat->lda; n = A->cmap->n; 1428cf37664fSBarry Smith if (reuse == MAT_INPLACE_MATRIX) { /* in place transpose */ 1429e7e72b3dSBarry Smith if (m != n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can not transpose non-square matrix in place"); 1430e7e72b3dSBarry Smith else { 1431d3e5ee88SLois Curfman McInnes for (j=0; j<m; j++) { 1432289bc588SBarry Smith for (k=0; k<j; k++) { 14331b807ce4Svictorle tmp = v[j + k*M]; 14341b807ce4Svictorle v[j + k*M] = v[k + j*M]; 14351b807ce4Svictorle v[k + j*M] = tmp; 1436289bc588SBarry Smith } 1437289bc588SBarry Smith } 1438d64ed03dSBarry Smith } 14393a40ed3dSBarry Smith } else { /* out-of-place transpose */ 1440d3e5ee88SLois Curfman McInnes Mat tmat; 1441ec8511deSBarry Smith Mat_SeqDense *tmatd; 144287828ca2SBarry Smith PetscScalar *v2; 1443af36a384SStefano Zampini PetscInt M2; 1444ea709b57SSatish Balay 1445fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX) { 1446ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&tmat);CHKERRQ(ierr); 1447d0f46423SBarry Smith ierr = MatSetSizes(tmat,A->cmap->n,A->rmap->n,A->cmap->n,A->rmap->n);CHKERRQ(ierr); 14487adad957SLisandro Dalcin ierr = MatSetType(tmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 14490298fd71SBarry Smith ierr = MatSeqDenseSetPreallocation(tmat,NULL);CHKERRQ(ierr); 1450fc4dec0aSBarry Smith } else { 1451fc4dec0aSBarry Smith tmat = *matout; 1452fc4dec0aSBarry Smith } 1453ec8511deSBarry Smith tmatd = (Mat_SeqDense*)tmat->data; 1454af36a384SStefano Zampini v = mat->v; v2 = tmatd->v; M2 = tmatd->lda; 1455d3e5ee88SLois Curfman McInnes for (j=0; j<n; j++) { 1456af36a384SStefano Zampini for (k=0; k<m; k++) v2[j + k*M2] = v[k + j*M]; 1457d3e5ee88SLois Curfman McInnes } 14586d4a8577SBarry Smith ierr = MatAssemblyBegin(tmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 14596d4a8577SBarry Smith ierr = MatAssemblyEnd(tmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1460d3e5ee88SLois Curfman McInnes *matout = tmat; 146148b35521SBarry Smith } 14623a40ed3dSBarry Smith PetscFunctionReturn(0); 1463289bc588SBarry Smith } 1464289bc588SBarry Smith 1465e0877f53SBarry Smith static PetscErrorCode MatEqual_SeqDense(Mat A1,Mat A2,PetscBool *flg) 1466289bc588SBarry Smith { 1467c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat1 = (Mat_SeqDense*)A1->data; 1468c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat2 = (Mat_SeqDense*)A2->data; 146913f74950SBarry Smith PetscInt i,j; 1470a2ea699eSBarry Smith PetscScalar *v1,*v2; 14719ea5d5aeSSatish Balay 14723a40ed3dSBarry Smith PetscFunctionBegin; 1473d0f46423SBarry Smith if (A1->rmap->n != A2->rmap->n) {*flg = PETSC_FALSE; PetscFunctionReturn(0);} 1474d0f46423SBarry Smith if (A1->cmap->n != A2->cmap->n) {*flg = PETSC_FALSE; PetscFunctionReturn(0);} 1475d0f46423SBarry Smith for (i=0; i<A1->rmap->n; i++) { 14761b807ce4Svictorle v1 = mat1->v+i; v2 = mat2->v+i; 1477d0f46423SBarry Smith for (j=0; j<A1->cmap->n; j++) { 14783a40ed3dSBarry Smith if (*v1 != *v2) {*flg = PETSC_FALSE; PetscFunctionReturn(0);} 14791b807ce4Svictorle v1 += mat1->lda; v2 += mat2->lda; 14801b807ce4Svictorle } 1481289bc588SBarry Smith } 148277c4ece6SBarry Smith *flg = PETSC_TRUE; 14833a40ed3dSBarry Smith PetscFunctionReturn(0); 1484289bc588SBarry Smith } 1485289bc588SBarry Smith 1486e0877f53SBarry Smith static PetscErrorCode MatGetDiagonal_SeqDense(Mat A,Vec v) 1487289bc588SBarry Smith { 1488c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 1489dfbe8321SBarry Smith PetscErrorCode ierr; 149013f74950SBarry Smith PetscInt i,n,len; 149187828ca2SBarry Smith PetscScalar *x,zero = 0.0; 149244cd7ae7SLois Curfman McInnes 14933a40ed3dSBarry Smith PetscFunctionBegin; 14942dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 14957a97a34bSBarry Smith ierr = VecGetSize(v,&n);CHKERRQ(ierr); 14961ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 1497d0f46423SBarry Smith len = PetscMin(A->rmap->n,A->cmap->n); 1498e32f2f54SBarry Smith if (n != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 149944cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 15001b807ce4Svictorle x[i] = mat->v[i*mat->lda + i]; 1501289bc588SBarry Smith } 15021ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 15033a40ed3dSBarry Smith PetscFunctionReturn(0); 1504289bc588SBarry Smith } 1505289bc588SBarry Smith 1506e0877f53SBarry Smith static PetscErrorCode MatDiagonalScale_SeqDense(Mat A,Vec ll,Vec rr) 1507289bc588SBarry Smith { 1508c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 1509f1ceaac6SMatthew G. Knepley const PetscScalar *l,*r; 1510f1ceaac6SMatthew G. Knepley PetscScalar x,*v; 1511dfbe8321SBarry Smith PetscErrorCode ierr; 1512d0f46423SBarry Smith PetscInt i,j,m = A->rmap->n,n = A->cmap->n; 151355659b69SBarry Smith 15143a40ed3dSBarry Smith PetscFunctionBegin; 151528988994SBarry Smith if (ll) { 15167a97a34bSBarry Smith ierr = VecGetSize(ll,&m);CHKERRQ(ierr); 1517f1ceaac6SMatthew G. Knepley ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr); 1518e32f2f54SBarry Smith if (m != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vec wrong size"); 1519da3a660dSBarry Smith for (i=0; i<m; i++) { 1520da3a660dSBarry Smith x = l[i]; 1521da3a660dSBarry Smith v = mat->v + i; 1522b43bac26SStefano Zampini for (j=0; j<n; j++) { (*v) *= x; v+= mat->lda;} 1523da3a660dSBarry Smith } 1524f1ceaac6SMatthew G. Knepley ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr); 1525eb3f19e4SBarry Smith ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr); 1526da3a660dSBarry Smith } 152728988994SBarry Smith if (rr) { 15287a97a34bSBarry Smith ierr = VecGetSize(rr,&n);CHKERRQ(ierr); 1529f1ceaac6SMatthew G. Knepley ierr = VecGetArrayRead(rr,&r);CHKERRQ(ierr); 1530e32f2f54SBarry Smith if (n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec wrong size"); 1531da3a660dSBarry Smith for (i=0; i<n; i++) { 1532da3a660dSBarry Smith x = r[i]; 1533b43bac26SStefano Zampini v = mat->v + i*mat->lda; 15342205254eSKarl Rupp for (j=0; j<m; j++) (*v++) *= x; 1535da3a660dSBarry Smith } 1536f1ceaac6SMatthew G. Knepley ierr = VecRestoreArrayRead(rr,&r);CHKERRQ(ierr); 1537eb3f19e4SBarry Smith ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr); 1538da3a660dSBarry Smith } 15393a40ed3dSBarry Smith PetscFunctionReturn(0); 1540289bc588SBarry Smith } 1541289bc588SBarry Smith 1542e0877f53SBarry Smith static PetscErrorCode MatNorm_SeqDense(Mat A,NormType type,PetscReal *nrm) 1543289bc588SBarry Smith { 1544c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 154587828ca2SBarry Smith PetscScalar *v = mat->v; 1546329f5518SBarry Smith PetscReal sum = 0.0; 1547d0f46423SBarry Smith PetscInt lda =mat->lda,m=A->rmap->n,i,j; 1548efee365bSSatish Balay PetscErrorCode ierr; 154955659b69SBarry Smith 15503a40ed3dSBarry Smith PetscFunctionBegin; 1551289bc588SBarry Smith if (type == NORM_FROBENIUS) { 1552a5ce6ee0Svictorle if (lda>m) { 1553d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 1554a5ce6ee0Svictorle v = mat->v+j*lda; 1555a5ce6ee0Svictorle for (i=0; i<m; i++) { 1556a5ce6ee0Svictorle sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 1557a5ce6ee0Svictorle } 1558a5ce6ee0Svictorle } 1559a5ce6ee0Svictorle } else { 1560570b7f6dSBarry Smith #if defined(PETSC_USE_REAL___FP16) 1561570b7f6dSBarry Smith PetscBLASInt one = 1,cnt = A->cmap->n*A->rmap->n; 1562570b7f6dSBarry Smith *nrm = BLASnrm2_(&cnt,v,&one); 1563570b7f6dSBarry Smith } 1564570b7f6dSBarry Smith #else 1565d0f46423SBarry Smith for (i=0; i<A->cmap->n*A->rmap->n; i++) { 1566329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 1567289bc588SBarry Smith } 1568a5ce6ee0Svictorle } 15698f1a2a5eSBarry Smith *nrm = PetscSqrtReal(sum); 1570570b7f6dSBarry Smith #endif 1571dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*A->cmap->n*A->rmap->n);CHKERRQ(ierr); 15723a40ed3dSBarry Smith } else if (type == NORM_1) { 1573064f8208SBarry Smith *nrm = 0.0; 1574d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 15751b807ce4Svictorle v = mat->v + j*mat->lda; 1576289bc588SBarry Smith sum = 0.0; 1577d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++) { 157833a8263dSBarry Smith sum += PetscAbsScalar(*v); v++; 1579289bc588SBarry