1 #include <../src/mat/impls/elemental/matelemimpl.h> /*I "petscmat.h" I*/ 2 3 /* 4 The variable Petsc_Elemental_keyval is used to indicate an MPI attribute that 5 is attached to a communicator, in this case the attribute is a Mat_Elemental_Grid 6 */ 7 static PetscMPIInt Petsc_Elemental_keyval = MPI_KEYVAL_INVALID; 8 9 #undef __FUNCT__ 10 #define __FUNCT__ "PetscElementalInitializePackage" 11 /*@C 12 PetscElementalInitializePackage - Initialize Elemental package 13 14 Logically Collective 15 16 Input Arguments: 17 . path - the dynamic library path or PETSC_NULL 18 19 Level: developer 20 21 .seealso: MATELEMENTAL, PetscElementalFinalizePackage() 22 @*/ 23 PetscErrorCode PetscElementalInitializePackage(const char *path) 24 { 25 PetscErrorCode ierr; 26 27 PetscFunctionBegin; 28 if (elem::Initialized()) PetscFunctionReturn(0); 29 { /* We have already initialized MPI, so this song and dance is just to pass these variables (which won't be used by Elemental) through the interface that needs references */ 30 int zero = 0; 31 char **nothing = 0; 32 elem::Initialize(zero,nothing); 33 } 34 ierr = PetscRegisterFinalize(PetscElementalFinalizePackage);CHKERRQ(ierr); 35 PetscFunctionReturn(0); 36 } 37 38 #undef __FUNCT__ 39 #define __FUNCT__ "PetscElementalFinalizePackage" 40 /*@C 41 PetscElementalFinalizePackage - Finalize Elemental package 42 43 Logically Collective 44 45 Level: developer 46 47 .seealso: MATELEMENTAL, PetscElementalInitializePackage() 48 @*/ 49 PetscErrorCode PetscElementalFinalizePackage(void) 50 { 51 52 PetscFunctionBegin; 53 elem::Finalize(); 54 PetscFunctionReturn(0); 55 } 56 57 #undef __FUNCT__ 58 #define __FUNCT__ "MatView_Elemental" 59 static PetscErrorCode MatView_Elemental(Mat A,PetscViewer viewer) 60 { 61 PetscErrorCode ierr; 62 Mat_Elemental *a = (Mat_Elemental*)A->data; 63 PetscBool iascii; 64 65 PetscFunctionBegin; 66 ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 67 if (iascii) { 68 PetscViewerFormat format; 69 ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 70 if (format == PETSC_VIEWER_ASCII_INFO) { 71 /* call elemental viewing function */ 72 ierr = PetscViewerASCIIPrintf(viewer,"Elemental run parameters:\n");CHKERRQ(ierr); 73 ierr = PetscViewerASCIIPrintf(viewer," allocated entries=%d\n",(*a->emat).AllocatedMemory());CHKERRQ(ierr); 74 ierr = PetscViewerASCIIPrintf(viewer," grid height=%d, grid width=%d\n",(*a->emat).Grid().Height(),(*a->emat).Grid().Width());CHKERRQ(ierr); 75 if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 76 /* call elemental viewing function */ 77 ierr = PetscPrintf(((PetscObject)viewer)->comm,"test matview_elemental 2\n");CHKERRQ(ierr); 78 } 79 80 } else if (format == PETSC_VIEWER_DEFAULT) { 81 ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 82 ierr = PetscObjectPrintClassNamePrefixType((PetscObject)A,viewer,"Matrix Object");CHKERRQ(ierr); 83 a->emat->Print("Elemental matrix (cyclic ordering)"); 84 ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 85 if (A->factortype == MAT_FACTOR_NONE){ 86 Mat Aaij; 87 ierr = PetscPrintf(((PetscObject)viewer)->comm,"Elemental matrix (explicit ordering)\n");CHKERRQ(ierr); 88 ierr = MatComputeExplicitOperator(A,&Aaij);CHKERRQ(ierr); 89 ierr = MatView(Aaij,viewer);CHKERRQ(ierr); 90 ierr = MatDestroy(&Aaij);CHKERRQ(ierr); 91 } 92 } else SETERRQ(((PetscObject)viewer)->comm,PETSC_ERR_SUP,"Format"); 93 } else { 94 /* convert to aij/mpidense format and call MatView() */ 95 Mat Aaij; 96 ierr = PetscPrintf(((PetscObject)viewer)->comm,"Elemental matrix (explicit ordering)\n");CHKERRQ(ierr); 97 ierr = MatComputeExplicitOperator(A,&Aaij);CHKERRQ(ierr); 98 ierr = MatView(Aaij,viewer);CHKERRQ(ierr); 99 ierr = MatDestroy(&Aaij);CHKERRQ(ierr); 100 } 101 PetscFunctionReturn(0); 102 } 103 104 #undef __FUNCT__ 105 #define __FUNCT__ "MatGetInfo_Elemental" 106 static PetscErrorCode MatGetInfo_Elemental(Mat A,MatInfoType flag,MatInfo *info) 107 { 108 Mat_Elemental *a = (Mat_Elemental*)A->data; 109 PetscMPIInt rank; 110 111 PetscFunctionBegin; 112 MPI_Comm_rank(((PetscObject)A)->comm,&rank); 113 114 /* if (!rank) printf(" .........MatGetInfo_Elemental ...