xref: /petsc/src/mat/impls/dense/seq/dense.c (revision 7c334f0243eb3f00fc22f2f6efb0b24b1906cf86)
167e560aaSBarry Smith /*
267e560aaSBarry Smith      Defines the basic matrix operations for sequential dense.
367e560aaSBarry Smith */
4289bc588SBarry Smith 
570f55243SBarry Smith #include "src/mat/impls/dense/seq/dense.h"
6b4c862e0SSatish Balay #include "petscblaslapack.h"
7289bc588SBarry Smith 
84a2ae208SSatish Balay #undef __FUNCT__
94a2ae208SSatish Balay #define __FUNCT__ "MatAXPY_SeqDense"
10dfbe8321SBarry Smith PetscErrorCode MatAXPY_SeqDense(const PetscScalar *alpha,Mat X,Mat Y,MatStructure str)
111987afe7SBarry Smith {
121987afe7SBarry Smith   Mat_SeqDense *x = (Mat_SeqDense*)X->data,*y = (Mat_SeqDense*)Y->data;
134ce68768SBarry Smith   int          j;
144ce68768SBarry Smith   PetscBLASInt N = (PetscBLASInt)X->m*X->n,m=(PetscBLASInt)X->m,ldax = x->lda,lday=y->lda,one = 1;
153a40ed3dSBarry Smith 
163a40ed3dSBarry Smith   PetscFunctionBegin;
17a5ce6ee0Svictorle   if (X->m != Y->m || X->n != Y->n) SETERRQ(PETSC_ERR_ARG_SIZ,"size(B) != size(A)");
18a5ce6ee0Svictorle   if (ldax>m || lday>m) {
19a5ce6ee0Svictorle     for (j=0; j<X->n; j++) {
20268466fbSBarry Smith       BLaxpy_(&m,(PetscScalar*)alpha,x->v+j*ldax,&one,y->v+j*lday,&one);
21a5ce6ee0Svictorle     }
22a5ce6ee0Svictorle   } else {
23268466fbSBarry Smith     BLaxpy_(&N,(PetscScalar*)alpha,x->v,&one,y->v,&one);
24a5ce6ee0Svictorle   }
25b0a32e0cSBarry Smith   PetscLogFlops(2*N-1);
263a40ed3dSBarry Smith   PetscFunctionReturn(0);
271987afe7SBarry Smith }
281987afe7SBarry Smith 
294a2ae208SSatish Balay #undef __FUNCT__
304a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_SeqDense"
31dfbe8321SBarry Smith PetscErrorCode MatGetInfo_SeqDense(Mat A,MatInfoType flag,MatInfo *info)
32289bc588SBarry Smith {
334e220ebcSLois Curfman McInnes   Mat_SeqDense *a = (Mat_SeqDense*)A->data;
34273d9f13SBarry Smith   int          i,N = A->m*A->n,count = 0;
3587828ca2SBarry Smith   PetscScalar  *v = a->v;
363a40ed3dSBarry Smith 
373a40ed3dSBarry Smith   PetscFunctionBegin;
38289bc588SBarry Smith   for (i=0; i<N; i++) {if (*v != 0.0) count++; v++;}
394e220ebcSLois Curfman McInnes 
40273d9f13SBarry Smith   info->rows_global       = (double)A->m;
41273d9f13SBarry Smith   info->columns_global    = (double)A->n;
42273d9f13SBarry Smith   info->rows_local        = (double)A->m;
43273d9f13SBarry Smith   info->columns_local     = (double)A->n;
444e220ebcSLois Curfman McInnes   info->block_size        = 1.0;
454e220ebcSLois Curfman McInnes   info->nz_allocated      = (double)N;
464e220ebcSLois Curfman McInnes   info->nz_used           = (double)count;
474e220ebcSLois Curfman McInnes   info->nz_unneeded       = (double)(N-count);
484e220ebcSLois Curfman McInnes   info->assemblies        = (double)A->num_ass;
494e220ebcSLois Curfman McInnes   info->mallocs           = 0;
504e220ebcSLois Curfman McInnes   info->memory            = A->mem;
514e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0;
524e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
534e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
544e220ebcSLois Curfman McInnes 
553a40ed3dSBarry Smith   PetscFunctionReturn(0);
56289bc588SBarry Smith }
57289bc588SBarry Smith 
584a2ae208SSatish Balay #undef __FUNCT__
594a2ae208SSatish Balay #define __FUNCT__ "MatScale_SeqDense"
60dfbe8321SBarry Smith PetscErrorCode MatScale_SeqDense(const PetscScalar *alpha,Mat A)
6180cd9d93SLois Curfman McInnes {
62273d9f13SBarry Smith   Mat_SeqDense *a = (Mat_SeqDense*)A->data;
634ce68768SBarry Smith   PetscBLASInt one = 1,lda = a->lda,j,nz;
6480cd9d93SLois Curfman McInnes 
653a40ed3dSBarry Smith   PetscFunctionBegin;
66a5ce6ee0Svictorle   if (lda>A->m) {
674ce68768SBarry Smith     nz = (PetscBLASInt)A->m;
68a5ce6ee0Svictorle     for (j=0; j<A->n; j++) {
69268466fbSBarry Smith       BLscal_(&nz,(PetscScalar*)alpha,a->v+j*lda,&one);
70a5ce6ee0Svictorle     }
71a5ce6ee0Svictorle   } else {
724ce68768SBarry Smith     nz = (PetscBLASInt)A->m*A->n;
73268466fbSBarry Smith     BLscal_(&nz,(PetscScalar*)alpha,a->v,&one);
74a5ce6ee0Svictorle   }
75b0a32e0cSBarry Smith   PetscLogFlops(nz);
763a40ed3dSBarry Smith   PetscFunctionReturn(0);
7780cd9d93SLois Curfman McInnes }
7880cd9d93SLois Curfman McInnes 
79289bc588SBarry Smith /* ---------------------------------------------------------------*/
806831982aSBarry Smith /* COMMENT: I have chosen to hide row permutation in the pivots,
816831982aSBarry Smith    rather than put it in the Mat->row slot.*/
824a2ae208SSatish Balay #undef __FUNCT__
834a2ae208SSatish Balay #define __FUNCT__ "MatLUFactor_SeqDense"
84dfbe8321SBarry Smith PetscErrorCode MatLUFactor_SeqDense(Mat A,IS row,IS col,MatFactorInfo *minfo)
85289bc588SBarry Smith {
86a07ab388SBarry Smith #if defined(PETSC_MISSING_LAPACK_GETRF)
8781f479a6Svictorle   PetscFunctionBegin;
88a07ab388SBarry Smith   SETERRQ(PETSC_ERR_SUP,"GETRF - Lapack routine is unavailable.");
89a07ab388SBarry Smith #else
90c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
916849ba73SBarry Smith   PetscErrorCode ierr;
924ce68768SBarry Smith   PetscBLASInt   n = (PetscBLASInt)A->n,m = (PetscBLASInt)A->m,info;
9355659b69SBarry Smith 
943a40ed3dSBarry Smith   PetscFunctionBegin;
95289bc588SBarry Smith   if (!mat->pivots) {
964ce68768SBarry Smith     ierr = PetscMalloc((A->m+1)*sizeof(PetscBLASInt),&mat->pivots);CHKERRQ(ierr);
974ce68768SBarry Smith     PetscLogObjectMemory(A,A->m*sizeof(PetscBLASInt));
98289bc588SBarry Smith   }
99f1af5d2fSBarry Smith   A->factor = FACTOR_LU;
100273d9f13SBarry Smith   if (!A->m || !A->n) PetscFunctionReturn(0);
1014ce68768SBarry Smith   LAgetrf_(&m,&n,mat->v,&mat->lda,mat->pivots,&info);
10229bbc08cSBarry Smith   if (info<0) SETERRQ(PETSC_ERR_LIB,"Bad argument to LU factorization");
10329bbc08cSBarry Smith   if (info>0) SETERRQ(PETSC_ERR_MAT_LU_ZRPVT,"Bad LU factorization");
104b0a32e0cSBarry Smith   PetscLogFlops((2*A->n*A->n*A->n)/3);
105a07ab388SBarry Smith #endif
1063a40ed3dSBarry Smith   PetscFunctionReturn(0);
107289bc588SBarry Smith }
1086ee01492SSatish Balay 
1094a2ae208SSatish Balay #undef __FUNCT__
1104a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_SeqDense"
111dfbe8321SBarry Smith PetscErrorCode MatDuplicate_SeqDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat)
11202cad45dSBarry Smith {
11302cad45dSBarry Smith   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data,*l;
1146849ba73SBarry Smith   PetscErrorCode ierr;
1154ce68768SBarry Smith   int            lda = (int)mat->lda,j,m;
11602cad45dSBarry Smith   Mat            newi;
11702cad45dSBarry Smith 
1183a40ed3dSBarry Smith   PetscFunctionBegin;
1195c5985e7SKris Buschelman   ierr = MatCreate(A->comm,A->m,A->n,A->m,A->n,&newi);CHKERRQ(ierr);
1205c5985e7SKris Buschelman   ierr = MatSetType(newi,A->type_name);CHKERRQ(ierr);
1215c5985e7SKris Buschelman   ierr = MatSeqDenseSetPreallocation(newi,PETSC_NULL);CHKERRQ(ierr);
1225609ef8eSBarry Smith   if (cpvalues == MAT_COPY_VALUES) {
123a5ce6ee0Svictorle     l = (Mat_SeqDense*)newi->data;
124a5ce6ee0Svictorle     if (lda>A->m) {
125a5ce6ee0Svictorle       m = A->m;
126a5ce6ee0Svictorle       for (j=0; j<A->n; j++) {
127a5ce6ee0Svictorle 	ierr = PetscMemcpy(l->v+j*m,mat->v+j*lda,m*sizeof(PetscScalar));CHKERRQ(ierr);
128a5ce6ee0Svictorle       }
129a5ce6ee0Svictorle     } else {
13087828ca2SBarry Smith       ierr = PetscMemcpy(l->v,mat->v,A->m*A->n*sizeof(PetscScalar));CHKERRQ(ierr);
13102cad45dSBarry Smith     }
132a5ce6ee0Svictorle   }
13302cad45dSBarry Smith   newi->assembled = PETSC_TRUE;
13402cad45dSBarry Smith   *newmat = newi;
1353a40ed3dSBarry Smith   PetscFunctionReturn(0);
13602cad45dSBarry Smith }
13702cad45dSBarry Smith 
1384a2ae208SSatish Balay #undef __FUNCT__
1394a2ae208SSatish Balay #define __FUNCT__ "MatLUFactorSymbolic_SeqDense"
140dfbe8321SBarry Smith PetscErrorCode MatLUFactorSymbolic_SeqDense(Mat A,IS row,IS col,MatFactorInfo *info,Mat *fact)
141289bc588SBarry Smith {
142dfbe8321SBarry Smith   PetscErrorCode ierr;
1433a40ed3dSBarry Smith 
1443a40ed3dSBarry Smith   PetscFunctionBegin;
1455609ef8eSBarry Smith   ierr = MatDuplicate_SeqDense(A,MAT_DO_NOT_COPY_VALUES,fact);CHKERRQ(ierr);
1463a40ed3dSBarry Smith   PetscFunctionReturn(0);
147289bc588SBarry Smith }
1486ee01492SSatish Balay 
1494a2ae208SSatish Balay #undef __FUNCT__
1504a2ae208SSatish Balay #define __FUNCT__ "MatLUFactorNumeric_SeqDense"
151dfbe8321SBarry Smith PetscErrorCode MatLUFactorNumeric_SeqDense(Mat A,Mat *fact)
152289bc588SBarry Smith {
15302cad45dSBarry Smith   Mat_SeqDense  *mat = (Mat_SeqDense*)A->data,*l = (Mat_SeqDense*)(*fact)->data;
1546849ba73SBarry Smith   PetscErrorCode ierr;
1556849ba73SBarry Smith   int           lda1=mat->lda,lda2=l->lda, m=A->m,n=A->n, j;
1564482741eSBarry Smith   MatFactorInfo info;
1573a40ed3dSBarry Smith 
1583a40ed3dSBarry Smith   PetscFunctionBegin;
15902cad45dSBarry Smith   /* copy the numerical values */
1601b807ce4Svictorle   if (lda1>m || lda2>m ) {
1611b807ce4Svictorle     for (j=0; j<n; j++) {
1621b807ce4Svictorle       ierr = PetscMemcpy(l->v+j*lda2,mat->v+j*lda1,m*sizeof(PetscScalar));CHKERRQ(ierr);
1631b807ce4Svictorle     }
1641b807ce4Svictorle   } else {
16587828ca2SBarry Smith     ierr = PetscMemcpy(l->v,mat->v,A->m*A->n*sizeof(PetscScalar));CHKERRQ(ierr);
1661b807ce4Svictorle   }
16702cad45dSBarry Smith   (*fact)->factor = 0;
1684482741eSBarry Smith   ierr = MatLUFactor(*fact,0,0,&info);CHKERRQ(ierr);
1693a40ed3dSBarry Smith   PetscFunctionReturn(0);
170289bc588SBarry Smith }
1716ee01492SSatish Balay 
1724a2ae208SSatish Balay #undef __FUNCT__
1734a2ae208SSatish Balay #define __FUNCT__ "MatCholeskyFactorSymbolic_SeqDense"
174dfbe8321SBarry Smith PetscErrorCode MatCholeskyFactorSymbolic_SeqDense(Mat A,IS row,MatFactorInfo *info,Mat *fact)
175289bc588SBarry Smith {
176dfbe8321SBarry Smith   PetscErrorCode ierr;
1773a40ed3dSBarry Smith 
1783a40ed3dSBarry Smith   PetscFunctionBegin;
1793a40ed3dSBarry Smith   ierr = MatConvert(A,MATSAME,fact);CHKERRQ(ierr);
1803a40ed3dSBarry Smith   PetscFunctionReturn(0);
181289bc588SBarry Smith }
1826ee01492SSatish Balay 
1834a2ae208SSatish Balay #undef __FUNCT__
1844a2ae208SSatish Balay #define __FUNCT__ "MatCholeskyFactor_SeqDense"
185dfbe8321SBarry Smith PetscErrorCode MatCholeskyFactor_SeqDense(Mat A,IS perm,MatFactorInfo *factinfo)
186289bc588SBarry Smith {
187a07ab388SBarry Smith #if defined(PETSC_MISSING_LAPACK_POTRF)
188a07ab388SBarry Smith   PetscFunctionBegin;
189a07ab388SBarry Smith   SETERRQ(PETSC_ERR_SUP,"POTRF - Lapack routine is unavailable.");
190a07ab388SBarry Smith #else
191c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
1926849ba73SBarry Smith   PetscErrorCode ierr;
1934ce68768SBarry Smith   PetscBLASInt   n = (PetscBLASInt)A->n,info;
19455659b69SBarry Smith 
1953a40ed3dSBarry Smith   PetscFunctionBegin;
196752f5567SLois Curfman McInnes   if (mat->pivots) {
197606d414cSSatish Balay     ierr = PetscFree(mat->pivots);CHKERRQ(ierr);
198b0a32e0cSBarry Smith     PetscLogObjectMemory(A,-A->m*sizeof(int));
199752f5567SLois Curfman McInnes     mat->pivots = 0;
200752f5567SLois Curfman McInnes   }
201273d9f13SBarry Smith   if (!A->m || !A->n) PetscFunctionReturn(0);
2024ce68768SBarry Smith   LApotrf_("L",&n,mat->v,&mat->lda,&info);
20377431f27SBarry Smith   if (info) SETERRQ1(PETSC_ERR_MAT_CH_ZRPVT,"Bad factorization: zero pivot in row %D",(PetscInt)info-1);
204c0bbcb79SLois Curfman McInnes   A->factor = FACTOR_CHOLESKY;
205b0a32e0cSBarry Smith   PetscLogFlops((A->n*A->n*A->n)/3);
206a07ab388SBarry Smith #endif
2073a40ed3dSBarry Smith   PetscFunctionReturn(0);
208289bc588SBarry Smith }
209289bc588SBarry Smith 
2104a2ae208SSatish Balay #undef __FUNCT__
2110b4b3355SBarry Smith #define __FUNCT__ "MatCholeskyFactorNumeric_SeqDense"
212dfbe8321SBarry Smith PetscErrorCode MatCholeskyFactorNumeric_SeqDense(Mat A,Mat *fact)
2130b4b3355SBarry Smith {
214dfbe8321SBarry Smith   PetscErrorCode ierr;
21515e8a5b3SHong Zhang   MatFactorInfo info;
2160b4b3355SBarry Smith 
2170b4b3355SBarry Smith   PetscFunctionBegin;
21815e8a5b3SHong Zhang   info.fill = 1.0;
21915e8a5b3SHong Zhang   ierr = MatCholeskyFactor_SeqDense(*fact,0,&info);CHKERRQ(ierr);
2200b4b3355SBarry Smith   PetscFunctionReturn(0);
2210b4b3355SBarry Smith }
2220b4b3355SBarry Smith 
2230b4b3355SBarry Smith #undef __FUNCT__
2244a2ae208SSatish Balay #define __FUNCT__ "MatSolve_SeqDense"
225dfbe8321SBarry Smith PetscErrorCode MatSolve_SeqDense(Mat A,Vec xx,Vec yy)
