dense/seq/dense.c

#ifndef lint
static char vcid[] = "$Id: dense.c,v 1.21 1995/04/15 03:28:00 bsmith Exp curfman $";
#endif

/*
    Standard Fortran style matrices
*/
#include "ptscimpl.h"
#include "plapack.h"
#include "matimpl.h"
#include "math.h"
#include "vec/vecimpl.h"

typedef struct {
  Scalar *v;
  int    roworiented;
  int    m,n,pad;
  int    *pivots;   /* pivots in LU factorization */
} Mat_Dense;


static int MatGetInfo_Dense(Mat matin,int flag,int *nz,int *nzalloc,int *mem)
{
  Mat_Dense *mat = (Mat_Dense *) matin->data;
  int    i,N = mat->m*mat->n,count = 0;
  Scalar *v = mat->v;
  for ( i=0; i<N; i++ ) {if (*v != 0.0) count++; v++;}
  *nz = count; *nzalloc = N; *mem = N*sizeof(Scalar);
  return 0;
}

/* ---------------------------------------------------------------*/
/* COMMENT: I have chosen to hide column permutation in the pivots,
   rather than put it in the Mat->col slot.*/
static int MatLUFactor_Dense(Mat matin,IS row,IS col)
{
  Mat_Dense *mat = (Mat_Dense *) matin->data;
  int    info;
  if (!mat->pivots) {
    mat->pivots = (int *) MALLOC( mat->m*sizeof(int) );
    CHKPTR(mat->pivots);
  }
  LAgetrf_(&mat->m,&mat->n,mat->v,&mat->m,mat->pivots,&info);
  if (info) SETERR(1,"Bad LU factorization");
  matin->factor = FACTOR_LU;
  return 0;
}
static int MatLUFactorSymbolic_Dense(Mat matin,IS row,IS col,Mat *fact)
{
  int ierr;
  if ((ierr = MatCopy(matin,fact))) SETERR(ierr,0);
  return 0;
}
static int MatLUFactorNumeric_Dense(Mat matin,Mat *fact)
{
  return MatLUFactor(*fact,0,0);
}
static int MatChFactorSymbolic_Dense(Mat matin,IS row,Mat *fact)
{
  int ierr;
  if ((ierr = MatCopy(matin,fact))) SETERR(ierr,0);
  return 0;
}
static int MatChFactorNumeric_Dense(Mat matin,Mat *fact)
{
  return MatCholeskyFactor(*fact,0);
}
static int MatChFactor_Dense(Mat matin,IS perm)
{
  Mat_Dense    *mat = (Mat_Dense *) matin->data;
  int       info;
  if (mat->pivots) {FREE(mat->pivots); mat->pivots = 0;}
  LApotrf_("L",&mat->n,mat->v,&mat->m,&info);
  if (info) SETERR(1,"Bad Cholesky factorization");
  matin->factor = FACTOR_CHOLESKY;
  return 0;
}