\n"); */ 115 info->block_size = 1.0; /* ? */ 116 117 if (flag == MAT_LOCAL) { 118 info->nz_allocated = (double)(*a->emat).AllocatedMemory(); /* locally allocated */ 119 info->nz_used = info->nz_allocated; 120 } else if (flag == MAT_GLOBAL_MAX) { 121 //ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr); 122 /* see MatGetInfo_MPIAIJ() for getting global info->nz_allocated! */ 123 //SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP," MAT_GLOBAL_MAX not written yet"); 124 } else if (flag == MAT_GLOBAL_SUM) { 125 //SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP," MAT_GLOBAL_SUM not written yet"); 126 info->nz_allocated = (double)(*a->emat).AllocatedMemory(); /* locally allocated */ 127 info->nz_used = info->nz_allocated; /* assume Elemental does accurate allocation */ 128 //ierr = MPI_Allreduce(isend,irecv,1,MPIU_REAL,MPIU_SUM,((PetscObject)A)->comm);CHKERRQ(ierr); 129 //PetscPrintf(PETSC_COMM_SELF," ... [%d] locally allocated %g\n",rank,info->nz_allocated); 130 } 131 132 info->nz_unneeded = 0.0; 133 info->assemblies = (double)A->num_ass; 134 info->mallocs = 0; 135 info->memory = ((PetscObject)A)->mem; 136 info->fill_ratio_given = 0; /* determined by Elemental */ 137 info->fill_ratio_needed = 0; 138 info->factor_mallocs = 0; 139 PetscFunctionReturn(0); 140 } 141 142 #undef __FUNCT__ 143 #define __FUNCT__ "MatSetValues_Elemental" 144 static PetscErrorCode MatSetValues_Elemental(Mat A,PetscInt nr,const PetscInt *rows,PetscInt nc,const PetscInt *cols,const PetscScalar *vals,InsertMode imode) 145 { 146 PetscErrorCode ierr; 147 Mat_Elemental *a = (Mat_Elemental*)A->data; 148 PetscMPIInt rank; 149 PetscInt i,j,rrank,ridx,crank,cidx; 150 151 PetscFunctionBegin; 152 ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 153 154 const elem::Grid &grid = a->emat->Grid(); 155 for (i=0; i<nr; i++) { 156 PetscInt erow,ecol,elrow,elcol; 157 if (rows[i] < 0) continue; 158 P2RO(A,0,rows[i],&rrank,&ridx); 159 RO2E(A,0,rrank,ridx,&erow); 160 if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_PLIB,"Incorrect row translation"); 161 for (j=0; j<nc; j++) { 162 if (cols[j] < 0) continue; 163 P2RO(A,1,cols[j],&crank,&cidx); 164 RO2E(A,1,crank,cidx,&ecol); 165 if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_PLIB,"Incorrect col translation"); 166 if (erow % grid.MCSize() != grid.MCRank() || ecol % grid.MRSize() != grid.MRRank()){ /* off-proc entry */ 167 if (imode != ADD_VALUES) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only ADD_VALUES to off-processor entry is supported"); 168 /* PetscPrintf(PETSC_COMM_SELF,"[%D] add off-proc entry (%D,%D, %g) (%D %D)\n",rank,rows[i],cols[j],*(vals+i*nc),erow,ecol); */ 169 a->esubmat->Set(0,0, (PetscElemScalar)vals[i*nc+j]); 170 a->interface->Axpy(1.0,*(a->esubmat),erow,ecol); 171 continue; 172 } 173 elrow = erow / grid.MCSize(); 174 elcol = ecol / grid.MRSize(); 175 switch (imode) { 176 case INSERT_VALUES: a->emat->SetLocal(elrow,elcol,(PetscElemScalar)vals[i*nc+j]); break; 177 case ADD_VALUES: a->emat->UpdateLocal(elrow,elcol,(PetscElemScalar)vals[i*nc+j]); break; 178 default: SETERRQ1(((PetscObject)A)->comm,PETSC_ERR_SUP,"No support for InsertMode %d",(int)imode); 179 } 180 } 181 } 182 PetscFunctionReturn(0); 183 } 184 185 #undef __FUNCT__ 186 #define __FUNCT__ "MatMult_Elemental" 187 static PetscErrorCode MatMult_Elemental(Mat A,Vec X,Vec Y) 188 { 189 Mat_Elemental *a = (Mat_Elemental*)A->data; 190 PetscErrorCode ierr; 191 const PetscElemScalar *x; 192 PetscElemScalar *y; 193 PetscElemScalar one = 1,zero = 0; 194 195 PetscFunctionBegin; 196 ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 197 ierr = VecGetArray(Y,(PetscScalar **)&y);CHKERRQ(ierr); 198 { /* Scoping so that constructor is called before pointer is returned */ 199 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->cmap->N,1,0,x,A->cmap->n,*a->grid); 200 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ye(A->rmap->N,1,0,y,A->rmap->n,*a->grid); 201 elem::Gemv(elem::NORMAL,one,*a->emat,xe,zero,ye); 202 } 203 ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 204 ierr = VecRestoreArray(Y,(PetscScalar **)&y);CHKERRQ(ierr); 205 PetscFunctionReturn(0); 206 } 207 208 #undef __FUNCT__ 209 #define __FUNCT__ "MatMultTranspose_Elemental" 210 static PetscErrorCode MatMultTranspose_Elemental(Mat A,Vec X,Vec Y) 211 { 212 Mat_Elemental *a = (Mat_Elemental*)A->data; 213 PetscErrorCode ierr; 214 const PetscElemScalar *x; 215 PetscElemScalar *y; 216 PetscElemScalar one = 1,zero = 0; 217 218 PetscFunctionBegin; 219 ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 220 ierr = VecGetArray(Y,(PetscScalar **)&y);CHKERRQ(ierr); 221 { /* Scoping so that constructor is called before pointer is returned */ 222 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,x,A->rmap->n,*a->grid); 223 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ye(A->cmap->N,1,0,y,A->cmap->n,*a->grid); 224 elem::Gemv(elem::TRANSPOSE,one,*a->emat,xe,zero,ye); 225 } 226 ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 227 ierr = VecRestoreArray(Y,(PetscScalar **)&y);CHKERRQ(ierr); 228 PetscFunctionReturn(0); 229 } 230 231 #undef __FUNCT__ 232 #define __FUNCT__ "MatMultAdd_Elemental" 233 static PetscErrorCode MatMultAdd_Elemental(Mat A,Vec X,Vec Y,Vec Z) 234 { 235 Mat_Elemental *a = (Mat_Elemental*)A->data; 236 PetscErrorCode ierr; 237 const PetscElemScalar *x; 238 PetscElemScalar *z; 239 PetscElemScalar one = 1; 240 241 PetscFunctionBegin; 242 if (Y != Z) {ierr = VecCopy(Y,Z);CHKERRQ(ierr);} 243 ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 244 ierr = VecGetArray(Z,(PetscScalar **)&z);CHKERRQ(ierr); 245 { /* Scoping so that constructor is called before pointer is returned */ 246 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->cmap->N,1,0,x,A->cmap->n,*a->grid); 247 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ze(A->rmap->N,1,0,z,A->rmap->n,*a->grid); 248 elem::Gemv(elem::NORMAL,one,*a->emat,xe,one,ze); 249 } 250 ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 251 ierr = VecRestoreArray(Z,(PetscScalar **)&z);CHKERRQ(ierr); 252 PetscFunctionReturn(0); 253 } 254 255 #undef __FUNCT__ 256 #define __FUNCT__ "MatMultTransposeAdd_Elemental" 257 static PetscErrorCode MatMultTransposeAdd_Elemental(Mat A,Vec X,Vec Y,Vec Z) 258 { 259 Mat_Elemental *a = (Mat_Elemental*)A->data; 260 PetscErrorCode ierr; 261 const PetscElemScalar *x; 262 PetscElemScalar *z; 263 PetscElemScalar one = 1; 264 265 PetscFunctionBegin; 266 if (Y != Z) {ierr = VecCopy(Y,Z);CHKERRQ(ierr);} 267 ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 268 ierr = VecGetArray(Z,(PetscScalar **)&z);CHKERRQ(ierr); 269 { /* Scoping so that constructor is called before pointer is returned */ 270 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,x,A->rmap->n,*a->grid); 271 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ze(A->cmap->N,1,0,z,A->cmap->n,*a->grid); 272 elem::Gemv(elem::TRANSPOSE,one,*a->emat,xe,one,ze); 273 } 274 ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 275 ierr = VecRestoreArray(Z,(PetscScalar **)&z);CHKERRQ(ierr); 276 PetscFunctionReturn(0); 277 } 278 279 #undef __FUNCT__ 280 #define __FUNCT__ "MatMatMultNumeric_Elemental" 281 static PetscErrorCode MatMatMultNumeric_Elemental(Mat A,Mat B,Mat C) 282 { 283 Mat_Elemental *a = (Mat_Elemental*)A->data; 284 Mat_Elemental *b = (Mat_Elemental*)B->data; 285 Mat_Elemental *c = (Mat_Elemental*)C->data; 286 PetscElemScalar one = 1,zero = 0; 287 288 PetscFunctionBegin; 289 { /* Scoping so that constructor is called before pointer is returned */ 290 elem::Gemm(elem::NORMAL,elem::NORMAL,one,*a->emat,*b->emat,zero,*c->emat); 291 } 292 C->assembled = PETSC_TRUE; 293 PetscFunctionReturn(0); 294 } 295 296 #undef __FUNCT__ 297 #define __FUNCT__ "MatMatMultSymbolic_Elemental" 298 static PetscErrorCode MatMatMultSymbolic_Elemental(Mat A,Mat B,PetscReal fill,Mat *C) 299 { 300 PetscErrorCode ierr; 301 Mat Ce; 302 MPI_Comm comm=((PetscObject)A)->comm; 303 304 PetscFunctionBegin; 305 ierr = MatCreate(comm,&Ce);CHKERRQ(ierr); 306 ierr = MatSetSizes(Ce,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 307 ierr = MatSetType(Ce,MATELEMENTAL);CHKERRQ(ierr); 308 ierr = MatSetUp(Ce);CHKERRQ(ierr); 309 *C = Ce; 310 PetscFunctionReturn(0); 311 } 312 313 #undef __FUNCT__ 314 #define __FUNCT__ "MatMatMult_Elemental" 315 static PetscErrorCode MatMatMult_Elemental(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 316 { 317 PetscErrorCode ierr; 318 319 PetscFunctionBegin; 320 if (scall == MAT_INITIAL_MATRIX){ 321 ierr = PetscLogEventBegin(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 322 ierr = MatMatMultSymbolic_Elemental(A,B,1.0,C);CHKERRQ(ierr); 323 ierr = PetscLogEventEnd(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 324 } 325 ierr = PetscLogEventBegin(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 326 ierr = MatMatMultNumeric_Elemental(A,B,*C);CHKERRQ(ierr); 327 ierr = PetscLogEventEnd(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 328 PetscFunctionReturn(0); 329 } 330 331 #undef __FUNCT__ 332 #define __FUNCT__ "MatMatTransposeMultNumeric_Elemental" 333 static PetscErrorCode MatMatTransposeMultNumeric_Elemental(Mat A,Mat B,Mat C) 334 { 335 Mat_Elemental *a = (Mat_Elemental*)A->data; 336 Mat_Elemental *b = (Mat_Elemental*)B->data; 337 Mat_Elemental *c = (Mat_Elemental*)C->data; 338 PetscElemScalar one = 1,zero = 0; 339 340 PetscFunctionBegin; 341 { /* Scoping so that constructor is called before pointer is returned */ 342 elem::Gemm(elem::NORMAL,elem::TRANSPOSE,one,*a->emat,*b->emat,zero,*c->emat); 343 } 344 C->assembled = PETSC_TRUE; 345 PetscFunctionReturn(0); 346 } 347 348 #undef __FUNCT__ 349 #define __FUNCT__ "MatMatTransposeMultSymbolic_Elemental" 350 static PetscErrorCode MatMatTransposeMultSymbolic_Elemental(Mat A,Mat