1 #include <../src/mat/impls/elemental/matelemimpl.h> /*I "petscmat.h" I*/ 2 3 /* 4 The variable Petsc_Elemental_keyval is used to indicate an MPI attribute that 5 is attached to a communicator, in this case the attribute is a Mat_Elemental_Grid 6 */ 7 static PetscMPIInt Petsc_Elemental_keyval = MPI_KEYVAL_INVALID; 8 9 #undef __FUNCT__ 10 #define __FUNCT__ "PetscElementalInitializePackage" 11 /*@C 12 PetscElementalInitializePackage - Initialize Elemental package 13 14 Logically Collective 15 16 Input Arguments: 17 . path - the dynamic library path or PETSC_NULL 18 19 Level: developer 20 21 .seealso: MATELEMENTAL, PetscElementalFinalizePackage() 22 @*/ 23 PetscErrorCode PetscElementalInitializePackage(const char *path) 24 { 25 PetscErrorCode ierr; 26 27 PetscFunctionBegin; 28 if (elem::Initialized()) PetscFunctionReturn(0); 29 { /* We have already initialized MPI, so this song and dance is just to pass these variables (which won't be used by Elemental) through the interface that needs references */ 30 int zero = 0; 31 char **nothing = 0; 32 elem::Initialize(zero,nothing); 33 } 34 ierr = PetscRegisterFinalize(PetscElementalFinalizePackage);CHKERRQ(ierr); 35 PetscFunctionReturn(0); 36 } 37 38 #undef __FUNCT__ 39 #define __FUNCT__ "PetscElementalFinalizePackage" 40 /*@C 41 PetscElementalFinalizePackage - Finalize Elemental package 42 43 Logically Collective 44 45 Level: developer 46 47 .seealso: MATELEMENTAL, PetscElementalInitializePackage() 48 @*/ 49 PetscErrorCode PetscElementalFinalizePackage(void) 50 { 51 52 PetscFunctionBegin; 53 elem::Finalize(); 54 PetscFunctionReturn(0); 55 } 56 57 #undef __FUNCT__ 58 #define __FUNCT__ "MatView_Elemental" 59 static PetscErrorCode MatView_Elemental(Mat A,PetscViewer viewer) 60 { 61 PetscErrorCode ierr; 62 Mat_Elemental *a = (Mat_Elemental*)A->data; 63 PetscBool iascii; 64 65 PetscFunctionBegin; 66 ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 67 if (iascii) { 68 PetscViewerFormat format; 69 ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 70 if (format == PETSC_VIEWER_ASCII_INFO) { 71 /* call elemental viewing function */ 72 ierr = PetscViewerASCIIPrintf(viewer,"Elemental run parameters:\n");CHKERRQ(ierr); 73 ierr = PetscViewerASCIIPrintf(viewer," allocated entries=%d\n",(*a->emat).AllocatedMemory());CHKERRQ(ierr); 74 ierr = PetscViewerASCIIPrintf(viewer," grid height=%d, grid width=%d\n",(*a->emat).Grid().Height(),(*a->emat).Grid().Width());CHKERRQ(ierr); 75 if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 76 /* call elemental viewing function */ 77 ierr = PetscPrintf(((PetscObject)viewer)->comm,"test matview_elemental 2\n");CHKERRQ(ierr); 78 } 79 80 } else if (format == PETSC_VIEWER_DEFAULT) { 81 ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 82 ierr = PetscObjectPrintClassNamePrefixType((PetscObject)A,viewer,"Matrix Object");CHKERRQ(ierr); 83 a->emat->Print("Elemental matrix (cyclic ordering)"); 84 ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 85 if (A->factortype == MAT_FACTOR_NONE){ 86 Mat Adense; 87 ierr = PetscPrintf(((PetscObject)viewer)->comm,"Elemental matrix (explicit ordering)\n");CHKERRQ(ierr); 88 ierr = MatConvert(A,MATDENSE,MAT_INITIAL_MATRIX,&Adense);CHKERRQ(ierr); 89 ierr = MatView(Adense,viewer);CHKERRQ(ierr); 90 ierr = MatDestroy(&Adense);CHKERRQ(ierr); 91 } 92 } else SETERRQ(((PetscObject)viewer)->comm,PETSC_ERR_SUP,"Format"); 93 } else { 94 /* convert to dense format and call MatView() */ 95 Mat Adense; 96 ierr = PetscPrintf(((PetscObject)viewer)->comm,"Elemental matrix (explicit ordering)\n");CHKERRQ(ierr); 97 ierr = MatConvert(A,MATDENSE,MAT_INITIAL_MATRIX,&Adense);CHKERRQ(ierr); 98 ierr = MatView(Adense,viewer);CHKERRQ(ierr); 99 ierr = MatDestroy(&Adense);CHKERRQ(ierr); 100 } 101 PetscFunctionReturn(0); 102 } 103 104 #undef __FUNCT__ 105 #define __FUNCT__ "MatGetInfo_Elemental" 106 static PetscErrorCode MatGetInfo_Elemental(Mat A,MatInfoType flag,MatInfo *info) 107 { 108 Mat_Elemental *a = (Mat_Elemental*)A->data; 109 PetscMPIInt rank; 110 111 PetscFunctionBegin; 112 MPI_Comm_rank(((PetscObject)A)->comm,&rank); 113 114 /* if (!rank) printf(" .........MatGetInfo_Elemental ...