226289bc588SBarry Smith {
227c0bbcb79SLois Curfman McInnes   Mat_SeqDense *mat = (Mat_SeqDense*)A->data;
2286849ba73SBarry Smith   PetscErrorCode ierr;
2294ce68768SBarry Smith   PetscBLASInt  m = (PetscBLASInt)A->m, one = 1,info;
23087828ca2SBarry Smith   PetscScalar  *x,*y;
23167e560aaSBarry Smith 
2323a40ed3dSBarry Smith   PetscFunctionBegin;
233273d9f13SBarry Smith   if (!A->m || !A->n) PetscFunctionReturn(0);
2341ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2351ebc52fbSHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
23687828ca2SBarry Smith   ierr = PetscMemcpy(y,x,A->m*sizeof(PetscScalar));CHKERRQ(ierr);
237c0bbcb79SLois Curfman McInnes   if (A->factor == FACTOR_LU) {
238ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_GETRS)
23980444007SBarry Smith     SETERRQ(PETSC_ERR_SUP,"GETRS - Lapack routine is unavailable.");
240ae7cfcebSSatish Balay #else
2414ce68768SBarry Smith     LAgetrs_("N",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info);
2424ce68768SBarry Smith     if (info) SETERRQ(PETSC_ERR_LIB,"GETRS - Bad solve");
243ae7cfcebSSatish Balay #endif
2447a97a34bSBarry Smith   } else if (A->factor == FACTOR_CHOLESKY){
245ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_POTRS)
24680444007SBarry Smith     SETERRQ(PETSC_ERR_SUP,"POTRS - Lapack routine is unavailable.");
247ae7cfcebSSatish Balay #else
2484ce68768SBarry Smith     LApotrs_("L",&m,&one,mat->v,&mat->lda,y,&m,&info);
2494ce68768SBarry Smith     if (info) SETERRQ(PETSC_ERR_LIB,"POTRS Bad solve");
250ae7cfcebSSatish Balay #endif
251289bc588SBarry Smith   }
25229bbc08cSBarry Smith   else SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Matrix must be factored to solve");
2531ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2541ebc52fbSHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
255b0a32e0cSBarry Smith   PetscLogFlops(2*A->n*A->n - A->n);
2563a40ed3dSBarry Smith   PetscFunctionReturn(0);
257289bc588SBarry Smith }
2586ee01492SSatish Balay 
2594a2ae208SSatish Balay #undef __FUNCT__
2604a2ae208SSatish Balay #define __FUNCT__ "MatSolveTranspose_SeqDense"
261dfbe8321SBarry Smith PetscErrorCode MatSolveTranspose_SeqDense(Mat A,Vec xx,Vec yy)
262da3a660dSBarry Smith {
263c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
264dfbe8321SBarry Smith   PetscErrorCode ierr;
2654ce68768SBarry Smith   PetscBLASInt   m = (PetscBLASInt) A->m,one = 1,info;
26687828ca2SBarry Smith   PetscScalar    *x,*y;
26767e560aaSBarry Smith 
2683a40ed3dSBarry Smith   PetscFunctionBegin;
269273d9f13SBarry Smith   if (!A->m || !A->n) PetscFunctionReturn(0);
2701ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2711ebc52fbSHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
27287828ca2SBarry Smith   ierr = PetscMemcpy(y,x,A->m*sizeof(PetscScalar));CHKERRQ(ierr);
273752f5567SLois Curfman McInnes   /* assume if pivots exist then use LU; else Cholesky */
274da3a660dSBarry Smith   if (mat->pivots) {
275ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_GETRS)
27680444007SBarry Smith     SETERRQ(PETSC_ERR_SUP,"GETRS - Lapack routine is unavailable.");
277ae7cfcebSSatish Balay #else
2784ce68768SBarry Smith     LAgetrs_("T",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info);
2794ce68768SBarry Smith     if (info) SETERRQ(PETSC_ERR_LIB,"POTRS - Bad solve");
280ae7cfcebSSatish Balay #endif
2817a97a34bSBarry Smith   } else {
282ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_POTRS)
28380444007SBarry Smith     SETERRQ(PETSC_ERR_SUP,"POTRS - Lapack routine is unavailable.");
284ae7cfcebSSatish Balay #else
2854ce68768SBarry Smith     LApotrs_("L",&m,&one,mat->v,&mat->lda,y,&m,&info);
2864ce68768SBarry Smith     if (info) SETERRQ(PETSC_ERR_LIB,"POTRS - Bad solve");
287ae7cfcebSSatish Balay #endif
288da3a660dSBarry Smith   }
2891ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2901ebc52fbSHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
291b0a32e0cSBarry Smith   PetscLogFlops(2*A->n*A->n - A->n);
2923a40ed3dSBarry Smith   PetscFunctionReturn(0);
293da3a660dSBarry Smith }
2946ee01492SSatish Balay 
2954a2ae208SSatish Balay #undef __FUNCT__
2964a2ae208SSatish Balay #define __FUNCT__ "MatSolveAdd_SeqDense"
297dfbe8321SBarry Smith PetscErrorCode MatSolveAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy)
298da3a660dSBarry Smith {
299c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
300dfbe8321SBarry Smith   PetscErrorCode ierr;
3014ce68768SBarry Smith   PetscBLASInt   m = (PetscBLASInt)A->m,one = 1,info;
30287828ca2SBarry Smith   PetscScalar    *x,*y,sone = 1.0;
303da3a660dSBarry Smith   Vec            tmp = 0;
30467e560aaSBarry Smith 
3053a40ed3dSBarry Smith   PetscFunctionBegin;
3061ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
3071ebc52fbSHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
308273d9f13SBarry Smith   if (!A->m || !A->n) PetscFunctionReturn(0);
309da3a660dSBarry Smith   if (yy == zz) {
31078b31e54SBarry Smith     ierr = VecDuplicate(yy,&tmp);CHKERRQ(ierr);
311b0a32e0cSBarry Smith     PetscLogObjectParent(A,tmp);
31278b31e54SBarry Smith     ierr = VecCopy(yy,tmp);CHKERRQ(ierr);
313da3a660dSBarry Smith   }
31487828ca2SBarry Smith   ierr = PetscMemcpy(y,x,A->m*sizeof(PetscScalar));CHKERRQ(ierr);
315752f5567SLois Curfman McInnes   /* assume if pivots exist then use LU; else Cholesky */
316da3a660dSBarry Smith   if (mat->pivots) {
317ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_GETRS)
31880444007SBarry Smith     SETERRQ(PETSC_ERR_SUP,"GETRS - Lapack routine is unavailable.");
319ae7cfcebSSatish Balay #else
3204ce68768SBarry Smith     LAgetrs_("N",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info);
3212ffef20aSBarry Smith     if (info) SETERRQ(PETSC_ERR_LIB,"Bad solve");
322ae7cfcebSSatish Balay #endif
323a8c6a408SBarry Smith   } else {
324ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_POTRS)
32580444007SBarry Smith     SETERRQ(PETSC_ERR_SUP,"POTRS - Lapack routine is unavailable.");
326ae7cfcebSSatish Balay #else
3274ce68768SBarry Smith     LApotrs_("L",&m,&one,mat->v,&mat->lda,y,&m,&info);
3282ffef20aSBarry Smith     if (info) SETERRQ(PETSC_ERR_LIB,"Bad solve");
329ae7cfcebSSatish Balay #endif
330da3a660dSBarry Smith   }
331a8c6a408SBarry Smith   if (tmp) {ierr = VecAXPY(&sone,tmp,yy);CHKERRQ(ierr); ierr = VecDestroy(tmp);CHKERRQ(ierr);}
332a8c6a408SBarry Smith   else     {ierr = VecAXPY(&sone,zz,yy);CHKERRQ(ierr);}
3331ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
3341ebc52fbSHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
335b0a32e0cSBarry Smith   PetscLogFlops(2*A->n*A->n);
3363a40ed3dSBarry Smith   PetscFunctionReturn(0);
337da3a660dSBarry Smith }
33867e560aaSBarry Smith 
3394a2ae208SSatish Balay #undef __FUNCT__
3404a2ae208SSatish Balay #define __FUNCT__ "MatSolveTransposeAdd_SeqDense"
341dfbe8321SBarry Smith PetscErrorCode MatSolveTransposeAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy)
342da3a660dSBarry Smith {
343c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
3446849ba73SBarry Smith   PetscErrorCode ierr;
3454ce68768SBarry Smith   PetscBLASInt   m = (PetscBLASInt)A->m,one = 1,info;
34687828ca2SBarry Smith   PetscScalar    *x,*y,sone = 1.0;
347da3a660dSBarry Smith   Vec            tmp;
34867e560aaSBarry Smith 
3493a40ed3dSBarry Smith   PetscFunctionBegin;
350273d9f13SBarry Smith   if (!A->m || !A->n) PetscFunctionReturn(0);
3511ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
3521ebc52fbSHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
353da3a660dSBarry Smith   if (yy == zz) {
35478b31e54SBarry Smith     ierr = VecDuplicate(yy,&tmp);CHKERRQ(ierr);
355b0a32e0cSBarry Smith     PetscLogObjectParent(A,tmp);
35678b31e54SBarry Smith     ierr = VecCopy(yy,tmp);CHKERRQ(ierr);
357da3a660dSBarry Smith   }
35887828ca2SBarry Smith   ierr = PetscMemcpy(y,x,A->m*sizeof(PetscScalar));CHKERRQ(ierr);
359752f5567SLois Curfman McInnes   /* assume if pivots exist then use LU; else Cholesky */
360da3a660dSBarry Smith   if (mat->pivots) {
361ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_GETRS)
36280444007SBarry Smith     SETERRQ(PETSC_ERR_SUP,"GETRS - Lapack routine is unavailable.");
363ae7cfcebSSatish Balay #else
3644ce68768SBarry Smith     LAgetrs_("T",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info);
3652ffef20aSBarry Smith     if (info) SETERRQ(PETSC_ERR_LIB,"Bad solve");
366ae7cfcebSSatish Balay #endif
3673a40ed3dSBarry Smith   } else {
368ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_POTRS)
36980444007SBarry Smith     SETERRQ(PETSC_ERR_SUP,"POTRS - Lapack routine is unavailable.");
370ae7cfcebSSatish Balay #else
3714ce68768SBarry Smith     LApotrs_("L",&m,&one,mat->v,&mat->lda,y,&m,&info);
3722ffef20aSBarry Smith     if (info) SETERRQ(PETSC_ERR_LIB,"Bad solve");
373ae7cfcebSSatish Balay #endif
374da3a660dSBarry Smith   }
37590f02eecSBarry Smith   if (tmp) {
37690f02eecSBarry Smith     ierr = VecAXPY(&sone,tmp,yy);CHKERRQ(ierr);
37790f02eecSBarry Smith     ierr = VecDestroy(tmp);CHKERRQ(ierr);
3783a40ed3dSBarry Smith   } else {
37990f02eecSBarry Smith     ierr = VecAXPY(&sone,zz,yy);CHKERRQ(ierr);
38090f02eecSBarry Smith   }
3811ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
3821ebc52fbSHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
383b0a32e0cSBarry Smith   PetscLogFlops(2*A->n*A->n);
3843a40ed3dSBarry Smith   PetscFunctionReturn(0);
385da3a660dSBarry Smith }
386289bc588SBarry Smith /* ------------------------------------------------------------------*/
3874a2ae208SSatish Balay #undef __FUNCT__
3884a2ae208SSatish Balay #define __FUNCT__ "MatRelax_SeqDense"
3894ce68768SBarry Smith PetscErrorCode MatRelax_SeqDense(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal shift,int its,int lits,Vec xx)
390289bc588SBarry Smith {
391c0bbcb79SLois Curfman McInnes   Mat_SeqDense *mat = (Mat_SeqDense*)A->data;
39287828ca2SBarry Smith   PetscScalar  *x,*b,*v = mat->v,zero = 0.0,xt;
393dfbe8321SBarry Smith   PetscErrorCode ierr;
394dfbe8321SBarry Smith   int          m = A->m,i;
395aa482453SBarry Smith #if !defined(PETSC_USE_COMPLEX)
3964ce68768SBarry Smith   PetscBLASInt bm = (PetscBLASInt)m, o = 1;
397bc1b551cSSatish Balay #endif
398289bc588SBarry Smith 
3993a40ed3dSBarry Smith   PetscFunctionBegin;
400289bc588SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
4013a40ed3dSBarry Smith     /* this is a hack fix, should have another version without the second BLdot */
402bbb6d6a8SBarry Smith     ierr = VecSet(&zero,xx);CHKERRQ(ierr);
403289bc588SBarry Smith   }
4041ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
4051ebc52fbSHong Zhang   ierr = VecGetArray(bb,&b);CHKERRQ(ierr);
406b965ef7fSBarry Smith   its  = its*lits;
40777431f27SBarry Smith   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
408289bc588SBarry Smith   while (its--) {
409289bc588SBarry Smith     if (flag & SOR_FORWARD_SWEEP){
410289bc588SBarry Smith       for (i=0; i<m; i++) {
411aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
412f1747703SBarry Smith         /* cannot use BLAS dot for complex because compiler/linker is
413f1747703SBarry Smith            not happy about returning a double complex */
414f1747703SBarry Smith         int         _i;
41587828ca2SBarry Smith         PetscScalar sum = b[i];
416f1747703SBarry Smith         for (_i=0; _i<m; _i++) {
4173f6de6efSSatish Balay           sum -= PetscConj(v[i+_i*m])*x[_i];
418f1747703SBarry Smith         }
419f1747703SBarry Smith         xt = sum;
420f1747703SBarry Smith #else
4214ce68768SBarry Smith         xt = b[i] - BLdot_(&bm,v+i,&bm,x,&o);
422f1747703SBarry Smith #endif
42355a1b374SBarry Smith         x[i] = (1. - omega)*x[i] + omega*(xt+v[i + i*m]*x[i])/(v[i + i*m]+shift);
424289bc588SBarry Smith       }
425289bc588SBarry Smith     }
426289bc588SBarry Smith     if (flag & SOR_BACKWARD_SWEEP) {
427289bc588SBarry Smith       for (i=m-1; i>=0; i--) {
428aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
429f1747703SBarry Smith         /* cannot use BLAS dot for complex because compiler/linker is
430f1747703SBarry Smith            not happy about returning a double complex */
431f1747703SBarry Smith         int         _i;
43287828ca2SBarry Smith         PetscScalar sum = b[i];
433f1747703SBarry Smith         for (_i=0; _i<m; _i++) {
4343f6de6efSSatish Balay           sum -= PetscConj(v[i+_i*m])*x[_i];
435f1747703SBarry Smith         }
436f1747703SBarry Smith         xt = sum;
437f1747703SBarry Smith #else
4384ce68768SBarry Smith         xt = b[i] - BLdot_(&bm,v+i,&bm,x,&o);
