1be1d678aSKris Buschelman #define PETSCMAT_DLL 2be1d678aSKris Buschelman 367e560aaSBarry Smith /* 467e560aaSBarry Smith Defines the basic matrix operations for sequential dense. 567e560aaSBarry Smith */ 6289bc588SBarry Smith 77c4f633dSBarry Smith #include "../src/mat/impls/dense/seq/dense.h" 8b4c862e0SSatish Balay #include "petscblaslapack.h" 9289bc588SBarry Smith 104a2ae208SSatish Balay #undef __FUNCT__ 114a2ae208SSatish Balay #define __FUNCT__ "MatAXPY_SeqDense" 12f4df32b1SMatthew Knepley PetscErrorCode MatAXPY_SeqDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 131987afe7SBarry Smith { 141987afe7SBarry Smith Mat_SeqDense *x = (Mat_SeqDense*)X->data,*y = (Mat_SeqDense*)Y->data; 15f4df32b1SMatthew Knepley PetscScalar oalpha = alpha; 1613f74950SBarry Smith PetscInt j; 170805154bSBarry Smith PetscBLASInt N,m,ldax,lday,one = 1; 18efee365bSSatish Balay PetscErrorCode ierr; 193a40ed3dSBarry Smith 203a40ed3dSBarry Smith PetscFunctionBegin; 21d0f46423SBarry Smith N = PetscBLASIntCast(X->rmap->n*X->cmap->n); 22d0f46423SBarry Smith m = PetscBLASIntCast(X->rmap->n); 230805154bSBarry Smith ldax = PetscBLASIntCast(x->lda); 240805154bSBarry Smith lday = PetscBLASIntCast(y->lda); 25a5ce6ee0Svictorle if (ldax>m || lday>m) { 26d0f46423SBarry Smith for (j=0; j<X->cmap->n; j++) { 27f4df32b1SMatthew Knepley BLASaxpy_(&m,&oalpha,x->v+j*ldax,&one,y->v+j*lday,&one); 28a5ce6ee0Svictorle } 29a5ce6ee0Svictorle } else { 30f4df32b1SMatthew Knepley BLASaxpy_(&N,&oalpha,x->v,&one,y->v,&one); 31a5ce6ee0Svictorle } 320450473dSBarry Smith ierr = PetscLogFlops(PetscMax(2*N-1,0));CHKERRQ(ierr); 333a40ed3dSBarry Smith PetscFunctionReturn(0); 341987afe7SBarry Smith } 351987afe7SBarry Smith 364a2ae208SSatish Balay #undef __FUNCT__ 374a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_SeqDense" 38dfbe8321SBarry Smith PetscErrorCode MatGetInfo_SeqDense(Mat A,MatInfoType flag,MatInfo *info) 39289bc588SBarry Smith { 40d0f46423SBarry Smith PetscInt N = A->rmap->n*A->cmap->n; 413a40ed3dSBarry Smith 423a40ed3dSBarry Smith PetscFunctionBegin; 434e220ebcSLois Curfman McInnes info->block_size = 1.0; 444e220ebcSLois Curfman McInnes info->nz_allocated = (double)N; 456de62eeeSBarry Smith info->nz_used = (double)N; 466de62eeeSBarry Smith info->nz_unneeded = (double)0; 474e220ebcSLois Curfman McInnes info->assemblies = (double)A->num_ass; 484e220ebcSLois Curfman McInnes info->mallocs = 0; 497adad957SLisandro Dalcin info->memory = ((PetscObject)A)->mem; 504e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; 514e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 524e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 533a40ed3dSBarry Smith PetscFunctionReturn(0); 54289bc588SBarry Smith } 55289bc588SBarry Smith 564a2ae208SSatish Balay #undef __FUNCT__ 574a2ae208SSatish Balay #define __FUNCT__ "MatScale_SeqDense" 58f4df32b1SMatthew Knepley PetscErrorCode MatScale_SeqDense(Mat A,PetscScalar alpha) 5980cd9d93SLois Curfman McInnes { 60273d9f13SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 61f4df32b1SMatthew Knepley PetscScalar oalpha = alpha; 62efee365bSSatish Balay PetscErrorCode ierr; 630805154bSBarry Smith PetscBLASInt one = 1,j,nz,lda = PetscBLASIntCast(a->lda); 6480cd9d93SLois Curfman McInnes 653a40ed3dSBarry Smith PetscFunctionBegin; 66d0f46423SBarry Smith if (lda>A->rmap->n) { 67d0f46423SBarry Smith nz = PetscBLASIntCast(A->rmap->n); 68d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 69f4df32b1SMatthew Knepley BLASscal_(&nz,&oalpha,a->v+j*lda,&one); 70a5ce6ee0Svictorle } 71a5ce6ee0Svictorle } else { 72d0f46423SBarry Smith nz = PetscBLASIntCast(A->rmap->n*A->cmap->n); 73f4df32b1SMatthew Knepley BLASscal_(&nz,&oalpha,a->v,&one); 74a5ce6ee0Svictorle } 75efee365bSSatish Balay ierr = PetscLogFlops(nz);CHKERRQ(ierr); 763a40ed3dSBarry Smith PetscFunctionReturn(0); 7780cd9d93SLois Curfman McInnes } 7880cd9d93SLois Curfman McInnes 791cbb95d3SBarry Smith #undef __FUNCT__ 801cbb95d3SBarry Smith #define __FUNCT__ "MatIsHermitian_SeqDense" 811cbb95d3SBarry Smith PetscErrorCode MatIsHermitian_SeqDense(Mat A,PetscReal rtol,PetscTruth *fl) 821cbb95d3SBarry Smith { 831cbb95d3SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 84d0f46423SBarry Smith PetscInt i,j,m = A->rmap->n,N; 851cbb95d3SBarry Smith PetscScalar *v = a->v; 861cbb95d3SBarry Smith 871cbb95d3SBarry Smith PetscFunctionBegin; 881cbb95d3SBarry Smith *fl = PETSC_FALSE; 89d0f46423SBarry Smith if (A->rmap->n != A->cmap->n) PetscFunctionReturn(0); 901cbb95d3SBarry Smith N = a->lda; 911cbb95d3SBarry Smith 921cbb95d3SBarry Smith for (i=0; i<m; i++) { 931cbb95d3SBarry Smith for (j=i+1; j<m; j++) { 941cbb95d3SBarry Smith if (PetscAbsScalar(v[i+j*N] - PetscConj(v[j+i*N])) > rtol) PetscFunctionReturn(0); 951cbb95d3SBarry Smith } 961cbb95d3SBarry Smith } 971cbb95d3SBarry Smith *fl = PETSC_TRUE; 981cbb95d3SBarry Smith PetscFunctionReturn(0); 991cbb95d3SBarry Smith } 1001cbb95d3SBarry Smith 101b24902e0SBarry Smith #undef __FUNCT__ 102b24902e0SBarry Smith #define __FUNCT__ "MatDuplicateNoCreate_SeqDense" 103719d5645SBarry Smith PetscErrorCode MatDuplicateNoCreate_SeqDense(Mat newi,Mat A,MatDuplicateOption cpvalues) 104b24902e0SBarry Smith { 105b24902e0SBarry Smith Mat_SeqDense *mat = (Mat_SeqDense*)A->data,*l; 106b24902e0SBarry Smith PetscErrorCode ierr; 107b24902e0SBarry Smith PetscInt lda = (PetscInt)mat->lda,j,m; 108b24902e0SBarry Smith 109b24902e0SBarry Smith PetscFunctionBegin; 110719d5645SBarry Smith ierr = MatSeqDenseSetPreallocation(newi,PETSC_NULL);CHKERRQ(ierr); 111b24902e0SBarry Smith if (cpvalues == MAT_COPY_VALUES) { 112b24902e0SBarry Smith l = (Mat_SeqDense*)newi->data; 113d0f46423SBarry Smith if (lda>A->rmap->n) { 114d0f46423SBarry Smith m = A->rmap->n; 115d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 116b24902e0SBarry Smith ierr = PetscMemcpy(l->v+j*m,mat->v+j*lda,m*sizeof(PetscScalar));CHKERRQ(ierr); 117b24902e0SBarry Smith } 118b24902e0SBarry Smith } else { 119d0f46423SBarry Smith ierr = PetscMemcpy(l->v,mat->v,A->rmap->n*A->cmap->n*sizeof(PetscScalar));CHKERRQ(ierr); 120b24902e0SBarry Smith } 121b24902e0SBarry Smith } 122b24902e0SBarry Smith newi->assembled = PETSC_TRUE; 123b24902e0SBarry Smith PetscFunctionReturn(0); 124b24902e0SBarry Smith } 125b24902e0SBarry Smith 1264a2ae208SSatish Balay #undef __FUNCT__ 1274a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_SeqDense" 128dfbe8321SBarry Smith PetscErrorCode MatDuplicate_SeqDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 12902cad45dSBarry Smith { 1306849ba73SBarry Smith PetscErrorCode ierr; 13102cad45dSBarry Smith 1323a40ed3dSBarry Smith PetscFunctionBegin; 1335c9eb25fSBarry Smith ierr = MatCreate(((PetscObject)A)->comm,newmat);CHKERRQ(ierr); 134d0f46423SBarry Smith ierr = MatSetSizes(*newmat,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n);CHKERRQ(ierr); 1355c9eb25fSBarry Smith ierr = MatSetType(*newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 136719d5645SBarry Smith ierr = MatDuplicateNoCreate_SeqDense(*newmat,A,cpvalues);CHKERRQ(ierr); 137b24902e0SBarry Smith PetscFunctionReturn(0); 138b24902e0SBarry Smith } 139b24902e0SBarry Smith 1406ee01492SSatish Balay 1410481f469SBarry Smith extern PetscErrorCode MatLUFactor_SeqDense(Mat,IS,IS,const MatFactorInfo*); 142719d5645SBarry Smith 1434a2ae208SSatish Balay #undef __FUNCT__ 1444a2ae208SSatish Balay #define __FUNCT__ "MatLUFactorNumeric_SeqDense" 1450481f469SBarry Smith PetscErrorCode MatLUFactorNumeric_SeqDense(Mat fact,Mat A,const MatFactorInfo *info_dummy) 146289bc588SBarry Smith { 1474482741eSBarry Smith MatFactorInfo info; 148a093e273SMatthew Knepley PetscErrorCode ierr; 1493a40ed3dSBarry Smith 1503a40ed3dSBarry Smith PetscFunctionBegin; 151c3ef05f6SHong Zhang ierr = MatDuplicateNoCreate_SeqDense(fact,A,MAT_COPY_VALUES);CHKERRQ(ierr); 152719d5645SBarry Smith ierr = MatLUFactor_SeqDense(fact,0,0,&info);CHKERRQ(ierr); 1533a40ed3dSBarry Smith PetscFunctionReturn(0); 154289bc588SBarry Smith } 1556ee01492SSatish Balay 1560b4b3355SBarry Smith #undef __FUNCT__ 1574a2ae208SSatish Balay #define __FUNCT__ "MatSolve_SeqDense" 158dfbe8321SBarry Smith PetscErrorCode MatSolve_SeqDense(Mat A,Vec xx,Vec yy) 159289bc588SBarry Smith { 160c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 1616849ba73SBarry Smith PetscErrorCode ierr; 16287828ca2SBarry Smith PetscScalar *x,*y; 163d0f46423SBarry Smith PetscBLASInt one = 1,info,m = PetscBLASIntCast(A->rmap->n); 16467e560aaSBarry Smith 1653a40ed3dSBarry Smith PetscFunctionBegin; 1661ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 1671ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 168d0f46423SBarry Smith ierr = PetscMemcpy(y,x,A->rmap->n*sizeof(PetscScalar));CHKERRQ(ierr); 1695c9eb25fSBarry Smith if (A->factor == MAT_FACTOR_LU) { 170ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_GETRS) 17180444007SBarry Smith SETERRQ(PETSC_ERR_SUP,"GETRS - Lapack routine is unavailable."); 172ae7cfcebSSatish Balay #else 17371044d3cSBarry Smith LAPACKgetrs_("N",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info); 1744ce68768SBarry Smith if (info) SETERRQ(PETSC_ERR_LIB,"GETRS - Bad solve"); 175ae7cfcebSSatish Balay #endif 1765c9eb25fSBarry Smith } else if (A->factor == MAT_FACTOR_CHOLESKY){ 177ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_POTRS) 17880444007SBarry Smith SETERRQ(PETSC_ERR_SUP,"POTRS - Lapack routine is unavailable."); 179ae7cfcebSSatish Balay #else 18071044d3cSBarry Smith LAPACKpotrs_("L",&m,&one,mat->v,&mat->lda,y,&m,&info); 1814ce68768SBarry Smith if (info) SETERRQ(PETSC_ERR_LIB,"POTRS Bad solve"); 182ae7cfcebSSatish Balay #endif 183289bc588SBarry Smith } 18429bbc08cSBarry Smith else SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Matrix must be factored to solve"); 1851ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 1861ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 187dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*A->cmap->n*A->cmap->n - A->cmap->n);CHKERRQ(ierr); 1883a40ed3dSBarry Smith PetscFunctionReturn(0); 189289bc588SBarry Smith } 1906ee01492SSatish Balay 1914a2ae208SSatish Balay #undef __FUNCT__ 1924a2ae208SSatish Balay #define __FUNCT__ "MatSolveTranspose_SeqDense" 193dfbe8321SBarry Smith PetscErrorCode MatSolveTranspose_SeqDense(Mat A,Vec xx,Vec yy) 194da3a660dSBarry Smith { 195c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 196dfbe8321SBarry Smith PetscErrorCode ierr; 19787828ca2SBarry Smith PetscScalar *x,*y; 198d0f46423SBarry Smith PetscBLASInt one = 1,info,m = PetscBLASIntCast(A->rmap->n); 19967e560aaSBarry Smith 2003a40ed3dSBarry Smith PetscFunctionBegin; 2011ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2021ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 203d0f46423SBarry Smith ierr = PetscMemcpy(y,x,A->rmap->n*sizeof(PetscScalar));CHKERRQ(ierr); 204752f5567SLois Curfman McInnes /* assume if pivots exist then use LU; else Cholesky */ 205da3a660dSBarry Smith if (mat->pivots) { 206ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_GETRS) 20780444007SBarry Smith SETERRQ(PETSC_ERR_SUP,"GETRS - Lapack routine is unavailable."); 208ae7cfcebSSatish Balay #else 20971044d3cSBarry Smith LAPACKgetrs_("T",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info); 2104ce68768SBarry Smith if (info) SETERRQ(PETSC_ERR_LIB,"POTRS - Bad solve"); 211ae7cfcebSSatish Balay #endif 2127a97a34bSBarry Smith } else { 213ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_POTRS) 21480444007SBarry Smith SETERRQ(PETSC_ERR_SUP,"POTRS - Lapack routine is unavailable."); 215ae7cfcebSSatish Balay #else 21671044d3cSBarry Smith LAPACKpotrs_("L",&m,&one,mat->v,&mat->lda,y,&m,&info); 2174ce68768SBarry Smith if (info) SETERRQ(PETSC_ERR_LIB,"POTRS - Bad solve"); 218ae7cfcebSSatish Balay #endif 219da3a660dSBarry Smith } 2201ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2211ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 222dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*A->cmap->n*A->cmap->n - A->cmap->n);CHKERRQ(ierr); 2233a40ed3dSBarry Smith PetscFunctionReturn(0); 224da3a660dSBarry Smith } 2256ee01492SSatish Balay 2264a2ae208SSatish Balay #undef __FUNCT__ 2274a2ae208SSatish Balay #define __FUNCT__ "MatSolveAdd_SeqDense" 228dfbe8321SBarry Smith PetscErrorCode MatSolveAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy) 229da3a660dSBarry Smith { 230c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 231dfbe8321SBarry Smith PetscErrorCode ierr; 23287828ca2SBarry Smith PetscScalar *x,*y,sone = 1.0; 233da3a660dSBarry Smith Vec tmp = 0; 234d0f46423SBarry Smith PetscBLASInt one = 1,info,m = PetscBLASIntCast(A->rmap->n); 23567e560aaSBarry Smith 2363a40ed3dSBarry Smith PetscFunctionBegin; 2371ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2381ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 239d0f46423SBarry Smith if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 240da3a660dSBarry Smith if (yy == zz) { 24178b31e54SBarry Smith ierr = VecDuplicate(yy,&tmp);CHKERRQ(ierr); 24252e6d16bSBarry Smith ierr = PetscLogObjectParent(A,tmp);CHKERRQ(ierr); 24378b31e54SBarry Smith ierr = VecCopy(yy,tmp);CHKERRQ(ierr); 244da3a660dSBarry Smith } 245d0f46423SBarry Smith ierr = PetscMemcpy(y,x,A->rmap->n*sizeof(PetscScalar));CHKERRQ(ierr); 246752f5567SLois Curfman McInnes /* assume if pivots exist then use LU; else Cholesky */ 247da3a660dSBarry Smith if (mat->pivots) { 248ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_GETRS) 24980444007SBarry Smith SETERRQ(PETSC_ERR_SUP,"GETRS - Lapack routine is unavailable."); 250ae7cfcebSSatish Balay #else 25171044d3cSBarry Smith LAPACKgetrs_("N",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info); 2522ffef20aSBarry Smith if (info) SETERRQ(PETSC_ERR_LIB,"Bad solve"); 253ae7cfcebSSatish Balay #endif 254a8c6a408SBarry Smith } else { 255ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_POTRS) 25680444007SBarry Smith SETERRQ(PETSC_ERR_SUP,"POTRS - Lapack routine is unavailable."); 257ae7cfcebSSatish Balay #else 25871044d3cSBarry Smith LAPACKpotrs_("L",&m,&one,mat->v,&mat->lda,y,&m,&info); 2592ffef20aSBarry Smith if (info) SETERRQ(PETSC_ERR_LIB,"Bad solve"); 260ae7cfcebSSatish Balay #endif 261da3a660dSBarry Smith } 2622dcb1b2aSMatthew Knepley if (tmp) {ierr = VecAXPY(yy,sone,tmp);CHKERRQ(ierr); ierr = VecDestroy(tmp);CHKERRQ(ierr);} 2632dcb1b2aSMatthew Knepley else {ierr = VecAXPY(yy,sone,zz);CHKERRQ(ierr);} 2641ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2651ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 266dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*A->cmap->n*A->cmap->n);CHKERRQ(ierr); 2673a40ed3dSBarry Smith PetscFunctionReturn(0); 268da3a660dSBarry Smith } 26967e560aaSBarry Smith 2704a2ae208SSatish Balay #undef __FUNCT__ 2714a2ae208SSatish Balay #define __FUNCT__ "MatSolveTransposeAdd_SeqDense" 272dfbe8321SBarry Smith PetscErrorCode MatSolveTransposeAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy) 273da3a660dSBarry Smith { 274c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 2756849ba73SBarry Smith PetscErrorCode ierr; 27687828ca2SBarry Smith PetscScalar *x,*y,sone = 1.0; 277da3a660dSBarry Smith Vec tmp; 278d0f46423SBarry Smith PetscBLASInt one = 1,info,m = PetscBLASIntCast(A->rmap->n); 27967e560aaSBarry Smith 2803a40ed3dSBarry Smith PetscFunctionBegin; 281d0f46423SBarry Smith if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 2821ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2831ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 284da3a660dSBarry Smith if (yy == zz) { 28578b31e54SBarry Smith ierr = VecDuplicate(yy,&tmp);CHKERRQ(ierr); 28652e6d16bSBarry Smith ierr = PetscLogObjectParent(A,tmp);CHKERRQ(ierr); 28778b31e54SBarry Smith ierr = VecCopy(yy,tmp);CHKERRQ(ierr); 288da3a660dSBarry Smith } 289d0f46423SBarry Smith ierr = PetscMemcpy(y,x,A->rmap->n*sizeof(PetscScalar));CHKERRQ(ierr); 290752f5567SLois Curfman McInnes /* assume if pivots exist then use LU; else Cholesky */ 291da3a660dSBarry Smith if (mat->pivots) { 292ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_GETRS) 29380444007SBarry Smith SETERRQ(PETSC_ERR_SUP,"GETRS - Lapack routine is unavailable."); 294ae7cfcebSSatish Balay #else 29571044d3cSBarry Smith LAPACKgetrs_("T",&m,&one,mat->v,&mat->lda,mat->pivots,y,&m,&info); 2962ffef20aSBarry Smith if (info) SETERRQ(PETSC_ERR_LIB,"Bad solve"); 297ae7cfcebSSatish Balay #endif 2983a40ed3dSBarry Smith } else { 299ae7cfcebSSatish Balay #if defined(PETSC_MISSING_LAPACK_POTRS) 30080444007SBarry Smith SETERRQ(PETSC_ERR_SUP,"POTRS - Lapack routine is unavailable."); 301ae7cfcebSSatish Balay #else 30271044d3cSBarry Smith LAPACKpotrs_("L",&m,&one,mat->v,&mat->lda,y,&m,&info); 3032ffef20aSBarry Smith if (info) SETERRQ(PETSC_ERR_LIB,"Bad solve"); 304ae7cfcebSSatish Balay #endif 305da3a660dSBarry Smith } 30690f02eecSBarry Smith if (tmp) { 3072dcb1b2aSMatthew Knepley ierr = VecAXPY(yy,sone,tmp);CHKERRQ(ierr); 30890f02eecSBarry Smith ierr = VecDestroy(tmp);CHKERRQ(ierr); 3093a40ed3dSBarry Smith } else { 3102dcb1b2aSMatthew Knepley ierr = VecAXPY(yy,sone,zz);CHKERRQ(ierr); 31190f02eecSBarry Smith } 3121ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 3131ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 314dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*A->cmap->n*A->cmap->n);CHKERRQ(ierr); 3153a40ed3dSBarry Smith PetscFunctionReturn(0); 316da3a660dSBarry Smith } 317db4efbfdSBarry Smith 318db4efbfdSBarry Smith /* ---------------------------------------------------------------*/ 319db4efbfdSBarry Smith /* COMMENT: I have chosen to hide row permutation in the pivots, 320db4efbfdSBarry Smith rather than put it in the Mat->row slot.*/ 321db4efbfdSBarry Smith #undef __FUNCT__ 322db4efbfdSBarry Smith #define __FUNCT__ "MatLUFactor_SeqDense" 3230481f469SBarry Smith PetscErrorCode MatLUFactor_SeqDense(Mat A,IS row,IS col,const MatFactorInfo *minfo) 324db4efbfdSBarry Smith { 325db4efbfdSBarry Smith #if defined(PETSC_MISSING_LAPACK_GETRF) 326db4efbfdSBarry Smith PetscFunctionBegin; 327db4efbfdSBarry Smith SETERRQ(PETSC_ERR_SUP,"GETRF - Lapack routine is unavailable."); 328db4efbfdSBarry Smith #else 329db4efbfdSBarry Smith Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 330db4efbfdSBarry Smith PetscErrorCode ierr; 331db4efbfdSBarry Smith PetscBLASInt n,m,info; 332db4efbfdSBarry Smith 333db4efbfdSBarry Smith PetscFunctionBegin; 334db4efbfdSBarry Smith n = PetscBLASIntCast(A->cmap->n); 335db4efbfdSBarry Smith m = PetscBLASIntCast(A->rmap->n); 336db4efbfdSBarry Smith if (!mat->pivots) { 337db4efbfdSBarry Smith ierr = PetscMalloc((A->rmap->n+1)*sizeof(PetscBLASInt),&mat->pivots);CHKERRQ(ierr); 338db4efbfdSBarry Smith ierr = PetscLogObjectMemory(A,A->rmap->n*sizeof(PetscBLASInt));CHKERRQ(ierr); 339db4efbfdSBarry Smith } 340db4efbfdSBarry Smith if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 341db4efbfdSBarry Smith LAPACKgetrf_(&m,&n,mat->v,&mat->lda,mat->pivots,&info); 342db4efbfdSBarry Smith if (info<0) SETERRQ(PETSC_ERR_LIB,"Bad argument to LU factorization"); 343db4efbfdSBarry Smith if (info>0) SETERRQ(PETSC_ERR_MAT_LU_ZRPVT,"Bad LU factorization"); 344db4efbfdSBarry Smith A->ops->solve = MatSolve_SeqDense; 345db4efbfdSBarry Smith A->ops->solvetranspose = MatSolveTranspose_SeqDense; 346db4efbfdSBarry Smith A->ops->solveadd = MatSolveAdd_SeqDense; 347db4efbfdSBarry Smith A->ops->solvetransposeadd = MatSolveTransposeAdd_SeqDense; 348db4efbfdSBarry Smith A->factor = MAT_FACTOR_LU; 349db4efbfdSBarry Smith 350dc0b31edSSatish Balay ierr = PetscLogFlops((2.0*A->cmap->n*A->cmap->n*A->cmap->n)/3);CHKERRQ(ierr); 351db4efbfdSBarry Smith #endif 352db4efbfdSBarry Smith PetscFunctionReturn(0); 353db4efbfdSBarry Smith } 354db4efbfdSBarry Smith 355db4efbfdSBarry Smith #undef __FUNCT__ 356db4efbfdSBarry Smith #define __FUNCT__ "MatCholeskyFactor_SeqDense" 3570481f469SBarry Smith PetscErrorCode MatCholeskyFactor_SeqDense(Mat A,IS perm,const MatFactorInfo *factinfo) 358db4efbfdSBarry Smith { 359db4efbfdSBarry Smith #if defined(PETSC_MISSING_LAPACK_POTRF) 360db4efbfdSBarry Smith PetscFunctionBegin; 361db4efbfdSBarry Smith SETERRQ(PETSC_ERR_SUP,"POTRF - Lapack routine is unavailable."); 362db4efbfdSBarry Smith #else 363db4efbfdSBarry Smith Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 364db4efbfdSBarry Smith PetscErrorCode ierr; 365db4efbfdSBarry Smith PetscBLASInt info,n = PetscBLASIntCast(A->cmap->n); 366db4efbfdSBarry Smith 367db4efbfdSBarry Smith PetscFunctionBegin; 368db4efbfdSBarry Smith ierr = PetscFree(mat->pivots);CHKERRQ(ierr); 369db4efbfdSBarry Smith mat->pivots = 0; 370db4efbfdSBarry Smith 371db4efbfdSBarry Smith if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 372db4efbfdSBarry Smith LAPACKpotrf_("L",&n,mat->v,&mat->lda,&info); 373db4efbfdSBarry Smith if (info) SETERRQ1(PETSC_ERR_MAT_CH_ZRPVT,"Bad factorization: zero pivot in row %D",(PetscInt)info-1); 374db4efbfdSBarry Smith A->ops->solve = MatSolve_SeqDense; 375db4efbfdSBarry Smith A->ops->solvetranspose = MatSolveTranspose_SeqDense; 376db4efbfdSBarry Smith A->ops->solveadd = MatSolveAdd_SeqDense; 377db4efbfdSBarry Smith A->ops->solvetransposeadd = MatSolveTransposeAdd_SeqDense; 378db4efbfdSBarry Smith A->factor = MAT_FACTOR_CHOLESKY; 379dc0b31edSSatish Balay ierr = PetscLogFlops((A->cmap->n*A->cmap->n*A->cmap->n)/3.0);CHKERRQ(ierr); 380db4efbfdSBarry Smith #endif 381db4efbfdSBarry Smith PetscFunctionReturn(0); 382db4efbfdSBarry Smith } 383db4efbfdSBarry Smith 384db4efbfdSBarry Smith 385db4efbfdSBarry Smith #undef __FUNCT__ 386db4efbfdSBarry Smith #define __FUNCT__ "MatCholeskyFactorNumeric_SeqDense" 3870481f469SBarry Smith PetscErrorCode MatCholeskyFactorNumeric_SeqDense(Mat fact,Mat A,const MatFactorInfo *info_dummy) 388db4efbfdSBarry Smith { 389db4efbfdSBarry Smith PetscErrorCode ierr; 390db4efbfdSBarry Smith MatFactorInfo info; 391db4efbfdSBarry Smith 392db4efbfdSBarry Smith PetscFunctionBegin; 393db4efbfdSBarry Smith info.fill = 1.0; 394c3ef05f6SHong Zhang ierr = MatDuplicateNoCreate_SeqDense(fact,A,MAT_COPY_VALUES);CHKERRQ(ierr); 395719d5645SBarry Smith ierr = MatCholeskyFactor_SeqDense(fact,0,&info);CHKERRQ(ierr); 396db4efbfdSBarry Smith PetscFunctionReturn(0); 397db4efbfdSBarry Smith } 398db4efbfdSBarry Smith 399db4efbfdSBarry Smith #undef __FUNCT__ 400db4efbfdSBarry Smith #define __FUNCT__ "MatCholeskyFactorSymbolic_SeqDense" 4010481f469SBarry Smith PetscErrorCode MatCholeskyFactorSymbolic_SeqDense(Mat fact,Mat A,IS row,const MatFactorInfo *info) 402db4efbfdSBarry Smith { 403db4efbfdSBarry Smith PetscFunctionBegin; 404c3ef05f6SHong Zhang fact->assembled = PETSC_TRUE; 405719d5645SBarry Smith fact->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqDense; 406db4efbfdSBarry Smith PetscFunctionReturn(0); 407db4efbfdSBarry Smith } 408db4efbfdSBarry Smith 409db4efbfdSBarry Smith #undef __FUNCT__ 410db4efbfdSBarry Smith #define __FUNCT__ "MatLUFactorSymbolic_SeqDense" 4110481f469SBarry Smith PetscErrorCode MatLUFactorSymbolic_SeqDense(Mat fact,Mat A,IS row,IS col,const MatFactorInfo *info) 412db4efbfdSBarry Smith { 413db4efbfdSBarry Smith PetscFunctionBegin; 414c3ef05f6SHong Zhang fact->assembled = PETSC_TRUE; 415719d5645SBarry Smith fact->ops->lufactornumeric = MatLUFactorNumeric_SeqDense; 416db4efbfdSBarry Smith PetscFunctionReturn(0); 417db4efbfdSBarry Smith } 418db4efbfdSBarry Smith 419bb5747d9SMatthew Knepley EXTERN_C_BEGIN 420db4efbfdSBarry Smith #undef __FUNCT__ 421db4efbfdSBarry Smith #define __FUNCT__ "MatGetFactor_seqdense_petsc" 422db4efbfdSBarry Smith PetscErrorCode MatGetFactor_seqdense_petsc(Mat A,MatFactorType ftype,Mat *fact) 423db4efbfdSBarry Smith { 424db4efbfdSBarry Smith PetscErrorCode ierr; 425db4efbfdSBarry Smith 426db4efbfdSBarry Smith PetscFunctionBegin; 427db4efbfdSBarry Smith ierr = MatCreate(((PetscObject)A)->comm,fact);CHKERRQ(ierr); 428db4efbfdSBarry Smith ierr = MatSetSizes(*fact,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n);CHKERRQ(ierr); 429db4efbfdSBarry Smith ierr = MatSetType(*fact,((PetscObject)A)->type_name);CHKERRQ(ierr); 430db4efbfdSBarry Smith if (ftype == MAT_FACTOR_LU){ 431db4efbfdSBarry Smith (*fact)->ops->lufactorsymbolic = MatLUFactorSymbolic_SeqDense; 432db4efbfdSBarry Smith } else { 433db4efbfdSBarry Smith (*fact)->ops->choleskyfactorsymbolic = MatCholeskyFactorSymbolic_SeqDense; 434db4efbfdSBarry Smith } 435db4efbfdSBarry Smith (*fact)->factor = ftype; 436db4efbfdSBarry Smith PetscFunctionReturn(0); 437db4efbfdSBarry Smith } 438bb5747d9SMatthew Knepley EXTERN_C_END 439db4efbfdSBarry Smith 440289bc588SBarry Smith /* ------------------------------------------------------------------*/ 4414a2ae208SSatish Balay #undef __FUNCT__ 44241f059aeSBarry Smith #define __FUNCT__ "MatSOR_SeqDense" 44341f059aeSBarry Smith PetscErrorCode MatSOR_SeqDense(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal shift,PetscInt its,PetscInt lits,Vec xx) 444289bc588SBarry Smith { 445c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 44687828ca2SBarry Smith PetscScalar *x,*b,*v = mat->v,zero = 0.0,xt; 447dfbe8321SBarry Smith PetscErrorCode ierr; 448d0f46423SBarry Smith PetscInt m = A->rmap->n,i; 449aa482453SBarry Smith #if !defined(PETSC_USE_COMPLEX) 4500805154bSBarry Smith PetscBLASInt o = 1,bm = PetscBLASIntCast(m); 451bc1b551cSSatish Balay #endif 452289bc588SBarry Smith 4533a40ed3dSBarry Smith PetscFunctionBegin; 454289bc588SBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 45571044d3cSBarry Smith /* this is a hack fix, should have another version without the second BLASdot */ 4562dcb1b2aSMatthew Knepley ierr = VecSet(xx,zero);CHKERRQ(ierr); 457289bc588SBarry Smith } 4581ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 4591ebc52fbSHong Zhang ierr = VecGetArray(bb,&b);CHKERRQ(ierr); 460b965ef7fSBarry Smith its = its*lits; 46177431f27SBarry Smith if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 462289bc588SBarry Smith while (its--) { 463fccaa45eSBarry Smith if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 464289bc588SBarry Smith for (i=0; i<m; i++) { 465aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 466f1747703SBarry Smith /* cannot use BLAS dot for complex because compiler/linker is 467f1747703SBarry Smith not happy about returning a double complex */ 46813f74950SBarry Smith PetscInt _i; 46987828ca2SBarry Smith PetscScalar sum = b[i]; 470f1747703SBarry Smith for (_i=0; _i<m; _i++) { 4713f6de6efSSatish Balay sum -= PetscConj(v[i+_i*m])*x[_i]; 472f1747703SBarry Smith } 473f1747703SBarry Smith xt = sum; 474f1747703SBarry Smith #else 47571044d3cSBarry Smith xt = b[i] - BLASdot_(&bm,v+i,&bm,x,&o); 476f1747703SBarry Smith #endif 47755a1b374SBarry Smith x[i] = (1. - omega)*x[i] + omega*(xt+v[i + i*m]*x[i])/(v[i + i*m]+shift); 478289bc588SBarry Smith } 479289bc588SBarry Smith } 480fccaa45eSBarry Smith if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 481289bc588SBarry Smith for (i=m-1; i>=0; i--) { 482aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 483f1747703SBarry Smith /* cannot use BLAS dot for complex because compiler/linker is 484f1747703SBarry Smith not happy about returning a double complex */ 48513f74950SBarry Smith PetscInt _i; 48687828ca2SBarry Smith PetscScalar sum = b[i]; 487f1747703SBarry Smith for (_i=0; _i<m; _i++) { 4883f6de6efSSatish Balay sum -= PetscConj(v[i+_i*m])*x[_i]; 489f1747703SBarry Smith } 490f1747703SBarry Smith xt = sum; 491f1747703SBarry Smith #else 49271044d3cSBarry Smith xt = b[i] - BLASdot_(&bm,v+i,&bm,x,&o); 493f1747703SBarry Smith #endif 49455a1b374SBarry Smith x[i] = (1. - omega)*x[i] + omega*(xt+v[i + i*m]*x[i])/(v[i + i*m]+shift); 495289bc588SBarry Smith } 496289bc588SBarry Smith } 497289bc588SBarry Smith } 4981ebc52fbSHong Zhang ierr = VecRestoreArray(bb,&b);CHKERRQ(ierr); 4991ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 5003a40ed3dSBarry Smith PetscFunctionReturn(0); 501289bc588SBarry Smith } 502289bc588SBarry Smith 503289bc588SBarry Smith /* -----------------------------------------------------------------*/ 5044a2ae208SSatish Balay #undef __FUNCT__ 5054a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_SeqDense" 506dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_SeqDense(Mat A,Vec xx,Vec yy) 507289bc588SBarry Smith { 508c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 50987828ca2SBarry Smith PetscScalar *v = mat->v,*x,*y; 510dfbe8321SBarry Smith PetscErrorCode ierr; 5110805154bSBarry Smith PetscBLASInt m, n,_One=1; 512ea709b57SSatish Balay PetscScalar _DOne=1.0,_DZero=0.0; 5133a40ed3dSBarry Smith 5143a40ed3dSBarry