xref: /petsc/src/mat/impls/dense/seq/dense.c (revision bcd8d3a4094add42f5e7e85f28d3f38e53ba6344)
1be1d678aSKris Buschelman 
267e560aaSBarry Smith /*
367e560aaSBarry Smith      Defines the basic matrix operations for sequential dense.
467e560aaSBarry Smith */
5289bc588SBarry Smith 
6dec5eb66SMatthew G Knepley #include <../src/mat/impls/dense/seq/dense.h> /*I "petscmat.h" I*/
7c6db04a5SJed Brown #include <petscblaslapack.h>
8289bc588SBarry Smith 
96a63e612SBarry Smith #include <../src/mat/impls/aij/seq/aij.h>
10b2573a8aSBarry Smith 
11ca15aa20SStefano Zampini PetscErrorCode MatSeqDenseSymmetrize_Private(Mat A, PetscBool hermitian)
128c178816SStefano Zampini {
138c178816SStefano Zampini   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
148c178816SStefano Zampini   PetscInt       j, k, n = A->rmap->n;
15ca15aa20SStefano Zampini   PetscScalar    *v;
168c178816SStefano Zampini 
178c178816SStefano Zampini   PetscFunctionBegin;
182c71b3e2SJacob Faibussowitsch   PetscCheckFalse(A->rmap->n != A->cmap->n,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Cannot symmetrize a rectangular matrix");
199566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(A,&v));
208c178816SStefano Zampini   if (!hermitian) {
218c178816SStefano Zampini     for (k=0;k<n;k++) {
228c178816SStefano Zampini       for (j=k;j<n;j++) {
23ca15aa20SStefano Zampini         v[j*mat->lda + k] = v[k*mat->lda + j];
248c178816SStefano Zampini       }
258c178816SStefano Zampini     }
268c178816SStefano Zampini   } else {
278c178816SStefano Zampini     for (k=0;k<n;k++) {
288c178816SStefano Zampini       for (j=k;j<n;j++) {
29ca15aa20SStefano Zampini         v[j*mat->lda + k] = PetscConj(v[k*mat->lda + j]);
308c178816SStefano Zampini       }
318c178816SStefano Zampini     }
328c178816SStefano Zampini   }
339566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(A,&v));
348c178816SStefano Zampini   PetscFunctionReturn(0);
358c178816SStefano Zampini }
368c178816SStefano Zampini 
3705709791SSatish Balay PETSC_EXTERN PetscErrorCode MatSeqDenseInvertFactors_Private(Mat A)
388c178816SStefano Zampini {
398c178816SStefano Zampini   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
408c178816SStefano Zampini   PetscBLASInt   info,n;
418c178816SStefano Zampini 
428c178816SStefano Zampini   PetscFunctionBegin;
438c178816SStefano Zampini   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
449566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(A->cmap->n,&n));
458c178816SStefano Zampini   if (A->factortype == MAT_FACTOR_LU) {
4628b400f6SJacob Faibussowitsch     PetscCheck(mat->pivots,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Pivots not present");
478c178816SStefano Zampini     if (!mat->fwork) {
488c178816SStefano Zampini       mat->lfwork = n;
499566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->lfwork,&mat->fwork));
509566063dSJacob Faibussowitsch       PetscCall(PetscLogObjectMemory((PetscObject)A,mat->lfwork*sizeof(PetscBLASInt)));
518c178816SStefano Zampini     }
529566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
538c178816SStefano Zampini     PetscStackCallBLAS("LAPACKgetri",LAPACKgetri_(&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&mat->lfwork,&info));
549566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPop());
559566063dSJacob Faibussowitsch     PetscCall(PetscLogFlops((1.0*A->cmap->n*A->cmap->n*A->cmap->n)/3.0));
568c178816SStefano Zampini   } else if (A->factortype == MAT_FACTOR_CHOLESKY) {
578c178816SStefano Zampini     if (A->spd) {
589566063dSJacob Faibussowitsch       PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
598c178816SStefano Zampini       PetscStackCallBLAS("LAPACKpotri",LAPACKpotri_("L",&n,mat->v,&mat->lda,&info));
609566063dSJacob Faibussowitsch       PetscCall(PetscFPTrapPop());
619566063dSJacob Faibussowitsch       PetscCall(MatSeqDenseSymmetrize_Private(A,PETSC_TRUE));
628c178816SStefano Zampini #if defined(PETSC_USE_COMPLEX)
638c178816SStefano Zampini     } else if (A->hermitian) {
6428b400f6SJacob Faibussowitsch       PetscCheck(mat->pivots,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Pivots not present");
6528b400f6SJacob Faibussowitsch       PetscCheck(mat->fwork,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Fwork not present");
669566063dSJacob Faibussowitsch       PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
678c178816SStefano Zampini       PetscStackCallBLAS("LAPACKhetri",LAPACKhetri_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&info));
689566063dSJacob Faibussowitsch       PetscCall(PetscFPTrapPop());
699566063dSJacob Faibussowitsch       PetscCall(MatSeqDenseSymmetrize_Private(A,PETSC_TRUE));
708c178816SStefano Zampini #endif
718c178816SStefano Zampini     } else { /* symmetric case */
7228b400f6SJacob Faibussowitsch       PetscCheck(mat->pivots,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Pivots not present");
7328b400f6SJacob Faibussowitsch       PetscCheck(mat->fwork,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Fwork not present");
749566063dSJacob Faibussowitsch       PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
758c178816SStefano Zampini       PetscStackCallBLAS("LAPACKsytri",LAPACKsytri_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&info));
769566063dSJacob Faibussowitsch       PetscCall(PetscFPTrapPop());
779566063dSJacob Faibussowitsch       PetscCall(MatSeqDenseSymmetrize_Private(A,PETSC_FALSE));
788c178816SStefano Zampini     }
7928b400f6SJacob Faibussowitsch     PetscCheck(!info,PETSC_COMM_SELF,PETSC_ERR_MAT_CH_ZRPVT,"Bad Inversion: zero pivot in row %" PetscInt_FMT,(PetscInt)info-1);
809566063dSJacob Faibussowitsch     PetscCall(PetscLogFlops((1.0*A->cmap->n*A->cmap->n*A->cmap->n)/3.0));
818c178816SStefano Zampini   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Matrix must be factored to solve");
828c178816SStefano Zampini 
838c178816SStefano Zampini   A->ops->solve             = NULL;
848c178816SStefano Zampini   A->ops->matsolve          = NULL;
858c178816SStefano Zampini   A->ops->solvetranspose    = NULL;
868c178816SStefano Zampini   A->ops->matsolvetranspose = NULL;
878c178816SStefano Zampini   A->ops->solveadd          = NULL;
888c178816SStefano Zampini   A->ops->solvetransposeadd = NULL;
898c178816SStefano Zampini   A->factortype             = MAT_FACTOR_NONE;
909566063dSJacob Faibussowitsch   PetscCall(PetscFree(A->solvertype));
918c178816SStefano Zampini   PetscFunctionReturn(0);
928c178816SStefano Zampini }
938c178816SStefano Zampini 
943f49a652SStefano Zampini PetscErrorCode MatZeroRowsColumns_SeqDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
953f49a652SStefano Zampini {
963f49a652SStefano Zampini   Mat_SeqDense      *l = (Mat_SeqDense*)A->data;
973f49a652SStefano Zampini   PetscInt          m  = l->lda, n = A->cmap->n,r = A->rmap->n, i,j;
98ca15aa20SStefano Zampini   PetscScalar       *slot,*bb,*v;
993f49a652SStefano Zampini   const PetscScalar *xx;
1003f49a652SStefano Zampini 
1013f49a652SStefano Zampini   PetscFunctionBegin;
10276bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
1033f49a652SStefano Zampini     for (i=0; i<N; i++) {
1042c71b3e2SJacob Faibussowitsch       PetscCheckFalse(rows[i] < 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row requested to be zeroed");
1052c71b3e2SJacob Faibussowitsch       PetscCheckFalse(rows[i] >= A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %" PetscInt_FMT " requested to be zeroed greater than or equal number of rows %" PetscInt_FMT,rows[i],A->rmap->n);
1062c71b3e2SJacob Faibussowitsch       PetscCheckFalse(rows[i] >= A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Col %" PetscInt_FMT " requested to be zeroed greater than or equal number of cols %" PetscInt_FMT,rows[i],A->cmap->n);
1073f49a652SStefano Zampini     }
10876bd3646SJed Brown   }
109ca15aa20SStefano Zampini   if (!N) PetscFunctionReturn(0);
1103f49a652SStefano Zampini 
1113f49a652SStefano Zampini   /* fix right hand side if needed */
1123f49a652SStefano Zampini   if (x && b) {
1136c4d906cSStefano Zampini     Vec xt;
1146c4d906cSStefano Zampini 
1152c71b3e2SJacob Faibussowitsch     PetscCheckFalse(A->rmap->n != A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only coded for square matrices");
1169566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(x,&xt));
1179566063dSJacob Faibussowitsch     PetscCall(VecCopy(x,xt));
1189566063dSJacob Faibussowitsch     PetscCall(VecScale(xt,-1.0));
1199566063dSJacob Faibussowitsch     PetscCall(MatMultAdd(A,xt,b,b));
1209566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&xt));
1219566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x,&xx));
1229566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b,&bb));
1233f49a652SStefano Zampini     for (i=0; i<N; i++) bb[rows[i]] = diag*xx[rows[i]];
1249566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x,&xx));
1259566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b,&bb));
1263f49a652SStefano Zampini   }
1273f49a652SStefano Zampini 
1289566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(A,&v));
1293f49a652SStefano Zampini   for (i=0; i<N; i++) {
130ca15aa20SStefano Zampini     slot = v + rows[i]*m;
1319566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(slot,r));
1323f49a652SStefano Zampini   }
1333f49a652SStefano Zampini   for (i=0; i<N; i++) {
134ca15aa20SStefano Zampini     slot = v + rows[i];
1353f49a652SStefano Zampini     for (j=0; j<n; j++) { *slot = 0.0; slot += m;}
1363f49a652SStefano Zampini   }
1373f49a652SStefano Zampini   if (diag != 0.0) {
1382c71b3e2SJacob Faibussowitsch     PetscCheckFalse(A->rmap->n != A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only coded for square matrices");
1393f49a652SStefano Zampini     for (i=0; i<N; i++) {
140ca15aa20SStefano Zampini       slot  = v + (m+1)*rows[i];
1413f49a652SStefano Zampini       *slot = diag;
1423f49a652SStefano Zampini     }
1433f49a652SStefano Zampini   }
1449566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(A,&v));
1453f49a652SStefano Zampini   PetscFunctionReturn(0);
1463f49a652SStefano Zampini }
1473f49a652SStefano Zampini 
148abc3b08eSStefano Zampini PetscErrorCode MatPtAPNumeric_SeqDense_SeqDense(Mat A,Mat P,Mat C)
149abc3b08eSStefano Zampini {
150abc3b08eSStefano Zampini   Mat_SeqDense   *c = (Mat_SeqDense*)(C->data);
151abc3b08eSStefano Zampini 
152abc3b08eSStefano Zampini   PetscFunctionBegin;
153ca15aa20SStefano Zampini   if (c->ptapwork) {
1549566063dSJacob Faibussowitsch     PetscCall((*C->ops->matmultnumeric)(A,P,c->ptapwork));
1559566063dSJacob Faibussowitsch     PetscCall((*C->ops->transposematmultnumeric)(P,c->ptapwork,C));
1564222ddf1SHong Zhang   } else SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_SUP,"Must call MatPtAPSymbolic_SeqDense_SeqDense() first");
157abc3b08eSStefano Zampini   PetscFunctionReturn(0);
158abc3b08eSStefano Zampini }
159abc3b08eSStefano Zampini 
1604222ddf1SHong Zhang PetscErrorCode MatPtAPSymbolic_SeqDense_SeqDense(Mat A,Mat P,PetscReal fill,Mat C)
161abc3b08eSStefano Zampini {
162abc3b08eSStefano Zampini   Mat_SeqDense   *c;
1637a3c3d58SStefano Zampini   PetscBool      cisdense;
164abc3b08eSStefano Zampini 
165abc3b08eSStefano Zampini   PetscFunctionBegin;
1669566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C,P->cmap->n,P->cmap->n,P->cmap->N,P->cmap->N));
1679566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATSEQDENSE,MATSEQDENSECUDA,""));
1687a3c3d58SStefano Zampini   if (!cisdense) {
1697a3c3d58SStefano Zampini     PetscBool flg;
1707a3c3d58SStefano Zampini 
1719566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompare((PetscObject)P,((PetscObject)A)->type_name,&flg));
1729566063dSJacob Faibussowitsch     PetscCall(MatSetType(C,flg ? ((PetscObject)A)->type_name : MATDENSE));
1737a3c3d58SStefano Zampini   }
1749566063dSJacob Faibussowitsch   PetscCall(MatSetUp(C));
1754222ddf1SHong Zhang   c    = (Mat_SeqDense*)C->data;
1769566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&c->ptapwork));
1779566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(c->ptapwork,A->rmap->n,P->cmap->n,A->rmap->N,P->cmap->N));
1789566063dSJacob Faibussowitsch   PetscCall(MatSetType(c->ptapwork,((PetscObject)C)->type_name));
1799566063dSJacob Faibussowitsch   PetscCall(MatSetUp(c->ptapwork));
180abc3b08eSStefano Zampini   PetscFunctionReturn(0);
181abc3b08eSStefano Zampini }
182abc3b08eSStefano Zampini 
183cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqAIJ_SeqDense(Mat A,MatType newtype,MatReuse reuse,Mat *newmat)
184b49cda9fSStefano Zampini {
185a13144ffSStefano Zampini   Mat             B = NULL;
186b49cda9fSStefano Zampini   Mat_SeqAIJ      *a = (Mat_SeqAIJ*)A->data;
187b49cda9fSStefano Zampini   Mat_SeqDense    *b;
188b49cda9fSStefano Zampini   PetscInt        *ai=a->i,*aj=a->j,m=A->rmap->N,n=A->cmap->N,i;
1892e5835c6SStefano Zampini   const MatScalar *av;
190a13144ffSStefano Zampini   PetscBool       isseqdense;
191b49cda9fSStefano Zampini 
192b49cda9fSStefano Zampini   PetscFunctionBegin;
193a13144ffSStefano Zampini   if (reuse == MAT_REUSE_MATRIX) {
1949566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompare((PetscObject)*newmat,MATSEQDENSE,&isseqdense));
19528b400f6SJacob Faibussowitsch     PetscCheck(isseqdense,PetscObjectComm((PetscObject)*newmat),PETSC_ERR_USER,"Cannot reuse matrix of type %s",((PetscObject)(*newmat))->type_name);
196a13144ffSStefano Zampini   }
197a13144ffSStefano Zampini   if (reuse != MAT_REUSE_MATRIX) {
1989566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B));
1999566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B,m,n,m,n));
2009566063dSJacob Faibussowitsch     PetscCall(MatSetType(B,MATSEQDENSE));
2019566063dSJacob Faibussowitsch     PetscCall(MatSeqDenseSetPreallocation(B,NULL));
202b49cda9fSStefano Zampini     b    = (Mat_SeqDense*)(B->data);
203a13144ffSStefano Zampini   } else {
204a13144ffSStefano Zampini     b    = (Mat_SeqDense*)((*newmat)->data);
2059566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(b->v,m*n));
206a13144ffSStefano Zampini   }
2079566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(A,&av));
208b49cda9fSStefano Zampini   for (i=0; i<m; i++) {
209b49cda9fSStefano Zampini     PetscInt j;
210b49cda9fSStefano Zampini     for (j=0;j<ai[1]-ai[0];j++) {
211b49cda9fSStefano Zampini       b->v[*aj*m+i] = *av;
212b49cda9fSStefano Zampini       aj++;
213b49cda9fSStefano Zampini       av++;
214b49cda9fSStefano Zampini     }
215b49cda9fSStefano Zampini     ai++;
216b49cda9fSStefano Zampini   }
2179566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(A,&av));
218b49cda9fSStefano Zampini 
219511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
2209566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY));
2219566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY));
2229566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A,&B));
223b49cda9fSStefano Zampini   } else {
224a13144ffSStefano Zampini     if (B) *newmat = B;
2259566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(*newmat,MAT_FINAL_ASSEMBLY));
2269566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(*newmat,MAT_FINAL_ASSEMBLY));
227b49cda9fSStefano Zampini   }
228b49cda9fSStefano Zampini   PetscFunctionReturn(0);
229b49cda9fSStefano Zampini }
230b49cda9fSStefano Zampini 
231cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqDense_SeqAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat)
2326a63e612SBarry Smith {
2336d4ec7b0SPierre Jolivet   Mat            B = NULL;
2346a63e612SBarry Smith   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
2359399e1b8SMatthew G. Knepley   PetscInt       i, j;
2369399e1b8SMatthew G. Knepley   PetscInt       *rows, *nnz;
2379399e1b8SMatthew G. Knepley   MatScalar      *aa = a->v, *vals;
2386a63e612SBarry Smith 
2396a63e612SBarry Smith   PetscFunctionBegin;
2409566063dSJacob Faibussowitsch   PetscCall(PetscCalloc3(A->rmap->n,&rows,A->rmap->n,&nnz,A->rmap->n,&vals));
2416d4ec7b0SPierre Jolivet   if (reuse != MAT_REUSE_MATRIX) {
2429566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B));
2439566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N));
2449566063dSJacob Faibussowitsch     PetscCall(MatSetType(B,MATSEQAIJ));
2459399e1b8SMatthew G. Knepley     for (j=0; j<A->cmap->n; j++) {
2466d4ec7b0SPierre Jolivet       for (i=0; i<A->rmap->n; i++) if (aa[i] != 0.0 || (i == j && A->cmap->n == A->rmap->n)) ++nnz[i];
2476a63e612SBarry Smith       aa += a->lda;
2486a63e612SBarry Smith     }
2499566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(B,PETSC_DETERMINE,nnz));
2506d4ec7b0SPierre Jolivet   } else B = *newmat;
2519399e1b8SMatthew G. Knepley   aa = a->v;
2529399e1b8SMatthew G. Knepley   for (j=0; j<A->cmap->n; j++) {
2539399e1b8SMatthew G. Knepley     PetscInt numRows = 0;
2546d4ec7b0SPierre Jolivet     for (i=0; i<A->rmap->n; i++) if (aa[i] != 0.0 || (i == j && A->cmap->n == A->rmap->n)) {rows[numRows] = i; vals[numRows++] = aa[i];}
2559566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B,numRows,rows,1,&j,vals,INSERT_VALUES));
2569399e1b8SMatthew G. Knepley     aa  += a->lda;
2579399e1b8SMatthew G. Knepley   }
2589566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rows,nnz,vals));
2599566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY));
2609566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY));
2616a63e612SBarry Smith 
262511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
2639566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A,&B));
2646d4ec7b0SPierre Jolivet   } else if (reuse != MAT_REUSE_MATRIX) *newmat = B;
2656a63e612SBarry Smith   PetscFunctionReturn(0);
2666a63e612SBarry Smith }
2676a63e612SBarry Smith 
268ca15aa20SStefano Zampini PetscErrorCode MatAXPY_SeqDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str)
2691987afe7SBarry Smith {
2701987afe7SBarry Smith   Mat_SeqDense      *x = (Mat_SeqDense*)X->data,*y = (Mat_SeqDense*)Y->data;
271ca15aa20SStefano Zampini   const PetscScalar *xv;
272ca15aa20SStefano Zampini   PetscScalar       *yv;
27323fff9afSBarry Smith   PetscBLASInt      N,m,ldax = 0,lday = 0,one = 1;
2743a40ed3dSBarry Smith 
2753a40ed3dSBarry Smith   PetscFunctionBegin;
2769566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(X,&xv));
2779566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(Y,&yv));
2789566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(X->rmap->n*X->cmap->n,&N));
2799566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(X->rmap->n,&m));
2809566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(x->lda,&ldax));
2819566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(y->lda,&lday));
282a5ce6ee0Svictorle   if (ldax>m || lday>m) {
283ca15aa20SStefano Zampini     PetscInt j;
284ca15aa20SStefano Zampini 
285d0f46423SBarry Smith     for (j=0; j<X->cmap->n; j++) {
286ca15aa20SStefano Zampini       PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&m,&alpha,xv+j*ldax,&one,yv+j*lday,&one));
287a5ce6ee0Svictorle     }
288a5ce6ee0Svictorle   } else {
289ca15aa20SStefano Zampini     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&N,&alpha,xv,&one,yv,&one));
290a5ce6ee0Svictorle   }
2919566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(X,&xv));
2929566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(Y,&yv));
2939566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(PetscMax(2.0*N-1,0)));
2943a40ed3dSBarry Smith   PetscFunctionReturn(0);
2951987afe7SBarry Smith }
2961987afe7SBarry Smith 
297e0877f53SBarry Smith static PetscErrorCode MatGetInfo_SeqDense(Mat A,MatInfoType flag,MatInfo *info)
298289bc588SBarry Smith {
299ca15aa20SStefano Zampini   PetscLogDouble N = A->rmap->n*A->cmap->n;
3003a40ed3dSBarry Smith 
3013a40ed3dSBarry Smith   PetscFunctionBegin;
3024e220ebcSLois Curfman McInnes   info->block_size        = 1.0;
303ca15aa20SStefano Zampini   info->nz_allocated      = N;
304ca15aa20SStefano Zampini   info->nz_used           = N;
305ca15aa20SStefano Zampini   info->nz_unneeded       = 0;
306ca15aa20SStefano Zampini   info->assemblies        = A->num_ass;
3074e220ebcSLois Curfman McInnes   info->mallocs           = 0;
3087adad957SLisandro Dalcin   info->memory            = ((PetscObject)A)->mem;
3094e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0;
3104e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
3114e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
3123a40ed3dSBarry Smith   PetscFunctionReturn(0);
313289bc588SBarry Smith }
314289bc588SBarry Smith 
315637a0070SStefano Zampini PetscErrorCode MatScale_SeqDense(Mat A,PetscScalar alpha)
31680cd9d93SLois Curfman McInnes {
317273d9f13SBarry Smith   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
318ca15aa20SStefano Zampini   PetscScalar    *v;
31923fff9afSBarry Smith   PetscBLASInt   one = 1,j,nz,lda = 0;
32080cd9d93SLois Curfman McInnes 
3213a40ed3dSBarry Smith   PetscFunctionBegin;
3229566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(A,&v));
3239566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(a->lda,&lda));
324d0f46423SBarry Smith   if (lda>A->rmap->n) {
3259566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(A->rmap->n,&nz));
326d0f46423SBarry Smith     for (j=0; j<A->cmap->n; j++) {
327ca15aa20SStefano Zampini       PetscStackCallBLAS("BLASscal",BLASscal_(&nz,&alpha,v+j*lda,&one));
328a5ce6ee0Svictorle     }
329a5ce6ee0Svictorle   } else {
3309566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(A->rmap->n*A->cmap->n,&nz));
331ca15aa20SStefano Zampini     PetscStackCallBLAS("BLASscal",BLASscal_(&nz,&alpha,v,&one));
332a5ce6ee0Svictorle   }
3339566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(nz));
3349566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(A,&v));
3353a40ed3dSBarry Smith   PetscFunctionReturn(0);
33680cd9d93SLois Curfman McInnes }
33780cd9d93SLois Curfman McInnes 
338e0877f53SBarry Smith static PetscErrorCode MatIsHermitian_SeqDense(Mat A,PetscReal rtol,PetscBool  *fl)
3391cbb95d3SBarry Smith {
3401cbb95d3SBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
341ca15aa20SStefano Zampini   PetscInt          i,j,m = A->rmap->n,N = a->lda;
342ca15aa20SStefano Zampini   const PetscScalar *v;
3431cbb95d3SBarry Smith 
3441cbb95d3SBarry Smith   PetscFunctionBegin;
3451cbb95d3SBarry Smith   *fl = PETSC_FALSE;
346d0f46423SBarry Smith   if (A->rmap->n != A->cmap->n) PetscFunctionReturn(0);
3479566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A,&v));
3481cbb95d3SBarry Smith   for (i=0; i<m; i++) {
349ca15aa20SStefano Zampini     for (j=i; j<m; j++) {
350637a0070SStefano Zampini       if (PetscAbsScalar(v[i+j*N] - PetscConj(v[j+i*N])) > rtol) {
351637a0070SStefano Zampini         goto restore;
3521cbb95d3SBarry Smith       }
3531cbb95d3SBarry Smith     }
354637a0070SStefano Zampini   }
3551cbb95d3SBarry Smith   *fl  = PETSC_TRUE;
356637a0070SStefano Zampini restore:
3579566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A,&v));
358637a0070SStefano Zampini   PetscFunctionReturn(0);
359637a0070SStefano Zampini }
360637a0070SStefano Zampini 
361637a0070SStefano Zampini static PetscErrorCode MatIsSymmetric_SeqDense(Mat A,PetscReal rtol,PetscBool  *fl)
362637a0070SStefano Zampini {
363637a0070SStefano Zampini   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
364637a0070SStefano Zampini   PetscInt          i,j,m = A->rmap->n,N = a->lda;
365637a0070SStefano Zampini   const PetscScalar *v;
366637a0070SStefano Zampini 
367637a0070SStefano Zampini   PetscFunctionBegin;
368637a0070SStefano Zampini   *fl = PETSC_FALSE;
369637a0070SStefano Zampini   if (A->rmap->n != A->cmap->n) PetscFunctionReturn(0);
3709566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A,&v));
371637a0070SStefano Zampini   for (i=0; i<m; i++) {
372637a0070SStefano Zampini     for (j=i; j<m; j++) {
373637a0070SStefano Zampini       if (PetscAbsScalar(v[i+j*N] - v[j+i*N]) > rtol) {
374637a0070SStefano Zampini         goto restore;
375637a0070SStefano Zampini       }
376637a0070SStefano Zampini     }
377637a0070SStefano Zampini   }
378637a0070SStefano Zampini   *fl  = PETSC_TRUE;
379637a0070SStefano Zampini restore:
3809566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A,&v));
3811cbb95d3SBarry Smith   PetscFunctionReturn(0);
3821cbb95d3SBarry Smith }
3831cbb95d3SBarry Smith 
384ca15aa20SStefano Zampini PetscErrorCode MatDuplicateNoCreate_SeqDense(Mat newi,Mat A,MatDuplicateOption cpvalues)
385b24902e0SBarry Smith {
386ca15aa20SStefano Zampini   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
38723fc5dcaSStefano Zampini   PetscInt       lda = (PetscInt)mat->lda,j,m,nlda = lda;
38875f6d85dSStefano Zampini   PetscBool      isdensecpu;
389b24902e0SBarry Smith 
390b24902e0SBarry Smith   PetscFunctionBegin;
3919566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(A->rmap,&newi->rmap));
3929566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(A->cmap,&newi->cmap));
39323fc5dcaSStefano Zampini   if (cpvalues == MAT_SHARE_NONZERO_PATTERN) { /* propagate LDA */
3949566063dSJacob Faibussowitsch     PetscCall(MatDenseSetLDA(newi,lda));
39523fc5dcaSStefano Zampini   }
3969566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)newi,MATSEQDENSE,&isdensecpu));
3979566063dSJacob Faibussowitsch   if (isdensecpu) PetscCall(MatSeqDenseSetPreallocation(newi,NULL));
398b24902e0SBarry Smith   if (cpvalues == MAT_COPY_VALUES) {
399ca15aa20SStefano Zampini     const PetscScalar *av;
400ca15aa20SStefano Zampini     PetscScalar       *v;
401ca15aa20SStefano Zampini 
4029566063dSJacob Faibussowitsch     PetscCall(MatDenseGetArrayRead(A,&av));
4039566063dSJacob Faibussowitsch     PetscCall(MatDenseGetArrayWrite(newi,&v));
4049566063dSJacob Faibussowitsch     PetscCall(MatDenseGetLDA(newi,&nlda));
405d0f46423SBarry Smith     m    = A->rmap->n;
40623fc5dcaSStefano Zampini     if (lda>m || nlda>m) {
407d0f46423SBarry Smith       for (j=0; j<A->cmap->n; j++) {
4089566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(v+j*nlda,av+j*lda,m));
409b24902e0SBarry Smith       }
410b24902e0SBarry Smith     } else {
4119566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(v,av,A->rmap->n*A->cmap->n));
412b24902e0SBarry Smith     }
4139566063dSJacob Faibussowitsch     PetscCall(MatDenseRestoreArrayWrite(newi,&v));
4149566063dSJacob Faibussowitsch     PetscCall(MatDenseRestoreArrayRead(A,&av));
415b24902e0SBarry Smith   }
416b24902e0SBarry Smith   PetscFunctionReturn(0);
417b24902e0SBarry Smith }
418b24902e0SBarry Smith 
419ca15aa20SStefano Zampini PetscErrorCode MatDuplicate_SeqDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat)
42002cad45dSBarry Smith {
4213a40ed3dSBarry Smith   PetscFunctionBegin;
4229566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)A),newmat));
4239566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*newmat,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n));
4249566063dSJacob Faibussowitsch   PetscCall(MatSetType(*newmat,((PetscObject)A)->type_name));
4259566063dSJacob Faibussowitsch   PetscCall(MatDuplicateNoCreate_SeqDense(*newmat,A,cpvalues));
426b24902e0SBarry Smith   PetscFunctionReturn(0);
427b24902e0SBarry Smith }
428b24902e0SBarry Smith 
429bf5a80bcSToby Isaac static PetscErrorCode MatSolve_SeqDense_Internal_LU(Mat A, PetscScalar *x, PetscBLASInt ldx, PetscBLASInt m, PetscBLASInt nrhs, PetscBLASInt k, PetscBool T)
430289bc588SBarry Smith {
431c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
4324396437dSToby Isaac   PetscBLASInt    info;
43367e560aaSBarry Smith 
4343a40ed3dSBarry Smith   PetscFunctionBegin;
4359566063dSJacob Faibussowitsch   PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
4364396437dSToby Isaac   PetscStackCallBLAS("LAPACKgetrs",LAPACKgetrs_(T ? "T" : "N",&m,&nrhs,mat->v,&mat->lda,mat->pivots,x,&m,&info));
4379566063dSJacob Faibussowitsch   PetscCall(PetscFPTrapPop());
43828b400f6SJacob Faibussowitsch   PetscCheck(!info,PETSC_COMM_SELF,PETSC_ERR_LIB,"GETRS - Bad solve");
4399566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(nrhs*(2.0*m*m - m)));
4404396437dSToby Isaac   PetscFunctionReturn(0);
4414396437dSToby Isaac }
4424396437dSToby Isaac 
4434396437dSToby Isaac static PetscErrorCode MatConjugate_SeqDense(Mat);
4444396437dSToby Isaac 
445bf5a80bcSToby Isaac static PetscErrorCode MatSolve_SeqDense_Internal_Cholesky(Mat A, PetscScalar *x, PetscBLASInt ldx, PetscBLASInt m, PetscBLASInt nrhs, PetscBLASInt k, PetscBool T)
4464396437dSToby Isaac {
4474396437dSToby Isaac   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
4484396437dSToby Isaac   PetscBLASInt    info;
4494396437dSToby Isaac 
4504396437dSToby Isaac   PetscFunctionBegin;
451a49dc2a2SStefano Zampini   if (A->spd) {
4529566063dSJacob Faibussowitsch     if (PetscDefined(USE_COMPLEX) && T) PetscCall(MatConjugate_SeqDense(A));
4539566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
4548b83055fSJed Brown     PetscStackCallBLAS("LAPACKpotrs",LAPACKpotrs_("L",&m,&nrhs,mat->v,&mat->lda,x,&m,&info));
4559566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPop());
45628b400f6SJacob Faibussowitsch     PetscCheck(!info,PETSC_COMM_SELF,PETSC_ERR_LIB,"POTRS Bad solve");
4579566063dSJacob Faibussowitsch     if (PetscDefined(USE_COMPLEX) && T) PetscCall(MatConjugate_SeqDense(A));