static int MatSolve_Dense(Mat matin,Vec xx,Vec yy)
{
  Mat_Dense *mat = (Mat_Dense *) matin->data;
  int    one = 1, info;
  Scalar *x, *y;
  VecGetArray(xx,&x); VecGetArray(yy,&y);
  MEMCPY(y,x,mat->m*sizeof(Scalar));
  if (matin->factor == FACTOR_LU) {
    LAgetrs_( "N", &mat->m, &one, mat->v, &mat->m, mat->pivots,
              y, &mat->m, &info );
  }
  else if (matin->factor == FACTOR_CHOLESKY){
    LApotrs_( "L", &mat->m, &one, mat->v, &mat->m,
              y, &mat->m, &info );
  }
  else SETERR(1,"Matrix must be factored to solve");
  if (info) SETERR(1,"Bad solve");
  return 0;
}
static int MatSolveTrans_Dense(Mat matin,Vec xx,Vec yy)
{
  Mat_Dense *mat = (Mat_Dense *) matin->data;
  int    one = 1, info;
  Scalar *x, *y;
  VecGetArray(xx,&x); VecGetArray(yy,&y);
  MEMCPY(y,x,mat->m*sizeof(Scalar));
  /* assume if pivots exist then LU else Cholesky */
  if (mat->pivots) {
    LAgetrs_( "T", &mat->m, &one, mat->v, &mat->m, mat->pivots,
              y, &mat->m, &info );
  }
  else {
    LApotrs_( "L", &mat->m, &one, mat->v, &mat->m,
              y, &mat->m, &info );
  }
  if (info) SETERR(1,"Bad solve");
  return 0;
}
static int MatSolveAdd_Dense(Mat matin,Vec xx,Vec zz,Vec yy)
{
  Mat_Dense *mat = (Mat_Dense *) matin->data;
  int    one = 1, info,ierr;
  Scalar *x, *y, sone = 1.0;
  Vec    tmp = 0;
  VecGetArray(xx,&x); VecGetArray(yy,&y);
  if (yy == zz) {
    ierr = VecCreate(yy,&tmp); CHKERR(ierr);
    ierr = VecCopy(yy,tmp); CHKERR(ierr);
  }
  MEMCPY(y,x,mat->m*sizeof(Scalar));
  /* assume if pivots exist then LU else Cholesky */
  if (mat->pivots) {
    LAgetrs_( "N", &mat->m, &one, mat->v, &mat->m, mat->pivots,
              y, &mat->m, &info );
  }
  else {
    LApotrs_( "L", &mat->m, &one, mat->v, &mat->m,
              y, &mat->m, &info );
  }
  if (info) SETERR(1,"Bad solve");
  if (tmp) {VecAXPY(&sone,tmp,yy); VecDestroy(tmp);}
  else VecAXPY(&sone,zz,yy);
  return 0;
}
static int MatSolveTransAdd_Dense(Mat matin,Vec xx,Vec zz, Vec yy)
{
  Mat_Dense  *mat = (Mat_Dense *) matin->data;
  int     one = 1, info,ierr;
  Scalar  *x, *y, sone = 1.0;
  Vec     tmp;
  VecGetArray(xx,&x); VecGetArray(yy,&y);
  if (yy == zz) {
    ierr = VecCreate(yy,&tmp); CHKERR(ierr);
    ierr = VecCopy(yy,tmp); CHKERR(ierr);
  }
  MEMCPY(y,x,mat->m*sizeof(Scalar));
  /* assume if pivots exist then LU else Cholesky */
  if (mat->pivots) {
    LAgetrs_( "T", &mat->m, &one, mat->v, &mat->m, mat->pivots,
              y, &mat->m, &info );
  }
  else {
    LApotrs_( "L", &mat->m, &one, mat->v, &mat->m,
              y, &mat->m, &info );
  }
  if (info) SETERR(1,"Bad solve");
  if (tmp) {VecAXPY(&sone,tmp,yy); VecDestroy(tmp);}
  else VecAXPY(&sone,zz,yy);
  return 0;
}
/* ------------------------------------------------------------------*/
static int MatRelax_Dense(Mat matin,Vec bb,double omega,int flag,double shift,
                       int its,Vec xx)
{
  Mat_Dense *mat = (Mat_Dense *) matin->data;
  Scalar *x, *b, *v = mat->v, zero = 0.0, xt;
  int    o = 1,ierr, m = mat->m, i;

  if (flag & SOR_ZERO_INITIAL_GUESS) {
    /* this is a hack fix, should have another version without
       the second BLdot */
    if ((ierr = VecSet(&zero,xx))) SETERR(ierr,0);
  }
  VecGetArray(xx,&x); VecGetArray(bb,&b);
  while (its--) {
    if (flag & SOR_FORWARD_SWEEP){
      for ( i=0; i<m; i++ ) {
        xt = b[i]-BLdot_(&m,v+i,&m,x,&o);
        x[i] = (1. - omega)*x[i] + omega*(xt/(v[i + i*m]+shift) + x[i]);
      }
    }
    if (flag & SOR_BACKWARD_SWEEP) {
      for ( i=m-1; i>=0; i-- ) {
        xt = b[i]-BLdot_(&m,v+i,&m,x,&o);
        x[i] = (1. - omega)*x[i] + omega*(xt/(v[i + i*m]+shift) + x[i]);
      }
    }
  }
  return 0;
}