Smith PetscFunctionBegin; 515d0f46423SBarry Smith m = PetscBLASIntCast(A->rmap->n); 516d0f46423SBarry Smith n = PetscBLASIntCast(A->cmap->n); 517d0f46423SBarry Smith if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 5181ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 5191ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 52071044d3cSBarry Smith BLASgemv_("T",&m,&n,&_DOne,v,&mat->lda,x,&_One,&_DZero,y,&_One); 5211ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 5221ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 523dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n - A->cmap->n);CHKERRQ(ierr); 5243a40ed3dSBarry Smith PetscFunctionReturn(0); 525289bc588SBarry Smith } 526800995b7SMatthew Knepley 5274a2ae208SSatish Balay #undef __FUNCT__ 5284a2ae208SSatish Balay #define __FUNCT__ "MatMult_SeqDense" 529dfbe8321SBarry Smith PetscErrorCode MatMult_SeqDense(Mat A,Vec xx,Vec yy) 530289bc588SBarry Smith { 531c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 53287828ca2SBarry Smith PetscScalar *v = mat->v,*x,*y,_DOne=1.0,_DZero=0.0; 533dfbe8321SBarry Smith PetscErrorCode ierr; 5340805154bSBarry Smith PetscBLASInt m, n, _One=1; 5353a40ed3dSBarry Smith 5363a40ed3dSBarry Smith PetscFunctionBegin; 537d0f46423SBarry Smith m = PetscBLASIntCast(A->rmap->n); 538d0f46423SBarry Smith n = PetscBLASIntCast(A->cmap->n); 539d0f46423SBarry Smith if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 5401ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 5411ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 54271044d3cSBarry Smith BLASgemv_("N",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DZero,y,&_One); 5431ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 5441ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 545dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n - A->rmap->n);CHKERRQ(ierr); 5463a40ed3dSBarry Smith PetscFunctionReturn(0); 547289bc588SBarry Smith } 5486ee01492SSatish Balay 5494a2ae208SSatish Balay #undef __FUNCT__ 5504a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_SeqDense" 551dfbe8321SBarry Smith PetscErrorCode MatMultAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy) 552289bc588SBarry Smith { 553c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 55487828ca2SBarry Smith PetscScalar *v = mat->v,*x,*y,_DOne=1.0; 555dfbe8321SBarry Smith PetscErrorCode ierr; 5560805154bSBarry Smith PetscBLASInt m, n, _One=1; 5573a40ed3dSBarry Smith 5583a40ed3dSBarry Smith PetscFunctionBegin; 559d0f46423SBarry Smith m = PetscBLASIntCast(A->rmap->n); 560d0f46423SBarry Smith n = PetscBLASIntCast(A->cmap->n); 561d0f46423SBarry Smith if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 562600d6d0bSBarry Smith if (zz != yy) {ierr = VecCopy(zz,yy);CHKERRQ(ierr);} 5631ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 5641ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 56571044d3cSBarry Smith BLASgemv_("N",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DOne,y,&_One); 5661ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 5671ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 568dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n);CHKERRQ(ierr); 5693a40ed3dSBarry Smith PetscFunctionReturn(0); 570289bc588SBarry Smith } 5716ee01492SSatish Balay 5724a2ae208SSatish Balay #undef __FUNCT__ 5734a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_SeqDense" 574dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy) 575289bc588SBarry Smith { 576c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 57787828ca2SBarry Smith PetscScalar *v = mat->v,*x,*y; 578dfbe8321SBarry Smith PetscErrorCode ierr; 5790805154bSBarry Smith PetscBLASInt m, n, _One=1; 58087828ca2SBarry Smith PetscScalar _DOne=1.0; 5813a40ed3dSBarry Smith 5823a40ed3dSBarry Smith PetscFunctionBegin; 583d0f46423SBarry Smith m = PetscBLASIntCast(A->rmap->n); 584d0f46423SBarry Smith n = PetscBLASIntCast(A->cmap->n); 585d0f46423SBarry Smith if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0); 586600d6d0bSBarry Smith if (zz != yy) {ierr = VecCopy(zz,yy);CHKERRQ(ierr);} 5871ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 5881ebc52fbSHong Zhang ierr = VecGetArray(yy,&y);CHKERRQ(ierr); 58971044d3cSBarry Smith BLASgemv_("T",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DOne,y,&_One); 5901ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 5911ebc52fbSHong Zhang ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); 592dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*A->rmap->n*A->cmap->n);CHKERRQ(ierr); 5933a40ed3dSBarry Smith PetscFunctionReturn(0); 594289bc588SBarry Smith } 595289bc588SBarry Smith 596289bc588SBarry Smith /* -----------------------------------------------------------------*/ 5974a2ae208SSatish Balay #undef __FUNCT__ 5984a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_SeqDense" 59913f74950SBarry Smith PetscErrorCode MatGetRow_SeqDense(Mat A,PetscInt row,PetscInt *ncols,PetscInt **cols,PetscScalar **vals) 600289bc588SBarry Smith { 601c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 60287828ca2SBarry Smith PetscScalar *v; 6036849ba73SBarry Smith PetscErrorCode ierr; 60413f74950SBarry Smith PetscInt i; 60567e560aaSBarry Smith 6063a40ed3dSBarry Smith PetscFunctionBegin; 607d0f46423SBarry Smith *ncols = A->cmap->n; 608289bc588SBarry Smith if (cols) { 609d0f46423SBarry Smith ierr = PetscMalloc((A->cmap->n+1)*sizeof(PetscInt),cols);CHKERRQ(ierr); 610d0f46423SBarry Smith for (i=0; i<A->cmap->n; i++) (*cols)[i] = i; 611289bc588SBarry Smith } 612289bc588SBarry Smith if (vals) { 613d0f46423SBarry Smith ierr = PetscMalloc((A->cmap->n+1)*sizeof(PetscScalar),vals);CHKERRQ(ierr); 614289bc588SBarry Smith v = mat->v + row; 615d0f46423SBarry Smith for (i=0; i<A->cmap->n; i++) {(*vals)[i] = *v; v += mat->lda;} 616289bc588SBarry Smith } 6173a40ed3dSBarry Smith PetscFunctionReturn(0); 618289bc588SBarry Smith } 6196ee01492SSatish Balay 6204a2ae208SSatish Balay #undef __FUNCT__ 6214a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_SeqDense" 62213f74950SBarry Smith PetscErrorCode MatRestoreRow_SeqDense(Mat A,PetscInt row,PetscInt *ncols,PetscInt **cols,PetscScalar **vals) 623289bc588SBarry Smith { 624dfbe8321SBarry Smith PetscErrorCode ierr; 625606d414cSSatish Balay PetscFunctionBegin; 626606d414cSSatish Balay if (cols) {ierr = PetscFree(*cols);CHKERRQ(ierr);} 627606d414cSSatish Balay if (vals) {ierr = PetscFree(*vals);CHKERRQ(ierr); } 6283a40ed3dSBarry Smith PetscFunctionReturn(0); 629289bc588SBarry Smith } 630289bc588SBarry Smith /* ----------------------------------------------------------------*/ 6314a2ae208SSatish Balay #undef __FUNCT__ 6324a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_SeqDense" 63313f74950SBarry Smith PetscErrorCode MatSetValues_SeqDense(Mat A,PetscInt m,const PetscInt indexm[],PetscInt n,const PetscInt indexn[],const PetscScalar v[],InsertMode addv) 634289bc588SBarry Smith { 635c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 63613f74950SBarry Smith PetscInt i,j,idx=0; 637d6dfbf8fSBarry Smith 6383a40ed3dSBarry Smith PetscFunctionBegin; 63971fd2e92SBarry Smith if (v) PetscValidScalarPointer(v,6); 640289bc588SBarry Smith if (!mat->roworiented) { 641dbb450caSBarry Smith if (addv == INSERT_VALUES) { 642289bc588SBarry Smith for (j=0; j<n; j++) { 643cddbea37SSatish Balay if (indexn[j] < 0) {idx += m; continue;} 6442515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 645d0f46423SBarry Smith if (indexn[j] >= A->cmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1); 64658804f6dSBarry Smith #endif 647289bc588SBarry Smith for (i=0; i<m; i++) { 648cddbea37SSatish Balay if (indexm[i] < 0) {idx++; continue;} 6492515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 650d0f46423SBarry Smith if (indexm[i] >= A->rmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1); 65158804f6dSBarry Smith #endif 652cddbea37SSatish Balay mat->v[indexn[j]*mat->lda + indexm[i]] = v[idx++]; 653289bc588SBarry Smith } 654289bc588SBarry Smith } 6553a40ed3dSBarry Smith } else { 656289bc588SBarry Smith for (j=0; j<n; j++) { 657cddbea37SSatish Balay if (indexn[j] < 0) {idx += m; continue;} 6582515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 659d0f46423SBarry Smith if (indexn[j] >= A->cmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1); 66058804f6dSBarry Smith #endif 661289bc588SBarry Smith for (i=0; i<m; i++) { 662cddbea37SSatish Balay if (indexm[i] < 0) {idx++; continue;} 6632515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 664d0f46423SBarry Smith if (indexm[i] >= A->rmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1); 66558804f6dSBarry Smith #endif 666cddbea37SSatish Balay mat->v[indexn[j]*mat->lda + indexm[i]] += v[idx++]; 667289bc588SBarry Smith } 668289bc588SBarry Smith } 669289bc588SBarry Smith } 6703a40ed3dSBarry Smith } else { 671dbb450caSBarry Smith if (addv == INSERT_VALUES) { 672e8d4e0b9SBarry Smith for (i=0; i<m; i++) { 673cddbea37SSatish Balay if (indexm[i] < 0) { idx += n; continue;} 6742515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 675d0f46423SBarry Smith if (indexm[i] >= A->rmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1); 67658804f6dSBarry Smith #endif 677e8d4e0b9SBarry Smith for (j=0; j<n; j++) { 678cddbea37SSatish Balay if (indexn[j] < 0) { idx++; continue;} 6792515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 680d0f46423SBarry Smith if (indexn[j] >= A->cmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1); 68158804f6dSBarry Smith #endif 682cddbea37SSatish Balay mat->v[indexn[j]*mat->lda + indexm[i]] = v[idx++]; 683e8d4e0b9SBarry Smith } 684e8d4e0b9SBarry Smith } 6853a40ed3dSBarry Smith } else { 686289bc588SBarry Smith for (i=0; i<m; i++) { 687cddbea37SSatish Balay if (indexm[i] < 0) { idx += n; continue;} 6882515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 689d0f46423SBarry Smith if (indexm[i] >= A->rmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",indexm[i],A->rmap->n-1); 69058804f6dSBarry Smith #endif 691289bc588SBarry Smith for (j=0; j<n; j++) { 692cddbea37SSatish Balay if (indexn[j] < 0) { idx++; continue;} 6932515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 694d0f46423SBarry Smith if (indexn[j] >= A->cmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",indexn[j],A->cmap->n-1); 69558804f6dSBarry Smith #endif 696cddbea37SSatish Balay mat->v[indexn[j]*mat->lda + indexm[i]] += v[idx++]; 697289bc588SBarry Smith } 698289bc588SBarry Smith } 699289bc588SBarry Smith } 700e8d4e0b9SBarry Smith } 7013a40ed3dSBarry Smith PetscFunctionReturn(0); 702289bc588SBarry Smith } 703e8d4e0b9SBarry Smith 7044a2ae208SSatish Balay #undef __FUNCT__ 7054a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_SeqDense" 70613f74950SBarry Smith PetscErrorCode MatGetValues_SeqDense(Mat A,PetscInt m,const PetscInt indexm[],PetscInt n,const PetscInt indexn[],PetscScalar v[]) 707ae80bb75SLois Curfman McInnes { 708ae80bb75SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 70913f74950SBarry Smith PetscInt i,j; 710ae80bb75SLois Curfman McInnes 7113a40ed3dSBarry Smith PetscFunctionBegin; 712ae80bb75SLois Curfman McInnes /* row-oriented output */ 713ae80bb75SLois Curfman McInnes for (i=0; i<m; i++) { 71497e567efSBarry Smith if (indexm[i] < 0) {v += n;continue;} 715d0f46423SBarry Smith if (indexm[i] >= A->rmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row %D requested larger than number rows %D",indexm[i],A->rmap->n); 716ae80bb75SLois Curfman McInnes for (j=0; j<n; j++) { 7176f31f424SBarry Smith if (indexn[j] < 0) {v++; continue;} 718d0f46423SBarry Smith if (indexn[j] >= A->cmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column %D requested larger than number columns %D",indexn[j],A->cmap->n); 71997e567efSBarry Smith *v++ = mat->v[indexn[j]*mat->lda + indexm[i]]; 720ae80bb75SLois Curfman McInnes } 721ae80bb75SLois Curfman McInnes } 7223a40ed3dSBarry Smith PetscFunctionReturn(0); 723ae80bb75SLois Curfman McInnes } 724ae80bb75SLois Curfman McInnes 725289bc588SBarry Smith /* -----------------------------------------------------------------*/ 726289bc588SBarry Smith 727e090d566SSatish Balay #include "petscsys.h" 72888e32edaSLois Curfman McInnes 7294a2ae208SSatish Balay #undef __FUNCT__ 7304a2ae208SSatish Balay #define __FUNCT__ "MatLoad_SeqDense" 731a313700dSBarry Smith PetscErrorCode MatLoad_SeqDense(PetscViewer viewer, const MatType type,Mat *A) 73288e32edaSLois Curfman McInnes { 73388e32edaSLois Curfman McInnes Mat_SeqDense *a; 73488e32edaSLois Curfman McInnes Mat B; 7356849ba73SBarry Smith PetscErrorCode ierr; 73613f74950SBarry Smith PetscInt *scols,i,j,nz,header[4]; 73713f74950SBarry Smith int fd; 73813f74950SBarry Smith PetscMPIInt size; 73913f74950SBarry Smith PetscInt *rowlengths = 0,M,N,*cols; 74087828ca2SBarry Smith PetscScalar *vals,*svals,*v,*w; 74119bcc07fSBarry Smith MPI_Comm comm = ((PetscObject)viewer)->comm; 74288e32edaSLois Curfman McInnes 7433a40ed3dSBarry Smith PetscFunctionBegin; 744d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 74529bbc08cSBarry Smith if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"view must have one processor"); 746b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 7470752156aSBarry Smith ierr = PetscBinaryRead(fd,header,4,PETSC_INT);CHKERRQ(ierr); 748552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Not matrix object"); 74988e32edaSLois Curfman McInnes M = header[1]; N = header[2]; nz = header[3]; 75088e32edaSLois Curfman McInnes 75190ace30eSBarry Smith if (nz == MATRIX_BINARY_FORMAT_DENSE) { /* matrix in file is dense */ 752f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 753f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,M,N,M,N);CHKERRQ(ierr); 754be5d1d56SKris Buschelman ierr = MatSetType(*A,type);CHKERRQ(ierr); 7555c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(*A,PETSC_NULL);CHKERRQ(ierr); 75690ace30eSBarry Smith B = *A; 75790ace30eSBarry Smith a = (Mat_SeqDense*)B->data; 7584a41a4d3SSatish Balay v = a->v; 7594a41a4d3SSatish Balay /* Allocate some temp space to read in the values and then flip them 7604a41a4d3SSatish Balay from row major to column major */ 761b72907f3SBarry Smith ierr = PetscMalloc((M*N > 0 ? M*N : 1)*sizeof(PetscScalar),&w);CHKERRQ(ierr); 76290ace30eSBarry