B,PetscReal fill,Mat *C) 351 { 352 PetscErrorCode ierr; 353 Mat Ce; 354 MPI_Comm comm=((PetscObject)A)->comm; 355 356 PetscFunctionBegin; 357 ierr = MatCreate(comm,&Ce);CHKERRQ(ierr); 358 ierr = MatSetSizes(Ce,A->rmap->n,B->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 359 ierr = MatSetType(Ce,MATELEMENTAL);CHKERRQ(ierr); 360 ierr = MatSetUp(Ce);CHKERRQ(ierr); 361 *C = Ce; 362 PetscFunctionReturn(0); 363 } 364 365 #undef __FUNCT__ 366 #define __FUNCT__ "MatMatTransposeMult_Elemental" 367 static PetscErrorCode MatMatTransposeMult_Elemental(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 368 { 369 PetscErrorCode ierr; 370 371 PetscFunctionBegin; 372 if (scall == MAT_INITIAL_MATRIX){ 373 ierr = PetscLogEventBegin(MAT_MatTransposeMultSymbolic,A,B,0,0);CHKERRQ(ierr); 374 ierr = MatMatMultSymbolic_Elemental(A,B,1.0,C);CHKERRQ(ierr); 375 ierr = PetscLogEventEnd(MAT_MatTransposeMultSymbolic,A,B,0,0);CHKERRQ(ierr); 376 } 377 ierr = PetscLogEventBegin(MAT_MatTransposeMultNumeric,A,B,0,0);CHKERRQ(ierr); 378 ierr = MatMatTransposeMultNumeric_Elemental(A,B,*C);CHKERRQ(ierr); 379 ierr = PetscLogEventEnd(MAT_MatTransposeMultNumeric,A,B,0,0);CHKERRQ(ierr); 380 PetscFunctionReturn(0); 381 } 382 383 #undef __FUNCT__ 384 #define __FUNCT__ "MatScale_Elemental" 385 static PetscErrorCode MatScale_Elemental(Mat X,PetscScalar a) 386 { 387 Mat_Elemental *x = (Mat_Elemental*)X->data; 388 389 PetscFunctionBegin; 390 elem::Scal((PetscElemScalar)a,*x->emat); 391 PetscFunctionReturn(0); 392 } 393 394 #undef __FUNCT__ 395 #define __FUNCT__ "MatAXPY_Elemental" 396 static PetscErrorCode MatAXPY_Elemental(Mat Y,PetscScalar a,Mat X,MatStructure str) 397 { 398 Mat_Elemental *x = (Mat_Elemental*)X->data; 399 Mat_Elemental *y = (Mat_Elemental*)Y->data; 400 401 PetscFunctionBegin; 402 elem::Axpy((PetscElemScalar)a,*x->emat,*y->emat); 403 PetscFunctionReturn(0); 404 } 405 406 #undef __FUNCT__ 407 #define __FUNCT__ "MatCopy_Elemental" 408 static PetscErrorCode MatCopy_Elemental(Mat A,Mat B,MatStructure str) 409 { 410 Mat_Elemental *a=(Mat_Elemental*)A->data; 411 Mat_Elemental *b=(Mat_Elemental*)B->data; 412 413 PetscFunctionBegin; 414 elem::Copy(*a->emat,*b->emat); 415 PetscFunctionReturn(0); 416 } 417 418 #undef __FUNCT__ 419 #define __FUNCT__ "MatDuplicate_Elemental" 420 static PetscErrorCode MatDuplicate_Elemental(Mat A,MatDuplicateOption op,Mat *B) 421 { 422 Mat Be; 423 MPI_Comm comm=((PetscObject)A)->comm; 424 Mat_Elemental *a=(Mat_Elemental*)A->data; 425 PetscErrorCode ierr; 426 427 PetscFunctionBegin; 428 ierr = MatCreate(comm,&Be);CHKERRQ(ierr); 429 ierr = MatSetSizes(Be,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 430 ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr); 431 ierr = MatSetUp(Be);CHKERRQ(ierr); 432 *B = Be; 433 if (op == MAT_COPY_VALUES) { 434 Mat_Elemental *b=(Mat_Elemental*)Be->data; 435 elem::Copy(*a->emat,*b->emat); 436 } 437 Be->assembled = PETSC_TRUE; 438 PetscFunctionReturn(0); 439 } 440 441 #undef __FUNCT__ 442 #define __FUNCT__ "MatTranspose_Elemental" 443 static PetscErrorCode MatTranspose_Elemental(Mat A,MatReuse reuse,Mat *B) 444 { 445 /* Only out-of-place supported */ 446 Mat Be; 447 PetscErrorCode ierr; 448 MPI_Comm comm=((PetscObject)A)->comm; 449 Mat_Elemental *a = (Mat_Elemental*)A->data, *b; 450 451 PetscFunctionBegin; 452 if (reuse == MAT_INITIAL_MATRIX){ 453 ierr = MatCreate(comm,&Be);CHKERRQ(ierr); 454 ierr = MatSetSizes(Be,A->cmap->n,A->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 455 ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr); 456 ierr = MatSetUp(Be);CHKERRQ(ierr); 457 *B = Be; 458 } 459 b = (Mat_Elemental*)Be->data; 460 elem::Transpose(*a->emat,*b->emat); 461 Be->assembled = PETSC_TRUE; 462 PetscFunctionReturn(0); 463 } 464 465 #undef __FUNCT__ 466 #define __FUNCT__ "MatConjugate_Elemental" 467 static PetscErrorCode MatConjugate_Elemental(Mat A) 468 { 469 Mat_Elemental *a = (Mat_Elemental*)A->data; 470 471 PetscFunctionBegin; 472 elem::Conjugate(*a->emat); 473 PetscFunctionReturn(0); 474 } 475 476 #undef __FUNCT__ 477 #define __FUNCT__ "MatHermitianTranspose_Elemental" 478 static PetscErrorCode MatHermitianTranspose_Elemental(Mat A,MatReuse reuse,Mat *B) 479 { 480 /* Only out-of-place supported */ 481 Mat Be; 482 PetscErrorCode ierr; 483 MPI_Comm comm=((PetscObject)A)->comm; 484 Mat_Elemental *a = (Mat_Elemental*)A->data, *b; 485 486 PetscFunctionBegin; 487 if (reuse == MAT_INITIAL_MATRIX){ 488 ierr = MatCreate(comm,&Be);CHKERRQ(ierr); 489 ierr = MatSetSizes(Be,A->cmap->n,A->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 490 ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr); 