/* -----------------------------------------------------------------*/
static int MatMultTrans_Dense(Mat matin,Vec xx,Vec yy)
{
  Mat_Dense *mat = (Mat_Dense *) matin->data;
  Scalar *v = mat->v, *x, *y;
  int _One=1;Scalar _DOne=1.0, _DZero=0.0;
  VecGetArray(xx,&x), VecGetArray(yy,&y);
  LAgemv_( "T", &(mat->m), &(mat->n), &_DOne, v, &(mat->m),
         x, &_One, &_DZero, y, &_One );
  return 0;
}
static int MatMult_Dense(Mat matin,Vec xx,Vec yy)
{
  Mat_Dense *mat = (Mat_Dense *) matin->data;
  Scalar *v = mat->v, *x, *y;
  int _One=1;Scalar _DOne=1.0, _DZero=0.0;
  VecGetArray(xx,&x); VecGetArray(yy,&y);
  LAgemv_( "N", &(mat->m), &(mat->n), &_DOne, v, &(mat->m),
         x, &_One, &_DZero, y, &_One );
  return 0;
}
static int MatMultAdd_Dense(Mat matin,Vec xx,Vec zz,Vec yy)
{
  Mat_Dense *mat = (Mat_Dense *) matin->data;
  Scalar *v = mat->v, *x, *y, *z;
  int    _One=1; Scalar _DOne=1.0;
  VecGetArray(xx,&x); VecGetArray(yy,&y); VecGetArray(zz,&z);
  if (zz != yy) MEMCPY(y,z,mat->m*sizeof(Scalar));
  LAgemv_( "N", &(mat->m), &(mat->n), &_DOne, v, &(mat->m),
         x, &_One, &_DOne, y, &_One );
  return 0;
}
static int MatMultTransAdd_Dense(Mat matin,Vec xx,Vec zz,Vec yy)
{
  Mat_Dense *mat = (Mat_Dense *) matin->data;
  Scalar *v = mat->v, *x, *y, *z;
  int    _One=1;
  Scalar _DOne=1.0;
  VecGetArray(xx,&x); VecGetArray(yy,&y);
  VecGetArray(zz,&z);
  if (zz != yy) MEMCPY(y,z,mat->m*sizeof(Scalar));
  LAgemv_( "T", &(mat->m), &(mat->n), &_DOne, v, &(mat->m),
         x, &_One, &_DOne, y, &_One );
  return 0;
}

/* -----------------------------------------------------------------*/
static int MatGetRow_Dense(Mat matin,int row,int *ncols,int **cols,
                        Scalar **vals)
{
  Mat_Dense *mat = (Mat_Dense *) matin->data;
  Scalar *v;
  int    i;
  *ncols = mat->n;
  if (cols) {
    *cols = (int *) MALLOC(mat->n*sizeof(int)); CHKPTR(*cols);
    for ( i=0; i<mat->n; i++ ) *cols[i] = i;
  }
  if (vals) {
    *vals = (Scalar *) MALLOC(mat->n*sizeof(Scalar)); CHKPTR(*vals);
    v = mat->v + row;
    for ( i=0; i<mat->n; i++ ) {*vals[i] = *v; v += mat->m;}
  }
  return 0;
}
static int MatRestoreRow_Dense(Mat matin,int row,int *ncols,int **cols,
                            Scalar **vals)
{
  if (cols) { FREE(*cols); }
  if (vals) { FREE(*vals); }
  return 0;
}
/* ----------------------------------------------------------------*/
static int MatInsert_Dense(Mat matin,int m,int *indexm,int n,
                        int *indexn,Scalar *v,InsertMode addv)
{
  Mat_Dense *mat = (Mat_Dense *) matin->data;
  int    i,j;