Smith } 1580064f8208SBarry Smith if (sum > *nrm) *nrm = sum; 1581289bc588SBarry Smith } 1582eb3f19e4SBarry Smith ierr = PetscLogFlops(1.0*A->cmap->n*A->rmap->n);CHKERRQ(ierr); 15833a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { 1584064f8208SBarry Smith *nrm = 0.0; 1585d0f46423SBarry Smith for (j=0; j<A->rmap->n; j++) { 1586289bc588SBarry Smith v = mat->v + j; 1587289bc588SBarry Smith sum = 0.0; 1588d0f46423SBarry Smith for (i=0; i<A->cmap->n; i++) { 15891b807ce4Svictorle sum += PetscAbsScalar(*v); v += mat->lda; 1590289bc588SBarry Smith } 1591064f8208SBarry Smith if (sum > *nrm) *nrm = sum; 1592289bc588SBarry Smith } 1593eb3f19e4SBarry Smith ierr = PetscLogFlops(1.0*A->cmap->n*A->rmap->n);CHKERRQ(ierr); 1594e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No two norm"); 15953a40ed3dSBarry Smith PetscFunctionReturn(0); 1596289bc588SBarry Smith } 1597289bc588SBarry Smith 1598e0877f53SBarry Smith static PetscErrorCode MatSetOption_SeqDense(Mat A,MatOption op,PetscBool flg) 1599289bc588SBarry Smith { 1600c0bbcb79SLois Curfman McInnes Mat_SeqDense *aij = (Mat_SeqDense*)A->data; 160163ba0a88SBarry Smith PetscErrorCode ierr; 160267e560aaSBarry Smith 16033a40ed3dSBarry Smith PetscFunctionBegin; 1604b5a2b587SKris Buschelman switch (op) { 1605b5a2b587SKris Buschelman case MAT_ROW_ORIENTED: 16064e0d8c25SBarry Smith aij->roworiented = flg; 1607b5a2b587SKris Buschelman break; 1608512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1609b5a2b587SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 16103971808eSMatthew Knepley case MAT_NEW_NONZERO_ALLOCATION_ERR: 16114e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 161213fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 1613b5a2b587SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1614b5a2b587SKris Buschelman case MAT_USE_HASH_TABLE: 16150f8fb01aSBarry Smith case MAT_IGNORE_ZERO_ENTRIES: 16165021d80fSJed Brown case MAT_IGNORE_LOWER_TRIANGULAR: 16175021d80fSJed Brown ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 16185021d80fSJed Brown break; 16195021d80fSJed Brown case MAT_SPD: 162077e54ba9SKris Buschelman case MAT_SYMMETRIC: 162177e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 16229a4540c5SBarry Smith case MAT_HERMITIAN: 16239a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 16245021d80fSJed Brown /* These options are handled directly by MatSetOption() */ 162577e54ba9SKris Buschelman break; 1626b5a2b587SKris Buschelman default: 1627e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 16283a40ed3dSBarry Smith } 16293a40ed3dSBarry Smith PetscFunctionReturn(0); 1630289bc588SBarry Smith } 1631289bc588SBarry Smith 1632e0877f53SBarry Smith static PetscErrorCode MatZeroEntries_SeqDense(Mat A) 16336f0a148fSBarry Smith { 1634ec8511deSBarry Smith Mat_SeqDense *l = (Mat_SeqDense*)A->data; 16356849ba73SBarry Smith PetscErrorCode ierr; 1636d0f46423SBarry Smith PetscInt lda=l->lda,m=A->rmap->n,j; 16373a40ed3dSBarry Smith 16383a40ed3dSBarry Smith PetscFunctionBegin; 1639a5ce6ee0Svictorle if (lda>m) { 1640d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 1641a5ce6ee0Svictorle ierr = PetscMemzero(l->v+j*lda,m*sizeof(PetscScalar));CHKERRQ(ierr); 1642a5ce6ee0Svictorle } 1643a5ce6ee0Svictorle } else { 1644d0f46423SBarry Smith ierr = PetscMemzero(l->v,A->rmap->n*A->cmap->n*sizeof(PetscScalar));CHKERRQ(ierr); 1645a5ce6ee0Svictorle } 16463a40ed3dSBarry Smith PetscFunctionReturn(0); 16476f0a148fSBarry Smith } 16486f0a148fSBarry Smith 1649e0877f53SBarry Smith static PetscErrorCode MatZeroRows_SeqDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 16506f0a148fSBarry Smith { 165197b48c8fSBarry Smith PetscErrorCode ierr; 1652ec8511deSBarry Smith Mat_SeqDense *l = (Mat_SeqDense*)A->data; 1653b9679d65SBarry Smith PetscInt m = l->lda, n = A->cmap->n, i,j; 165497b48c8fSBarry Smith PetscScalar *slot,*bb; 165597b48c8fSBarry Smith const PetscScalar *xx; 165655659b69SBarry Smith 16573a40ed3dSBarry Smith PetscFunctionBegin; 1658b9679d65SBarry Smith #if defined(PETSC_USE_DEBUG) 1659b9679d65SBarry Smith for (i=0; i<N; i++) { 1660b9679d65SBarry Smith if (rows[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row requested to be zeroed"); 1661b9679d65SBarry Smith if (rows[i] >= A->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D requested to be zeroed greater than or equal number of rows %D",rows[i],A->rmap->n); 1662b9679d65SBarry Smith } 1663b9679d65SBarry Smith #endif 1664b9679d65SBarry Smith 166597b48c8fSBarry Smith /* fix right hand side if needed */ 166697b48c8fSBarry Smith if (x && b) { 166797b48c8fSBarry Smith ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr); 166897b48c8fSBarry Smith ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 16692205254eSKarl Rupp for (i=0; i<N; i++) bb[rows[i]] = diag*xx[rows[i]]; 167097b48c8fSBarry Smith ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr); 167197b48c8fSBarry Smith ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 167297b48c8fSBarry Smith } 167397b48c8fSBarry Smith 16746f0a148fSBarry Smith for (i=0; i<N; i++) { 16756f0a148fSBarry Smith slot = l->v + rows[i]; 1676b9679d65SBarry Smith for (j=0; j<n; j++) { *slot = 0.0; slot += m;} 16776f0a148fSBarry Smith } 1678f4df32b1SMatthew Knepley if (diag != 0.0) { 1679b9679d65SBarry Smith if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only coded for square matrices"); 16806f0a148fSBarry Smith for (i=0; i<N; i++) { 1681b9679d65SBarry Smith slot = l->v + (m+1)*rows[i]; 1682f4df32b1SMatthew Knepley *slot = diag; 16836f0a148fSBarry Smith } 16846f0a148fSBarry Smith } 16853a40ed3dSBarry Smith PetscFunctionReturn(0); 16866f0a148fSBarry Smith } 1687557bce09SLois Curfman McInnes 1688e0877f53SBarry Smith static PetscErrorCode MatDenseGetArray_SeqDense(Mat A,PetscScalar *array[]) 168964e87e97SBarry Smith { 1690c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 16913a40ed3dSBarry Smith 16923a40ed3dSBarry Smith PetscFunctionBegin; 1693e32f2f54SBarry Smith if (mat->lda != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Cannot get array for Dense matrices with LDA different from number of rows"); 169464e87e97SBarry Smith *array = mat->v; 16953a40ed3dSBarry Smith PetscFunctionReturn(0); 169664e87e97SBarry Smith } 16970754003eSLois Curfman McInnes 1698e0877f53SBarry Smith static PetscErrorCode MatDenseRestoreArray_SeqDense(Mat A,PetscScalar *array[]) 1699ff14e315SSatish Balay { 17003a40ed3dSBarry Smith PetscFunctionBegin; 170109b544d4SBarry Smith *array = 0; /* user cannot accidently use the array later */ 17023a40ed3dSBarry Smith PetscFunctionReturn(0); 1703ff14e315SSatish Balay } 17040754003eSLois Curfman McInnes 1705dec5eb66SMatthew G Knepley /*@C 17068c778c55SBarry Smith MatDenseGetArray - gives access to the array where the data for a SeqDense matrix is stored 170773a71a0fSBarry Smith 170873a71a0fSBarry Smith Not Collective 170973a71a0fSBarry Smith 171073a71a0fSBarry Smith Input Parameter: 1711579dbff0SBarry Smith . mat - a MATSEQDENSE or MATMPIDENSE matrix 171273a71a0fSBarry Smith 171373a71a0fSBarry Smith Output Parameter: 171473a71a0fSBarry Smith . array - pointer to the data 171573a71a0fSBarry Smith 171673a71a0fSBarry Smith Level: intermediate 171773a71a0fSBarry Smith 17188c778c55SBarry Smith .seealso: MatDenseRestoreArray() 171973a71a0fSBarry Smith @*/ 17208c778c55SBarry Smith PetscErrorCode MatDenseGetArray(Mat A,PetscScalar **array) 172173a71a0fSBarry Smith { 172273a71a0fSBarry Smith PetscErrorCode ierr; 172373a71a0fSBarry Smith 172473a71a0fSBarry Smith PetscFunctionBegin; 17258c778c55SBarry Smith ierr = PetscUseMethod(A,"MatDenseGetArray_C",(Mat,PetscScalar**),(A,array));CHKERRQ(ierr); 172673a71a0fSBarry Smith PetscFunctionReturn(0); 172773a71a0fSBarry Smith } 172873a71a0fSBarry Smith 1729dec5eb66SMatthew G Knepley /*@C 1730579dbff0SBarry Smith MatDenseRestoreArray - returns access to the array where the data for a dense matrix is stored obtained by MatDenseGetArray() 173173a71a0fSBarry Smith 173273a71a0fSBarry Smith Not Collective 173373a71a0fSBarry Smith 173473a71a0fSBarry Smith Input Parameters: 1735579dbff0SBarry Smith . mat - a