458a49dc2a2SStefano Zampini #if defined(PETSC_USE_COMPLEX)
459a49dc2a2SStefano Zampini   } else if (A->hermitian) {
4609566063dSJacob Faibussowitsch     if (T) PetscCall(MatConjugate_SeqDense(A));
4619566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
462a49dc2a2SStefano Zampini     PetscStackCallBLAS("LAPACKhetrs",LAPACKhetrs_("L",&m,&nrhs,mat->v,&mat->lda,mat->pivots,x,&m,&info));
4639566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPop());
46428b400f6SJacob Faibussowitsch     PetscCheck(!info,PETSC_COMM_SELF,PETSC_ERR_LIB,"HETRS Bad solve");
4659566063dSJacob Faibussowitsch     if (T) PetscCall(MatConjugate_SeqDense(A));
466a49dc2a2SStefano Zampini #endif
467a49dc2a2SStefano Zampini   } else { /* symmetric case */
4689566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
469a49dc2a2SStefano Zampini     PetscStackCallBLAS("LAPACKsytrs",LAPACKsytrs_("L",&m,&nrhs,mat->v,&mat->lda,mat->pivots,x,&m,&info));
4709566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPop());
47128b400f6SJacob Faibussowitsch     PetscCheck(!info,PETSC_COMM_SELF,PETSC_ERR_LIB,"SYTRS Bad solve");
472a49dc2a2SStefano Zampini   }
4739566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(nrhs*(2.0*m*m - m)));
4744396437dSToby Isaac   PetscFunctionReturn(0);
4754396437dSToby Isaac }
47685e2c93fSHong Zhang 
477bf5a80bcSToby Isaac static PetscErrorCode MatSolve_SeqDense_Internal_QR(Mat A, PetscScalar *x, PetscBLASInt ldx, PetscBLASInt m, PetscBLASInt nrhs, PetscBLASInt k)
4784396437dSToby Isaac {
4794396437dSToby Isaac   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
4804396437dSToby Isaac   PetscBLASInt    info;
4814396437dSToby Isaac   char            trans;
4824396437dSToby Isaac 
4834396437dSToby Isaac   PetscFunctionBegin;
4844905a7bcSToby Isaac   if (PetscDefined(USE_COMPLEX)) {
4854905a7bcSToby Isaac     trans = 'C';
4864905a7bcSToby Isaac   } else {
4874905a7bcSToby Isaac     trans = 'T';
4884905a7bcSToby Isaac   }
4899566063dSJacob Faibussowitsch   PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
490bf5a80bcSToby Isaac   PetscStackCallBLAS("LAPACKormqr",LAPACKormqr_("L", &trans, &m,&nrhs,&mat->rank,mat->v,&mat->lda,mat->tau,x,&ldx,mat->fwork,&mat->lfwork,&info));
4919566063dSJacob Faibussowitsch   PetscCall(PetscFPTrapPop());
49228b400f6SJacob Faibussowitsch   PetscCheck(!info,PETSC_COMM_SELF,PETSC_ERR_LIB,"ORMQR - Bad orthogonal transform");
4939566063dSJacob Faibussowitsch   PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
494bf5a80bcSToby Isaac   PetscStackCallBLAS("LAPACKtrtrs",LAPACKtrtrs_("U", "N", "N", &mat->rank,&nrhs,mat->v,&mat->lda,x,&ldx,&info));
4959566063dSJacob Faibussowitsch   PetscCall(PetscFPTrapPop());
49628b400f6SJacob Faibussowitsch   PetscCheck(!info,PETSC_COMM_SELF,PETSC_ERR_LIB,"TRTRS - Bad triangular solve");
4974905a7bcSToby Isaac   for (PetscInt j = 0; j < nrhs; j++) {
4984905a7bcSToby Isaac     for (PetscInt i = mat->rank; i < k; i++) {
499bf5a80bcSToby Isaac       x[j*ldx + i] = 0.;
5004905a7bcSToby Isaac     }
5014905a7bcSToby Isaac   }
5029566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(nrhs*(4.0*m*mat->rank - PetscSqr(mat->rank))));
5034905a7bcSToby Isaac   PetscFunctionReturn(0);
5044905a7bcSToby Isaac }
5054905a7bcSToby Isaac 
506bf5a80bcSToby Isaac static PetscErrorCode MatSolveTranspose_SeqDense_Internal_QR(Mat A, PetscScalar *x, PetscBLASInt ldx, PetscBLASInt m, PetscBLASInt nrhs, PetscBLASInt k)
5074905a7bcSToby Isaac {
5084396437dSToby Isaac   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
5094396437dSToby Isaac   PetscBLASInt      info;
5104396437dSToby Isaac 
5114396437dSToby Isaac   PetscFunctionBegin;
5124396437dSToby Isaac   if (A->rmap->n == A->cmap->n && mat->rank == A->rmap->n) {
5139566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
514bf5a80bcSToby Isaac     PetscStackCallBLAS("LAPACKtrtrs",LAPACKtrtrs_("U", "T", "N", &m,&nrhs,mat->v,&mat->lda,x,&ldx,&info));
5159566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPop());
51628b400f6SJacob Faibussowitsch     PetscCheck(!info,PETSC_COMM_SELF,PETSC_ERR_LIB,"TRTRS - Bad triangular solve");
5179566063dSJacob Faibussowitsch     if (PetscDefined(USE_COMPLEX)) PetscCall(MatConjugate_SeqDense(A));
5189566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
519bf5a80bcSToby Isaac     PetscStackCallBLAS("LAPACKormqr",LAPACKormqr_("L", "N", &m,&nrhs,&mat->rank,mat->v,&mat->lda,mat->tau,x,&ldx,mat->fwork,&mat->lfwork,&info));
5209566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPop());
52128b400f6SJacob Faibussowitsch     PetscCheck(!info,PETSC_COMM_SELF,PETSC_ERR_LIB,"ORMQR - Bad orthogonal transform");
5229566063dSJacob Faibussowitsch     if (PetscDefined(USE_COMPLEX)) PetscCall(MatConjugate_SeqDense(A));
5234396437dSToby Isaac   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"QR factored matrix cannot be used for transpose solve");
5249566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(nrhs*(4.0*m*mat->rank - PetscSqr(mat->rank))));
5254396437dSToby Isaac   PetscFunctionReturn(0);
5264396437dSToby Isaac }
5274396437dSToby Isaac 
5284396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_SetUp(Mat A, Vec xx, Vec yy, PetscScalar **_y, PetscBLASInt *_m, PetscBLASInt *_k)
5294396437dSToby Isaac {
5304396437dSToby Isaac   Mat_SeqDense      *mat = (Mat_SeqDense *) A->data;
5314905a7bcSToby Isaac   PetscScalar       *y;
5324905a7bcSToby Isaac   PetscBLASInt      m=0, k=0;
5334905a7bcSToby Isaac 
5344905a7bcSToby Isaac   PetscFunctionBegin;
5359566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(A->rmap->n,&m));
5369566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(A->cmap->n,&k));
5374905a7bcSToby Isaac   if (k < m) {
5389566063dSJacob Faibussowitsch     PetscCall(VecCopy(xx, mat->qrrhs));
5399566063dSJacob Faibussowitsch     PetscCall(VecGetArray(mat->qrrhs,&y));
5404905a7bcSToby Isaac   } else {
5419566063dSJacob Faibussowitsch     PetscCall(VecCopy(xx, yy));
5429566063dSJacob Faibussowitsch     PetscCall(VecGetArray(yy,&y));
5434905a7bcSToby Isaac   }
5444396437dSToby Isaac   *_y = y;
5454396437dSToby Isaac   *_k = k;
5464396437dSToby Isaac   *_m = m;
5474396437dSToby Isaac   PetscFunctionReturn(0);
5484396437dSToby Isaac }
5494396437dSToby Isaac 
5504396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_TearDown(Mat A, Vec xx, Vec yy, PetscScalar **_y, PetscBLASInt *_m, PetscBLASInt *_k)
5514396437dSToby Isaac {
5524396437dSToby Isaac   Mat_SeqDense   *mat = (Mat_SeqDense *) A->data;
55342e9364cSSatish Balay   PetscScalar    *y = NULL;
5544396437dSToby Isaac   PetscBLASInt   m, k;
5554396437dSToby Isaac 
5564396437dSToby Isaac   PetscFunctionBegin;
5574396437dSToby Isaac   y   = *_y;
5584396437dSToby Isaac   *_y = NULL;
5594396437dSToby Isaac   k   = *_k;
5604396437dSToby Isaac   m   = *_m;
5614905a7bcSToby Isaac   if (k < m) {
5624905a7bcSToby Isaac     PetscScalar *yv;
5639566063dSJacob Faibussowitsch     PetscCall(VecGetArray(yy,&yv));
5649566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(yv, y, k));
5659566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(yy,&yv));
5669566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(mat->qrrhs, &y));
5674905a7bcSToby Isaac   } else {
5689566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(yy,&y));
5694905a7bcSToby Isaac   }
5704905a7bcSToby Isaac   PetscFunctionReturn(0);
5714905a7bcSToby Isaac }
5724905a7bcSToby Isaac 
5734396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_LU(Mat A, Vec xx, Vec yy)
5744396437dSToby Isaac {
57542e9364cSSatish Balay   PetscScalar    *y = NULL;
57642e9364cSSatish Balay   PetscBLASInt   m = 0, k = 0;
5774396437dSToby Isaac 
5784396437dSToby Isaac   PetscFunctionBegin;
5799566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k));
5809566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_Internal_LU(A, y, m, m, 1, k, PETSC_FALSE));
5819566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k));
5824396437dSToby Isaac   PetscFunctionReturn(0);
5834396437dSToby Isaac }
5844396437dSToby Isaac 
5854396437dSToby Isaac static PetscErrorCode MatSolveTranspose_SeqDense_LU(Mat A, Vec xx, Vec yy)
5864396437dSToby Isaac {
58742e9364cSSatish Balay   PetscScalar    *y = NULL;
58842e9364cSSatish Balay   PetscBLASInt   m = 0, k = 0;
5894396437dSToby Isaac 
5904396437dSToby Isaac   PetscFunctionBegin;
5919566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k));
5929566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_Internal_LU(A, y, m, m, 1, k, PETSC_TRUE));
5939566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k));
5944396437dSToby Isaac   PetscFunctionReturn(0);
5954396437dSToby Isaac }
5964396437dSToby Isaac 
5974396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_Cholesky(Mat A, Vec xx, Vec yy)
5984396437dSToby Isaac {
599e54beecaSStefano Zampini   PetscScalar    *y = NULL;
600e54beecaSStefano Zampini   PetscBLASInt   m = 0, k = 0;
6014396437dSToby Isaac 
6024396437dSToby Isaac   PetscFunctionBegin;
6039566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k));
6049566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_Internal_Cholesky(A, y, m, m, 1, k, PETSC_FALSE));
6059566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k));
6064396437dSToby Isaac   PetscFunctionReturn(0);
6074396437dSToby Isaac }
6084396437dSToby Isaac 
6094396437dSToby Isaac static PetscErrorCode MatSolveTranspose_SeqDense_Cholesky(Mat A, Vec xx, Vec yy)
6104396437dSToby Isaac {
611e54beecaSStefano Zampini   PetscScalar    *y = NULL;
612e54beecaSStefano Zampini   PetscBLASInt   m = 0, k = 0;
6134396437dSToby Isaac 
6144396437dSToby Isaac   PetscFunctionBegin;
6159566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k));
6169566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_Internal_Cholesky(A, y, m, m, 1, k, PETSC_TRUE));
6179566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k));
6184396437dSToby Isaac   PetscFunctionReturn(0);
6194396437dSToby Isaac }
6204396437dSToby Isaac 
6214396437dSToby Isaac static PetscErrorCode MatSolve_SeqDense_QR(Mat A, Vec xx, Vec yy)
6224396437dSToby Isaac {
623e54beecaSStefano Zampini   PetscScalar    *y = NULL;
624e54beecaSStefano Zampini   PetscBLASInt   m = 0, k = 0;
6254396437dSToby Isaac 
6264396437dSToby Isaac   PetscFunctionBegin;
6279566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k));
6289566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_Internal_QR(A, y, PetscMax(m,k), m, 1, k));
6299566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k));
6304396437dSToby Isaac   PetscFunctionReturn(0);
6314396437dSToby Isaac }
6324396437dSToby Isaac 
6334396437dSToby Isaac static PetscErrorCode MatSolveTranspose_SeqDense_QR(Mat A, Vec xx, Vec yy)
6344396437dSToby Isaac {
63542e9364cSSatish Balay   PetscScalar    *y = NULL;
63642e9364cSSatish Balay   PetscBLASInt   m = 0, k = 0;
6374396437dSToby Isaac 
6384396437dSToby Isaac   PetscFunctionBegin;
6399566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_SetUp(A, xx, yy, &y, &m, &k));
6409566063dSJacob Faibussowitsch   PetscCall(MatSolveTranspose_SeqDense_Internal_QR(A, y, PetscMax(m,k), m, 1, k));
6419566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_TearDown(A, xx, yy, &y, &m, &k));
6424396437dSToby Isaac   PetscFunctionReturn(0);
6434396437dSToby Isaac }
6444396437dSToby Isaac 
645bf5a80bcSToby Isaac static PetscErrorCode MatMatSolve_SeqDense_SetUp(Mat A, Mat B, Mat X, PetscScalar **_y, PetscBLASInt *_ldy, PetscBLASInt *_m, PetscBLASInt *_nrhs, PetscBLASInt *_k)
6464905a7bcSToby Isaac {
6474905a7bcSToby Isaac   const PetscScalar *b;
6484396437dSToby Isaac   PetscScalar       *y;
649bf5a80bcSToby Isaac   PetscInt          n, _ldb, _ldx;
650bf5a80bcSToby Isaac   PetscBLASInt      nrhs=0,m=0,k=0,ldb=0,ldx=0,ldy=0;
6514905a7bcSToby Isaac 
6524905a7bcSToby Isaac   PetscFunctionBegin;
6536280eecaSJose E. Roman   *_ldy=0; *_m=0; *_nrhs=0; *_k=0; *_y = NULL;
6549566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(A->rmap->n,&m));
6559566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(A->cmap->n,&k));
6569566063dSJacob Faibussowitsch   PetscCall(MatGetSize(B,NULL,&n));
6579566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(n,&nrhs));
6589566063dSJacob Faibussowitsch   PetscCall(MatDenseGetLDA(B,&_ldb));
6599566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(_ldb, &ldb));
6609566063dSJacob Faibussowitsch   PetscCall(MatDenseGetLDA(X,&_ldx));
6619566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(_ldx, &ldx));
662bf5a80bcSToby Isaac   if (ldx < m) {
6639566063dSJacob Faibussowitsch     PetscCall(MatDenseGetArrayRead(B,&b));
6649566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nrhs * m, &y));
665bf5a80bcSToby Isaac     if (ldb == m) {
6669566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(y,b,ldb*nrhs));
6674905a7bcSToby Isaac     } else {
6684905a7bcSToby Isaac       for (PetscInt j = 0; j < nrhs; j++) {
6699566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(&y[j*m],&b[j*ldb],m));
6704905a7bcSToby Isaac       }
6714905a7bcSToby Isaac     }
672bf5a80bcSToby Isaac     ldy = m;
6739566063dSJacob Faibussowitsch     PetscCall(MatDenseRestoreArrayRead(B,&b));
6744905a7bcSToby Isaac   } else {
675bf5a80bcSToby Isaac     if (ldb == ldx) {
6769566063dSJacob Faibussowitsch       PetscCall(MatCopy(B, X, SAME_NONZERO_PATTERN));
6779566063dSJacob Faibussowitsch       PetscCall(MatDenseGetArray(X,&y));
6784905a7bcSToby Isaac     } else {
6799566063dSJacob Faibussowitsch       PetscCall(MatDenseGetArray(X,&y));
6809566063dSJacob Faibussowitsch       PetscCall(MatDenseGetArrayRead(B,&b));
6814905a7bcSToby Isaac       for (PetscInt j = 0; j < nrhs; j++) {
6829566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(&y[j*ldx],&b[j*ldb],m));
6834905a7bcSToby Isaac       }
6849566063dSJacob Faibussowitsch       PetscCall(MatDenseRestoreArrayRead(B,&b));
6854905a7bcSToby Isaac     }
686bf5a80bcSToby Isaac     ldy = ldx;
6874905a7bcSToby Isaac   }
6884396437dSToby Isaac   *_y    = y;
689bf5a80bcSToby Isaac   *_ldy = ldy;
6904396437dSToby Isaac   *_k    = k;
6914396437dSToby Isaac   *_m    = m;
6924396437dSToby Isaac   *_nrhs = nrhs;
6934396437dSToby Isaac   PetscFunctionReturn(0);
6944396437dSToby Isaac }
6954396437dSToby Isaac 
696bf5a80bcSToby Isaac static PetscErrorCode MatMatSolve_SeqDense_TearDown(Mat A, Mat B, Mat X, PetscScalar **_y, PetscBLASInt *_ldy, PetscBLASInt *_m, PetscBLASInt *_nrhs, PetscBLASInt *_k)
6974396437dSToby Isaac {
6984396437dSToby Isaac   PetscScalar       *y;
699bf5a80bcSToby Isaac   PetscInt          _ldx;
700bf5a80bcSToby Isaac   PetscBLASInt      k,ldy,nrhs,ldx=0;
7014396437dSToby Isaac 
7024396437dSToby Isaac   PetscFunctionBegin;
7034396437dSToby Isaac   y    = *_y;
7044396437dSToby Isaac   *_y  = NULL;
7054396437dSToby Isaac   k    = *_k;
706bf5a80bcSToby Isaac   ldy = *_ldy;
7074396437dSToby Isaac   nrhs = *_nrhs;
7089566063dSJacob Faibussowitsch   PetscCall(MatDenseGetLDA(X,&_ldx));
7099566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(_ldx, &ldx));
710bf5a80bcSToby Isaac   if (ldx != ldy) {
7114905a7bcSToby Isaac     PetscScalar *xv;
7129566063dSJacob Faibussowitsch     PetscCall(MatDenseGetArray(X,&xv));
7134905a7bcSToby Isaac     for (PetscInt j = 0; j < nrhs; j++) {
7149566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(&xv[j*ldx],&y[j*ldy],k));
7154905a7bcSToby Isaac     }
7169566063dSJacob Faibussowitsch     PetscCall(MatDenseRestoreArray(X,&xv));
7179566063dSJacob Faibussowitsch     PetscCall(PetscFree(y));
7184905a7bcSToby Isaac   } else {
7199566063dSJacob Faibussowitsch     PetscCall(MatDenseRestoreArray(X,&y));
7204905a7bcSToby Isaac   }
72185e2c93fSHong Zhang   PetscFunctionReturn(0);
72285e2c93fSHong Zhang }
72385e2c93fSHong Zhang 
7244396437dSToby Isaac static PetscErrorCode MatMatSolve_SeqDense_LU(Mat A, Mat B, Mat X)
7254396437dSToby Isaac {
7264396437dSToby Isaac   PetscScalar    *y;
727bf5a80bcSToby Isaac   PetscBLASInt   m, k, ldy, nrhs;
7284396437dSToby Isaac 
7294396437dSToby Isaac   PetscFunctionBegin;
7309566063dSJacob Faibussowitsch   PetscCall(MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ldy, &m, &nrhs, &k));
7319566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_Internal_LU(A, y, ldy, m, nrhs, k, PETSC_FALSE));
7329566063dSJacob Faibussowitsch   PetscCall(MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ldy, &m, &nrhs, &k));
7334396437dSToby Isaac   PetscFunctionReturn(0);
7344396437dSToby Isaac }
7354396437dSToby Isaac 
7364396437dSToby Isaac static PetscErrorCode MatMatSolveTranspose_SeqDense_LU(Mat A, Mat B, Mat X)
7374396437dSToby Isaac {
7384396437dSToby Isaac   PetscScalar    *y;
739bf5a80bcSToby Isaac   PetscBLASInt   m, k, ldy, nrhs;
7404396437dSToby Isaac 
7414396437dSToby Isaac   PetscFunctionBegin;
7429566063dSJacob Faibussowitsch   PetscCall(MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ldy, &m, &nrhs, &k));
7439566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_Internal_LU(A, y, ldy, m, nrhs, k, PETSC_TRUE));
7449566063dSJacob Faibussowitsch   PetscCall(MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ldy, &m, &nrhs, &k));
7454396437dSToby Isaac   PetscFunctionReturn(0);
7464396437dSToby Isaac }
7474396437dSToby Isaac 
7484396437dSToby Isaac static PetscErrorCode MatMatSolve_SeqDense_Cholesky(Mat A, Mat B, Mat X)
7494396437dSToby Isaac {
7504396437dSToby Isaac   PetscScalar    *y;
751bf5a80bcSToby Isaac   PetscBLASInt   m, k, ldy, nrhs;
7524396437dSToby Isaac 
7534396437dSToby Isaac   PetscFunctionBegin;
7549566063dSJacob Faibussowitsch   PetscCall(MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ldy, &m, &nrhs, &k));
7559566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_Internal_Cholesky(A, y, ldy, m, nrhs, k, PETSC_FALSE));
7569566063dSJacob Faibussowitsch   PetscCall(MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ldy, &m, &nrhs, &k));
7574396437dSToby Isaac   PetscFunctionReturn(0);
7584396437dSToby Isaac }
7594396437dSToby Isaac 
7604396437dSToby Isaac static PetscErrorCode MatMatSolveTranspose_SeqDense_Cholesky(Mat A, Mat B, Mat X)
7614396437dSToby Isaac {
7624396437dSToby Isaac   PetscScalar    *y;
763bf5a80bcSToby Isaac   PetscBLASInt   m, k, ldy, nrhs;
7644396437dSToby Isaac 
7654396437dSToby Isaac   PetscFunctionBegin;
7669566063dSJacob Faibussowitsch   PetscCall(MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ldy, &m, &nrhs, &k));
7679566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_Internal_Cholesky(A, y, ldy, m, nrhs, k, PETSC_TRUE));
7689566063dSJacob Faibussowitsch   PetscCall(MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ldy, &m, &nrhs, &k));
7694396437dSToby Isaac   PetscFunctionReturn(0);
7704396437dSToby Isaac }
7714396437dSToby Isaac 
7724396437dSToby Isaac static PetscErrorCode MatMatSolve_SeqDense_QR(Mat A, Mat B, Mat X)
7734396437dSToby Isaac {
7744396437dSToby Isaac   PetscScalar    *y;
775bf5a80bcSToby Isaac   PetscBLASInt   m, k, ldy, nrhs;
7764396437dSToby Isaac 
7774396437dSToby Isaac   PetscFunctionBegin;
7789566063dSJacob Faibussowitsch   PetscCall(MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ldy, &m, &nrhs, &k));
7799566063dSJacob Faibussowitsch   PetscCall(MatSolve_SeqDense_Internal_QR(A, y, ldy, m, nrhs, k));
7809566063dSJacob Faibussowitsch   PetscCall(MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ldy, &m, &nrhs, &k));
7814396437dSToby Isaac   PetscFunctionReturn(0);
7824396437dSToby Isaac }
7834396437dSToby Isaac 
7844396437dSToby Isaac static PetscErrorCode MatMatSolveTranspose_SeqDense_QR(Mat A, Mat B, Mat X)
7854396437dSToby Isaac {
7864396437dSToby Isaac   PetscScalar    *y;
787bf5a80bcSToby Isaac   PetscBLASInt   m, k, ldy, nrhs;
7884396437dSToby Isaac 
7894396437dSToby Isaac   PetscFunctionBegin;
7909566063dSJacob Faibussowitsch   PetscCall(MatMatSolve_SeqDense_SetUp(A, B, X, &y, &ldy, &m, &nrhs, &k));
7919566063dSJacob Faibussowitsch   PetscCall(MatSolveTranspose_SeqDense_Internal_QR(A, y, ldy, m, nrhs, k));
7929566063dSJacob Faibussowitsch   PetscCall(MatMatSolve_SeqDense_TearDown(A, B, X, &y, &ldy, &m, &nrhs, &k));
7934396437dSToby Isaac   PetscFunctionReturn(0);
7944396437dSToby Isaac }
7954396437dSToby Isaac 
796db4efbfdSBarry Smith /* ---------------------------------------------------------------*/
797db4efbfdSBarry Smith /* COMMENT: I have chosen to hide row permutation in the pivots,
798db4efbfdSBarry Smith    rather than put it in the Mat->row slot.*/
799ca15aa20SStefano Zampini PetscErrorCode MatLUFactor_SeqDense(Mat A,IS row,IS col,const MatFactorInfo *minfo)
800db4efbfdSBarry Smith {
801db4efbfdSBarry Smith   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
802db4efbfdSBarry Smith   PetscBLASInt   n,m,info;
803db4efbfdSBarry Smith 
804db4efbfdSBarry Smith   PetscFunctionBegin;
8059566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(A->cmap->n,&n));
8069566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(A->rmap->n,&m));
807db4efbfdSBarry Smith   if (!mat->pivots) {
8089566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(A->rmap->n,&mat->pivots));
8099566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectMemory((PetscObject)A,A->rmap->n*sizeof(PetscBLASInt)));
810db4efbfdSBarry Smith   }
811db4efbfdSBarry Smith   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
8129566063dSJacob Faibussowitsch   PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
8138b83055fSJed Brown   PetscStackCallBLAS("LAPACKgetrf",LAPACKgetrf_(&m,&n,mat->v,&mat->lda,mat->pivots,&info));
8149566063dSJacob Faibussowitsch   PetscCall(PetscFPTrapPop());
8158e57ea43SSatish Balay 
8162c71b3e2SJacob Faibussowitsch   PetscCheckFalse(info<0,PETSC_COMM_SELF,PETSC_ERR_LIB,"Bad argument to LU factorization");
8172c71b3e2SJacob Faibussowitsch   PetscCheckFalse(info>0,PETSC_COMM_SELF,PETSC_ERR_MAT_LU_ZRPVT,"Bad LU factorization");
8188208b9aeSStefano Zampini 
8194396437dSToby Isaac   A->ops->solve             = MatSolve_SeqDense_LU;
8204396437dSToby Isaac   A->ops->matsolve          = MatMatSolve_SeqDense_LU;
8214396437dSToby Isaac   A->ops->solvetranspose    = MatSolveTranspose_SeqDense_LU;
8224396437dSToby Isaac   A->ops->matsolvetranspose = MatMatSolveTranspose_SeqDense_LU;
823d5f3da31SBarry Smith   A->factortype             = MAT_FACTOR_LU;
824db4efbfdSBarry Smith 
8259566063dSJacob Faibussowitsch   PetscCall(PetscFree(A->solvertype));
8269566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(MATSOLVERPETSC,&A->solvertype));
827f6224b95SHong Zhang 
8289566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops((2.0*A->cmap->n*A->cmap->n*A->cmap->n)/3));
829db4efbfdSBarry Smith   PetscFunctionReturn(0);
830db4efbfdSBarry Smith }
831db4efbfdSBarry Smith 
8324396437dSToby Isaac static PetscErrorCode MatLUFactorNumeric_SeqDense(Mat fact,Mat A,const MatFactorInfo *info_dummy)
8334396437dSToby Isaac {
8344396437dSToby Isaac   MatFactorInfo  info;
8354396437dSToby Isaac 
8364396437dSToby Isaac   PetscFunctionBegin;
8379566063dSJacob Faibussowitsch   PetscCall(MatDuplicateNoCreate_SeqDense(fact,A,MAT_COPY_VALUES));
8389566063dSJacob Faibussowitsch   PetscCall((*fact->ops->lufactor)(fact,NULL,NULL,&info));
8394396437dSToby Isaac   PetscFunctionReturn(0);
8404396437dSToby Isaac }
8414396437dSToby Isaac 
8424396437dSToby Isaac PetscErrorCode MatLUFactorSymbolic_SeqDense(Mat fact,Mat A,IS row,IS col,const MatFactorInfo *info)
8434396437dSToby Isaac {
8444396437dSToby Isaac   PetscFunctionBegin;
8454396437dSToby Isaac   fact->preallocated           = PETSC_TRUE;
8464396437dSToby Isaac   fact->assembled              = PETSC_TRUE;
8474396437dSToby Isaac   fact->ops->lufactornumeric   = MatLUFactorNumeric_SeqDense;
8484396437dSToby Isaac   PetscFunctionReturn(0);
8494396437dSToby Isaac }
8504396437dSToby Isaac 
851a49dc2a2SStefano Zampini /* Cholesky as L*L^T or L*D*L^T and the symmetric/hermitian complex variants */
852ca15aa20SStefano Zampini PetscErrorCode MatCholeskyFactor_SeqDense(Mat A,IS perm,const MatFactorInfo *factinfo)
853db4efbfdSBarry Smith {
854db4efbfdSBarry Smith   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
855c5df96a5SBarry Smith   PetscBLASInt   info,n;
856db4efbfdSBarry Smith 
857db4efbfdSBarry Smith   PetscFunctionBegin;
8589566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(A->cmap->n,&n));
859db4efbfdSBarry Smith   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
860a49dc2a2SStefano Zampini   if (A->spd) {
8619566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
8628b83055fSJed Brown     PetscStackCallBLAS("LAPACKpotrf",LAPACKpotrf_("L",&n,mat->v,&mat->lda,&info));
8639566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPop());
864a49dc2a2SStefano Zampini #if defined(PETSC_USE_COMPLEX)
865a49dc2a2SStefano Zampini   } else if (A->hermitian) {
866a49dc2a2SStefano Zampini     if (!mat->pivots) {
8679566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(A->rmap->n,&mat->pivots));
8689566063dSJacob Faibussowitsch       PetscCall(PetscLogObjectMemory((PetscObject)A,A->rmap->n*sizeof(PetscBLASInt)));
869a49dc2a2SStefano Zampini     }
870a49dc2a2SStefano Zampini     if (!mat->fwork) {
871a49dc2a2SStefano Zampini       PetscScalar dummy;
872a49dc2a2SStefano Zampini 
873a49dc2a2SStefano Zampini       mat->lfwork = -1;
8749566063dSJacob Faibussowitsch       PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
875a49dc2a2SStefano Zampini       PetscStackCallBLAS("LAPACKhetrf",LAPACKhetrf_("L",&n,mat->v,&mat->lda,mat->pivots,&dummy,&mat->lfwork,&info));
8769566063dSJacob Faibussowitsch       PetscCall(PetscFPTrapPop());
877a49dc2a2SStefano Zampini       mat->lfwork = (PetscInt)PetscRealPart(dummy);
8789566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->lfwork,&mat->fwork));
8799566063dSJacob Faibussowitsch       PetscCall(PetscLogObjectMemory((PetscObject)A,mat->lfwork*sizeof(PetscBLASInt)));
880a49dc2a2SStefano Zampini     }
8819566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
882a49dc2a2SStefano Zampini     PetscStackCallBLAS("LAPACKhetrf",LAPACKhetrf_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&mat->lfwork,&info));
8839566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPop());
884a49dc2a2SStefano Zampini #endif
885a49dc2a2SStefano Zampini   } else { /* symmetric case */
886a49dc2a2SStefano Zampini     if (!mat->pivots) {
8879566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(A->rmap->n,&mat->pivots));
8889566063dSJacob Faibussowitsch       PetscCall(PetscLogObjectMemory((PetscObject)A,A->rmap->n*sizeof(PetscBLASInt)));
889a49dc2a2SStefano Zampini     }
890a49dc2a2SStefano Zampini     if (!mat->fwork) {
891a49dc2a2SStefano Zampini       PetscScalar dummy;
892a49dc2a2SStefano Zampini 
893a49dc2a2SStefano Zampini       mat->lfwork = -1;
8949566063dSJacob Faibussowitsch       PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
895a49dc2a2SStefano Zampini       PetscStackCallBLAS("LAPACKsytrf",LAPACKsytrf_("L",&n,mat->v,&mat->lda,mat->pivots,&dummy,&mat->lfwork,&info));
8969566063dSJacob Faibussowitsch       PetscCall(PetscFPTrapPop());
897a49dc2a2SStefano Zampini       mat->lfwork = (PetscInt)PetscRealPart(dummy);
8989566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->lfwork,&mat->fwork));
8999566063dSJacob Faibussowitsch       PetscCall(PetscLogObjectMemory((PetscObject)A,mat->lfwork*sizeof(PetscBLASInt)));
900a49dc2a2SStefano Zampini     }
9019566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
902a49dc2a2SStefano Zampini     PetscStackCallBLAS("LAPACKsytrf",LAPACKsytrf_("L",&n,mat->v,&mat->lda,mat->pivots,mat->fwork,&mat->lfwork,&info));
9039566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPop());
904a49dc2a2SStefano Zampini   }
90528b400f6SJacob Faibussowitsch   PetscCheck(!info,PETSC_COMM_SELF,PETSC_ERR_MAT_CH_ZRPVT,"Bad factorization: zero pivot in row %" PetscInt_FMT,(PetscInt)info-1);
9068208b9aeSStefano Zampini 
9074396437dSToby Isaac   A->ops->solve             = MatSolve_SeqDense_Cholesky;
9084396437dSToby Isaac   A->ops->matsolve          = MatMatSolve_SeqDense_Cholesky;
9094396437dSToby Isaac   A->ops->solvetranspose    = MatSolveTranspose_SeqDense_Cholesky;
9104396437dSToby Isaac   A->ops->matsolvetranspose = MatMatSolveTranspose_SeqDense_Cholesky;
911d5f3da31SBarry Smith   A->factortype             = MAT_FACTOR_CHOLESKY;
9122205254eSKarl Rupp 
9139566063dSJacob Faibussowitsch   PetscCall(PetscFree(A->solvertype));
9149566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(MATSOLVERPETSC,&A->solvertype));
915f6224b95SHong Zhang 
9169566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops((1.0*A->cmap->n*A->cmap->n*A->cmap->n)/3.0));
917db4efbfdSBarry Smith   PetscFunctionReturn(0);
918db4efbfdSBarry Smith }
919db4efbfdSBarry Smith 
9204396437dSToby Isaac static PetscErrorCode MatCholeskyFactorNumeric_SeqDense(Mat fact,Mat A,const MatFactorInfo *info_dummy)
921db4efbfdSBarry Smith {
922db4efbfdSBarry Smith   MatFactorInfo  info;
923db4efbfdSBarry Smith 
924db4efbfdSBarry Smith   PetscFunctionBegin;
925db4efbfdSBarry Smith   info.fill = 1.0;
9262205254eSKarl Rupp 
9279566063dSJacob Faibussowitsch   PetscCall(MatDuplicateNoCreate_SeqDense(fact,A,MAT_COPY_VALUES));