439f1747703SBarry Smith #endif
44055a1b374SBarry Smith         x[i] = (1. - omega)*x[i] + omega*(xt+v[i + i*m]*x[i])/(v[i + i*m]+shift);
441289bc588SBarry Smith       }
442289bc588SBarry Smith     }
443289bc588SBarry Smith   }
4441ebc52fbSHong Zhang   ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr);
4451ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
4463a40ed3dSBarry Smith   PetscFunctionReturn(0);
447289bc588SBarry Smith }
448289bc588SBarry Smith 
449289bc588SBarry Smith /* -----------------------------------------------------------------*/
4504a2ae208SSatish Balay #undef __FUNCT__
4514a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_SeqDense"
452dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_SeqDense(Mat A,Vec xx,Vec yy)
453289bc588SBarry Smith {
454c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
45587828ca2SBarry Smith   PetscScalar    *v = mat->v,*x,*y;
456dfbe8321SBarry Smith   PetscErrorCode ierr;
4574ce68768SBarry Smith   PetscBLASInt   m = (PetscBLASInt)A->m, n = (PetscBLASInt)A->n,_One=1;
458ea709b57SSatish Balay   PetscScalar    _DOne=1.0,_DZero=0.0;
4593a40ed3dSBarry Smith 
4603a40ed3dSBarry Smith   PetscFunctionBegin;
461273d9f13SBarry Smith   if (!A->m || !A->n) PetscFunctionReturn(0);
4621ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
4631ebc52fbSHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
4644ce68768SBarry Smith   LAgemv_("T",&m,&n,&_DOne,v,&mat->lda,x,&_One,&_DZero,y,&_One);
4651ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
4661ebc52fbSHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
467b0a32e0cSBarry Smith   PetscLogFlops(2*A->m*A->n - A->n);
4683a40ed3dSBarry Smith   PetscFunctionReturn(0);
469289bc588SBarry Smith }
4706ee01492SSatish Balay 
4714a2ae208SSatish Balay #undef __FUNCT__
4724a2ae208SSatish Balay #define __FUNCT__ "MatMult_SeqDense"
473dfbe8321SBarry Smith PetscErrorCode MatMult_SeqDense(Mat A,Vec xx,Vec yy)
474289bc588SBarry Smith {
475c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
47687828ca2SBarry Smith   PetscScalar    *v = mat->v,*x,*y,_DOne=1.0,_DZero=0.0;
477dfbe8321SBarry Smith   PetscErrorCode ierr;
4784ce68768SBarry Smith   PetscBLASInt   m = (PetscBLASInt)A->m, n = (PetscBLASInt)A->n, _One=1;
4793a40ed3dSBarry Smith 
4803a40ed3dSBarry Smith   PetscFunctionBegin;
481273d9f13SBarry Smith   if (!A->m || !A->n) PetscFunctionReturn(0);
4821ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
4831ebc52fbSHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
4844ce68768SBarry Smith   LAgemv_("N",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DZero,y,&_One);
4851ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
4861ebc52fbSHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
487b0a32e0cSBarry Smith   PetscLogFlops(2*A->m*A->n - A->m);
4883a40ed3dSBarry Smith   PetscFunctionReturn(0);
489289bc588SBarry Smith }
4906ee01492SSatish Balay 
4914a2ae208SSatish Balay #undef __FUNCT__
4924a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_SeqDense"
493dfbe8321SBarry Smith PetscErrorCode MatMultAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy)
494289bc588SBarry Smith {
495c0bbcb79SLois Curfman McInnes   Mat_SeqDense *mat = (Mat_SeqDense*)A->data;
49687828ca2SBarry Smith   PetscScalar  *v = mat->v,*x,*y,_DOne=1.0;
497dfbe8321SBarry Smith   PetscErrorCode ierr;
4984ce68768SBarry Smith   PetscBLASInt   m = (PetscBLASInt)A->m, n = (PetscBLASInt)A->n, _One=1;
4993a40ed3dSBarry Smith 
5003a40ed3dSBarry Smith   PetscFunctionBegin;
501273d9f13SBarry Smith   if (!A->m || !A->n) PetscFunctionReturn(0);
502600d6d0bSBarry Smith   if (zz != yy) {ierr = VecCopy(zz,yy);CHKERRQ(ierr);}
5031ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
5041ebc52fbSHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
5054ce68768SBarry Smith   LAgemv_("N",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DOne,y,&_One);
5061ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
5071ebc52fbSHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
508b0a32e0cSBarry Smith   PetscLogFlops(2*A->m*A->n);
5093a40ed3dSBarry Smith   PetscFunctionReturn(0);
510289bc588SBarry Smith }
5116ee01492SSatish Balay 
5124a2ae208SSatish Balay #undef __FUNCT__
5134a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_SeqDense"
514dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy)
515289bc588SBarry Smith {
516c0bbcb79SLois Curfman McInnes   Mat_SeqDense *mat = (Mat_SeqDense*)A->data;
51787828ca2SBarry Smith   PetscScalar  *v = mat->v,*x,*y;
518dfbe8321SBarry Smith   PetscErrorCode ierr;
5194ce68768SBarry Smith   PetscBLASInt   m = (PetscBLASInt)A->m, n = (PetscBLASInt)A->n, _One=1;
52087828ca2SBarry Smith   PetscScalar  _DOne=1.0;
5213a40ed3dSBarry Smith 
5223a40ed3dSBarry Smith   PetscFunctionBegin;
523273d9f13SBarry Smith   if (!A->m || !A->n) PetscFunctionReturn(0);
524600d6d0bSBarry Smith   if (zz != yy) {ierr = VecCopy(zz,yy);CHKERRQ(ierr);}
5251ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
5261ebc52fbSHong Zhang   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
5274ce68768SBarry Smith   LAgemv_("T",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DOne,y,&_One);
5281ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
5291ebc52fbSHong Zhang   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
530b0a32e0cSBarry Smith   PetscLogFlops(2*A->m*A->n);
5313a40ed3dSBarry Smith   PetscFunctionReturn(0);
532289bc588SBarry Smith }
533289bc588SBarry Smith 
534289bc588SBarry Smith /* -----------------------------------------------------------------*/
5354a2ae208SSatish Balay #undef __FUNCT__
5364a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_SeqDense"
537dfbe8321SBarry Smith PetscErrorCode MatGetRow_SeqDense(Mat A,int row,int *ncols,int **cols,PetscScalar **vals)
538289bc588SBarry Smith {
539c0bbcb79SLois Curfman McInnes   Mat_SeqDense *mat = (Mat_SeqDense*)A->data;
54087828ca2SBarry Smith   PetscScalar  *v;
5416849ba73SBarry Smith   PetscErrorCode ierr;
5426849ba73SBarry Smith   int          i;
54367e560aaSBarry Smith 
5443a40ed3dSBarry Smith   PetscFunctionBegin;
545273d9f13SBarry Smith   *ncols = A->n;
546289bc588SBarry Smith   if (cols) {
547b0a32e0cSBarry Smith     ierr = PetscMalloc((A->n+1)*sizeof(int),cols);CHKERRQ(ierr);
548273d9f13SBarry Smith     for (i=0; i<A->n; i++) (*cols)[i] = i;
549289bc588SBarry Smith   }
550289bc588SBarry Smith   if (vals) {
55187828ca2SBarry Smith     ierr = PetscMalloc((A->n+1)*sizeof(PetscScalar),vals);CHKERRQ(ierr);
552289bc588SBarry Smith     v    = mat->v + row;
5531b807ce4Svictorle     for (i=0; i<A->n; i++) {(*vals)[i] = *v; v += mat->lda;}
554289bc588SBarry Smith   }
5553a40ed3dSBarry Smith   PetscFunctionReturn(0);
556289bc588SBarry Smith }
5576ee01492SSatish Balay 
5584a2ae208SSatish Balay #undef __FUNCT__
5594a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_SeqDense"
560dfbe8321SBarry Smith PetscErrorCode MatRestoreRow_SeqDense(Mat A,int row,int *ncols,int **cols,PetscScalar **vals)
561289bc588SBarry Smith {
562dfbe8321SBarry Smith   PetscErrorCode ierr;
563606d414cSSatish Balay   PetscFunctionBegin;
564606d414cSSatish Balay   if (cols) {ierr = PetscFree(*cols);CHKERRQ(ierr);}
565606d414cSSatish Balay   if (vals) {ierr = PetscFree(*vals);CHKERRQ(ierr); }
5663a40ed3dSBarry Smith   PetscFunctionReturn(0);
567289bc588SBarry Smith }
568289bc588SBarry Smith /* ----------------------------------------------------------------*/
5694a2ae208SSatish Balay #undef __FUNCT__
5704a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_SeqDense"
571dfbe8321SBarry Smith PetscErrorCode MatSetValues_SeqDense(Mat A,int m,const int indexm[],int n,const int indexn[],const PetscScalar v[],InsertMode addv)
572289bc588SBarry Smith {
573c0bbcb79SLois Curfman McInnes   Mat_SeqDense *mat = (Mat_SeqDense*)A->data;
574cddbea37SSatish Balay   int          i,j,idx=0;
575d6dfbf8fSBarry Smith 
5763a40ed3dSBarry Smith   PetscFunctionBegin;
577289bc588SBarry Smith   if (!mat->roworiented) {
578dbb450caSBarry Smith     if (addv == INSERT_VALUES) {
579289bc588SBarry Smith       for (j=0; j<n; j++) {
580cddbea37SSatish Balay         if (indexn[j] < 0) {idx += m; continue;}
581aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
58277431f27SBarry Smith         if (indexn[j] >= A->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->n-1);
58358804f6dSBarry Smith #endif
584289bc588SBarry Smith         for (i=0; i<m; i++) {
585cddbea37SSatish Balay           if (indexm[i] < 0) {idx++; continue;}
586aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
58777431f27SBarry Smith           if (indexm[i] >= A->m) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->m-1);
58858804f6dSBarry Smith #endif
589cddbea37SSatish Balay           mat->v[indexn[j]*mat->lda + indexm[i]] = v[idx++];
590289bc588SBarry Smith         }
591289bc588SBarry Smith       }
5923a40ed3dSBarry Smith     } else {
593289bc588SBarry Smith       for (j=0; j<n; j++) {
594cddbea37SSatish Balay         if (indexn[j] < 0) {idx += m; continue;}
595aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
59677431f27SBarry Smith         if (indexn[j] >= A->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->n-1);
59758804f6dSBarry Smith #endif
598289bc588SBarry Smith         for (i=0; i<m; i++) {
599cddbea37SSatish Balay           if (indexm[i] < 0) {idx++; continue;}
600aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
60177431f27SBarry Smith           if (indexm[i] >= A->m) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->m-1);
60258804f6dSBarry Smith #endif
603cddbea37SSatish Balay           mat->v[indexn[j]*mat->lda + indexm[i]] += v[idx++];
604289bc588SBarry Smith         }
605289bc588SBarry Smith       }
606289bc588SBarry Smith     }
6073a40ed3dSBarry Smith   } else {
608dbb450caSBarry Smith     if (addv == INSERT_VALUES) {
609e8d4e0b9SBarry Smith       for (i=0; i<m; i++) {
610cddbea37SSatish Balay         if (indexm[i] < 0) { idx += n; continue;}
611aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
61277431f27SBarry Smith         if (indexm[i] >= A->m) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->m-1);
61358804f6dSBarry Smith #endif
614e8d4e0b9SBarry Smith         for (j=0; j<n; j++) {
615cddbea37SSatish Balay           if (indexn[j] < 0) { idx++; continue;}
616aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
61777431f27SBarry Smith           if (indexn[j] >= A->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->n-1);
61858804f6dSBarry Smith #endif
619cddbea37SSatish Balay           mat->v[indexn[j]*mat->lda + indexm[i]] = v[idx++];
620e8d4e0b9SBarry Smith         }
621e8d4e0b9SBarry Smith       }
6223a40ed3dSBarry Smith     } else {
623289bc588SBarry Smith       for (i=0; i<m; i++) {
624cddbea37SSatish Balay         if (indexm[i] < 0) { idx += n; continue;}
625aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
62677431f27SBarry Smith         if (indexm[i] >= A->m) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->m-1);
62758804f6dSBarry Smith #endif
628289bc588SBarry Smith         for (j=0; j<n; j++) {
629cddbea37SSatish Balay           if (indexn[j] < 0) { idx++; continue;}
630aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
63177431f27SBarry Smith           if (indexn[j] >= A->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->n-1);
63258804f6dSBarry Smith #endif
633cddbea37SSatish Balay           mat->v[indexn[j]*mat->lda + indexm[i]] += v[idx++];
634289bc588SBarry Smith         }
635289bc588SBarry Smith       }
636289bc588SBarry Smith     }
637e8d4e0b9SBarry Smith   }
6383a40ed3dSBarry Smith   PetscFunctionReturn(0);
639289bc588SBarry Smith }
640e8d4e0b9SBarry Smith 
6414a2ae208SSatish Balay #undef __FUNCT__
6424a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_SeqDense"
643dfbe8321SBarry Smith PetscErrorCode MatGetValues_SeqDense(Mat A,int m,const int indexm[],int n,const int indexn[],PetscScalar v[])
644ae80bb75SLois Curfman McInnes {
645ae80bb75SLois Curfman McInnes   Mat_SeqDense *mat = (Mat_SeqDense*)A->data;
646ae80bb75SLois Curfman McInnes   int          i,j;
64787828ca2SBarry Smith   PetscScalar  *vpt = v;
648ae80bb75SLois Curfman McInnes 
6493a40ed3dSBarry Smith   PetscFunctionBegin;
650ae80bb75SLois Curfman McInnes   /* row-oriented output */
651ae80bb75SLois Curfman McInnes   for (i=0; i<m; i++) {
652ae80bb75SLois Curfman McInnes     for (j=0; j<n; j++) {
6531b807ce4Svictorle       *vpt++ = mat->v[indexn[j]*mat->lda + indexm[i]];