  if (!mat->roworiented) {
    if (addv == InsertValues) {
      for ( j=0; j<n; j++ ) {
        if (indexn[j] < 0) {*v += m; continue;}
        for ( i=0; i<m; i++ ) {
          if (indexm[i] < 0) {*v++; continue;}
          mat->v[indexn[j]*mat->m + indexm[i]] = *v++;
        }
      }
    }
    else {
      for ( j=0; j<n; j++ ) {
        if (indexn[j] < 0) {*v += m; continue;}
        for ( i=0; i<m; i++ ) {
          if (indexm[i] < 0) {*v++; continue;}
          mat->v[indexn[j]*mat->m + indexm[i]] += *v++;
        }
      }
    }
  }
  else {
    if (addv == InsertValues) {
      for ( i=0; i<m; i++ ) {
        if (indexm[i] < 0) {*v += n; continue;}
        for ( j=0; j<n; j++ ) {
          if (indexn[j] < 0) {*v++; continue;}
          mat->v[indexn[j]*mat->m + indexm[i]] = *v++;
        }
      }
    }
    else {
      for ( i=0; i<m; i++ ) {
        if (indexm[i] < 0) {*v += n; continue;}
        for ( j=0; j<n; j++ ) {
          if (indexn[j] < 0) {*v++; continue;}
          mat->v[indexn[j]*mat->m + indexm[i]] += *v++;
        }
      }
    }
  }
  return 0;
}

/* -----------------------------------------------------------------*/
static int MatCopy_Dense(Mat matin,Mat *newmat)
{
  Mat_Dense *mat = (Mat_Dense *) matin->data;
  int ierr;
  Mat newi;
  Mat_Dense *l;
  if ((ierr = MatCreateSequentialDense(matin->comm,mat->m,mat->n,&newi)))
                                                          SETERR(ierr,0);
  l = (Mat_Dense *) newi->data;
  MEMCPY(l->v,mat->v,mat->m*mat->n*sizeof(Scalar));
  *newmat = newi;
  return 0;
}
#include "viewer.h"

int MatView_Dense(PetscObject obj,Viewer ptr)
{
  Mat         matin = (Mat) obj;
  Mat_Dense      *mat = (Mat_Dense *) matin->data;
  Scalar      *v;
  int         i,j;
  PetscObject ojb = (PetscObject) ptr;

  if (ojb && ojb->cookie == VIEWER_COOKIE && ojb->type == MATLAB_VIEWER) {
    return ViewerMatlabPutArray(ptr,mat->m,mat->n,mat->v);
  }
  else {
    FILE *fd = ViewerFileGetPointer(ptr);
    for ( i=0; i<mat->m; i++ ) {
      v = mat->v + i;
      for ( j=0; j<mat->n; j++ ) {
#if defined(PETSC_COMPLEX)
        fprintf(fd,"%6.4e + %6.4e i ",real(*v),imag(*v)); v += mat->m;
#else
        fprintf(fd,"%6.4e ",*v); v += mat->m;
#endif
      }
      fprintf(fd,"\n");
    }
  }
  return 0;
}


static int MatDestroy_Dense(PetscObject obj)
{
  Mat    mat = (Mat) obj;
  Mat_Dense *l = (Mat_Dense *) mat->data;
#if defined(PETSC_LOG)
  PLogObjectState(obj,"Rows %d Cols %d",l->m,l->n);
#endif
  if (l->pivots) FREE(l->pivots);
  FREE(l);
  PLogObjectDestroy(mat);
  PETSCHEADERDESTROY(mat);
  return 0;
}

static int MatTrans_Dense(Mat matin)
{
  Mat_Dense *mat = (Mat_Dense *) matin->data;
  int    k,j;
  Scalar *v = mat->v, tmp;
  if (mat->m != mat->n) {
    SETERR(1,"Cannot transpose rectangular dense matrix");
  }
  for ( j=0; j<mat->m; j++ ) {
    for ( k=0; k<j; k++ ) {
      tmp = v[j + k*mat->n];
      v[j + k*mat->n] = v[k + j*mat->n];
      v[k + j*mat->n] = tmp;
    }
  }
  return 0;
}