MATSEQDENSE or MATMPIDENSE matrix 173673a71a0fSBarry Smith . array - pointer to the data 173773a71a0fSBarry Smith 173873a71a0fSBarry Smith Level: intermediate 173973a71a0fSBarry Smith 17408c778c55SBarry Smith .seealso: MatDenseGetArray() 174173a71a0fSBarry Smith @*/ 17428c778c55SBarry Smith PetscErrorCode MatDenseRestoreArray(Mat A,PetscScalar **array) 174373a71a0fSBarry Smith { 174473a71a0fSBarry Smith PetscErrorCode ierr; 174573a71a0fSBarry Smith 174673a71a0fSBarry Smith PetscFunctionBegin; 17478c778c55SBarry Smith ierr = PetscUseMethod(A,"MatDenseRestoreArray_C",(Mat,PetscScalar**),(A,array));CHKERRQ(ierr); 174873a71a0fSBarry Smith PetscFunctionReturn(0); 174973a71a0fSBarry Smith } 175073a71a0fSBarry Smith 17517dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_SeqDense(Mat A,IS isrow,IS iscol,PetscInt cs,MatReuse scall,Mat *B) 17520754003eSLois Curfman McInnes { 1753c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 17546849ba73SBarry Smith PetscErrorCode ierr; 17555d0c19d7SBarry Smith PetscInt i,j,nrows,ncols; 17565d0c19d7SBarry Smith const PetscInt *irow,*icol; 175787828ca2SBarry Smith PetscScalar *av,*bv,*v = mat->v; 17580754003eSLois Curfman McInnes Mat newmat; 17590754003eSLois Curfman McInnes 17603a40ed3dSBarry Smith PetscFunctionBegin; 176178b31e54SBarry Smith ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 176278b31e54SBarry Smith ierr = ISGetIndices(iscol,&icol);CHKERRQ(ierr); 1763e03a110bSBarry Smith ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 1764e03a110bSBarry Smith ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 17650754003eSLois Curfman McInnes 1766182d2002SSatish Balay /* Check submatrixcall */ 1767182d2002SSatish Balay if (scall == MAT_REUSE_MATRIX) { 176813f74950SBarry Smith PetscInt n_cols,n_rows; 1769182d2002SSatish Balay ierr = MatGetSize(*B,&n_rows,&n_cols);CHKERRQ(ierr); 177021a2c019SBarry Smith if (n_rows != nrows || n_cols != ncols) { 1771f746d493SDmitry Karpeev /* resize the result matrix to match number of requested rows/columns */ 1772c61587bbSBarry Smith ierr = MatSetSizes(*B,nrows,ncols,nrows,ncols);CHKERRQ(ierr); 177321a2c019SBarry Smith } 1774182d2002SSatish Balay newmat = *B; 1775182d2002SSatish Balay } else { 17760754003eSLois Curfman McInnes /* Create and fill new matrix */ 1777ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr); 1778f69a0ea3SMatthew Knepley ierr = MatSetSizes(newmat,nrows,ncols,nrows,ncols);CHKERRQ(ierr); 17797adad957SLisandro Dalcin ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 17800298fd71SBarry Smith ierr = MatSeqDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 1781182d2002SSatish Balay } 1782182d2002SSatish Balay 1783182d2002SSatish Balay /* Now extract the data pointers and do the copy,column at a time */ 1784182d2002SSatish Balay bv = ((Mat_SeqDense*)newmat->data)->v; 1785182d2002SSatish Balay 1786182d2002SSatish Balay for (i=0; i<ncols; i++) { 17876de62eeeSBarry Smith av = v + mat->lda*icol[i]; 17882205254eSKarl Rupp for (j=0; j<nrows; j++) *bv++ = av[irow[j]]; 17890754003eSLois Curfman McInnes } 1790182d2002SSatish Balay 1791182d2002SSatish Balay /* Assemble the matrices so that the correct flags are set */ 17926d4a8577SBarry Smith ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 17936d4a8577SBarry Smith ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 17940754003eSLois Curfman McInnes 17950754003eSLois Curfman McInnes /* Free work space */ 179678b31e54SBarry Smith ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 179778b31e54SBarry Smith ierr = ISRestoreIndices(iscol,&icol);CHKERRQ(ierr); 1798182d2002SSatish Balay *B = newmat; 17993a40ed3dSBarry Smith PetscFunctionReturn(0); 18000754003eSLois Curfman McInnes } 18010754003eSLois Curfman McInnes 18027dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrices_SeqDense(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1803905e6a2fSBarry Smith { 18046849ba73SBarry Smith PetscErrorCode ierr; 180513f74950SBarry Smith PetscInt i; 1806905e6a2fSBarry Smith 18073a40ed3dSBarry Smith PetscFunctionBegin; 1808905e6a2fSBarry Smith if (scall == MAT_INITIAL_MATRIX) { 1809df750dc8SHong Zhang ierr = PetscCalloc1(n+1,B);CHKERRQ(ierr); 1810905e6a2fSBarry Smith } 1811905e6a2fSBarry Smith 1812905e6a2fSBarry Smith for (i=0; i<n; i++) { 18137dae84e0SHong Zhang ierr = MatCreateSubMatrix_SeqDense(A,irow[i],icol[i],PETSC_DECIDE,scall,&(*B)[i]);CHKERRQ(ierr); 1814905e6a2fSBarry Smith } 18153a40ed3dSBarry Smith PetscFunctionReturn(0); 1816905e6a2fSBarry Smith } 1817905e6a2fSBarry Smith 1818e0877f53SBarry Smith static PetscErrorCode MatAssemblyBegin_SeqDense(Mat mat,MatAssemblyType mode) 1819c0aa2d19SHong Zhang { 1820c0aa2d19SHong Zhang PetscFunctionBegin; 1821c0aa2d19SHong Zhang PetscFunctionReturn(0); 1822c0aa2d19SHong Zhang } 1823c0aa2d19SHong Zhang 1824e0877f53SBarry Smith static PetscErrorCode MatAssemblyEnd_SeqDense(Mat mat,MatAssemblyType mode) 1825c0aa2d19SHong Zhang { 1826c0aa2d19SHong Zhang PetscFunctionBegin; 1827c0aa2d19SHong Zhang PetscFunctionReturn(0); 1828c0aa2d19SHong Zhang } 1829c0aa2d19SHong Zhang 1830e0877f53SBarry Smith static PetscErrorCode MatCopy_SeqDense(Mat A,Mat B,MatStructure str) 18314b0e389bSBarry Smith { 18324b0e389bSBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data,*b = (Mat_SeqDense*)B->data; 18336849ba73SBarry Smith PetscErrorCode ierr; 1834d0f46423SBarry Smith PetscInt lda1=a->lda,lda2=b->lda, m=A->rmap->n,n=A->cmap->n, j; 18353a40ed3dSBarry Smith 18363a40ed3dSBarry Smith PetscFunctionBegin; 183733f4a19fSKris Buschelman /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 183833f4a19fSKris Buschelman if (A->ops->copy != B->ops->copy) { 1839cb5b572fSBarry Smith ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 18403a40ed3dSBarry Smith PetscFunctionReturn(0); 18413a40ed3dSBarry Smith } 1842e32f2f54SBarry Smith if (m != B->rmap->n || n != B->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"size(B) != size(A)"); 1843a5ce6ee0Svictorle if (lda1>m || lda2>m) { 18440dbb7854Svictorle for (j=0; j<n; j++) { 1845a5ce6ee0Svictorle ierr = PetscMemcpy(b->v+j*lda2,a->v+j*lda1,m*sizeof(PetscScalar));CHKERRQ(ierr); 1846a5ce6ee0Svictorle } 1847a5ce6ee0Svictorle } else { 1848d0f46423SBarry Smith ierr = PetscMemcpy(b->v,a->v,A->rmap->n*A->cmap->n*sizeof(PetscScalar));CHKERRQ(ierr); 1849a5ce6ee0Svictorle } 1850cdc753b6SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)B);CHKERRQ(ierr); 1851273d9f13SBarry Smith PetscFunctionReturn(0); 1852273d9f13SBarry Smith } 1853273d9f13SBarry Smith 1854e0877f53SBarry Smith static PetscErrorCode MatSetUp_SeqDense(Mat A) 1855273d9f13SBarry Smith { 1856dfbe8321SBarry Smith PetscErrorCode ierr; 1857273d9f13SBarry Smith 1858273d9f13SBarry Smith PetscFunctionBegin; 1859273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(A,0);CHKERRQ(ierr); 18603a40ed3dSBarry Smith PetscFunctionReturn(0); 18614b0e389bSBarry Smith } 18624b0e389bSBarry Smith 1863ba337c44SJed Brown static PetscErrorCode MatConjugate_SeqDense(Mat A) 1864ba337c44SJed Brown { 1865ba337c44SJed Brown Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1866ba337c44SJed Brown PetscInt i,nz = A->rmap->n*A->cmap->n; 1867ba337c44SJed Brown PetscScalar *aa = a->v; 1868ba337c44SJed Brown 1869ba337c44SJed Brown PetscFunctionBegin; 1870ba337c44SJed Brown for (i=0; i<nz; i++) aa[i] = PetscConj(aa[i]); 1871ba337c44SJed Brown PetscFunctionReturn(0); 1872ba337c44SJed Brown } 1873ba337c44SJed Brown 1874ba337c44SJed Brown static PetscErrorCode MatRealPart_SeqDense(Mat A) 1875ba337c44SJed Brown { 1876ba337c44SJed Brown Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1877ba337c44SJed Brown PetscInt i,nz = A->rmap->n*A->cmap->n; 1878ba337c44SJed Brown PetscScalar *aa = a->v; 1879ba337c44SJed Brown 1880ba337c44SJed Brown PetscFunctionBegin; 1881ba337c44SJed Brown for (i=0; i<nz; i++) aa[i] = PetscRealPart(aa[i]); 1882ba337c44SJed Brown PetscFunctionReturn(0); 1883ba337c44SJed Brown } 1884ba337c44SJed Brown 1885ba337c44SJed Brown static PetscErrorCode MatImaginaryPart_SeqDense(Mat A) 1886ba337c44SJed Brown { 1887ba337c44SJed Brown Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1888ba337c44SJed