Smith /* read in nonzero values */ 7634a41a4d3SSatish Balay ierr = PetscBinaryRead(fd,w,M*N,PETSC_SCALAR);CHKERRQ(ierr); 7644a41a4d3SSatish Balay /* now flip the values and store them in the matrix*/ 7654a41a4d3SSatish Balay for (j=0; j<N; j++) { 7664a41a4d3SSatish Balay for (i=0; i<M; i++) { 7674a41a4d3SSatish Balay *v++ =w[i*N+j]; 7684a41a4d3SSatish Balay } 7694a41a4d3SSatish Balay } 770606d414cSSatish Balay ierr = PetscFree(w);CHKERRQ(ierr); 7716d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7726d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 77390ace30eSBarry Smith } else { 77488e32edaSLois Curfman McInnes /* read row lengths */ 77513f74950SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 7760752156aSBarry Smith ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 77788e32edaSLois Curfman McInnes 77888e32edaSLois Curfman McInnes /* create our matrix */ 779f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 780f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,M,N,M,N);CHKERRQ(ierr); 781be5d1d56SKris Buschelman ierr = MatSetType(*A,type);CHKERRQ(ierr); 7825c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(*A,PETSC_NULL);CHKERRQ(ierr); 78388e32edaSLois Curfman McInnes B = *A; 78488e32edaSLois Curfman McInnes a = (Mat_SeqDense*)B->data; 78588e32edaSLois Curfman McInnes v = a->v; 78688e32edaSLois Curfman McInnes 78788e32edaSLois Curfman McInnes /* read column indices and nonzeros */ 78813f74950SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&scols);CHKERRQ(ierr); 789b0a32e0cSBarry Smith cols = scols; 7900752156aSBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 79187828ca2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&svals);CHKERRQ(ierr); 792b0a32e0cSBarry Smith vals = svals; 7930752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 79488e32edaSLois Curfman McInnes 79588e32edaSLois Curfman McInnes /* insert into matrix */ 79688e32edaSLois Curfman McInnes for (i=0; i<M; i++) { 79788e32edaSLois Curfman McInnes for (j=0; j<rowlengths[i]; j++) v[i+M*scols[j]] = svals[j]; 79888e32edaSLois Curfman McInnes svals += rowlengths[i]; scols += rowlengths[i]; 79988e32edaSLois Curfman McInnes } 800606d414cSSatish Balay ierr = PetscFree(vals);CHKERRQ(ierr); 801606d414cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 802606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 80388e32edaSLois Curfman McInnes 8046d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 8056d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 80690ace30eSBarry Smith } 8073a40ed3dSBarry Smith PetscFunctionReturn(0); 80888e32edaSLois Curfman McInnes } 80988e32edaSLois Curfman McInnes 810e090d566SSatish Balay #include "petscsys.h" 811932b0c3eSLois Curfman McInnes 8124a2ae208SSatish Balay #undef __FUNCT__ 8134a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqDense_ASCII" 8146849ba73SBarry Smith static PetscErrorCode MatView_SeqDense_ASCII(Mat A,PetscViewer viewer) 815289bc588SBarry Smith { 816932b0c3eSLois Curfman McInnes Mat_SeqDense *a = (Mat_SeqDense*)A->data; 817dfbe8321SBarry Smith PetscErrorCode ierr; 81813f74950SBarry Smith PetscInt i,j; 8192dcb1b2aSMatthew Knepley const char *name; 82087828ca2SBarry Smith PetscScalar *v; 821f3ef73ceSBarry Smith PetscViewerFormat format; 8225f481a85SSatish Balay #if defined(PETSC_USE_COMPLEX) 8235f481a85SSatish Balay PetscTruth allreal = PETSC_TRUE; 8245f481a85SSatish Balay #endif 825932b0c3eSLois Curfman McInnes 8263a40ed3dSBarry Smith PetscFunctionBegin; 827435da068SBarry Smith ierr = PetscObjectGetName((PetscObject)A,&name);CHKERRQ(ierr); 828b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 829456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 8303a40ed3dSBarry Smith PetscFunctionReturn(0); /* do nothing for now */ 831fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_COMMON) { 832b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr); 833d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++) { 83444cd7ae7SLois Curfman McInnes v = a->v + i; 83577431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i);CHKERRQ(ierr); 836d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 837aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 838329f5518SBarry Smith if (PetscRealPart(*v) != 0.0 && PetscImaginaryPart(*v) != 0.0) { 839a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G + %G i) ",j,PetscRealPart(*v),PetscImaginaryPart(*v));CHKERRQ(ierr); 840329f5518SBarry Smith } else if (PetscRealPart(*v)) { 841a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",j,PetscRealPart(*v));CHKERRQ(ierr); 8426831982aSBarry Smith } 84380cd9d93SLois Curfman McInnes #else 8446831982aSBarry Smith if (*v) { 845a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",j,*v);CHKERRQ(ierr); 8466831982aSBarry Smith } 84780cd9d93SLois Curfman McInnes #endif 8481b807ce4Svictorle v += a->lda; 84980cd9d93SLois Curfman McInnes } 850b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 85180cd9d93SLois Curfman McInnes } 852b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr); 8533a40ed3dSBarry Smith } else { 854b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr); 855aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 85647989497SBarry Smith /* determine if matrix has all real values */ 85747989497SBarry Smith v = a->v; 858d0f46423SBarry Smith for (i=0; i<A->rmap->n*A->cmap->n; i++) { 859ffac6cdbSBarry Smith if (PetscImaginaryPart(v[i])) { allreal = PETSC_FALSE; break ;} 86047989497SBarry Smith } 86147989497SBarry Smith #endif 862fb9695e5SSatish Balay if (format == PETSC_VIEWER_ASCII_MATLAB) { 8633a7fca6bSBarry Smith ierr = PetscObjectGetName((PetscObject)A,&name);CHKERRQ(ierr); 864d0f46423SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"%% Size = %D %D \n",A->rmap->n,A->cmap->n);CHKERRQ(ierr); 865d0f46423SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"%s = zeros(%D,%D);\n",name,A->rmap->n,A->cmap->n);CHKERRQ(ierr); 866fb9695e5SSatish Balay ierr = PetscViewerASCIIPrintf(viewer,"%s = [\n",name);CHKERRQ(ierr); 867ffac6cdbSBarry Smith } 868ffac6cdbSBarry Smith 869d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++) { 870932b0c3eSLois Curfman McInnes v = a->v + i; 871d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 872aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 87347989497SBarry Smith if (allreal) { 874f32d5d43SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"%18.16e ",PetscRealPart(*v));CHKERRQ(ierr); 87547989497SBarry Smith } else { 876f32d5d43SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"%18.16e + %18.16e i ",PetscRealPart(*v),PetscImaginaryPart(*v));CHKERRQ(ierr); 87747989497SBarry Smith } 878289bc588SBarry Smith #else 879f32d5d43SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"%18.16e ",*v);CHKERRQ(ierr); 880289bc588SBarry Smith #endif 8811b807ce4Svictorle v += a->lda; 882289bc588SBarry Smith } 883b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 884289bc588SBarry Smith } 885fb9695e5SSatish Balay if (format == PETSC_VIEWER_ASCII_MATLAB) { 886b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"];\n");CHKERRQ(ierr); 887ffac6cdbSBarry Smith } 888b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr); 889da3a660dSBarry Smith } 890b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 8913a40ed3dSBarry Smith PetscFunctionReturn(0); 892289bc588SBarry Smith } 893289bc588SBarry Smith 8944a2ae208SSatish Balay #undef __FUNCT__ 8954a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqDense_Binary" 8966849ba73SBarry Smith static PetscErrorCode MatView_SeqDense_Binary(Mat A,PetscViewer viewer) 897932b0c3eSLois Curfman McInnes { 898932b0c3eSLois Curfman McInnes Mat_SeqDense *a = (Mat_SeqDense*)A->data; 8996849ba73SBarry Smith PetscErrorCode ierr; 90013f74950SBarry Smith int fd; 901d0f46423SBarry Smith PetscInt ict,j,n = A->cmap->n,m = A->rmap->n,i,*col_lens,nz = m*n; 90287828ca2SBarry Smith PetscScalar *v,*anonz,*vals; 903f3ef73ceSBarry Smith PetscViewerFormat format; 904932b0c3eSLois Curfman McInnes 9053a40ed3dSBarry Smith PetscFunctionBegin; 906b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 90790ace30eSBarry Smith 908b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 9097973ad04SBarry Smith if (format == PETSC_VIEWER_NATIVE) { 91090ace30eSBarry Smith /* store the matrix as a dense matrix */ 91113f74950SBarry Smith ierr = PetscMalloc(4*sizeof(PetscInt),&col_lens);CHKERRQ(ierr); 912552e946dSBarry Smith col_lens[0] = MAT_FILE_COOKIE; 91390ace30eSBarry Smith col_lens[1] = m; 91490ace30eSBarry Smith col_lens[2] = n; 91590ace30eSBarry Smith col_lens[3] = MATRIX_BINARY_FORMAT_DENSE; 9166f69ff64SBarry Smith ierr = PetscBinaryWrite(fd,col_lens,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 917606d414cSSatish Balay ierr = PetscFree(col_lens);CHKERRQ(ierr); 91890ace30eSBarry Smith 91990ace30eSBarry Smith /* write out matrix, by rows */ 92087828ca2SBarry Smith ierr = PetscMalloc((m*n+1)*sizeof(PetscScalar),&vals);CHKERRQ(ierr); 92190ace30eSBarry Smith v = a->v; 92290ace30eSBarry Smith for (j=0; j<n; j++) { 923578230a0SSatish Balay for (i=0; i<m; i++) { 924578230a0SSatish Balay vals[j + i*n] = *v++; 92590ace30eSBarry Smith } 92690ace30eSBarry Smith } 9276f69ff64SBarry Smith ierr = PetscBinaryWrite(fd,vals,n*m,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 928606d414cSSatish Balay ierr = PetscFree(vals);CHKERRQ(ierr); 92990ace30eSBarry Smith } else { 93013f74950SBarry Smith ierr = PetscMalloc((4+nz)*sizeof(PetscInt),&col_lens);CHKERRQ(ierr); 931552e946dSBarry Smith col_lens[0] = MAT_FILE_COOKIE; 932932b0c3eSLois Curfman McInnes col_lens[1] = m; 933932b0c3eSLois Curfman McInnes col_lens[2] = n; 934932b0c3eSLois Curfman McInnes col_lens[3] = nz; 935932b0c3eSLois Curfman McInnes 936932b0c3eSLois Curfman McInnes /* store lengths of each row and write (including header) to file */ 937932b0c3eSLois Curfman McInnes for (i=0; i<m; i++) col_lens[4+i] = n; 9386f69ff64SBarry Smith ierr = PetscBinaryWrite(fd,col_lens,4+m,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 939932b0c3eSLois Curfman McInnes 940932b0c3eSLois Curfman McInnes /* Possibly should write in smaller increments, not whole matrix at once? */ 941932b0c3eSLois Curfman McInnes /* store column indices (zero start index) */ 942932b0c3eSLois Curfman McInnes ict = 0; 943932b0c3eSLois Curfman McInnes for (i=0; i<m; i++) { 944932b0c3eSLois Curfman McInnes for (j=0; j<n; j++) col_lens[ict++] = j; 945932b0c3eSLois Curfman McInnes } 9466f69ff64SBarry Smith ierr = PetscBinaryWrite(fd,col_lens,nz,PETSC_INT,PETSC_FALSE);CHKERRQ(ierr); 947606d414cSSatish Balay ierr = PetscFree(col_lens);CHKERRQ(ierr); 948932b0c3eSLois Curfman McInnes 949932b0c3eSLois Curfman McInnes /* store nonzero values */ 95087828ca2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&anonz);CHKERRQ(ierr); 951932b0c3eSLois Curfman McInnes ict = 0; 952932b0c3eSLois Curfman McInnes for (i=0; i<m; i++) { 953932b0c3eSLois Curfman McInnes v = a->v + i; 954932b0c3eSLois Curfman McInnes for (j=0; j<n; j++) { 9551b807ce4Svictorle anonz[ict++] = *v; v += a->lda; 956932b0c3eSLois Curfman McInnes } 957932b0c3eSLois Curfman McInnes } 9586f69ff64SBarry Smith ierr = PetscBinaryWrite(fd,anonz,nz,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 959606d414cSSatish Balay ierr = PetscFree(anonz);CHKERRQ(ierr); 96090ace30eSBarry Smith } 9613a40ed3dSBarry Smith PetscFunctionReturn(0); 962932b0c3eSLois Curfman McInnes } 963932b0c3eSLois Curfman McInnes 9644a2ae208SSatish Balay #undef __FUNCT__ 9654a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqDense_Draw_Zoom" 966dfbe8321SBarry Smith PetscErrorCode MatView_SeqDense_Draw_Zoom(PetscDraw draw,void *Aa) 967f1af5d2fSBarry Smith { 968f1af5d2fSBarry Smith Mat A = (Mat) Aa; 969f1af5d2fSBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 9706849ba73SBarry Smith PetscErrorCode ierr; 971d0f46423SBarry Smith PetscInt m = A->rmap->n,n = A->cmap->n,color,i,j; 97287828ca2SBarry Smith PetscScalar *v = a->v; 973b0a32e0cSBarry Smith PetscViewer viewer; 974b0a32e0cSBarry Smith PetscDraw popup; 975329f5518SBarry Smith PetscReal xl,yl,xr,yr,x_l,x_r,y_l,y_r,scale,maxv = 0.0; 976f3ef73ceSBarry Smith PetscViewerFormat format; 977f1af5d2fSBarry Smith 978f1af5d2fSBarry Smith PetscFunctionBegin; 979f1af5d2fSBarry Smith 980f1af5d2fSBarry Smith ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr); 981b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 982b0a32e0cSBarry Smith ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr); 983f1af5d2fSBarry Smith 984f1af5d2fSBarry Smith /* Loop over matrix elements drawing boxes */ 985fb9695e5SSatish Balay if (format != PETSC_VIEWER_DRAW_CONTOUR) { 986f1af5d2fSBarry Smith /* Blue for negative and Red for positive */ 987b0a32e0cSBarry Smith color = PETSC_DRAW_BLUE; 988f1af5d2fSBarry Smith for(j = 0; j < n; j++) { 989f1af5d2fSBarry Smith x_l = j; 990f1af5d2fSBarry Smith x_r = x_l + 1.0; 991f1af5d2fSBarry Smith for(i = 0; i < m; i++) { 992f1af5d2fSBarry Smith y_l = m - i - 1.0; 993f1af5d2fSBarry Smith y_r = y_l + 1.0; 994f1af5d2fSBarry Smith #if defined(PETSC_USE_COMPLEX) 995329f5518SBarry Smith if (PetscRealPart(v[j*m+i]) > 0.) { 996b0a32e0cSBarry Smith color = PETSC_DRAW_RED; 997329f5518SBarry Smith } else if (PetscRealPart(v[j*m+i]) < 0.) { 998b0a32e0cSBarry Smith color = PETSC_DRAW_BLUE; 999f1af5d2fSBarry Smith } else { 1000f1af5d2fSBarry Smith continue; 1001f1af5d2fSBarry Smith } 1002f1af5d2fSBarry Smith #else 1003f1af5d2fSBarry Smith if (v[j*m+i] > 0.) { 1004b0a32e0cSBarry Smith color = PETSC_DRAW_RED; 1005f1af5d2fSBarry Smith } else if (v[j*m+i] < 0.) { 1006b0a32e0cSBarry Smith color = PETSC_DRAW_BLUE; 1007f1af5d2fSBarry Smith } else { 1008f1af5d2fSBarry Smith continue; 1009f1af5d2fSBarry Smith } 1010f1af5d2fSBarry Smith #endif 1011b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr); 1012f1af5d2fSBarry Smith } 1013f1af5d2fSBarry Smith } 1014f1af5d2fSBarry Smith } else { 1015f1af5d2fSBarry Smith /* use contour shading to indicate magnitude of values */ 1016f1af5d2fSBarry Smith /* first determine max of all nonzero values */ 1017f1af5d2fSBarry Smith for(i = 0; i < m*n; i++) { 1018f1af5d2fSBarry Smith if (PetscAbsScalar(v[i]) > maxv) maxv = PetscAbsScalar(v[i]); 1019f1af5d2fSBarry Smith } 1020b0a32e0cSBarry Smith scale = (245.0 - PETSC_DRAW_BASIC_COLORS)/maxv; 1021b0a32e0cSBarry Smith ierr = PetscDrawGetPopup(draw,&popup);CHKERRQ(ierr); 1022b0a32e0cSBarry Smith if (popup) {ierr = PetscDrawScalePopup(popup,0.0,maxv);CHKERRQ(ierr);} 1023f1af5d2fSBarry Smith for(j = 0; j < n; j++) { 1024f1af5d2fSBarry Smith x_l = j; 1025f1af5d2fSBarry Smith x_r = x_l + 1.0; 1026f1af5d2fSBarry Smith for(i = 0; i < m; i++) { 1027f1af5d2fSBarry Smith y_l = m - i - 1.0; 1028f1af5d2fSBarry Smith y_r = y_l + 1.0; 1029b0a32e0cSBarry Smith color = PETSC_DRAW_BASIC_COLORS + (int)(scale*PetscAbsScalar(v[j*m+i])); 1030b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color);CHKERRQ(ierr); 1031f1af5d2fSBarry Smith } 1032f1af5d2fSBarry Smith } 1033f1af5d2fSBarry Smith } 1034f1af5d2fSBarry Smith PetscFunctionReturn(0); 1035f1af5d2fSBarry Smith } 1036f1af5d2fSBarry Smith 10374a2ae208SSatish Balay #undef __FUNCT__ 10384a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqDense_Draw" 1039dfbe8321SBarry Smith PetscErrorCode MatView_SeqDense_Draw(Mat A,PetscViewer viewer) 1040f1af5d2fSBarry Smith { 1041b0a32e0cSBarry Smith PetscDraw draw; 1042f1af5d2fSBarry Smith PetscTruth isnull; 1043329f5518SBarry Smith PetscReal xr,yr,xl,yl,h,w; 1044dfbe8321SBarry Smith PetscErrorCode ierr; 1045f1af5d2fSBarry Smith 1046f1af5d2fSBarry Smith PetscFunctionBegin; 1047b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 1048b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 1049abc0a331SBarry Smith if (isnull) PetscFunctionReturn(0); 1050f1af5d2fSBarry Smith 1051f1af5d2fSBarry Smith ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr); 1052d0f46423SBarry Smith xr = A->cmap->n; yr = A->rmap->n; h = yr/10.0; w = xr/10.0; 1053f1af5d2fSBarry Smith xr += w; yr += h; xl = -w; yl = -h; 1054b0a32e0cSBarry Smith ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr); 1055b0a32e0cSBarry Smith ierr = PetscDrawZoom(draw,MatView_SeqDense_Draw_Zoom,A);CHKERRQ(ierr); 1056f1af5d2fSBarry Smith ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",PETSC_NULL);CHKERRQ(ierr); 1057f1af5d2fSBarry Smith PetscFunctionReturn(0); 1058f1af5d2fSBarry Smith } 1059f1af5d2fSBarry Smith 10604a2ae208SSatish Balay #undef __FUNCT__ 10614a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqDense" 1062dfbe8321SBarry Smith PetscErrorCode MatView_SeqDense(Mat A,PetscViewer viewer) 1063932b0c3eSLois Curfman McInnes { 1064dfbe8321SBarry Smith PetscErrorCode ierr; 10656805f65bSBarry Smith PetscTruth iascii,isbinary,isdraw; 1066932b0c3eSLois Curfman McInnes 10673a40ed3dSBarry Smith PetscFunctionBegin; 106832077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 1069fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 1070fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 10710f5bd95cSBarry Smith 1072c45a1595SBarry Smith if (iascii) { 1073c45a1595SBarry Smith ierr = MatView_SeqDense_ASCII(A,viewer);CHKERRQ(ierr); 10740f5bd95cSBarry Smith } else if (isbinary) { 10753a40ed3dSBarry Smith ierr = MatView_SeqDense_Binary(A,viewer);CHKERRQ(ierr); 1076f1af5d2fSBarry Smith } else if (isdraw) { 1077f1af5d2fSBarry Smith ierr = MatView_SeqDense_Draw(A,viewer);CHKERRQ(ierr); 10785cd90555SBarry Smith } else { 1079958c9bccSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by dense matrix",((PetscObject)viewer)->type_name); 1080932b0c3eSLois Curfman McInnes } 10813a40ed3dSBarry Smith PetscFunctionReturn(0); 1082932b0c3eSLois Curfman McInnes } 1083289bc588SBarry Smith 10844a2ae208SSatish Balay #undef __FUNCT__ 10854a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_SeqDense" 1086dfbe8321SBarry Smith PetscErrorCode MatDestroy_SeqDense(Mat mat) 1087289bc588SBarry Smith { 1088ec8511deSBarry Smith Mat_SeqDense *l = (Mat_SeqDense*)mat->data; 1089dfbe8321SBarry Smith PetscErrorCode ierr; 109090f02eecSBarry Smith 10913a40ed3dSBarry Smith PetscFunctionBegin; 1092aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1093d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows %D Cols %D",mat->rmap->n,mat->cmap->n); 1094a5a9c739SBarry Smith #endif 109505b42c5fSBarry Smith ierr = PetscFree(l->pivots);CHKERRQ(ierr); 10966857c123SSatish Balay if (!l->user_alloc) {ierr = PetscFree(l->v);CHKERRQ(ierr);} 1097606d414cSSatish Balay ierr = PetscFree(l);CHKERRQ(ierr); 1098dbd8c25aSHong Zhang 1099dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 1100901853e0SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatSeqDenseSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 11014ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMult_seqaij_seqdense_C","",PETSC_NULL);CHKERRQ(ierr); 11024ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMultSymbolic_seqaij_seqdense_C","",PETSC_NULL);CHKERRQ(ierr); 11034ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMultNumeric_seqaij_seqdense_C","",PETSC_NULL);CHKERRQ(ierr); 11043a40ed3dSBarry Smith PetscFunctionReturn(0); 1105289bc588SBarry Smith } 1106289bc588SBarry Smith 11074a2ae208SSatish Balay #undef __FUNCT__ 11084a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_SeqDense" 1109fc4dec0aSBarry Smith PetscErrorCode MatTranspose_SeqDense(Mat A,MatReuse reuse,Mat *matout) 1110289bc588SBarry Smith { 1111c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 11126849ba73SBarry Smith PetscErrorCode ierr; 111313f74950SBarry Smith PetscInt k,j,m,n,M; 111487828ca2SBarry Smith PetscScalar *v,tmp; 111548b35521SBarry Smith 11163a40ed3dSBarry Smith PetscFunctionBegin; 1117d0f46423SBarry Smith v = mat->v; m = A->rmap->n; M = mat->lda; n = A->cmap->n; 1118e9695a30SBarry Smith if (reuse == MAT_REUSE_MATRIX && *matout == A) { /* in place transpose */ 1119a5ce6ee0Svictorle if (m != n) { 1120634064b4SBarry Smith SETERRQ(PETSC_ERR_SUP,"Can not transpose non-square matrix in place"); 1121d64ed03dSBarry Smith } else { 1122d3e5ee88SLois Curfman McInnes for (j=0; j<m; j++) { 1123289bc588SBarry Smith for (k=0; k<j; k++) { 11241b807ce4Svictorle tmp = v[j + k*M]; 11251b807ce4Svictorle v[j + k*M] = v[k + j*M]; 11261b807ce4Svictorle v[k + j*M] = tmp; 1127289bc588SBarry Smith } 1128289bc588SBarry Smith } 1129d64ed03dSBarry Smith } 11303a40ed3dSBarry Smith } else { /* out-of-place transpose */ 1131d3e5ee88SLois Curfman McInnes Mat tmat; 1132ec8511deSBarry Smith Mat_SeqDense *tmatd; 113387828ca2SBarry Smith PetscScalar *v2; 1134ea709b57SSatish Balay 1135fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX) { 11367adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&tmat);CHKERRQ(ierr); 1137d0f46423SBarry Smith ierr = MatSetSizes(tmat,A->cmap->n,A->rmap->n,A->cmap->n,A->rmap->n);CHKERRQ(ierr); 11387adad957SLisandro Dalcin ierr = MatSetType(tmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 11395c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(tmat,PETSC_NULL);CHKERRQ(ierr); 1140fc4dec0aSBarry Smith } else { 1141fc4dec0aSBarry Smith tmat = *matout; 1142fc4dec0aSBarry Smith } 1143ec8511deSBarry Smith tmatd = (Mat_SeqDense*)tmat->data; 11440de55854SLois Curfman McInnes v = mat->v; v2 = tmatd->v; 1145d3e5ee88SLois Curfman McInnes for (j=0; j<n; j++) { 11461b807ce4Svictorle for (k=0; k<m; k++) v2[j + k*n] = v[k + j*M]; 1147d3e5ee88SLois Curfman McInnes } 11486d4a8577SBarry Smith ierr = MatAssemblyBegin(tmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 11496d4a8577SBarry Smith ierr = MatAssemblyEnd(tmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1150d3e5ee88SLois Curfman McInnes *matout = tmat; 115148b35521SBarry Smith } 11523a40ed3dSBarry Smith PetscFunctionReturn(0); 1153289bc588SBarry Smith } 1154289bc588SBarry Smith 11554a2ae208SSatish Balay #undef __FUNCT__ 11564a2ae208SSatish Balay #define __FUNCT__ "MatEqual_SeqDense" 1157dfbe8321SBarry Smith PetscErrorCode MatEqual_SeqDense(Mat A1,Mat A2,PetscTruth *flg) 1158289bc588SBarry Smith { 1159c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat1 = (Mat_SeqDense*)A1->data; 1160c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat2 = (Mat_SeqDense*)A2->data; 116113f74950SBarry Smith PetscInt i,j; 116287828ca2SBarry Smith PetscScalar *v1 = mat1->v,*v2 = mat2->v; 11639ea5d5aeSSatish Balay 11643a40ed3dSBarry Smith PetscFunctionBegin; 1165d0f46423SBarry Smith if (A1->rmap->n != A2->rmap->n) {*flg = PETSC_FALSE; PetscFunctionReturn(0);} 1166d0f46423SBarry Smith if (A1->cmap->n != A2->cmap->n) {*flg = PETSC_FALSE; PetscFunctionReturn(0);} 1167d0f46423SBarry Smith for (i=0; i<A1->rmap->n; i++) { 11681b807ce4Svictorle v1 = mat1->v+i; v2 = mat2->v+i; 1169d0f46423SBarry Smith for (j=0; j<A1->cmap->n; j++) { 11703a40ed3dSBarry Smith if (*v1 != *v2) {*flg = PETSC_FALSE; PetscFunctionReturn(0);} 11711b807ce4Svictorle v1 += mat1->lda; v2 += mat2->lda; 11721b807ce4Svictorle } 1173289bc588SBarry Smith } 117477c4ece6SBarry Smith *flg = PETSC_TRUE; 11753a40ed3dSBarry Smith PetscFunctionReturn(0); 1176289bc588SBarry Smith } 1177289bc588SBarry Smith 11784a2ae208SSatish Balay #undef __FUNCT__ 11794a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_SeqDense" 1180dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_SeqDense(Mat A,Vec v) 1181289bc588SBarry Smith { 1182c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 1183dfbe8321SBarry Smith PetscErrorCode ierr; 118413f74950SBarry Smith PetscInt i,n,len; 118587828ca2SBarry Smith PetscScalar *x,zero = 0.0; 118644cd7ae7SLois Curfman McInnes 11873a40ed3dSBarry Smith PetscFunctionBegin; 11882dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 11897a97a34bSBarry Smith ierr = VecGetSize(v,&n);CHKERRQ(ierr); 11901ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 1191d0f46423SBarry Smith len = PetscMin(A->rmap->n,A->cmap->n); 1192d0f46423SBarry Smith if (n != A->rmap->n) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 119344cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 11941b807ce4Svictorle x[i] = mat->v[i*mat->lda + i]; 1195289bc588SBarry Smith } 11961ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 11973a40ed3dSBarry Smith PetscFunctionReturn(0); 1198289bc588SBarry Smith } 1199289bc588SBarry Smith 12004a2ae208SSatish Balay #undef __FUNCT__ 12014a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_SeqDense" 1202dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_SeqDense(Mat A,Vec ll,Vec rr) 1203289bc588SBarry Smith { 1204c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 120587828ca2SBarry Smith PetscScalar *l,*r,x,*v; 1206dfbe8321SBarry Smith PetscErrorCode ierr; 1207d0f46423SBarry Smith PetscInt i,j,m = A->rmap->n,n = A->cmap->n; 120855659b69SBarry Smith 12093a40ed3dSBarry Smith PetscFunctionBegin; 121028988994SBarry Smith if (ll) { 12117a97a34bSBarry Smith ierr = VecGetSize(ll,&m);CHKERRQ(ierr); 12121ebc52fbSHong Zhang ierr = VecGetArray(ll,&l);CHKERRQ(ierr); 1213d0f46423SBarry Smith if (m != A->rmap->n) SETERRQ(PETSC_ERR_ARG_SIZ,"Left scaling vec wrong size"); 1214da3a660dSBarry Smith for (i=0; i<m; i++) { 1215da3a660dSBarry Smith x = l[i]; 1216da3a660dSBarry Smith v = mat->v + i; 1217da3a660dSBarry Smith for (j=0; j<n; j++) { (*v) *= x; v+= m;} 1218da3a660dSBarry Smith } 12191ebc52fbSHong Zhang ierr = VecRestoreArray(ll,&l);CHKERRQ(ierr); 1220efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 1221da3a660dSBarry Smith } 122228988994SBarry Smith if (rr) { 12237a97a34bSBarry Smith ierr = VecGetSize(rr,&n);CHKERRQ(ierr); 12241ebc52fbSHong Zhang ierr = VecGetArray(rr,&r);CHKERRQ(ierr); 1225d0f46423SBarry Smith if (n != A->cmap->n) SETERRQ(PETSC_ERR_ARG_SIZ,"Right scaling vec wrong size"); 1226da3a660dSBarry Smith for (i=0; i<n; i++) { 1227da3a660dSBarry Smith x = r[i]; 1228da3a660dSBarry Smith v = mat->v + i*m; 1229da3a660dSBarry Smith for (j=0; j<m; j++) { (*v++) *= x;} 1230da3a660dSBarry Smith } 12311ebc52fbSHong Zhang ierr = VecRestoreArray(rr,&r);CHKERRQ(ierr); 1232efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 1233da3a660dSBarry Smith } 12343a40ed3dSBarry Smith PetscFunctionReturn(0); 1235289bc588SBarry Smith } 1236289bc588SBarry Smith 12374a2ae208SSatish Balay #undef __FUNCT__ 12384a2ae208SSatish Balay #define __FUNCT__ "MatNorm_SeqDense" 1239dfbe8321SBarry Smith PetscErrorCode MatNorm_SeqDense(Mat A,NormType type,PetscReal *nrm) 1240289bc588SBarry Smith { 1241c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 124287828ca2SBarry Smith PetscScalar *v = mat->v; 1243329f5518SBarry Smith PetscReal sum = 0.0; 1244d0f46423SBarry Smith PetscInt lda=mat->lda,m=A->rmap->n,i,j; 1245efee365bSSatish Balay PetscErrorCode ierr; 124655659b69SBarry Smith 12473a40ed3dSBarry Smith PetscFunctionBegin; 1248289bc588SBarry Smith if (type == NORM_FROBENIUS) { 1249a5ce6ee0Svictorle if (lda>m) { 1250d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 1251a5ce6ee0Svictorle v = mat->v+j*lda; 1252a5ce6ee0Svictorle for (i=0; i<m; i++) { 1253a5ce6ee0Svictorle #if defined(PETSC_USE_COMPLEX) 1254a5ce6ee0Svictorle sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 1255a5ce6ee0Svictorle #else 1256a5ce6ee0Svictorle sum += (*v)*(*v); v++; 1257a5ce6ee0Svictorle #endif 1258a5ce6ee0Svictorle } 1259a5ce6ee0Svictorle } 1260a5ce6ee0Svictorle } else { 1261d0f46423SBarry Smith for (i=0; i<A->cmap->n*A->rmap->n; i++) { 1262aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 1263329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 1264289bc588SBarry Smith #else 1265289bc588SBarry Smith sum += (*v)*(*v); v++; 1266289bc588SBarry Smith #endif 1267289bc588SBarry Smith } 1268a5ce6ee0Svictorle } 1269064f8208SBarry Smith *nrm = sqrt(sum); 1270dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*A->cmap->n*A->rmap->n);CHKERRQ(ierr); 12713a40ed3dSBarry Smith } else if (type == NORM_1) { 1272064f8208SBarry Smith *nrm = 0.0; 1273d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 12741b807ce4Svictorle v = mat->v + j*mat->lda; 1275289bc588SBarry Smith sum = 0.0; 1276d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++) { 127733a8263dSBarry Smith sum += PetscAbsScalar(*v); v++; 1278289bc588SBarry Smith } 1279064f8208SBarry Smith if (sum > *nrm) *nrm = sum; 1280289bc588SBarry Smith } 1281d0f46423SBarry Smith ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr); 12823a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { 1283064f8208SBarry Smith *nrm = 0.0; 1284d0f46423SBarry Smith for (j=0; j<A->rmap->n; j++) { 1285289bc588SBarry Smith