9289566063dSJacob Faibussowitsch   PetscCall((*fact->ops->choleskyfactor)(fact,NULL,&info));
929db4efbfdSBarry Smith   PetscFunctionReturn(0);
930db4efbfdSBarry Smith }
931db4efbfdSBarry Smith 
932ca15aa20SStefano Zampini PetscErrorCode MatCholeskyFactorSymbolic_SeqDense(Mat fact,Mat A,IS row,const MatFactorInfo *info)
933db4efbfdSBarry Smith {
934db4efbfdSBarry Smith   PetscFunctionBegin;
935c3ef05f6SHong Zhang   fact->assembled                  = PETSC_TRUE;
9361bbcc794SSatish Balay   fact->preallocated               = PETSC_TRUE;
937719d5645SBarry Smith   fact->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqDense;
938db4efbfdSBarry Smith   PetscFunctionReturn(0);
939db4efbfdSBarry Smith }
940db4efbfdSBarry Smith 
941bf5a80bcSToby Isaac PetscErrorCode MatQRFactor_SeqDense(Mat A,IS col,const MatFactorInfo *minfo)
9424905a7bcSToby Isaac {
9434905a7bcSToby Isaac   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
9444905a7bcSToby Isaac   PetscBLASInt   n,m,info, min, max;
9454905a7bcSToby Isaac 
9464905a7bcSToby Isaac   PetscFunctionBegin;
9479566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(A->cmap->n,&n));
9489566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(A->rmap->n,&m));
9494396437dSToby Isaac   max = PetscMax(m, n);
9504396437dSToby Isaac   min = PetscMin(m, n);
9514905a7bcSToby Isaac   if (!mat->tau) {
9529566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(min,&mat->tau));
9539566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectMemory((PetscObject)A,min*sizeof(PetscScalar)));
9544396437dSToby Isaac   }
9554396437dSToby Isaac   if (!mat->pivots) {
9569566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(n,&mat->pivots));
9579566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectMemory((PetscObject)A,n*sizeof(PetscScalar)));
9584396437dSToby Isaac   }
9594396437dSToby Isaac   if (!mat->qrrhs) {
9609566063dSJacob Faibussowitsch     PetscCall(MatCreateVecs(A, NULL, &(mat->qrrhs)));
9614905a7bcSToby Isaac   }
9624905a7bcSToby Isaac   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
9634905a7bcSToby Isaac   if (!mat->fwork) {
9644905a7bcSToby Isaac     PetscScalar dummy;
9654905a7bcSToby Isaac 
9664905a7bcSToby Isaac     mat->lfwork = -1;
9679566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
9684905a7bcSToby Isaac     PetscStackCallBLAS("LAPACKgeqrf",LAPACKgeqrf_(&m,&n,mat->v,&mat->lda,mat->tau,&dummy,&mat->lfwork,&info));
9699566063dSJacob Faibussowitsch     PetscCall(PetscFPTrapPop());
9704905a7bcSToby Isaac     mat->lfwork = (PetscInt)PetscRealPart(dummy);
9719566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(mat->lfwork,&mat->fwork));
9729566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectMemory((PetscObject)A,mat->lfwork*sizeof(PetscBLASInt)));
9734905a7bcSToby Isaac   }
9749566063dSJacob Faibussowitsch   PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF));
9754905a7bcSToby Isaac   PetscStackCallBLAS("LAPACKgeqrf",LAPACKgeqrf_(&m,&n,mat->v,&mat->lda,mat->tau,mat->fwork,&mat->lfwork,&info));
9769566063dSJacob Faibussowitsch   PetscCall(PetscFPTrapPop());
97728b400f6SJacob Faibussowitsch   PetscCheck(!info,PETSC_COMM_SELF,PETSC_ERR_LIB,"Bad argument to QR factorization");
9784905a7bcSToby Isaac   // TODO: try to estimate rank or test for and use geqp3 for rank revealing QR.  For now just say rank is min of m and n
9794905a7bcSToby Isaac   mat->rank = min;
9804905a7bcSToby Isaac 
9814396437dSToby Isaac   A->ops->solve             = MatSolve_SeqDense_QR;
9824396437dSToby Isaac   A->ops->matsolve          = MatMatSolve_SeqDense_QR;
9834905a7bcSToby Isaac   A->factortype             = MAT_FACTOR_QR;
9844905a7bcSToby Isaac   if (m == n) {
9854396437dSToby Isaac     A->ops->solvetranspose    = MatSolveTranspose_SeqDense_QR;
9864396437dSToby Isaac     A->ops->matsolvetranspose = MatMatSolveTranspose_SeqDense_QR;
9874905a7bcSToby Isaac   }
9884905a7bcSToby Isaac 
9899566063dSJacob Faibussowitsch   PetscCall(PetscFree(A->solvertype));
9909566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(MATSOLVERPETSC,&A->solvertype));
9914905a7bcSToby Isaac 
9929566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(2.0*min*min*(max-min/3.0)));
9934905a7bcSToby Isaac   PetscFunctionReturn(0);
9944905a7bcSToby Isaac }
9954905a7bcSToby Isaac 
9964905a7bcSToby Isaac static PetscErrorCode MatQRFactorNumeric_SeqDense(Mat fact,Mat A,const MatFactorInfo *info_dummy)
9974905a7bcSToby Isaac {
9984905a7bcSToby Isaac   MatFactorInfo  info;
9994905a7bcSToby Isaac 
10004905a7bcSToby Isaac   PetscFunctionBegin;
10014905a7bcSToby Isaac   info.fill = 1.0;
10024905a7bcSToby Isaac 
10039566063dSJacob Faibussowitsch   PetscCall(MatDuplicateNoCreate_SeqDense(fact,A,MAT_COPY_VALUES));
1004cac4c232SBarry Smith   PetscUseMethod(fact,"MatQRFactor_C",(Mat,IS,const MatFactorInfo *),(fact,NULL,&info));
10054905a7bcSToby Isaac   PetscFunctionReturn(0);
10064905a7bcSToby Isaac }
10074905a7bcSToby Isaac 
1008bf5a80bcSToby Isaac PetscErrorCode MatQRFactorSymbolic_SeqDense(Mat fact,Mat A,IS row,const MatFactorInfo *info)
10094905a7bcSToby Isaac {
10104905a7bcSToby Isaac   PetscFunctionBegin;
10114905a7bcSToby Isaac   fact->assembled                  = PETSC_TRUE;
10124905a7bcSToby Isaac   fact->preallocated               = PETSC_TRUE;
10139566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)fact,"MatQRFactorNumeric_C",MatQRFactorNumeric_SeqDense));
10144905a7bcSToby Isaac   PetscFunctionReturn(0);
10154905a7bcSToby Isaac }
10164905a7bcSToby Isaac 
1017ca15aa20SStefano Zampini /* uses LAPACK */
1018cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatGetFactor_seqdense_petsc(Mat A,MatFactorType ftype,Mat *fact)
1019db4efbfdSBarry Smith {
1020db4efbfdSBarry Smith   PetscFunctionBegin;
10219566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)A),fact));
10229566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*fact,A->rmap->n,A->cmap->n,A->rmap->n,A->cmap->n));
10239566063dSJacob Faibussowitsch   PetscCall(MatSetType(*fact,MATDENSE));
102466e17bc3SBarry Smith   (*fact)->trivialsymbolic = PETSC_TRUE;
10252a350339SBarry Smith   if (ftype == MAT_FACTOR_LU || ftype == MAT_FACTOR_ILU) {
1026db4efbfdSBarry Smith     (*fact)->ops->lufactorsymbolic = MatLUFactorSymbolic_SeqDense;
10272a350339SBarry Smith     (*fact)->ops->ilufactorsymbolic = MatLUFactorSymbolic_SeqDense;
1028bf5a80bcSToby Isaac   } else if (ftype == MAT_FACTOR_CHOLESKY || ftype == MAT_FACTOR_ICC) {
1029db4efbfdSBarry Smith     (*fact)->ops->choleskyfactorsymbolic = MatCholeskyFactorSymbolic_SeqDense;
1030bf5a80bcSToby Isaac   } else if (ftype == MAT_FACTOR_QR) {
10319566063dSJacob Faibussowitsch     PetscCall(PetscObjectComposeFunction((PetscObject)(*fact),"MatQRFactorSymbolic_C",MatQRFactorSymbolic_SeqDense));
1032db4efbfdSBarry Smith   }
1033d5f3da31SBarry Smith   (*fact)->factortype = ftype;
103400c67f3bSHong Zhang 
10359566063dSJacob Faibussowitsch   PetscCall(PetscFree((*fact)->solvertype));
10369566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(MATSOLVERPETSC,&(*fact)->solvertype));
10379566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(MATORDERINGEXTERNAL,(char**)&(*fact)->preferredordering[MAT_FACTOR_LU]));
10389566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(MATORDERINGEXTERNAL,(char**)&(*fact)->preferredordering[MAT_FACTOR_ILU]));
10399566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(MATORDERINGEXTERNAL,(char**)&(*fact)->preferredordering[MAT_FACTOR_CHOLESKY]));
10409566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(MATORDERINGEXTERNAL,(char**)&(*fact)->preferredordering[MAT_FACTOR_ICC]));
1041db4efbfdSBarry Smith   PetscFunctionReturn(0);
1042db4efbfdSBarry Smith }
1043db4efbfdSBarry Smith 
1044289bc588SBarry Smith /* ------------------------------------------------------------------*/
1045e0877f53SBarry Smith static PetscErrorCode MatSOR_SeqDense(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal shift,PetscInt its,PetscInt lits,Vec xx)
1046289bc588SBarry Smith {
1047c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
1048d9ca1df4SBarry Smith   PetscScalar       *x,*v = mat->v,zero = 0.0,xt;
1049d9ca1df4SBarry Smith   const PetscScalar *b;
1050d0f46423SBarry Smith   PetscInt          m = A->rmap->n,i;
105123fff9afSBarry Smith   PetscBLASInt      o = 1,bm = 0;
1052289bc588SBarry Smith 
10533a40ed3dSBarry Smith   PetscFunctionBegin;
1054ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA)
10552c71b3e2SJacob Faibussowitsch   PetscCheckFalse(A->offloadmask == PETSC_OFFLOAD_GPU,PETSC_COMM_SELF,PETSC_ERR_SUP,"Not implemented");
1056ca15aa20SStefano Zampini #endif
1057422a814eSBarry Smith   if (shift == -1) shift = 0.0; /* negative shift indicates do not error on zero diagonal; this code never zeros on zero diagonal */
10589566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(m,&bm));
1059289bc588SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
10603bffc371SBarry Smith     /* this is a hack fix, should have another version without the second BLASdotu */
10619566063dSJacob Faibussowitsch     PetscCall(VecSet(xx,zero));
1062289bc588SBarry Smith   }
10639566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xx,&x));
10649566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(bb,&b));
1065b965ef7fSBarry Smith   its  = its*lits;
10662c71b3e2SJacob Faibussowitsch   PetscCheckFalse(its <= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %" PetscInt_FMT " and local its %" PetscInt_FMT " both positive",its,lits);
1067289bc588SBarry Smith   while (its--) {
1068fccaa45eSBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) {
1069289bc588SBarry Smith       for (i=0; i<m; i++) {
10703bffc371SBarry Smith         PetscStackCallBLAS("BLASdotu",xt   = b[i] - BLASdotu_(&bm,v+i,&bm,x,&o));
107155a1b374SBarry Smith         x[i] = (1. - omega)*x[i] + omega*(xt+v[i + i*m]*x[i])/(v[i + i*m]+shift);
1072289bc588SBarry Smith       }
1073289bc588SBarry Smith     }
1074fccaa45eSBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
1075289bc588SBarry Smith       for (i=m-1; i>=0; i--) {
10763bffc371SBarry Smith         PetscStackCallBLAS("BLASdotu",xt   = b[i] - BLASdotu_(&bm,v+i,&bm,x,&o));
107755a1b374SBarry Smith         x[i] = (1. - omega)*x[i] + omega*(xt+v[i + i*m]*x[i])/(v[i + i*m]+shift);
1078289bc588SBarry Smith       }
1079289bc588SBarry Smith     }
1080289bc588SBarry Smith   }
10819566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(bb,&b));
10829566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xx,&x));
10833a40ed3dSBarry Smith   PetscFunctionReturn(0);
1084289bc588SBarry Smith }
1085289bc588SBarry Smith 
1086289bc588SBarry Smith /* -----------------------------------------------------------------*/
1087ca15aa20SStefano Zampini PetscErrorCode MatMultTranspose_SeqDense(Mat A,Vec xx,Vec yy)
1088289bc588SBarry Smith {
1089c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
1090d9ca1df4SBarry Smith   const PetscScalar *v   = mat->v,*x;
1091d9ca1df4SBarry Smith   PetscScalar       *y;
10920805154bSBarry Smith   PetscBLASInt      m, n,_One=1;
1093ea709b57SSatish Balay   PetscScalar       _DOne=1.0,_DZero=0.0;
10943a40ed3dSBarry Smith 
10953a40ed3dSBarry Smith   PetscFunctionBegin;
10969566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(A->rmap->n,&m));
10979566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(A->cmap->n,&n));
10989566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx,&x));
10999566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(yy,&y));
11005ac36cfcSBarry Smith   if (!A->rmap->n || !A->cmap->n) {
11015ac36cfcSBarry Smith     PetscBLASInt i;
11025ac36cfcSBarry Smith     for (i=0; i<n; i++) y[i] = 0.0;
11035ac36cfcSBarry Smith   } else {
11048b83055fSJed Brown     PetscStackCallBLAS("BLASgemv",BLASgemv_("T",&m,&n,&_DOne,v,&mat->lda,x,&_One,&_DZero,y,&_One));
11059566063dSJacob Faibussowitsch     PetscCall(PetscLogFlops(2.0*A->rmap->n*A->cmap->n - A->cmap->n));
11065ac36cfcSBarry Smith   }
11079566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx,&x));
11089566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(yy,&y));
11093a40ed3dSBarry Smith   PetscFunctionReturn(0);
1110289bc588SBarry Smith }
1111800995b7SMatthew Knepley 
1112ca15aa20SStefano Zampini PetscErrorCode MatMult_SeqDense(Mat A,Vec xx,Vec yy)
1113289bc588SBarry Smith {
1114c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
1115d9ca1df4SBarry Smith   PetscScalar       *y,_DOne=1.0,_DZero=0.0;
11160805154bSBarry Smith   PetscBLASInt      m, n, _One=1;
1117d9ca1df4SBarry Smith   const PetscScalar *v = mat->v,*x;
11183a40ed3dSBarry Smith 
11193a40ed3dSBarry Smith   PetscFunctionBegin;
11209566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(A->rmap->n,&m));
11219566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(A->cmap->n,&n));
11229566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx,&x));
11239566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(yy,&y));
11245ac36cfcSBarry Smith   if (!A->rmap->n || !A->cmap->n) {
11255ac36cfcSBarry Smith     PetscBLASInt i;
11265ac36cfcSBarry Smith     for (i=0; i<m; i++) y[i] = 0.0;
11275ac36cfcSBarry Smith   } else {
11288b83055fSJed Brown     PetscStackCallBLAS("BLASgemv",BLASgemv_("N",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DZero,y,&_One));
11299566063dSJacob Faibussowitsch     PetscCall(PetscLogFlops(2.0*A->rmap->n*A->cmap->n - A->rmap->n));
11305ac36cfcSBarry Smith   }
11319566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx,&x));
11329566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(yy,&y));
11333a40ed3dSBarry Smith   PetscFunctionReturn(0);
1134289bc588SBarry Smith }
11356ee01492SSatish Balay 
1136ca15aa20SStefano Zampini PetscErrorCode MatMultAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy)
1137289bc588SBarry Smith {
1138c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
1139d9ca1df4SBarry Smith   const PetscScalar *v = mat->v,*x;
1140d9ca1df4SBarry Smith   PetscScalar       *y,_DOne=1.0;
11410805154bSBarry Smith   PetscBLASInt      m, n, _One=1;
11423a40ed3dSBarry Smith 
11433a40ed3dSBarry Smith   PetscFunctionBegin;
11449566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(A->rmap->n,&m));
11459566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(A->cmap->n,&n));
11469566063dSJacob Faibussowitsch   PetscCall(VecCopy(zz,yy));
1147d0f46423SBarry Smith   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
11489566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx,&x));
11499566063dSJacob Faibussowitsch   PetscCall(VecGetArray(yy,&y));
11508b83055fSJed Brown   PetscStackCallBLAS("BLASgemv",BLASgemv_("N",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DOne,y,&_One));
11519566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx,&x));
11529566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(yy,&y));
11539566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(2.0*A->rmap->n*A->cmap->n));
11543a40ed3dSBarry Smith   PetscFunctionReturn(0);
1155289bc588SBarry Smith }
11566ee01492SSatish Balay 
1157ca15aa20SStefano Zampini PetscErrorCode MatMultTransposeAdd_SeqDense(Mat A,Vec xx,Vec zz,Vec yy)
1158289bc588SBarry Smith {
1159c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
1160d9ca1df4SBarry Smith   const PetscScalar *v = mat->v,*x;
1161d9ca1df4SBarry Smith   PetscScalar       *y;
11620805154bSBarry Smith   PetscBLASInt      m, n, _One=1;
116387828ca2SBarry Smith   PetscScalar       _DOne=1.0;
11643a40ed3dSBarry Smith 
11653a40ed3dSBarry Smith   PetscFunctionBegin;
11669566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(A->rmap->n,&m));
11679566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(A->cmap->n,&n));
11689566063dSJacob Faibussowitsch   PetscCall(VecCopy(zz,yy));
1169d0f46423SBarry Smith   if (!A->rmap->n || !A->cmap->n) PetscFunctionReturn(0);
11709566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx,&x));
11719566063dSJacob Faibussowitsch   PetscCall(VecGetArray(yy,&y));
11728b83055fSJed Brown   PetscStackCallBLAS("BLASgemv",BLASgemv_("T",&m,&n,&_DOne,v,&(mat->lda),x,&_One,&_DOne,y,&_One));
11739566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx,&x));
11749566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(yy,&y));
11759566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(2.0*A->rmap->n*A->cmap->n));
11763a40ed3dSBarry Smith   PetscFunctionReturn(0);
1177289bc588SBarry Smith }
1178289bc588SBarry Smith 
1179289bc588SBarry Smith /* -----------------------------------------------------------------*/
1180e0877f53SBarry Smith static PetscErrorCode MatGetRow_SeqDense(Mat A,PetscInt row,PetscInt *ncols,PetscInt **cols,PetscScalar **vals)
1181289bc588SBarry Smith {
1182c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
118313f74950SBarry Smith   PetscInt       i;
118467e560aaSBarry Smith 
11853a40ed3dSBarry Smith   PetscFunctionBegin;
1186d0f46423SBarry Smith   *ncols = A->cmap->n;
1187289bc588SBarry Smith   if (cols) {
11889566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(A->cmap->n,cols));
1189d0f46423SBarry Smith     for (i=0; i<A->cmap->n; i++) (*cols)[i] = i;
1190289bc588SBarry Smith   }
1191289bc588SBarry Smith   if (vals) {
1192ca15aa20SStefano Zampini     const PetscScalar *v;
1193ca15aa20SStefano Zampini 
11949566063dSJacob Faibussowitsch     PetscCall(MatDenseGetArrayRead(A,&v));
11959566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(A->cmap->n,vals));
1196ca15aa20SStefano Zampini     v   += row;
1197d0f46423SBarry Smith     for (i=0; i<A->cmap->n; i++) {(*vals)[i] = *v; v += mat->lda;}
11989566063dSJacob Faibussowitsch     PetscCall(MatDenseRestoreArrayRead(A,&v));
1199289bc588SBarry Smith   }
12003a40ed3dSBarry Smith   PetscFunctionReturn(0);
1201289bc588SBarry Smith }
12026ee01492SSatish Balay 
1203e0877f53SBarry Smith static PetscErrorCode MatRestoreRow_SeqDense(Mat A,PetscInt row,PetscInt *ncols,PetscInt **cols,PetscScalar **vals)
1204289bc588SBarry Smith {
1205606d414cSSatish Balay   PetscFunctionBegin;
1206cb4a9cd9SHong Zhang   if (ncols) *ncols = 0;
12079566063dSJacob Faibussowitsch   if (cols) PetscCall(PetscFree(*cols));
12089566063dSJacob Faibussowitsch   if (vals) PetscCall(PetscFree(*vals));
12093a40ed3dSBarry Smith   PetscFunctionReturn(0);
1210289bc588SBarry Smith }
1211289bc588SBarry Smith /* ----------------------------------------------------------------*/
1212e0877f53SBarry Smith static PetscErrorCode MatSetValues_SeqDense(Mat A,PetscInt m,const PetscInt indexm[],PetscInt n,const PetscInt indexn[],const PetscScalar v[],InsertMode addv)
1213289bc588SBarry Smith {
1214c0bbcb79SLois Curfman McInnes   Mat_SeqDense     *mat = (Mat_SeqDense*)A->data;
1215ca15aa20SStefano Zampini   PetscScalar      *av;
121613f74950SBarry Smith   PetscInt         i,j,idx=0;
1217ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1218c70f7ee4SJunchao Zhang   PetscOffloadMask oldf;
1219ca15aa20SStefano Zampini #endif
1220d6dfbf8fSBarry Smith 
12213a40ed3dSBarry Smith   PetscFunctionBegin;
12229566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(A,&av));
1223289bc588SBarry Smith   if (!mat->roworiented) {
1224dbb450caSBarry Smith     if (addv == INSERT_VALUES) {
1225289bc588SBarry Smith       for (j=0; j<n; j++) {
1226cddbea37SSatish Balay         if (indexn[j] < 0) {idx += m; continue;}
12276bdcaf15SBarry Smith         PetscCheck(indexn[j] < A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,indexn[j],A->cmap->n-1);
1228289bc588SBarry Smith         for (i=0; i<m; i++) {
1229cddbea37SSatish Balay           if (indexm[i] < 0) {idx++; continue;}
12306bdcaf15SBarry Smith           PetscCheck(indexm[i] < A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,indexm[i],A->rmap->n-1);
1231ca15aa20SStefano Zampini           av[indexn[j]*mat->lda + indexm[i]] = v[idx++];
1232289bc588SBarry Smith         }
1233289bc588SBarry Smith       }
12343a40ed3dSBarry Smith     } else {
1235289bc588SBarry Smith       for (j=0; j<n; j++) {
1236cddbea37SSatish Balay         if (indexn[j] < 0) {idx += m; continue;}
12376bdcaf15SBarry Smith         PetscCheck(indexn[j] < A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,indexn[j],A->cmap->n-1);
1238289bc588SBarry Smith         for (i=0; i<m; i++) {
1239cddbea37SSatish Balay           if (indexm[i] < 0) {idx++; continue;}
12406bdcaf15SBarry Smith           PetscCheck(indexm[i] < A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,indexm[i],A->rmap->n-1);
1241ca15aa20SStefano Zampini           av[indexn[j]*mat->lda + indexm[i]] += v[idx++];
1242289bc588SBarry Smith         }
1243289bc588SBarry Smith       }
1244289bc588SBarry Smith     }
12453a40ed3dSBarry Smith   } else {
1246dbb450caSBarry Smith     if (addv == INSERT_VALUES) {
1247e8d4e0b9SBarry Smith       for (i=0; i<m; i++) {
1248cddbea37SSatish Balay         if (indexm[i] < 0) { idx += n; continue;}
12496bdcaf15SBarry Smith         PetscCheck(indexm[i] < A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,indexm[i],A->rmap->n-1);
1250e8d4e0b9SBarry Smith         for (j=0; j<n; j++) {
1251cddbea37SSatish Balay           if (indexn[j] < 0) { idx++; continue;}
12526bdcaf15SBarry Smith           PetscCheck(indexn[j] < A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,indexn[j],A->cmap->n-1);
1253ca15aa20SStefano Zampini           av[indexn[j]*mat->lda + indexm[i]] = v[idx++];
1254e8d4e0b9SBarry Smith         }
1255e8d4e0b9SBarry Smith       }
12563a40ed3dSBarry Smith     } else {
1257289bc588SBarry Smith       for (i=0; i<m; i++) {
1258cddbea37SSatish Balay         if (indexm[i] < 0) { idx += n; continue;}
12596bdcaf15SBarry Smith         PetscCheck(indexm[i] < A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,indexm[i],A->rmap->n-1);
1260289bc588SBarry Smith         for (j=0; j<n; j++) {
1261cddbea37SSatish Balay           if (indexn[j] < 0) { idx++; continue;}
12626bdcaf15SBarry Smith           PetscCheck(indexn[j] < A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,indexn[j],A->cmap->n-1);
1263ca15aa20SStefano Zampini           av[indexn[j]*mat->lda + indexm[i]] += v[idx++];
1264289bc588SBarry Smith         }
1265289bc588SBarry Smith       }
1266289bc588SBarry Smith     }
1267e8d4e0b9SBarry Smith   }
1268ca15aa20SStefano Zampini   /* hack to prevent unneeded copy to the GPU while returning the array */
1269ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1270c70f7ee4SJunchao Zhang   oldf = A->offloadmask;
1271c70f7ee4SJunchao Zhang   A->offloadmask = PETSC_OFFLOAD_GPU;
1272ca15aa20SStefano Zampini #endif
12739566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(A,&av));
1274ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1275c70f7ee4SJunchao Zhang   A->offloadmask = (oldf == PETSC_OFFLOAD_UNALLOCATED ? PETSC_OFFLOAD_UNALLOCATED : PETSC_OFFLOAD_CPU);
1276ca15aa20SStefano Zampini #endif
12773a40ed3dSBarry Smith   PetscFunctionReturn(0);
1278289bc588SBarry Smith }
1279e8d4e0b9SBarry Smith 
1280e0877f53SBarry Smith static PetscErrorCode MatGetValues_SeqDense(Mat A,PetscInt m,const PetscInt indexm[],PetscInt n,const PetscInt indexn[],PetscScalar v[])
1281ae80bb75SLois Curfman McInnes {
1282ae80bb75SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
1283ca15aa20SStefano Zampini   const PetscScalar *vv;
128413f74950SBarry Smith   PetscInt          i,j;
1285ae80bb75SLois Curfman McInnes 
12863a40ed3dSBarry Smith   PetscFunctionBegin;
12879566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A,&vv));
1288ae80bb75SLois Curfman McInnes   /* row-oriented output */
1289ae80bb75SLois Curfman McInnes   for (i=0; i<m; i++) {
129097e567efSBarry Smith     if (indexm[i] < 0) {v += n;continue;}
12912c71b3e2SJacob Faibussowitsch     PetscCheckFalse(indexm[i] >= A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %" PetscInt_FMT " requested larger than number rows %" PetscInt_FMT,indexm[i],A->rmap->n);
1292ae80bb75SLois Curfman McInnes     for (j=0; j<n; j++) {
12936f31f424SBarry Smith       if (indexn[j] < 0) {v++; continue;}
12942c71b3e2SJacob Faibussowitsch       PetscCheckFalse(indexn[j] >= A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column %" PetscInt_FMT " requested larger than number columns %" PetscInt_FMT,indexn[j],A->cmap->n);
1295ca15aa20SStefano Zampini       *v++ = vv[indexn[j]*mat->lda + indexm[i]];
1296ae80bb75SLois Curfman McInnes     }
1297ae80bb75SLois Curfman McInnes   }
12989566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A,&vv));
12993a40ed3dSBarry Smith   PetscFunctionReturn(0);
1300ae80bb75SLois Curfman McInnes }
1301ae80bb75SLois Curfman McInnes 
1302289bc588SBarry Smith /* -----------------------------------------------------------------*/
1303289bc588SBarry Smith 
13048491ab44SLisandro Dalcin PetscErrorCode MatView_Dense_Binary(Mat mat,PetscViewer viewer)
1305aabbc4fbSShri Abhyankar {
13068491ab44SLisandro Dalcin   PetscBool         skipHeader;
13078491ab44SLisandro Dalcin   PetscViewerFormat format;
13088491ab44SLisandro Dalcin   PetscInt          header[4],M,N,m,lda,i,j,k;
13098491ab44SLisandro Dalcin   const PetscScalar *v;
13108491ab44SLisandro Dalcin   PetscScalar       *vwork;
1311aabbc4fbSShri Abhyankar 
1312aabbc4fbSShri Abhyankar   PetscFunctionBegin;
13139566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
13149566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryGetSkipHeader(viewer,&skipHeader));
13159566063dSJacob Faibussowitsch   PetscCall(PetscViewerGetFormat(viewer,&format));
13168491ab44SLisandro Dalcin   if (skipHeader) format = PETSC_VIEWER_NATIVE;
1317aabbc4fbSShri Abhyankar 
13189566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat,&M,&N));
13198491ab44SLisandro Dalcin 
13208491ab44SLisandro Dalcin   /* write matrix header */
13218491ab44SLisandro Dalcin   header[0] = MAT_FILE_CLASSID; header[1] = M; header[2] = N;
13228491ab44SLisandro Dalcin   header[3] = (format == PETSC_VIEWER_NATIVE) ? MATRIX_BINARY_FORMAT_DENSE : M*N;
13239566063dSJacob Faibussowitsch   if (!skipHeader) PetscCall(PetscViewerBinaryWrite(viewer,header,4,PETSC_INT));
13248491ab44SLisandro Dalcin 
13259566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat,&m,NULL));
13268491ab44SLisandro Dalcin   if (format != PETSC_VIEWER_NATIVE) {
13278491ab44SLisandro Dalcin     PetscInt nnz = m*N, *iwork;
13288491ab44SLisandro Dalcin     /* store row lengths for each row */
13299566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nnz,&iwork));
13308491ab44SLisandro Dalcin     for (i=0; i<m; i++) iwork[i] = N;
13319566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryWriteAll(viewer,iwork,m,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT));
13328491ab44SLisandro Dalcin     /* store column indices (zero start index) */
13338491ab44SLisandro Dalcin     for (k=0, i=0; i<m; i++)
13348491ab44SLisandro Dalcin       for (j=0; j<N; j++, k++)
13358491ab44SLisandro Dalcin         iwork[k] = j;
13369566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryWriteAll(viewer,iwork,nnz,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT));
13379566063dSJacob Faibussowitsch     PetscCall(PetscFree(iwork));
13388491ab44SLisandro Dalcin   }
13398491ab44SLisandro Dalcin   /* store matrix values as a dense matrix in row major order */
13409566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m*N,&vwork));
13419566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(mat,&v));
13429566063dSJacob Faibussowitsch   PetscCall(MatDenseGetLDA(mat,&lda));
13438491ab44SLisandro Dalcin   for (k=0, i=0; i<m; i++)
13448491ab44SLisandro Dalcin     for (j=0; j<N; j++, k++)
13458491ab44SLisandro Dalcin       vwork[k] = v[i+lda*j];
13469566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(mat,&v));
13479566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer,vwork,m*N,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_SCALAR));
13489566063dSJacob Faibussowitsch   PetscCall(PetscFree(vwork));
13498491ab44SLisandro Dalcin   PetscFunctionReturn(0);
13508491ab44SLisandro Dalcin }
13518491ab44SLisandro Dalcin 
13528491ab44SLisandro Dalcin PetscErrorCode MatLoad_Dense_Binary(Mat mat,PetscViewer viewer)
13538491ab44SLisandro Dalcin {
13548491ab44SLisandro Dalcin   PetscBool      skipHeader;
13558491ab44SLisandro Dalcin   PetscInt       header[4],M,N,m,nz,lda,i,j,k;
13568491ab44SLisandro Dalcin   PetscInt       rows,cols;
13578491ab44SLisandro Dalcin   PetscScalar    *v,*vwork;
13588491ab44SLisandro Dalcin 
13598491ab44SLisandro Dalcin   PetscFunctionBegin;
13609566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
13619566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryGetSkipHeader(viewer,&skipHeader));
13628491ab44SLisandro Dalcin 
13638491ab44SLisandro Dalcin   if (!skipHeader) {
13649566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryRead(viewer,header,4,NULL,PETSC_INT));
13652c71b3e2SJacob Faibussowitsch     PetscCheckFalse(header[0] != MAT_FILE_CLASSID,PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Not a matrix object in file");
13668491ab44SLisandro Dalcin     M = header[1]; N = header[2];
13672c71b3e2SJacob Faibussowitsch     PetscCheckFalse(M < 0,PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix row size (%" PetscInt_FMT ") in file is negative",M);