Brown PetscInt i,nz = A->rmap->n*A->cmap->n; 1889ba337c44SJed Brown PetscScalar *aa = a->v; 1890ba337c44SJed Brown 1891ba337c44SJed Brown PetscFunctionBegin; 1892ba337c44SJed Brown for (i=0; i<nz; i++) aa[i] = PetscImaginaryPart(aa[i]); 1893ba337c44SJed Brown PetscFunctionReturn(0); 1894ba337c44SJed Brown } 1895284134d9SBarry Smith 1896a9fe9ddaSSatish Balay /* ----------------------------------------------------------------*/ 1897150d2497SBarry Smith PETSC_INTERN PetscErrorCode MatMatMult_SeqDense_SeqDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 1898a9fe9ddaSSatish Balay { 1899a9fe9ddaSSatish Balay PetscErrorCode ierr; 1900a9fe9ddaSSatish Balay 1901a9fe9ddaSSatish Balay PetscFunctionBegin; 1902a9fe9ddaSSatish Balay if (scall == MAT_INITIAL_MATRIX) { 19033ff4c91cSHong Zhang ierr = PetscLogEventBegin(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 1904a9fe9ddaSSatish Balay ierr = MatMatMultSymbolic_SeqDense_SeqDense(A,B,fill,C);CHKERRQ(ierr); 19053ff4c91cSHong Zhang ierr = PetscLogEventEnd(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 1906a9fe9ddaSSatish Balay } 19073ff4c91cSHong Zhang ierr = PetscLogEventBegin(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 1908a9fe9ddaSSatish Balay ierr = MatMatMultNumeric_SeqDense_SeqDense(A,B,*C);CHKERRQ(ierr); 19093ff4c91cSHong Zhang ierr = PetscLogEventEnd(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 1910a9fe9ddaSSatish Balay PetscFunctionReturn(0); 1911a9fe9ddaSSatish Balay } 1912a9fe9ddaSSatish Balay 1913a9fe9ddaSSatish Balay PetscErrorCode MatMatMultSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat *C) 1914a9fe9ddaSSatish Balay { 1915ee16a9a1SHong Zhang PetscErrorCode ierr; 1916d0f46423SBarry Smith PetscInt m=A->rmap->n,n=B->cmap->n; 1917ee16a9a1SHong Zhang Mat Cmat; 1918a9fe9ddaSSatish Balay 1919ee16a9a1SHong Zhang PetscFunctionBegin; 1920e32f2f54SBarry Smith if (A->cmap->n != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"A->cmap->n %d != B->rmap->n %d\n",A->cmap->n,B->rmap->n); 1921ee16a9a1SHong Zhang ierr = MatCreate(PETSC_COMM_SELF,&Cmat);CHKERRQ(ierr); 1922ee16a9a1SHong Zhang ierr = MatSetSizes(Cmat,m,n,m,n);CHKERRQ(ierr); 1923ee16a9a1SHong Zhang ierr = MatSetType(Cmat,MATSEQDENSE);CHKERRQ(ierr); 19240298fd71SBarry Smith ierr = MatSeqDenseSetPreallocation(Cmat,NULL);CHKERRQ(ierr); 1925d73949e8SHong Zhang 1926ee16a9a1SHong Zhang *C = Cmat; 1927ee16a9a1SHong Zhang PetscFunctionReturn(0); 1928ee16a9a1SHong Zhang } 1929a9fe9ddaSSatish Balay 1930a9fe9ddaSSatish Balay PetscErrorCode MatMatMultNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C) 1931a9fe9ddaSSatish Balay { 1932a9fe9ddaSSatish Balay Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1933a9fe9ddaSSatish Balay Mat_SeqDense *b = (Mat_SeqDense*)B->data; 1934a9fe9ddaSSatish Balay Mat_SeqDense *c = (Mat_SeqDense*)C->data; 19350805154bSBarry Smith PetscBLASInt m,n,k; 1936a9fe9ddaSSatish Balay PetscScalar _DOne=1.0,_DZero=0.0; 1937c5df96a5SBarry Smith PetscErrorCode ierr; 1938fd4e9aacSBarry Smith PetscBool flg; 1939a9fe9ddaSSatish Balay 1940a9fe9ddaSSatish Balay PetscFunctionBegin; 1941fd4e9aacSBarry Smith ierr = PetscObjectTypeCompare((PetscObject)B,MATSEQDENSE,&flg);CHKERRQ(ierr); 1942fd4e9aacSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Second matrix must be dense"); 1943fd4e9aacSBarry Smith 1944fd4e9aacSBarry Smith /* Handle case where where user provided the final C matrix rather than calling MatMatMult() with MAT_INITIAL_MATRIX*/ 1945fd4e9aacSBarry Smith ierr = PetscObjectTypeCompare((PetscObject)A,MATSEQAIJ,&flg);CHKERRQ(ierr); 1946fd4e9aacSBarry Smith if (flg) { 1947fd4e9aacSBarry Smith C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqDense; 1948fd4e9aacSBarry Smith ierr = (*C->ops->matmultnumeric)(A,B,C);CHKERRQ(ierr); 1949fd4e9aacSBarry Smith PetscFunctionReturn(0); 1950fd4e9aacSBarry Smith } 1951fd4e9aacSBarry Smith 1952fd4e9aacSBarry Smith ierr = PetscObjectTypeCompare((PetscObject)A,MATSEQDENSE,&flg);CHKERRQ(ierr); 1953fd4e9aacSBarry Smith if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"First matrix must be dense"); 19548208b9aeSStefano Zampini ierr = PetscBLASIntCast(C->rmap->n,&m);CHKERRQ(ierr); 19558208b9aeSStefano Zampini ierr = PetscBLASIntCast(C->cmap->n,&n);CHKERRQ(ierr); 1956c5df96a5SBarry Smith ierr = PetscBLASIntCast(A->cmap->n,&k);CHKERRQ(ierr); 19575ca1cc5dSStefano Zampini PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&m,&n,&k,&_DOne,a->v,&a->lda,b->v,&b->lda,&_DZero,c->v,&c->lda)); 1958a9fe9ddaSSatish Balay PetscFunctionReturn(0); 1959a9fe9ddaSSatish Balay } 1960a9fe9ddaSSatish Balay 196169f65d41SStefano Zampini PetscErrorCode MatMatTransposeMult_SeqDense_SeqDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 196269f65d41SStefano Zampini { 196369f65d41SStefano Zampini PetscErrorCode ierr; 196469f65d41SStefano Zampini 196569f65d41SStefano Zampini PetscFunctionBegin; 196669f65d41SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 196769f65d41SStefano Zampini ierr = PetscLogEventBegin(MAT_MatTransposeMultSymbolic,A,B,0,0);CHKERRQ(ierr); 196869f65d41SStefano Zampini ierr = MatMatTransposeMultSymbolic_SeqDense_SeqDense(A,B,fill,C);CHKERRQ(ierr); 196969f65d41SStefano Zampini ierr = PetscLogEventEnd(MAT_MatTransposeMultSymbolic,A,B,0,0);CHKERRQ(ierr); 197069f65d41SStefano Zampini } 197169f65d41SStefano Zampini ierr = PetscLogEventBegin(MAT_MatTransposeMultNumeric,A,B,0,0);CHKERRQ(ierr); 197269f65d41SStefano Zampini ierr = MatMatTransposeMultNumeric_SeqDense_SeqDense(A,B,*C);CHKERRQ(ierr); 197369f65d41SStefano Zampini ierr = PetscLogEventEnd(MAT_MatTransposeMultNumeric,A,B,0,0);CHKERRQ(ierr); 197469f65d41SStefano Zampini PetscFunctionReturn(0); 197569f65d41SStefano Zampini } 197669f65d41SStefano Zampini 197769f65d41SStefano Zampini PetscErrorCode MatMatTransposeMultSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat *C) 197869f65d41SStefano Zampini { 197969f65d41SStefano Zampini PetscErrorCode ierr; 198069f65d41SStefano Zampini PetscInt m=A->rmap->n,n=B->rmap->n; 198169f65d41SStefano Zampini Mat Cmat; 198269f65d41SStefano Zampini 198369f65d41SStefano Zampini PetscFunctionBegin; 198469f65d41SStefano Zampini if (A->cmap->n != B->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"A->cmap->n %d != B->cmap->n %d\n",A->cmap->n,B->cmap->n); 198569f65d41SStefano Zampini ierr = MatCreate(PETSC_COMM_SELF,&Cmat);CHKERRQ(ierr); 198669f65d41SStefano Zampini ierr = MatSetSizes(Cmat,m,n,m,n);CHKERRQ(ierr); 198769f65d41SStefano Zampini ierr = MatSetType(Cmat,MATSEQDENSE);CHKERRQ(ierr); 198869f65d41SStefano Zampini ierr = MatSeqDenseSetPreallocation(Cmat,NULL);CHKERRQ(ierr); 198969f65d41SStefano Zampini 199069f65d41SStefano Zampini Cmat->assembled = PETSC_TRUE; 199169f65d41SStefano Zampini 199269f65d41SStefano Zampini *C = Cmat; 199369f65d41SStefano Zampini PetscFunctionReturn(0); 199469f65d41SStefano Zampini } 199569f65d41SStefano Zampini 199669f65d41SStefano Zampini PetscErrorCode MatMatTransposeMultNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C) 199769f65d41SStefano Zampini { 199869f65d41SStefano Zampini Mat_SeqDense *a = (Mat_SeqDense*)A->data; 199969f65d41SStefano Zampini Mat_SeqDense *b = (Mat_SeqDense*)B->data; 200069f65d41SStefano Zampini Mat_SeqDense *c = (Mat_SeqDense*)C->data; 200169f65d41SStefano Zampini PetscBLASInt m,n,k; 200269f65d41SStefano Zampini PetscScalar _DOne=1.0,_DZero=0.0; 200369f65d41SStefano Zampini PetscErrorCode ierr; 200469f65d41SStefano Zampini 200569f65d41SStefano Zampini PetscFunctionBegin; 200669f65d41SStefano Zampini ierr = PetscBLASIntCast(A->rmap->n,&m);CHKERRQ(ierr); 200769f65d41SStefano Zampini ierr = PetscBLASIntCast(B->rmap->n,&n);CHKERRQ(ierr); 200869f65d41SStefano Zampini ierr = PetscBLASIntCast(A->cmap->n,&k);CHKERRQ(ierr); 200969f65d41SStefano Zampini PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&m,&n,&k,&_DOne,a->v,&a->lda,b->v,&b->lda,&_DZero,c->v,&c->lda)); 201069f65d41SStefano Zampini PetscFunctionReturn(0); 201169f65d41SStefano Zampini } 201269f65d41SStefano Zampini 201375648e8dSHong Zhang PetscErrorCode