\n"); */ 115 info->block_size = 1.0; 116 117 if (flag == MAT_LOCAL) { 118 info->nz_allocated = (double)(*a->emat).AllocatedMemory(); /* locally allocated */ 119 info->nz_used = info->nz_allocated; 120 } else if (flag == MAT_GLOBAL_MAX) { 121 //ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr); 122 /* see MatGetInfo_MPIAIJ() for getting global info->nz_allocated! */ 123 //SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP," MAT_GLOBAL_MAX not written yet"); 124 } else if (flag == MAT_GLOBAL_SUM) { 125 //SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP," MAT_GLOBAL_SUM not written yet"); 126 info->nz_allocated = (double)(*a->emat).AllocatedMemory(); /* locally allocated */ 127 info->nz_used = info->nz_allocated; /* assume Elemental does accurate allocation */ 128 //ierr = MPI_Allreduce(isend,irecv,1,MPIU_REAL,MPIU_SUM,((PetscObject)A)->comm);CHKERRQ(ierr); 129 //PetscPrintf(PETSC_COMM_SELF," ... [%d] locally allocated %g\n",rank,info->nz_allocated); 130 } 131 132 info->nz_unneeded = 0.0; 133 info->assemblies = (double)A->num_ass; 134 info->mallocs = 0; 135 info->memory = ((PetscObject)A)->mem; 136 info->fill_ratio_given = 0; /* determined by Elemental */ 137 info->fill_ratio_needed = 0; 138 info->factor_mallocs = 0; 139 PetscFunctionReturn(0); 140 } 141 142 #undef __FUNCT__ 143 #define __FUNCT__ "MatSetValues_Elemental" 144 static PetscErrorCode MatSetValues_Elemental(Mat A,PetscInt nr,const PetscInt *rows,PetscInt nc,const PetscInt *cols,const PetscScalar *vals,InsertMode imode) 145 { 146 PetscErrorCode ierr; 147 Mat_Elemental *a = (Mat_Elemental*)A->data; 148 PetscMPIInt rank; 149 PetscInt i,j,rrank,ridx,crank,cidx; 150 151 PetscFunctionBegin; 152 ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 153 154 const elem::Grid &grid = a->emat->Grid(); 155 for (i=0; i<nr; i++) { 156 PetscInt erow,ecol,elrow,elcol; 157 if (rows[i] < 0) continue; 158 P2RO(A,0,rows[i],&rrank,&ridx); 159 RO2E(A,0,rrank,ridx,&erow); 160 if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_PLIB,"Incorrect row translation"); 161 for (j=0; j<nc; j++) { 162 if (cols[j] < 0) continue; 163 P2RO(A,1,cols[j],&crank,&cidx); 164 RO2E(A,1,crank,cidx,&ecol); 165 if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_PLIB,"Incorrect col translation"); 166 if (erow % grid.MCSize() != grid.MCRank() || ecol % grid.MRSize() != grid.MRRank()){ /* off-proc entry */ 167 if (imode != ADD_VALUES) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only ADD_VALUES to off-processor entry is supported"); 168 /* PetscPrintf(PETSC_COMM_SELF,"[%D] add off-proc entry (%D,%D, %g) (%D %D)\n",rank,rows[i],cols[j],*(vals+i*nc),erow,ecol); */ 169 a->esubmat->Set(0,0, (PetscElemScalar)vals[i*nc+j]); 170 a->interface->Axpy(1.0,*(a->esubmat),erow,ecol); 171 continue; 172 } 173 elrow = erow / grid.MCSize(); 174 elcol = ecol / grid.MRSize(); 175 switch (imode) { 176 case INSERT_VALUES: a->emat->SetLocal(elrow,elcol,(PetscElemScalar)vals[i*nc+j]); break; 177 case ADD_VALUES: a->emat->UpdateLocal(elrow,elcol,(PetscElemScalar)vals[i*nc+j]); break; 178 default: SETERRQ1(((PetscObject)A)->comm,PETSC_ERR_SUP,"No support for InsertMode %d",(int)imode); 179 } 180 } 181 } 182 PetscFunctionReturn(0); 183 } 184 185 #undef __FUNCT__ 186 #define __FUNCT__ "MatMult_Elemental" 187 static PetscErrorCode MatMult_Elemental(Mat A,Vec X,Vec Y) 188 { 189 Mat_Elemental *a = (Mat_Elemental*)A->data; 190 PetscErrorCode ierr; 191 const PetscElemScalar *x; 192 PetscElemScalar *y; 193 PetscElemScalar one = 1,zero = 0; 194 195 PetscFunctionBegin; 196 ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 197 ierr = VecGetArray(Y,(PetscScalar **)&y);CHKERRQ(ierr); 198 { /* Scoping so that constructor is called before pointer is returned */ 199 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->cmap->N,1,0,x,A->cmap->n,*a->grid); 200 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ye(A->rmap->N,1,0,y,A->rmap->n,*a->grid); 201 elem::Gemv(elem::NORMAL,one,*a->emat,xe,zero,ye); 202 } 203 ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 204 ierr = VecRestoreArray(Y,(PetscScalar **)&y);CHKERRQ(ierr); 205 PetscFunctionReturn(0); 206 } 207 208 #undef __FUNCT__ 209 #define __FUNCT__ "MatMultTranspose_Elemental" 210 static PetscErrorCode MatMultTranspose_Elemental(Mat A,Vec X,Vec Y) 211 { 212 Mat_Elemental *a = (Mat_Elemental*)A->data; 213 PetscErrorCode ierr; 214 const PetscElemScalar *x; 215 PetscElemScalar *y; 216 PetscElemScalar one = 1,zero = 0; 217 218 PetscFunctionBegin; 219 ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 220 ierr = VecGetArray(Y,(PetscScalar **)&y);CHKERRQ(ierr); 221 { /* Scoping so that constructor is called before pointer is returned */ 222 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,x,A->rmap->n,*a->grid); 223 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ye(A->cmap->N,1,0,y,A->cmap->n,*a->grid); 224 elem::Gemv(elem::TRANSPOSE,one,*a->emat,xe,zero,ye); 225 } 226 ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 227 ierr = VecRestoreArray(Y,(PetscScalar **)&y);CHKERRQ(ierr); 228 PetscFunctionReturn(0); 229 } 230 231 #undef __FUNCT__ 232 #define __FUNCT__ "MatMultAdd_Elemental" 233 static PetscErrorCode MatMultAdd_Elemental(Mat A,Vec X,Vec Y,Vec Z) 234 { 235 Mat_Elemental *a = (Mat_Elemental*)A->data; 236 PetscErrorCode ierr; 237 const PetscElemScalar *x; 238 PetscElemScalar *z; 239 PetscElemScalar one = 1; 240 241 PetscFunctionBegin; 242 if (Y != Z) {ierr = VecCopy(Y,Z);CHKERRQ(ierr);} 243 ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 244 ierr = VecGetArray(Z,(PetscScalar **)&z);CHKERRQ(ierr); 