654ae80bb75SLois Curfman McInnes     }
655ae80bb75SLois Curfman McInnes   }
6563a40ed3dSBarry Smith   PetscFunctionReturn(0);
657ae80bb75SLois Curfman McInnes }
658ae80bb75SLois Curfman McInnes 
659289bc588SBarry Smith /* -----------------------------------------------------------------*/
660289bc588SBarry Smith 
661e090d566SSatish Balay #include "petscsys.h"
66288e32edaSLois Curfman McInnes 
6634a2ae208SSatish Balay #undef __FUNCT__
6644a2ae208SSatish Balay #define __FUNCT__ "MatLoad_SeqDense"
665dfbe8321SBarry Smith PetscErrorCode MatLoad_SeqDense(PetscViewer viewer,const MatType type,Mat *A)
66688e32edaSLois Curfman McInnes {
66788e32edaSLois Curfman McInnes   Mat_SeqDense *a;
66888e32edaSLois Curfman McInnes   Mat          B;
6696849ba73SBarry Smith   PetscErrorCode ierr;
6706849ba73SBarry Smith   int          *scols,i,j,nz,fd,header[4],size;
67188e32edaSLois Curfman McInnes   int          *rowlengths = 0,M,N,*cols;
67287828ca2SBarry Smith   PetscScalar  *vals,*svals,*v,*w;
67319bcc07fSBarry Smith   MPI_Comm     comm = ((PetscObject)viewer)->comm;
67488e32edaSLois Curfman McInnes 
6753a40ed3dSBarry Smith   PetscFunctionBegin;
676d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
67729bbc08cSBarry Smith   if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"view must have one processor");
678b0a32e0cSBarry Smith   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
6790752156aSBarry Smith   ierr = PetscBinaryRead(fd,header,4,PETSC_INT);CHKERRQ(ierr);
680552e946dSBarry Smith   if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Not matrix object");
68188e32edaSLois Curfman McInnes   M = header[1]; N = header[2]; nz = header[3];
68288e32edaSLois Curfman McInnes 
68390ace30eSBarry Smith   if (nz == MATRIX_BINARY_FORMAT_DENSE) { /* matrix in file is dense */
6845c5985e7SKris Buschelman     ierr = MatCreate(comm,M,N,M,N,A);CHKERRQ(ierr);
685be5d1d56SKris Buschelman     ierr = MatSetType(*A,type);CHKERRQ(ierr);
6865c5985e7SKris Buschelman     ierr = MatSeqDenseSetPreallocation(*A,PETSC_NULL);CHKERRQ(ierr);
68790ace30eSBarry Smith     B    = *A;
68890ace30eSBarry Smith     a    = (Mat_SeqDense*)B->data;
6894a41a4d3SSatish Balay     v    = a->v;
6904a41a4d3SSatish Balay     /* Allocate some temp space to read in the values and then flip them
6914a41a4d3SSatish Balay        from row major to column major */
692b72907f3SBarry Smith     ierr = PetscMalloc((M*N > 0 ? M*N : 1)*sizeof(PetscScalar),&w);CHKERRQ(ierr);
69390ace30eSBarry Smith     /* read in nonzero values */
6944a41a4d3SSatish Balay     ierr = PetscBinaryRead(fd,w,M*N,PETSC_SCALAR);CHKERRQ(ierr);
6954a41a4d3SSatish Balay     /* now flip the values and store them in the matrix*/
6964a41a4d3SSatish Balay     for (j=0; j<N; j++) {
6974a41a4d3SSatish Balay       for (i=0; i<M; i++) {
6984a41a4d3SSatish Balay         *v++ =w[i*N+j];
6994a41a4d3SSatish Balay       }
7004a41a4d3SSatish Balay     }
701606d414cSSatish Balay     ierr = PetscFree(w);CHKERRQ(ierr);
7026d4a8577SBarry Smith     ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
7036d4a8577SBarry Smith     ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
70490ace30eSBarry Smith   } else {
70588e32edaSLois Curfman McInnes     /* read row lengths */
706b0a32e0cSBarry Smith     ierr = PetscMalloc((M+1)*sizeof(int),&rowlengths);CHKERRQ(ierr);
7070752156aSBarry Smith     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
70888e32edaSLois Curfman McInnes 
70988e32edaSLois Curfman McInnes     /* create our matrix */
7105c5985e7SKris Buschelman     ierr = MatCreate(comm,M,N,M,N,A);CHKERRQ(ierr);
711be5d1d56SKris Buschelman     ierr = MatSetType(*A,type);CHKERRQ(ierr);
7125c5985e7SKris Buschelman     ierr = MatSeqDenseSetPreallocation(*A,PETSC_NULL);CHKERRQ(ierr);
71388e32edaSLois Curfman McInnes     B = *A;
71488e32edaSLois Curfman McInnes     a = (Mat_SeqDense*)B->data;
71588e32edaSLois Curfman McInnes     v = a->v;
71688e32edaSLois Curfman McInnes 
71788e32edaSLois Curfman McInnes     /* read column indices and nonzeros */
718b0a32e0cSBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(int),&scols);CHKERRQ(ierr);
719b0a32e0cSBarry Smith     cols = scols;
7200752156aSBarry Smith     ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
72187828ca2SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&svals);CHKERRQ(ierr);
722b0a32e0cSBarry Smith     vals = svals;
7230752156aSBarry Smith     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
72488e32edaSLois Curfman McInnes 
72588e32edaSLois Curfman McInnes     /* insert into matrix */
72688e32edaSLois Curfman McInnes     for (i=0; i<M; i++) {
72788e32edaSLois Curfman McInnes       for (j=0; j<rowlengths[i]; j++) v[i+M*scols[j]] = svals[j];
72888e32edaSLois Curfman McInnes       svals += rowlengths[i]; scols += rowlengths[i];
72988e32edaSLois Curfman McInnes     }
730606d414cSSatish Balay     ierr = PetscFree(vals);CHKERRQ(ierr);
731606d414cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
732606d414cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
73388e32edaSLois Curfman McInnes 
7346d4a8577SBarry Smith     ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
7356d4a8577SBarry Smith     ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
73690ace30eSBarry Smith   }
7373a40ed3dSBarry Smith   PetscFunctionReturn(0);
73888e32edaSLois Curfman McInnes }
73988e32edaSLois Curfman McInnes 
740e090d566SSatish Balay #include "petscsys.h"
741932b0c3eSLois Curfman McInnes 
7424a2ae208SSatish Balay #undef __FUNCT__
7434a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqDense_ASCII"
7446849ba73SBarry Smith static PetscErrorCode MatView_SeqDense_ASCII(Mat A,PetscViewer viewer)
745289bc588SBarry Smith {
746932b0c3eSLois Curfman McInnes   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
747dfbe8321SBarry Smith   PetscErrorCode ierr;
748dfbe8321SBarry Smith   int               i,j;
749fb9695e5SSatish Balay   char              *name;
75087828ca2SBarry Smith   PetscScalar       *v;
751f3ef73ceSBarry Smith   PetscViewerFormat format;
752932b0c3eSLois Curfman McInnes 
7533a40ed3dSBarry Smith   PetscFunctionBegin;
754435da068SBarry Smith   ierr = PetscObjectGetName((PetscObject)A,&name);CHKERRQ(ierr);
755b0a32e0cSBarry Smith   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
756456192e2SBarry Smith   if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
7573a40ed3dSBarry Smith     PetscFunctionReturn(0);  /* do nothing for now */
758fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_COMMON) {
759b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr);
760273d9f13SBarry Smith     for (i=0; i<A->m; i++) {
76144cd7ae7SLois Curfman McInnes       v = a->v + i;
76277431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr);
763273d9f13SBarry Smith       for (j=0; j<A->n; j++) {
764aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
765329f5518SBarry Smith         if (PetscRealPart(*v) != 0.0 && PetscImaginaryPart(*v) != 0.0) {
76677431f27SBarry Smith           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",j,PetscRealPart(*v),PetscImaginaryPart(*v));CHKERRQ(ierr);
767329f5518SBarry Smith         } else if (PetscRealPart(*v)) {
76877431f27SBarry Smith           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",j,PetscRealPart(*v));CHKERRQ(ierr);
7696831982aSBarry Smith         }
77080cd9d93SLois Curfman McInnes #else
7716831982aSBarry Smith         if (*v) {
77277431f27SBarry Smith           ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",j,*v);CHKERRQ(ierr);
7736831982aSBarry Smith         }
77480cd9d93SLois Curfman McInnes #endif
7751b807ce4Svictorle         v += a->lda;
77680cd9d93SLois Curfman McInnes       }
777b0a32e0cSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
77880cd9d93SLois Curfman McInnes     }
779b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr);
7803a40ed3dSBarry Smith   } else {
781b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr);
782aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
783ffac6cdbSBarry Smith     PetscTruth allreal = PETSC_TRUE;
78447989497SBarry Smith     /* determine if matrix has all real values */
78547989497SBarry Smith     v = a->v;
786201f5f94SSatish Balay     for (i=0; i<A->m*A->n; i++) {
787ffac6cdbSBarry Smith 	if (PetscImaginaryPart(v[i])) { allreal = PETSC_FALSE; break ;}
78847989497SBarry Smith     }
78947989497SBarry Smith #endif
790fb9695e5SSatish Balay     if (format == PETSC_VIEWER_ASCII_MATLAB) {
7913a7fca6bSBarry Smith       ierr = PetscObjectGetName((PetscObject)A,&name);CHKERRQ(ierr);
79277431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"%% Size = %D %D \n",A->m,A->n);CHKERRQ(ierr);
79377431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"%s = zeros(%D,%D);\n",name,A->m,A->n);CHKERRQ(ierr);
794fb9695e5SSatish Balay       ierr = PetscViewerASCIIPrintf(viewer,"%s = [\n",name);CHKERRQ(ierr);
795ffac6cdbSBarry Smith     }
796ffac6cdbSBarry Smith 
797273d9f13SBarry Smith     for (i=0; i<A->m; i++) {
798932b0c3eSLois Curfman McInnes       v = a->v + i;
799273d9f13SBarry Smith       for (j=0; j<A->n; j++) {
800aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
80147989497SBarry Smith         if (allreal) {
8021b807ce4Svictorle           ierr = PetscViewerASCIIPrintf(viewer,"%6.4e ",PetscRealPart(*v));CHKERRQ(ierr);
80347989497SBarry Smith         } else {
8041b807ce4Svictorle           ierr = PetscViewerASCIIPrintf(viewer,"%6.4e + %6.4e i ",PetscRealPart(*v),PetscImaginaryPart(*v));CHKERRQ(ierr);
80547989497SBarry Smith         }
806289bc588SBarry Smith #else
8071b807ce4Svictorle         ierr = PetscViewerASCIIPrintf(viewer,"%6.4e ",*v);CHKERRQ(ierr);
808289bc588SBarry Smith #endif
8091b807ce4Svictorle 	v += a->lda;
810289bc588SBarry Smith       }
811b0a32e0cSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
812289bc588SBarry Smith     }
813fb9695e5SSatish Balay     if (format == PETSC_VIEWER_ASCII_MATLAB) {
814b0a32e0cSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"];\n");CHKERRQ(ierr);
815ffac6cdbSBarry Smith     }
816b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr);
817da3a660dSBarry Smith   }
818b0a32e0cSBarry Smith   ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
8193a40ed3dSBarry Smith   PetscFunctionReturn(0);
820289bc588SBarry Smith }
821289bc588SBarry Smith 
8224a2ae208SSatish Balay #undef __FUNCT__
8234a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqDense_Binary"
8246849ba73SBarry Smith static PetscErrorCode MatView_SeqDense_Binary(Mat A,PetscViewer viewer)
825932b0c3eSLois Curfman McInnes {
826932b0c3eSLois Curfman McInnes   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
8276849ba73SBarry Smith   PetscErrorCode    ierr;
8286f69ff64SBarry Smith   PetscInt          ict,j,n = A->n,m = A->m,i,fd,*col_lens,nz = m*n;
82987828ca2SBarry Smith   PetscScalar       *v,*anonz,*vals;
830f3ef73ceSBarry Smith   PetscViewerFormat format;
831932b0c3eSLois Curfman McInnes 
8323a40ed3dSBarry Smith   PetscFunctionBegin;
833b0a32e0cSBarry Smith   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
83490ace30eSBarry Smith 
835b0a32e0cSBarry Smith   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
836fb9695e5SSatish Balay   if (format == PETSC_VIEWER_BINARY_NATIVE) {
83790ace30eSBarry Smith     /* store the matrix as a dense matrix */
838b0a32e0cSBarry Smith     ierr = PetscMalloc(4*sizeof(int),&col_lens);CHKERRQ(ierr);
839552e946dSBarry Smith     col_lens[0] = MAT_FILE_COOKIE;
84090ace30eSBarry Smith     col_lens[1] = m;
84190ace30eSBarry Smith     col_lens[2] = n;
84290ace30eSBarry Smith     col_lens[3] = MATRIX_BINARY_FORMAT_DENSE;
8436f69ff64SBarry Smith     ierr = PetscBinaryWrite(fd,col_lens,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
844606d414cSSatish Balay     ierr = PetscFree(col_lens);CHKERRQ(ierr);
84590ace30eSBarry Smith 
84690ace30eSBarry Smith     /* write out matrix, by rows */
84787828ca2SBarry Smith     ierr = PetscMalloc((m*n+1)*sizeof(PetscScalar),&vals);CHKERRQ(ierr);
84890ace30eSBarry Smith     v    = a->v;
84990ace30eSBarry Smith     for (i=0; i<m; i++) {
85090ace30eSBarry Smith       for (j=0; j<n; j++) {
85190ace30eSBarry Smith         vals[i + j*m] = *v++;
85290ace30eSBarry Smith       }
85390ace30eSBarry Smith     }
8546f69ff64SBarry Smith     ierr = PetscBinaryWrite(fd,vals,n*m,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr);
855606d414cSSatish Balay     ierr = PetscFree(vals);CHKERRQ(ierr);