MatTransposeMatMult_SeqDense_SeqDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 2014a9fe9ddaSSatish Balay { 2015a9fe9ddaSSatish Balay PetscErrorCode ierr; 2016a9fe9ddaSSatish Balay 2017a9fe9ddaSSatish Balay PetscFunctionBegin; 2018a9fe9ddaSSatish Balay if (scall == MAT_INITIAL_MATRIX) { 20193ff4c91cSHong Zhang ierr = PetscLogEventBegin(MAT_TransposeMatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 202075648e8dSHong Zhang ierr = MatTransposeMatMultSymbolic_SeqDense_SeqDense(A,B,fill,C);CHKERRQ(ierr); 20213ff4c91cSHong Zhang ierr = PetscLogEventEnd(MAT_TransposeMatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 2022a9fe9ddaSSatish Balay } 20233ff4c91cSHong Zhang ierr = PetscLogEventBegin(MAT_TransposeMatMultNumeric,A,B,0,0);CHKERRQ(ierr); 202475648e8dSHong Zhang ierr = MatTransposeMatMultNumeric_SeqDense_SeqDense(A,B,*C);CHKERRQ(ierr); 20253ff4c91cSHong Zhang ierr = PetscLogEventEnd(MAT_TransposeMatMultNumeric,A,B,0,0);CHKERRQ(ierr); 2026a9fe9ddaSSatish Balay PetscFunctionReturn(0); 2027a9fe9ddaSSatish Balay } 2028a9fe9ddaSSatish Balay 202975648e8dSHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat *C) 2030a9fe9ddaSSatish Balay { 2031ee16a9a1SHong Zhang PetscErrorCode ierr; 2032d0f46423SBarry Smith PetscInt m=A->cmap->n,n=B->cmap->n; 2033ee16a9a1SHong Zhang Mat Cmat; 2034a9fe9ddaSSatish Balay 2035ee16a9a1SHong Zhang PetscFunctionBegin; 2036e32f2f54SBarry Smith if (A->rmap->n != B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"A->rmap->n %d != B->rmap->n %d\n",A->rmap->n,B->rmap->n); 2037ee16a9a1SHong Zhang ierr = MatCreate(PETSC_COMM_SELF,&Cmat);CHKERRQ(ierr); 2038ee16a9a1SHong Zhang ierr = MatSetSizes(Cmat,m,n,m,n);CHKERRQ(ierr); 2039ee16a9a1SHong Zhang ierr = MatSetType(Cmat,MATSEQDENSE);CHKERRQ(ierr); 20400298fd71SBarry Smith ierr = MatSeqDenseSetPreallocation(Cmat,NULL);CHKERRQ(ierr); 20412205254eSKarl Rupp 2042ee16a9a1SHong Zhang Cmat->assembled = PETSC_TRUE; 20432205254eSKarl Rupp 2044ee16a9a1SHong Zhang *C = Cmat; 2045ee16a9a1SHong Zhang PetscFunctionReturn(0); 2046ee16a9a1SHong Zhang } 2047a9fe9ddaSSatish Balay 204875648e8dSHong Zhang PetscErrorCode MatTransposeMatMultNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C) 2049a9fe9ddaSSatish Balay { 2050a9fe9ddaSSatish Balay Mat_SeqDense *a = (Mat_SeqDense*)A->data; 2051a9fe9ddaSSatish Balay Mat_SeqDense *b = (Mat_SeqDense*)B->data; 2052a9fe9ddaSSatish Balay Mat_SeqDense *c = (Mat_SeqDense*)C->data; 20530805154bSBarry Smith PetscBLASInt m,n,k; 2054a9fe9ddaSSatish Balay PetscScalar _DOne=1.0,_DZero=0.0; 2055c5df96a5SBarry Smith PetscErrorCode ierr; 2056a9fe9ddaSSatish Balay 2057a9fe9ddaSSatish Balay PetscFunctionBegin; 20588208b9aeSStefano Zampini ierr = PetscBLASIntCast(C->rmap->n,&m);CHKERRQ(ierr); 20598208b9aeSStefano Zampini ierr = PetscBLASIntCast(C->cmap->n,&n);CHKERRQ(ierr); 2060c5df96a5SBarry Smith ierr = PetscBLASIntCast(A->rmap->n,&k);CHKERRQ(ierr); 20615ca1cc5dSStefano Zampini PetscStackCallBLAS("BLASgemm",BLASgemm_("T","N",&m,&n,&k,&_DOne,a->v,&a->lda,b->v,&b->lda,&_DZero,c->v,&c->lda)); 2062a9fe9ddaSSatish Balay PetscFunctionReturn(0); 2063a9fe9ddaSSatish Balay } 2064985db425SBarry Smith 2065e0877f53SBarry Smith static PetscErrorCode MatGetRowMax_SeqDense(Mat A,Vec v,PetscInt idx[]) 2066985db425SBarry Smith { 2067985db425SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 2068985db425SBarry Smith PetscErrorCode ierr; 2069d0f46423SBarry Smith PetscInt i,j,m = A->rmap->n,n = A->cmap->n,p; 2070985db425SBarry Smith PetscScalar *x; 2071985db425SBarry Smith MatScalar *aa = a->v; 2072985db425SBarry Smith 2073985db425SBarry Smith PetscFunctionBegin; 2074e32f2f54SBarry Smith if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 2075985db425SBarry Smith 2076985db425SBarry Smith ierr = VecSet(v,0.0);CHKERRQ(ierr); 2077985db425SBarry Smith ierr = VecGetArray(v,&x);CHKERRQ(ierr); 2078985db425SBarry Smith ierr = VecGetLocalSize(v,&p);CHKERRQ(ierr); 2079e32f2f54SBarry Smith if (p != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector"); 2080985db425SBarry Smith for (i=0; i<m; i++) { 2081985db425SBarry Smith x[i] = aa[i]; if (idx) idx[i] = 0; 2082985db425SBarry Smith for (j=1; j<n; j++) { 2083985db425SBarry Smith if (PetscRealPart(x[i]) < PetscRealPart(aa[i+m*j])) {x[i] = aa[i + m*j]; if (idx) idx[i] = j;} 2084985db425SBarry Smith } 2085985db425SBarry Smith } 2086985db425SBarry Smith ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 2087985db425SBarry Smith PetscFunctionReturn(0); 2088985db425SBarry Smith } 2089985db425SBarry Smith 2090e0877f53SBarry Smith static PetscErrorCode MatGetRowMaxAbs_SeqDense(Mat A,Vec v,PetscInt idx[]) 2091985db425SBarry Smith { 2092985db425SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 2093985db425SBarry Smith PetscErrorCode ierr; 2094d0f46423SBarry Smith PetscInt i,j,m = A->rmap->n,n = A->cmap->n,p; 2095985db425SBarry Smith PetscScalar *x; 2096985db425SBarry Smith PetscReal atmp; 2097985db425SBarry Smith MatScalar *aa = a->v; 2098985db425SBarry Smith 2099985db425SBarry Smith PetscFunctionBegin; 2100e32f2f54SBarry Smith if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 2101985db425SBarry Smith 2102985db425SBarry Smith ierr = VecSet(v,0.0);CHKERRQ(ierr); 2103985db425SBarry Smith ierr = VecGetArray(v,&x);CHKERRQ(ierr); 2104985db425SBarry Smith ierr = VecGetLocalSize(v,&p);CHKERRQ(ierr); 2105e32f2f54SBarry Smith if (p != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector"); 2106985db425SBarry Smith for (i=0; i<m; i++) { 21079189402eSHong Zhang x[i] = PetscAbsScalar(aa[i]); 2108985db425SBarry Smith for (j=1; j<n; j++) { 2109985db425SBarry Smith atmp = PetscAbsScalar(aa[i+m*j]); 2110985db425SBarry Smith if (PetscAbsScalar(x[i]) < atmp) {x[i] = atmp; if (idx) idx[i] = j;} 2111985db425SBarry Smith } 2112985db425SBarry Smith } 2113985db425SBarry Smith ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 2114985db425SBarry Smith PetscFunctionReturn(0); 2115985db425SBarry Smith } 2116985db425SBarry Smith 2117e0877f53SBarry Smith static PetscErrorCode MatGetRowMin_SeqDense(Mat A,Vec v,PetscInt idx[]) 2118985db425SBarry Smith { 2119985db425SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 2120985db425SBarry Smith PetscErrorCode ierr; 2121d0f46423SBarry Smith PetscInt i,j,m = A->rmap->n,n = A->cmap->n,p; 2122985db425SBarry Smith PetscScalar *x; 2123985db425SBarry Smith MatScalar *aa = a->v; 2124985db425SBarry Smith 2125985db425SBarry Smith PetscFunctionBegin; 2126e32f2f54SBarry Smith if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 2127985db425SBarry Smith 2128985db425SBarry Smith ierr = VecSet(v,0.0);CHKERRQ(ierr); 2129985db425SBarry Smith ierr = VecGetArray(v,&x);CHKERRQ(ierr); 2130985db425SBarry Smith ierr = VecGetLocalSize(v,&p);CHKERRQ(ierr); 2131e32f2f54SBarry Smith if (p != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector"); 2132985db425SBarry Smith for (i=0; i<m; i++) { 2133985db425SBarry Smith x[i] = aa[i]; if (idx) idx[i] = 0; 2134985db425SBarry Smith for (j=1; j<n; j++) { 2135985db425SBarry Smith if (PetscRealPart(x[i]) > PetscRealPart(aa[i+m*j])) {x[i] = aa[i + m*j]; if (idx) idx[i] = j;} 2136985db425SBarry Smith } 2137985db425SBarry Smith } 2138985db425SBarry Smith ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 2139985db425SBarry Smith PetscFunctionReturn(0); 2140985db425SBarry Smith } 2141985db425SBarry Smith 2142e0877f53SBarry Smith static PetscErrorCode MatGetColumnVector_SeqDense(Mat A,Vec v,PetscInt col) 21438d0534beSBarry Smith { 21448d0534beSBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 21458d0534beSBarry Smith PetscErrorCode ierr; 21468d0534beSBarry Smith PetscScalar *x; 21478d0534beSBarry Smith 21488d0534beSBarry Smith PetscFunctionBegin; 2149e32f2f54SBarry Smith if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 21508d0534beSBarry Smith 21518d0534beSBarry Smith ierr = VecGetArray(v,&x);CHKERRQ(ierr); 2152d0f46423SBarry Smith ierr = PetscMemcpy(x,a->v+col*a->lda,A->rmap->n*sizeof(PetscScalar));CHKERRQ(ierr); 21538d0534beSBarry Smith ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 21548d0534beSBarry Smith PetscFunctionReturn(0); 21558d0534beSBarry