13682c71b3e2SJacob Faibussowitsch     PetscCheckFalse(N < 0,PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix column size (%" PetscInt_FMT ") in file is negative",N);
13698491ab44SLisandro Dalcin     nz = header[3];
13702c71b3e2SJacob Faibussowitsch     PetscCheckFalse(nz != MATRIX_BINARY_FORMAT_DENSE && nz < 0,PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Unknown matrix format %" PetscInt_FMT " in file",nz);
1371aabbc4fbSShri Abhyankar   } else {
13729566063dSJacob Faibussowitsch     PetscCall(MatGetSize(mat,&M,&N));
13732c71b3e2SJacob Faibussowitsch     PetscCheckFalse(M < 0 || N < 0,PETSC_COMM_SELF,PETSC_ERR_USER,"Matrix binary file header was skipped, thus the user must specify the global sizes of input matrix");
13748491ab44SLisandro Dalcin     nz = MATRIX_BINARY_FORMAT_DENSE;
1375e6324fbbSBarry Smith   }
1376aabbc4fbSShri Abhyankar 
13778491ab44SLisandro Dalcin   /* setup global sizes if not set */
13788491ab44SLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
13798491ab44SLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
13809566063dSJacob Faibussowitsch   PetscCall(MatSetUp(mat));
13818491ab44SLisandro Dalcin   /* check if global sizes are correct */
13829566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat,&rows,&cols));
13832c71b3e2SJacob Faibussowitsch   PetscCheckFalse(M != rows || N != cols,PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")",M,N,rows,cols);
1384aabbc4fbSShri Abhyankar 
13859566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat,NULL,&N));
13869566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat,&m,NULL));
13879566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(mat,&v));
13889566063dSJacob Faibussowitsch   PetscCall(MatDenseGetLDA(mat,&lda));
13898491ab44SLisandro Dalcin   if (nz == MATRIX_BINARY_FORMAT_DENSE) {  /* matrix in file is dense format */
13908491ab44SLisandro Dalcin     PetscInt nnz = m*N;
13918491ab44SLisandro Dalcin     /* read in matrix values */
13929566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nnz,&vwork));
13939566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryReadAll(viewer,vwork,nnz,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_SCALAR));
13948491ab44SLisandro Dalcin     /* store values in column major order */
13958491ab44SLisandro Dalcin     for (j=0; j<N; j++)
13968491ab44SLisandro Dalcin       for (i=0; i<m; i++)
13978491ab44SLisandro Dalcin         v[i+lda*j] = vwork[i*N+j];
13989566063dSJacob Faibussowitsch     PetscCall(PetscFree(vwork));
13998491ab44SLisandro Dalcin   } else { /* matrix in file is sparse format */
14008491ab44SLisandro Dalcin     PetscInt nnz = 0, *rlens, *icols;
14018491ab44SLisandro Dalcin     /* read in row lengths */
14029566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(m,&rlens));
14039566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryReadAll(viewer,rlens,m,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT));
14048491ab44SLisandro Dalcin     for (i=0; i<m; i++) nnz += rlens[i];
14058491ab44SLisandro Dalcin     /* read in column indices and values */
14069566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(nnz,&icols,nnz,&vwork));
14079566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryReadAll(viewer,icols,nnz,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT));
14089566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryReadAll(viewer,vwork,nnz,PETSC_DETERMINE,PETSC_DETERMINE,PETSC_SCALAR));
14098491ab44SLisandro Dalcin     /* store values in column major order */
14108491ab44SLisandro Dalcin     for (k=0, i=0; i<m; i++)
14118491ab44SLisandro Dalcin       for (j=0; j<rlens[i]; j++, k++)
14128491ab44SLisandro Dalcin         v[i+lda*icols[k]] = vwork[k];
14139566063dSJacob Faibussowitsch     PetscCall(PetscFree(rlens));
14149566063dSJacob Faibussowitsch     PetscCall(PetscFree2(icols,vwork));
1415aabbc4fbSShri Abhyankar   }
14169566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(mat,&v));
14179566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat,MAT_FINAL_ASSEMBLY));
14189566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat,MAT_FINAL_ASSEMBLY));
1419aabbc4fbSShri Abhyankar   PetscFunctionReturn(0);
1420aabbc4fbSShri Abhyankar }
1421aabbc4fbSShri Abhyankar 
1422eb91f321SVaclav Hapla PetscErrorCode MatLoad_SeqDense(Mat newMat, PetscViewer viewer)
1423eb91f321SVaclav Hapla {
1424eb91f321SVaclav Hapla   PetscBool      isbinary, ishdf5;
1425eb91f321SVaclav Hapla 
1426eb91f321SVaclav Hapla   PetscFunctionBegin;
1427eb91f321SVaclav Hapla   PetscValidHeaderSpecific(newMat,MAT_CLASSID,1);
1428eb91f321SVaclav Hapla   PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2);
1429eb91f321SVaclav Hapla   /* force binary viewer to load .info file if it has not yet done so */
14309566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
14319566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary));
14329566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5,  &ishdf5));
1433eb91f321SVaclav Hapla   if (isbinary) {
14349566063dSJacob Faibussowitsch     PetscCall(MatLoad_Dense_Binary(newMat,viewer));
1435eb91f321SVaclav Hapla   } else if (ishdf5) {
1436eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5)
14379566063dSJacob Faibussowitsch     PetscCall(MatLoad_Dense_HDF5(newMat,viewer));
1438eb91f321SVaclav Hapla #else
1439eb91f321SVaclav Hapla     SETERRQ(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5");
1440eb91f321SVaclav Hapla #endif
1441eb91f321SVaclav Hapla   } else {
144298921bdaSJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newMat)->type_name);
1443eb91f321SVaclav Hapla   }
1444eb91f321SVaclav Hapla   PetscFunctionReturn(0);
1445eb91f321SVaclav Hapla }
1446eb91f321SVaclav Hapla 
14476849ba73SBarry Smith static PetscErrorCode MatView_SeqDense_ASCII(Mat A,PetscViewer viewer)
1448289bc588SBarry Smith {
1449932b0c3eSLois Curfman McInnes   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
145013f74950SBarry Smith   PetscInt          i,j;
14512dcb1b2aSMatthew Knepley   const char        *name;
1452ca15aa20SStefano Zampini   PetscScalar       *v,*av;
1453f3ef73ceSBarry Smith   PetscViewerFormat format;
14545f481a85SSatish Balay #if defined(PETSC_USE_COMPLEX)
1455ace3abfcSBarry Smith   PetscBool         allreal = PETSC_TRUE;
14565f481a85SSatish Balay #endif
1457932b0c3eSLois Curfman McInnes 
14583a40ed3dSBarry Smith   PetscFunctionBegin;
14599566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A,(const PetscScalar**)&av));
14609566063dSJacob Faibussowitsch   PetscCall(PetscViewerGetFormat(viewer,&format));
1461456192e2SBarry Smith   if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
14623a40ed3dSBarry Smith     PetscFunctionReturn(0);  /* do nothing for now */
1463fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_COMMON) {
14649566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer,PETSC_FALSE));
1465d0f46423SBarry Smith     for (i=0; i<A->rmap->n; i++) {
1466ca15aa20SStefano Zampini       v    = av + i;
14679566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer,"row %" PetscInt_FMT ":",i));
1468d0f46423SBarry Smith       for (j=0; j<A->cmap->n; j++) {
1469aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
1470329f5518SBarry Smith         if (PetscRealPart(*v) != 0.0 && PetscImaginaryPart(*v) != 0.0) {
14719566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g + %g i) ",j,(double)PetscRealPart(*v),(double)PetscImaginaryPart(*v)));
1472329f5518SBarry Smith         } else if (PetscRealPart(*v)) {
14739566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",j,(double)PetscRealPart(*v)));
14746831982aSBarry Smith         }
147580cd9d93SLois Curfman McInnes #else
14766831982aSBarry Smith         if (*v) {
14779566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",j,(double)*v));
14786831982aSBarry Smith         }
147980cd9d93SLois Curfman McInnes #endif
14801b807ce4Svictorle         v += a->lda;
148180cd9d93SLois Curfman McInnes       }
14829566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer,"\n"));
148380cd9d93SLois Curfman McInnes     }
14849566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer,PETSC_TRUE));
14853a40ed3dSBarry Smith   } else {
14869566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer,PETSC_FALSE));
1487aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
148847989497SBarry Smith     /* determine if matrix has all real values */
1489*bcd8d3a4SJose E. Roman     for (j=0; j<A->cmap->n; j++) {
1490*bcd8d3a4SJose E. Roman       v = av + j*a->lda;
1491*bcd8d3a4SJose E. Roman       for (i=0; i<A->rmap->n; i++) {
1492ffac6cdbSBarry Smith         if (PetscImaginaryPart(v[i])) { allreal = PETSC_FALSE; break;}
149347989497SBarry Smith       }
1494*bcd8d3a4SJose E. Roman     }
149547989497SBarry Smith #endif
1496fb9695e5SSatish Balay     if (format == PETSC_VIEWER_ASCII_MATLAB) {
14979566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetName((PetscObject)A,&name));
14989566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer,"%% Size = %" PetscInt_FMT " %" PetscInt_FMT " \n",A->rmap->n,A->cmap->n));
14999566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer,"%s = zeros(%" PetscInt_FMT ",%" PetscInt_FMT ");\n",name,A->rmap->n,A->cmap->n));
15009566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer,"%s = [\n",name));
1501ffac6cdbSBarry Smith     }
1502ffac6cdbSBarry Smith 
1503d0f46423SBarry Smith     for (i=0; i<A->rmap->n; i++) {
1504ca15aa20SStefano Zampini       v = av + i;
1505d0f46423SBarry Smith       for (j=0; j<A->cmap->n; j++) {
1506aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
150747989497SBarry Smith         if (allreal) {
15089566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(viewer,"%18.16e ",(double)PetscRealPart(*v)));
150947989497SBarry Smith         } else {
15109566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(viewer,"%18.16e + %18.16ei ",(double)PetscRealPart(*v),(double)PetscImaginaryPart(*v)));
151147989497SBarry Smith         }
1512289bc588SBarry Smith #else
15139566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer,"%18.16e ",(double)*v));
1514289bc588SBarry Smith #endif
15151b807ce4Svictorle         v += a->lda;
1516289bc588SBarry Smith       }
15179566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer,"\n"));
1518289bc588SBarry Smith     }
1519fb9695e5SSatish Balay     if (format == PETSC_VIEWER_ASCII_MATLAB) {
15209566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer,"];\n"));
1521ffac6cdbSBarry Smith     }
15229566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer,PETSC_TRUE));
1523da3a660dSBarry Smith   }
15249566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A,(const PetscScalar**)&av));
15259566063dSJacob Faibussowitsch   PetscCall(PetscViewerFlush(viewer));
15263a40ed3dSBarry Smith   PetscFunctionReturn(0);
1527289bc588SBarry Smith }
1528289bc588SBarry Smith 
15299804daf3SBarry Smith #include <petscdraw.h>
1530e0877f53SBarry Smith static PetscErrorCode MatView_SeqDense_Draw_Zoom(PetscDraw draw,void *Aa)
1531f1af5d2fSBarry Smith {
1532f1af5d2fSBarry Smith   Mat               A  = (Mat) Aa;
1533383922c3SLisandro Dalcin   PetscInt          m  = A->rmap->n,n = A->cmap->n,i,j;
1534383922c3SLisandro Dalcin   int               color = PETSC_DRAW_WHITE;
1535ca15aa20SStefano Zampini   const PetscScalar *v;
1536b0a32e0cSBarry Smith   PetscViewer       viewer;
1537b05fc000SLisandro Dalcin   PetscReal         xl,yl,xr,yr,x_l,x_r,y_l,y_r;
1538f3ef73ceSBarry Smith   PetscViewerFormat format;
15395f80ce2aSJacob Faibussowitsch   PetscErrorCode    ierr;
1540f1af5d2fSBarry Smith 
1541f1af5d2fSBarry Smith   PetscFunctionBegin;
15429566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer));
15439566063dSJacob Faibussowitsch   PetscCall(PetscViewerGetFormat(viewer,&format));
15449566063dSJacob Faibussowitsch   PetscCall(PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr));
1545f1af5d2fSBarry Smith 
1546f1af5d2fSBarry Smith   /* Loop over matrix elements drawing boxes */
15479566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A,&v));
1548fb9695e5SSatish Balay   if (format != PETSC_VIEWER_DRAW_CONTOUR) {
15499566063dSJacob Faibussowitsch     ierr = PetscDrawCollectiveBegin(draw);PetscCall(ierr);
1550f1af5d2fSBarry Smith     /* Blue for negative and Red for positive */
1551f1af5d2fSBarry Smith     for (j = 0; j < n; j++) {
1552383922c3SLisandro Dalcin       x_l = j; x_r = x_l + 1.0;
1553f1af5d2fSBarry Smith       for (i = 0; i < m; i++) {
1554f1af5d2fSBarry Smith         y_l = m - i - 1.0;
1555f1af5d2fSBarry Smith         y_r = y_l + 1.0;
1556ca15aa20SStefano Zampini         if (PetscRealPart(v[j*m+i]) >  0.) color = PETSC_DRAW_RED;
1557ca15aa20SStefano Zampini         else if (PetscRealPart(v[j*m+i]) <  0.) color = PETSC_DRAW_BLUE;
1558ca15aa20SStefano Zampini         else continue;
15599566063dSJacob Faibussowitsch         PetscCall(PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color));
1560f1af5d2fSBarry Smith       }
1561f1af5d2fSBarry Smith     }
15629566063dSJacob Faibussowitsch     ierr = PetscDrawCollectiveEnd(draw);PetscCall(ierr);
1563f1af5d2fSBarry Smith   } else {
1564f1af5d2fSBarry Smith     /* use contour shading to indicate magnitude of values */
1565f1af5d2fSBarry Smith     /* first determine max of all nonzero values */
1566b05fc000SLisandro Dalcin     PetscReal minv = 0.0, maxv = 0.0;
1567b05fc000SLisandro Dalcin     PetscDraw popup;
1568b05fc000SLisandro Dalcin 
1569f1af5d2fSBarry Smith     for (i=0; i < m*n; i++) {
1570f1af5d2fSBarry Smith       if (PetscAbsScalar(v[i]) > maxv) maxv = PetscAbsScalar(v[i]);
1571f1af5d2fSBarry Smith     }
1572383922c3SLisandro Dalcin     if (minv >= maxv) maxv = minv + PETSC_SMALL;
15739566063dSJacob Faibussowitsch     PetscCall(PetscDrawGetPopup(draw,&popup));
15749566063dSJacob Faibussowitsch     PetscCall(PetscDrawScalePopup(popup,minv,maxv));
1575383922c3SLisandro Dalcin 
15769566063dSJacob Faibussowitsch     ierr = PetscDrawCollectiveBegin(draw);PetscCall(ierr);
1577f1af5d2fSBarry Smith     for (j=0; j<n; j++) {
1578f1af5d2fSBarry Smith       x_l = j;
1579f1af5d2fSBarry Smith       x_r = x_l + 1.0;
1580f1af5d2fSBarry Smith       for (i=0; i<m; i++) {
1581f1af5d2fSBarry Smith         y_l   = m - i - 1.0;
1582f1af5d2fSBarry Smith         y_r   = y_l + 1.0;
1583b05fc000SLisandro Dalcin         color = PetscDrawRealToColor(PetscAbsScalar(v[j*m+i]),minv,maxv);
15849566063dSJacob Faibussowitsch         PetscCall(PetscDrawRectangle(draw,x_l,y_l,x_r,y_r,color,color,color,color));
1585f1af5d2fSBarry Smith       }
1586f1af5d2fSBarry Smith     }
15879566063dSJacob Faibussowitsch     ierr = PetscDrawCollectiveEnd(draw);PetscCall(ierr);
1588f1af5d2fSBarry Smith   }
15899566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A,&v));
1590f1af5d2fSBarry Smith   PetscFunctionReturn(0);
1591f1af5d2fSBarry Smith }
1592f1af5d2fSBarry Smith 
1593e0877f53SBarry Smith static PetscErrorCode MatView_SeqDense_Draw(Mat A,PetscViewer viewer)
1594f1af5d2fSBarry Smith {
1595b0a32e0cSBarry Smith   PetscDraw      draw;
1596ace3abfcSBarry Smith   PetscBool      isnull;
1597329f5518SBarry Smith   PetscReal      xr,yr,xl,yl,h,w;
1598f1af5d2fSBarry Smith 
1599f1af5d2fSBarry Smith   PetscFunctionBegin;
16009566063dSJacob Faibussowitsch   PetscCall(PetscViewerDrawGetDraw(viewer,0,&draw));
16019566063dSJacob Faibussowitsch   PetscCall(PetscDrawIsNull(draw,&isnull));
1602abc0a331SBarry Smith   if (isnull) PetscFunctionReturn(0);
1603f1af5d2fSBarry Smith 
1604d0f46423SBarry Smith   xr   = A->cmap->n; yr = A->rmap->n; h = yr/10.0; w = xr/10.0;
1605f1af5d2fSBarry Smith   xr  += w;          yr += h;        xl = -w;     yl = -h;
16069566063dSJacob Faibussowitsch   PetscCall(PetscDrawSetCoordinates(draw,xl,yl,xr,yr));
16079566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer));
16089566063dSJacob Faibussowitsch   PetscCall(PetscDrawZoom(draw,MatView_SeqDense_Draw_Zoom,A));
16099566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)A,"Zoomviewer",NULL));
16109566063dSJacob Faibussowitsch   PetscCall(PetscDrawSave(draw));
1611f1af5d2fSBarry Smith   PetscFunctionReturn(0);
1612f1af5d2fSBarry Smith }
1613f1af5d2fSBarry Smith 
1614dfbe8321SBarry Smith PetscErrorCode MatView_SeqDense(Mat A,PetscViewer viewer)
1615932b0c3eSLois Curfman McInnes {
1616ace3abfcSBarry Smith   PetscBool      iascii,isbinary,isdraw;
1617932b0c3eSLois Curfman McInnes 
16183a40ed3dSBarry Smith   PetscFunctionBegin;
16199566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii));
16209566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary));
16219566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw));
1622c45a1595SBarry Smith   if (iascii) {
16239566063dSJacob Faibussowitsch     PetscCall(MatView_SeqDense_ASCII(A,viewer));
16240f5bd95cSBarry Smith   } else if (isbinary) {
16259566063dSJacob Faibussowitsch     PetscCall(MatView_Dense_Binary(A,viewer));
1626f1af5d2fSBarry Smith   } else if (isdraw) {
16279566063dSJacob Faibussowitsch     PetscCall(MatView_SeqDense_Draw(A,viewer));
1628932b0c3eSLois Curfman McInnes   }
16293a40ed3dSBarry Smith   PetscFunctionReturn(0);
1630932b0c3eSLois Curfman McInnes }
1631289bc588SBarry Smith 
1632637a0070SStefano Zampini static PetscErrorCode MatDensePlaceArray_SeqDense(Mat A,const PetscScalar *array)
1633d3042a70SBarry Smith {
1634d3042a70SBarry Smith   Mat_SeqDense *a = (Mat_SeqDense*)A->data;
1635d3042a70SBarry Smith 
1636d3042a70SBarry Smith   PetscFunctionBegin;
163728b400f6SJacob Faibussowitsch   PetscCheck(!a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
163828b400f6SJacob Faibussowitsch   PetscCheck(!a->matinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
163928b400f6SJacob Faibussowitsch   PetscCheck(!a->unplacedarray,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreArray() first");
1640d3042a70SBarry Smith   a->unplacedarray       = a->v;
1641d3042a70SBarry Smith   a->unplaced_user_alloc = a->user_alloc;
1642d3042a70SBarry Smith   a->v                   = (PetscScalar*) array;
1643637a0070SStefano Zampini   a->user_alloc          = PETSC_TRUE;
1644ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1645c70f7ee4SJunchao Zhang   A->offloadmask = PETSC_OFFLOAD_CPU;
1646ca15aa20SStefano Zampini #endif
1647d3042a70SBarry Smith   PetscFunctionReturn(0);
1648d3042a70SBarry Smith }
1649d3042a70SBarry Smith 
1650d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_SeqDense(Mat A)
1651d3042a70SBarry Smith {
1652d3042a70SBarry Smith   Mat_SeqDense *a = (Mat_SeqDense*)A->data;
1653d3042a70SBarry Smith 
1654d3042a70SBarry Smith   PetscFunctionBegin;
165528b400f6SJacob Faibussowitsch   PetscCheck(!a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
165628b400f6SJacob Faibussowitsch   PetscCheck(!a->matinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
1657d3042a70SBarry Smith   a->v             = a->unplacedarray;
1658d3042a70SBarry Smith   a->user_alloc    = a->unplaced_user_alloc;
1659d3042a70SBarry Smith   a->unplacedarray = NULL;
1660ca15aa20SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1661c70f7ee4SJunchao Zhang   A->offloadmask = PETSC_OFFLOAD_CPU;
1662ca15aa20SStefano Zampini #endif
1663d3042a70SBarry Smith   PetscFunctionReturn(0);
1664d3042a70SBarry Smith }
1665d3042a70SBarry Smith 
1666d5ea218eSStefano Zampini static PetscErrorCode MatDenseReplaceArray_SeqDense(Mat A,const PetscScalar *array)
1667d5ea218eSStefano Zampini {
1668d5ea218eSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
1669d5ea218eSStefano Zampini 
1670d5ea218eSStefano Zampini   PetscFunctionBegin;
167128b400f6SJacob Faibussowitsch   PetscCheck(!a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
167228b400f6SJacob Faibussowitsch   PetscCheck(!a->matinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
16739566063dSJacob Faibussowitsch   if (!a->user_alloc) PetscCall(PetscFree(a->v));
1674d5ea218eSStefano Zampini   a->v           = (PetscScalar*) array;
1675d5ea218eSStefano Zampini   a->user_alloc  = PETSC_FALSE;
1676d5ea218eSStefano Zampini #if defined(PETSC_HAVE_CUDA)
1677d5ea218eSStefano Zampini   A->offloadmask = PETSC_OFFLOAD_CPU;
1678d5ea218eSStefano Zampini #endif
1679d5ea218eSStefano Zampini   PetscFunctionReturn(0);
1680d5ea218eSStefano Zampini }
1681d5ea218eSStefano Zampini 
1682ca15aa20SStefano Zampini PetscErrorCode MatDestroy_SeqDense(Mat mat)
1683289bc588SBarry Smith {
1684ec8511deSBarry Smith   Mat_SeqDense   *l = (Mat_SeqDense*)mat->data;
168590f02eecSBarry Smith 
16863a40ed3dSBarry Smith   PetscFunctionBegin;
1687aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1688c0aa6a63SJacob Faibussowitsch   PetscLogObjectState((PetscObject)mat,"Rows %" PetscInt_FMT " Cols %" PetscInt_FMT,mat->rmap->n,mat->cmap->n);
1689a5a9c739SBarry Smith #endif
16909566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&(l->qrrhs)));
16919566063dSJacob Faibussowitsch   PetscCall(PetscFree(l->tau));
16929566063dSJacob Faibussowitsch   PetscCall(PetscFree(l->pivots));
16939566063dSJacob Faibussowitsch   PetscCall(PetscFree(l->fwork));
16949566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&l->ptapwork));
16959566063dSJacob Faibussowitsch   if (!l->user_alloc) PetscCall(PetscFree(l->v));
16969566063dSJacob Faibussowitsch   if (!l->unplaced_user_alloc) PetscCall(PetscFree(l->unplacedarray));
169728b400f6SJacob Faibussowitsch   PetscCheck(!l->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
169828b400f6SJacob Faibussowitsch   PetscCheck(!l->matinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
16999566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&l->cvec));
17009566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&l->cmat));
17019566063dSJacob Faibussowitsch   PetscCall(PetscFree(mat->data));
1702dbd8c25aSHong Zhang 
17039566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)mat,NULL));
17049566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatQRFactor_C",NULL));
17059566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL));
17069566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",NULL));
17079566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL));
17089566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL));
17099566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL));
17109566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL));
17119566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",NULL));
17129566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL));
17139566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL));
17149566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",NULL));
17159566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",NULL));
17169566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_seqdense_seqaij_C",NULL));
17178baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
17189566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_seqdense_elemental_C",NULL));
17198baccfbdSHong Zhang #endif
1720d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
17219566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_seqdense_scalapack_C",NULL));
1722d24d4204SJose E. Roman #endif
17232bf066beSStefano Zampini #if defined(PETSC_HAVE_CUDA)
17249566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_seqdense_seqdensecuda_C",NULL));
17259566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqdensecuda_seqdensecuda_C",NULL));
17269566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqdensecuda_seqdense_C",NULL));
17272bf066beSStefano Zampini #endif
17289566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatSeqDenseSetPreallocation_C",NULL));
17299566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqaij_seqdense_C",NULL));
17309566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqdense_seqdense_C",NULL));
17319566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqbaij_seqdense_C",NULL));
17329566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_seqsbaij_seqdense_C",NULL));
173352c5f739Sprj- 
17349566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL));
17359566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL));
17369566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",NULL));
17379566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",NULL));
17389566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",NULL));
17399566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",NULL));
17409566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",NULL));
17419566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",NULL));
17429566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",NULL));
17439566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",NULL));
17443a40ed3dSBarry Smith   PetscFunctionReturn(0);
1745289bc588SBarry Smith }
1746289bc588SBarry Smith 
1747e0877f53SBarry Smith static PetscErrorCode MatTranspose_SeqDense(Mat A,MatReuse reuse,Mat *matout)
1748289bc588SBarry Smith {
1749c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
17506536e3caSStefano Zampini   PetscInt       k,j,m = A->rmap->n, M = mat->lda, n = A->cmap->n;
175187828ca2SBarry Smith   PetscScalar    *v,tmp;
175248b35521SBarry Smith 
17533a40ed3dSBarry Smith   PetscFunctionBegin;
17546536e3caSStefano Zampini   if (reuse == MAT_INPLACE_MATRIX) {
17556536e3caSStefano Zampini     if (m == n) { /* in place transpose */
17569566063dSJacob Faibussowitsch       PetscCall(MatDenseGetArray(A,&v));
1757d3e5ee88SLois Curfman McInnes       for (j=0; j<m; j++) {
1758289bc588SBarry Smith         for (k=0; k<j; k++) {
17591b807ce4Svictorle           tmp        = v[j + k*M];
17601b807ce4Svictorle           v[j + k*M] = v[k + j*M];
17611b807ce4Svictorle           v[k + j*M] = tmp;
1762289bc588SBarry Smith         }
1763289bc588SBarry Smith       }
17649566063dSJacob Faibussowitsch       PetscCall(MatDenseRestoreArray(A,&v));
17656536e3caSStefano Zampini     } else { /* reuse memory, temporary allocates new memory */
17666536e3caSStefano Zampini       PetscScalar *v2;
17676536e3caSStefano Zampini       PetscLayout tmplayout;
17686536e3caSStefano Zampini 
17699566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1((size_t)m*n,&v2));
17709566063dSJacob Faibussowitsch       PetscCall(MatDenseGetArray(A,&v));
17716536e3caSStefano Zampini       for (j=0; j<n; j++) {
17726536e3caSStefano Zampini         for (k=0; k<m; k++) v2[j + (size_t)k*n] = v[k + (size_t)j*M];
17736536e3caSStefano Zampini       }
17749566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(v,v2,(size_t)m*n));
17759566063dSJacob Faibussowitsch       PetscCall(PetscFree(v2));
17769566063dSJacob Faibussowitsch       PetscCall(MatDenseRestoreArray(A,&v));
17776536e3caSStefano Zampini       /* cleanup size dependent quantities */
17789566063dSJacob Faibussowitsch       PetscCall(VecDestroy(&mat->cvec));
17799566063dSJacob Faibussowitsch       PetscCall(MatDestroy(&mat->cmat));
17809566063dSJacob Faibussowitsch       PetscCall(PetscFree(mat->pivots));
17819566063dSJacob Faibussowitsch       PetscCall(PetscFree(mat->fwork));
17829566063dSJacob Faibussowitsch       PetscCall(MatDestroy(&mat->ptapwork));
17836536e3caSStefano Zampini       /* swap row/col layouts */
17846536e3caSStefano Zampini       mat->lda  = n;
17856536e3caSStefano Zampini       tmplayout = A->rmap;
17866536e3caSStefano Zampini       A->rmap   = A->cmap;
17876536e3caSStefano Zampini       A->cmap   = tmplayout;
17886536e3caSStefano Zampini     }
17893a40ed3dSBarry Smith   } else { /* out-of-place transpose */
1790d3e5ee88SLois Curfman McInnes     Mat          tmat;
1791ec8511deSBarry Smith     Mat_SeqDense *tmatd;
179287828ca2SBarry Smith     PetscScalar  *v2;
1793af36a384SStefano Zampini     PetscInt     M2;
1794ea709b57SSatish Balay 
17956536e3caSStefano Zampini     if (reuse == MAT_INITIAL_MATRIX) {
17969566063dSJacob Faibussowitsch       PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&tmat));
17979566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(tmat,A->cmap->n,A->rmap->n,A->cmap->n,A->rmap->n));
17989566063dSJacob Faibussowitsch       PetscCall(MatSetType(tmat,((PetscObject)A)->type_name));
17999566063dSJacob Faibussowitsch       PetscCall(MatSeqDenseSetPreallocation(tmat,NULL));
1800ca15aa20SStefano Zampini     } else tmat = *matout;
1801ca15aa20SStefano Zampini 
18029566063dSJacob Faibussowitsch     PetscCall(MatDenseGetArrayRead(A,(const PetscScalar**)&v));
18039566063dSJacob Faibussowitsch     PetscCall(MatDenseGetArray(tmat,&v2));
1804ec8511deSBarry Smith     tmatd = (Mat_SeqDense*)tmat->data;
1805ca15aa20SStefano Zampini     M2    = tmatd->lda;
1806d3e5ee88SLois Curfman McInnes     for (j=0; j<n; j++) {
1807af36a384SStefano Zampini       for (k=0; k<m; k++) v2[j + k*M2] = v[k + j*M];
1808d3e5ee88SLois Curfman McInnes     }
18099566063dSJacob Faibussowitsch     PetscCall(MatDenseRestoreArray(tmat,&v2));
18109566063dSJacob Faibussowitsch     PetscCall(MatDenseRestoreArrayRead(A,(const PetscScalar**)&v));
18119566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(tmat,MAT_FINAL_ASSEMBLY));
18129566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(tmat,MAT_FINAL_ASSEMBLY));
18136536e3caSStefano Zampini     *matout = tmat;
181448b35521SBarry Smith   }
18153a40ed3dSBarry Smith   PetscFunctionReturn(0);
1816289bc588SBarry Smith }