85690ace30eSBarry Smith   } else {
857b0a32e0cSBarry Smith     ierr = PetscMalloc((4+nz)*sizeof(int),&col_lens);CHKERRQ(ierr);
858552e946dSBarry Smith     col_lens[0] = MAT_FILE_COOKIE;
859932b0c3eSLois Curfman McInnes     col_lens[1] = m;
860932b0c3eSLois Curfman McInnes     col_lens[2] = n;
861932b0c3eSLois Curfman McInnes     col_lens[3] = nz;
862932b0c3eSLois Curfman McInnes 
863932b0c3eSLois Curfman McInnes     /* store lengths of each row and write (including header) to file */
864932b0c3eSLois Curfman McInnes     for (i=0; i<m; i++) col_lens[4+i] = n;
8656f69ff64SBarry Smith     ierr = PetscBinaryWrite(fd,col_lens,4+m,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
866932b0c3eSLois Curfman McInnes 
867932b0c3eSLois Curfman McInnes     /* Possibly should write in smaller increments, not whole matrix at once? */
868932b0c3eSLois Curfman McInnes     /* store column indices (zero start index) */
869932b0c3eSLois Curfman McInnes     ict = 0;
870932b0c3eSLois Curfman McInnes     for (i=0; i<m; i++) {
871932b0c3eSLois Curfman McInnes       for (j=0; j<n; j++) col_lens[ict++] = j;
872932b0c3eSLois Curfman McInnes     }
8736f69ff64SBarry Smith     ierr = PetscBinaryWrite(fd,col_lens,nz,PETSC_INT,PETSC_FALSE);CHKERRQ(ierr);
874606d414cSSatish Balay     ierr = PetscFree(col_lens);CHKERRQ(ierr);
875932b0c3eSLois Curfman McInnes 
876932b0c3eSLois Curfman McInnes     /* store nonzero values */
87787828ca2SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&anonz);CHKERRQ(ierr);
878932b0c3eSLois Curfman McInnes     ict  = 0;
879932b0c3eSLois Curfman McInnes     for (i=0; i<m; i++) {
880932b0c3eSLois Curfman McInnes       v = a->v + i;
881932b0c3eSLois Curfman McInnes       for (j=0; j<n; j++) {
8821b807ce4Svictorle         anonz[ict++] = *v; v += a->lda;
883932b0c3eSLois Curfman McInnes       }
884932b0c3eSLois Curfman McInnes     }
8856f69ff64SBarry Smith     ierr = PetscBinaryWrite(fd,anonz,nz,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr);
886606d414cSSatish Balay     ierr = PetscFree(anonz);CHKERRQ(ierr);
88790ace30eSBarry Smith   }
8883a40ed3dSBarry Smith   PetscFunctionReturn(0);
889932b0c3eSLois Curfman McInnes }
890932b0c3eSLois Curfman McInnes 
8914a2ae208SSatish Balay #undef __FUNCT__
8924a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqDense_Draw_Zoom"
893dfbe8321SBarry Smith PetscErrorCode MatView_SeqDense_Draw_Zoom(PetscDraw draw,void *Aa)
894f1af5d2fSBarry Smith {
895f1af5d2fSBarry Smith   Mat               A = (Mat) Aa;
896f1af5d2fSBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
8976849ba73SBarry Smith   PetscErrorCode ierr;
8986849ba73SBarry Smith   int               m = A->m,n = A->n,color,i,j;
89987828ca2SBarry Smith   PetscScalar       *v = a->v;
900b0a32e0cSBarry Smith   PetscViewer       viewer;
901b0a32e0cSBarry Smith   PetscDraw         popup;
902329f5518SBarry Smith   PetscReal         xl,yl,xr,yr,x_l,x_r,y_l,y_r,scale,maxv = 0.0;
903f3ef73ceSBarry Smith   PetscViewerFormat format;
904f1af5d2fSBarry Smith 
905f1af5d2fSBarry Smith   PetscFunctionBegin;
906f1af5d2fSBarry Smith 
907f1af5d2fSBarry Smith   ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr);
908b0a32e0cSBarry Smith   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
909b0a32e0cSBarry Smith   ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr);
910f1af5d2fSBarry Smith 
911f1af5d2fSBarry Smith   /* Loop over matrix elements drawing boxes */
912fb9695e5SSatish Balay   if (format != PETSC_VIEWER_DRAW_CONTOUR) {
913f1af5d2fSBarry Smith     /* Blue for negative and Red for positive */
914b0a32e0cSBarry Smith     color = PETSC_DRAW_BLUE;
915f1af5d2fSBarry Smith     for(j = 0; j < n; j++) {
916f1af5d2fSBarry Smith       x_l = j;
917f1af5d2fSBarry Smith       x_r = x_l + 1.0;
918f1af5d2fSBarry Smith       for(i = 0; i < m; i++) {
919f1af5d2fSBarry Smith         y_l = m - i - 1.0;
920f1af5d2fSBarry Smith         y_r = y_l + 1.0;
921f1af5d2fSBarry Smith #if defined(PETSC_USE_COMPLEX)
922329f5518SBarry Smith         if (PetscRealPart(v[j*m+i]) >  0.) {
923b0a32e0cSBarry Smith           color = PETSC_DRAW_RED;
924329f5518SBarry Smith         } else if (PetscRealPart(v[j*m+i]) <  0.) {
925b0a32e0cSBarry Smith           color = PETSC_DRAW_BLUE;
926f1af5d2fSBarry Smith         } else {
927f1af5d2fSBarry Smith           continue;
928f1af5d2fSBarry Smith         }
929f1af5d2fSBarry Smith #else
930f1af5d2fSBarry Smith         if (v[j*m+i] >  0.) {
931b0a32e0cSBarry Smith           color = PETSC_DRAW_RED;
932f1af5d2fSBarry Smith         } else if (v[j*m+i] <  0.) {
933b0a32e0cSBarry Smith           color = PETSC_DRAW_BLUE;
934f1af5d2fSBarry Smith         } else {
935f1af5d2fSBarry Smith           continue;
936f1af5d2fSBarry Smith         }
937f1af5d2fSBarry Smith #endif
938b0a32e0cSBarry Smith         ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr);
939f1af5d2fSBarry Smith       }
940f1af5d2fSBarry Smith     }
941f1af5d2fSBarry Smith   } else {
942f1af5d2fSBarry Smith     /* use contour shading to indicate magnitude of values */
943f1af5d2fSBarry Smith     /* first determine max of all nonzero values */
944f1af5d2fSBarry Smith     for(i = 0; i < m*n; i++) {
945f1af5d2fSBarry Smith       if (PetscAbsScalar(v[i]) > maxv) maxv = PetscAbsScalar(v[i]);
946f1af5d2fSBarry Smith     }
947b0a32e0cSBarry Smith     scale = (245.0 - PETSC_DRAW_BASIC_COLORS)/maxv;
948b0a32e0cSBarry Smith     ierr  = PetscDrawGetPopup(draw,&popup);CHKERRQ(ierr);
949b0a32e0cSBarry Smith     if (popup) {ierr  = PetscDrawScalePopup(popup,0.0,maxv);CHKERRQ(ierr);}
950f1af5d2fSBarry Smith     for(j = 0; j < n; j++) {
951f1af5d2fSBarry Smith       x_l = j;
952f1af5d2fSBarry Smith       x_r = x_l + 1.0;
953f1af5d2fSBarry Smith       for(i = 0; i < m; i++) {
954f1af5d2fSBarry Smith         y_l   = m - i - 1.0;
955f1af5d2fSBarry Smith         y_r   = y_l + 1.0;
956b0a32e0cSBarry Smith         color = PETSC_DRAW_BASIC_COLORS + (int)(scale*PetscAbsScalar(v[j*m+i]));
957b0a32e0cSBarry Smith         ierr  = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr);
958f1af5d2fSBarry Smith       }
959f1af5d2fSBarry Smith     }
960f1af5d2fSBarry Smith   }
961f1af5d2fSBarry Smith   PetscFunctionReturn(0);
962f1af5d2fSBarry Smith }
963f1af5d2fSBarry Smith 
9644a2ae208SSatish Balay #undef __FUNCT__
9654a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqDense_Draw"
966dfbe8321SBarry Smith PetscErrorCode MatView_SeqDense_Draw(Mat A,PetscViewer viewer)
967f1af5d2fSBarry Smith {
968b0a32e0cSBarry Smith   PetscDraw  draw;
969f1af5d2fSBarry Smith   PetscTruth isnull;
970329f5518SBarry Smith   PetscReal  xr,yr,xl,yl,h,w;
971dfbe8321SBarry Smith   PetscErrorCode ierr;
972f1af5d2fSBarry Smith 
973f1af5d2fSBarry Smith   PetscFunctionBegin;
974b0a32e0cSBarry Smith   ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
975b0a32e0cSBarry Smith   ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
976f1af5d2fSBarry Smith   if (isnull == PETSC_TRUE) PetscFunctionReturn(0);
977f1af5d2fSBarry Smith 
978f1af5d2fSBarry Smith   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr);
979273d9f13SBarry Smith   xr  = A->n; yr = A->m; h = yr/10.0; w = xr/10.0;
980f1af5d2fSBarry Smith   xr += w;    yr += h;  xl = -w;     yl = -h;
981b0a32e0cSBarry Smith   ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr);
982b0a32e0cSBarry Smith   ierr = PetscDrawZoom(draw,MatView_SeqDense_Draw_Zoom,A);CHKERRQ(ierr);
983f1af5d2fSBarry Smith   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",PETSC_NULL);CHKERRQ(ierr);
984f1af5d2fSBarry Smith   PetscFunctionReturn(0);
985f1af5d2fSBarry Smith }
986f1af5d2fSBarry Smith 
9874a2ae208SSatish Balay #undef __FUNCT__
9884a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqDense"
989dfbe8321SBarry Smith PetscErrorCode MatView_SeqDense(Mat A,PetscViewer viewer)
990932b0c3eSLois Curfman McInnes {
991932b0c3eSLois Curfman McInnes   Mat_SeqDense *a = (Mat_SeqDense*)A->data;
992dfbe8321SBarry Smith   PetscErrorCode ierr;
99332077d6dSBarry Smith   PetscTruth   issocket,iascii,isbinary,isdraw;
994932b0c3eSLois Curfman McInnes 
9953a40ed3dSBarry Smith   PetscFunctionBegin;
996b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
99732077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
998fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
999fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
10000f5bd95cSBarry Smith 
10010f5bd95cSBarry Smith   if (issocket) {
1002634064b4SBarry Smith     if (a->lda>A->m) SETERRQ(PETSC_ERR_SUP,"Case can not handle LDA");
1003b0a32e0cSBarry Smith     ierr = PetscViewerSocketPutScalar(viewer,A->m,A->n,a->v);CHKERRQ(ierr);
100432077d6dSBarry Smith   } else if (iascii) {
10053a40ed3dSBarry Smith     ierr = MatView_SeqDense_ASCII(A,viewer);CHKERRQ(ierr);
10060f5bd95cSBarry Smith   } else if (isbinary) {
10073a40ed3dSBarry Smith     ierr = MatView_SeqDense_Binary(A,viewer);CHKERRQ(ierr);
1008f1af5d2fSBarry Smith   } else if (isdraw) {
1009f1af5d2fSBarry Smith     ierr = MatView_SeqDense_Draw(A,viewer);CHKERRQ(ierr);
10105cd90555SBarry Smith   } else {
1011958c9bccSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by dense matrix",((PetscObject)viewer)->type_name);
1012932b0c3eSLois Curfman McInnes   }
10133a40ed3dSBarry Smith   PetscFunctionReturn(0);
1014932b0c3eSLois Curfman McInnes }
1015289bc588SBarry Smith 
10164a2ae208SSatish Balay #undef __FUNCT__
10174a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_SeqDense"
1018dfbe8321SBarry Smith PetscErrorCode MatDestroy_SeqDense(Mat mat)
1019289bc588SBarry Smith {
1020ec8511deSBarry Smith   Mat_SeqDense *l = (Mat_SeqDense*)mat->data;
1021dfbe8321SBarry Smith   PetscErrorCode ierr;
102290f02eecSBarry Smith 
10233a40ed3dSBarry Smith   PetscFunctionBegin;
1024aa482453SBarry Smith #if defined(PETSC_USE_LOG)
102577431f27SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows %D Cols %D",mat->m,mat->n);
1026a5a9c739SBarry Smith #endif
1027606d414cSSatish Balay   if (l->pivots) {ierr = PetscFree(l->pivots);CHKERRQ(ierr);}
1028606d414cSSatish Balay   if (!l->user_alloc) {ierr = PetscFree(l->v);CHKERRQ(ierr);}
1029606d414cSSatish Balay   ierr = PetscFree(l);CHKERRQ(ierr);
1030901853e0SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatSeqDenseSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
10313a40ed3dSBarry Smith   PetscFunctionReturn(0);
1032289bc588SBarry Smith }
1033289bc588SBarry Smith 
10344a2ae208SSatish Balay #undef __FUNCT__
10354a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_SeqDense"
1036dfbe8321SBarry Smith PetscErrorCode MatTranspose_SeqDense(Mat A,Mat *matout)
1037289bc588SBarry Smith {
1038c0bbcb79SLois Curfman McInnes   Mat_SeqDense *mat = (Mat_SeqDense*)A->data;
10396849ba73SBarry Smith   PetscErrorCode ierr;
10406849ba73SBarry Smith   int          k,j,m,n,M;
104187828ca2SBarry Smith   PetscScalar  *v,tmp;
104248b35521SBarry Smith 
10433a40ed3dSBarry Smith   PetscFunctionBegin;
10441b807ce4Svictorle   v = mat->v; m = A->m; M = mat->lda; n = A->n;
10457c922b88SBarry Smith   if (!matout) { /* in place transpose */
1046a5ce6ee0Svictorle     if (m != n) {
1047634064b4SBarry Smith       SETERRQ(PETSC_ERR_SUP,"Can not transpose non-square matrix in place");
1048d64ed03dSBarry Smith     } else {
1049d3e5ee88SLois Curfman McInnes       for (j=0; j<m; j++) {
1050289bc588SBarry Smith         for (k=0; k<j; k++) {
10511b807ce4Svictorle           tmp = v[j + k*M];
10521b807ce4Svictorle           v[j + k*M] = v[k + j*M];
10531b807ce4Svictorle           v[k + j*M] = tmp;
1054289bc588SBarry Smith         }
1055289bc588SBarry Smith       }
1056d64ed03dSBarry Smith     }
10573a40ed3dSBarry Smith   } else { /* out-of-place transpose */
1058d3e5ee88SLois Curfman McInnes     Mat          tmat;
1059ec8511deSBarry Smith     Mat_SeqDense *tmatd;
106087828ca2SBarry Smith     PetscScalar  *v2;
1061ea709b57SSatish Balay 
10625c5985e7SKris Buschelman     ierr  = MatCreate(A->comm,A->n,A->m,A->n,A->m,&tmat);CHKERRQ(ierr);
10635c5985e7SKris Buschelman     ierr  = MatSetType(tmat,A->type_name);CHKERRQ(ierr);
10645c5985e7SKris Buschelman     ierr  = MatSeqDenseSetPreallocation(tmat,PETSC_NULL);CHKERRQ(ierr);
1065ec8511deSBarry Smith     tmatd = (Mat_SeqDense*)tmat->data;
10660de55854SLois Curfman McInnes     v = mat->v; v2 = tmatd->v;
1067d3e5ee88SLois Curfman McInnes     for (j=0; j<n; j++) {
10681b807ce4Svictorle       for (k=0; k<m; k++) v2[j + k*n] = v[k + j*M];
1069d3e5ee88SLois Curfman McInnes     }