static int MatEqual_Dense(Mat matin1,Mat matin2)
{
  Mat_Dense *mat1 = (Mat_Dense *) matin1->data;
  Mat_Dense *mat2 = (Mat_Dense *) matin2->data;
  int    i;
  Scalar *v1 = mat1->v, *v2 = mat2->v;
  if (mat1->m != mat2->m) return 0;
  if (mat1->n != mat2->n) return 0;
  for ( i=0; i<mat1->m*mat1->n; i++ ) {
    if (*v1 != *v2) return 0;
    v1++; v2++;
  }
  return 1;
}

static int MatGetDiag_Dense(Mat matin,Vec v)
{
  Mat_Dense *mat = (Mat_Dense *) matin->data;
  int    i, n;
  Scalar *x;
  CHKTYPE(v,SEQVECTOR);
  VecGetArray(v,&x); VecGetSize(v,&n);
  if (n != mat->m) SETERR(1,"Nonconforming matrix and vector");
  for ( i=0; i<mat->m; i++ ) {
    x[i] = mat->v[i*mat->m + i];
  }
  return 0;
}

static int MatScale_Dense(Mat matin,Vec ll,Vec rr)
{
  Mat_Dense *mat = (Mat_Dense *) matin->data;
  Scalar *l,*r,x,*v;
  int    i,j,m = mat->m, n = mat->n;
  if (ll) {
    VecGetArray(ll,&l); VecGetSize(ll,&m);
    if (m != mat->m) SETERR(1,"Left scaling vector wrong length");
    for ( i=0; i<m; i++ ) {
      x = l[i];
      v = mat->v + i;
      for ( j=0; j<n; j++ ) { (*v) *= x; v+= m;}
    }
  }
  if (rr) {
    VecGetArray(rr,&r); VecGetSize(rr,&n);
    if (n != mat->n) SETERR(1,"Right scaling vector wrong length");
    for ( i=0; i<n; i++ ) {
      x = r[i];
      v = mat->v + i*m;
      for ( j=0; j<m; j++ ) { (*v++) *= x;}
    }
  }
  return 0;
}


static int MatNorm_Dense(Mat matin,int type,double *norm)
{
  Mat_Dense *mat = (Mat_Dense *) matin->data;
  Scalar *v = mat->v;
  double sum = 0.0;
  int    i, j;
  if (type == NORM_FROBENIUS) {
    for (i=0; i<mat->n*mat->m; i++ ) {
#if defined(PETSC_COMPLEX)
      sum += real(conj(*v)*(*v)); v++;
#else
      sum += (*v)*(*v); v++;
#endif
    }
    *norm = sqrt(sum);
  }
  else if (type == NORM_1) {
    *norm = 0.0;
    for ( j=0; j<mat->n; j++ ) {
      sum = 0.0;
      for ( i=0; i<mat->m; i++ ) {
#if defined(PETSC_COMPLEX)
        sum += abs(*v++);
#else
        sum += fabs(*v++);
#endif
      }
      if (sum > *norm) *norm = sum;
    }
  }
  else if (type == NORM_INFINITY) {
    *norm = 0.0;
    for ( j=0; j<mat->m; j++ ) {
      v = mat->v + j;
      sum = 0.0;
      for ( i=0; i<mat->n; i++ ) {
#if defined(PETSC_COMPLEX)
        sum += abs(*v); v += mat->m;
#else
        sum += fabs(*v); v += mat->m;
#endif
      }
      if (sum > *norm) *norm = sum;
    }
  }
  else {
    SETERR(1,"No support for the two norm yet");
  }
  return 0;
}

static int MatInsOpt_Dense(Mat aijin,int op)
{
  Mat_Dense *aij = (Mat_Dense *) aijin->data;
  if (op == ROW_ORIENTED)            aij->roworiented = 1;
  else if (op == COLUMN_ORIENTED)    aij->roworiented = 0;
  /* doesn't care about sorted rows or columns */
  return 0;
}

static int MatZero_Dense(Mat A)
{
  Mat_Dense *l = (Mat_Dense *) A->data;
  MEMSET(l->v,0,l->m*l->n*sizeof(Scalar));
  return 0;
}