1817289bc588SBarry Smith 
1818e0877f53SBarry Smith static PetscErrorCode MatEqual_SeqDense(Mat A1,Mat A2,PetscBool  *flg)
1819289bc588SBarry Smith {
1820c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat1 = (Mat_SeqDense*)A1->data;
1821c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat2 = (Mat_SeqDense*)A2->data;
1822ca15aa20SStefano Zampini   PetscInt          i;
1823ca15aa20SStefano Zampini   const PetscScalar *v1,*v2;
18249ea5d5aeSSatish Balay 
18253a40ed3dSBarry Smith   PetscFunctionBegin;
1826d0f46423SBarry Smith   if (A1->rmap->n != A2->rmap->n) {*flg = PETSC_FALSE; PetscFunctionReturn(0);}
1827d0f46423SBarry Smith   if (A1->cmap->n != A2->cmap->n) {*flg = PETSC_FALSE; PetscFunctionReturn(0);}
18289566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A1,&v1));
18299566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A2,&v2));
1830ca15aa20SStefano Zampini   for (i=0; i<A1->cmap->n; i++) {
18319566063dSJacob Faibussowitsch     PetscCall(PetscArraycmp(v1,v2,A1->rmap->n,flg));
1832ca15aa20SStefano Zampini     if (*flg == PETSC_FALSE) PetscFunctionReturn(0);
1833ca15aa20SStefano Zampini     v1 += mat1->lda;
1834ca15aa20SStefano Zampini     v2 += mat2->lda;
18351b807ce4Svictorle   }
18369566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A1,&v1));
18379566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A2,&v2));
183877c4ece6SBarry Smith   *flg = PETSC_TRUE;
18393a40ed3dSBarry Smith   PetscFunctionReturn(0);
1840289bc588SBarry Smith }
1841289bc588SBarry Smith 
1842e0877f53SBarry Smith static PetscErrorCode MatGetDiagonal_SeqDense(Mat A,Vec v)
1843289bc588SBarry Smith {
1844c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
184513f74950SBarry Smith   PetscInt          i,n,len;
1846ca15aa20SStefano Zampini   PetscScalar       *x;
1847ca15aa20SStefano Zampini   const PetscScalar *vv;
184844cd7ae7SLois Curfman McInnes 
18493a40ed3dSBarry Smith   PetscFunctionBegin;
18509566063dSJacob Faibussowitsch   PetscCall(VecGetSize(v,&n));
18519566063dSJacob Faibussowitsch   PetscCall(VecGetArray(v,&x));
1852d0f46423SBarry Smith   len  = PetscMin(A->rmap->n,A->cmap->n);
18539566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A,&vv));
18542c71b3e2SJacob Faibussowitsch   PetscCheckFalse(n != A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec");
185544cd7ae7SLois Curfman McInnes   for (i=0; i<len; i++) {
1856ca15aa20SStefano Zampini     x[i] = vv[i*mat->lda + i];
1857289bc588SBarry Smith   }
18589566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A,&vv));
18599566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(v,&x));
18603a40ed3dSBarry Smith   PetscFunctionReturn(0);
1861289bc588SBarry Smith }
1862289bc588SBarry Smith 
1863e0877f53SBarry Smith static PetscErrorCode MatDiagonalScale_SeqDense(Mat A,Vec ll,Vec rr)
1864289bc588SBarry Smith {
1865c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
1866f1ceaac6SMatthew G. Knepley   const PetscScalar *l,*r;
1867ca15aa20SStefano Zampini   PetscScalar       x,*v,*vv;
1868d0f46423SBarry Smith   PetscInt          i,j,m = A->rmap->n,n = A->cmap->n;
186955659b69SBarry Smith 
18703a40ed3dSBarry Smith   PetscFunctionBegin;
18719566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(A,&vv));
187228988994SBarry Smith   if (ll) {
18739566063dSJacob Faibussowitsch     PetscCall(VecGetSize(ll,&m));
18749566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(ll,&l));
18752c71b3e2SJacob Faibussowitsch     PetscCheckFalse(m != A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vec wrong size");
1876da3a660dSBarry Smith     for (i=0; i<m; i++) {
1877da3a660dSBarry Smith       x = l[i];
1878ca15aa20SStefano Zampini       v = vv + i;
1879b43bac26SStefano Zampini       for (j=0; j<n; j++) { (*v) *= x; v+= mat->lda;}
1880da3a660dSBarry Smith     }
18819566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(ll,&l));
18829566063dSJacob Faibussowitsch     PetscCall(PetscLogFlops(1.0*n*m));
1883da3a660dSBarry Smith   }
188428988994SBarry Smith   if (rr) {
18859566063dSJacob Faibussowitsch     PetscCall(VecGetSize(rr,&n));
18869566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(rr,&r));
18872c71b3e2SJacob Faibussowitsch     PetscCheckFalse(n != A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec wrong size");
1888da3a660dSBarry Smith     for (i=0; i<n; i++) {
1889da3a660dSBarry Smith       x = r[i];
1890ca15aa20SStefano Zampini       v = vv + i*mat->lda;
18912205254eSKarl Rupp       for (j=0; j<m; j++) (*v++) *= x;
1892da3a660dSBarry Smith     }
18939566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(rr,&r));
18949566063dSJacob Faibussowitsch     PetscCall(PetscLogFlops(1.0*n*m));
1895da3a660dSBarry Smith   }
18969566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(A,&vv));
18973a40ed3dSBarry Smith   PetscFunctionReturn(0);
1898289bc588SBarry Smith }
1899289bc588SBarry Smith 
1900ca15aa20SStefano Zampini PetscErrorCode MatNorm_SeqDense(Mat A,NormType type,PetscReal *nrm)
1901289bc588SBarry Smith {
1902c0bbcb79SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)A->data;
1903ca15aa20SStefano Zampini   PetscScalar       *v,*vv;
1904329f5518SBarry Smith   PetscReal         sum = 0.0;
190575f6d85dSStefano Zampini   PetscInt          lda, m=A->rmap->n,i,j;
190655659b69SBarry Smith 
19073a40ed3dSBarry Smith   PetscFunctionBegin;
19089566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A,(const PetscScalar**)&vv));
19099566063dSJacob Faibussowitsch   PetscCall(MatDenseGetLDA(A,&lda));
1910ca15aa20SStefano Zampini   v    = vv;
1911289bc588SBarry Smith   if (type == NORM_FROBENIUS) {
1912a5ce6ee0Svictorle     if (lda>m) {
1913d0f46423SBarry Smith       for (j=0; j<A->cmap->n; j++) {
1914ca15aa20SStefano Zampini         v = vv+j*lda;
1915a5ce6ee0Svictorle         for (i=0; i<m; i++) {
1916a5ce6ee0Svictorle           sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
1917a5ce6ee0Svictorle         }
1918a5ce6ee0Svictorle       }
1919a5ce6ee0Svictorle     } else {
1920570b7f6dSBarry Smith #if defined(PETSC_USE_REAL___FP16)
1921570b7f6dSBarry Smith       PetscBLASInt one = 1,cnt = A->cmap->n*A->rmap->n;
192273cf7048SBarry Smith       PetscStackCallBLAS("BLASnrm2",*nrm = BLASnrm2_(&cnt,v,&one));
1923570b7f6dSBarry Smith     }
1924570b7f6dSBarry Smith #else
1925d0f46423SBarry Smith       for (i=0; i<A->cmap->n*A->rmap->n; i++) {
1926329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
1927289bc588SBarry Smith       }
1928a5ce6ee0Svictorle     }
19298f1a2a5eSBarry Smith     *nrm = PetscSqrtReal(sum);
1930570b7f6dSBarry Smith #endif
19319566063dSJacob Faibussowitsch     PetscCall(PetscLogFlops(2.0*A->cmap->n*A->rmap->n));
19323a40ed3dSBarry Smith   } else if (type == NORM_1) {
1933064f8208SBarry Smith     *nrm = 0.0;
1934d0f46423SBarry Smith     for (j=0; j<A->cmap->n; j++) {
1935ca15aa20SStefano Zampini       v   = vv + j*mat->lda;
1936289bc588SBarry Smith       sum = 0.0;
1937d0f46423SBarry Smith       for (i=0; i<A->rmap->n; i++) {
193833a8263dSBarry Smith         sum += PetscAbsScalar(*v);  v++;
1939289bc588SBarry Smith       }
1940064f8208SBarry Smith       if (sum > *nrm) *nrm = sum;
1941289bc588SBarry Smith     }
19429566063dSJacob Faibussowitsch     PetscCall(PetscLogFlops(1.0*A->cmap->n*A->rmap->n));
19433a40ed3dSBarry Smith   } else if (type == NORM_INFINITY) {
1944064f8208SBarry Smith     *nrm = 0.0;
1945d0f46423SBarry Smith     for (j=0; j<A->rmap->n; j++) {
1946ca15aa20SStefano Zampini       v   = vv + j;
1947289bc588SBarry Smith       sum = 0.0;
1948d0f46423SBarry Smith       for (i=0; i<A->cmap->n; i++) {
19491b807ce4Svictorle         sum += PetscAbsScalar(*v); v += mat->lda;
1950289bc588SBarry Smith       }
1951064f8208SBarry Smith       if (sum > *nrm) *nrm = sum;
1952289bc588SBarry Smith     }
19539566063dSJacob Faibussowitsch     PetscCall(PetscLogFlops(1.0*A->cmap->n*A->rmap->n));
1954e7e72b3dSBarry Smith   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No two norm");
19559566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A,(const PetscScalar**)&vv));
19563a40ed3dSBarry Smith   PetscFunctionReturn(0);
1957289bc588SBarry Smith }
1958289bc588SBarry Smith 
1959e0877f53SBarry Smith static PetscErrorCode MatSetOption_SeqDense(Mat A,MatOption op,PetscBool flg)
1960289bc588SBarry Smith {
1961c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *aij = (Mat_SeqDense*)A->data;
196267e560aaSBarry Smith 
19633a40ed3dSBarry Smith   PetscFunctionBegin;
1964b5a2b587SKris Buschelman   switch (op) {
1965b5a2b587SKris Buschelman   case MAT_ROW_ORIENTED:
19664e0d8c25SBarry Smith     aij->roworiented = flg;
1967b5a2b587SKris Buschelman     break;
1968512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1969b5a2b587SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
19703971808eSMatthew Knepley   case MAT_NEW_NONZERO_ALLOCATION_ERR:
19718c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
197213fa8e87SLisandro Dalcin   case MAT_KEEP_NONZERO_PATTERN:
1973b5a2b587SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1974b5a2b587SKris Buschelman   case MAT_USE_HASH_TABLE:
19750f8fb01aSBarry Smith   case MAT_IGNORE_ZERO_ENTRIES:
19765021d80fSJed Brown   case MAT_IGNORE_LOWER_TRIANGULAR:
1977071fcb05SBarry Smith   case MAT_SORTED_FULL:
19789566063dSJacob Faibussowitsch     PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op]));
19795021d80fSJed Brown     break;
19805021d80fSJed Brown   case MAT_SPD:
198177e54ba9SKris Buschelman   case MAT_SYMMETRIC:
198277e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
19839a4540c5SBarry Smith   case MAT_HERMITIAN:
19849a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
19855021d80fSJed Brown     /* These options are handled directly by MatSetOption() */
198677e54ba9SKris Buschelman     break;
1987b5a2b587SKris Buschelman   default:
198898921bdaSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]);
19893a40ed3dSBarry Smith   }
19903a40ed3dSBarry Smith   PetscFunctionReturn(0);
1991289bc588SBarry Smith }
1992289bc588SBarry Smith 
19933d8925e7SStefano Zampini PetscErrorCode MatZeroEntries_SeqDense(Mat A)
19946f0a148fSBarry Smith {
1995ec8511deSBarry Smith   Mat_SeqDense   *l = (Mat_SeqDense*)A->data;
19963d8925e7SStefano Zampini   PetscInt       lda=l->lda,m=A->rmap->n,n=A->cmap->n,j;
1997ca15aa20SStefano Zampini   PetscScalar    *v;
19983a40ed3dSBarry Smith 
19993a40ed3dSBarry Smith   PetscFunctionBegin;
20009566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayWrite(A,&v));
2001a5ce6ee0Svictorle   if (lda>m) {
20023d8925e7SStefano Zampini     for (j=0; j<n; j++) {
20039566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(v+j*lda,m));
2004a5ce6ee0Svictorle     }
2005a5ce6ee0Svictorle   } else {
20069566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(v,PetscInt64Mult(m,n)));
2007a5ce6ee0Svictorle   }
20089566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayWrite(A,&v));
20093a40ed3dSBarry Smith   PetscFunctionReturn(0);
20106f0a148fSBarry Smith }
20116f0a148fSBarry Smith 
2012e0877f53SBarry Smith static PetscErrorCode MatZeroRows_SeqDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
20136f0a148fSBarry Smith {
2014ec8511deSBarry Smith   Mat_SeqDense      *l = (Mat_SeqDense*)A->data;
2015b9679d65SBarry Smith   PetscInt          m  = l->lda, n = A->cmap->n, i,j;
2016ca15aa20SStefano Zampini   PetscScalar       *slot,*bb,*v;
201797b48c8fSBarry Smith   const PetscScalar *xx;
201855659b69SBarry Smith 
20193a40ed3dSBarry Smith   PetscFunctionBegin;
202076bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
2021b9679d65SBarry Smith     for (i=0; i<N; i++) {
20222c71b3e2SJacob Faibussowitsch       PetscCheckFalse(rows[i] < 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row requested to be zeroed");
20232c71b3e2SJacob Faibussowitsch       PetscCheckFalse(rows[i] >= A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %" PetscInt_FMT " requested to be zeroed greater than or equal number of rows %" PetscInt_FMT,rows[i],A->rmap->n);
2024b9679d65SBarry Smith     }
202576bd3646SJed Brown   }
2026ca15aa20SStefano Zampini   if (!N) PetscFunctionReturn(0);
2027b9679d65SBarry Smith 
202897b48c8fSBarry Smith   /* fix right hand side if needed */
202997b48c8fSBarry Smith   if (x && b) {
20309566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x,&xx));
20319566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b,&bb));
20322205254eSKarl Rupp     for (i=0; i<N; i++) bb[rows[i]] = diag*xx[rows[i]];
20339566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x,&xx));
20349566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b,&bb));
203597b48c8fSBarry Smith   }
203697b48c8fSBarry Smith 
20379566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(A,&v));
20386f0a148fSBarry Smith   for (i=0; i<N; i++) {
2039ca15aa20SStefano Zampini     slot = v + rows[i];
2040b9679d65SBarry Smith     for (j=0; j<n; j++) { *slot = 0.0; slot += m;}
20416f0a148fSBarry Smith   }
2042f4df32b1SMatthew Knepley   if (diag != 0.0) {
20432c71b3e2SJacob Faibussowitsch     PetscCheckFalse(A->rmap->n != A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only coded for square matrices");
20446f0a148fSBarry Smith     for (i=0; i<N; i++) {
2045ca15aa20SStefano Zampini       slot  = v + (m+1)*rows[i];
2046f4df32b1SMatthew Knepley       *slot = diag;
20476f0a148fSBarry Smith     }
20486f0a148fSBarry Smith   }
20499566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(A,&v));
20503a40ed3dSBarry Smith   PetscFunctionReturn(0);
20516f0a148fSBarry Smith }
2052557bce09SLois Curfman McInnes 
205349a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_SeqDense(Mat A,PetscInt *lda)
205449a6ff4bSBarry Smith {
205549a6ff4bSBarry Smith   Mat_SeqDense *mat = (Mat_SeqDense*)A->data;
205649a6ff4bSBarry Smith 
205749a6ff4bSBarry Smith   PetscFunctionBegin;
205849a6ff4bSBarry Smith   *lda = mat->lda;
205949a6ff4bSBarry Smith   PetscFunctionReturn(0);
206049a6ff4bSBarry Smith }
206149a6ff4bSBarry Smith 
2062637a0070SStefano Zampini PetscErrorCode MatDenseGetArray_SeqDense(Mat A,PetscScalar **array)
206364e87e97SBarry Smith {
2064c0bbcb79SLois Curfman McInnes   Mat_SeqDense *mat = (Mat_SeqDense*)A->data;
20653a40ed3dSBarry Smith 
20663a40ed3dSBarry Smith   PetscFunctionBegin;
206728b400f6SJacob Faibussowitsch   PetscCheck(!mat->matinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
206864e87e97SBarry Smith   *array = mat->v;
20693a40ed3dSBarry Smith   PetscFunctionReturn(0);
207064e87e97SBarry Smith }
20710754003eSLois Curfman McInnes 
2072637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArray_SeqDense(Mat A,PetscScalar **array)
2073ff14e315SSatish Balay {
20743a40ed3dSBarry Smith   PetscFunctionBegin;
207575f6d85dSStefano Zampini   if (array) *array = NULL;
20763a40ed3dSBarry Smith   PetscFunctionReturn(0);
2077ff14e315SSatish Balay }
20780754003eSLois Curfman McInnes 
20790f74d2c1SSatish Balay /*@
208049a6ff4bSBarry Smith    MatDenseGetLDA - gets the leading dimension of the array returned from MatDenseGetArray()
208149a6ff4bSBarry Smith 
2082ad16ce7aSStefano Zampini    Not collective
208349a6ff4bSBarry Smith 
208449a6ff4bSBarry Smith    Input Parameter:
208549a6ff4bSBarry Smith .  mat - a MATSEQDENSE or MATMPIDENSE matrix
208649a6ff4bSBarry Smith 
208749a6ff4bSBarry Smith    Output Parameter:
208849a6ff4bSBarry Smith .   lda - the leading dimension
208949a6ff4bSBarry Smith 
209049a6ff4bSBarry Smith    Level: intermediate
209149a6ff4bSBarry Smith 
2092ad16ce7aSStefano Zampini .seealso: MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead(), MatDenseSetLDA()
209349a6ff4bSBarry Smith @*/
209449a6ff4bSBarry Smith PetscErrorCode  MatDenseGetLDA(Mat A,PetscInt *lda)
209549a6ff4bSBarry Smith {
209649a6ff4bSBarry Smith   PetscFunctionBegin;
2097d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2098dadcf809SJacob Faibussowitsch   PetscValidIntPointer(lda,2);
209975f6d85dSStefano Zampini   MatCheckPreallocated(A,1);
2100cac4c232SBarry Smith   PetscUseMethod(A,"MatDenseGetLDA_C",(Mat,PetscInt*),(A,lda));
210149a6ff4bSBarry Smith   PetscFunctionReturn(0);
210249a6ff4bSBarry Smith }
210349a6ff4bSBarry Smith 
21040f74d2c1SSatish Balay /*@
2105ad16ce7aSStefano Zampini    MatDenseSetLDA - Sets the leading dimension of the array used by the dense matrix
2106ad16ce7aSStefano Zampini 
2107ad16ce7aSStefano Zampini    Not collective
2108ad16ce7aSStefano Zampini 
2109d8d19677SJose E. Roman    Input Parameters:
2110ad16ce7aSStefano Zampini +  mat - a MATSEQDENSE or MATMPIDENSE matrix
2111ad16ce7aSStefano Zampini -  lda - the leading dimension
2112ad16ce7aSStefano Zampini 
2113ad16ce7aSStefano Zampini    Level: intermediate
2114ad16ce7aSStefano Zampini 
2115ad16ce7aSStefano Zampini .seealso: MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead(), MatDenseGetLDA()
2116ad16ce7aSStefano Zampini @*/
2117ad16ce7aSStefano Zampini PetscErrorCode  MatDenseSetLDA(Mat A,PetscInt lda)
2118ad16ce7aSStefano Zampini {
2119ad16ce7aSStefano Zampini   PetscFunctionBegin;
2120ad16ce7aSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2121cac4c232SBarry Smith   PetscTryMethod(A,"MatDenseSetLDA_C",(Mat,PetscInt),(A,lda));
2122ad16ce7aSStefano Zampini   PetscFunctionReturn(0);
2123ad16ce7aSStefano Zampini }
2124ad16ce7aSStefano Zampini 
2125ad16ce7aSStefano Zampini /*@C
21266947451fSStefano Zampini    MatDenseGetArray - gives read-write access to the array where the data for a dense matrix is stored
212773a71a0fSBarry Smith 
21288572280aSBarry Smith    Logically Collective on Mat
212973a71a0fSBarry Smith 
213073a71a0fSBarry Smith    Input Parameter:
21316947451fSStefano Zampini .  mat - a dense matrix
213273a71a0fSBarry Smith 
213373a71a0fSBarry Smith    Output Parameter:
213473a71a0fSBarry Smith .   array - pointer to the data
213573a71a0fSBarry Smith 
213673a71a0fSBarry Smith    Level: intermediate
213773a71a0fSBarry Smith 
21386947451fSStefano Zampini .seealso: MatDenseRestoreArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead(), MatDenseGetArrayWrite(), MatDenseRestoreArrayWrite()
213973a71a0fSBarry Smith @*/
21408c778c55SBarry Smith PetscErrorCode  MatDenseGetArray(Mat A,PetscScalar **array)
214173a71a0fSBarry Smith {
214273a71a0fSBarry Smith   PetscFunctionBegin;
2143d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2144d5ea218eSStefano Zampini   PetscValidPointer(array,2);
2145cac4c232SBarry Smith   PetscUseMethod(A,"MatDenseGetArray_C",(Mat,PetscScalar**),(A,array));
214673a71a0fSBarry Smith   PetscFunctionReturn(0);
214773a71a0fSBarry Smith }
214873a71a0fSBarry Smith 
2149dec5eb66SMatthew G Knepley /*@C
2150579dbff0SBarry Smith    MatDenseRestoreArray - returns access to the array where the data for a dense matrix is stored obtained by MatDenseGetArray()
215173a71a0fSBarry Smith 
21528572280aSBarry Smith    Logically Collective on Mat
21538572280aSBarry Smith 
21548572280aSBarry Smith    Input Parameters:
21556947451fSStefano Zampini +  mat - a dense matrix
2156a2b725a8SWilliam Gropp -  array - pointer to the data
21578572280aSBarry Smith 
21588572280aSBarry Smith    Level: intermediate
21598572280aSBarry Smith 
21606947451fSStefano Zampini .seealso: MatDenseGetArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead(), MatDenseGetArrayWrite(), MatDenseRestoreArrayWrite()
21618572280aSBarry Smith @*/
21628572280aSBarry Smith PetscErrorCode  MatDenseRestoreArray(Mat A,PetscScalar **array)
21638572280aSBarry Smith {
21648572280aSBarry Smith   PetscFunctionBegin;
2165d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2166d5ea218eSStefano Zampini   PetscValidPointer(array,2);
2167cac4c232SBarry Smith   PetscUseMethod(A,"MatDenseRestoreArray_C",(Mat,PetscScalar**),(A,array));
21689566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)A));
2169637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA)
2170637a0070SStefano Zampini   A->offloadmask = PETSC_OFFLOAD_CPU;
2171637a0070SStefano Zampini #endif
21728572280aSBarry Smith   PetscFunctionReturn(0);
21738572280aSBarry Smith }
21748572280aSBarry Smith 
21758572280aSBarry Smith /*@C
21766947451fSStefano Zampini    MatDenseGetArrayRead - gives read-only access to the array where the data for a dense matrix is stored
21778572280aSBarry Smith 
21788572280aSBarry Smith    Not Collective
21798572280aSBarry Smith 
21808572280aSBarry Smith    Input Parameter:
21816947451fSStefano Zampini .  mat - a dense matrix
21828572280aSBarry Smith 
21838572280aSBarry Smith    Output Parameter:
21848572280aSBarry Smith .   array - pointer to the data
21858572280aSBarry Smith 
21868572280aSBarry Smith    Level: intermediate
21878572280aSBarry Smith 
21886947451fSStefano Zampini .seealso: MatDenseRestoreArrayRead(), MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayWrite(), MatDenseRestoreArrayWrite()
21898572280aSBarry Smith @*/
21908572280aSBarry Smith PetscErrorCode  MatDenseGetArrayRead(Mat A,const PetscScalar **array)
21918572280aSBarry Smith {
21928572280aSBarry Smith   PetscFunctionBegin;
2193d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2194d5ea218eSStefano Zampini   PetscValidPointer(array,2);
2195cac4c232SBarry Smith   PetscUseMethod(A,"MatDenseGetArrayRead_C",(Mat,const PetscScalar**),(A,array));
21968572280aSBarry Smith   PetscFunctionReturn(0);
21978572280aSBarry Smith }
21988572280aSBarry Smith 
21998572280aSBarry Smith /*@C
22006947451fSStefano Zampini    MatDenseRestoreArrayRead - returns access to the array where the data for a dense matrix is stored obtained by MatDenseGetArrayRead()
22018572280aSBarry Smith 
220273a71a0fSBarry Smith    Not Collective
220373a71a0fSBarry Smith 
220473a71a0fSBarry Smith    Input Parameters:
22056947451fSStefano Zampini +  mat - a dense matrix
2206a2b725a8SWilliam Gropp -  array - pointer to the data
220773a71a0fSBarry Smith 
220873a71a0fSBarry Smith    Level: intermediate
220973a71a0fSBarry Smith 
22106947451fSStefano Zampini .seealso: MatDenseGetArrayRead(), MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayWrite(), MatDenseRestoreArrayWrite()
221173a71a0fSBarry Smith @*/
22128572280aSBarry Smith PetscErrorCode  MatDenseRestoreArrayRead(Mat A,const PetscScalar **array)
221373a71a0fSBarry Smith {
221473a71a0fSBarry Smith   PetscFunctionBegin;
2215d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2216d5ea218eSStefano Zampini   PetscValidPointer(array,2);
2217cac4c232SBarry Smith   PetscUseMethod(A,"MatDenseRestoreArrayRead_C",(Mat,const PetscScalar**),(A,array));
221873a71a0fSBarry Smith   PetscFunctionReturn(0);
221973a71a0fSBarry Smith }
222073a71a0fSBarry Smith 
22216947451fSStefano Zampini /*@C
22226947451fSStefano Zampini    MatDenseGetArrayWrite - gives write-only access to the array where the data for a dense matrix is stored
22236947451fSStefano Zampini 
22246947451fSStefano Zampini    Not Collective
22256947451fSStefano Zampini 
22266947451fSStefano Zampini    Input Parameter:
22276947451fSStefano Zampini .  mat - a dense matrix
22286947451fSStefano Zampini 
22296947451fSStefano Zampini    Output Parameter:
22306947451fSStefano Zampini .   array - pointer to the data
22316947451fSStefano Zampini 
22326947451fSStefano Zampini    Level: intermediate
22336947451fSStefano Zampini 
22346947451fSStefano Zampini .seealso: MatDenseRestoreArrayWrite(), MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead()
22356947451fSStefano Zampini @*/
22366947451fSStefano Zampini PetscErrorCode  MatDenseGetArrayWrite(Mat A,PetscScalar **array)
22376947451fSStefano Zampini {
22386947451fSStefano Zampini   PetscFunctionBegin;
2239d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2240d5ea218eSStefano Zampini   PetscValidPointer(array,2);
2241cac4c232SBarry Smith   PetscUseMethod(A,"MatDenseGetArrayWrite_C",(Mat,PetscScalar**),(A,array));
22426947451fSStefano Zampini   PetscFunctionReturn(0);
22436947451fSStefano Zampini }
22446947451fSStefano Zampini 
22456947451fSStefano Zampini /*@C
22466947451fSStefano Zampini    MatDenseRestoreArrayWrite - returns access to the array where the data for a dense matrix is stored obtained by MatDenseGetArrayWrite()
22476947451fSStefano Zampini 
22486947451fSStefano Zampini    Not Collective
22496947451fSStefano Zampini 
22506947451fSStefano Zampini    Input Parameters:
22516947451fSStefano Zampini +  mat - a dense matrix
22526947451fSStefano Zampini -  array - pointer to the data
22536947451fSStefano Zampini 
22546947451fSStefano Zampini    Level: intermediate
22556947451fSStefano Zampini 
22566947451fSStefano Zampini .seealso: MatDenseGetArrayWrite(), MatDenseGetArray(), MatDenseRestoreArray(), MatDenseGetArrayRead(), MatDenseRestoreArrayRead()
22576947451fSStefano Zampini @*/
22586947451fSStefano Zampini PetscErrorCode  MatDenseRestoreArrayWrite(Mat A,PetscScalar **array)
22596947451fSStefano Zampini {
22606947451fSStefano Zampini   PetscFunctionBegin;
2261d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2262d5ea218eSStefano Zampini   PetscValidPointer(array,2);
2263cac4c232SBarry Smith   PetscUseMethod(A,"MatDenseRestoreArrayWrite_C",(Mat,PetscScalar**),(A,array));
22649566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)A));
22656947451fSStefano Zampini #if defined(PETSC_HAVE_CUDA)
22666947451fSStefano Zampini   A->offloadmask = PETSC_OFFLOAD_CPU;
22676947451fSStefano Zampini #endif
22686947451fSStefano Zampini   PetscFunctionReturn(0);
22696947451fSStefano Zampini }
22706947451fSStefano Zampini 
2271023c16fcSToby Isaac static PetscErrorCode MatCreateSubMatrix_SeqDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B)
22720754003eSLois Curfman McInnes {
2273c0bbcb79SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)A->data;
2274bf5a80bcSToby Isaac   PetscInt       i,j,nrows,ncols,ldb;
22755d0c19d7SBarry Smith   const PetscInt *irow,*icol;
227687828ca2SBarry Smith   PetscScalar    *av,*bv,*v = mat->v;
22770754003eSLois Curfman McInnes   Mat            newmat;
22780754003eSLois Curfman McInnes 
22793a40ed3dSBarry Smith   PetscFunctionBegin;
22809566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(isrow,&irow));
22819566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscol,&icol));
22829566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(isrow,&nrows));
22839566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol,&ncols));
22840754003eSLois Curfman McInnes 
2285182d2002SSatish Balay   /* Check submatrixcall */
2286182d2002SSatish Balay   if (scall == MAT_REUSE_MATRIX) {
228713f74950SBarry Smith     PetscInt n_cols,n_rows;
22889566063dSJacob Faibussowitsch     PetscCall(MatGetSize(*B,&n_rows,&n_cols));
228921a2c019SBarry Smith     if (n_rows != nrows || n_cols != ncols) {
2290f746d493SDmitry Karpeev       /* resize the result matrix to match number of requested rows/columns */
22919566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(*B,nrows,ncols,nrows,ncols));
229221a2c019SBarry Smith     }
2293182d2002SSatish Balay     newmat = *B;
2294182d2002SSatish Balay   } else {
22950754003eSLois Curfman McInnes     /* Create and fill new matrix */
22969566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&newmat));
22979566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(newmat,nrows,ncols,nrows,ncols));
22989566063dSJacob Faibussowitsch     PetscCall(MatSetType(newmat,((PetscObject)A)->type_name));
22999566063dSJacob Faibussowitsch     PetscCall(MatSeqDenseSetPreallocation(newmat,NULL));
2300182d2002SSatish Balay   }
2301182d2002SSatish Balay 
2302182d2002SSatish Balay   /* Now extract the data pointers and do the copy,column at a time */
23039566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(newmat,&bv));
23049566063dSJacob Faibussowitsch   PetscCall(MatDenseGetLDA(newmat,&ldb));
2305182d2002SSatish Balay   for (i=0; i<ncols; i++) {
23066de62eeeSBarry Smith     av = v + mat->lda*icol[i];
2307ca15aa20SStefano Zampini     for (j=0; j<nrows; j++) bv[j] = av[irow[j]];
2308bf5a80bcSToby Isaac     bv += ldb;
23090754003eSLois Curfman McInnes   }
23109566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(newmat,&bv));
2311182d2002SSatish Balay 
2312182d2002SSatish Balay   /* Assemble the matrices so that the correct flags are set */
23139566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY));
23149566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY));
23150754003eSLois Curfman McInnes 
23160754003eSLois Curfman McInnes   /* Free work space */
23179566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(isrow,&irow));
23189566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscol,&icol));
2319182d2002SSatish Balay   *B   = newmat;
23203a40ed3dSBarry Smith   PetscFunctionReturn(0);
23210754003eSLois Curfman McInnes }
23220754003eSLois Curfman McInnes 
23237dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrices_SeqDense(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat *B[])
2324905e6a2fSBarry Smith {
232513f74950SBarry Smith   PetscInt       i;
2326905e6a2fSBarry Smith 
23273a40ed3dSBarry Smith   PetscFunctionBegin;
2328905e6a2fSBarry Smith   if (scall == MAT_INITIAL_MATRIX) {
23299566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(n,B));
2330905e6a2fSBarry Smith   }
2331905e6a2fSBarry Smith 
2332905e6a2fSBarry Smith   for (i=0; i<n; i++) {
23339566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqDense(A,irow[i],icol[i],scall,&(*B)[i]));