10706d4a8577SBarry Smith     ierr = MatAssemblyBegin(tmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
10716d4a8577SBarry Smith     ierr = MatAssemblyEnd(tmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1072d3e5ee88SLois Curfman McInnes     *matout = tmat;
107348b35521SBarry Smith   }
10743a40ed3dSBarry Smith   PetscFunctionReturn(0);
1075289bc588SBarry Smith }
1076289bc588SBarry Smith 
10774a2ae208SSatish Balay #undef __FUNCT__
10784a2ae208SSatish Balay #define __FUNCT__ "MatEqual_SeqDense"
1079dfbe8321SBarry Smith PetscErrorCode MatEqual_SeqDense(Mat A1,Mat A2,PetscTruth *flg)
1080289bc588SBarry Smith {
1081c0bbcb79SLois Curfman McInnes   Mat_SeqDense *mat1 = (Mat_SeqDense*)A1->data;
1082c0bbcb79SLois Curfman McInnes   Mat_SeqDense *mat2 = (Mat_SeqDense*)A2->data;
1083a43ee2ecSKris Buschelman   int          i,j;
108487828ca2SBarry Smith   PetscScalar  *v1 = mat1->v,*v2 = mat2->v;
10859ea5d5aeSSatish Balay 
10863a40ed3dSBarry Smith   PetscFunctionBegin;
1087273d9f13SBarry Smith   if (A1->m != A2->m) {*flg = PETSC_FALSE; PetscFunctionReturn(0);}
1088273d9f13SBarry Smith   if (A1->n != A2->n) {*flg = PETSC_FALSE; PetscFunctionReturn(0);}
10891b807ce4Svictorle   for (i=0; i<A1->m; i++) {
10901b807ce4Svictorle     v1 = mat1->v+i; v2 = mat2->v+i;
10911b807ce4Svictorle     for (j=0; j<A1->n; j++) {
10923a40ed3dSBarry Smith       if (*v1 != *v2) {*flg = PETSC_FALSE; PetscFunctionReturn(0);}
10931b807ce4Svictorle       v1 += mat1->lda; v2 += mat2->lda;
10941b807ce4Svictorle     }
1095289bc588SBarry Smith   }
109677c4ece6SBarry Smith   *flg = PETSC_TRUE;
10973a40ed3dSBarry Smith   PetscFunctionReturn(0);
1098289bc588SBarry Smith }
1099289bc588SBarry Smith 
11004a2ae208SSatish Balay #undef __FUNCT__
11014a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_SeqDense"
1102dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_SeqDense(Mat A,Vec v)
1103289bc588SBarry Smith {
1104c0bbcb79SLois Curfman McInnes   Mat_SeqDense *mat = (Mat_SeqDense*)A->data;
1105dfbe8321SBarry Smith   PetscErrorCode ierr;
1106dfbe8321SBarry Smith   int          i,n,len;
110787828ca2SBarry Smith   PetscScalar  *x,zero = 0.0;
110844cd7ae7SLois Curfman McInnes 
11093a40ed3dSBarry Smith   PetscFunctionBegin;
11107a97a34bSBarry Smith   ierr = VecSet(&zero,v);CHKERRQ(ierr);
11117a97a34bSBarry Smith   ierr = VecGetSize(v,&n);CHKERRQ(ierr);
11121ebc52fbSHong Zhang   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
1113273d9f13SBarry Smith   len = PetscMin(A->m,A->n);
1114273d9f13SBarry Smith   if (n != A->m) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec");
111544cd7ae7SLois Curfman McInnes   for (i=0; i<len; i++) {
11161b807ce4Svictorle     x[i] = mat->v[i*mat->lda + i];
1117289bc588SBarry Smith   }
11181ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
11193a40ed3dSBarry Smith   PetscFunctionReturn(0);
1120289bc588SBarry Smith }
1121289bc588SBarry Smith 
11224a2ae208SSatish Balay #undef __FUNCT__
11234a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_SeqDense"
1124dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_SeqDense(Mat A,Vec ll,Vec rr)
1125289bc588SBarry Smith {
1126c0bbcb79SLois Curfman McInnes   Mat_SeqDense *mat = (Mat_SeqDense*)A->data;
112787828ca2SBarry Smith   PetscScalar  *l,*r,x,*v;
1128dfbe8321SBarry Smith   PetscErrorCode ierr;
1129dfbe8321SBarry Smith   int          i,j,m = A->m,n = A->n;
113055659b69SBarry Smith 
11313a40ed3dSBarry Smith   PetscFunctionBegin;
113228988994SBarry Smith   if (ll) {
11337a97a34bSBarry Smith     ierr = VecGetSize(ll,&m);CHKERRQ(ierr);
11341ebc52fbSHong Zhang     ierr = VecGetArray(ll,&l);CHKERRQ(ierr);
1135273d9f13SBarry Smith     if (m != A->m) SETERRQ(PETSC_ERR_ARG_SIZ,"Left scaling vec wrong size");
1136da3a660dSBarry Smith     for (i=0; i<m; i++) {
1137da3a660dSBarry Smith       x = l[i];
1138da3a660dSBarry Smith       v = mat->v + i;
1139da3a660dSBarry Smith       for (j=0; j<n; j++) { (*v) *= x; v+= m;}
1140da3a660dSBarry Smith     }
11411ebc52fbSHong Zhang     ierr = VecRestoreArray(ll,&l);CHKERRQ(ierr);
1142b0a32e0cSBarry Smith     PetscLogFlops(n*m);
1143da3a660dSBarry Smith   }
114428988994SBarry Smith   if (rr) {
11457a97a34bSBarry Smith     ierr = VecGetSize(rr,&n);CHKERRQ(ierr);
11461ebc52fbSHong Zhang     ierr = VecGetArray(rr,&r);CHKERRQ(ierr);
1147273d9f13SBarry Smith     if (n != A->n) SETERRQ(PETSC_ERR_ARG_SIZ,"Right scaling vec wrong size");
1148da3a660dSBarry Smith     for (i=0; i<n; i++) {
1149da3a660dSBarry Smith       x = r[i];
1150da3a660dSBarry Smith       v = mat->v + i*m;
1151da3a660dSBarry Smith       for (j=0; j<m; j++) { (*v++) *= x;}
1152da3a660dSBarry Smith     }
11531ebc52fbSHong Zhang     ierr = VecRestoreArray(rr,&r);CHKERRQ(ierr);
1154b0a32e0cSBarry Smith     PetscLogFlops(n*m);
1155da3a660dSBarry Smith   }
11563a40ed3dSBarry Smith   PetscFunctionReturn(0);
1157289bc588SBarry Smith }
1158289bc588SBarry Smith 
11594a2ae208SSatish Balay #undef __FUNCT__
11604a2ae208SSatish Balay #define __FUNCT__ "MatNorm_SeqDense"
1161dfbe8321SBarry Smith PetscErrorCode MatNorm_SeqDense(Mat A,NormType type,PetscReal *nrm)
1162289bc588SBarry Smith {
1163c0bbcb79SLois Curfman McInnes   Mat_SeqDense *mat = (Mat_SeqDense*)A->data;
116487828ca2SBarry Smith   PetscScalar  *v = mat->v;
1165329f5518SBarry Smith   PetscReal    sum = 0.0;
1166a5ce6ee0Svictorle   int          lda=mat->lda,m=A->m,i,j;
116755659b69SBarry Smith 
11683a40ed3dSBarry Smith   PetscFunctionBegin;
1169289bc588SBarry Smith   if (type == NORM_FROBENIUS) {
1170a5ce6ee0Svictorle     if (lda>m) {
1171a5ce6ee0Svictorle       for (j=0; j<A->n; j++) {
1172a5ce6ee0Svictorle 	v = mat->v+j*lda;
1173a5ce6ee0Svictorle 	for (i=0; i<m; i++) {
1174a5ce6ee0Svictorle #if defined(PETSC_USE_COMPLEX)
1175a5ce6ee0Svictorle 	  sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
1176a5ce6ee0Svictorle #else
1177a5ce6ee0Svictorle 	  sum += (*v)*(*v); v++;
1178a5ce6ee0Svictorle #endif
1179a5ce6ee0Svictorle 	}
1180a5ce6ee0Svictorle       }
1181a5ce6ee0Svictorle     } else {
1182273d9f13SBarry Smith       for (i=0; i<A->n*A->m; i++) {
1183aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
1184329f5518SBarry Smith 	sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
1185289bc588SBarry Smith #else
1186289bc588SBarry Smith 	sum += (*v)*(*v); v++;
1187289bc588SBarry Smith #endif
1188289bc588SBarry Smith       }
1189a5ce6ee0Svictorle     }
1190064f8208SBarry Smith     *nrm = sqrt(sum);
1191b0a32e0cSBarry Smith     PetscLogFlops(2*A->n*A->m);
11923a40ed3dSBarry Smith   } else if (type == NORM_1) {
1193064f8208SBarry Smith     *nrm = 0.0;
1194273d9f13SBarry Smith     for (j=0; j<A->n; j++) {
11951b807ce4Svictorle       v = mat->v + j*mat->lda;
1196289bc588SBarry Smith       sum = 0.0;
1197273d9f13SBarry Smith       for (i=0; i<A->m; i++) {
119833a8263dSBarry Smith         sum += PetscAbsScalar(*v);  v++;
1199289bc588SBarry Smith       }
1200064f8208SBarry Smith       if (sum > *nrm) *nrm = sum;
1201289bc588SBarry Smith     }
1202b0a32e0cSBarry Smith     PetscLogFlops(A->n*A->m);
12033a40ed3dSBarry Smith   } else if (type == NORM_INFINITY) {
1204064f8208SBarry Smith     *nrm = 0.0;
1205273d9f13SBarry Smith     for (j=0; j<A->m; j++) {
1206289bc588SBarry Smith       v = mat->v + j;
1207289bc588SBarry Smith       sum = 0.0;
1208273d9f13SBarry Smith       for (i=0; i<A->n; i++) {
12091b807ce4Svictorle         sum += PetscAbsScalar(*v); v += mat->lda;
1210289bc588SBarry Smith       }
1211064f8208SBarry Smith       if (sum > *nrm) *nrm = sum;
1212289bc588SBarry Smith     }
1213b0a32e0cSBarry Smith     PetscLogFlops(A->n*A->m);
12143a40ed3dSBarry Smith   } else {
121529bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"No two norm");
1216289bc588SBarry Smith   }
12173a40ed3dSBarry Smith   PetscFunctionReturn(0);
1218289bc588SBarry Smith }
1219289bc588SBarry Smith 
12204a2ae208SSatish Balay #undef __FUNCT__
12214a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_SeqDense"
1222dfbe8321SBarry Smith PetscErrorCode MatSetOption_SeqDense(Mat A,MatOption op)
1223289bc588SBarry Smith {
1224c0bbcb79SLois Curfman McInnes   Mat_SeqDense *aij = (Mat_SeqDense*)A->data;
122567e560aaSBarry Smith 
12263a40ed3dSBarry Smith   PetscFunctionBegin;
1227b5a2b587SKris Buschelman   switch (op) {
1228b5a2b587SKris Buschelman   case MAT_ROW_ORIENTED:
1229b5a2b587SKris Buschelman     aij->roworiented = PETSC_TRUE;
1230b5a2b587SKris Buschelman     break;
1231b5a2b587SKris Buschelman   case MAT_COLUMN_ORIENTED:
1232b5a2b587SKris Buschelman     aij->roworiented = PETSC_FALSE;
1233b5a2b587SKris Buschelman     break;
1234b5a2b587SKris Buschelman   case MAT_ROWS_SORTED:
1235b5a2b587SKris Buschelman   case MAT_ROWS_UNSORTED:
1236b5a2b587SKris Buschelman   case MAT_COLUMNS_SORTED:
1237b5a2b587SKris Buschelman   case MAT_COLUMNS_UNSORTED:
1238b5a2b587SKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
1239b5a2b587SKris Buschelman   case MAT_YES_NEW_NONZERO_LOCATIONS:
1240b5a2b587SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
1241b5a2b587SKris Buschelman   case MAT_NO_NEW_DIAGONALS:
1242b5a2b587SKris Buschelman   case MAT_YES_NEW_DIAGONALS:
1243b5a2b587SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1244b5a2b587SKris Buschelman   case MAT_USE_HASH_TABLE:
1245b0a32e0cSBarry Smith     PetscLogInfo(A,"MatSetOption_SeqDense:Option ignored\n");
1246b5a2b587SKris Buschelman     break;
124777e54ba9SKris Buschelman   case MAT_SYMMETRIC:
124877e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
12499a4540c5SBarry Smith   case MAT_NOT_SYMMETRIC:
12509a4540c5SBarry Smith   case MAT_NOT_STRUCTURALLY_SYMMETRIC:
12519a4540c5SBarry Smith   case MAT_HERMITIAN:
12529a4540c5SBarry Smith   case MAT_NOT_HERMITIAN:
12539a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
12549a4540c5SBarry Smith   case MAT_NOT_SYMMETRY_ETERNAL:
125577e54ba9SKris Buschelman     break;
1256b5a2b587SKris Buschelman   default:
125729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"unknown option");
12583a40ed3dSBarry Smith   }
12593a40ed3dSBarry Smith   PetscFunctionReturn(0);
1260289bc588SBarry Smith }
1261289bc588SBarry Smith 
12624a2ae208SSatish Balay #undef __FUNCT__
12634a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_SeqDense"
1264dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_SeqDense(Mat A)
12656f0a148fSBarry Smith {
1266ec8511deSBarry Smith   Mat_SeqDense *l = (Mat_SeqDense*)A->data;
12676849ba73SBarry Smith   PetscErrorCode ierr;
12686849ba73SBarry Smith   int          lda=l->lda,m=A->m,j;
12693a40ed3dSBarry Smith 
12703a40ed3dSBarry Smith   PetscFunctionBegin;
1271a5ce6ee0Svictorle   if (lda>m) {
1272a5ce6ee0Svictorle     for (j=0; j<A->n; j++) {
1273a5ce6ee0Svictorle       ierr = PetscMemzero(l->v+j*lda,m*sizeof(PetscScalar));CHKERRQ(ierr);
1274a5ce6ee0Svictorle     }
1275a5ce6ee0Svictorle   } else {
127687828ca2SBarry Smith     ierr = PetscMemzero(l->v,A->m*A->n*sizeof(PetscScalar));CHKERRQ(ierr);
1277a5ce6ee0Svictorle   }
12783a40ed3dSBarry Smith   PetscFunctionReturn(0);
12796f0a148fSBarry Smith }
12806f0a148fSBarry Smith 
12814a2ae208SSatish Balay #undef __FUNCT__
12824a2ae208SSatish Balay #define __FUNCT__ "MatGetBlockSize_SeqDense"
1283dfbe8321SBarry Smith PetscErrorCode MatGetBlockSize_SeqDense(Mat A,int *bs)
12844e220ebcSLois Curfman McInnes {
12853a40ed3dSBarry Smith   PetscFunctionBegin;
12864e220ebcSLois Curfman McInnes   *bs = 1;
12873a40ed3dSBarry Smith   PetscFunctionReturn(0);
12884e220ebcSLois Curfman McInnes }
12894e220ebcSLois Curfman McInnes 
12904a2ae208SSatish Balay #undef __FUNCT__
12914a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqDense"
1292dfbe8321SBarry Smith PetscErrorCode MatZeroRows_SeqDense(Mat A,IS is,const PetscScalar *diag)
12936f0a148fSBarry Smith {
1294ec8511deSBarry Smith   Mat_SeqDense *l = (Mat_SeqDense*)A->data;
12956849ba73SBarry Smith   PetscErrorCode ierr;
12966849ba73SBarry Smith   int          n = A->n,i,j,N,*rows;
129787828ca2SBarry Smith   PetscScalar  *slot;
129855659b69SBarry Smith 
12993a40ed3dSBarry Smith   PetscFunctionBegin;
1300e03a110bSBarry Smith   ierr = ISGetLocalSize(is,&N);CHKERRQ(ierr);
130178b31e54SBarry Smith   ierr = ISGetIndices(is,&rows);CHKERRQ(ierr);
13026f0a148fSBarry Smith   for (i=0; i<N; i++) {
13036f0a148fSBarry Smith     slot = l->v + rows[i];
13046f0a148fSBarry Smith     for (j=0; j<n; j++) { *slot = 0.0; slot += n;}
13056f0a148fSBarry Smith   }
13066f0a148fSBarry Smith   if (diag) {
13076f0a148fSBarry Smith     for (i=0; i<N; i++) {