Smith } 21568d0534beSBarry Smith 21570716a85fSBarry Smith 21580716a85fSBarry Smith PetscErrorCode MatGetColumnNorms_SeqDense(Mat A,NormType type,PetscReal *norms) 21590716a85fSBarry Smith { 21600716a85fSBarry Smith PetscErrorCode ierr; 21610716a85fSBarry Smith PetscInt i,j,m,n; 21620716a85fSBarry Smith PetscScalar *a; 21630716a85fSBarry Smith 21640716a85fSBarry Smith PetscFunctionBegin; 21650716a85fSBarry Smith ierr = MatGetSize(A,&m,&n);CHKERRQ(ierr); 21660716a85fSBarry Smith ierr = PetscMemzero(norms,n*sizeof(PetscReal));CHKERRQ(ierr); 21678c778c55SBarry Smith ierr = MatDenseGetArray(A,&a);CHKERRQ(ierr); 21680716a85fSBarry Smith if (type == NORM_2) { 21690716a85fSBarry Smith for (i=0; i<n; i++) { 21700716a85fSBarry Smith for (j=0; j<m; j++) { 21710716a85fSBarry Smith norms[i] += PetscAbsScalar(a[j]*a[j]); 21720716a85fSBarry Smith } 21730716a85fSBarry Smith a += m; 21740716a85fSBarry Smith } 21750716a85fSBarry Smith } else if (type == NORM_1) { 21760716a85fSBarry Smith for (i=0; i<n; i++) { 21770716a85fSBarry Smith for (j=0; j<m; j++) { 21780716a85fSBarry Smith norms[i] += PetscAbsScalar(a[j]); 21790716a85fSBarry Smith } 21800716a85fSBarry Smith a += m; 21810716a85fSBarry Smith } 21820716a85fSBarry Smith } else if (type == NORM_INFINITY) { 21830716a85fSBarry Smith for (i=0; i<n; i++) { 21840716a85fSBarry Smith for (j=0; j<m; j++) { 21850716a85fSBarry Smith norms[i] = PetscMax(PetscAbsScalar(a[j]),norms[i]); 21860716a85fSBarry Smith } 21870716a85fSBarry Smith a += m; 21880716a85fSBarry Smith } 2189ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Unknown NormType"); 21908c778c55SBarry Smith ierr = MatDenseRestoreArray(A,&a);CHKERRQ(ierr); 21910716a85fSBarry Smith if (type == NORM_2) { 21928f1a2a5eSBarry Smith for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]); 21930716a85fSBarry Smith } 21940716a85fSBarry Smith PetscFunctionReturn(0); 21950716a85fSBarry Smith } 21960716a85fSBarry Smith 219773a71a0fSBarry Smith static PetscErrorCode MatSetRandom_SeqDense(Mat x,PetscRandom rctx) 219873a71a0fSBarry Smith { 219973a71a0fSBarry Smith PetscErrorCode ierr; 220073a71a0fSBarry Smith PetscScalar *a; 220173a71a0fSBarry Smith PetscInt m,n,i; 220273a71a0fSBarry Smith 220373a71a0fSBarry Smith PetscFunctionBegin; 220473a71a0fSBarry Smith ierr = MatGetSize(x,&m,&n);CHKERRQ(ierr); 22058c778c55SBarry Smith ierr = MatDenseGetArray(x,&a);CHKERRQ(ierr); 220673a71a0fSBarry Smith for (i=0; i<m*n; i++) { 220773a71a0fSBarry Smith ierr = PetscRandomGetValue(rctx,a+i);CHKERRQ(ierr); 220873a71a0fSBarry Smith } 22098c778c55SBarry Smith ierr = MatDenseRestoreArray(x,&a);CHKERRQ(ierr); 221073a71a0fSBarry Smith PetscFunctionReturn(0); 221173a71a0fSBarry Smith } 221273a71a0fSBarry Smith 22133b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_SeqDense(Mat A,PetscBool *missing,PetscInt *d) 22143b49f96aSBarry Smith { 22153b49f96aSBarry Smith PetscFunctionBegin; 22163b49f96aSBarry Smith *missing = PETSC_FALSE; 22173b49f96aSBarry Smith PetscFunctionReturn(0); 22183b49f96aSBarry Smith } 221973a71a0fSBarry Smith 2220abc3b08eSStefano Zampini 2221289bc588SBarry Smith /* -------------------------------------------------------------------*/ 2222a5ae1ecdSBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_SeqDense, 2223905e6a2fSBarry Smith MatGetRow_SeqDense, 2224905e6a2fSBarry Smith MatRestoreRow_SeqDense, 2225905e6a2fSBarry Smith MatMult_SeqDense, 222697304618SKris Buschelman /* 4*/ MatMultAdd_SeqDense, 22277c922b88SBarry Smith MatMultTranspose_SeqDense, 22287c922b88SBarry Smith MatMultTransposeAdd_SeqDense, 2229db4efbfdSBarry Smith 0, 2230db4efbfdSBarry Smith 0, 2231db4efbfdSBarry Smith 0, 2232db4efbfdSBarry Smith /* 10*/ 0, 2233905e6a2fSBarry Smith MatLUFactor_SeqDense, 2234905e6a2fSBarry Smith MatCholeskyFactor_SeqDense, 223541f059aeSBarry Smith MatSOR_SeqDense, 2236ec8511deSBarry Smith MatTranspose_SeqDense, 223797304618SKris Buschelman /* 15*/ MatGetInfo_SeqDense, 2238905e6a2fSBarry Smith MatEqual_SeqDense, 2239905e6a2fSBarry Smith MatGetDiagonal_SeqDense, 2240905e6a2fSBarry Smith MatDiagonalScale_SeqDense, 2241905e6a2fSBarry Smith MatNorm_SeqDense, 2242c0aa2d19SHong Zhang /* 20*/ MatAssemblyBegin_SeqDense, 2243c0aa2d19SHong Zhang MatAssemblyEnd_SeqDense, 2244905e6a2fSBarry Smith MatSetOption_SeqDense, 2245905e6a2fSBarry Smith MatZeroEntries_SeqDense, 2246d519adbfSMatthew Knepley /* 24*/ MatZeroRows_SeqDense, 2247db4efbfdSBarry Smith 0, 2248db4efbfdSBarry Smith 0, 2249db4efbfdSBarry Smith 0, 2250db4efbfdSBarry Smith 0, 22514994cf47SJed Brown /* 29*/ MatSetUp_SeqDense, 2252273d9f13SBarry Smith 0, 2253905e6a2fSBarry Smith 0, 225473a71a0fSBarry Smith 0, 225573a71a0fSBarry Smith 0, 2256d519adbfSMatthew Knepley /* 34*/ MatDuplicate_SeqDense, 2257a5ae1ecdSBarry Smith 0, 2258a5ae1ecdSBarry Smith 0, 2259a5ae1ecdSBarry Smith 0, 2260a5ae1ecdSBarry Smith 0, 2261d519adbfSMatthew Knepley /* 39*/ MatAXPY_SeqDense, 22627dae84e0SHong Zhang MatCreateSubMatrices_SeqDense, 2263a5ae1ecdSBarry Smith 0, 22644b0e389bSBarry Smith MatGetValues_SeqDense, 2265a5ae1ecdSBarry Smith MatCopy_SeqDense, 2266d519adbfSMatthew Knepley /* 44*/ MatGetRowMax_SeqDense, 2267a5ae1ecdSBarry Smith MatScale_SeqDense, 22687d68702bSBarry Smith MatShift_Basic, 2269a5ae1ecdSBarry Smith 0, 22703f49a652SStefano Zampini MatZeroRowsColumns_SeqDense, 227173a71a0fSBarry Smith /* 49*/ MatSetRandom_SeqDense, 2272a5ae1ecdSBarry Smith 0, 2273a5ae1ecdSBarry Smith 0, 2274a5ae1ecdSBarry Smith 0, 2275a5ae1ecdSBarry Smith 0, 2276d519adbfSMatthew Knepley /* 54*/ 0, 2277a5ae1ecdSBarry Smith 0, 2278a5ae1ecdSBarry Smith 0, 2279a5ae1ecdSBarry Smith 0, 2280a5ae1ecdSBarry Smith 0, 2281d519adbfSMatthew Knepley /* 59*/ 0, 2282e03a110bSBarry Smith MatDestroy_SeqDense, 2283e03a110bSBarry Smith MatView_SeqDense, 2284357abbc8SBarry Smith 0, 228597304618SKris Buschelman 0, 2286d519adbfSMatthew Knepley /* 64*/ 0, 228797304618SKris Buschelman 0, 228897304618SKris Buschelman 0, 228997304618SKris Buschelman 0, 229097304618SKris Buschelman 0, 2291d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_SeqDense, 229297304618SKris Buschelman 0, 229397304618SKris Buschelman 0, 229497304618SKris Buschelman 0, 229597304618SKris Buschelman 0, 2296d519adbfSMatthew Knepley /* 74*/ 0, 229797304618SKris Buschelman 0, 229897304618SKris Buschelman 0, 229997304618SKris Buschelman 0, 230097304618SKris Buschelman 0, 2301d519adbfSMatthew Knepley /* 79*/ 0, 230297304618SKris Buschelman 0, 230397304618SKris Buschelman 0, 230497304618SKris Buschelman 0, 23055bba2384SShri Abhyankar /* 83*/ MatLoad_SeqDense, 2306865e5f61SKris Buschelman 0, 23071cbb95d3SBarry Smith MatIsHermitian_SeqDense, 2308865e5f61SKris Buschelman 0, 2309865e5f61SKris Buschelman 0, 2310865e5f61SKris Buschelman 0, 2311d519adbfSMatthew Knepley /* 89*/ MatMatMult_SeqDense_SeqDense, 2312a9fe9ddaSSatish Balay MatMatMultSymbolic_SeqDense_SeqDense, 2313a9fe9ddaSSatish Balay MatMatMultNumeric_SeqDense_SeqDense, 2314abc3b08eSStefano Zampini MatPtAP_SeqDense_SeqDense, 2315abc3b08eSStefano Zampini MatPtAPSymbolic_SeqDense_SeqDense, 2316abc3b08eSStefano Zampini /* 94*/ MatPtAPNumeric_SeqDense_SeqDense, 231769f65d41SStefano Zampini MatMatTransposeMult_SeqDense_SeqDense, 231869f65d41SStefano Zampini MatMatTransposeMultSymbolic_SeqDense_SeqDense, 231969f65d41SStefano Zampini MatMatTransposeMultNumeric_SeqDense_SeqDense, 2320284134d9SBarry Smith 0, 2321d519adbfSMatthew Knepley /* 99*/ 0, 2322284134d9SBarry Smith 0, 2323284134d9SBarry Smith 0, 2324ba337c44SJed Brown MatConjugate_SeqDense, 2325f73d5cc4SBarry Smith 0, 2326ba337c44SJed Brown /*104*/ 0, 2327ba337c44SJed Brown MatRealPart_SeqDense, 2328ba337c44SJed Brown MatImaginaryPart_SeqDense, 2329985db425SBarry Smith 0, 2330985db425SBarry Smith 0, 23318208b9aeSStefano Zampini /*109*/ 0, 2332985db425SBarry Smith 0, 23338d0534beSBarry Smith MatGetRowMin_SeqDense, 2334aabbc4fbSShri Abhyankar MatGetColumnVector_SeqDense, 23353b49f96aSBarry Smith MatMissingDiagonal_SeqDense, 2336aabbc4fbSShri Abhyankar /*114*/ 0, 2337aabbc4fbSShri Abhyankar 0, 2338aabbc4fbSShri Abhyankar 0, 2339aabbc4fbSShri Abhyankar 0, 2340aabbc4fbSShri Abhyankar 0, 2341aabbc4fbSShri Abhyankar /*119*/ 0, 2342aabbc4fbSShri Abhyankar 0, 2343aabbc4fbSShri Abhyankar 0, 23440716a85fSBarry Smith 0, 23450716a85fSBarry Smith 0, 23460716a85fSBarry Smith /*124*/ 0, 23475df89d91SHong Zhang MatGetColumnNorms_SeqDense, 23485df89d91SHong Zhang 0, 23495df89d91SHong Zhang 0, 23505df89d91SHong Zhang 0, 23515df89d91SHong Zhang /*129*/ 0, 235275648e8dSHong Zhang MatTransposeMatMult_SeqDense_SeqDense, 235375648e8dSHong Zhang MatTransposeMatMultSymbolic_SeqDense_SeqDense, 235475648e8dSHong Zhang MatTransposeMatMultNumeric_SeqDense_SeqDense, 23553964eb88SJed Brown 0, 23563964eb88SJed Brown /*134*/ 0, 23573964eb88SJed Brown 0, 23583964eb88SJed Brown 0, 23593964eb88SJed Brown 0, 23603964eb88SJed Brown 0, 23613964eb88SJed Brown /*139*/ 0, 2362f9426fe0SMark Adams 0, 23633964eb88SJed Brown 0 2364985db425SBarry Smith }; 236590ace30eSBarry Smith 23664b828684SBarry Smith /*@C 2367fafbff53SBarry Smith MatCreateSeqDense - Creates a sequential dense matrix that 2368d65003e9SLois Curfman McInnes is stored in column major order (the usual Fortran 77 manner). Many 2369d65003e9SLois Curfman McInnes of the matrix operations use the BLAS and LAPACK routines. 