2334905e6a2fSBarry Smith   }
23353a40ed3dSBarry Smith   PetscFunctionReturn(0);
2336905e6a2fSBarry Smith }
2337905e6a2fSBarry Smith 
2338e0877f53SBarry Smith static PetscErrorCode MatAssemblyBegin_SeqDense(Mat mat,MatAssemblyType mode)
2339c0aa2d19SHong Zhang {
2340c0aa2d19SHong Zhang   PetscFunctionBegin;
2341c0aa2d19SHong Zhang   PetscFunctionReturn(0);
2342c0aa2d19SHong Zhang }
2343c0aa2d19SHong Zhang 
2344e0877f53SBarry Smith static PetscErrorCode MatAssemblyEnd_SeqDense(Mat mat,MatAssemblyType mode)
2345c0aa2d19SHong Zhang {
2346c0aa2d19SHong Zhang   PetscFunctionBegin;
2347c0aa2d19SHong Zhang   PetscFunctionReturn(0);
2348c0aa2d19SHong Zhang }
2349c0aa2d19SHong Zhang 
2350a76f77c3SStefano Zampini PetscErrorCode MatCopy_SeqDense(Mat A,Mat B,MatStructure str)
23514b0e389bSBarry Smith {
23524b0e389bSBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)A->data,*b = (Mat_SeqDense*)B->data;
2353ca15aa20SStefano Zampini   const PetscScalar *va;
2354ca15aa20SStefano Zampini   PetscScalar       *vb;
2355d0f46423SBarry Smith   PetscInt          lda1=a->lda,lda2=b->lda, m=A->rmap->n,n=A->cmap->n, j;
23563a40ed3dSBarry Smith 
23573a40ed3dSBarry Smith   PetscFunctionBegin;
235833f4a19fSKris Buschelman   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
235933f4a19fSKris Buschelman   if (A->ops->copy != B->ops->copy) {
23609566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A,B,str));
23613a40ed3dSBarry Smith     PetscFunctionReturn(0);
23623a40ed3dSBarry Smith   }
23632c71b3e2SJacob Faibussowitsch   PetscCheckFalse(m != B->rmap->n || n != B->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"size(B) != size(A)");
23649566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A,&va));
23659566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(B,&vb));
2366a5ce6ee0Svictorle   if (lda1>m || lda2>m) {
23670dbb7854Svictorle     for (j=0; j<n; j++) {
23689566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(vb+j*lda2,va+j*lda1,m));
2369a5ce6ee0Svictorle     }
2370a5ce6ee0Svictorle   } else {
23719566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(vb,va,A->rmap->n*A->cmap->n));
2372a5ce6ee0Svictorle   }
23739566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(B,&vb));
23749566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A,&va));
23759566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY));
23769566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY));
2377273d9f13SBarry Smith   PetscFunctionReturn(0);
2378273d9f13SBarry Smith }
2379273d9f13SBarry Smith 
238075f6d85dSStefano Zampini PetscErrorCode MatSetUp_SeqDense(Mat A)
2381273d9f13SBarry Smith {
2382273d9f13SBarry Smith   PetscFunctionBegin;
23839566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(A->rmap));
23849566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(A->cmap));
238518992e5dSStefano Zampini   if (!A->preallocated) {
23869566063dSJacob Faibussowitsch     PetscCall(MatSeqDenseSetPreallocation(A,NULL));
238718992e5dSStefano Zampini   }
23883a40ed3dSBarry Smith   PetscFunctionReturn(0);
23894b0e389bSBarry Smith }
23904b0e389bSBarry Smith 
2391ba337c44SJed Brown static PetscErrorCode MatConjugate_SeqDense(Mat A)
2392ba337c44SJed Brown {
23934396437dSToby Isaac   Mat_SeqDense   *mat = (Mat_SeqDense *) A->data;
239406c5243aSJose E. Roman   PetscInt       i,j;
23954396437dSToby Isaac   PetscInt       min = PetscMin(A->rmap->n,A->cmap->n);
2396ca15aa20SStefano Zampini   PetscScalar    *aa;
2397ba337c44SJed Brown 
2398ba337c44SJed Brown   PetscFunctionBegin;
23999566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(A,&aa));
240006c5243aSJose E. Roman   for (j=0; j<A->cmap->n; j++) {
240106c5243aSJose E. Roman     for (i=0; i<A->rmap->n; i++) aa[i+j*mat->lda] = PetscConj(aa[i+j*mat->lda]);
240206c5243aSJose E. Roman   }
24039566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(A,&aa));
24044396437dSToby Isaac   if (mat->tau) for (i = 0; i < min; i++) mat->tau[i] = PetscConj(mat->tau[i]);
2405ba337c44SJed Brown   PetscFunctionReturn(0);
2406ba337c44SJed Brown }
2407ba337c44SJed Brown 
2408ba337c44SJed Brown static PetscErrorCode MatRealPart_SeqDense(Mat A)
2409ba337c44SJed Brown {
241006c5243aSJose E. Roman   Mat_SeqDense   *mat = (Mat_SeqDense *) A->data;
241106c5243aSJose E. Roman   PetscInt       i,j;
2412ca15aa20SStefano Zampini   PetscScalar    *aa;
2413ba337c44SJed Brown 
2414ba337c44SJed Brown   PetscFunctionBegin;
24159566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(A,&aa));
241606c5243aSJose E. Roman   for (j=0; j<A->cmap->n; j++) {
241706c5243aSJose E. Roman     for (i=0; i<A->rmap->n; i++) aa[i+j*mat->lda] = PetscRealPart(aa[i+j*mat->lda]);
241806c5243aSJose E. Roman   }
24199566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(A,&aa));
2420ba337c44SJed Brown   PetscFunctionReturn(0);
2421ba337c44SJed Brown }
2422ba337c44SJed Brown 
2423ba337c44SJed Brown static PetscErrorCode MatImaginaryPart_SeqDense(Mat A)
2424ba337c44SJed Brown {
242506c5243aSJose E. Roman   Mat_SeqDense   *mat = (Mat_SeqDense *) A->data;
242606c5243aSJose E. Roman   PetscInt       i,j;
2427ca15aa20SStefano Zampini   PetscScalar    *aa;
2428ba337c44SJed Brown 
2429ba337c44SJed Brown   PetscFunctionBegin;
24309566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(A,&aa));
243106c5243aSJose E. Roman   for (j=0; j<A->cmap->n; j++) {
243206c5243aSJose E. Roman     for (i=0; i<A->rmap->n; i++) aa[i+j*mat->lda] = PetscImaginaryPart(aa[i+j*mat->lda]);
243306c5243aSJose E. Roman   }
24349566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(A,&aa));
2435ba337c44SJed Brown   PetscFunctionReturn(0);
2436ba337c44SJed Brown }
2437284134d9SBarry Smith 
2438a9fe9ddaSSatish Balay /* ----------------------------------------------------------------*/
24394222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat C)
2440a9fe9ddaSSatish Balay {
2441d0f46423SBarry Smith   PetscInt       m=A->rmap->n,n=B->cmap->n;
24427a3c3d58SStefano Zampini   PetscBool      cisdense;
2443a9fe9ddaSSatish Balay 
2444ee16a9a1SHong Zhang   PetscFunctionBegin;
24459566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C,m,n,m,n));
24469566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATSEQDENSE,MATSEQDENSECUDA,""));
24477a3c3d58SStefano Zampini   if (!cisdense) {
24487a3c3d58SStefano Zampini     PetscBool flg;
24497a3c3d58SStefano Zampini 
24509566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompare((PetscObject)B,((PetscObject)A)->type_name,&flg));
24519566063dSJacob Faibussowitsch     PetscCall(MatSetType(C,flg ? ((PetscObject)A)->type_name : MATDENSE));
24527a3c3d58SStefano Zampini   }
24539566063dSJacob Faibussowitsch   PetscCall(MatSetUp(C));
2454ee16a9a1SHong Zhang   PetscFunctionReturn(0);
2455ee16a9a1SHong Zhang }
2456a9fe9ddaSSatish Balay 
2457a9fe9ddaSSatish Balay PetscErrorCode MatMatMultNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C)
2458a9fe9ddaSSatish Balay {
24596718818eSStefano Zampini   Mat_SeqDense       *a=(Mat_SeqDense*)A->data,*b=(Mat_SeqDense*)B->data,*c=(Mat_SeqDense*)C->data;
24600805154bSBarry Smith   PetscBLASInt       m,n,k;
2461ca15aa20SStefano Zampini   const PetscScalar *av,*bv;
2462ca15aa20SStefano Zampini   PetscScalar       *cv;
2463a9fe9ddaSSatish Balay   PetscScalar       _DOne=1.0,_DZero=0.0;
2464a9fe9ddaSSatish Balay 
2465a9fe9ddaSSatish Balay   PetscFunctionBegin;
24669566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(C->rmap->n,&m));
24679566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(C->cmap->n,&n));
24689566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(A->cmap->n,&k));
246949d0e964SStefano Zampini   if (!m || !n || !k) PetscFunctionReturn(0);
24709566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A,&av));
24719566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(B,&bv));
24729566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayWrite(C,&cv));
2473ca15aa20SStefano Zampini   PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&m,&n,&k,&_DOne,av,&a->lda,bv,&b->lda,&_DZero,cv,&c->lda));
24749566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(1.0*m*n*k + 1.0*m*n*(k-1)));
24759566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A,&av));
24769566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(B,&bv));
24779566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayWrite(C,&cv));
2478a9fe9ddaSSatish Balay   PetscFunctionReturn(0);
2479a9fe9ddaSSatish Balay }
2480a9fe9ddaSSatish Balay 
24814222ddf1SHong Zhang PetscErrorCode MatMatTransposeMultSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat C)
248269f65d41SStefano Zampini {
248369f65d41SStefano Zampini   PetscInt       m=A->rmap->n,n=B->rmap->n;
24847a3c3d58SStefano Zampini   PetscBool      cisdense;
248569f65d41SStefano Zampini 
248669f65d41SStefano Zampini   PetscFunctionBegin;
24879566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C,m,n,m,n));
24889566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATSEQDENSE,MATSEQDENSECUDA,""));
24897a3c3d58SStefano Zampini   if (!cisdense) {
24907a3c3d58SStefano Zampini     PetscBool flg;
24917a3c3d58SStefano Zampini 
24929566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompare((PetscObject)B,((PetscObject)A)->type_name,&flg));
24939566063dSJacob Faibussowitsch     PetscCall(MatSetType(C,flg ? ((PetscObject)A)->type_name : MATDENSE));
24947a3c3d58SStefano Zampini   }
24959566063dSJacob Faibussowitsch   PetscCall(MatSetUp(C));
249669f65d41SStefano Zampini   PetscFunctionReturn(0);
249769f65d41SStefano Zampini }
249869f65d41SStefano Zampini 
249969f65d41SStefano Zampini PetscErrorCode MatMatTransposeMultNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C)
250069f65d41SStefano Zampini {
250169f65d41SStefano Zampini   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
250269f65d41SStefano Zampini   Mat_SeqDense      *b = (Mat_SeqDense*)B->data;
250369f65d41SStefano Zampini   Mat_SeqDense      *c = (Mat_SeqDense*)C->data;
25046718818eSStefano Zampini   const PetscScalar *av,*bv;
25056718818eSStefano Zampini   PetscScalar       *cv;
250669f65d41SStefano Zampini   PetscBLASInt      m,n,k;
250769f65d41SStefano Zampini   PetscScalar       _DOne=1.0,_DZero=0.0;
250869f65d41SStefano Zampini 
250969f65d41SStefano Zampini   PetscFunctionBegin;
25109566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(C->rmap->n,&m));
25119566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(C->cmap->n,&n));
25129566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(A->cmap->n,&k));
251349d0e964SStefano Zampini   if (!m || !n || !k) PetscFunctionReturn(0);
25149566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A,&av));
25159566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(B,&bv));
25169566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayWrite(C,&cv));
25176718818eSStefano Zampini   PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&m,&n,&k,&_DOne,av,&a->lda,bv,&b->lda,&_DZero,cv,&c->lda));
25189566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A,&av));
25199566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(B,&bv));
25209566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayWrite(C,&cv));
25219566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(1.0*m*n*k + 1.0*m*n*(k-1)));
252269f65d41SStefano Zampini   PetscFunctionReturn(0);
252369f65d41SStefano Zampini }
252469f65d41SStefano Zampini 
25254222ddf1SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_SeqDense_SeqDense(Mat A,Mat B,PetscReal fill,Mat C)
2526a9fe9ddaSSatish Balay {
2527d0f46423SBarry Smith   PetscInt       m=A->cmap->n,n=B->cmap->n;
25287a3c3d58SStefano Zampini   PetscBool      cisdense;
2529a9fe9ddaSSatish Balay 
2530ee16a9a1SHong Zhang   PetscFunctionBegin;
25319566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C,m,n,m,n));
25329566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATSEQDENSE,MATSEQDENSECUDA,""));
25337a3c3d58SStefano Zampini   if (!cisdense) {
25347a3c3d58SStefano Zampini     PetscBool flg;
25357a3c3d58SStefano Zampini 
25369566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompare((PetscObject)B,((PetscObject)A)->type_name,&flg));
25379566063dSJacob Faibussowitsch     PetscCall(MatSetType(C,flg ? ((PetscObject)A)->type_name : MATDENSE));
25387a3c3d58SStefano Zampini   }
25399566063dSJacob Faibussowitsch   PetscCall(MatSetUp(C));
2540ee16a9a1SHong Zhang   PetscFunctionReturn(0);
2541ee16a9a1SHong Zhang }
2542a9fe9ddaSSatish Balay 
254375648e8dSHong Zhang PetscErrorCode MatTransposeMatMultNumeric_SeqDense_SeqDense(Mat A,Mat B,Mat C)
2544a9fe9ddaSSatish Balay {
2545a9fe9ddaSSatish Balay   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
2546a9fe9ddaSSatish Balay   Mat_SeqDense      *b = (Mat_SeqDense*)B->data;
2547a9fe9ddaSSatish Balay   Mat_SeqDense      *c = (Mat_SeqDense*)C->data;
25486718818eSStefano Zampini   const PetscScalar *av,*bv;
25496718818eSStefano Zampini   PetscScalar       *cv;
25500805154bSBarry Smith   PetscBLASInt      m,n,k;
2551a9fe9ddaSSatish Balay   PetscScalar       _DOne=1.0,_DZero=0.0;
2552a9fe9ddaSSatish Balay 
2553a9fe9ddaSSatish Balay   PetscFunctionBegin;
25549566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(C->rmap->n,&m));
25559566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(C->cmap->n,&n));
25569566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(A->rmap->n,&k));
255749d0e964SStefano Zampini   if (!m || !n || !k) PetscFunctionReturn(0);
25589566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A,&av));
25599566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(B,&bv));
25609566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayWrite(C,&cv));
25616718818eSStefano Zampini   PetscStackCallBLAS("BLASgemm",BLASgemm_("T","N",&m,&n,&k,&_DOne,av,&a->lda,bv,&b->lda,&_DZero,cv,&c->lda));
25629566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A,&av));
25639566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(B,&bv));
25649566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayWrite(C,&cv));
25659566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(1.0*m*n*k + 1.0*m*n*(k-1)));
2566a9fe9ddaSSatish Balay   PetscFunctionReturn(0);
2567a9fe9ddaSSatish Balay }
2568985db425SBarry Smith 
25694222ddf1SHong Zhang /* ----------------------------------------------- */
25704222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqDense_AB(Mat C)
25714222ddf1SHong Zhang {
25724222ddf1SHong Zhang   PetscFunctionBegin;
25734222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_SeqDense_SeqDense;
25744222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
25754222ddf1SHong Zhang   PetscFunctionReturn(0);
25764222ddf1SHong Zhang }
25774222ddf1SHong Zhang 
25784222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqDense_AtB(Mat C)
25794222ddf1SHong Zhang {
25804222ddf1SHong Zhang   PetscFunctionBegin;
25814222ddf1SHong Zhang   C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_SeqDense_SeqDense;
25824222ddf1SHong Zhang   C->ops->productsymbolic          = MatProductSymbolic_AtB;
25834222ddf1SHong Zhang   PetscFunctionReturn(0);
25844222ddf1SHong Zhang }
25854222ddf1SHong Zhang 
25864222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqDense_ABt(Mat C)
25874222ddf1SHong Zhang {
25884222ddf1SHong Zhang   PetscFunctionBegin;
25894222ddf1SHong Zhang   C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_SeqDense_SeqDense;
25904222ddf1SHong Zhang   C->ops->productsymbolic          = MatProductSymbolic_ABt;
25914222ddf1SHong Zhang   PetscFunctionReturn(0);
25924222ddf1SHong Zhang }
25934222ddf1SHong Zhang 
25944222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_SeqDense(Mat C)
25954222ddf1SHong Zhang {
25964222ddf1SHong Zhang   Mat_Product    *product = C->product;
25974222ddf1SHong Zhang 
25984222ddf1SHong Zhang   PetscFunctionBegin;
25994222ddf1SHong Zhang   switch (product->type) {
26004222ddf1SHong Zhang   case MATPRODUCT_AB:
26019566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_SeqDense_AB(C));
26024222ddf1SHong Zhang     break;
26034222ddf1SHong Zhang   case MATPRODUCT_AtB:
26049566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_SeqDense_AtB(C));
26054222ddf1SHong Zhang     break;
26064222ddf1SHong Zhang   case MATPRODUCT_ABt:
26079566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_SeqDense_ABt(C));
26084222ddf1SHong Zhang     break;
26096718818eSStefano Zampini   default:
26104222ddf1SHong Zhang     break;
26114222ddf1SHong Zhang   }
26124222ddf1SHong Zhang   PetscFunctionReturn(0);
26134222ddf1SHong Zhang }
26144222ddf1SHong Zhang /* ----------------------------------------------- */
26154222ddf1SHong Zhang 
2616e0877f53SBarry Smith static PetscErrorCode MatGetRowMax_SeqDense(Mat A,Vec v,PetscInt idx[])
2617985db425SBarry Smith {
2618985db425SBarry Smith   Mat_SeqDense       *a = (Mat_SeqDense*)A->data;
2619d0f46423SBarry Smith   PetscInt           i,j,m = A->rmap->n,n = A->cmap->n,p;
2620985db425SBarry Smith   PetscScalar        *x;
2621ca15aa20SStefano Zampini   const PetscScalar *aa;
2622985db425SBarry Smith 
2623985db425SBarry Smith   PetscFunctionBegin;
262428b400f6SJacob Faibussowitsch   PetscCheck(!A->factortype,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
26259566063dSJacob Faibussowitsch   PetscCall(VecGetArray(v,&x));
26269566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(v,&p));
26279566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A,&aa));
26282c71b3e2SJacob Faibussowitsch   PetscCheckFalse(p != A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector");
2629985db425SBarry Smith   for (i=0; i<m; i++) {
2630985db425SBarry Smith     x[i] = aa[i]; if (idx) idx[i] = 0;
2631985db425SBarry Smith     for (j=1; j<n; j++) {
2632ca15aa20SStefano Zampini       if (PetscRealPart(x[i]) < PetscRealPart(aa[i+a->lda*j])) {x[i] = aa[i + a->lda*j]; if (idx) idx[i] = j;}
2633985db425SBarry Smith     }
2634985db425SBarry Smith   }
26359566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A,&aa));
26369566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(v,&x));
2637985db425SBarry Smith   PetscFunctionReturn(0);
2638985db425SBarry Smith }
2639985db425SBarry Smith 
2640e0877f53SBarry Smith static PetscErrorCode MatGetRowMaxAbs_SeqDense(Mat A,Vec v,PetscInt idx[])
2641985db425SBarry Smith {
2642985db425SBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
2643d0f46423SBarry Smith   PetscInt          i,j,m = A->rmap->n,n = A->cmap->n,p;
2644985db425SBarry Smith   PetscScalar       *x;
2645985db425SBarry Smith   PetscReal         atmp;
2646ca15aa20SStefano Zampini   const PetscScalar *aa;
2647985db425SBarry Smith 
2648985db425SBarry Smith   PetscFunctionBegin;
264928b400f6SJacob Faibussowitsch   PetscCheck(!A->factortype,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
26509566063dSJacob Faibussowitsch   PetscCall(VecGetArray(v,&x));
26519566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(v,&p));
26529566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A,&aa));
26532c71b3e2SJacob Faibussowitsch   PetscCheckFalse(p != A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector");
2654985db425SBarry Smith   for (i=0; i<m; i++) {
26559189402eSHong Zhang     x[i] = PetscAbsScalar(aa[i]);
2656985db425SBarry Smith     for (j=1; j<n; j++) {
2657ca15aa20SStefano Zampini       atmp = PetscAbsScalar(aa[i+a->lda*j]);
2658985db425SBarry Smith       if (PetscAbsScalar(x[i]) < atmp) {x[i] = atmp; if (idx) idx[i] = j;}
2659985db425SBarry Smith     }
2660985db425SBarry Smith   }
26619566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A,&aa));
26629566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(v,&x));
2663985db425SBarry Smith   PetscFunctionReturn(0);
2664985db425SBarry Smith }
2665985db425SBarry Smith 
2666e0877f53SBarry Smith static PetscErrorCode MatGetRowMin_SeqDense(Mat A,Vec v,PetscInt idx[])
2667985db425SBarry Smith {
2668985db425SBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
2669d0f46423SBarry Smith   PetscInt          i,j,m = A->rmap->n,n = A->cmap->n,p;
2670985db425SBarry Smith   PetscScalar       *x;
2671ca15aa20SStefano Zampini   const PetscScalar *aa;
2672985db425SBarry Smith 
2673985db425SBarry Smith   PetscFunctionBegin;
267428b400f6SJacob Faibussowitsch   PetscCheck(!A->factortype,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
26759566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A,&aa));
26769566063dSJacob Faibussowitsch   PetscCall(VecGetArray(v,&x));
26779566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(v,&p));
26782c71b3e2SJacob Faibussowitsch   PetscCheckFalse(p != A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector");
2679985db425SBarry Smith   for (i=0; i<m; i++) {
2680985db425SBarry Smith     x[i] = aa[i]; if (idx) idx[i] = 0;
2681985db425SBarry Smith     for (j=1; j<n; j++) {
2682ca15aa20SStefano Zampini       if (PetscRealPart(x[i]) > PetscRealPart(aa[i+a->lda*j])) {x[i] = aa[i + a->lda*j]; if (idx) idx[i] = j;}
2683985db425SBarry Smith     }
2684985db425SBarry Smith   }
26859566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(v,&x));
26869566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A,&aa));
2687985db425SBarry Smith   PetscFunctionReturn(0);
2688985db425SBarry Smith }
2689985db425SBarry Smith 
2690637a0070SStefano Zampini PetscErrorCode MatGetColumnVector_SeqDense(Mat A,Vec v,PetscInt col)
26918d0534beSBarry Smith {
26928d0534beSBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)A->data;
26938d0534beSBarry Smith   PetscScalar       *x;
2694ca15aa20SStefano Zampini   const PetscScalar *aa;
26958d0534beSBarry Smith 
26968d0534beSBarry Smith   PetscFunctionBegin;
269728b400f6SJacob Faibussowitsch   PetscCheck(!A->factortype,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
26989566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A,&aa));
26999566063dSJacob Faibussowitsch   PetscCall(VecGetArray(v,&x));
27009566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(x,aa+col*a->lda,A->rmap->n));
27019566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(v,&x));
27029566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A,&aa));
27038d0534beSBarry Smith   PetscFunctionReturn(0);
27048d0534beSBarry Smith }
27058d0534beSBarry Smith 
2706857cbf51SRichard Tran Mills PETSC_INTERN PetscErrorCode MatGetColumnReductions_SeqDense(Mat A,PetscInt type,PetscReal *reductions)
27070716a85fSBarry Smith {
27080716a85fSBarry Smith   PetscInt          i,j,m,n;
27091683a169SBarry Smith   const PetscScalar *a;
27100716a85fSBarry Smith 
27110716a85fSBarry Smith   PetscFunctionBegin;
27129566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A,&m,&n));
27139566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(reductions,n));
27149566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A,&a));
2715857cbf51SRichard Tran Mills   if (type == NORM_2) {
27160716a85fSBarry Smith     for (i=0; i<n; i++) {
27170716a85fSBarry Smith       for (j=0; j<m; j++) {
2718a873a8cdSSam Reynolds         reductions[i] += PetscAbsScalar(a[j]*a[j]);
27190716a85fSBarry Smith       }
27200716a85fSBarry Smith       a += m;
27210716a85fSBarry Smith     }
2722857cbf51SRichard Tran Mills   } else if (type == NORM_1) {
27230716a85fSBarry Smith     for (i=0; i<n; i++) {
27240716a85fSBarry Smith       for (j=0; j<m; j++) {
2725a873a8cdSSam Reynolds         reductions[i] += PetscAbsScalar(a[j]);
27260716a85fSBarry Smith       }
27270716a85fSBarry Smith       a += m;
27280716a85fSBarry Smith     }
2729857cbf51SRichard Tran Mills   } else if (type == NORM_INFINITY) {
27300716a85fSBarry Smith     for (i=0; i<n; i++) {
27310716a85fSBarry Smith       for (j=0; j<m; j++) {
2732a873a8cdSSam Reynolds         reductions[i] = PetscMax(PetscAbsScalar(a[j]),reductions[i]);
27330716a85fSBarry Smith       }
27340716a85fSBarry Smith       a += m;
27350716a85fSBarry Smith     }
2736857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) {
2737a873a8cdSSam Reynolds     for (i=0; i<n; i++) {
2738a873a8cdSSam Reynolds       for (j=0; j<m; j++) {
2739857cbf51SRichard Tran Mills         reductions[i] += PetscRealPart(a[j]);
2740a873a8cdSSam Reynolds       }
2741a873a8cdSSam Reynolds       a += m;
2742a873a8cdSSam Reynolds     }
2743857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) {
2744857cbf51SRichard Tran Mills     for (i=0; i<n; i++) {
2745857cbf51SRichard Tran Mills       for (j=0; j<m; j++) {
2746857cbf51SRichard Tran Mills         reductions[i] += PetscImaginaryPart(a[j]);
2747857cbf51SRichard Tran Mills       }
2748857cbf51SRichard Tran Mills       a += m;
2749857cbf51SRichard Tran Mills     }
2750857cbf51SRichard Tran Mills   } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Unknown reduction type");
27519566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A,&a));
2752857cbf51SRichard Tran Mills   if (type == NORM_2) {
2753a873a8cdSSam Reynolds     for (i=0; i<n; i++) reductions[i] = PetscSqrtReal(reductions[i]);
2754857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
2755a873a8cdSSam Reynolds     for (i=0; i<n; i++) reductions[i] /= m;
27560716a85fSBarry Smith   }
27570716a85fSBarry Smith   PetscFunctionReturn(0);
27580716a85fSBarry Smith }
27590716a85fSBarry Smith 
276073a71a0fSBarry Smith static PetscErrorCode  MatSetRandom_SeqDense(Mat x,PetscRandom rctx)
276173a71a0fSBarry Smith {
276273a71a0fSBarry Smith   PetscScalar    *a;
2763637a0070SStefano Zampini   PetscInt       lda,m,n,i,j;
276473a71a0fSBarry Smith 
276573a71a0fSBarry Smith   PetscFunctionBegin;
27669566063dSJacob Faibussowitsch   PetscCall(MatGetSize(x,&m,&n));
27679566063dSJacob Faibussowitsch   PetscCall(MatDenseGetLDA(x,&lda));
27689566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(x,&a));
2769637a0070SStefano Zampini   for (j=0; j<n; j++) {
2770637a0070SStefano Zampini     for (i=0; i<m; i++) {
27719566063dSJacob Faibussowitsch       PetscCall(PetscRandomGetValue(rctx,a+j*lda+i));
2772637a0070SStefano Zampini     }
277373a71a0fSBarry Smith   }
27749566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(x,&a));
277573a71a0fSBarry Smith   PetscFunctionReturn(0);
277673a71a0fSBarry Smith }
277773a71a0fSBarry Smith 
27783b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_SeqDense(Mat A,PetscBool  *missing,PetscInt *d)
27793b49f96aSBarry Smith {
27803b49f96aSBarry Smith   PetscFunctionBegin;
27813b49f96aSBarry Smith   *missing = PETSC_FALSE;
27823b49f96aSBarry Smith   PetscFunctionReturn(0);
27833b49f96aSBarry Smith }
278473a71a0fSBarry Smith 
2785ca15aa20SStefano Zampini /* vals is not const */
2786af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_SeqDense(Mat A,PetscInt col,PetscScalar **vals)
278786aefd0dSHong Zhang {
278886aefd0dSHong Zhang   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
2789ca15aa20SStefano Zampini   PetscScalar    *v;
279086aefd0dSHong Zhang 
279186aefd0dSHong Zhang   PetscFunctionBegin;
279228b400f6SJacob Faibussowitsch   PetscCheck(!A->factortype,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
27939566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(A,&v));
2794ca15aa20SStefano Zampini   *vals = v+col*a->lda;
27959566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(A,&v));
279686aefd0dSHong Zhang   PetscFunctionReturn(0);
279786aefd0dSHong Zhang }
279886aefd0dSHong Zhang 
2799af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_SeqDense(Mat A,PetscScalar **vals)
280086aefd0dSHong Zhang {
280186aefd0dSHong Zhang   PetscFunctionBegin;
2802a5b23f4aSJose E. Roman   *vals = NULL; /* user cannot accidentally use the array later */
280386aefd0dSHong Zhang   PetscFunctionReturn(0);
280486aefd0dSHong Zhang }
2805abc3b08eSStefano Zampini 
2806289bc588SBarry Smith /* -------------------------------------------------------------------*/
2807a5ae1ecdSBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_SeqDense,
2808905e6a2fSBarry Smith                                         MatGetRow_SeqDense,
2809905e6a2fSBarry Smith                                         MatRestoreRow_SeqDense,
2810905e6a2fSBarry Smith                                         MatMult_SeqDense,
281197304618SKris Buschelman                                 /*  4*/ MatMultAdd_SeqDense,
28127c922b88SBarry Smith                                         MatMultTranspose_SeqDense,
28137c922b88SBarry Smith                                         MatMultTransposeAdd_SeqDense,
2814f4259b30SLisandro Dalcin                                         NULL,
2815f4259b30SLisandro Dalcin                                         NULL,
2816f4259b30SLisandro Dalcin                                         NULL,
2817f4259b30SLisandro Dalcin                                 /* 10*/ NULL,
2818905e6a2fSBarry Smith                                         MatLUFactor_SeqDense,
2819905e6a2fSBarry Smith                                         MatCholeskyFactor_SeqDense,
282041f059aeSBarry Smith                                         MatSOR_SeqDense,
2821ec8511deSBarry Smith                                         MatTranspose_SeqDense,
282297304618SKris Buschelman                                 /* 15*/ MatGetInfo_SeqDense,
2823905e6a2fSBarry Smith                                         MatEqual_SeqDense,
