1 #include <../src/mat/impls/elemental/matelemimpl.h> /*I "petscmat.h" I*/ 2 3 /* 4 The variable Petsc_Elemental_keyval is used to indicate an MPI attribute that 5 is attached to a communicator, in this case the attribute is a Mat_Elemental_Grid 6 */ 7 static PetscMPIInt Petsc_Elemental_keyval = MPI_KEYVAL_INVALID; 8 9 #undef __FUNCT__ 10 #define __FUNCT__ "PetscElementalInitializePackage" 11 /*@C 12 PetscElementalInitializePackage - Initialize Elemental package 13 14 Logically Collective 15 16 Level: developer 17 18 .seealso: MATELEMENTAL, PetscElementalFinalizePackage() 19 @*/ 20 PetscErrorCode PetscElementalInitializePackage(void) 21 { 22 PetscErrorCode ierr; 23 24 PetscFunctionBegin; 25 if (elem::Initialized()) PetscFunctionReturn(0); 26 //#if defined(MV) 27 { /* We have already initialized MPI, so this song and dance is just to pass these variables (which won't be used by Elemental) through the interface that needs references */ 28 int zero = 0; 29 char **nothing = 0; 30 elem::Initialize(zero,nothing); 31 } 32 //#endif 33 ierr = PetscRegisterFinalize(PetscElementalFinalizePackage);CHKERRQ(ierr); 34 PetscFunctionReturn(0); 35 } 36 37 #undef __FUNCT__ 38 #define __FUNCT__ "PetscElementalFinalizePackage" 39 /*@C 40 PetscElementalFinalizePackage - Finalize Elemental package 41 42 Logically Collective 43 44 Level: developer 45 46 .seealso: MATELEMENTAL, PetscElementalInitializePackage() 47 @*/ 48 PetscErrorCode PetscElementalFinalizePackage(void) 49 { 50 51 PetscFunctionBegin; 52 elem::Finalize(); 53 PetscFunctionReturn(0); 54 } 55 56 #undef __FUNCT__ 57 #define __FUNCT__ "MatView_Elemental" 58 static PetscErrorCode MatView_Elemental(Mat A,PetscViewer viewer) 59 { 60 PetscErrorCode ierr; 61 Mat_Elemental *a = (Mat_Elemental*)A->data; 62 PetscBool iascii; 63 64 PetscFunctionBegin; 65 ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 66 if (iascii) { 67 PetscViewerFormat format; 68 ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 69 if (format == PETSC_VIEWER_ASCII_INFO) { 70 /* call elemental viewing function */ 71 ierr = PetscViewerASCIIPrintf(viewer,"Elemental run parameters:\n");CHKERRQ(ierr); 72 ierr = PetscViewerASCIIPrintf(viewer," allocated entries=%d\n",(*a->emat).AllocatedMemory());CHKERRQ(ierr); 73 ierr = PetscViewerASCIIPrintf(viewer," grid height=%d, grid width=%d\n",(*a->emat).Grid().Height(),(*a->emat).Grid().Width());CHKERRQ(ierr); 74 if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 75 /* call elemental viewing function */ 76 ierr = PetscPrintf(PetscObjectComm((PetscObject)viewer),"test matview_elemental 2\n");CHKERRQ(ierr); 77 } 78 79 } else if (format == PETSC_VIEWER_DEFAULT) { 80 ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 81 elem::Print( *a->emat, "Elemental matrix (cyclic ordering)" ); 82 ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 83 if (A->factortype == MAT_FACTOR_NONE){ 84 Mat Adense; 85 ierr = PetscPrintf(PetscObjectComm((PetscObject)viewer),"Elemental matrix (explicit ordering)\n");CHKERRQ(ierr); 86 ierr = MatConvert(A,MATDENSE,MAT_INITIAL_MATRIX,&Adense);CHKERRQ(ierr); 87 ierr = MatView(Adense,viewer);CHKERRQ(ierr); 88 ierr = MatDestroy(&Adense);CHKERRQ(ierr); 89 } 90 } else SETERRQ(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Format"); 91 } else { 92 /* convert to dense format and call MatView() */ 93 Mat Adense; 94 ierr = PetscPrintf(PetscObjectComm((PetscObject)viewer),"Elemental matrix (explicit ordering)\n");CHKERRQ(ierr); 95 ierr = MatConvert(A,MATDENSE,MAT_INITIAL_MATRIX,&Adense);CHKERRQ(ierr); 96 ierr = MatView(Adense,viewer);CHKERRQ(ierr); 97 ierr = MatDestroy(&Adense);CHKERRQ(ierr); 98 } 99 PetscFunctionReturn(0); 100 } 101 102 #undef __FUNCT__ 103 #define __FUNCT__ "MatGetInfo_Elemental" 104 static PetscErrorCode MatGetInfo_Elemental(Mat A,MatInfoType flag,MatInfo *info) 105 { 106 Mat_Elemental *a = (Mat_Elemental*)A->data; 107 PetscMPIInt rank; 108 109 PetscFunctionBegin; 110 MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank); 111 112 /* if (!rank) printf(" .........MatGetInfo_Elemental ...