491 ierr = MatSetUp(Be);CHKERRQ(ierr); 492 *B = Be; 493 } 494 b = (Mat_Elemental*)Be->data; 495 elem::Adjoint(*a->emat,*b->emat); 496 Be->assembled = PETSC_TRUE; 497 PetscFunctionReturn(0); 498 } 499 500 #undef __FUNCT__ 501 #define __FUNCT__ "MatSolve_Elemental" 502 static PetscErrorCode MatSolve_Elemental(Mat A,Vec B,Vec X) 503 { 504 Mat_Elemental *a = (Mat_Elemental*)A->data; 505 PetscErrorCode ierr; 506 PetscElemScalar *x; 507 508 PetscFunctionBegin; 509 ierr = VecCopy(B,X);CHKERRQ(ierr); 510 ierr = VecGetArray(X,(PetscScalar **)&x);CHKERRQ(ierr); 511 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,x,A->rmap->n,*a->grid); 512 elem::DistMatrix<PetscElemScalar,elem::MC,elem::MR> xer = xe; 513 switch (A->factortype) { 514 case MAT_FACTOR_LU: 515 if ((*a->pivot).AllocatedMemory()) { 516 elem::SolveAfterLU(elem::NORMAL,*a->emat,*a->pivot,xer); 517 elem::Copy(xer,xe); 518 } else { 519 elem::SolveAfterLU(elem::NORMAL,*a->emat,xer); 520 elem::Copy(xer,xe); 521 } 522 break; 523 case MAT_FACTOR_CHOLESKY: 524 elem::SolveAfterCholesky(elem::UPPER,elem::NORMAL,*a->emat,xer); 525 elem::Copy(xer,xe); 526 break; 527 default: 528 SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unfactored Matrix or Unsupported MatFactorType"); 529 break; 530 } 531 ierr = VecRestoreArray(X,(PetscScalar **)&x);CHKERRQ(ierr); 532 PetscFunctionReturn(0); 533 } 534 535 #undef __FUNCT__ 536 #define __FUNCT__ "MatSolveAdd_Elemental" 537 static PetscErrorCode MatSolveAdd_Elemental(Mat A,Vec B,Vec Y,Vec X) 538 { 539 PetscErrorCode ierr; 540 541 PetscFunctionBegin; 542 ierr = MatSolve_Elemental(A,B,X);CHKERRQ(ierr); 543 ierr = VecAXPY(X,1,Y);CHKERRQ(ierr); 544 PetscFunctionReturn(0); 545 } 546 547 #undef __FUNCT__ 548 #define __FUNCT__ "MatMatSolve_Elemental" 549 static PetscErrorCode MatMatSolve_Elemental(Mat A,Mat B,Mat X) 550 { 551 Mat_Elemental *a=(Mat_Elemental*)A->data; 552 Mat_Elemental *b=(Mat_Elemental*)B->data; 553 Mat_Elemental *x=(Mat_Elemental*)X->data; 554 555 PetscFunctionBegin; 556 elem::Copy(*b->emat,*x->emat); 557 switch (A->factortype) { 558 case MAT_FACTOR_LU: 559 if ((*a->pivot).AllocatedMemory()) { 560 elem::SolveAfterLU(elem::NORMAL,*a->emat,*a->pivot,*x->emat); 561 } else { 562 elem::SolveAfterLU(elem::NORMAL,*a->emat,*x->emat); 563 } 564 break; 565 case MAT_FACTOR_CHOLESKY: 566 elem::SolveAfterCholesky(elem::UPPER,elem::NORMAL,*a->emat,*x->emat); 567 break; 568 default: 569 SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unfactored Matrix or Unsupported MatFactorType"); 570 break; 571 } 572 PetscFunctionReturn(0); 573 } 574 575 #undef __FUNCT__ 576 #define __FUNCT__ "MatLUFactor_Elemental" 577 static PetscErrorCode MatLUFactor_Elemental(Mat A,IS row,IS col,const MatFactorInfo *info) 578 { 579 Mat_Elemental *a = (Mat_Elemental*)A->data; 580 581 PetscFunctionBegin; 582 if (info->dtcol){ 583 elem::LU(*a->emat,*a->pivot); 584 } else { 585 elem::LU(*a->emat); 586 } 587 A->factortype = MAT_FACTOR_LU; 588 A->assembled = PETSC_TRUE; 589 PetscFunctionReturn(0); 590 } 591 592 #undef __FUNCT__ 593 #define __FUNCT__ "MatLUFactorNumeric_Elemental" 594 static PetscErrorCode MatLUFactorNumeric_Elemental(Mat F,Mat A,const MatFactorInfo *info) 595 { 596 PetscErrorCode ierr; 597 598 PetscFunctionBegin; 599 ierr = MatCopy(A,F,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 600 ierr = MatLUFactor_Elemental(F,0,0,info);CHKERRQ(ierr); 601 PetscFunctionReturn(0); 602 } 603 604 #undef __FUNCT__ 605 #define __FUNCT__ "MatLUFactorSymbolic_Elemental" 606 static PetscErrorCode MatLUFactorSymbolic_Elemental(Mat F,Mat A,IS r,IS c,const MatFactorInfo *info) 607 { 608 PetscFunctionBegin; 609 /* F is create and allocated by MatGetFactor_elemental_petsc(), skip this routine. */ 610 PetscFunctionReturn(0); 611 } 612 613 #undef __FUNCT__ 614 #define __FUNCT__ "MatCholeskyFactor_Elemental" 615 static PetscErrorCode MatCholeskyFactor_Elemental(Mat A,IS perm,const MatFactorInfo *info) 616 { 617 Mat_Elemental *a = (Mat_Elemental*)A->data; 618 elem::DistMatrix<PetscElemScalar,elem::MC,elem::STAR> d; 619 620 PetscFunctionBegin; 621 elem::Cholesky(elem::UPPER,*a->emat); 622 A->factortype = MAT_FACTOR_CHOLESKY; 623 A->assembled = PETSC_TRUE; 624 PetscFunctionReturn(0); 625 } 626 627 #undef __FUNCT__ 628 #define __FUNCT__ "MatCholeskyFactorNumeric_Elemental" 629 static PetscErrorCode MatCholeskyFactorNumeric_Elemental(Mat F,Mat A,const MatFactorInfo *info) 630 { 631 PetscErrorCode ierr; 632 633 PetscFunctionBegin; 634 ierr = MatCopy(A,F,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 635 ierr = MatCholeskyFactor_Elemental(F,0,info);CHKERRQ(ierr); 636 PetscFunctionReturn(0); 