2824905e6a2fSBarry Smith                                         MatGetDiagonal_SeqDense,
2825905e6a2fSBarry Smith                                         MatDiagonalScale_SeqDense,
2826905e6a2fSBarry Smith                                         MatNorm_SeqDense,
2827c0aa2d19SHong Zhang                                 /* 20*/ MatAssemblyBegin_SeqDense,
2828c0aa2d19SHong Zhang                                         MatAssemblyEnd_SeqDense,
2829905e6a2fSBarry Smith                                         MatSetOption_SeqDense,
2830905e6a2fSBarry Smith                                         MatZeroEntries_SeqDense,
2831d519adbfSMatthew Knepley                                 /* 24*/ MatZeroRows_SeqDense,
2832f4259b30SLisandro Dalcin                                         NULL,
2833f4259b30SLisandro Dalcin                                         NULL,
2834f4259b30SLisandro Dalcin                                         NULL,
2835f4259b30SLisandro Dalcin                                         NULL,
28364994cf47SJed Brown                                 /* 29*/ MatSetUp_SeqDense,
2837f4259b30SLisandro Dalcin                                         NULL,
2838f4259b30SLisandro Dalcin                                         NULL,
2839f4259b30SLisandro Dalcin                                         NULL,
2840f4259b30SLisandro Dalcin                                         NULL,
2841d519adbfSMatthew Knepley                                 /* 34*/ MatDuplicate_SeqDense,
2842f4259b30SLisandro Dalcin                                         NULL,
2843f4259b30SLisandro Dalcin                                         NULL,
2844f4259b30SLisandro Dalcin                                         NULL,
2845f4259b30SLisandro Dalcin                                         NULL,
2846d519adbfSMatthew Knepley                                 /* 39*/ MatAXPY_SeqDense,
28477dae84e0SHong Zhang                                         MatCreateSubMatrices_SeqDense,
2848f4259b30SLisandro Dalcin                                         NULL,
28494b0e389bSBarry Smith                                         MatGetValues_SeqDense,
2850a5ae1ecdSBarry Smith                                         MatCopy_SeqDense,
2851d519adbfSMatthew Knepley                                 /* 44*/ MatGetRowMax_SeqDense,
2852a5ae1ecdSBarry Smith                                         MatScale_SeqDense,
28537d68702bSBarry Smith                                         MatShift_Basic,
2854f4259b30SLisandro Dalcin                                         NULL,
28553f49a652SStefano Zampini                                         MatZeroRowsColumns_SeqDense,
285673a71a0fSBarry Smith                                 /* 49*/ MatSetRandom_SeqDense,
2857f4259b30SLisandro Dalcin                                         NULL,
2858f4259b30SLisandro Dalcin                                         NULL,
2859f4259b30SLisandro Dalcin                                         NULL,
2860f4259b30SLisandro Dalcin                                         NULL,
2861f4259b30SLisandro Dalcin                                 /* 54*/ NULL,
2862f4259b30SLisandro Dalcin                                         NULL,
2863f4259b30SLisandro Dalcin                                         NULL,
2864f4259b30SLisandro Dalcin                                         NULL,
2865f4259b30SLisandro Dalcin                                         NULL,
2866023c16fcSToby Isaac                                 /* 59*/ MatCreateSubMatrix_SeqDense,
2867e03a110bSBarry Smith                                         MatDestroy_SeqDense,
2868e03a110bSBarry Smith                                         MatView_SeqDense,
2869f4259b30SLisandro Dalcin                                         NULL,
2870f4259b30SLisandro Dalcin                                         NULL,
2871f4259b30SLisandro Dalcin                                 /* 64*/ NULL,
2872f4259b30SLisandro Dalcin                                         NULL,
2873f4259b30SLisandro Dalcin                                         NULL,
2874f4259b30SLisandro Dalcin                                         NULL,
2875f4259b30SLisandro Dalcin                                         NULL,
2876d519adbfSMatthew Knepley                                 /* 69*/ MatGetRowMaxAbs_SeqDense,
2877f4259b30SLisandro Dalcin                                         NULL,
2878f4259b30SLisandro Dalcin                                         NULL,
2879f4259b30SLisandro Dalcin                                         NULL,
2880f4259b30SLisandro Dalcin                                         NULL,
2881f4259b30SLisandro Dalcin                                 /* 74*/ NULL,
2882f4259b30SLisandro Dalcin                                         NULL,
2883f4259b30SLisandro Dalcin                                         NULL,
2884f4259b30SLisandro Dalcin                                         NULL,
2885f4259b30SLisandro Dalcin                                         NULL,
2886f4259b30SLisandro Dalcin                                 /* 79*/ NULL,
2887f4259b30SLisandro Dalcin                                         NULL,
2888f4259b30SLisandro Dalcin                                         NULL,
2889f4259b30SLisandro Dalcin                                         NULL,
28905bba2384SShri Abhyankar                                 /* 83*/ MatLoad_SeqDense,
2891637a0070SStefano Zampini                                         MatIsSymmetric_SeqDense,
28921cbb95d3SBarry Smith                                         MatIsHermitian_SeqDense,
2893f4259b30SLisandro Dalcin                                         NULL,
2894f4259b30SLisandro Dalcin                                         NULL,
2895f4259b30SLisandro Dalcin                                         NULL,
2896f4259b30SLisandro Dalcin                                 /* 89*/ NULL,
2897f4259b30SLisandro Dalcin                                         NULL,
2898a9fe9ddaSSatish Balay                                         MatMatMultNumeric_SeqDense_SeqDense,
2899f4259b30SLisandro Dalcin                                         NULL,
2900f4259b30SLisandro Dalcin                                         NULL,
2901f4259b30SLisandro Dalcin                                 /* 94*/ NULL,
2902f4259b30SLisandro Dalcin                                         NULL,
2903f4259b30SLisandro Dalcin                                         NULL,
290469f65d41SStefano Zampini                                         MatMatTransposeMultNumeric_SeqDense_SeqDense,
2905f4259b30SLisandro Dalcin                                         NULL,
29064222ddf1SHong Zhang                                 /* 99*/ MatProductSetFromOptions_SeqDense,
2907f4259b30SLisandro Dalcin                                         NULL,
2908f4259b30SLisandro Dalcin                                         NULL,
2909ba337c44SJed Brown                                         MatConjugate_SeqDense,
2910f4259b30SLisandro Dalcin                                         NULL,
2911f4259b30SLisandro Dalcin                                 /*104*/ NULL,
2912ba337c44SJed Brown                                         MatRealPart_SeqDense,
2913ba337c44SJed Brown                                         MatImaginaryPart_SeqDense,
2914f4259b30SLisandro Dalcin                                         NULL,
2915f4259b30SLisandro Dalcin                                         NULL,
2916f4259b30SLisandro Dalcin                                 /*109*/ NULL,
2917f4259b30SLisandro Dalcin                                         NULL,
29188d0534beSBarry Smith                                         MatGetRowMin_SeqDense,
2919aabbc4fbSShri Abhyankar                                         MatGetColumnVector_SeqDense,
29203b49f96aSBarry Smith                                         MatMissingDiagonal_SeqDense,
2921f4259b30SLisandro Dalcin                                 /*114*/ NULL,
2922f4259b30SLisandro Dalcin                                         NULL,
2923f4259b30SLisandro Dalcin                                         NULL,
2924f4259b30SLisandro Dalcin                                         NULL,
2925f4259b30SLisandro Dalcin                                         NULL,
2926f4259b30SLisandro Dalcin                                 /*119*/ NULL,
2927f4259b30SLisandro Dalcin                                         NULL,
2928f4259b30SLisandro Dalcin                                         NULL,
2929f4259b30SLisandro Dalcin                                         NULL,
2930f4259b30SLisandro Dalcin                                         NULL,
2931f4259b30SLisandro Dalcin                                 /*124*/ NULL,
2932a873a8cdSSam Reynolds                                         MatGetColumnReductions_SeqDense,
2933f4259b30SLisandro Dalcin                                         NULL,
2934f4259b30SLisandro Dalcin                                         NULL,
2935f4259b30SLisandro Dalcin                                         NULL,
2936f4259b30SLisandro Dalcin                                 /*129*/ NULL,
2937f4259b30SLisandro Dalcin                                         NULL,
2938f4259b30SLisandro Dalcin                                         NULL,
293975648e8dSHong Zhang                                         MatTransposeMatMultNumeric_SeqDense_SeqDense,
2940f4259b30SLisandro Dalcin                                         NULL,
2941f4259b30SLisandro Dalcin                                 /*134*/ NULL,
2942f4259b30SLisandro Dalcin                                         NULL,
2943f4259b30SLisandro Dalcin                                         NULL,
2944f4259b30SLisandro Dalcin                                         NULL,
2945f4259b30SLisandro Dalcin                                         NULL,
2946f4259b30SLisandro Dalcin                                 /*139*/ NULL,
2947f4259b30SLisandro Dalcin                                         NULL,
2948f4259b30SLisandro Dalcin                                         NULL,
2949f4259b30SLisandro Dalcin                                         NULL,
2950f4259b30SLisandro Dalcin                                         NULL,
29514222ddf1SHong Zhang                                         MatCreateMPIMatConcatenateSeqMat_SeqDense,
2952f4259b30SLisandro Dalcin                                 /*145*/ NULL,
2953f4259b30SLisandro Dalcin                                         NULL,
2954f4259b30SLisandro Dalcin                                         NULL
2955985db425SBarry Smith };
295690ace30eSBarry Smith 
29574b828684SBarry Smith /*@C
2958fafbff53SBarry Smith    MatCreateSeqDense - Creates a sequential dense matrix that
2959d65003e9SLois Curfman McInnes    is stored in column major order (the usual Fortran 77 manner). Many
2960d65003e9SLois Curfman McInnes    of the matrix operations use the BLAS and LAPACK routines.
2961289bc588SBarry Smith 
2962d083f849SBarry Smith    Collective
2963db81eaa0SLois Curfman McInnes 
296420563c6bSBarry Smith    Input Parameters:
2965db81eaa0SLois Curfman McInnes +  comm - MPI communicator, set to PETSC_COMM_SELF
29660c775827SLois Curfman McInnes .  m - number of rows
296718f449edSLois Curfman McInnes .  n - number of columns
29680298fd71SBarry Smith -  data - optional location of matrix data in column major order.  Set data=NULL for PETSc
2969dfc5480cSLois Curfman McInnes    to control all matrix memory allocation.
297020563c6bSBarry Smith 
297120563c6bSBarry Smith    Output Parameter:
297244cd7ae7SLois Curfman McInnes .  A - the matrix
297320563c6bSBarry Smith 
2974b259b22eSLois Curfman McInnes    Notes:
297518f449edSLois Curfman McInnes    The data input variable is intended primarily for Fortran programmers
297618f449edSLois Curfman McInnes    who wish to allocate their own matrix memory space.  Most users should
29770298fd71SBarry Smith    set data=NULL.
297818f449edSLois Curfman McInnes 
2979027ccd11SLois Curfman McInnes    Level: intermediate
2980027ccd11SLois Curfman McInnes 
298169b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateDense(), MatSetValues()
298220563c6bSBarry Smith @*/
29837087cfbeSBarry Smith PetscErrorCode  MatCreateSeqDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscScalar *data,Mat *A)
2984289bc588SBarry Smith {
29853a40ed3dSBarry Smith   PetscFunctionBegin;
29869566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm,A));
29879566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A,m,n,m,n));
29889566063dSJacob Faibussowitsch   PetscCall(MatSetType(*A,MATSEQDENSE));
29899566063dSJacob Faibussowitsch   PetscCall(MatSeqDenseSetPreallocation(*A,data));
2990273d9f13SBarry Smith   PetscFunctionReturn(0);
2991273d9f13SBarry Smith }
2992273d9f13SBarry Smith 
2993273d9f13SBarry Smith /*@C
2994273d9f13SBarry Smith    MatSeqDenseSetPreallocation - Sets the array used for storing the matrix elements
2995273d9f13SBarry Smith 
2996d083f849SBarry Smith    Collective
2997273d9f13SBarry Smith 
2998273d9f13SBarry Smith    Input Parameters:
29991c4f3114SJed Brown +  B - the matrix
30000298fd71SBarry Smith -  data - the array (or NULL)
3001273d9f13SBarry Smith 
3002273d9f13SBarry Smith    Notes:
3003273d9f13SBarry Smith    The data input variable is intended primarily for Fortran programmers
3004273d9f13SBarry Smith    who wish to allocate their own matrix memory space.  Most users should
3005284134d9SBarry Smith    need not call this routine.
3006273d9f13SBarry Smith 
3007273d9f13SBarry Smith    Level: intermediate
3008273d9f13SBarry Smith 
3009ad16ce7aSStefano Zampini .seealso: MatCreate(), MatCreateDense(), MatSetValues(), MatDenseSetLDA()
3010867c911aSBarry Smith 
3011273d9f13SBarry Smith @*/
30127087cfbeSBarry Smith PetscErrorCode  MatSeqDenseSetPreallocation(Mat B,PetscScalar data[])
3013273d9f13SBarry Smith {
3014a23d5eceSKris Buschelman   PetscFunctionBegin;
3015d5ea218eSStefano Zampini   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
3016cac4c232SBarry Smith   PetscTryMethod(B,"MatSeqDenseSetPreallocation_C",(Mat,PetscScalar[]),(B,data));
3017a23d5eceSKris Buschelman   PetscFunctionReturn(0);
3018a23d5eceSKris Buschelman }
3019a23d5eceSKris Buschelman 
30207087cfbeSBarry Smith PetscErrorCode  MatSeqDenseSetPreallocation_SeqDense(Mat B,PetscScalar *data)
3021a23d5eceSKris Buschelman {
3022ad16ce7aSStefano Zampini   Mat_SeqDense   *b = (Mat_SeqDense*)B->data;
3023273d9f13SBarry Smith 
3024273d9f13SBarry Smith   PetscFunctionBegin;
302528b400f6SJacob Faibussowitsch   PetscCheck(!b->matinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
3026273d9f13SBarry Smith   B->preallocated = PETSC_TRUE;
3027a868139aSShri Abhyankar 
30289566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
30299566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
303034ef9618SShri Abhyankar 
3031ad16ce7aSStefano Zampini   if (b->lda <= 0) b->lda = B->rmap->n;
303286d161a7SShri Abhyankar 
30339e8f95c4SLisandro Dalcin   if (!data) { /* petsc-allocated storage */
30349566063dSJacob Faibussowitsch     if (!b->user_alloc) PetscCall(PetscFree(b->v));
30359566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1((size_t)b->lda*B->cmap->n,&b->v));
30369566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectMemory((PetscObject)B,b->lda*B->cmap->n*sizeof(PetscScalar)));
30372205254eSKarl Rupp 
30389e8f95c4SLisandro Dalcin     b->user_alloc = PETSC_FALSE;
3039273d9f13SBarry Smith   } else { /* user-allocated storage */
30409566063dSJacob Faibussowitsch     if (!b->user_alloc) PetscCall(PetscFree(b->v));
3041273d9f13SBarry Smith     b->v          = data;
3042273d9f13SBarry Smith     b->user_alloc = PETSC_TRUE;
3043273d9f13SBarry Smith   }
30440450473dSBarry Smith   B->assembled = PETSC_TRUE;
3045273d9f13SBarry Smith   PetscFunctionReturn(0);
3046273d9f13SBarry Smith }
3047273d9f13SBarry Smith 
304865b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
3049cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat)
30508baccfbdSHong Zhang {
3051d77f618aSHong Zhang   Mat               mat_elemental;
30521683a169SBarry Smith   const PetscScalar *array;
30531683a169SBarry Smith   PetscScalar       *v_colwise;
3054d77f618aSHong Zhang   PetscInt          M=A->rmap->N,N=A->cmap->N,i,j,k,*rows,*cols;
3055d77f618aSHong Zhang 
30568baccfbdSHong Zhang   PetscFunctionBegin;
30579566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(M*N,&v_colwise,M,&rows,N,&cols));
30589566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A,&array));
3059d77f618aSHong Zhang   /* convert column-wise array into row-wise v_colwise, see MatSetValues_Elemental() */
3060d77f618aSHong Zhang   k = 0;
3061d77f618aSHong Zhang   for (j=0; j<N; j++) {
3062d77f618aSHong Zhang     cols[j] = j;
3063d77f618aSHong Zhang     for (i=0; i<M; i++) {
3064d77f618aSHong Zhang       v_colwise[j*M+i] = array[k++];
3065d77f618aSHong Zhang     }
3066d77f618aSHong Zhang   }
3067d77f618aSHong Zhang   for (i=0; i<M; i++) {
3068d77f618aSHong Zhang     rows[i] = i;
3069d77f618aSHong Zhang   }
30709566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A,&array));
3071d77f618aSHong Zhang 
30729566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental));
30739566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,M,N));
30749566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat_elemental,MATELEMENTAL));
30759566063dSJacob Faibussowitsch   PetscCall(MatSetUp(mat_elemental));
3076d77f618aSHong Zhang 
3077d77f618aSHong Zhang   /* PETSc-Elemental interaface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */
30789566063dSJacob Faibussowitsch   PetscCall(MatSetValues(mat_elemental,M,rows,N,cols,v_colwise,ADD_VALUES));
30799566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY));
30809566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY));
30819566063dSJacob Faibussowitsch   PetscCall(PetscFree3(v_colwise,rows,cols));
3082d77f618aSHong Zhang 
3083511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
30849566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A,&mat_elemental));
3085d77f618aSHong Zhang   } else {
3086d77f618aSHong Zhang     *newmat = mat_elemental;
3087d77f618aSHong Zhang   }
30888baccfbdSHong Zhang   PetscFunctionReturn(0);
30898baccfbdSHong Zhang }
309065b80a83SHong Zhang #endif
30918baccfbdSHong Zhang 
309217359960SJose E. Roman PetscErrorCode  MatDenseSetLDA_SeqDense(Mat B,PetscInt lda)
30931b807ce4Svictorle {
30941b807ce4Svictorle   Mat_SeqDense *b = (Mat_SeqDense*)B->data;
30957422da62SJose E. Roman   PetscBool    data;
309621a2c019SBarry Smith 
30971b807ce4Svictorle   PetscFunctionBegin;
30987422da62SJose E. Roman   data = (PetscBool)((B->rmap->n > 0 && B->cmap->n > 0) ? (b->v ? PETSC_TRUE : PETSC_FALSE) : PETSC_FALSE);
30992c71b3e2SJacob Faibussowitsch   PetscCheckFalse(!b->user_alloc && data && b->lda!=lda,PETSC_COMM_SELF,PETSC_ERR_ORDER,"LDA cannot be changed after allocation of internal storage");
31002c71b3e2SJacob Faibussowitsch   PetscCheckFalse(lda < B->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"LDA %" PetscInt_FMT " must be at least matrix dimension %" PetscInt_FMT,lda,B->rmap->n);
31011b807ce4Svictorle   b->lda = lda;
31021b807ce4Svictorle   PetscFunctionReturn(0);
31031b807ce4Svictorle }
31041b807ce4Svictorle 
3105d528f656SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_SeqDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
3106d528f656SJakub Kruzik {
3107d528f656SJakub Kruzik   PetscMPIInt    size;
3108d528f656SJakub Kruzik 
3109d528f656SJakub Kruzik   PetscFunctionBegin;
31109566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
3111d528f656SJakub Kruzik   if (size == 1) {
3112d528f656SJakub Kruzik     if (scall == MAT_INITIAL_MATRIX) {
31139566063dSJacob Faibussowitsch       PetscCall(MatDuplicate(inmat,MAT_COPY_VALUES,outmat));
3114d528f656SJakub Kruzik     } else {
31159566063dSJacob Faibussowitsch       PetscCall(MatCopy(inmat,*outmat,SAME_NONZERO_PATTERN));
3116d528f656SJakub Kruzik     }
3117d528f656SJakub Kruzik   } else {
31189566063dSJacob Faibussowitsch     PetscCall(MatCreateMPIMatConcatenateSeqMat_MPIDense(comm,inmat,n,scall,outmat));
3119d528f656SJakub Kruzik   }
3120d528f656SJakub Kruzik   PetscFunctionReturn(0);
3121d528f656SJakub Kruzik }
3122d528f656SJakub Kruzik 
31236947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec_SeqDense(Mat A,PetscInt col,Vec *v)
31246947451fSStefano Zampini {
31256947451fSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
31266947451fSStefano Zampini 
31276947451fSStefano Zampini   PetscFunctionBegin;
312828b400f6SJacob Faibussowitsch   PetscCheck(!a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
312928b400f6SJacob Faibussowitsch   PetscCheck(!a->matinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
31306947451fSStefano Zampini   if (!a->cvec) {
31319566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,NULL,&a->cvec));
31329566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec));
31336947451fSStefano Zampini   }
31346947451fSStefano Zampini   a->vecinuse = col + 1;
31359566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(A,(PetscScalar**)&a->ptrinuse));
31369566063dSJacob Faibussowitsch   PetscCall(VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)a->lda));
31376947451fSStefano Zampini   *v   = a->cvec;
31386947451fSStefano Zampini   PetscFunctionReturn(0);
31396947451fSStefano Zampini }
31406947451fSStefano Zampini 
31416947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec_SeqDense(Mat A,PetscInt col,Vec *v)
31426947451fSStefano Zampini {
31436947451fSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
31446947451fSStefano Zampini 
31456947451fSStefano Zampini   PetscFunctionBegin;
314628b400f6SJacob Faibussowitsch   PetscCheck(a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first");
314728b400f6SJacob Faibussowitsch   PetscCheck(a->cvec,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector");
31486947451fSStefano Zampini   a->vecinuse = 0;
31499566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(A,(PetscScalar**)&a->ptrinuse));
31509566063dSJacob Faibussowitsch   PetscCall(VecResetArray(a->cvec));
315175f6d85dSStefano Zampini   if (v) *v = NULL;
31526947451fSStefano Zampini   PetscFunctionReturn(0);
31536947451fSStefano Zampini }
31546947451fSStefano Zampini 
31556947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead_SeqDense(Mat A,PetscInt col,Vec *v)
31566947451fSStefano Zampini {
31576947451fSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
31586947451fSStefano Zampini 
31596947451fSStefano Zampini   PetscFunctionBegin;
316028b400f6SJacob Faibussowitsch   PetscCheck(!a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
316128b400f6SJacob Faibussowitsch   PetscCheck(!a->matinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
31626947451fSStefano Zampini   if (!a->cvec) {
31639566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,NULL,&a->cvec));
31649566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec));
31656947451fSStefano Zampini   }
31666947451fSStefano Zampini   a->vecinuse = col + 1;
31679566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(A,&a->ptrinuse));
31689566063dSJacob Faibussowitsch   PetscCall(VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)a->lda));
31699566063dSJacob Faibussowitsch   PetscCall(VecLockReadPush(a->cvec));
31706947451fSStefano Zampini   *v   = a->cvec;
31716947451fSStefano Zampini   PetscFunctionReturn(0);
31726947451fSStefano Zampini }
31736947451fSStefano Zampini 
31746947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead_SeqDense(Mat A,PetscInt col,Vec *v)
31756947451fSStefano Zampini {
31766947451fSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
31776947451fSStefano Zampini 
31786947451fSStefano Zampini   PetscFunctionBegin;
317928b400f6SJacob Faibussowitsch   PetscCheck(a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first");
318028b400f6SJacob Faibussowitsch   PetscCheck(a->cvec,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector");
31816947451fSStefano Zampini   a->vecinuse = 0;
31829566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(A,&a->ptrinuse));
31839566063dSJacob Faibussowitsch   PetscCall(VecLockReadPop(a->cvec));
31849566063dSJacob Faibussowitsch   PetscCall(VecResetArray(a->cvec));
318575f6d85dSStefano Zampini   if (v) *v = NULL;
31866947451fSStefano Zampini   PetscFunctionReturn(0);
31876947451fSStefano Zampini }
31886947451fSStefano Zampini 
31896947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite_SeqDense(Mat A,PetscInt col,Vec *v)
31906947451fSStefano Zampini {
31916947451fSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
31926947451fSStefano Zampini 
31936947451fSStefano Zampini   PetscFunctionBegin;
319428b400f6SJacob Faibussowitsch   PetscCheck(!a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
319528b400f6SJacob Faibussowitsch   PetscCheck(!a->matinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
31966947451fSStefano Zampini   if (!a->cvec) {
31979566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,NULL,&a->cvec));
31989566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec));
31996947451fSStefano Zampini   }
32006947451fSStefano Zampini   a->vecinuse = col + 1;
32019566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayWrite(A,(PetscScalar**)&a->ptrinuse));
32029566063dSJacob Faibussowitsch   PetscCall(VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)a->lda));
32036947451fSStefano Zampini   *v   = a->cvec;
32046947451fSStefano Zampini   PetscFunctionReturn(0);
32056947451fSStefano Zampini }
32066947451fSStefano Zampini 
32076947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite_SeqDense(Mat A,PetscInt col,Vec *v)
32086947451fSStefano Zampini {
32096947451fSStefano Zampini   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
32106947451fSStefano Zampini 
32116947451fSStefano Zampini   PetscFunctionBegin;
321228b400f6SJacob Faibussowitsch   PetscCheck(a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first");
321328b400f6SJacob Faibussowitsch   PetscCheck(a->cvec,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector");
32146947451fSStefano Zampini   a->vecinuse = 0;
32159566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayWrite(A,(PetscScalar**)&a->ptrinuse));
32169566063dSJacob Faibussowitsch   PetscCall(VecResetArray(a->cvec));
321775f6d85dSStefano Zampini   if (v) *v = NULL;
32186947451fSStefano Zampini   PetscFunctionReturn(0);
32196947451fSStefano Zampini }
32206947451fSStefano Zampini 
32215ea7661aSPierre Jolivet PetscErrorCode MatDenseGetSubMatrix_SeqDense(Mat A,PetscInt cbegin,PetscInt cend,Mat *v)
32225ea7661aSPierre Jolivet {
32235ea7661aSPierre Jolivet   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
32245ea7661aSPierre Jolivet 
32255ea7661aSPierre Jolivet   PetscFunctionBegin;
322628b400f6SJacob Faibussowitsch   PetscCheck(!a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
322728b400f6SJacob Faibussowitsch   PetscCheck(!a->matinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
32285ea7661aSPierre Jolivet   if (a->cmat && cend-cbegin != a->cmat->cmap->N) {
32299566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&a->cmat));
32305ea7661aSPierre Jolivet   }
32315ea7661aSPierre Jolivet   if (!a->cmat) {
32329566063dSJacob Faibussowitsch     PetscCall(MatCreateDense(PetscObjectComm((PetscObject)A),A->rmap->n,PETSC_DECIDE,A->rmap->N,cend-cbegin,a->v+(size_t)cbegin*a->lda,&a->cmat));
32339566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cmat));
32345ea7661aSPierre Jolivet   } else {
32359566063dSJacob Faibussowitsch     PetscCall(MatDensePlaceArray(a->cmat,a->v+(size_t)cbegin*a->lda));
32365ea7661aSPierre Jolivet   }
32379566063dSJacob Faibussowitsch   PetscCall(MatDenseSetLDA(a->cmat,a->lda));
32385ea7661aSPierre Jolivet   a->matinuse = cbegin + 1;
32395ea7661aSPierre Jolivet   *v = a->cmat;
324075f6d85dSStefano Zampini #if defined(PETSC_HAVE_CUDA)
324175f6d85dSStefano Zampini   A->offloadmask = PETSC_OFFLOAD_CPU;
324275f6d85dSStefano Zampini #endif
32435ea7661aSPierre Jolivet   PetscFunctionReturn(0);
32445ea7661aSPierre Jolivet }
32455ea7661aSPierre Jolivet 
32465ea7661aSPierre Jolivet PetscErrorCode MatDenseRestoreSubMatrix_SeqDense(Mat A,Mat *v)
32475ea7661aSPierre Jolivet {
32485ea7661aSPierre Jolivet   Mat_SeqDense   *a = (Mat_SeqDense*)A->data;
32495ea7661aSPierre Jolivet 
32505ea7661aSPierre Jolivet   PetscFunctionBegin;
325128b400f6SJacob Faibussowitsch   PetscCheck(a->matinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetSubMatrix() first");
325228b400f6SJacob Faibussowitsch   PetscCheck(a->cmat,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column matrix");
32532c71b3e2SJacob Faibussowitsch   PetscCheckFalse(*v != a->cmat,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Not the matrix obtained from MatDenseGetSubMatrix()");
32545ea7661aSPierre Jolivet   a->matinuse = 0;
32559566063dSJacob Faibussowitsch   PetscCall(MatDenseResetArray(a->cmat));
32565ea7661aSPierre Jolivet   *v   = NULL;
32575ea7661aSPierre Jolivet   PetscFunctionReturn(0);
32585ea7661aSPierre Jolivet }
32595ea7661aSPierre Jolivet 
32600bad9183SKris Buschelman /*MC
3261fafad747SKris Buschelman    MATSEQDENSE - MATSEQDENSE = "seqdense" - A matrix type to be used for sequential dense matrices.