2370289bc588SBarry Smith 2371db81eaa0SLois Curfman McInnes Collective on MPI_Comm 2372db81eaa0SLois Curfman McInnes 237320563c6bSBarry Smith Input Parameters: 2374db81eaa0SLois Curfman McInnes + comm - MPI communicator, set to PETSC_COMM_SELF 23750c775827SLois Curfman McInnes . m - number of rows 237618f449edSLois Curfman McInnes . n - number of columns 23770298fd71SBarry Smith - data - optional location of matrix data in column major order. Set data=NULL for PETSc 2378dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 237920563c6bSBarry Smith 238020563c6bSBarry Smith Output Parameter: 238144cd7ae7SLois Curfman McInnes . A - the matrix 238220563c6bSBarry Smith 2383b259b22eSLois Curfman McInnes Notes: 238418f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 238518f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 23860298fd71SBarry Smith set data=NULL. 238718f449edSLois Curfman McInnes 2388027ccd11SLois Curfman McInnes Level: intermediate 2389027ccd11SLois Curfman McInnes 2390dbd7a890SLois Curfman McInnes .keywords: dense, matrix, LAPACK, BLAS 2391d65003e9SLois Curfman McInnes 239269b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateDense(), MatSetValues() 239320563c6bSBarry Smith @*/ 23947087cfbeSBarry Smith PetscErrorCode MatCreateSeqDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscScalar *data,Mat *A) 2395289bc588SBarry Smith { 2396dfbe8321SBarry Smith PetscErrorCode ierr; 23973b2fbd54SBarry Smith 23983a40ed3dSBarry Smith PetscFunctionBegin; 2399f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2400f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr); 2401273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 2402273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 2403273d9f13SBarry Smith PetscFunctionReturn(0); 2404273d9f13SBarry Smith } 2405273d9f13SBarry Smith 2406273d9f13SBarry Smith /*@C 2407273d9f13SBarry Smith MatSeqDenseSetPreallocation - Sets the array used for storing the matrix elements 2408273d9f13SBarry Smith 2409273d9f13SBarry Smith Collective on MPI_Comm 2410273d9f13SBarry Smith 2411273d9f13SBarry Smith Input Parameters: 24121c4f3114SJed Brown + B - the matrix 24130298fd71SBarry Smith - data - the array (or NULL) 2414273d9f13SBarry Smith 2415273d9f13SBarry Smith Notes: 2416273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 2417273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 2418284134d9SBarry Smith need not call this routine. 2419273d9f13SBarry Smith 2420273d9f13SBarry Smith Level: intermediate 2421273d9f13SBarry Smith 2422273d9f13SBarry Smith .keywords: dense, matrix, LAPACK, BLAS 2423273d9f13SBarry Smith 242469b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateDense(), MatSetValues(), MatSeqDenseSetLDA() 2425867c911aSBarry Smith 2426273d9f13SBarry Smith @*/ 24277087cfbeSBarry Smith PetscErrorCode MatSeqDenseSetPreallocation(Mat B,PetscScalar data[]) 2428273d9f13SBarry Smith { 24294ac538c5SBarry Smith PetscErrorCode ierr; 2430a23d5eceSKris Buschelman 2431a23d5eceSKris Buschelman PetscFunctionBegin; 24324ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatSeqDenseSetPreallocation_C",(Mat,PetscScalar[]),(B,data));CHKERRQ(ierr); 2433a23d5eceSKris Buschelman PetscFunctionReturn(0); 2434a23d5eceSKris Buschelman } 2435a23d5eceSKris Buschelman 24367087cfbeSBarry Smith PetscErrorCode MatSeqDenseSetPreallocation_SeqDense(Mat B,PetscScalar *data) 2437a23d5eceSKris Buschelman { 2438273d9f13SBarry Smith Mat_SeqDense *b; 2439dfbe8321SBarry Smith PetscErrorCode ierr; 2440273d9f13SBarry Smith 2441273d9f13SBarry Smith PetscFunctionBegin; 2442273d9f13SBarry Smith B->preallocated = PETSC_TRUE; 2443a868139aSShri Abhyankar 244434ef9618SShri Abhyankar ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 244534ef9618SShri Abhyankar ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 244634ef9618SShri Abhyankar 2447273d9f13SBarry Smith b = (Mat_SeqDense*)B->data; 244886d161a7SShri Abhyankar b->Mmax = B->rmap->n; 244986d161a7SShri Abhyankar b->Nmax = B->cmap->n; 245086d161a7SShri Abhyankar if (b->lda <= 0 || b->changelda) b->lda = B->rmap->n; 245186d161a7SShri Abhyankar 2452220afb94SBarry Smith ierr = PetscIntMultError(b->lda,b->Nmax,NULL);CHKERRQ(ierr); 24539e8f95c4SLisandro Dalcin if (!data) { /* petsc-allocated storage */ 24549e8f95c4SLisandro Dalcin if (!b->user_alloc) { ierr = PetscFree(b->v);CHKERRQ(ierr); } 2455e92229d0SSatish Balay ierr = PetscCalloc1((size_t)b->lda*b->Nmax,&b->v);CHKERRQ(ierr); 24563bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)B,b->lda*b->Nmax*sizeof(PetscScalar));CHKERRQ(ierr); 24572205254eSKarl Rupp 24589e8f95c4SLisandro Dalcin b->user_alloc = PETSC_FALSE; 2459273d9f13SBarry Smith } else { /* user-allocated storage */ 24609e8f95c4SLisandro Dalcin if (!b->user_alloc) { ierr = PetscFree(b->v);CHKERRQ(ierr); } 2461273d9f13SBarry Smith b->v = data; 2462273d9f13SBarry Smith b->user_alloc = PETSC_TRUE; 2463273d9f13SBarry Smith } 24640450473dSBarry Smith B->assembled = PETSC_TRUE; 2465273d9f13SBarry Smith PetscFunctionReturn(0); 2466273d9f13SBarry Smith } 2467273d9f13SBarry Smith 246865b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2469cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 24708baccfbdSHong Zhang { 2471d77f618aSHong Zhang Mat mat_elemental; 2472d77f618aSHong Zhang PetscErrorCode ierr; 2473d77f618aSHong Zhang PetscScalar *array,*v_colwise; 2474d77f618aSHong Zhang PetscInt M=A->rmap->N,N=A->cmap->N,i,j,k,*rows,*cols; 2475d77f618aSHong Zhang 24768baccfbdSHong Zhang PetscFunctionBegin; 2477d77f618aSHong Zhang ierr = PetscMalloc3(M*N,&v_colwise,M,&rows,N,&cols);CHKERRQ(ierr); 2478d77f618aSHong Zhang ierr = MatDenseGetArray(A,&array);CHKERRQ(ierr); 2479d77f618aSHong Zhang /* convert column-wise array into row-wise v_colwise, see MatSetValues_Elemental() */ 2480d77f618aSHong Zhang k = 0; 2481d77f618aSHong Zhang for (j=0; j<N; j++) { 2482d77f618aSHong Zhang cols[j] = j; 2483d77f618aSHong Zhang for (i=0; i<M; i++) { 2484d77f618aSHong Zhang v_colwise[j*M+i] = array[k++]; 2485d77f618aSHong Zhang } 2486d77f618aSHong Zhang } 2487d77f618aSHong Zhang for (i=0; i<M; i++) { 2488d77f618aSHong Zhang rows[i] = i; 2489d77f618aSHong Zhang } 2490d77f618aSHong Zhang ierr = MatDenseRestoreArray(A,&array);CHKERRQ(ierr); 2491d77f618aSHong Zhang 2492d77f618aSHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr); 2493d77f618aSHong Zhang ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,M,N);CHKERRQ(ierr); 2494d77f618aSHong Zhang ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr); 2495d77f618aSHong Zhang ierr = MatSetUp(mat_elemental);CHKERRQ(ierr); 2496d77f618aSHong Zhang 2497d77f618aSHong Zhang /* PETSc-Elemental interaface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 2498d77f618aSHong Zhang ierr = MatSetValues(mat_elemental,M,rows,N,cols,v_colwise,ADD_VALUES);CHKERRQ(ierr); 2499d77f618aSHong Zhang ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2500d77f618aSHong Zhang ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2501d77f618aSHong Zhang ierr = PetscFree3(v_colwise,rows,cols);CHKERRQ(ierr); 2502d77f618aSHong Zhang 2503511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 250428be2f97SBarry Smith ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr); 2505d77f618aSHong Zhang } else { 2506d77f618aSHong Zhang *newmat = mat_elemental; 2507d77f618aSHong Zhang } 25088baccfbdSHong Zhang PetscFunctionReturn(0); 25098baccfbdSHong Zhang } 251065b80a83SHong Zhang #endif 25118baccfbdSHong Zhang 25121b807ce4Svictorle /*@C 25131b807ce4Svictorle MatSeqDenseSetLDA - Declare the leading dimension of the user-provided array 25141b807ce4Svictorle 25151b807ce4Svictorle Input parameter: 25161b807ce4Svictorle + A - the matrix 25171b807ce4Svictorle - lda - the leading dimension 25181b807ce4Svictorle 25191b807ce4Svictorle Notes: 2520867c911aSBarry Smith This routine is to be used in conjunction with MatSeqDenseSetPreallocation(); 25211b807ce4Svictorle it asserts that the preallocation has a leading dimension (the LDA parameter 25221b807ce4Svictorle of Blas and Lapack fame) larger than M, the first dimension of the matrix. 