245 { /* Scoping so that constructor is called before pointer is returned */ 246 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->cmap->N,1,0,x,A->cmap->n,*a->grid); 247 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ze(A->rmap->N,1,0,z,A->rmap->n,*a->grid); 248 elem::Gemv(elem::NORMAL,one,*a->emat,xe,one,ze); 249 } 250 ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 251 ierr = VecRestoreArray(Z,(PetscScalar **)&z);CHKERRQ(ierr); 252 PetscFunctionReturn(0); 253 } 254 255 #undef __FUNCT__ 256 #define __FUNCT__ "MatMultTransposeAdd_Elemental" 257 static PetscErrorCode MatMultTransposeAdd_Elemental(Mat A,Vec X,Vec Y,Vec Z) 258 { 259 Mat_Elemental *a = (Mat_Elemental*)A->data; 260 PetscErrorCode ierr; 261 const PetscElemScalar *x; 262 PetscElemScalar *z; 263 PetscElemScalar one = 1; 264 265 PetscFunctionBegin; 266 if (Y != Z) {ierr = VecCopy(Y,Z);CHKERRQ(ierr);} 267 ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 268 ierr = VecGetArray(Z,(PetscScalar **)&z);CHKERRQ(ierr); 269 { /* Scoping so that constructor is called before pointer is returned */ 270 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,x,A->rmap->n,*a->grid); 271 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ze(A->cmap->N,1,0,z,A->cmap->n,*a->grid); 272 elem::Gemv(elem::TRANSPOSE,one,*a->emat,xe,one,ze); 273 } 274 ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 275 ierr = VecRestoreArray(Z,(PetscScalar **)&z);CHKERRQ(ierr); 276 PetscFunctionReturn(0); 277 } 278 279 #undef __FUNCT__ 280 #define __FUNCT__ "MatMatMultNumeric_Elemental" 281 static PetscErrorCode MatMatMultNumeric_Elemental(Mat A,Mat B,Mat C) 282 { 283 Mat_Elemental *a = (Mat_Elemental*)A->data; 284 Mat_Elemental *b = (Mat_Elemental*)B->data; 285 Mat_Elemental *c = (Mat_Elemental*)C->data; 286 PetscElemScalar one = 1,zero = 0; 287 288 PetscFunctionBegin; 289 { /* Scoping so that constructor is called before pointer is returned */ 290 elem::Gemm(elem::NORMAL,elem::NORMAL,one,*a->emat,*b->emat,zero,*c->emat); 291 } 292 C->assembled = PETSC_TRUE; 293 PetscFunctionReturn(0); 294 } 295 296 #undef __FUNCT__ 297 #define __FUNCT__ "MatMatMultSymbolic_Elemental" 298 static PetscErrorCode MatMatMultSymbolic_Elemental(Mat A,Mat B,PetscReal fill,Mat *C) 299 { 300 PetscErrorCode ierr; 301 Mat Ce; 302 MPI_Comm comm=((PetscObject)A)->comm; 303 304 PetscFunctionBegin; 305 ierr = MatCreate(comm,&Ce);CHKERRQ(ierr); 306 ierr = MatSetSizes(Ce,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 307 ierr = MatSetType(Ce,MATELEMENTAL);CHKERRQ(ierr); 308 ierr = MatSetUp(Ce);CHKERRQ(ierr); 309 *C = Ce; 310 PetscFunctionReturn(0); 311 } 312 313 #undef __FUNCT__ 314 #define __FUNCT__ "MatMatMult_Elemental" 315 static PetscErrorCode MatMatMult_Elemental(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 316 { 317 PetscErrorCode ierr; 318 319 PetscFunctionBegin; 320 if (scall == MAT_INITIAL_MATRIX){ 321 ierr = MatMatMultSymbolic_Elemental(A,B,1.0,C);CHKERRQ(ierr); 322 } 323 ierr = MatMatMultNumeric_Elemental(A,B,*C);CHKERRQ(ierr); 324 PetscFunctionReturn(0); 325 } 326 327 #undef __FUNCT__ 328 #define __FUNCT__ "MatMatTransposeMultNumeric_Elemental" 329 static PetscErrorCode MatMatTransposeMultNumeric_Elemental(Mat A,Mat B,Mat C) 330 { 331 Mat_Elemental *a = (Mat_Elemental*)A->data; 332 Mat_Elemental *b = (Mat_Elemental*)B->data; 333 Mat_Elemental *c = (Mat_Elemental*)C->data; 334 PetscElemScalar one = 1,zero = 0; 335 336 PetscFunctionBegin; 337 { /* Scoping so that constructor is called before pointer is returned */ 338 elem::Gemm(elem::NORMAL,elem::TRANSPOSE,one,*a->emat,*b->emat,zero,*c->emat); 339 } 340 C->assembled = PETSC_TRUE; 341 PetscFunctionReturn(0); 342 } 343 344 #undef __FUNCT__ 345 #define __FUNCT__ "MatMatTransposeMultSymbolic_Elemental" 346 static PetscErrorCode MatMatTransposeMultSymbolic_Elemental(Mat A,Mat B,PetscReal fill,Mat *C) 347 { 348 PetscErrorCode ierr; 349 Mat Ce; 350 MPI_Comm comm=((PetscObject)A)->comm; 351 352 PetscFunctionBegin; 353 ierr = MatCreate(comm,&Ce);CHKERRQ(ierr); 354 ierr = MatSetSizes(Ce,A->rmap->n,B->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 355 ierr = MatSetType(Ce,MATELEMENTAL);CHKERRQ(ierr); 356 ierr = MatSetUp(Ce);CHKERRQ(ierr); 357 *C = Ce; 358 PetscFunctionReturn(0); 359 } 360 361 #undef __FUNCT__ 362 #define __FUNCT__ "MatMatTransposeMult_Elemental" 363 static PetscErrorCode MatMatTransposeMult_Elemental(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 364 { 365 PetscErrorCode ierr; 366 367 PetscFunctionBegin; 368 if (scall == MAT_INITIAL_MATRIX){ 369 ierr = PetscLogEventBegin(MAT_MatTransposeMultSymbolic,A,B,0,0);CHKERRQ(ierr); 370 ierr = MatMatMultSymbolic_Elemental(A,B,1.0,C);CHKERRQ(ierr); 371 ierr = PetscLogEventEnd(MAT_MatTransposeMultSymbolic,A,B,0,0);CHKERRQ(ierr); 372 } 373 ierr = PetscLogEventBegin(MAT_MatTransposeMultNumeric,A,B,0,0);CHKERRQ(ierr); 374 ierr = MatMatTransposeMultNumeric_Elemental(A,B,*C);CHKERRQ(ierr); 375 ierr = PetscLogEventEnd(MAT_MatTransposeMultNumeric,A,B,0,0);CHKERRQ(ierr); 376 PetscFunctionReturn(0); 377 } 378 379 #undef __FUNCT__ 380 #define __FUNCT__ "MatGetDiagonal_Elemental" 381 static PetscErrorCode MatGetDiagonal_Elemental(Mat A,Vec D) 382 { 383 PetscInt i,nrows,ncols,nD,rrank,ridx,crank,cidx; 384 Mat_Elemental *a = (Mat_Elemental*)A->data; 385 PetscErrorCode ierr; 386 PetscElemScalar v; 387 MPI_Comm comm=((PetscObject)A)->comm; 388 389 PetscFunctionBegin; 390 ierr = MatGetSize(A,&nrows,&ncols);CHKERRQ(ierr); 391 nD = nrows>ncols ? ncols : nrows; 392 for (i=0; i<nD; i++) { 393 PetscInt erow,ecol; 394 P2RO(A,0,i,&rrank,&ridx); 395 RO2E(A,0,rrank,ridx,&erow); 396 if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect row translation"); 397 P2RO(A,1,i,&crank,&cidx); 398 RO2E(A,1,crank,cidx,&ecol); 399 if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect col translation"); 400 v = a->emat->Get(erow,ecol); 401 ierr = VecSetValues(D,1,&i,(PetscScalar*)&v,INSERT_VALUES);CHKERRQ(ierr); 402 } 403 ierr = VecAssemblyBegin(D);CHKERRQ(ierr); 404 ierr = VecAssemblyEnd(D);CHKERRQ(ierr); 405 PetscFunctionReturn(0); 406 } 407 408 #undef __FUNCT__ 409 #define __FUNCT__ "MatDiagonalScale_Elemental" 410 static PetscErrorCode MatDiagonalScale_Elemental(Mat X,Vec L,Vec R) 411 { 412 Mat_Elemental *x = (Mat_Elemental*)X->data; 413 const PetscElemScalar *d; 414 PetscErrorCode ierr; 415 416 PetscFunctionBegin; 417 if (L == PETSC_NULL) { 418 ierr = VecGetArrayRead(R,(const PetscScalar **)&d);CHKERRQ(ierr); 419 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> de(X->cmap->N,1,0,d,X->cmap->n,*x->grid); 420 elem::DiagonalScale(elem::RIGHT,elem::NORMAL,de,*x->emat); 421 ierr = VecRestoreArrayRead(R,(const PetscScalar **)&d);CHKERRQ(ierr); 422 } else { 423 ierr = VecGetArrayRead(L,(const PetscScalar **)&d);CHKERRQ(ierr); 424 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> de(X->rmap->N,1,0,d,X->rmap->n,*x->grid); 425 elem::DiagonalScale(elem::LEFT,elem::NORMAL,de,*x->emat); 426 ierr = VecRestoreArrayRead(L,(const PetscScalar **)&d);CHKERRQ(ierr); 427 } 428 PetscFunctionReturn(0); 429 } 430 431 #undef __FUNCT__ 432 #define __FUNCT__ "MatScale_Elemental" 433 static PetscErrorCode MatScale_Elemental(Mat X,PetscScalar a) 434 { 435 Mat_Elemental *x = (Mat_Elemental*)X->data; 436 437 PetscFunctionBegin; 438 elem::Scal((PetscElemScalar)a,*x->emat); 439 PetscFunctionReturn(0); 440 } 441 442 #undef __FUNCT__ 443 #define __FUNCT__ "MatAXPY_Elemental" 444 static PetscErrorCode MatAXPY_Elemental(Mat Y,PetscScalar a,Mat X,MatStructure str) 445 { 446 Mat_Elemental *x = (Mat_Elemental*)X->data; 447 Mat_Elemental *y = (Mat_Elemental*)Y->data; 448 449 PetscFunctionBegin; 450 elem::Axpy((PetscElemScalar)a,*x->emat,*y->emat); 451 PetscFunctionReturn(0); 452 } 453 454 #undef __FUNCT__ 455 #define __FUNCT__ "MatCopy_Elemental" 456 static PetscErrorCode MatCopy_Elemental(Mat A,Mat B,MatStructure str) 457 { 458 Mat_Elemental *a=(Mat_Elemental*)A->data; 459 Mat_Elemental *b=(Mat_Elemental*)B->data; 460 461 PetscFunctionBegin; 462 elem::Copy(*a->emat,*b->emat); 463 PetscFunctionReturn(0); 464 } 465 466 #undef __FUNCT__ 467 #define __FUNCT__ "MatDuplicate_Elemental" 468 static PetscErrorCode MatDuplicate_Elemental(Mat A,MatDuplicateOption op,Mat *B) 469 { 470 Mat Be; 471 MPI_Comm comm=((PetscObject)A)->comm; 472 Mat_Elemental *a=(Mat_Elemental*)A->data; 473 PetscErrorCode ierr; 474 475 PetscFunctionBegin; 476 ierr = MatCreate(comm,&Be);CHKERRQ(ierr); 477 ierr = MatSetSizes(Be,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 478 ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr); 479 ierr = MatSetUp(Be);CHKERRQ(ierr); 480 *B = Be; 481 if (op == MAT_COPY_VALUES) { 482 Mat_Elemental *b=(Mat_Elemental*)Be->data; 483 elem::Copy(*a->emat,*b->emat); 484 } 485 Be->assembled = PETSC_TRUE; 486 PetscFunctionReturn(0); 487 } 488 489 #undef __FUNCT__ 490 #define __FUNCT__ "MatTranspose_Elemental" 491 static PetscErrorCode MatTranspose_Elemental(Mat A,MatReuse reuse,Mat *B) 492 { 493 Mat Be; 494 PetscErrorCode ierr; 495 MPI_Comm comm=((PetscObject)A)->comm; 496 Mat_Elemental *a = (Mat_Elemental*)A->data, *b; 497 498 PetscFunctionBegin; 499 /* Only out-of-place supported */ 500 if (reuse == MAT_INITIAL_MATRIX){ 501 ierr = MatCreate(comm,&Be);CHKERRQ(ierr); 502 ierr = MatSetSizes(Be,A->cmap->n,A->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 503 ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr); 504 ierr = MatSetUp(Be);CHKERRQ(ierr); 505 *B = Be; 506 } 507 b = (Mat_Elemental*)Be->data; 508 elem::Transpose(*a->emat,*b->emat); 509 Be->assembled = PETSC_TRUE; 510 PetscFunctionReturn(0); 511 } 512 513 #undef __FUNCT__ 514 #define __FUNCT__ "MatConjugate_Elemental" 515 static PetscErrorCode MatConjugate_Elemental(Mat A) 516 { 517 Mat_Elemental *a = (Mat_Elemental*)A->data; 518 519 PetscFunctionBegin; 520 elem::Conjugate(*a->emat); 521 PetscFunctionReturn(0); 522 } 523 524 #undef __FUNCT__ 525 #define __FUNCT__ "MatHermitianTranspose_Elemental" 526 static PetscErrorCode MatHermitianTranspose_Elemental(Mat A,MatReuse reuse,Mat *B) 527 { 528 Mat Be; 529 PetscErrorCode ierr; 530 MPI_Comm comm=((PetscObject)A)->comm; 531 Mat_Elemental *a = (Mat_Elemental*)A->data, *b; 532 533 PetscFunctionBegin; 534 /* Only out-of-place supported */ 535 if (reuse == MAT_INITIAL_MATRIX){ 536 ierr = MatCreate(comm,&Be);CHKERRQ(ierr); 537 ierr = MatSetSizes(Be,A->cmap->n,A->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 538 ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr); 539 ierr = MatSetUp(Be);CHKERRQ(ierr); 540 *B = Be; 541 } 542 b = (Mat_Elemental*)Be->data; 543 elem::Adjoint(*a->emat,*b->emat); 544 Be->assembled = PETSC_TRUE; 545 PetscFunctionReturn(0); 546 } 547 548 #undef __FUNCT__ 549 #define __FUNCT__ "MatSolve_Elemental" 550 static PetscErrorCode MatSolve_Elemental(Mat A,Vec B,Vec X) 551 { 552 Mat_Elemental *a = (Mat_Elemental*)A->data; 553 PetscErrorCode ierr; 554 PetscElemScalar *x; 555 556 PetscFunctionBegin; 557 ierr = VecCopy(B,X);CHKERRQ(ierr); 558 ierr = VecGetArray(X,(PetscScalar **)&x);CHKERRQ(ierr); 559 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,x,A->rmap->n,*a->grid); 560 elem::DistMatrix<PetscElemScalar,elem::MC,elem::MR> xer = xe; 561 switch (A->factortype) { 562 case MAT_FACTOR_LU: 563 if ((*a->pivot).AllocatedMemory()) { 564 elem::SolveAfterLU(elem::NORMAL,*a->emat,*a->pivot,xer); 565 elem::Copy(xer,xe); 566 } else { 567 elem::SolveAfterLU(elem::NORMAL,*a->emat,xer); 568 elem::Copy(xer,xe); 569 } 570 break; 571 case MAT_FACTOR_CHOLESKY: 572 elem::SolveAfterCholesky(elem::UPPER,elem::NORMAL,*a->emat,xer); 573 elem::Copy(xer,xe); 574 break; 575 default: 576 SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unfactored Matrix or Unsupported MatFactorType"); 577 break; 578 } 579 ierr = VecRestoreArray(X,(PetscScalar **)&x);CHKERRQ(ierr); 580 PetscFunctionReturn(0); 581 } 582 583 #undef __FUNCT__ 584 #define __FUNCT__ "MatSolveAdd_Elemental" 585 static PetscErrorCode MatSolveAdd_Elemental(Mat A,Vec B,Vec Y,Vec X) 586 { 587 PetscErrorCode ierr; 588 589 PetscFunctionBegin; 590 ierr = MatSolve_Elemental(A,B,X);CHKERRQ(ierr); 591 ierr = VecAXPY(X,1,Y);CHKERRQ(ierr); 592 PetscFunctionReturn(0); 593 } 594 595 #undef __FUNCT__ 596 #define __FUNCT__ "MatMatSolve_Elemental" 597 static PetscErrorCode MatMatSolve_Elemental(Mat A,Mat B,Mat X) 598 { 599 Mat_Elemental *a=(Mat_Elemental*)A->data; 600 Mat_Elemental *b=(Mat_Elemental*)B->data; 601 Mat_Elemental *x=(Mat_Elemental*)X->data; 602 603 PetscFunctionBegin; 604 elem::Copy(*b->emat,*x->emat); 605 switch (A->factortype) { 606 case MAT_FACTOR_LU: 607 if ((*a->pivot).AllocatedMemory()) { 608 elem::SolveAfterLU(elem::NORMAL,*a->emat,*a->pivot,*x->emat); 609 } else { 610 elem::SolveAfterLU(elem::NORMAL,*a->emat,*x->emat); 611 } 612 break; 613 case MAT_FACTOR_CHOLESKY: 614 elem::SolveAfterCholesky(elem::UPPER,elem::NORMAL,*a->emat,*x->emat); 615 break; 616 default: 617 SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unfactored Matrix or Unsupported MatFactorType"); 618 break; 619 } 620 PetscFunctionReturn(0); 621 } 622 623 #undef __FUNCT__ 624 #define __FUNCT__ "MatLUFactor_Elemental" 625 static PetscErrorCode MatLUFactor_Elemental(Mat A,IS row,IS col,const MatFactorInfo *info) 626 { 627 Mat_Elemental *a = (Mat_Elemental*)A->data; 628 629 PetscFunctionBegin; 630 if (info->dtcol){ 631 elem::LU(*a->emat,*a->pivot); 632 } else { 633 elem::LU(*a->emat); 634 } 635 A->factortype = MAT_FACTOR_LU; 636 A->assembled = PETSC_TRUE; 637 PetscFunctionReturn(0); 638 } 639 640 #undef __FUNCT__ 641 #define __FUNCT__ "MatLUFactorNumeric_Elemental" 642 static PetscErrorCode MatLUFactorNumeric_Elemental(Mat F,Mat A,const MatFactorInfo *info) 643 { 644 PetscErrorCode ierr; 645 646 PetscFunctionBegin; 647 ierr = MatCopy(A,F,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 648 ierr = MatLUFactor_Elemental(F,0,0,info);CHKERRQ(ierr); 649 PetscFunctionReturn(0); 650 } 651 652 #undef __FUNCT__ 653 #define __FUNCT__ "MatLUFactorSymbolic_Elemental" 654 static PetscErrorCode MatLUFactorSymbolic_Elemental(Mat F,Mat A,IS r,IS c,const MatFactorInfo *info) 655 { 656 PetscFunctionBegin; 657 /* F is create and allocated by MatGetFactor_elemental_petsc(), skip this routine. */ 658 PetscFunctionReturn(0); 659 } 660 661 #undef __FUNCT__ 662 #define __FUNCT__ "MatCholeskyFactor_Elemental" 663 static PetscErrorCode MatCholeskyFactor_Elemental(Mat A,IS perm,const MatFactorInfo *info) 664 { 665 Mat_Elemental *a = (Mat_Elemental*)A->data; 666 elem::DistMatrix<PetscElemScalar,elem::MC,elem::STAR> d; 667 668 PetscFunctionBegin; 669 elem::Cholesky(elem::UPPER,*a->emat); 670 A->factortype = MAT_FACTOR_CHOLESKY; 671 A->assembled = PETSC_TRUE; 672 PetscFunctionReturn(0); 673 } 674 675 #undef __FUNCT__ 676 #define __FUNCT__ "MatCholeskyFactorNumeric_Elemental" 677 static PetscErrorCode MatCholeskyFactorNumeric_Elemental(Mat F,Mat A,const MatFactorInfo *info) 678 { 679 PetscErrorCode ierr; 680 681 PetscFunctionBegin; 682 ierr = MatCopy(A,F,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 683 ierr = MatCholeskyFactor_Elemental(F,0,info);CHKERRQ(ierr); 684 PetscFunctionReturn(0); 685 } 686 687 #undef __FUNCT__ 688 #define __FUNCT__ "MatCholeskyFactorSymbolic_Elemental" 689 static PetscErrorCode MatCholeskyFactorSymbolic_Elemental(Mat F,Mat A,IS perm,const MatFactorInfo *info) 690 { 691 PetscFunctionBegin; 692 /* F is create and allocated by MatGetFactor_elemental_petsc(), skip this routine. */ 693 PetscFunctionReturn(0); 694 } 695 696 EXTERN_C_BEGIN 697 #undef __FUNCT__ 698 #define __FUNCT__ "MatFactorGetSolverPackage_elemental_elemental" 699 PetscErrorCode MatFactorGetSolverPackage_elemental_elemental(Mat A,const MatSolverPackage *type) 700 { 701 PetscFunctionBegin; 702 *type = MATSOLVERELEMENTAL; 703 PetscFunctionReturn(0); 704 } 705 EXTERN_C_END 706 707 EXTERN_C_BEGIN 708 #undef __FUNCT__ 709 #define __FUNCT__ "MatGetFactor_elemental_elemental" 710 static PetscErrorCode MatGetFactor_elemental_elemental(Mat A,MatFactorType ftype,Mat *F) 711 { 712 Mat B; 713 PetscErrorCode ierr; 714 715 PetscFunctionBegin; 716 /* Create the factorization matrix */ 717 ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr); 718 ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 719 ierr = MatSetType(B,MATELEMENTAL);CHKERRQ(ierr); 720 ierr = MatSetUp(B);CHKERRQ(ierr); 721 B->factortype = ftype; 722 ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatFactorGetSolverPackage_C","MatFactorGetSolverPackage_elemental_elemental",MatFactorGetSolverPackage_elemental_elemental);CHKERRQ(ierr); 723 *F = B; 724 PetscFunctionReturn(0); 725 } 726 EXTERN_C_END 727 728 #undef __FUNCT__ 729 #define __FUNCT__ "MatNorm_Elemental" 730 static PetscErrorCode MatNorm_Elemental(Mat A,NormType type,PetscReal *nrm) 731 { 732 Mat_Elemental *a=(Mat_Elemental*)A->data; 733 734 PetscFunctionBegin; 735 switch (type){ 736 case NORM_1: 737 *nrm = elem::Norm(*a->emat,elem::ONE_NORM); 738 break; 739 case NORM_FROBENIUS: 740 *nrm = elem::Norm(*a->emat,elem::FROBENIUS_NORM); 741 break; 742 case NORM_INFINITY: 743 *nrm = elem::Norm(*a->emat,elem::INFINITY_NORM); 744 break; 745 default: 746 printf("Error: unsupported norm type!\n"); 747 } 748 PetscFunctionReturn(0); 749 } 750 751 #undef __FUNCT__ 752 #define __FUNCT__ "MatZeroEntries_Elemental" 753 static PetscErrorCode MatZeroEntries_Elemental(Mat A) 754 { 755 Mat_Elemental *a=(Mat_Elemental*)A->data; 756 757 PetscFunctionBegin; 758 elem::Zero(*a->emat); 759 PetscFunctionReturn(0); 760 } 761 762 EXTERN_C_BEGIN 763 #undef __FUNCT__ 764 #define __FUNCT__ "MatGetOwnershipIS_Elemental" 765 static PetscErrorCode MatGetOwnershipIS_Elemental(Mat A,IS *rows,IS *cols) 766 { 767 Mat_Elemental *a = (Mat_Elemental*)A->data; 768 PetscErrorCode ierr; 769 PetscInt i,m,shift,stride,*idx; 770 771 PetscFunctionBegin; 772 if (rows) { 773 m = a->emat->LocalHeight(); 774 shift = a->emat->ColShift(); 775 stride = a->emat->ColStride(); 776 ierr = PetscMalloc(m*sizeof(PetscInt),&idx);CHKERRQ(ierr); 777 for (i=0; i<m; i++) { 778 PetscInt rank,offset; 779 E2RO(A,0,shift+i*stride,&rank,&offset); 780 RO2P(A,0,rank,offset,&idx[i]); 781 } 782 ierr = ISCreateGeneral(PETSC_COMM_SELF,m,idx,PETSC_OWN_POINTER,rows);CHKERRQ(ierr); 783 } 784 if (cols) { 785 m = a->emat->LocalWidth(); 786 shift = a->emat->RowShift(); 787 stride = a->emat->RowStride(); 788 ierr = PetscMalloc(m*sizeof(PetscInt),&idx);CHKERRQ(ierr); 789 for (i=0; i<m; i++) { 790 PetscInt rank,offset; 791 E2RO(A,1,shift+i*stride,&rank,&offset); 792 RO2P(A,1,rank,offset,&idx[i]); 793 } 794 ierr = ISCreateGeneral(PETSC_COMM_SELF,m,idx,PETSC_OWN_POINTER,cols);CHKERRQ(ierr); 795 } 796 PetscFunctionReturn(0); 797 } 798 EXTERN_C_END 799 800 #undef __FUNCT__ 801 #define __FUNCT__ "MatConvert_Elemental_Dense" 802 static PetscErrorCode MatConvert_Elemental_Dense(Mat A,MatType newtype,MatReuse reuse,Mat *B) 803 { 804 Mat Bmpi; 805 Mat_Elemental *a = (Mat_Elemental*)A->data; 806 MPI_Comm comm=((PetscObject)A)->comm; 807 PetscErrorCode ierr; 808 PetscInt rrank,ridx,crank,cidx,nrows,ncols,i,j; 809 PetscElemScalar v; 810 811 PetscFunctionBegin; 812 if (strcmp(newtype,MATDENSE) && strcmp(newtype,MATSEQDENSE) && strcmp(newtype,MATMPIDENSE)) { 813 SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unsupported New MatType: must be MATDENSE, MATSEQDENSE or MATMPIDENSE"); 814 } 815 ierr = MatCreate(comm,&Bmpi);CHKERRQ(ierr); 816 ierr = MatSetSizes(Bmpi,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 817 ierr = MatSetType(Bmpi,MATDENSE);CHKERRQ(ierr); 