32620bad9183SKris Buschelman 
32630bad9183SKris Buschelman    Options Database Keys:
32640bad9183SKris Buschelman . -mat_type seqdense - sets the matrix type to "seqdense" during a call to MatSetFromOptions()
32650bad9183SKris Buschelman 
32660bad9183SKris Buschelman   Level: beginner
32670bad9183SKris Buschelman 
326889665df3SBarry Smith .seealso: MatCreateSeqDense()
326989665df3SBarry Smith 
32700bad9183SKris Buschelman M*/
3271ca15aa20SStefano Zampini PetscErrorCode MatCreate_SeqDense(Mat B)
3272273d9f13SBarry Smith {
3273273d9f13SBarry Smith   Mat_SeqDense   *b;
32747c334f02SBarry Smith   PetscMPIInt    size;
3275273d9f13SBarry Smith 
3276273d9f13SBarry Smith   PetscFunctionBegin;
32779566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B),&size));
32782c71b3e2SJacob Faibussowitsch   PetscCheckFalse(size > 1,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Comm must be of size 1");
327955659b69SBarry Smith 
32809566063dSJacob Faibussowitsch   PetscCall(PetscNewLog(B,&b));
32819566063dSJacob Faibussowitsch   PetscCall(PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps)));
328244cd7ae7SLois Curfman McInnes   B->data = (void*)b;
328318f449edSLois Curfman McInnes 
3284273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
32854e220ebcSLois Curfman McInnes 
32869566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatQRFactor_C",MatQRFactor_SeqDense));
32879566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseGetLDA_C",MatDenseGetLDA_SeqDense));
32889566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseSetLDA_C",MatDenseSetLDA_SeqDense));
32899566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseGetArray_C",MatDenseGetArray_SeqDense));
32909566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreArray_C",MatDenseRestoreArray_SeqDense));
32919566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDensePlaceArray_C",MatDensePlaceArray_SeqDense));
32929566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseResetArray_C",MatDenseResetArray_SeqDense));
32939566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseReplaceArray_C",MatDenseReplaceArray_SeqDense));
32949566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseGetArrayRead_C",MatDenseGetArray_SeqDense));
32959566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreArrayRead_C",MatDenseRestoreArray_SeqDense));
32969566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseGetArrayWrite_C",MatDenseGetArray_SeqDense));
32979566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreArrayWrite_C",MatDenseRestoreArray_SeqDense));
32989566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqdense_seqaij_C",MatConvert_SeqDense_SeqAIJ));
32998baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
33009566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqdense_elemental_C",MatConvert_SeqDense_Elemental));
33018baccfbdSHong Zhang #endif
3302d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
33039566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqdense_scalapack_C",MatConvert_Dense_ScaLAPACK));
3304d24d4204SJose E. Roman #endif
33052bf066beSStefano Zampini #if defined(PETSC_HAVE_CUDA)
33069566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqdense_seqdensecuda_C",MatConvert_SeqDense_SeqDenseCUDA));
33079566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqdensecuda_seqdensecuda_C",MatProductSetFromOptions_SeqDense));
33089566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqdensecuda_seqdense_C",MatProductSetFromOptions_SeqDense));
33099566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqdense_seqdensecuda_C",MatProductSetFromOptions_SeqDense));
33102bf066beSStefano Zampini #endif
33119566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatSeqDenseSetPreallocation_C",MatSeqDenseSetPreallocation_SeqDense));
33129566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqaij_seqdense_C",MatProductSetFromOptions_SeqAIJ_SeqDense));
33139566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqdense_seqdense_C",MatProductSetFromOptions_SeqDense));
33149566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqbaij_seqdense_C",MatProductSetFromOptions_SeqXBAIJ_SeqDense));
33159566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_seqsbaij_seqdense_C",MatProductSetFromOptions_SeqXBAIJ_SeqDense));
331696e6d5c4SRichard Tran Mills 
33179566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseGetColumn_C",MatDenseGetColumn_SeqDense));
33189566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_SeqDense));
33199566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_SeqDense));
33209566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_SeqDense));
33219566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_SeqDense));
33229566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_SeqDense));
33239566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_SeqDense));
33249566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_SeqDense));
33259566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseGetSubMatrix_C",MatDenseGetSubMatrix_SeqDense));
33269566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseRestoreSubMatrix_C",MatDenseRestoreSubMatrix_SeqDense));
33279566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATSEQDENSE));
33283a40ed3dSBarry Smith   PetscFunctionReturn(0);
3329289bc588SBarry Smith }
333086aefd0dSHong Zhang 
333186aefd0dSHong Zhang /*@C
3332af53bab2SHong Zhang    MatDenseGetColumn - gives access to a column of a dense matrix. This is only the local part of the column. You MUST call MatDenseRestoreColumn() to avoid memory bleeding.
333386aefd0dSHong Zhang 
333486aefd0dSHong Zhang    Not Collective
333586aefd0dSHong Zhang 
33365ea7661aSPierre Jolivet    Input Parameters:
333786aefd0dSHong Zhang +  mat - a MATSEQDENSE or MATMPIDENSE matrix
333886aefd0dSHong Zhang -  col - column index
333986aefd0dSHong Zhang 
334086aefd0dSHong Zhang    Output Parameter:
334186aefd0dSHong Zhang .  vals - pointer to the data
334286aefd0dSHong Zhang 
334386aefd0dSHong Zhang    Level: intermediate
334486aefd0dSHong Zhang 
334586aefd0dSHong Zhang .seealso: MatDenseRestoreColumn()
334686aefd0dSHong Zhang @*/
334786aefd0dSHong Zhang PetscErrorCode MatDenseGetColumn(Mat A,PetscInt col,PetscScalar **vals)
334886aefd0dSHong Zhang {
334986aefd0dSHong Zhang   PetscFunctionBegin;
3350d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
3351d5ea218eSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
3352d5ea218eSStefano Zampini   PetscValidPointer(vals,3);
3353cac4c232SBarry Smith   PetscUseMethod(A,"MatDenseGetColumn_C",(Mat,PetscInt,PetscScalar**),(A,col,vals));
335486aefd0dSHong Zhang   PetscFunctionReturn(0);
335586aefd0dSHong Zhang }
335686aefd0dSHong Zhang 
335786aefd0dSHong Zhang /*@C
335886aefd0dSHong Zhang    MatDenseRestoreColumn - returns access to a column of a dense matrix which is returned by MatDenseGetColumn().
335986aefd0dSHong Zhang 
336086aefd0dSHong Zhang    Not Collective
336186aefd0dSHong Zhang 
336286aefd0dSHong Zhang    Input Parameter:
336386aefd0dSHong Zhang .  mat - a MATSEQDENSE or MATMPIDENSE matrix
336486aefd0dSHong Zhang 
336586aefd0dSHong Zhang    Output Parameter:
336686aefd0dSHong Zhang .  vals - pointer to the data
336786aefd0dSHong Zhang 
336886aefd0dSHong Zhang    Level: intermediate
336986aefd0dSHong Zhang 
337086aefd0dSHong Zhang .seealso: MatDenseGetColumn()
337186aefd0dSHong Zhang @*/
337286aefd0dSHong Zhang PetscErrorCode MatDenseRestoreColumn(Mat A,PetscScalar **vals)
337386aefd0dSHong Zhang {
337486aefd0dSHong Zhang   PetscFunctionBegin;
3375d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
3376d5ea218eSStefano Zampini   PetscValidPointer(vals,2);
3377cac4c232SBarry Smith   PetscUseMethod(A,"MatDenseRestoreColumn_C",(Mat,PetscScalar**),(A,vals));
337886aefd0dSHong Zhang   PetscFunctionReturn(0);
337986aefd0dSHong Zhang }
33806947451fSStefano Zampini 
33810f74d2c1SSatish Balay /*@
33826947451fSStefano Zampini    MatDenseGetColumnVec - Gives read-write access to a column of a dense matrix, represented as a Vec.
33836947451fSStefano Zampini 
33846947451fSStefano Zampini    Collective
33856947451fSStefano Zampini 
33865ea7661aSPierre Jolivet    Input Parameters:
33876947451fSStefano Zampini +  mat - the Mat object
33886947451fSStefano Zampini -  col - the column index
33896947451fSStefano Zampini 
33906947451fSStefano Zampini    Output Parameter:
33916947451fSStefano Zampini .  v - the vector
33926947451fSStefano Zampini 
33936947451fSStefano Zampini    Notes:
33946947451fSStefano Zampini      The vector is owned by PETSc. Users need to call MatDenseRestoreColumnVec() when the vector is no longer needed.
33956947451fSStefano Zampini      Use MatDenseGetColumnVecRead() to obtain read-only access or MatDenseGetColumnVecWrite() for write-only access.
33966947451fSStefano Zampini 
33976947451fSStefano Zampini    Level: intermediate
33986947451fSStefano Zampini 
33996947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVecRead(), MatDenseGetColumnVecWrite(), MatDenseRestoreColumnVec(), MatDenseRestoreColumnVecRead(), MatDenseRestoreColumnVecWrite()
34006947451fSStefano Zampini @*/
34016947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec(Mat A,PetscInt col,Vec *v)
34026947451fSStefano Zampini {
34036947451fSStefano Zampini   PetscFunctionBegin;
34046947451fSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
34056947451fSStefano Zampini   PetscValidType(A,1);
34066947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
34076947451fSStefano Zampini   PetscValidPointer(v,3);
340828b400f6SJacob Faibussowitsch   PetscCheck(A->preallocated,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
34092c71b3e2SJacob Faibussowitsch   PetscCheckFalse(col < 0 || col > A->cmap->N,PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %" PetscInt_FMT ", should be in [0,%" PetscInt_FMT ")",col,A->cmap->N);
3410cac4c232SBarry Smith   PetscUseMethod(A,"MatDenseGetColumnVec_C",(Mat,PetscInt,Vec*),(A,col,v));
34116947451fSStefano Zampini   PetscFunctionReturn(0);
34126947451fSStefano Zampini }
34136947451fSStefano Zampini 
34140f74d2c1SSatish Balay /*@
34156947451fSStefano Zampini    MatDenseRestoreColumnVec - Returns access to a column of a dense matrix obtained from MatDenseGetColumnVec().
34166947451fSStefano Zampini 
34176947451fSStefano Zampini    Collective
34186947451fSStefano Zampini 
34195ea7661aSPierre Jolivet    Input Parameters:
34206947451fSStefano Zampini +  mat - the Mat object
34216947451fSStefano Zampini .  col - the column index
34226947451fSStefano Zampini -  v - the Vec object
34236947451fSStefano Zampini 
34246947451fSStefano Zampini    Level: intermediate
34256947451fSStefano Zampini 
34266947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseGetColumnVecRead(), MatDenseGetColumnVecWrite(), MatDenseRestoreColumnVecRead(), MatDenseRestoreColumnVecWrite()
34276947451fSStefano Zampini @*/
34286947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec(Mat A,PetscInt col,Vec *v)
34296947451fSStefano Zampini {
34306947451fSStefano Zampini   PetscFunctionBegin;
34316947451fSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
34326947451fSStefano Zampini   PetscValidType(A,1);
34336947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
34342c71b3e2SJacob Faibussowitsch   PetscCheckFalse(!A->preallocated,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
34352c71b3e2SJacob Faibussowitsch   PetscCheckFalse(col < 0 || col > A->cmap->N,PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %" PetscInt_FMT ", should be in [0,%" PetscInt_FMT ")",col,A->cmap->N);
3436cac4c232SBarry Smith   PetscUseMethod(A,"MatDenseRestoreColumnVec_C",(Mat,PetscInt,Vec*),(A,col,v));
34376947451fSStefano Zampini   PetscFunctionReturn(0);
34386947451fSStefano Zampini }
34396947451fSStefano Zampini 
34400f74d2c1SSatish Balay /*@
34416947451fSStefano Zampini    MatDenseGetColumnVecRead - Gives read-only access to a column of a dense matrix, represented as a Vec.
34426947451fSStefano Zampini 
34436947451fSStefano Zampini    Collective
34446947451fSStefano Zampini 
34455ea7661aSPierre Jolivet    Input Parameters:
34466947451fSStefano Zampini +  mat - the Mat object
34476947451fSStefano Zampini -  col - the column index
34486947451fSStefano Zampini 
34496947451fSStefano Zampini    Output Parameter:
34506947451fSStefano Zampini .  v - the vector
34516947451fSStefano Zampini 
34526947451fSStefano Zampini    Notes:
34536947451fSStefano Zampini      The vector is owned by PETSc and users cannot modify it.
34546947451fSStefano Zampini      Users need to call MatDenseRestoreColumnVecRead() when the vector is no longer needed.
34556947451fSStefano Zampini      Use MatDenseGetColumnVec() to obtain read-write access or MatDenseGetColumnVecWrite() for write-only access.
34566947451fSStefano Zampini 
34576947451fSStefano Zampini    Level: intermediate
34586947451fSStefano Zampini 
34596947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseGetColumnVecWrite(), MatDenseRestoreColumnVec(), MatDenseRestoreColumnVecRead(), MatDenseRestoreColumnVecWrite()
34606947451fSStefano Zampini @*/
34616947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead(Mat A,PetscInt col,Vec *v)
34626947451fSStefano Zampini {
34636947451fSStefano Zampini   PetscFunctionBegin;
34646947451fSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
34656947451fSStefano Zampini   PetscValidType(A,1);
34666947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
34676947451fSStefano Zampini   PetscValidPointer(v,3);
346828b400f6SJacob Faibussowitsch   PetscCheck(A->preallocated,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
34692c71b3e2SJacob Faibussowitsch   PetscCheckFalse(col < 0 || col > A->cmap->N,PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %" PetscInt_FMT ", should be in [0,%" PetscInt_FMT ")",col,A->cmap->N);
3470cac4c232SBarry Smith   PetscUseMethod(A,"MatDenseGetColumnVecRead_C",(Mat,PetscInt,Vec*),(A,col,v));
34716947451fSStefano Zampini   PetscFunctionReturn(0);
34726947451fSStefano Zampini }
34736947451fSStefano Zampini 
34740f74d2c1SSatish Balay /*@
34756947451fSStefano Zampini    MatDenseRestoreColumnVecRead - Returns access to a column of a dense matrix obtained from MatDenseGetColumnVecRead().
34766947451fSStefano Zampini 
34776947451fSStefano Zampini    Collective
34786947451fSStefano Zampini 
34795ea7661aSPierre Jolivet    Input Parameters:
34806947451fSStefano Zampini +  mat - the Mat object
34816947451fSStefano Zampini .  col - the column index
34826947451fSStefano Zampini -  v - the Vec object
34836947451fSStefano Zampini 
34846947451fSStefano Zampini    Level: intermediate
34856947451fSStefano Zampini 
34866947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseGetColumnVecRead(), MatDenseGetColumnVecWrite(), MatDenseRestoreColumnVec(), MatDenseRestoreColumnVecWrite()
34876947451fSStefano Zampini @*/
34886947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead(Mat A,PetscInt col,Vec *v)
34896947451fSStefano Zampini {
34906947451fSStefano Zampini   PetscFunctionBegin;
34916947451fSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
34926947451fSStefano Zampini   PetscValidType(A,1);
34936947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
34942c71b3e2SJacob Faibussowitsch   PetscCheckFalse(!A->preallocated,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
34952c71b3e2SJacob Faibussowitsch   PetscCheckFalse(col < 0 || col > A->cmap->N,PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %" PetscInt_FMT ", should be in [0,%" PetscInt_FMT ")",col,A->cmap->N);
3496cac4c232SBarry Smith   PetscUseMethod(A,"MatDenseRestoreColumnVecRead_C",(Mat,PetscInt,Vec*),(A,col,v));
34976947451fSStefano Zampini   PetscFunctionReturn(0);
34986947451fSStefano Zampini }
34996947451fSStefano Zampini 
35000f74d2c1SSatish Balay /*@
35016947451fSStefano Zampini    MatDenseGetColumnVecWrite - Gives write-only access to a column of a dense matrix, represented as a Vec.
35026947451fSStefano Zampini 
35036947451fSStefano Zampini    Collective
35046947451fSStefano Zampini 
35055ea7661aSPierre Jolivet    Input Parameters:
35066947451fSStefano Zampini +  mat - the Mat object
35076947451fSStefano Zampini -  col - the column index
35086947451fSStefano Zampini 
35096947451fSStefano Zampini    Output Parameter:
35106947451fSStefano Zampini .  v - the vector
35116947451fSStefano Zampini 
35126947451fSStefano Zampini    Notes:
35136947451fSStefano Zampini      The vector is owned by PETSc. Users need to call MatDenseRestoreColumnVecWrite() when the vector is no longer needed.
35146947451fSStefano Zampini      Use MatDenseGetColumnVec() to obtain read-write access or MatDenseGetColumnVecRead() for read-only access.
35156947451fSStefano Zampini 
35166947451fSStefano Zampini    Level: intermediate
35176947451fSStefano Zampini 
35186947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseGetColumnVecRead(), MatDenseRestoreColumnVec(), MatDenseRestoreColumnVecRead(), MatDenseRestoreColumnVecWrite()
35196947451fSStefano Zampini @*/
35206947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite(Mat A,PetscInt col,Vec *v)
35216947451fSStefano Zampini {
35226947451fSStefano Zampini   PetscFunctionBegin;
35236947451fSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
35246947451fSStefano Zampini   PetscValidType(A,1);
35256947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
35266947451fSStefano Zampini   PetscValidPointer(v,3);
352728b400f6SJacob Faibussowitsch   PetscCheck(A->preallocated,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
35282c71b3e2SJacob Faibussowitsch   PetscCheckFalse(col < 0 || col > A->cmap->N,PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %" PetscInt_FMT ", should be in [0,%" PetscInt_FMT ")",col,A->cmap->N);
3529cac4c232SBarry Smith   PetscUseMethod(A,"MatDenseGetColumnVecWrite_C",(Mat,PetscInt,Vec*),(A,col,v));
35306947451fSStefano Zampini   PetscFunctionReturn(0);
35316947451fSStefano Zampini }
35326947451fSStefano Zampini 
35330f74d2c1SSatish Balay /*@
35346947451fSStefano Zampini    MatDenseRestoreColumnVecWrite - Returns access to a column of a dense matrix obtained from MatDenseGetColumnVecWrite().
35356947451fSStefano Zampini 
35366947451fSStefano Zampini    Collective
35376947451fSStefano Zampini 
35385ea7661aSPierre Jolivet    Input Parameters:
35396947451fSStefano Zampini +  mat - the Mat object
35406947451fSStefano Zampini .  col - the column index
35416947451fSStefano Zampini -  v - the Vec object
35426947451fSStefano Zampini 
35436947451fSStefano Zampini    Level: intermediate
35446947451fSStefano Zampini 
35456947451fSStefano Zampini .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseGetColumnVecRead(), MatDenseGetColumnVecWrite(), MatDenseRestoreColumnVec(), MatDenseRestoreColumnVecRead()
35466947451fSStefano Zampini @*/
35476947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite(Mat A,PetscInt col,Vec *v)
35486947451fSStefano Zampini {
35496947451fSStefano Zampini   PetscFunctionBegin;
35506947451fSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
35516947451fSStefano Zampini   PetscValidType(A,1);
35526947451fSStefano Zampini   PetscValidLogicalCollectiveInt(A,col,2);
35532c71b3e2SJacob Faibussowitsch   PetscCheckFalse(!A->preallocated,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
35542c71b3e2SJacob Faibussowitsch   PetscCheckFalse(col < 0 || col > A->cmap->N,PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid col %" PetscInt_FMT ", should be in [0,%" PetscInt_FMT ")",col,A->cmap->N);
3555cac4c232SBarry Smith   PetscUseMethod(A,"MatDenseRestoreColumnVecWrite_C",(Mat,PetscInt,Vec*),(A,col,v));
35566947451fSStefano Zampini   PetscFunctionReturn(0);
35576947451fSStefano Zampini }
35585ea7661aSPierre Jolivet 
35590f74d2c1SSatish Balay /*@
35605ea7661aSPierre Jolivet    MatDenseGetSubMatrix - Gives access to a block of columns of a dense matrix, represented as a Mat.
35615ea7661aSPierre Jolivet 
35625ea7661aSPierre Jolivet    Collective
35635ea7661aSPierre Jolivet 
35645ea7661aSPierre Jolivet    Input Parameters:
35655ea7661aSPierre Jolivet +  mat - the Mat object
35665ea7661aSPierre Jolivet .  cbegin - the first index in the block
35675ea7661aSPierre Jolivet -  cend - the last index in the block
35685ea7661aSPierre Jolivet 
35695ea7661aSPierre Jolivet    Output Parameter:
35705ea7661aSPierre Jolivet .  v - the matrix
35715ea7661aSPierre Jolivet 
35725ea7661aSPierre Jolivet    Notes:
35735ea7661aSPierre Jolivet      The matrix is owned by PETSc. Users need to call MatDenseRestoreSubMatrix() when the matrix is no longer needed.
35745ea7661aSPierre Jolivet 
35755ea7661aSPierre Jolivet    Level: intermediate
35765ea7661aSPierre Jolivet 
35775ea7661aSPierre Jolivet .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseRestoreColumnVec(), MatDenseRestoreSubMatrix()
35785ea7661aSPierre Jolivet @*/
35795ea7661aSPierre Jolivet PetscErrorCode MatDenseGetSubMatrix(Mat A,PetscInt cbegin,PetscInt cend,Mat *v)
35805ea7661aSPierre Jolivet {
35815ea7661aSPierre Jolivet   PetscFunctionBegin;
35825ea7661aSPierre Jolivet   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
35835ea7661aSPierre Jolivet   PetscValidType(A,1);
35845ea7661aSPierre Jolivet   PetscValidLogicalCollectiveInt(A,cbegin,2);
35855ea7661aSPierre Jolivet   PetscValidLogicalCollectiveInt(A,cend,3);
35865ea7661aSPierre Jolivet   PetscValidPointer(v,4);
358728b400f6SJacob Faibussowitsch   PetscCheck(A->preallocated,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Matrix not preallocated");
35882c71b3e2SJacob Faibussowitsch   PetscCheckFalse(cbegin < 0 || cbegin > A->cmap->N,PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid cbegin %" PetscInt_FMT ", should be in [0,%" PetscInt_FMT ")",cbegin,A->cmap->N);
35892c71b3e2SJacob Faibussowitsch   PetscCheckFalse(cend < cbegin || cend > A->cmap->N,PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Invalid cend %" PetscInt_FMT ", should be in [%" PetscInt_FMT ",%" PetscInt_FMT ")",cend,cbegin,A->cmap->N);
3590cac4c232SBarry Smith   PetscUseMethod(A,"MatDenseGetSubMatrix_C",(Mat,PetscInt,PetscInt,Mat*),(A,cbegin,cend,v));
35915ea7661aSPierre Jolivet   PetscFunctionReturn(0);
35925ea7661aSPierre Jolivet }
35935ea7661aSPierre Jolivet 
35940f74d2c1SSatish Balay /*@
35955ea7661aSPierre Jolivet    MatDenseRestoreSubMatrix - Returns access to a block of columns of a dense matrix obtained from MatDenseGetSubMatrix().
35965ea7661aSPierre Jolivet 
35975ea7661aSPierre Jolivet    Collective
35985ea7661aSPierre Jolivet 
35995ea7661aSPierre Jolivet    Input Parameters:
36005ea7661aSPierre Jolivet +  mat - the Mat object
36015ea7661aSPierre Jolivet -  v - the Mat object
36025ea7661aSPierre Jolivet 
36035ea7661aSPierre Jolivet    Level: intermediate
36045ea7661aSPierre Jolivet 
36055ea7661aSPierre Jolivet .seealso: MATDENSE, MATDENSECUDA, MatDenseGetColumnVec(), MatDenseRestoreColumnVec(), MatDenseGetSubMatrix()
36065ea7661aSPierre Jolivet @*/
36075ea7661aSPierre Jolivet PetscErrorCode MatDenseRestoreSubMatrix(Mat A,Mat *v)
36085ea7661aSPierre Jolivet {
36095ea7661aSPierre Jolivet   PetscFunctionBegin;
36105ea7661aSPierre Jolivet   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
36115ea7661aSPierre Jolivet   PetscValidType(A,1);
36125ea7661aSPierre Jolivet   PetscValidPointer(v,2);
3613cac4c232SBarry Smith   PetscUseMethod(A,"MatDenseRestoreSubMatrix_C",(Mat,Mat*),(A,v));
36145ea7661aSPierre Jolivet   PetscFunctionReturn(0);
36155ea7661aSPierre Jolivet }
3616