v = mat->v + j; 1286289bc588SBarry Smith sum = 0.0; 1287d0f46423SBarry Smith for (i=0; i<A->cmap->n; i++) { 12881b807ce4Svictorle sum += PetscAbsScalar(*v); v += mat->lda; 1289289bc588SBarry Smith } 1290064f8208SBarry Smith if (sum > *nrm) *nrm = sum; 1291289bc588SBarry Smith } 1292d0f46423SBarry Smith ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr); 12933a40ed3dSBarry Smith } else { 129429bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No two norm"); 1295289bc588SBarry Smith } 12963a40ed3dSBarry Smith PetscFunctionReturn(0); 1297289bc588SBarry Smith } 1298289bc588SBarry Smith 12994a2ae208SSatish Balay #undef __FUNCT__ 13004a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_SeqDense" 13014e0d8c25SBarry Smith PetscErrorCode MatSetOption_SeqDense(Mat A,MatOption op,PetscTruth flg) 1302289bc588SBarry Smith { 1303c0bbcb79SLois Curfman McInnes Mat_SeqDense *aij = (Mat_SeqDense*)A->data; 130463ba0a88SBarry Smith PetscErrorCode ierr; 130567e560aaSBarry Smith 13063a40ed3dSBarry Smith PetscFunctionBegin; 1307b5a2b587SKris Buschelman switch (op) { 1308b5a2b587SKris Buschelman case MAT_ROW_ORIENTED: 13094e0d8c25SBarry Smith aij->roworiented = flg; 1310b5a2b587SKris Buschelman break; 1311512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1312b5a2b587SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 13133971808eSMatthew Knepley case MAT_NEW_NONZERO_ALLOCATION_ERR: 13144e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1315b5a2b587SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1316b5a2b587SKris Buschelman case MAT_USE_HASH_TABLE: 131777e54ba9SKris Buschelman case MAT_SYMMETRIC: 131877e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 13199a4540c5SBarry Smith case MAT_HERMITIAN: 13209a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1321600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 1322290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 132377e54ba9SKris Buschelman break; 1324b5a2b587SKris Buschelman default: 1325600fe468SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 13263a40ed3dSBarry Smith } 13273a40ed3dSBarry Smith PetscFunctionReturn(0); 1328289bc588SBarry Smith } 1329289bc588SBarry Smith 13304a2ae208SSatish Balay #undef __FUNCT__ 13314a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_SeqDense" 1332dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_SeqDense(Mat A) 13336f0a148fSBarry Smith { 1334ec8511deSBarry Smith Mat_SeqDense *l = (Mat_SeqDense*)A->data; 13356849ba73SBarry Smith PetscErrorCode ierr; 1336d0f46423SBarry Smith PetscInt lda=l->lda,m=A->rmap->n,j; 13373a40ed3dSBarry Smith 13383a40ed3dSBarry Smith PetscFunctionBegin; 1339a5ce6ee0Svictorle if (lda>m) { 1340d0f46423SBarry Smith for (j=0; j<A->cmap->n; j++) { 1341a5ce6ee0Svictorle ierr = PetscMemzero(l->v+j*lda,m*sizeof(PetscScalar));CHKERRQ(ierr); 1342a5ce6ee0Svictorle } 1343a5ce6ee0Svictorle } else { 1344d0f46423SBarry Smith ierr = PetscMemzero(l->v,A->rmap->n*A->cmap->n*sizeof(PetscScalar));CHKERRQ(ierr); 1345a5ce6ee0Svictorle } 13463a40ed3dSBarry Smith PetscFunctionReturn(0); 13476f0a148fSBarry Smith } 13486f0a148fSBarry Smith 13494a2ae208SSatish Balay #undef __FUNCT__ 13504a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqDense" 1351f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_SeqDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag) 13526f0a148fSBarry Smith { 1353ec8511deSBarry Smith Mat_SeqDense *l = (Mat_SeqDense*)A->data; 1354d0f46423SBarry Smith PetscInt n = A->cmap->n,i,j; 135587828ca2SBarry Smith PetscScalar *slot; 135655659b69SBarry Smith 13573a40ed3dSBarry Smith PetscFunctionBegin; 13586f0a148fSBarry Smith for (i=0; i<N; i++) { 13596f0a148fSBarry Smith slot = l->v + rows[i]; 13606f0a148fSBarry Smith for (j=0; j<n; j++) { *slot = 0.0; slot += n;} 13616f0a148fSBarry Smith } 1362f4df32b1SMatthew Knepley if (diag != 0.0) { 13636f0a148fSBarry Smith for (i=0; i<N; i++) { 13646f0a148fSBarry Smith slot = l->v + (n+1)*rows[i]; 1365f4df32b1SMatthew Knepley *slot = diag; 13666f0a148fSBarry Smith } 13676f0a148fSBarry Smith } 13683a40ed3dSBarry Smith PetscFunctionReturn(0); 13696f0a148fSBarry Smith } 1370557bce09SLois Curfman McInnes 13714a2ae208SSatish Balay #undef __FUNCT__ 13724a2ae208SSatish Balay #define __FUNCT__ "MatGetArray_SeqDense" 1373dfbe8321SBarry Smith PetscErrorCode MatGetArray_SeqDense(Mat A,PetscScalar *array[]) 137464e87e97SBarry Smith { 1375c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 13763a40ed3dSBarry Smith 13773a40ed3dSBarry Smith PetscFunctionBegin; 1378d0f46423SBarry Smith if (mat->lda != A->rmap->n) SETERRQ(PETSC_ERR_SUP,"Cannot get array for Dense matrices with LDA different from number of rows"); 137964e87e97SBarry Smith *array = mat->v; 13803a40ed3dSBarry Smith PetscFunctionReturn(0); 138164e87e97SBarry Smith } 13820754003eSLois Curfman McInnes 13834a2ae208SSatish Balay #undef __FUNCT__ 13844a2ae208SSatish Balay #define __FUNCT__ "MatRestoreArray_SeqDense" 1385dfbe8321SBarry Smith PetscErrorCode MatRestoreArray_SeqDense(Mat A,PetscScalar *array[]) 1386ff14e315SSatish Balay { 13873a40ed3dSBarry Smith PetscFunctionBegin; 138809b544d4SBarry Smith *array = 0; /* user cannot accidently use the array later */ 13893a40ed3dSBarry Smith PetscFunctionReturn(0); 1390ff14e315SSatish Balay } 13910754003eSLois Curfman McInnes 13924a2ae208SSatish Balay #undef __FUNCT__ 13934a2ae208SSatish Balay #define __FUNCT__ "MatGetSubMatrix_SeqDense" 139413f74950SBarry Smith static PetscErrorCode MatGetSubMatrix_SeqDense(Mat A,IS isrow,IS iscol,PetscInt cs,MatReuse scall,Mat *B) 13950754003eSLois Curfman McInnes { 1396c0bbcb79SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)A->data; 13976849ba73SBarry Smith PetscErrorCode ierr; 13985d0c19d7SBarry Smith PetscInt i,j,nrows,ncols; 13995d0c19d7SBarry Smith const PetscInt *irow,*icol; 140087828ca2SBarry Smith PetscScalar *av,*bv,*v = mat->v; 14010754003eSLois Curfman McInnes Mat newmat; 14020754003eSLois Curfman McInnes 14033a40ed3dSBarry Smith PetscFunctionBegin; 140478b31e54SBarry Smith ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 140578b31e54SBarry Smith ierr = ISGetIndices(iscol,&icol);CHKERRQ(ierr); 1406e03a110bSBarry Smith ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 1407e03a110bSBarry Smith ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 14080754003eSLois Curfman McInnes 1409182d2002SSatish Balay /* Check submatrixcall */ 1410182d2002SSatish Balay if (scall == MAT_REUSE_MATRIX) { 141113f74950SBarry Smith PetscInt n_cols,n_rows; 1412182d2002SSatish Balay ierr = MatGetSize(*B,&n_rows,&n_cols);CHKERRQ(ierr); 141321a2c019SBarry Smith if (n_rows != nrows || n_cols != ncols) { 141421a2c019SBarry Smith /* resize the result result matrix to match number of requested rows/columns */ 1415c61587bbSBarry Smith ierr = MatSetSizes(*B,nrows,ncols,nrows,ncols);CHKERRQ(ierr); 141621a2c019SBarry Smith } 1417182d2002SSatish Balay newmat = *B; 1418182d2002SSatish Balay } else { 14190754003eSLois Curfman McInnes /* Create and fill new matrix */ 14207adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&newmat);CHKERRQ(ierr); 1421f69a0ea3SMatthew Knepley ierr = MatSetSizes(newmat,nrows,ncols,nrows,ncols);CHKERRQ(ierr); 14227adad957SLisandro Dalcin ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 14235c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(newmat,PETSC_NULL);CHKERRQ(ierr); 1424182d2002SSatish Balay } 1425182d2002SSatish Balay 1426182d2002SSatish Balay /* Now extract the data pointers and do the copy,column at a time */ 1427182d2002SSatish Balay bv = ((Mat_SeqDense*)newmat->data)->v; 1428182d2002SSatish Balay 1429182d2002SSatish Balay for (i=0; i<ncols; i++) { 14306de62eeeSBarry Smith av = v + mat->lda*icol[i]; 1431182d2002SSatish Balay for (j=0; j<nrows; j++) { 1432182d2002SSatish Balay *bv++ = av[irow[j]]; 14330754003eSLois Curfman McInnes } 14340754003eSLois Curfman McInnes } 1435182d2002SSatish Balay 1436182d2002SSatish Balay /* Assemble the matrices so that the correct flags are set */ 14376d4a8577SBarry Smith ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 14386d4a8577SBarry Smith ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 14390754003eSLois Curfman McInnes 14400754003eSLois Curfman McInnes /* Free work space */ 144178b31e54SBarry Smith ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 144278b31e54SBarry Smith ierr = ISRestoreIndices(iscol,&icol);CHKERRQ(ierr); 1443182d2002SSatish Balay *B = newmat; 14443a40ed3dSBarry Smith PetscFunctionReturn(0); 14450754003eSLois Curfman McInnes } 14460754003eSLois Curfman McInnes 14474a2ae208SSatish Balay #undef __FUNCT__ 14484a2ae208SSatish Balay #define __FUNCT__ "MatGetSubMatrices_SeqDense" 144913f74950SBarry Smith PetscErrorCode MatGetSubMatrices_SeqDense(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[]) 1450905e6a2fSBarry Smith { 14516849ba73SBarry Smith PetscErrorCode ierr; 145213f74950SBarry Smith PetscInt i; 1453905e6a2fSBarry Smith 14543a40ed3dSBarry Smith PetscFunctionBegin; 1455905e6a2fSBarry Smith if (scall == MAT_INITIAL_MATRIX) { 1456b0a32e0cSBarry Smith ierr = PetscMalloc((n+1)*sizeof(Mat),B);CHKERRQ(ierr); 1457905e6a2fSBarry Smith } 1458905e6a2fSBarry Smith 1459905e6a2fSBarry Smith for (i=0; i<n; i++) { 14606a6a5d1dSBarry Smith ierr = MatGetSubMatrix_SeqDense(A,irow[i],icol[i],PETSC_DECIDE,scall,&(*B)[i]);CHKERRQ(ierr); 1461905e6a2fSBarry Smith } 14623a40ed3dSBarry Smith PetscFunctionReturn(0); 1463905e6a2fSBarry Smith } 1464905e6a2fSBarry Smith 14654a2ae208SSatish Balay #undef __FUNCT__ 1466c0aa2d19SHong Zhang #define __FUNCT__ "MatAssemblyBegin_SeqDense" 1467c0aa2d19SHong Zhang PetscErrorCode MatAssemblyBegin_SeqDense(Mat mat,MatAssemblyType mode) 1468c0aa2d19SHong Zhang { 1469c0aa2d19SHong Zhang PetscFunctionBegin; 1470c0aa2d19SHong Zhang PetscFunctionReturn(0); 1471c0aa2d19SHong Zhang } 1472c0aa2d19SHong Zhang 1473c0aa2d19SHong Zhang #undef __FUNCT__ 1474c0aa2d19SHong Zhang #define __FUNCT__ "MatAssemblyEnd_SeqDense" 1475c0aa2d19SHong Zhang PetscErrorCode MatAssemblyEnd_SeqDense(Mat mat,MatAssemblyType mode) 1476c0aa2d19SHong Zhang { 1477c0aa2d19SHong Zhang PetscFunctionBegin; 1478c0aa2d19SHong Zhang PetscFunctionReturn(0); 1479c0aa2d19SHong Zhang } 1480c0aa2d19SHong Zhang 1481c0aa2d19SHong Zhang #undef __FUNCT__ 14824a2ae208SSatish Balay #define __FUNCT__ "MatCopy_SeqDense" 1483dfbe8321SBarry Smith PetscErrorCode MatCopy_SeqDense(Mat A,Mat B,MatStructure str) 14844b0e389bSBarry Smith { 14854b0e389bSBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data,*b = (Mat_SeqDense *)B->data; 14866849ba73SBarry Smith PetscErrorCode ierr; 1487d0f46423SBarry Smith PetscInt lda1=a->lda,lda2=b->lda, m=A->rmap->n,n=A->cmap->n, j; 14883a40ed3dSBarry Smith 14893a40ed3dSBarry Smith PetscFunctionBegin; 149033f4a19fSKris Buschelman /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 149133f4a19fSKris Buschelman if (A->ops->copy != B->ops->copy) { 1492cb5b572fSBarry Smith ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 14933a40ed3dSBarry Smith PetscFunctionReturn(0); 14943a40ed3dSBarry Smith } 1495d0f46423SBarry Smith if (m != B->rmap->n || n != B->cmap->n) SETERRQ(PETSC_ERR_ARG_SIZ,"size(B) != size(A)"); 1496a5ce6ee0Svictorle if (lda1>m || lda2>m) { 14970dbb7854Svictorle for (j=0; j<n; j++) { 1498a5ce6ee0Svictorle ierr = PetscMemcpy(b->v+j*lda2,a->v+j*lda1,m*sizeof(PetscScalar));CHKERRQ(ierr); 1499a5ce6ee0Svictorle } 1500a5ce6ee0Svictorle } else { 1501d0f46423SBarry Smith ierr = PetscMemcpy(b->v,a->v,A->rmap->n*A->cmap->n*sizeof(PetscScalar));CHKERRQ(ierr); 1502a5ce6ee0Svictorle } 1503273d9f13SBarry Smith PetscFunctionReturn(0); 1504273d9f13SBarry Smith } 1505273d9f13SBarry Smith 15064a2ae208SSatish Balay #undef __FUNCT__ 15074a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_SeqDense" 1508dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_SeqDense(Mat A) 1509273d9f13SBarry Smith { 1510dfbe8321SBarry Smith PetscErrorCode ierr; 1511273d9f13SBarry Smith 1512273d9f13SBarry Smith PetscFunctionBegin; 1513273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(A,0);CHKERRQ(ierr); 15143a40ed3dSBarry Smith PetscFunctionReturn(0); 15154b0e389bSBarry Smith } 15164b0e389bSBarry Smith 1517284134d9SBarry Smith #undef __FUNCT__ 1518284134d9SBarry Smith #define __FUNCT__ "MatSetSizes_SeqDense" 1519284134d9SBarry Smith PetscErrorCode MatSetSizes_SeqDense(Mat A,PetscInt m,PetscInt n,PetscInt M,PetscInt N) 1520284134d9SBarry Smith { 1521284134d9SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1522284134d9SBarry Smith PetscFunctionBegin; 152321a2c019SBarry Smith /* this will not be called before lda, Mmax, and Nmax have been set */ 1524284134d9SBarry Smith m = PetscMax(m,M); 1525284134d9SBarry Smith n = PetscMax(n,N); 152621a2c019SBarry Smith if (m > a->Mmax) SETERRQ2(PETSC_ERR_SUP,"Cannot yet resize number rows of dense matrix larger then its initial size %d, requested %d",a->lda,(int)m); 1527284134d9SBarry Smith if (n > a->Nmax) SETERRQ2(PETSC_ERR_SUP,"Cannot yet resize number columns of dense matrix larger then its initial size %d, requested %d",a->Nmax,(int)n); 1528dc5cefdeSJed Brown A->rmap->n = A->rmap->N = m; 1529d0f46423SBarry Smith A->cmap->n = A->cmap->N = n; 153021a2c019SBarry Smith if (a->changelda) a->lda = m; 1531284134d9SBarry Smith PetscFunctionReturn(0); 1532284134d9SBarry Smith } 1533170fe5c8SBarry Smith 1534*ba337c44SJed Brown #undef __FUNCT__ 1535*ba337c44SJed Brown #define __FUNCT__ "MatConjugate_SeqDense" 1536*ba337c44SJed Brown static PetscErrorCode MatConjugate_SeqDense(Mat A) 1537*ba337c44SJed Brown { 1538*ba337c44SJed Brown Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1539*ba337c44SJed Brown PetscInt i,nz = A->rmap->n*A->cmap->n; 1540*ba337c44SJed Brown PetscScalar *aa = a->v; 1541*ba337c44SJed Brown 1542*ba337c44SJed Brown PetscFunctionBegin; 1543*ba337c44SJed Brown for (i=0; i<nz; i++) aa[i] = PetscConj(aa[i]); 1544*ba337c44SJed Brown PetscFunctionReturn(0); 1545*ba337c44SJed Brown } 1546*ba337c44SJed Brown 1547*ba337c44SJed Brown #undef __FUNCT__ 1548*ba337c44SJed Brown #define __FUNCT__ "MatRealPart_SeqDense" 1549*ba337c44SJed Brown static PetscErrorCode MatRealPart_SeqDense(Mat A) 1550*ba337c44SJed Brown { 1551*ba337c44SJed Brown Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1552*ba337c44SJed