13086f0a148fSBarry Smith       slot = l->v + (n+1)*rows[i];
1309260925b8SBarry Smith       *slot = *diag;
13106f0a148fSBarry Smith     }
13116f0a148fSBarry Smith   }
1312260925b8SBarry Smith   ISRestoreIndices(is,&rows);
13133a40ed3dSBarry Smith   PetscFunctionReturn(0);
13146f0a148fSBarry Smith }
1315557bce09SLois Curfman McInnes 
13164a2ae208SSatish Balay #undef __FUNCT__
13174a2ae208SSatish Balay #define __FUNCT__ "MatGetArray_SeqDense"
1318dfbe8321SBarry Smith PetscErrorCode MatGetArray_SeqDense(Mat A,PetscScalar *array[])
131964e87e97SBarry Smith {
1320c0bbcb79SLois Curfman McInnes   Mat_SeqDense *mat = (Mat_SeqDense*)A->data;
13213a40ed3dSBarry Smith 
13223a40ed3dSBarry Smith   PetscFunctionBegin;
132364e87e97SBarry Smith   *array = mat->v;
13243a40ed3dSBarry Smith   PetscFunctionReturn(0);
132564e87e97SBarry Smith }
13260754003eSLois Curfman McInnes 
13274a2ae208SSatish Balay #undef __FUNCT__
13284a2ae208SSatish Balay #define __FUNCT__ "MatRestoreArray_SeqDense"
1329dfbe8321SBarry Smith PetscErrorCode MatRestoreArray_SeqDense(Mat A,PetscScalar *array[])
1330ff14e315SSatish Balay {
13313a40ed3dSBarry Smith   PetscFunctionBegin;
133209b544d4SBarry Smith   *array = 0; /* user cannot accidently use the array later */
13333a40ed3dSBarry Smith   PetscFunctionReturn(0);
1334ff14e315SSatish Balay }
13350754003eSLois Curfman McInnes 
13364a2ae208SSatish Balay #undef __FUNCT__
13374a2ae208SSatish Balay #define __FUNCT__ "MatGetSubMatrix_SeqDense"
13386849ba73SBarry Smith static PetscErrorCode MatGetSubMatrix_SeqDense(Mat A,IS isrow,IS iscol,int cs,MatReuse scall,Mat *B)
13390754003eSLois Curfman McInnes {
1340c0bbcb79SLois Curfman McInnes   Mat_SeqDense *mat = (Mat_SeqDense*)A->data;
13416849ba73SBarry Smith   PetscErrorCode ierr;
13426849ba73SBarry Smith   int          i,j,m = A->m,*irow,*icol,nrows,ncols;
134387828ca2SBarry Smith   PetscScalar  *av,*bv,*v = mat->v;
13440754003eSLois Curfman McInnes   Mat          newmat;
13450754003eSLois Curfman McInnes 
13463a40ed3dSBarry Smith   PetscFunctionBegin;
134778b31e54SBarry Smith   ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr);
134878b31e54SBarry Smith   ierr = ISGetIndices(iscol,&icol);CHKERRQ(ierr);
1349e03a110bSBarry Smith   ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr);
1350e03a110bSBarry Smith   ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr);
13510754003eSLois Curfman McInnes 
1352182d2002SSatish Balay   /* Check submatrixcall */
1353182d2002SSatish Balay   if (scall == MAT_REUSE_MATRIX) {
1354182d2002SSatish Balay     int n_cols,n_rows;
1355182d2002SSatish Balay     ierr = MatGetSize(*B,&n_rows,&n_cols);CHKERRQ(ierr);
135629bbc08cSBarry Smith     if (n_rows != nrows || n_cols != ncols) SETERRQ(PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size");
1357182d2002SSatish Balay     newmat = *B;
1358182d2002SSatish Balay   } else {
13590754003eSLois Curfman McInnes     /* Create and fill new matrix */
13605c5985e7SKris Buschelman     ierr = MatCreate(A->comm,nrows,ncols,nrows,ncols,&newmat);CHKERRQ(ierr);
13615c5985e7SKris Buschelman     ierr = MatSetType(newmat,A->type_name);CHKERRQ(ierr);
13625c5985e7SKris Buschelman     ierr = MatSeqDenseSetPreallocation(newmat,PETSC_NULL);CHKERRQ(ierr);
1363182d2002SSatish Balay   }
1364182d2002SSatish Balay 
1365182d2002SSatish Balay   /* Now extract the data pointers and do the copy,column at a time */
1366182d2002SSatish Balay   bv = ((Mat_SeqDense*)newmat->data)->v;
1367182d2002SSatish Balay 
1368182d2002SSatish Balay   for (i=0; i<ncols; i++) {
1369182d2002SSatish Balay     av = v + m*icol[i];
1370182d2002SSatish Balay     for (j=0; j<nrows; j++) {
1371182d2002SSatish Balay       *bv++ = av[irow[j]];
13720754003eSLois Curfman McInnes     }
13730754003eSLois Curfman McInnes   }
1374182d2002SSatish Balay 
1375182d2002SSatish Balay   /* Assemble the matrices so that the correct flags are set */
13766d4a8577SBarry Smith   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
13776d4a8577SBarry Smith   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
13780754003eSLois Curfman McInnes 
13790754003eSLois Curfman McInnes   /* Free work space */
138078b31e54SBarry Smith   ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr);
138178b31e54SBarry Smith   ierr = ISRestoreIndices(iscol,&icol);CHKERRQ(ierr);
1382182d2002SSatish Balay   *B = newmat;
13833a40ed3dSBarry Smith   PetscFunctionReturn(0);
13840754003eSLois Curfman McInnes }
13850754003eSLois Curfman McInnes 
13864a2ae208SSatish Balay #undef __FUNCT__
13874a2ae208SSatish Balay #define __FUNCT__ "MatGetSubMatrices_SeqDense"
1388dfbe8321SBarry Smith PetscErrorCode MatGetSubMatrices_SeqDense(Mat A,int n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
1389905e6a2fSBarry Smith {
13906849ba73SBarry Smith   PetscErrorCode ierr;
13916849ba73SBarry Smith   int i;
1392905e6a2fSBarry Smith 
13933a40ed3dSBarry Smith   PetscFunctionBegin;
1394905e6a2fSBarry Smith   if (scall == MAT_INITIAL_MATRIX) {
1395b0a32e0cSBarry Smith     ierr = PetscMalloc((n+1)*sizeof(Mat),B);CHKERRQ(ierr);
1396905e6a2fSBarry Smith   }
1397905e6a2fSBarry Smith 
1398905e6a2fSBarry Smith   for (i=0; i<n; i++) {
13996a6a5d1dSBarry Smith     ierr = MatGetSubMatrix_SeqDense(A,irow[i],icol[i],PETSC_DECIDE,scall,&(*B)[i]);CHKERRQ(ierr);
1400905e6a2fSBarry Smith   }
14013a40ed3dSBarry Smith   PetscFunctionReturn(0);
1402905e6a2fSBarry Smith }
1403905e6a2fSBarry Smith 
14044a2ae208SSatish Balay #undef __FUNCT__
14054a2ae208SSatish Balay #define __FUNCT__ "MatCopy_SeqDense"
1406dfbe8321SBarry Smith PetscErrorCode MatCopy_SeqDense(Mat A,Mat B,MatStructure str)
14074b0e389bSBarry Smith {
14084b0e389bSBarry Smith   Mat_SeqDense *a = (Mat_SeqDense*)A->data,*b = (Mat_SeqDense *)B->data;
14096849ba73SBarry Smith   PetscErrorCode ierr;
14106849ba73SBarry Smith   int          lda1=a->lda,lda2=b->lda, m=A->m,n=A->n, j;
14113a40ed3dSBarry Smith 
14123a40ed3dSBarry Smith   PetscFunctionBegin;
141333f4a19fSKris Buschelman   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
141433f4a19fSKris Buschelman   if (A->ops->copy != B->ops->copy) {
1415cb5b572fSBarry Smith     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
14163a40ed3dSBarry Smith     PetscFunctionReturn(0);
14173a40ed3dSBarry Smith   }
14180dbb7854Svictorle   if (m != B->m || n != B->n) SETERRQ(PETSC_ERR_ARG_SIZ,"size(B) != size(A)");
1419a5ce6ee0Svictorle   if (lda1>m || lda2>m) {
14200dbb7854Svictorle     for (j=0; j<n; j++) {
1421a5ce6ee0Svictorle       ierr = PetscMemcpy(b->v+j*lda2,a->v+j*lda1,m*sizeof(PetscScalar));CHKERRQ(ierr);
1422a5ce6ee0Svictorle     }
1423a5ce6ee0Svictorle   } else {
142487828ca2SBarry Smith     ierr = PetscMemcpy(b->v,a->v,A->m*A->n*sizeof(PetscScalar));CHKERRQ(ierr);
1425a5ce6ee0Svictorle   }
1426273d9f13SBarry Smith   PetscFunctionReturn(0);
1427273d9f13SBarry Smith }
1428273d9f13SBarry Smith 
14294a2ae208SSatish Balay #undef __FUNCT__
14304a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_SeqDense"
1431dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_SeqDense(Mat A)
1432273d9f13SBarry Smith {
1433dfbe8321SBarry Smith   PetscErrorCode ierr;
1434273d9f13SBarry Smith 
1435273d9f13SBarry Smith   PetscFunctionBegin;
1436273d9f13SBarry Smith   ierr =  MatSeqDenseSetPreallocation(A,0);CHKERRQ(ierr);
14373a40ed3dSBarry Smith   PetscFunctionReturn(0);
14384b0e389bSBarry Smith }
14394b0e389bSBarry Smith 
1440289bc588SBarry Smith /* -------------------------------------------------------------------*/
1441a5ae1ecdSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_SeqDense,
1442905e6a2fSBarry Smith        MatGetRow_SeqDense,
1443905e6a2fSBarry Smith        MatRestoreRow_SeqDense,
1444905e6a2fSBarry Smith        MatMult_SeqDense,
144597304618SKris Buschelman /* 4*/ MatMultAdd_SeqDense,
14467c922b88SBarry Smith        MatMultTranspose_SeqDense,
14477c922b88SBarry Smith        MatMultTransposeAdd_SeqDense,
1448905e6a2fSBarry Smith        MatSolve_SeqDense,
1449905e6a2fSBarry Smith        MatSolveAdd_SeqDense,
14507c922b88SBarry Smith        MatSolveTranspose_SeqDense,
145197304618SKris Buschelman /*10*/ MatSolveTransposeAdd_SeqDense,
1452905e6a2fSBarry Smith        MatLUFactor_SeqDense,
1453905e6a2fSBarry Smith        MatCholeskyFactor_SeqDense,
1454ec8511deSBarry Smith        MatRelax_SeqDense,
1455ec8511deSBarry Smith        MatTranspose_SeqDense,
145697304618SKris Buschelman /*15*/ MatGetInfo_SeqDense,
1457905e6a2fSBarry Smith        MatEqual_SeqDense,
1458905e6a2fSBarry Smith        MatGetDiagonal_SeqDense,
1459905e6a2fSBarry Smith        MatDiagonalScale_SeqDense,
1460905e6a2fSBarry Smith        MatNorm_SeqDense,
146197304618SKris Buschelman /*20*/ 0,
1462905e6a2fSBarry Smith        0,
1463905e6a2fSBarry Smith        0,
1464905e6a2fSBarry Smith        MatSetOption_SeqDense,
1465905e6a2fSBarry Smith        MatZeroEntries_SeqDense,
146697304618SKris Buschelman /*25*/ MatZeroRows_SeqDense,
1467905e6a2fSBarry Smith        MatLUFactorSymbolic_SeqDense,
1468905e6a2fSBarry Smith        MatLUFactorNumeric_SeqDense,
1469905e6a2fSBarry Smith        MatCholeskyFactorSymbolic_SeqDense,
1470905e6a2fSBarry Smith        MatCholeskyFactorNumeric_SeqDense,
147197304618SKris Buschelman /*30*/ MatSetUpPreallocation_SeqDense,
1472273d9f13SBarry Smith        0,
1473905e6a2fSBarry Smith        0,
1474905e6a2fSBarry Smith        MatGetArray_SeqDense,
1475905e6a2fSBarry Smith        MatRestoreArray_SeqDense,
147697304618SKris Buschelman /*35*/ MatDuplicate_SeqDense,
1477a5ae1ecdSBarry Smith        0,
1478a5ae1ecdSBarry Smith        0,
1479a5ae1ecdSBarry Smith        0,
1480a5ae1ecdSBarry Smith        0,
148197304618SKris Buschelman /*40*/ MatAXPY_SeqDense,
1482a5ae1ecdSBarry Smith        MatGetSubMatrices_SeqDense,
1483a5ae1ecdSBarry Smith        0,
14844b0e389bSBarry Smith        MatGetValues_SeqDense,
1485a5ae1ecdSBarry Smith        MatCopy_SeqDense,
148697304618SKris Buschelman /*45*/ 0,
1487a5ae1ecdSBarry Smith        MatScale_SeqDense,
1488a5ae1ecdSBarry Smith        0,
1489a5ae1ecdSBarry Smith        0,
1490a5ae1ecdSBarry Smith        0,
149197304618SKris Buschelman /*50*/ MatGetBlockSize_SeqDense,
1492a5ae1ecdSBarry Smith        0,
1493a5ae1ecdSBarry Smith        0,
1494a5ae1ecdSBarry Smith        0,
1495a5ae1ecdSBarry Smith        0,
149697304618SKris Buschelman /*55*/ 0,
1497a5ae1ecdSBarry Smith        0,
1498a5ae1ecdSBarry Smith        0,
1499a5ae1ecdSBarry Smith        0,
1500a5ae1ecdSBarry Smith        0,
150197304618SKris Buschelman /*60*/ 0,
1502e03a110bSBarry Smith        MatDestroy_SeqDense,
1503e03a110bSBarry Smith        MatView_SeqDense,
150497304618SKris Buschelman        MatGetPetscMaps_Petsc,
150597304618SKris Buschelman        0,
150697304618SKris Buschelman /*65*/ 0,
150797304618SKris Buschelman        0,
150897304618SKris Buschelman        0,
150997304618SKris Buschelman        0,
151097304618SKris Buschelman        0,
151197304618SKris Buschelman /*70*/ 0,
151297304618SKris Buschelman        0,
151397304618SKris Buschelman        0,
151497304618SKris Buschelman        0,
151597304618SKris Buschelman        0,
151697304618SKris Buschelman /*75*/ 0,
151797304618SKris Buschelman        0,
151897304618SKris Buschelman        0,
151997304618SKris Buschelman        0,
152097304618SKris Buschelman        0,
152197304618SKris Buschelman /*80*/ 0,
152297304618SKris Buschelman        0,
152397304618SKris Buschelman        0,
152497304618SKris Buschelman        0,
1525865e5f61SKris Buschelman /*84*/ MatLoad_SeqDense,
1526865e5f61SKris Buschelman        0,
1527865e5f61SKris Buschelman        0,
1528865e5f61SKris Buschelman        0,
1529865e5f61SKris Buschelman        0,
1530865e5f61SKris Buschelman        0,
1531865e5f61SKris Buschelman /*90*/ 0,
1532865e5f61SKris Buschelman        0,
1533865e5f61SKris Buschelman        0,
1534865e5f61SKris Buschelman        0,
1535865e5f61SKris Buschelman        0,
1536865e5f61SKris Buschelman /*95*/ 0,
1537865e5f61SKris Buschelman        0,
1538865e5f61SKris Buschelman        0,
1539865e5f61SKris Buschelman        0};
154090ace30eSBarry Smith 
15414a2ae208SSatish Balay #undef __FUNCT__
15424a2ae208SSatish Balay #define __FUNCT__ "MatCreateSeqDense"
15434b828684SBarry Smith /*@C
1544fafbff53SBarry Smith    MatCreateSeqDense - Creates a sequential dense matrix that
1545d65003e9SLois Curfman McInnes    is stored in column major order (the usual Fortran 77 manner). Many
1546d65003e9SLois Curfman McInnes    of the matrix operations use the BLAS and LAPACK routines.