818 ierr = MatSetUp(Bmpi);CHKERRQ(ierr); 819 ierr = MatGetSize(A,&nrows,&ncols);CHKERRQ(ierr); 820 for (i=0; i<nrows; i++) { 821 PetscInt erow,ecol; 822 P2RO(A,0,i,&rrank,&ridx); 823 RO2E(A,0,rrank,ridx,&erow); 824 if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect row translation"); 825 for (j=0; j<ncols; j++) { 826 P2RO(A,1,j,&crank,&cidx); 827 RO2E(A,1,crank,cidx,&ecol); 828 if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect col translation"); 829 v = a->emat->Get(erow,ecol); 830 ierr = MatSetValues(Bmpi,1,&i,1,&j,(PetscScalar *)&v,INSERT_VALUES);CHKERRQ(ierr); 831 } 832 } 833 ierr = MatAssemblyBegin(Bmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 834 ierr = MatAssemblyEnd(Bmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 835 if (reuse == MAT_REUSE_MATRIX) { 836 ierr = MatHeaderReplace(A,Bmpi);CHKERRQ(ierr); 837 } else { 838 *B = Bmpi; 839 } 840 PetscFunctionReturn(0); 841 } 842 843 #undef __FUNCT__ 844 #define __FUNCT__ "MatDestroy_Elemental" 845 static PetscErrorCode MatDestroy_Elemental(Mat A) 846 { 847 Mat_Elemental *a = (Mat_Elemental*)A->data; 848 PetscErrorCode ierr; 849 Mat_Elemental_Grid *commgrid; 850 PetscBool flg; 851 MPI_Comm icomm; 852 853 PetscFunctionBegin; 854 a->interface->Detach(); 855 delete a->interface; 856 delete a->esubmat; 857 delete a->emat; 858 859 elem::mpi::Comm cxxcomm(((PetscObject)A)->comm); 860 ierr = PetscCommDuplicate(cxxcomm,&icomm,PETSC_NULL);CHKERRQ(ierr); 861 ierr = MPI_Attr_get(icomm,Petsc_Elemental_keyval,(void**)&commgrid,(int*)&flg);CHKERRQ(ierr); 862 if (--commgrid->grid_refct == 0) { 863 delete commgrid->grid; 864 ierr = PetscFree(commgrid);CHKERRQ(ierr); 865 } 866 ierr = PetscCommDestroy(&icomm);CHKERRQ(ierr); 867 ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetOwnershipIS_C","",PETSC_NULL);CHKERRQ(ierr); 868 ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetFactor_petsc_C","",PETSC_NULL);CHKERRQ(ierr); 869 ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatFactorGetSolverPackage_C","",PETSC_NULL);CHKERRQ(ierr); 870 ierr = PetscFree(A->data);CHKERRQ(ierr); 871 PetscFunctionReturn(0); 872 } 873 874 #undef __FUNCT__ 875 #define __FUNCT__ "MatSetUp_Elemental" 876 PetscErrorCode MatSetUp_Elemental(Mat A) 877 { 878 Mat_Elemental *a = (Mat_Elemental*)A->data; 879 PetscErrorCode ierr; 880 PetscMPIInt rsize,csize; 881 882 PetscFunctionBegin; 883 ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 884 ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 885 886 a->emat->ResizeTo(A->rmap->N,A->cmap->N);CHKERRQ(ierr); 887 elem::Zero(*a->emat); 888 889 ierr = MPI_Comm_size(A->rmap->comm,&rsize);CHKERRQ(ierr); 890 ierr = MPI_Comm_size(A->cmap->comm,&csize);CHKERRQ(ierr); 891 if (csize != rsize) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_ARG_INCOMP,"Cannot use row and column communicators of different sizes"); 892 a->commsize = rsize; 893 a->mr[0] = A->rmap->N % rsize; if (!a->mr[0]) a->mr[0] = rsize; 894 a->mr[1] = A->cmap->N % csize; if (!a->mr[1]) a->mr[1] = csize; 895 a->m[0] = A->rmap->N / rsize + (a->mr[0] != rsize); 896 a->m[1] = A->cmap->N / csize + (a->mr[1] != csize); 897 PetscFunctionReturn(0); 898 } 899 900 #undef __FUNCT__ 901 #define __FUNCT__ "MatAssemblyBegin_Elemental" 902 PetscErrorCode MatAssemblyBegin_Elemental(Mat A, MatAssemblyType type) 903 { 904 Mat_Elemental *a = (Mat_Elemental*)A->data; 905 906 PetscFunctionBegin; 907 a->interface->Detach(); 908 a->interface->Attach(elem::LOCAL_TO_GLOBAL,*(a->emat)); 909 PetscFunctionReturn(0); 910 } 911 912 #undef __FUNCT__ 913 #define __FUNCT__ "MatAssemblyEnd_Elemental" 914 PetscErrorCode MatAssemblyEnd_Elemental(Mat A, MatAssemblyType type) 915 { 916 PetscFunctionBegin; 917 /* Currently does nothing */ 918 PetscFunctionReturn(0); 919 } 920 921 /* -------------------------------------------------------------------*/ 922 static struct _MatOps MatOps_Values = { 923 MatSetValues_Elemental, 924 0, 925 0, 926 MatMult_Elemental, 927 /* 4*/ MatMultAdd_Elemental, 928 MatMultTranspose_Elemental, 929 MatMultTransposeAdd_Elemental, 930 MatSolve_Elemental, 931 MatSolveAdd_Elemental, 932 0, //MatSolveTranspose_Elemental, 933 /*10*/ 0, //MatSolveTransposeAdd_Elemental, 934 MatLUFactor_Elemental, 935 MatCholeskyFactor_Elemental, 936 0, 937 MatTranspose_Elemental, 938 /*15*/ MatGetInfo_Elemental, 939 0, 940 MatGetDiagonal_Elemental, 941 MatDiagonalScale_Elemental, 942 MatNorm_Elemental, 943 /*20*/ MatAssemblyBegin_Elemental, 944 MatAssemblyEnd_Elemental, 945 0, //MatSetOption_Elemental, 946 MatZeroEntries_Elemental, 947 /*24*/ 0, 948 MatLUFactorSymbolic_Elemental, 949 MatLUFactorNumeric_Elemental, 950 MatCholeskyFactorSymbolic_Elemental, 951 MatCholeskyFactorNumeric_Elemental, 952 /*29*/ MatSetUp_Elemental, 953 0, 954 0, 955 0, 956 0, 957 /*34*/ MatDuplicate_Elemental, 958 0, 959 0, 960 0, 961 0, 962 /*39*/ MatAXPY_Elemental, 963 0, 964 