637 } 638 639 #undef __FUNCT__ 640 #define __FUNCT__ "MatCholeskyFactorSymbolic_Elemental" 641 static PetscErrorCode MatCholeskyFactorSymbolic_Elemental(Mat F,Mat A,IS perm,const MatFactorInfo *info) 642 { 643 PetscFunctionBegin; 644 /* F is create and allocated by MatGetFactor_elemental_petsc(), skip this routine. */ 645 PetscFunctionReturn(0); 646 } 647 648 EXTERN_C_BEGIN 649 #undef __FUNCT__ 650 #define __FUNCT__ "MatFactorGetSolverPackage_elemental_elemental" 651 PetscErrorCode MatFactorGetSolverPackage_elemental_elemental(Mat A,const MatSolverPackage *type) 652 { 653 PetscFunctionBegin; 654 *type = MATSOLVERELEMENTAL; 655 PetscFunctionReturn(0); 656 } 657 EXTERN_C_END 658 659 EXTERN_C_BEGIN 660 #undef __FUNCT__ 661 #define __FUNCT__ "MatGetFactor_elemental_elemental" 662 static PetscErrorCode MatGetFactor_elemental_elemental(Mat A,MatFactorType ftype,Mat *F) 663 { 664 Mat B; 665 PetscErrorCode ierr; 666 667 PetscFunctionBegin; 668 /* Create the factorization matrix */ 669 ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr); 670 ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 671 ierr = MatSetType(B,MATELEMENTAL);CHKERRQ(ierr); 672 ierr = MatSetUp(B);CHKERRQ(ierr); 673 B->factortype = ftype; 674 ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatFactorGetSolverPackage_C","MatFactorGetSolverPackage_elemental_elemental",MatFactorGetSolverPackage_elemental_elemental);CHKERRQ(ierr); 675 *F = B; 676 PetscFunctionReturn(0); 677 } 678 EXTERN_C_END 679 680 #undef __FUNCT__ 681 #define __FUNCT__ "MatNorm_Elemental" 682 static PetscErrorCode MatNorm_Elemental(Mat A,NormType type,PetscReal *nrm) 683 { 684 Mat_Elemental *a=(Mat_Elemental*)A->data; 685 686 PetscFunctionBegin; 687 switch (type){ 688 case NORM_1: 689 *nrm = elem::Norm(*a->emat,elem::ONE_NORM); 690 break; 691 case NORM_FROBENIUS: 692 *nrm = elem::Norm(*a->emat,elem::FROBENIUS_NORM); 693 break; 694 case NORM_INFINITY: 695 *nrm = elem::Norm(*a->emat,elem::INFINITY_NORM); 696 break; 697 default: 698 printf("Error: unsupported norm type!\n"); 699 } 700 PetscFunctionReturn(0); 701 } 702 703 #undef __FUNCT__ 704 #define __FUNCT__ "MatZeroEntries_Elemental" 705 static PetscErrorCode MatZeroEntries_Elemental(Mat A) 706 { 707 Mat_Elemental *a=(Mat_Elemental*)A->data; 708 709 PetscFunctionBegin; 710 elem::Zero(*a->emat); 711 PetscFunctionReturn(0); 712 } 713 714 EXTERN_C_BEGIN 715 #undef __FUNCT__ 716 #define __FUNCT__ "MatGetOwnershipIS_Elemental" 717 static PetscErrorCode MatGetOwnershipIS_Elemental(Mat A,IS *rows,IS *cols) 718 { 719 Mat_Elemental *a = (Mat_Elemental*)A->data; 720 PetscErrorCode ierr; 721 PetscInt i,m,shift,stride,*idx; 722 723 PetscFunctionBegin; 724 if (rows) { 725 m = a->emat->LocalHeight(); 726 shift = a->emat->ColShift(); 727 stride = a->emat->ColStride(); 728 ierr = PetscMalloc(m*sizeof(PetscInt),&idx);CHKERRQ(ierr); 729 for (i=0; i<m; i++) { 730 PetscInt rank,offset; 731 E2RO(A,0,shift+i*stride,&rank,&offset); 732 RO2P(A,0,rank,offset,&idx[i]); 733 } 734 ierr = ISCreateGeneral(PETSC_COMM_SELF,m,idx,PETSC_OWN_POINTER,rows);CHKERRQ(ierr); 735 } 736 if (cols) { 737 m = a->emat->LocalWidth(); 738 shift = a->emat->RowShift(); 739 stride = a->emat->RowStride(); 740 ierr = PetscMalloc(m*sizeof(PetscInt),&idx);CHKERRQ(ierr); 741 for (i=0; i<m; i++) { 742 PetscInt rank,offset; 743 E2RO(A,1,shift+i*stride,&rank,&offset); 744 RO2P(A,1,rank,offset,&idx[i]); 745 } 746 ierr = ISCreateGeneral(PETSC_COMM_SELF,m,idx,PETSC_OWN_POINTER,cols);CHKERRQ(ierr); 747 } 748 PetscFunctionReturn(0); 749 } 750 EXTERN_C_END 751 752 #undef __FUNCT__ 753 #define __FUNCT__ "MatConvert_Elemental_Dense" 754 static PetscErrorCode MatConvert_Elemental_Dense(Mat A,const MatType newtype,MatReuse reuse,Mat *B) 755 { 756 Mat Bmpi; 757 Mat_Elemental *a = (Mat_Elemental*)A->data; 758 MPI_Comm comm=((PetscObject)A)->comm; 759 PetscErrorCode ierr; 760 PetscInt rrank,ridx,crank,cidx,nrows,ncols,i,j; 761 PetscElemScalar v; 762 763 PetscFunctionBegin; 764 if (strcmp(newtype,MATDENSE) && strcmp(newtype,MATSEQDENSE) && strcmp(newtype,MATMPIDENSE)) { 765 SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unsupported New MatType: must be MATDENSE, MATSEQDENSE or MATMPIDENSE"); 766 } 767 ierr = MatCreate(comm,&Bmpi);CHKERRQ(ierr); 768 ierr = MatSetSizes(Bmpi,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 769 ierr = MatSetType(Bmpi,MATDENSE);CHKERRQ(ierr); 770 ierr = MatSetUp(Bmpi);CHKERRQ(ierr); 771 ierr = MatGetSize(A,&nrows,&ncols);CHKERRQ(ierr); 772 for (i=0; i<nrows; i++) { 773 PetscInt erow,ecol; 774 P2RO(A,0,i,&rrank,&ridx); 775 RO2E(A,0,rrank,ridx,&erow); 776 if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect row translation"); 777 for (j=0; j<ncols; j++) { 778 P2RO(A,1,j,&crank,&cidx); 779 RO2E(A,1,crank,cidx,&ecol); 780 if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect col translation"); 781 v = a->emat->Get(erow,ecol); 782 ierr = MatSetValues(Bmpi,1,&i,1,&j,(PetscScalar *)&v,INSERT_VALUES);CHKERRQ(ierr); 783 } 784 } 785 ierr = MatAssemblyBegin(Bmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 786 ierr = MatAssemblyEnd(Bmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 787 if (reuse == MAT_REUSE_MATRIX) { 788 ierr = MatHeaderReplace(A,Bmpi);CHKERRQ(ierr); 789 } else { 790 *B = Bmpi; 791 } 792 PetscFunctionReturn(0); 793 } 794 795 #undef __FUNCT__ 796 #define __FUNCT__ "MatDestroy_Elemental" 797 static PetscErrorCode MatDestroy_Elemental(Mat A) 798 { 799 Mat_Elemental *a = (Mat_Elemental*)A->data; 800 PetscErrorCode ierr; 801 Mat_Elemental_Grid *commgrid; 802 PetscBool flg; 803 MPI_Comm icomm; 804 805 PetscFunctionBegin; 806 a->interface->Detach(); 807 delete a->interface; 808 delete a->esubmat; 809 delete a->emat; 810 811 elem::mpi::Comm cxxcomm(((PetscObject)A)->comm); 812 ierr = PetscCommDuplicate(cxxcomm,&icomm,PETSC_NULL);CHKERRQ(ierr); 813 ierr = MPI_Attr_get(icomm,Petsc_Elemental_keyval,(void**)&commgrid,(int*)&flg);CHKERRQ(ierr); 814 if (--commgrid->grid_refct == 0) { 815 delete commgrid->grid; 816 ierr = PetscFree(commgrid);CHKERRQ(ierr); 817 } 818 ierr = PetscCommDestroy(&icomm);CHKERRQ(ierr); 819 ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetOwnershipIS_C","",PETSC_NULL);CHKERRQ(ierr); 820 ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetFactor_petsc_C","",PETSC_NULL);CHKERRQ(ierr); 821 ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatFactorGetSolverPackage_C","",PETSC_NULL);CHKERRQ(ierr); 822 ierr = PetscFree(A->data);CHKERRQ(ierr); 823 PetscFunctionReturn(0); 824 } 825 826 #undef __FUNCT__ 827 #define __FUNCT__ "MatSetUp_Elemental" 828 PetscErrorCode MatSetUp_Elemental(Mat A) 829 { 830 Mat_Elemental *a = (Mat_Elemental*)A->data; 831 PetscErrorCode ierr; 832 PetscMPIInt rsize,csize; 833 834 PetscFunctionBegin; 835 ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 836 ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 837 838 a->emat->ResizeTo(A->rmap->N,A->cmap->N);CHKERRQ(ierr); 839 elem::Zero(*a->emat); 840 841 ierr = MPI_Comm_size(A->rmap->comm,&rsize);CHKERRQ(ierr); 842 ierr = MPI_Comm_size(A->cmap->comm,&csize);CHKERRQ(ierr); 843 if (csize != rsize) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_ARG_INCOMP,"Cannot use row and column communicators of different sizes"); 844 a->commsize = rsize; 845 a->mr[0] = A->rmap->N % rsize; if (!a->mr[0]) a->mr[0] = rsize; 846 a->mr[1] = A->cmap->N % csize; if (!a->mr[1]) a->mr[1] = csize; 847 a->m[0] = A->rmap->N / rsize + (a->mr[0] != rsize); 848 a->m[1] = A->cmap->N / csize + (a->mr[1] != csize); 849 PetscFunctionReturn(0); 850 } 851 852 #undef __FUNCT__ 853 #define __FUNCT__ "MatAssemblyBegin_Elemental" 854 PetscErrorCode MatAssemblyBegin_Elemental(Mat A, MatAssemblyType type) 855 { 856 Mat_Elemental *a = (Mat_Elemental*)A->data; 857 858 PetscFunctionBegin; 859 a->interface->Detach(); 860 a->interface->Attach(elem::LOCAL_TO_GLOBAL,*(a->emat)); 861 PetscFunctionReturn(0); 862 } 863 864 #undef __FUNCT__ 865 #define __FUNCT__ "MatAssemblyEnd_Elemental" 866 PetscErrorCode MatAssemblyEnd_Elemental(Mat A, MatAssemblyType type) 867 { 868 PetscFunctionBegin; 869 /* Currently does nothing */ 870 PetscFunctionReturn(0); 871 } 872 873 /* -------------------------------------------------------------------*/ 874 static struct _MatOps MatOps_Values = { 875 MatSetValues_Elemental, 876 0, 877 0, 878 MatMult_Elemental, 879 /* 4*/ MatMultAdd_Elemental, 880 MatMultTranspose_Elemental, 881 MatMultTransposeAdd_Elemental, 882 MatSolve_Elemental, 883 MatSolveAdd_Elemental, 884 0, //MatSolveTranspose_Elemental, 885 /*10*/ 0, //MatSolveTransposeAdd_Elemental, 886 MatLUFactor_Elemental, 887 MatCholeskyFactor_Elemental, 888 0, 889 MatTranspose_Elemental, 890 /*15*/ MatGetInfo_Elemental, 891 0, 892 0, //MatGetDiagonal_Elemental,? 893 0, //MatDiagonalScale_Elemental,? 