1547289bc588SBarry Smith 
1548db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
1549db81eaa0SLois Curfman McInnes 
155020563c6bSBarry Smith    Input Parameters:
1551db81eaa0SLois Curfman McInnes +  comm - MPI communicator, set to PETSC_COMM_SELF
15520c775827SLois Curfman McInnes .  m - number of rows
155318f449edSLois Curfman McInnes .  n - number of columns
1554db81eaa0SLois Curfman McInnes -  data - optional location of matrix data.  Set data=PETSC_NULL for PETSc
1555dfc5480cSLois Curfman McInnes    to control all matrix memory allocation.
155620563c6bSBarry Smith 
155720563c6bSBarry Smith    Output Parameter:
155844cd7ae7SLois Curfman McInnes .  A - the matrix
155920563c6bSBarry Smith 
1560b259b22eSLois Curfman McInnes    Notes:
156118f449edSLois Curfman McInnes    The data input variable is intended primarily for Fortran programmers
156218f449edSLois Curfman McInnes    who wish to allocate their own matrix memory space.  Most users should
1563b4fd4287SBarry Smith    set data=PETSC_NULL.
156418f449edSLois Curfman McInnes 
1565027ccd11SLois Curfman McInnes    Level: intermediate
1566027ccd11SLois Curfman McInnes 
1567dbd7a890SLois Curfman McInnes .keywords: dense, matrix, LAPACK, BLAS
1568d65003e9SLois Curfman McInnes 
1569db81eaa0SLois Curfman McInnes .seealso: MatCreate(), MatCreateMPIDense(), MatSetValues()
157020563c6bSBarry Smith @*/
1571dfbe8321SBarry Smith PetscErrorCode MatCreateSeqDense(MPI_Comm comm,int m,int n,PetscScalar *data,Mat *A)
1572289bc588SBarry Smith {
1573dfbe8321SBarry Smith   PetscErrorCode ierr;
15743b2fbd54SBarry Smith 
15753a40ed3dSBarry Smith   PetscFunctionBegin;
1576273d9f13SBarry Smith   ierr = MatCreate(comm,m,n,m,n,A);CHKERRQ(ierr);
1577273d9f13SBarry Smith   ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr);
1578273d9f13SBarry Smith   ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr);
1579273d9f13SBarry Smith   PetscFunctionReturn(0);
1580273d9f13SBarry Smith }
1581273d9f13SBarry Smith 
15824a2ae208SSatish Balay #undef __FUNCT__
15834a2ae208SSatish Balay #define __FUNCT__ "MatSeqDensePreallocation"
1584273d9f13SBarry Smith /*@C
1585273d9f13SBarry Smith    MatSeqDenseSetPreallocation - Sets the array used for storing the matrix elements
1586273d9f13SBarry Smith 
1587273d9f13SBarry Smith    Collective on MPI_Comm
1588273d9f13SBarry Smith 
1589273d9f13SBarry Smith    Input Parameters:
1590273d9f13SBarry Smith +  A - the matrix
1591273d9f13SBarry Smith -  data - the array (or PETSC_NULL)
1592273d9f13SBarry Smith 
1593273d9f13SBarry Smith    Notes:
1594273d9f13SBarry Smith    The data input variable is intended primarily for Fortran programmers
1595273d9f13SBarry Smith    who wish to allocate their own matrix memory space.  Most users should
1596273d9f13SBarry Smith    set data=PETSC_NULL.
1597273d9f13SBarry Smith 
1598273d9f13SBarry Smith    Level: intermediate
1599273d9f13SBarry Smith 
1600273d9f13SBarry Smith .keywords: dense, matrix, LAPACK, BLAS
1601273d9f13SBarry Smith 
1602273d9f13SBarry Smith .seealso: MatCreate(), MatCreateMPIDense(), MatSetValues()
1603273d9f13SBarry Smith @*/
1604dfbe8321SBarry Smith PetscErrorCode MatSeqDenseSetPreallocation(Mat B,PetscScalar data[])
1605273d9f13SBarry Smith {
1606dfbe8321SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscScalar[]);
1607a23d5eceSKris Buschelman 
1608a23d5eceSKris Buschelman   PetscFunctionBegin;
1609a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatSeqDenseSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1610a23d5eceSKris Buschelman   if (f) {
1611a23d5eceSKris Buschelman     ierr = (*f)(B,data);CHKERRQ(ierr);
1612a23d5eceSKris Buschelman   }
1613a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1614a23d5eceSKris Buschelman }
1615a23d5eceSKris Buschelman 
1616a23d5eceSKris Buschelman EXTERN_C_BEGIN
1617a23d5eceSKris Buschelman #undef __FUNCT__
1618a23d5eceSKris Buschelman #define __FUNCT__ "MatSeqDensePreallocation_SeqDense"
1619dfbe8321SBarry Smith PetscErrorCode MatSeqDenseSetPreallocation_SeqDense(Mat B,PetscScalar *data)
1620a23d5eceSKris Buschelman {
1621273d9f13SBarry Smith   Mat_SeqDense *b;
1622dfbe8321SBarry Smith   PetscErrorCode ierr;
1623273d9f13SBarry Smith 
1624273d9f13SBarry Smith   PetscFunctionBegin;
1625273d9f13SBarry Smith   B->preallocated = PETSC_TRUE;
1626273d9f13SBarry Smith   b               = (Mat_SeqDense*)B->data;
1627273d9f13SBarry Smith   if (!data) {
162887828ca2SBarry Smith     ierr          = PetscMalloc((B->m*B->n+1)*sizeof(PetscScalar),&b->v);CHKERRQ(ierr);
162987828ca2SBarry Smith     ierr          = PetscMemzero(b->v,B->m*B->n*sizeof(PetscScalar));CHKERRQ(ierr);
1630273d9f13SBarry Smith     b->user_alloc = PETSC_FALSE;
163187828ca2SBarry Smith     PetscLogObjectMemory(B,B->n*B->m*sizeof(PetscScalar));
1632273d9f13SBarry Smith   } else { /* user-allocated storage */
1633273d9f13SBarry Smith     b->v          = data;
1634273d9f13SBarry Smith     b->user_alloc = PETSC_TRUE;
1635273d9f13SBarry Smith   }
1636273d9f13SBarry Smith   PetscFunctionReturn(0);
1637273d9f13SBarry Smith }
1638a23d5eceSKris Buschelman EXTERN_C_END
1639273d9f13SBarry Smith 
16401b807ce4Svictorle #undef __FUNCT__
16411b807ce4Svictorle #define __FUNCT__ "MatSeqDenseSetLDA"
16421b807ce4Svictorle /*@C
16431b807ce4Svictorle   MatSeqDenseSetLDA - Declare the leading dimension of the user-provided array
16441b807ce4Svictorle 
16451b807ce4Svictorle   Input parameter:
16461b807ce4Svictorle + A - the matrix
16471b807ce4Svictorle - lda - the leading dimension
16481b807ce4Svictorle 
16491b807ce4Svictorle   Notes:
16501b807ce4Svictorle   This routine is to be used in conjunction with MatSeqDenseSetPreallocation;
16511b807ce4Svictorle   it asserts that the preallocation has a leading dimension (the LDA parameter
16521b807ce4Svictorle   of Blas and Lapack fame) larger than M, the first dimension of the matrix.
16531b807ce4Svictorle 
16541b807ce4Svictorle   Level: intermediate
16551b807ce4Svictorle 
16561b807ce4Svictorle .keywords: dense, matrix, LAPACK, BLAS
16571b807ce4Svictorle 
16581b807ce4Svictorle .seealso: MatCreate(), MatCreateSeqDense(), MatSeqDenseSetPreallocation()
16591b807ce4Svictorle @*/
1660dfbe8321SBarry Smith PetscErrorCode MatSeqDenseSetLDA(Mat B,int lda)
16611b807ce4Svictorle {
16621b807ce4Svictorle   Mat_SeqDense *b = (Mat_SeqDense*)B->data;
16631b807ce4Svictorle   PetscFunctionBegin;
166477431f27SBarry Smith   if (lda < B->m) SETERRQ2(PETSC_ERR_ARG_SIZ,"LDA %D must be at least matrix dimension %D",lda,B->m);
16651b807ce4Svictorle   b->lda = lda;
16661b807ce4Svictorle   PetscFunctionReturn(0);
16671b807ce4Svictorle }
16681b807ce4Svictorle 
16690bad9183SKris Buschelman /*MC
1670fafad747SKris Buschelman    MATSEQDENSE - MATSEQDENSE = "seqdense" - A matrix type to be used for sequential dense matrices.
16710bad9183SKris Buschelman 
16720bad9183SKris Buschelman    Options Database Keys:
16730bad9183SKris Buschelman . -mat_type seqdense - sets the matrix type to "seqdense" during a call to MatSetFromOptions()
16740bad9183SKris Buschelman 
16750bad9183SKris Buschelman   Level: beginner
16760bad9183SKris Buschelman 
16770bad9183SKris Buschelman .seealso: MatCreateSeqDense
16780bad9183SKris Buschelman M*/
16790bad9183SKris Buschelman 
1680273d9f13SBarry Smith EXTERN_C_BEGIN
16814a2ae208SSatish Balay #undef __FUNCT__
16824a2ae208SSatish Balay #define __FUNCT__ "MatCreate_SeqDense"
1683dfbe8321SBarry Smith PetscErrorCode MatCreate_SeqDense(Mat B)
1684273d9f13SBarry Smith {
1685273d9f13SBarry Smith   Mat_SeqDense   *b;
1686dfbe8321SBarry Smith   PetscErrorCode ierr;
1687*7c334f02SBarry Smith   PetscMPIInt    size;
1688273d9f13SBarry Smith 
1689273d9f13SBarry Smith   PetscFunctionBegin;
1690273d9f13SBarry Smith   ierr = MPI_Comm_size(B->comm,&size);CHKERRQ(ierr);
169129bbc08cSBarry Smith   if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"Comm must be of size 1");
169255659b69SBarry Smith 
1693273d9f13SBarry Smith   B->m = B->M = PetscMax(B->m,B->M);
1694273d9f13SBarry Smith   B->n = B->N = PetscMax(B->n,B->N);
1695273d9f13SBarry Smith 
1696b0a32e0cSBarry Smith   ierr            = PetscNew(Mat_SeqDense,&b);CHKERRQ(ierr);
1697549d3d68SSatish Balay   ierr            = PetscMemzero(b,sizeof(Mat_SeqDense));CHKERRQ(ierr);
1698549d3d68SSatish Balay   ierr            = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
169944cd7ae7SLois Curfman McInnes   B->factor       = 0;
170090f02eecSBarry Smith   B->mapping      = 0;
1701b0a32e0cSBarry Smith   PetscLogObjectMemory(B,sizeof(struct _p_Mat));
170244cd7ae7SLois Curfman McInnes   B->data         = (void*)b;
170318f449edSLois Curfman McInnes 
17048a124369SBarry Smith   ierr = PetscMapCreateMPI(B->comm,B->m,B->m,&B->rmap);CHKERRQ(ierr);
17058a124369SBarry Smith   ierr = PetscMapCreateMPI(B->comm,B->n,B->n,&B->cmap);CHKERRQ(ierr);
1706a5ae1ecdSBarry Smith 
170744cd7ae7SLois Curfman McInnes   b->pivots       = 0;
1708273d9f13SBarry Smith   b->roworiented  = PETSC_TRUE;
1709273d9f13SBarry Smith   b->v            = 0;
17101b807ce4Svictorle   b->lda          = B->m;
17114e220ebcSLois Curfman McInnes 
1712a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqDenseSetPreallocation_C",
1713a23d5eceSKris Buschelman                                     "MatSeqDenseSetPreallocation_SeqDense",
1714a23d5eceSKris Buschelman                                      MatSeqDenseSetPreallocation_SeqDense);CHKERRQ(ierr);
17153a40ed3dSBarry Smith   PetscFunctionReturn(0);
1716289bc588SBarry Smith }
1717273d9f13SBarry Smith EXTERN_C_END
1718