25231b807ce4Svictorle 25241b807ce4Svictorle Level: intermediate 25251b807ce4Svictorle 25261b807ce4Svictorle .keywords: dense, matrix, LAPACK, BLAS 25271b807ce4Svictorle 2528284134d9SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSeqDenseSetPreallocation(), MatSetMaximumSize() 2529867c911aSBarry Smith 25301b807ce4Svictorle @*/ 25317087cfbeSBarry Smith PetscErrorCode MatSeqDenseSetLDA(Mat B,PetscInt lda) 25321b807ce4Svictorle { 25331b807ce4Svictorle Mat_SeqDense *b = (Mat_SeqDense*)B->data; 253421a2c019SBarry Smith 25351b807ce4Svictorle PetscFunctionBegin; 2536e32f2f54SBarry Smith if (lda < B->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"LDA %D must be at least matrix dimension %D",lda,B->rmap->n); 25371b807ce4Svictorle b->lda = lda; 253821a2c019SBarry Smith b->changelda = PETSC_FALSE; 253921a2c019SBarry Smith b->Mmax = PetscMax(b->Mmax,lda); 25401b807ce4Svictorle PetscFunctionReturn(0); 25411b807ce4Svictorle } 25421b807ce4Svictorle 25430bad9183SKris Buschelman /*MC 2544fafad747SKris Buschelman MATSEQDENSE - MATSEQDENSE = "seqdense" - A matrix type to be used for sequential dense matrices. 25450bad9183SKris Buschelman 25460bad9183SKris Buschelman Options Database Keys: 25470bad9183SKris Buschelman . -mat_type seqdense - sets the matrix type to "seqdense" during a call to MatSetFromOptions() 25480bad9183SKris Buschelman 25490bad9183SKris Buschelman Level: beginner 25500bad9183SKris Buschelman 255189665df3SBarry Smith .seealso: MatCreateSeqDense() 255289665df3SBarry Smith 25530bad9183SKris Buschelman M*/ 25540bad9183SKris Buschelman 25558cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_SeqDense(Mat B) 2556273d9f13SBarry Smith { 2557273d9f13SBarry Smith Mat_SeqDense *b; 2558dfbe8321SBarry Smith PetscErrorCode ierr; 25597c334f02SBarry Smith PetscMPIInt size; 2560273d9f13SBarry Smith 2561273d9f13SBarry Smith PetscFunctionBegin; 2562ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr); 2563e32f2f54SBarry Smith if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Comm must be of size 1"); 256455659b69SBarry Smith 2565b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 2566549d3d68SSatish Balay ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 256744cd7ae7SLois Curfman McInnes B->data = (void*)b; 256818f449edSLois Curfman McInnes 2569273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 25704e220ebcSLois Curfman McInnes 2571bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseGetArray_C",MatDenseGetArray_SeqDense);CHKERRQ(ierr); 2572d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatDensePlaceArray_C",MatDensePlaceArray_SeqDense);CHKERRQ(ierr); 2573d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseResetArray_C",MatDenseResetArray_SeqDense);CHKERRQ(ierr); 2574bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreArray_C",MatDenseRestoreArray_SeqDense);CHKERRQ(ierr); 2575bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqdense_seqaij_C",MatConvert_SeqDense_SeqAIJ);CHKERRQ(ierr); 25768baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 25778baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqdense_elemental_C",MatConvert_SeqDense_Elemental);CHKERRQ(ierr); 25788baccfbdSHong Zhang #endif 2579bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqDenseSetPreallocation_C",MatSeqDenseSetPreallocation_SeqDense);CHKERRQ(ierr); 2580bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMatMult_seqaij_seqdense_C",MatMatMult_SeqAIJ_SeqDense);CHKERRQ(ierr); 2581bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMatMultSymbolic_seqaij_seqdense_C",MatMatMultSymbolic_SeqAIJ_SeqDense);CHKERRQ(ierr); 2582bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMatMultNumeric_seqaij_seqdense_C",MatMatMultNumeric_SeqAIJ_SeqDense);CHKERRQ(ierr); 2583abc3b08eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatPtAP_seqaij_seqdense_C",MatPtAP_SeqDense_SeqDense);CHKERRQ(ierr); 25844099cc6bSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMatMult_seqaijperm_seqdense_C",MatMatMult_SeqAIJ_SeqDense);CHKERRQ(ierr); 25854099cc6bSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMatMultSymbolic_seqaijperm_seqdense_C",MatMatMultSymbolic_SeqAIJ_SeqDense);CHKERRQ(ierr); 25864099cc6bSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMatMultNumeric_seqaijperm_seqdense_C",MatMatMultNumeric_SeqAIJ_SeqDense);CHKERRQ(ierr); 25874099cc6bSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatPtAP_seqaijperm_seqdense_C",MatPtAP_SeqDense_SeqDense);CHKERRQ(ierr); 258896e6d5c4SRichard Tran Mills ierr = PetscObjectComposeFunction((PetscObject)B,"MatMatMult_seqaijmkl_seqdense_C",MatMatMult_SeqAIJ_SeqDense);CHKERRQ(ierr); 258996e6d5c4SRichard Tran Mills ierr = PetscObjectComposeFunction((PetscObject)B,"MatMatMultSymbolic_seqaijmkl_seqdense_C",MatMatMultSymbolic_SeqAIJ_SeqDense);CHKERRQ(ierr); 259096e6d5c4SRichard Tran Mills ierr = PetscObjectComposeFunction((PetscObject)B,"MatMatMultNumeric_seqaijmkl_seqdense_C",MatMatMultNumeric_SeqAIJ_SeqDense);CHKERRQ(ierr); 259196e6d5c4SRichard Tran Mills ierr = PetscObjectComposeFunction((PetscObject)B,"MatPtAP_seqaijmkl_seqdense_C",MatPtAP_SeqDense_SeqDense);CHKERRQ(ierr); 259296e6d5c4SRichard Tran Mills 25933bf78175SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatTransposeMatMult_seqaij_seqdense_C",MatTransposeMatMult_SeqAIJ_SeqDense);CHKERRQ(ierr); 25943bf78175SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatTransposeMatMultSymbolic_seqaij_seqdense_C",MatTransposeMatMultSymbolic_SeqAIJ_SeqDense);CHKERRQ(ierr); 25953bf78175SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatTransposeMatMultNumeric_seqaij_seqdense_C",MatTransposeMatMultNumeric_SeqAIJ_SeqDense);CHKERRQ(ierr); 25964099cc6bSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatTransposeMatMult_seqaijperm_seqdense_C",MatTransposeMatMult_SeqAIJ_SeqDense);CHKERRQ(ierr); 25974099cc6bSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatTransposeMatMultSymbolic_seqaijperm_seqdense_C",MatTransposeMatMultSymbolic_SeqAIJ_SeqDense);CHKERRQ(ierr); 25984099cc6bSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatTransposeMatMultNumeric_seqaijperm_seqdense_C",MatTransposeMatMultNumeric_SeqAIJ_SeqDense);CHKERRQ(ierr); 259996e6d5c4SRichard Tran Mills 260096e6d5c4SRichard Tran Mills ierr = PetscObjectComposeFunction((PetscObject)B,"MatTransposeMatMult_seqaijmkl_seqdense_C",MatTransposeMatMult_SeqAIJ_SeqDense);CHKERRQ(ierr); 260196e6d5c4SRichard Tran Mills ierr = PetscObjectComposeFunction((PetscObject)B,"MatTransposeMatMultSymbolic_seqaijmkl_seqdense_C",MatTransposeMatMultSymbolic_SeqAIJ_SeqDense);CHKERRQ(ierr); 260296e6d5c4SRichard Tran Mills ierr = PetscObjectComposeFunction((PetscObject)B,"MatTransposeMatMultNumeric_seqaijmkl_seqdense_C",MatTransposeMatMultNumeric_SeqAIJ_SeqDense);CHKERRQ(ierr); 260317667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQDENSE);CHKERRQ(ierr); 26043a40ed3dSBarry Smith PetscFunctionReturn(0); 2605289bc588SBarry Smith } 2606