Brown PetscInt i,nz = A->rmap->n*A->cmap->n; 1553*ba337c44SJed Brown PetscScalar *aa = a->v; 1554*ba337c44SJed Brown 1555*ba337c44SJed Brown PetscFunctionBegin; 1556*ba337c44SJed Brown for (i=0; i<nz; i++) aa[i] = PetscRealPart(aa[i]); 1557*ba337c44SJed Brown PetscFunctionReturn(0); 1558*ba337c44SJed Brown } 1559*ba337c44SJed Brown 1560*ba337c44SJed Brown #undef __FUNCT__ 1561*ba337c44SJed Brown #define __FUNCT__ "MatImaginaryPart_SeqDense" 1562*ba337c44SJed Brown static PetscErrorCode MatImaginaryPart_SeqDense(Mat A) 1563*ba337c44SJed Brown { 1564*ba337c44SJed Brown Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1565*ba337c44SJed Brown PetscInt i,nz = A->rmap->n*A->cmap->n; 1566*ba337c44SJed Brown PetscScalar *aa = a->v; 1567*ba337c44SJed Brown 1568*ba337c44SJed Brown PetscFunctionBegin; 1569*ba337c44SJed Brown for (i=0; i<nz; i++) aa[i] = PetscImaginaryPart(aa[i]); 1570*ba337c44SJed Brown PetscFunctionReturn(0); 1571*ba337c44SJed Brown } 1572284134d9SBarry Smith 1573a9fe9ddaSSatish Balay /* ----------------------------------------------------------------*/ 1574a9fe9ddaSSatish Balay #undef __FUNCT__ 1575a9fe9ddaSSatish Balay #define __FUNCT__ "MatMatMult_SeqDense_SeqDense" 1576a9fe9ddaSSatish Balay PetscErrorCode MatMatMult_SeqDense_SeqDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 1577a9fe9ddaSSatish Balay { 1578a9fe9ddaSSatish Balay PetscErrorCode ierr; 1579a9fe9ddaSSatish Balay 1580a9fe9ddaSSatish Balay PetscFunctionBegin; 1581a9fe9ddaSSatish Balay if (scall == MAT_INITIAL_MATRIX){ 1582a9fe9ddaSSatish Balay ierr = MatMatMultSymbolic_SeqDense_SeqDense(A,B,fill,C);CHKERRQ(ierr); 1583a9fe9ddaSSatish Balay } 1584a9fe9ddaSSatish Balay ierr = MatMatMultNumeric_SeqDense_SeqDense(A,B,*C);CHKERRQ(ierr); 1585a9fe9ddaSSatish Balay PetscFunctionReturn(0); 1586a9fe9ddaSSatish Balay } 1587a9fe9ddaSSatish Balay 1588a9fe9ddaSSatish Balay #undef __FUNCT__ 1589a9fe9ddaSSatish Balay #define __FUNCT__ "MatMatMultSymbolic_SeqDense_SeqDense" 1590a9fe9ddaSSatish Balay PetscErrorCode MatMatMultSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat *C) 1591a9fe9ddaSSatish Balay { 1592ee16a9a1SHong Zhang PetscErrorCode ierr; 1593d0f46423SBarry Smith PetscInt m=A->rmap->n,n=B->cmap->n; 1594ee16a9a1SHong Zhang Mat Cmat; 1595a9fe9ddaSSatish Balay 1596ee16a9a1SHong Zhang PetscFunctionBegin; 1597d0f46423SBarry Smith if (A->cmap->n != B->rmap->n) SETERRQ2(PETSC_ERR_ARG_SIZ,"A->cmap->n %d != B->rmap->n %d\n",A->cmap->n,B->rmap->n); 1598ee16a9a1SHong Zhang ierr = MatCreate(PETSC_COMM_SELF,&Cmat);CHKERRQ(ierr); 1599ee16a9a1SHong Zhang ierr = MatSetSizes(Cmat,m,n,m,n);CHKERRQ(ierr); 1600ee16a9a1SHong Zhang ierr = MatSetType(Cmat,MATSEQDENSE);CHKERRQ(ierr); 1601ee16a9a1SHong Zhang ierr = MatSeqDenseSetPreallocation(Cmat,PETSC_NULL);CHKERRQ(ierr); 1602ee16a9a1SHong Zhang Cmat->assembled = PETSC_TRUE; 1603ee16a9a1SHong Zhang *C = Cmat; 1604ee16a9a1SHong Zhang PetscFunctionReturn(0); 1605ee16a9a1SHong Zhang } 1606a9fe9ddaSSatish Balay 160798a3b096SSatish Balay #undef __FUNCT__ 1608a9fe9ddaSSatish Balay #define __FUNCT__ "MatMatMultNumeric_SeqDense_SeqDense" 1609a9fe9ddaSSatish Balay PetscErrorCode MatMatMultNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C) 1610a9fe9ddaSSatish Balay { 1611a9fe9ddaSSatish Balay Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1612a9fe9ddaSSatish Balay Mat_SeqDense *b = (Mat_SeqDense*)B->data; 1613a9fe9ddaSSatish Balay Mat_SeqDense *c = (Mat_SeqDense*)C->data; 16140805154bSBarry Smith PetscBLASInt m,n,k; 1615a9fe9ddaSSatish Balay PetscScalar _DOne=1.0,_DZero=0.0; 1616a9fe9ddaSSatish Balay 1617a9fe9ddaSSatish Balay PetscFunctionBegin; 1618d0f46423SBarry Smith m = PetscBLASIntCast(A->rmap->n); 1619d0f46423SBarry Smith n = PetscBLASIntCast(B->cmap->n); 1620d0f46423SBarry Smith k = PetscBLASIntCast(A->cmap->n); 1621a9fe9ddaSSatish Balay BLASgemm_("N","N",&m,&n,&k,&_DOne,a->v,&a->lda,b->v,&b->lda,&_DZero,c->v,&c->lda); 1622a9fe9ddaSSatish Balay PetscFunctionReturn(0); 1623a9fe9ddaSSatish Balay } 1624a9fe9ddaSSatish Balay 1625a9fe9ddaSSatish Balay #undef __FUNCT__ 1626a9fe9ddaSSatish Balay #define __FUNCT__ "MatMatMultTranspose_SeqDense_SeqDense" 1627a9fe9ddaSSatish Balay PetscErrorCode MatMatMultTranspose_SeqDense_SeqDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 1628a9fe9ddaSSatish Balay { 1629a9fe9ddaSSatish Balay PetscErrorCode ierr; 1630a9fe9ddaSSatish Balay 1631a9fe9ddaSSatish Balay PetscFunctionBegin; 1632a9fe9ddaSSatish Balay if (scall == MAT_INITIAL_MATRIX){ 1633a9fe9ddaSSatish Balay ierr = MatMatMultTransposeSymbolic_SeqDense_SeqDense(A,B,fill,C);CHKERRQ(ierr); 1634a9fe9ddaSSatish Balay } 1635a9fe9ddaSSatish Balay ierr = MatMatMultTransposeNumeric_SeqDense_SeqDense(A,B,*C);CHKERRQ(ierr); 1636a9fe9ddaSSatish Balay PetscFunctionReturn(0); 1637a9fe9ddaSSatish Balay } 1638a9fe9ddaSSatish Balay 1639a9fe9ddaSSatish Balay #undef __FUNCT__ 1640a9fe9ddaSSatish Balay #define __FUNCT__ "MatMatMultTransposeSymbolic_SeqDense_SeqDense" 1641a9fe9ddaSSatish Balay PetscErrorCode MatMatMultTransposeSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat *C) 1642a9fe9ddaSSatish Balay { 1643ee16a9a1SHong Zhang PetscErrorCode ierr; 1644d0f46423SBarry Smith PetscInt m=A->cmap->n,n=B->cmap->n; 1645ee16a9a1SHong Zhang Mat Cmat; 1646a9fe9ddaSSatish Balay 1647ee16a9a1SHong Zhang PetscFunctionBegin; 1648d0f46423SBarry Smith if (A->rmap->n != B->rmap->n) SETERRQ2(PETSC_ERR_ARG_SIZ,"A->rmap->n %d != B->rmap->n %d\n",A->rmap->n,B->rmap->n); 1649ee16a9a1SHong Zhang ierr = MatCreate(PETSC_COMM_SELF,&Cmat);CHKERRQ(ierr); 1650ee16a9a1SHong Zhang ierr = MatSetSizes(Cmat,m,n,m,n);CHKERRQ(ierr); 1651ee16a9a1SHong Zhang ierr = MatSetType(Cmat,MATSEQDENSE);CHKERRQ(ierr); 1652ee16a9a1SHong Zhang ierr = MatSeqDenseSetPreallocation(Cmat,PETSC_NULL);CHKERRQ(ierr); 1653ee16a9a1SHong Zhang Cmat->assembled = PETSC_TRUE; 1654ee16a9a1SHong Zhang *C = Cmat; 1655ee16a9a1SHong Zhang PetscFunctionReturn(0); 1656ee16a9a1SHong Zhang } 1657a9fe9ddaSSatish Balay 1658a9fe9ddaSSatish Balay #undef __FUNCT__ 1659a9fe9ddaSSatish Balay #define __FUNCT__ "MatMatMultTransposeNumeric_SeqDense_SeqDense" 1660a9fe9ddaSSatish Balay PetscErrorCode MatMatMultTransposeNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C) 1661a9fe9ddaSSatish Balay { 1662a9fe9ddaSSatish Balay Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1663a9fe9ddaSSatish Balay Mat_SeqDense *b = (Mat_SeqDense*)B->data; 1664a9fe9ddaSSatish Balay Mat_SeqDense *c = (Mat_SeqDense*)C->data; 16650805154bSBarry Smith PetscBLASInt m,n,k; 1666a9fe9ddaSSatish Balay PetscScalar _DOne=1.0,_DZero=0.0; 1667a9fe9ddaSSatish Balay 1668a9fe9ddaSSatish Balay PetscFunctionBegin; 1669d0f46423SBarry Smith m = PetscBLASIntCast(A->cmap->n); 1670d0f46423SBarry Smith n = PetscBLASIntCast(B->cmap->n); 1671d0f46423SBarry Smith k = PetscBLASIntCast(A->rmap->n); 16722fbe02b9SBarry Smith /* 16732fbe02b9SBarry Smith Note the m and n arguments below are the number rows and columns of A', not A! 16742fbe02b9SBarry Smith */ 1675a9fe9ddaSSatish Balay BLASgemm_("T","N",&m,&n,&k,&_DOne,a->v,&a->lda,b->v,&b->lda,&_DZero,c->v,&c->lda); 1676a9fe9ddaSSatish Balay PetscFunctionReturn(0); 1677a9fe9ddaSSatish Balay } 1678985db425SBarry Smith 1679985db425SBarry Smith #undef __FUNCT__ 1680985db425SBarry Smith #define __FUNCT__ "MatGetRowMax_SeqDense" 1681985db425SBarry Smith PetscErrorCode MatGetRowMax_SeqDense(Mat A,Vec v,PetscInt idx[]) 1682985db425SBarry Smith { 1683985db425SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1684985db425SBarry Smith PetscErrorCode ierr; 1685d0f46423SBarry Smith PetscInt i,j,m = A->rmap->n,n = A->cmap->n,p; 1686985db425SBarry Smith PetscScalar *x; 1687985db425SBarry Smith MatScalar *aa = a->v; 1688985db425SBarry Smith 1689985db425SBarry Smith PetscFunctionBegin; 1690985db425SBarry Smith if (A->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 1691985db425SBarry Smith 1692985db425SBarry Smith ierr = VecSet(v,0.0);CHKERRQ(ierr); 1693985db425SBarry Smith ierr = VecGetArray(v,&x);CHKERRQ(ierr); 1694985db425SBarry Smith ierr = VecGetLocalSize(v,&p);CHKERRQ(ierr); 1695d0f46423SBarry Smith if (p != A->rmap->n) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector"); 1696985db425SBarry Smith for (i=0; i<m; i++) { 1697985db425SBarry Smith x[i] = aa[i]; if (idx) idx[i] = 0; 1698985db425SBarry Smith for (j=1; j<n; j++){ 1699985db425SBarry Smith if (PetscRealPart(x[i]) < PetscRealPart(aa[i+m*j])) {x[i] = aa[i + m*j]; if (idx) idx[i] = j;} 1700985db425SBarry Smith } 1701985db425SBarry Smith } 1702985db425SBarry Smith ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 1703985db425SBarry Smith PetscFunctionReturn(0); 1704985db425SBarry Smith } 1705985db425SBarry Smith 1706985db425SBarry Smith #undef __FUNCT__ 1707985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_SeqDense" 1708985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_SeqDense(Mat A,Vec v,PetscInt idx[]) 1709985db425SBarry Smith { 1710985db425SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1711985db425SBarry Smith PetscErrorCode ierr; 1712d0f46423SBarry Smith PetscInt i,j,m = A->rmap->n,n = A->cmap->n,p; 1713985db425SBarry Smith PetscScalar *x; 1714985db425SBarry Smith PetscReal atmp; 1715985db425SBarry Smith MatScalar *aa = a->v; 1716985db425SBarry Smith 1717985db425SBarry Smith PetscFunctionBegin; 1718985db425SBarry Smith if (A->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 1719985db425SBarry Smith 1720985db425SBarry Smith ierr = VecSet(v,0.0);CHKERRQ(ierr); 1721985db425SBarry Smith ierr = VecGetArray(v,&x);CHKERRQ(ierr); 1722985db425SBarry Smith ierr = VecGetLocalSize(v,&p);CHKERRQ(ierr); 1723d0f46423SBarry Smith if (p != A->rmap->n) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector"); 1724985db425SBarry Smith for (i=0; i<m; i++) { 17259189402eSHong Zhang x[i] = PetscAbsScalar(aa[i]); 1726985db425SBarry Smith for (j=1; j<n; j++){ 1727985db425SBarry Smith atmp = PetscAbsScalar(aa[i+m*j]); 1728985db425SBarry Smith if (PetscAbsScalar(x[i]) < atmp) {x[i] = atmp; if (idx) idx[i] = j;} 1729985db425SBarry Smith } 1730985db425SBarry Smith } 1731985db425SBarry Smith ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 1732985db425SBarry Smith PetscFunctionReturn(0); 1733985db425SBarry Smith } 1734985db425SBarry Smith 1735985db425SBarry Smith #undef __FUNCT__ 1736985db425SBarry Smith #define __FUNCT__ "MatGetRowMin_SeqDense" 1737985db425SBarry Smith PetscErrorCode MatGetRowMin_SeqDense(Mat A,Vec v,PetscInt idx[]) 1738985db425SBarry Smith { 1739985db425SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 1740985db425SBarry Smith PetscErrorCode ierr; 1741d0f46423SBarry Smith PetscInt i,j,m = A->rmap->n,n = A->cmap->n,p; 1742985db425SBarry Smith PetscScalar *x; 1743985db425SBarry Smith MatScalar *aa = a->v; 1744985db425SBarry Smith 1745985db425SBarry Smith PetscFunctionBegin; 1746985db425SBarry Smith if (A->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 1747985db425SBarry Smith 1748985db425SBarry Smith ierr = VecSet(v,0.0);CHKERRQ(ierr); 1749985db425SBarry Smith ierr = VecGetArray(v,&x);CHKERRQ(ierr); 1750985db425SBarry Smith ierr = VecGetLocalSize(v,&p);CHKERRQ(ierr); 1751d0f46423SBarry Smith if (p != A->rmap->n) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector"); 1752985db425SBarry Smith for (i=0; i<m; i++) { 1753985db425SBarry Smith x[i] = aa[i]; if (idx) idx[i] = 0; 1754985db425SBarry Smith for (j=1; j<n; j++){ 1755985db425SBarry Smith if (PetscRealPart(x[i]) > PetscRealPart(aa[i+m*j])) {x[i] = aa[i + m*j]; if (idx) idx[i] = j;} 1756985db425SBarry Smith } 1757985db425SBarry Smith } 1758985db425SBarry Smith ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 1759985db425SBarry Smith PetscFunctionReturn(0); 1760985db425SBarry Smith } 1761985db425SBarry Smith 17628d0534beSBarry Smith #undef __FUNCT__ 17638d0534beSBarry Smith #define __FUNCT__ "MatGetColumnVector_SeqDense" 17648d0534beSBarry Smith PetscErrorCode MatGetColumnVector_SeqDense(Mat A,Vec v,PetscInt col) 17658d0534beSBarry Smith { 17668d0534beSBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)A->data; 17678d0534beSBarry Smith PetscErrorCode ierr; 17688d0534beSBarry Smith PetscScalar *x; 17698d0534beSBarry Smith 17708d0534beSBarry Smith PetscFunctionBegin; 17718d0534beSBarry Smith if (A->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 17728d0534beSBarry Smith 17738d0534beSBarry Smith ierr = VecGetArray(v,&x);CHKERRQ(ierr); 1774d0f46423SBarry Smith ierr = PetscMemcpy(x,a->v+col*a->lda,A->rmap->n*sizeof(PetscScalar));CHKERRQ(ierr); 17758d0534beSBarry Smith ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 17768d0534beSBarry Smith PetscFunctionReturn(0); 17778d0534beSBarry Smith } 17788d0534beSBarry Smith 1779289bc588SBarry Smith /* -------------------------------------------------------------------*/ 1780a5ae1ecdSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_SeqDense, 1781905e6a2fSBarry Smith MatGetRow_SeqDense, 1782905e6a2fSBarry Smith MatRestoreRow_SeqDense, 1783905e6a2fSBarry Smith MatMult_SeqDense, 178497304618SKris Buschelman /* 4*/ MatMultAdd_SeqDense, 17857c922b88SBarry Smith MatMultTranspose_SeqDense, 17867c922b88SBarry Smith MatMultTransposeAdd_SeqDense, 1787db4efbfdSBarry Smith 0, 1788db4efbfdSBarry Smith 0, 1789db4efbfdSBarry Smith 0, 1790db4efbfdSBarry Smith /*10*/ 0, 1791905e6a2fSBarry Smith MatLUFactor_SeqDense, 1792905e6a2fSBarry Smith MatCholeskyFactor_SeqDense, 179341f059aeSBarry Smith MatSOR_SeqDense, 1794ec8511deSBarry Smith MatTranspose_SeqDense, 179597304618SKris Buschelman /*15*/ MatGetInfo_SeqDense, 1796905e6a2fSBarry Smith MatEqual_SeqDense, 1797905e6a2fSBarry Smith MatGetDiagonal_SeqDense, 1798905e6a2fSBarry Smith MatDiagonalScale_SeqDense, 1799905e6a2fSBarry Smith MatNorm_SeqDense, 1800c0aa2d19SHong Zhang /*20*/ MatAssemblyBegin_SeqDense, 1801c0aa2d19SHong Zhang MatAssemblyEnd_SeqDense, 1802905e6a2fSBarry Smith MatSetOption_SeqDense, 1803905e6a2fSBarry Smith MatZeroEntries_SeqDense, 1804d519adbfSMatthew Knepley /*24*/ MatZeroRows_SeqDense, 1805db4efbfdSBarry Smith 0, 1806db4efbfdSBarry Smith 0, 1807db4efbfdSBarry Smith 0, 1808db4efbfdSBarry Smith 0, 1809d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_SeqDense, 1810273d9f13SBarry Smith 