static int MatZeroRows_Dense(Mat A,IS is,Scalar *diag)
{
  Mat_Dense *l = (Mat_Dense *) A->data;
  int    n = l->n, i, j,ierr,N, *rows;
  Scalar *slot;
  ierr = ISGetLocalSize(is,&N); CHKERR(ierr);
  ierr = ISGetIndices(is,&rows); CHKERR(ierr);
  for ( i=0; i<N; i++ ) {
    slot = l->v + rows[i];
    for ( j=0; j<n; j++ ) { *slot = 0.0; slot += n;}
  }
  if (diag) {
    for ( i=0; i<N; i++ ) {
      slot = l->v + (n+1)*rows[i];
      *slot = *diag;
    }
  }
  ISRestoreIndices(is,&rows);
  return 0;
}

static int MatGetSize_Dense(Mat matin,int *m,int *n)
{
  Mat_Dense *mat = (Mat_Dense *) matin->data;
  *m = mat->m; *n = mat->n;
  return 0;
}

static int MatGetArray_Dense(Mat matin,Scalar **array)
{
  Mat_Dense *mat = (Mat_Dense *) matin->data;
  *array = mat->v;
  return 0;
}
/* -------------------------------------------------------------------*/
static struct _MatOps MatOps = {MatInsert_Dense,
       MatGetRow_Dense, MatRestoreRow_Dense,
       MatMult_Dense, MatMultAdd_Dense,
       MatMultTrans_Dense, MatMultTransAdd_Dense,
       MatSolve_Dense,MatSolveAdd_Dense,
       MatSolveTrans_Dense,MatSolveTransAdd_Dense,
       MatLUFactor_Dense,MatChFactor_Dense,
       MatRelax_Dense,
       MatTrans_Dense,
       MatGetInfo_Dense,MatEqual_Dense,
       MatCopy_Dense,
       MatGetDiag_Dense,MatScale_Dense,MatNorm_Dense,
       0,0,
       0, MatInsOpt_Dense,MatZero_Dense,MatZeroRows_Dense,0,
       MatLUFactorSymbolic_Dense,MatLUFactorNumeric_Dense,
       MatChFactorSymbolic_Dense,MatChFactorNumeric_Dense,
       MatGetSize_Dense,MatGetSize_Dense,0,
       0,0,MatGetArray_Dense
};
/*@
   MatCreateSequentialDense - Creates a sequential dense matrix that
   is stored in the usual Fortran 77 manner. Many of the matrix
   operations use the BLAS and LAPACK routines.

   Input Parameters:
.  comm - MPI communicator, set to MPI_COMM_SELF
.  m - number of rows
.  n - number of column

   Output Parameter:
.  newmat - the matrix

  Keywords: Mat, dense, matrix, LAPACK, BLAS
@*/
int MatCreateSequentialDense(MPI_Comm comm,int m,int n,Mat *newmat)
{
  int       size = sizeof(Mat_Dense) + m*n*sizeof(Scalar);
  Mat mat;
  Mat_Dense    *l;
  *newmat        = 0;
  PETSCHEADERCREATE(mat,_Mat,MAT_COOKIE,MATDENSE,comm);
  PLogObjectCreate(mat);
  l              = (Mat_Dense *) MALLOC(size); CHKPTR(l);
  mat->ops       = &MatOps;
  mat->destroy   = MatDestroy_Dense;
  mat->view      = MatView_Dense;
  mat->data      = (void *) l;
  mat->factor    = 0;
  mat->col       = 0;
  mat->row       = 0;

  l->m           = m;
  l->n           = n;
  l->v           = (Scalar *) (l + 1);
  l->pivots      = 0;
  l->roworiented = 1;

  MEMSET(l->v,0,m*n*sizeof(Scalar));
  *newmat = mat;
  return 0;
}

int MatCreate_Dense(Mat matin,Mat *newmat)
{
  Mat_Dense *m = (Mat_Dense *) matin->data;
  return MatCreateSequentialDense(matin->comm,m->m,m->n,newmat);
}