0, 965 0, 966 MatCopy_Elemental, 967 /*44*/ 0, 968 MatScale_Elemental, 969 0, 970 0, 971 0, 972 /*49*/ 0, 973 0, 974 0, 975 0, 976 0, 977 /*54*/ 0, 978 0, 979 0, 980 0, 981 0, 982 /*59*/ 0, 983 MatDestroy_Elemental, 984 MatView_Elemental, 985 0, 986 0, 987 /*64*/ 0, 988 0, 989 0, 990 0, 991 0, 992 /*69*/ 0, 993 0, 994 MatConvert_Elemental_Dense, 995 0, 996 0, 997 /*74*/ 0, 998 0, 999 0, 1000 0, 1001 0, 1002 /*79*/ 0, 1003 0, 1004 0, 1005 0, 1006 0, 1007 /*84*/ 0, 1008 0, 1009 0, 1010 0, 1011 0, 1012 /*89*/ MatMatMult_Elemental, 1013 MatMatMultSymbolic_Elemental, 1014 MatMatMultNumeric_Elemental, 1015 0, 1016 0, 1017 /*94*/ 0, 1018 MatMatTransposeMult_Elemental, 1019 MatMatTransposeMultSymbolic_Elemental, 1020 MatMatTransposeMultNumeric_Elemental, 1021 0, 1022 /*99*/ 0, 1023 0, 1024 0, 1025 MatConjugate_Elemental, 1026 0, 1027 /*104*/0, 1028 0, 1029 0, 1030 0, 1031 0, 1032 /*109*/MatMatSolve_Elemental, 1033 0, 1034 0, 1035 0, 1036 0, 1037 /*114*/0, 1038 0, 1039 0, 1040 0, 1041 0, 1042 /*119*/0, 1043 MatHermitianTranspose_Elemental, 1044 0, 1045 0, 1046 0, 1047 /*124*/0, 1048 0, 1049 0, 1050 0, 1051 0, 1052 /*129*/0, 1053 0, 1054 0, 1055 0, 1056 0, 1057 /*134*/0, 1058 0, 1059 0, 1060 0, 1061 0 1062 }; 1063 1064 /*MC 1065 MATELEMENTAL = "elemental" - A matrix type for dense matrices using the Elemental package 1066 1067 Options Database Keys: 1068 . -mat_type elemental - sets the matrix type to "elemental" during a call to MatSetFromOptions() 1069 . -mat_elemental_grid_height - sets Grid Height 1070 . -mat_elemental_grid_width - sets Grid Width 1071 1072 Level: beginner 1073 1074 .seealso: MATDENSE 1075 M*/ 1076 1077 #undef __FUNCT__ 1078 #define __FUNCT__ "MatCreate_Elemental" 1079 PETSC_EXTERN_C PetscErrorCode MatCreate_Elemental(Mat A) 1080 { 1081 Mat_Elemental *a; 1082 PetscErrorCode ierr; 1083 PetscBool flg,flg1,flg2; 1084 Mat_Elemental_Grid *commgrid; 1085 MPI_Comm icomm; 1086 PetscInt optv1,optv2; 1087 1088 PetscFunctionBegin; 1089 ierr = PetscElementalInitializePackage(PETSC_NULL);CHKERRQ(ierr); 1090 ierr = PetscMemcpy(A->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1091 A->insertmode = NOT_SET_VALUES; 1092 1093 ierr = PetscNewLog(A,Mat_Elemental,&a);CHKERRQ(ierr); 1094 A->data = (void*)a; 1095 1096 /* Set up the elemental matrix */ 1097 elem::mpi::Comm cxxcomm(((PetscObject)A)->comm); 1098 1099 /* Grid needs to be shared between multiple Mats on the same communicator, implement by attribute caching on the MPI_Comm */ 1100 if (Petsc_Elemental_keyval == MPI_KEYVAL_INVALID) { 1101 ierr = MPI_Keyval_create(MPI_NULL_COPY_FN,MPI_NULL_DELETE_FN,&Petsc_Elemental_keyval,(void*)0); 1102 } 1103 ierr = PetscCommDuplicate(cxxcomm,&icomm,PETSC_NULL);CHKERRQ(ierr); 1104 ierr = MPI_Attr_get(icomm,Petsc_Elemental_keyval,(void**)&commgrid,(int*)&flg);CHKERRQ(ierr); 1105 if (!flg) { 1106 ierr = PetscNewLog(A,Mat_Elemental_Grid,&commgrid);CHKERRQ(ierr); 1107 1108 ierr = PetscOptionsBegin(((PetscObject)A)->comm,((PetscObject)A)->prefix,"Elemental Options","Mat");CHKERRQ(ierr); 1109 /* displayed default grid sizes (CommSize,1) are set by us arbitrarily until elem::Grid() is called */ 1110 ierr = PetscOptionsInt("-mat_elemental_grid_height","Grid Height","None",elem::mpi::CommSize(cxxcomm),&optv1,&flg1);CHKERRQ(ierr); 1111 ierr = PetscOptionsInt("-mat_elemental_grid_width","Grid Width","None",1,&optv2,&flg2);CHKERRQ(ierr); 1112 if (flg1 || flg2) { 1113 if (optv1*optv2 != elem::mpi::CommSize(cxxcomm)) { 1114 SETERRQ(((PetscObject)A)->comm,PETSC_ERR_ARG_INCOMP,"Grid Height times Grid Width must equal CommSize"); 1115 } 1116 commgrid->grid = new elem::Grid(cxxcomm,optv1,optv2); /* use user-provided grid sizes */ 1117 } else { 1118 commgrid->grid = new elem::Grid(cxxcomm); /* use Elemental default grid sizes */ 1119 } 1120 commgrid->grid_refct = 1; 1121 ierr = MPI_Attr_put(icomm,Petsc_Elemental_keyval,(void*)commgrid);CHKERRQ(ierr); 1122 PetscOptionsEnd(); 1123 } else { 1124 commgrid->grid_refct++; 1125 } 1126 ierr = PetscCommDestroy(&icomm);CHKERRQ(ierr); 1127 a->grid = commgrid->grid; 1128 a->emat = new elem::DistMatrix<PetscElemScalar>(*a->grid); 1129 a->esubmat = new elem::Matrix<PetscElemScalar>(1,1); 1130 a->interface = new elem::AxpyInterface<PetscElemScalar>; 1131 a->pivot = new elem::DistMatrix<PetscInt,elem::VC,elem::STAR>; 1132 1133 /* build cache for off array entries formed */ 1134 a->interface->Attach(elem::LOCAL_TO_GLOBAL,*(a->emat)); 1135 1136 ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetOwnershipIS_C","MatGetOwnershipIS_Elemental",MatGetOwnershipIS_Elemental);CHKERRQ(ierr); 1137 ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetFactor_elemental_C","MatGetFactor_elemental_elemental",MatGetFactor_elemental_elemental);CHKERRQ(ierr); 1138 1139 ierr = PetscObjectChangeTypeName((PetscObject)A,MATELEMENTAL);CHKERRQ(ierr); 1140 PetscFunctionReturn(0); 1141 } 1142 1143