0, 1811905e6a2fSBarry Smith 0, 1812905e6a2fSBarry Smith MatGetArray_SeqDense, 1813905e6a2fSBarry Smith MatRestoreArray_SeqDense, 1814d519adbfSMatthew Knepley /*34*/ MatDuplicate_SeqDense, 1815a5ae1ecdSBarry Smith 0, 1816a5ae1ecdSBarry Smith 0, 1817a5ae1ecdSBarry Smith 0, 1818a5ae1ecdSBarry Smith 0, 1819d519adbfSMatthew Knepley /*39*/ MatAXPY_SeqDense, 1820a5ae1ecdSBarry Smith MatGetSubMatrices_SeqDense, 1821a5ae1ecdSBarry Smith 0, 18224b0e389bSBarry Smith MatGetValues_SeqDense, 1823a5ae1ecdSBarry Smith MatCopy_SeqDense, 1824d519adbfSMatthew Knepley /*44*/ MatGetRowMax_SeqDense, 1825a5ae1ecdSBarry Smith MatScale_SeqDense, 1826a5ae1ecdSBarry Smith 0, 1827a5ae1ecdSBarry Smith 0, 1828a5ae1ecdSBarry Smith 0, 1829d519adbfSMatthew Knepley /*49*/ 0, 1830a5ae1ecdSBarry Smith 0, 1831a5ae1ecdSBarry Smith 0, 1832a5ae1ecdSBarry Smith 0, 1833a5ae1ecdSBarry Smith 0, 1834d519adbfSMatthew Knepley /*54*/ 0, 1835a5ae1ecdSBarry Smith 0, 1836a5ae1ecdSBarry Smith 0, 1837a5ae1ecdSBarry Smith 0, 1838a5ae1ecdSBarry Smith 0, 1839d519adbfSMatthew Knepley /*59*/ 0, 1840e03a110bSBarry Smith MatDestroy_SeqDense, 1841e03a110bSBarry Smith MatView_SeqDense, 1842357abbc8SBarry Smith 0, 184397304618SKris Buschelman 0, 1844d519adbfSMatthew Knepley /*64*/ 0, 184597304618SKris Buschelman 0, 184697304618SKris Buschelman 0, 184797304618SKris Buschelman 0, 184897304618SKris Buschelman 0, 1849d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_SeqDense, 185097304618SKris Buschelman 0, 185197304618SKris Buschelman 0, 185297304618SKris Buschelman 0, 185397304618SKris Buschelman 0, 1854d519adbfSMatthew Knepley /*74*/ 0, 185597304618SKris Buschelman 0, 185697304618SKris Buschelman 0, 185797304618SKris Buschelman 0, 185897304618SKris Buschelman 0, 1859d519adbfSMatthew Knepley /*79*/ 0, 186097304618SKris Buschelman 0, 186197304618SKris Buschelman 0, 186297304618SKris Buschelman 0, 1863d519adbfSMatthew Knepley /*83*/ MatLoad_SeqDense, 1864865e5f61SKris Buschelman 0, 18651cbb95d3SBarry Smith MatIsHermitian_SeqDense, 1866865e5f61SKris Buschelman 0, 1867865e5f61SKris Buschelman 0, 1868865e5f61SKris Buschelman 0, 1869d519adbfSMatthew Knepley /*89*/ MatMatMult_SeqDense_SeqDense, 1870a9fe9ddaSSatish Balay MatMatMultSymbolic_SeqDense_SeqDense, 1871a9fe9ddaSSatish Balay MatMatMultNumeric_SeqDense_SeqDense, 1872865e5f61SKris Buschelman 0, 1873865e5f61SKris Buschelman 0, 1874d519adbfSMatthew Knepley /*94*/ 0, 1875a9fe9ddaSSatish Balay MatMatMultTranspose_SeqDense_SeqDense, 1876a9fe9ddaSSatish Balay MatMatMultTransposeSymbolic_SeqDense_SeqDense, 1877a9fe9ddaSSatish Balay MatMatMultTransposeNumeric_SeqDense_SeqDense, 1878284134d9SBarry Smith 0, 1879d519adbfSMatthew Knepley /*99*/ 0, 1880284134d9SBarry Smith 0, 1881284134d9SBarry Smith 0, 1882*ba337c44SJed Brown MatConjugate_SeqDense, 1883985db425SBarry Smith MatSetSizes_SeqDense, 1884*ba337c44SJed Brown /*104*/0, 1885*ba337c44SJed Brown MatRealPart_SeqDense, 1886*ba337c44SJed Brown MatImaginaryPart_SeqDense, 1887985db425SBarry Smith 0, 1888985db425SBarry Smith 0, 1889d519adbfSMatthew Knepley /*109*/0, 1890985db425SBarry Smith 0, 18918d0534beSBarry Smith MatGetRowMin_SeqDense, 18928d0534beSBarry Smith MatGetColumnVector_SeqDense 1893985db425SBarry Smith }; 189490ace30eSBarry Smith 18954a2ae208SSatish Balay #undef __FUNCT__ 18964a2ae208SSatish Balay #define __FUNCT__ "MatCreateSeqDense" 18974b828684SBarry Smith /*@C 1898fafbff53SBarry Smith MatCreateSeqDense - Creates a sequential dense matrix that 1899d65003e9SLois Curfman McInnes is stored in column major order (the usual Fortran 77 manner). Many 1900d65003e9SLois Curfman McInnes of the matrix operations use the BLAS and LAPACK routines. 1901289bc588SBarry Smith 1902db81eaa0SLois Curfman McInnes Collective on MPI_Comm 1903db81eaa0SLois Curfman McInnes 190420563c6bSBarry Smith Input Parameters: 1905db81eaa0SLois Curfman McInnes + comm - MPI communicator, set to PETSC_COMM_SELF 19060c775827SLois Curfman McInnes . m - number of rows 190718f449edSLois Curfman McInnes . n - number of columns 1908c0235b3cSMatthew Knepley - data - optional location of matrix data in column major order. Set data=PETSC_NULL for PETSc 1909dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 191020563c6bSBarry Smith 191120563c6bSBarry Smith Output Parameter: 191244cd7ae7SLois Curfman McInnes . A - the matrix 191320563c6bSBarry Smith 1914b259b22eSLois Curfman McInnes Notes: 191518f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 191618f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 1917b4fd4287SBarry Smith set data=PETSC_NULL. 191818f449edSLois Curfman McInnes 1919027ccd11SLois Curfman McInnes Level: intermediate 1920027ccd11SLois Curfman McInnes 1921dbd7a890SLois Curfman McInnes .keywords: dense, matrix, LAPACK, BLAS 1922d65003e9SLois Curfman McInnes 1923db81eaa0SLois Curfman McInnes .seealso: MatCreate(), MatCreateMPIDense(), MatSetValues() 192420563c6bSBarry Smith @*/ 1925be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscScalar *data,Mat *A) 1926289bc588SBarry Smith { 1927dfbe8321SBarry Smith PetscErrorCode ierr; 19283b2fbd54SBarry Smith 19293a40ed3dSBarry Smith PetscFunctionBegin; 1930f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 1931f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr); 1932273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 1933273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 1934273d9f13SBarry Smith PetscFunctionReturn(0); 1935273d9f13SBarry Smith } 1936273d9f13SBarry Smith 19374a2ae208SSatish Balay #undef __FUNCT__ 1938afc30d2aSLisandro Dalcin #define __FUNCT__ "MatSeqDenseSetPreallocation" 1939273d9f13SBarry Smith /*@C 1940273d9f13SBarry Smith MatSeqDenseSetPreallocation - Sets the array used for storing the matrix elements 1941273d9f13SBarry Smith 1942273d9f13SBarry Smith Collective on MPI_Comm 1943273d9f13SBarry Smith 1944273d9f13SBarry Smith Input Parameters: 1945273d9f13SBarry Smith + A - the matrix 1946273d9f13SBarry Smith - data - the array (or PETSC_NULL) 1947273d9f13SBarry Smith 1948273d9f13SBarry Smith Notes: 1949273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1950273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 1951284134d9SBarry Smith need not call this routine. 1952273d9f13SBarry Smith 1953273d9f13SBarry Smith Level: intermediate 1954273d9f13SBarry Smith 1955273d9f13SBarry Smith .keywords: dense, matrix, LAPACK, BLAS 1956273d9f13SBarry Smith 1957867c911aSBarry Smith .seealso: MatCreate(), MatCreateMPIDense(), MatSetValues(), MatSeqDenseSetLDA() 1958867c911aSBarry Smith 1959273d9f13SBarry Smith @*/ 1960be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqDenseSetPreallocation(Mat B,PetscScalar data[]) 1961273d9f13SBarry Smith { 1962dfbe8321SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscScalar[]); 1963a23d5eceSKris Buschelman 1964a23d5eceSKris Buschelman PetscFunctionBegin; 1965a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatSeqDenseSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1966a23d5eceSKris Buschelman if (f) { 1967a23d5eceSKris Buschelman ierr = (*f)(B,data);CHKERRQ(ierr); 1968a23d5eceSKris Buschelman } 1969a23d5eceSKris Buschelman PetscFunctionReturn(0); 1970a23d5eceSKris Buschelman } 1971a23d5eceSKris Buschelman 1972a23d5eceSKris Buschelman EXTERN_C_BEGIN 1973a23d5eceSKris Buschelman #undef __FUNCT__ 1974afc30d2aSLisandro Dalcin #define __FUNCT__ "MatSeqDenseSetPreallocation_SeqDense" 1975be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqDenseSetPreallocation_SeqDense(Mat B,PetscScalar *data) 1976a23d5eceSKris Buschelman { 1977273d9f13SBarry Smith Mat_SeqDense *b; 1978dfbe8321SBarry Smith PetscErrorCode ierr; 1979273d9f13SBarry Smith 1980273d9f13SBarry Smith PetscFunctionBegin; 1981273d9f13SBarry Smith B->preallocated = PETSC_TRUE; 1982273d9f13SBarry Smith b = (Mat_SeqDense*)B->data; 1983d0f46423SBarry Smith if (b->lda <= 0) b->lda = B->rmap->n; 19849e8f95c4SLisandro Dalcin if (!data) { /* petsc-allocated storage */ 19859e8f95c4SLisandro Dalcin if (!b->user_alloc) { ierr = PetscFree(b->v);CHKERRQ(ierr); } 19865afd5e0cSBarry Smith ierr = PetscMalloc(b->lda*b->Nmax*sizeof(PetscScalar),&b->v);CHKERRQ(ierr); 1987284134d9SBarry Smith ierr = PetscMemzero(b->v,b->lda*b->Nmax*sizeof(PetscScalar));CHKERRQ(ierr); 1988284134d9SBarry Smith ierr = PetscLogObjectMemory(B,b->lda*b->Nmax*sizeof(PetscScalar));CHKERRQ(ierr); 19899e8f95c4SLisandro Dalcin b->user_alloc = PETSC_FALSE; 1990273d9f13SBarry Smith } else { /* user-allocated storage */ 19919e8f95c4SLisandro Dalcin if (!b->user_alloc) { ierr = PetscFree(b->v);CHKERRQ(ierr); } 1992273d9f13SBarry Smith b->v = data; 1993273d9f13SBarry Smith b->user_alloc = PETSC_TRUE; 1994273d9f13SBarry Smith } 19950450473dSBarry Smith B->assembled = PETSC_TRUE; 1996273d9f13SBarry Smith PetscFunctionReturn(0); 1997273d9f13SBarry Smith } 1998a23d5eceSKris Buschelman EXTERN_C_END 1999273d9f13SBarry Smith 20001b807ce4Svictorle #undef __FUNCT__ 20011b807ce4Svictorle #define __FUNCT__ "MatSeqDenseSetLDA" 20021b807ce4Svictorle /*@C 20031b807ce4Svictorle MatSeqDenseSetLDA - Declare the leading dimension of the user-provided array 20041b807ce4Svictorle 20051b807ce4Svictorle Input parameter: 20061b807ce4Svictorle + A - the matrix 20071b807ce4Svictorle - lda - the leading dimension 20081b807ce4Svictorle 20091b807ce4Svictorle Notes: 2010867c911aSBarry Smith This routine is to be used in conjunction with MatSeqDenseSetPreallocation(); 20111b807ce4Svictorle it asserts that the preallocation has a leading dimension (the LDA parameter 20121b807ce4Svictorle of Blas and Lapack fame) larger than M, the first dimension of the matrix. 20131b807ce4Svictorle 20141b807ce4Svictorle Level: intermediate 20151b807ce4Svictorle 20161b807ce4Svictorle .keywords: dense, matrix, LAPACK, BLAS 20171b807ce4Svictorle 2018284134d9SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSeqDenseSetPreallocation(), MatSetMaximumSize() 2019867c911aSBarry Smith 20201b807ce4Svictorle @*/ 2021be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqDenseSetLDA(Mat B,PetscInt lda) 20221b807ce4Svictorle { 20231b807ce4Svictorle Mat_SeqDense *b = (Mat_SeqDense*)B->data; 202421a2c019SBarry Smith 20251b807ce4Svictorle PetscFunctionBegin; 2026d0f46423SBarry Smith if (lda < B->rmap->n) SETERRQ2(PETSC_ERR_ARG_SIZ,"LDA %D must be at least matrix dimension %D",lda,B->rmap->n); 20271b807ce4Svictorle b->lda = lda; 202821a2c019SBarry Smith b->changelda = PETSC_FALSE; 202921a2c019SBarry Smith b->Mmax = PetscMax(b->Mmax,lda); 20301b807ce4Svictorle PetscFunctionReturn(0); 20311b807ce4Svictorle } 20321b807ce4Svictorle 20330bad9183SKris Buschelman /*MC 2034fafad747SKris Buschelman MATSEQDENSE - MATSEQDENSE = "seqdense" - A matrix type to be used for sequential dense matrices. 20350bad9183SKris Buschelman 20360bad9183SKris Buschelman Options Database Keys: 20370bad9183SKris Buschelman . -mat_type seqdense - sets the matrix type to "seqdense" during a call to MatSetFromOptions() 20380bad9183SKris Buschelman 20390bad9183SKris Buschelman Level: beginner 20400bad9183SKris Buschelman 204189665df3SBarry Smith .seealso: MatCreateSeqDense() 204289665df3SBarry Smith 20430bad9183SKris Buschelman M*/ 20440bad9183SKris Buschelman 2045273d9f13SBarry Smith EXTERN_C_BEGIN 20464a2ae208SSatish Balay #undef __FUNCT__ 20474a2ae208SSatish Balay #define __FUNCT__ "MatCreate_SeqDense" 2048be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SeqDense(Mat B) 2049273d9f13SBarry Smith { 2050273d9f13SBarry Smith Mat_SeqDense *b; 2051dfbe8321SBarry Smith PetscErrorCode ierr; 20527c334f02SBarry Smith PetscMPIInt size; 2053273d9f13SBarry Smith 2054273d9f13SBarry Smith PetscFunctionBegin; 20557adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&size);CHKERRQ(ierr); 205629bbc08cSBarry Smith if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"Comm must be of size 1"); 205755659b69SBarry Smith 205826283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,1);CHKERRQ(ierr); 205926283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,1);CHKERRQ(ierr); 206026283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 206126283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2062273d9f13SBarry Smith 206338f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_SeqDense,&b);CHKERRQ(ierr); 2064549d3d68SSatish Balay ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 206590f02eecSBarry Smith B->mapping = 0; 206644cd7ae7SLois Curfman McInnes B->data = (void*)b; 206718f449edSLois Curfman McInnes 2068a5ae1ecdSBarry Smith 206944cd7ae7SLois Curfman McInnes b->pivots = 0; 2070273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2071273d9f13SBarry Smith b->v = 0; 2072d0f46423SBarry Smith b->lda = B->rmap->n; 207321a2c019SBarry Smith b->changelda = PETSC_FALSE; 2074d0f46423SBarry Smith b->Mmax = B->rmap->n; 2075d0f46423SBarry Smith b->Nmax = B->cmap->n; 20764e220ebcSLois Curfman McInnes 2077b24902e0SBarry Smith 2078ec1065edSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_petsc_C", 2079b24902e0SBarry Smith "MatGetFactor_seqdense_petsc", 2080b24902e0SBarry Smith MatGetFactor_seqdense_petsc);CHKERRQ(ierr); 2081a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqDenseSetPreallocation_C", 2082a23d5eceSKris Buschelman "MatSeqDenseSetPreallocation_SeqDense", 2083a23d5eceSKris Buschelman MatSeqDenseSetPreallocation_SeqDense);CHKERRQ(ierr); 20844ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMatMult_seqaij_seqdense_C", 20854ae313f4SHong Zhang "MatMatMult_SeqAIJ_SeqDense", 20864ae313f4SHong Zhang MatMatMult_SeqAIJ_SeqDense);CHKERRQ(ierr); 20874ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMatMultSymbolic_seqaij_seqdense_C", 20884ae313f4SHong Zhang "MatMatMultSymbolic_SeqAIJ_SeqDense", 20894ae313f4SHong Zhang MatMatMultSymbolic_SeqAIJ_SeqDense);CHKERRQ(ierr); 20904ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMatMultNumeric_seqaij_seqdense_C", 20914ae313f4SHong Zhang "MatMatMultNumeric_SeqAIJ_SeqDense", 20924ae313f4SHong Zhang MatMatMultNumeric_SeqAIJ_SeqDense);CHKERRQ(ierr); 209317667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQDENSE);CHKERRQ(ierr); 20943a40ed3dSBarry Smith PetscFunctionReturn(0); 2095289bc588SBarry Smith } 2096c0aa2d19SHong Zhang 2097c0aa2d19SHong Zhang 2098273d9f13SBarry Smith EXTERN_C_END 2099