894 MatNorm_Elemental, 895 /*20*/ MatAssemblyBegin_Elemental, 896 MatAssemblyEnd_Elemental, 897 0, //MatSetOption_Elemental, 898 MatZeroEntries_Elemental, 899 /*24*/ 0, 900 MatLUFactorSymbolic_Elemental, 901 MatLUFactorNumeric_Elemental, 902 MatCholeskyFactorSymbolic_Elemental, 903 MatCholeskyFactorNumeric_Elemental, 904 /*29*/ MatSetUp_Elemental, 905 0, 906 0, 907 0, 908 0, 909 /*34*/ MatDuplicate_Elemental, 910 0, 911 0, 912 0, 913 0, 914 /*39*/ MatAXPY_Elemental, 915 0, 916 0, 917 0, 918 MatCopy_Elemental, 919 /*44*/ 0, 920 MatScale_Elemental, 921 0, 922 0, 923 0, 924 /*49*/ 0, 925 0, 926 0, 927 0, 928 0, 929 /*54*/ 0, 930 0, 931 0, 932 0, 933 0, 934 /*59*/ 0, 935 MatDestroy_Elemental, 936 MatView_Elemental, 937 0, 938 0, 939 /*64*/ 0, 940 0, 941 0, 942 0, 943 0, 944 /*69*/ 0, 945 0, 946 MatConvert_Elemental_Dense, 947 0, 948 0, 949 /*74*/ 0, 950 0, 951 0, 952 0, 953 0, 954 /*79*/ 0, 955 0, 956 0, 957 0, 958 0, 959 /*84*/ 0, 960 0, 961 0, 962 0, 963 0, 964 /*89*/ MatMatMult_Elemental, 965 MatMatMultSymbolic_Elemental, 966 MatMatMultNumeric_Elemental, 967 0, 968 0, 969 /*94*/ 0, 970 MatMatTransposeMult_Elemental, 971 MatMatTransposeMultSymbolic_Elemental, 972 MatMatTransposeMultNumeric_Elemental, 973 0, 974 /*99*/ 0, 975 0, 976 0, 977 MatConjugate_Elemental, 978 0, 979 /*104*/0, 980 0, 981 0, 982 0, 983 0, 984 /*109*/MatMatSolve_Elemental, 985 0, 986 0, 987 0, 988 0, 989 /*114*/0, 990 0, 991 0, 992 0, 993 0, 994 /*119*/0, 995 MatHermitianTranspose_Elemental, 996 0, 997 0, 998 0, 999 /*124*/0, 1000 0, 1001 0, 1002 0, 1003 0, 1004 /*129*/0, 1005 0, 1006 0, 1007 0, 1008 0, 1009 /*134*/0, 1010 0, 1011 0, 1012 0, 1013 0 1014 }; 1015 1016 /*MC 1017 MATELEMENTAL = "elemental" - A matrix type for dense matrices using the Elemental package 1018 1019 Options Database Keys: 1020 . -mat_type elemental - sets the matrix type to "elemental" during a call to MatSetFromOptions() 1021 1022 Level: beginner 1023 1024 .seealso: MATDENSE,MatCreateElemental() 1025 M*/ 1026 1027 #undef __FUNCT__ 1028 #define __FUNCT__ "MatCreate_Elemental" 1029 PETSC_EXTERN_C PetscErrorCode MatCreate_Elemental(Mat A) 1030 { 1031 Mat_Elemental *a; 1032 PetscErrorCode ierr; 1033 PetscBool flg,flg1,flg2; 1034 Mat_Elemental_Grid *commgrid; 1035 MPI_Comm icomm; 1036 PetscInt optv1,optv2; 1037 1038 PetscFunctionBegin; 1039 ierr = PetscElementalInitializePackage(PETSC_NULL);CHKERRQ(ierr); 1040 ierr = PetscMemcpy(A->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1041 A->insertmode = NOT_SET_VALUES; 1042 1043 ierr = PetscNewLog(A,Mat_Elemental,&a);CHKERRQ(ierr); 1044 A->data = (void*)a; 1045 1046 /* Set up the elemental matrix */ 1047 elem::mpi::Comm cxxcomm(((PetscObject)A)->comm); 1048 ierr = PetscOptionsBegin(((PetscObject)A)->comm,((PetscObject)A)->prefix,"Elemental Options","Mat");CHKERRQ(ierr); 1049 1050 /* Grid needs to be shared between multiple Mats on the same communicator, implement by attribute caching on the MPI_Comm */ 1051 if (Petsc_Elemental_keyval == MPI_KEYVAL_INVALID) { 1052 ierr = MPI_Keyval_create(MPI_NULL_COPY_FN,MPI_NULL_DELETE_FN,&Petsc_Elemental_keyval,(void*)0); 1053 } 1054 ierr = PetscCommDuplicate(cxxcomm,&icomm,PETSC_NULL);CHKERRQ(ierr); 1055 ierr = MPI_Attr_get(icomm,Petsc_Elemental_keyval,(void**)&commgrid,(int*)&flg);CHKERRQ(ierr); 1056 if (!flg) { 1057 ierr = PetscNewLog(A,Mat_Elemental_Grid,&commgrid);CHKERRQ(ierr); 1058 ierr = PetscOptionsInt("-mat_elemental_grid_height","Grid Height","None",elem::mpi::CommSize(cxxcomm),&optv1,&flg1);CHKERRQ(ierr); 1059 ierr = PetscOptionsInt("-mat_elemental_grid_width","Grid Width","None",1,&optv2,&flg2);CHKERRQ(ierr); 1060 if (flg1 || flg2) { 1061 if (optv1*optv2 != elem::mpi::CommSize(cxxcomm)) { 1062 SETERRQ(((PetscObject)A)->comm,PETSC_ERR_ARG_INCOMP,"Grid Height times Grid Width must equal CommSize"); 1063 } 1064 commgrid->grid = new elem::Grid(cxxcomm,optv1,optv2); /* use user-provided grid sizes */ 1065 } else { 1066 commgrid->grid = new elem::Grid(cxxcomm); /* use Elemental default grid sizes */ 1067 } 1068 commgrid->grid_refct = 1; 1069 ierr = MPI_Attr_put(icomm,Petsc_Elemental_keyval,(void*)commgrid);CHKERRQ(ierr); 1070 } else { 1071 commgrid->grid_refct++; 1072 } 1073 ierr = PetscCommDestroy(&icomm);CHKERRQ(ierr); 1074 a->grid = commgrid->grid; 1075 a->emat = new elem::DistMatrix<PetscElemScalar>(*a->grid); 1076 a->esubmat = new elem::Matrix<PetscElemScalar>(1,1); 1077 a->interface = new elem::AxpyInterface<PetscElemScalar>; 1078 a->pivot = new elem::DistMatrix<PetscInt,elem::VC,elem::STAR>; 1079 1080 /* build cache for off array entries formed */ 1081 a->interface->Attach(elem::LOCAL_TO_GLOBAL,*(a->emat)); 1082 1083 ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetOwnershipIS_C","MatGetOwnershipIS_Elemental",MatGetOwnershipIS_Elemental);CHKERRQ(ierr); 1084 ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetFactor_elemental_C","MatGetFactor_elemental_elemental",MatGetFactor_elemental_elemental);CHKERRQ(ierr); 1085 1086 ierr = PetscObjectChangeTypeName((PetscObject)A,MATELEMENTAL);CHKERRQ(ierr); 1087 PetscOptionsEnd(); 1088 PetscFunctionReturn(0); 1089 } 1090 1091