\n"); */ 113 info->block_size = 1.0; 114 115 if (flag == MAT_LOCAL) { 116 info->nz_allocated = (double)(*a->emat).AllocatedMemory(); /* locally allocated */ 117 info->nz_used = info->nz_allocated; 118 } else if (flag == MAT_GLOBAL_MAX) { 119 //ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 120 /* see MatGetInfo_MPIAIJ() for getting global info->nz_allocated! */ 121 //SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP," MAT_GLOBAL_MAX not written yet"); 122 } else if (flag == MAT_GLOBAL_SUM) { 123 //SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP," MAT_GLOBAL_SUM not written yet"); 124 info->nz_allocated = (double)(*a->emat).AllocatedMemory(); /* locally allocated */ 125 info->nz_used = info->nz_allocated; /* assume Elemental does accurate allocation */ 126 //ierr = MPI_Allreduce(isend,irecv,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 127 //PetscPrintf(PETSC_COMM_SELF," ... [%d] locally allocated %g\n",rank,info->nz_allocated); 128 } 129 130 info->nz_unneeded = 0.0; 131 info->assemblies = (double)A->num_ass; 132 info->mallocs = 0; 133 info->memory = ((PetscObject)A)->mem; 134 info->fill_ratio_given = 0; /* determined by Elemental */ 135 info->fill_ratio_needed = 0; 136 info->factor_mallocs = 0; 137 PetscFunctionReturn(0); 138 } 139 140 #undef __FUNCT__ 141 #define __FUNCT__ "MatSetValues_Elemental" 142 static PetscErrorCode MatSetValues_Elemental(Mat A,PetscInt nr,const PetscInt *rows,PetscInt nc,const PetscInt *cols,const PetscScalar *vals,InsertMode imode) 143 { 144 PetscErrorCode ierr; 145 Mat_Elemental *a = (Mat_Elemental*)A->data; 146 PetscMPIInt rank; 147 PetscInt i,j,rrank,ridx,crank,cidx; 148 149 PetscFunctionBegin; 150 ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr); 151 152 const elem::Grid &grid = a->emat->Grid(); 153 for (i=0; i<nr; i++) { 154 PetscInt erow,ecol,elrow,elcol; 155 if (rows[i] < 0) continue; 156 P2RO(A,0,rows[i],&rrank,&ridx); 157 RO2E(A,0,rrank,ridx,&erow); 158 if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Incorrect row translation"); 159 for (j=0; j<nc; j++) { 160 if (cols[j] < 0) continue; 161 P2RO(A,1,cols[j],&crank,&cidx); 162 RO2E(A,1,crank,cidx,&ecol); 163 if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Incorrect col translation"); 164 if (erow % grid.MCSize() != grid.MCRank() || ecol % grid.MRSize() != grid.MRRank()){ /* off-proc entry */ 165 if (imode != ADD_VALUES) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only ADD_VALUES to off-processor entry is supported"); 166 /* PetscPrintf(PETSC_COMM_SELF,"[%D] add off-proc entry (%D,%D, %g) (%D %D)\n",rank,rows[i],cols[j],*(vals+i*nc),erow,ecol); */ 167 a->esubmat->Set(0,0, (PetscElemScalar)vals[i*nc+j]); 168 a->interface->Axpy(1.0,*(a->esubmat),erow,ecol); 169 continue; 170 } 171 elrow = erow / grid.MCSize(); 172 elcol = ecol / grid.MRSize(); 173 switch (imode) { 174 case INSERT_VALUES: a->emat->SetLocal(elrow,elcol,(PetscElemScalar)vals[i*nc+j]); break; 175 case ADD_VALUES: a->emat->UpdateLocal(elrow,elcol,(PetscElemScalar)vals[i*nc+j]); break; 176 default: SETERRQ1(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for InsertMode %d",(int)imode); 177 } 178 } 179 } 180 PetscFunctionReturn(0); 181 } 182 183 #undef __FUNCT__ 184 #define __FUNCT__ "MatMult_Elemental" 185 static PetscErrorCode MatMult_Elemental(Mat A,Vec X,Vec Y) 186 { 187 Mat_Elemental *a = (Mat_Elemental*)A->data; 188 PetscErrorCode ierr; 189 const PetscElemScalar *x; 190 PetscElemScalar *y; 191 PetscElemScalar one = 1,zero = 0; 192 193 PetscFunctionBegin; 194 ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 195 ierr = VecGetArray(Y,(PetscScalar **)&y);CHKERRQ(ierr); 196 { /* Scoping so that constructor is called before pointer is returned */ 197 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe, ye; 198 xe.LockedAttach(A->cmap->N,1,*a->grid,0,0,x,A->cmap->n); 199 ye.Attach(A->rmap->N,1,*a->grid,0,0,y,A->rmap->n); 200 elem::Gemv(elem::NORMAL,one,*a->emat,xe,zero,ye); 201 } 202 ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 203 ierr = VecRestoreArray(Y,(PetscScalar **)&y);CHKERRQ(ierr); 204 PetscFunctionReturn(0); 205 } 206 207 #undef __FUNCT__ 208 #define __FUNCT__ "MatMultTranspose_Elemental" 209 static PetscErrorCode MatMultTranspose_Elemental(Mat A,Vec X,Vec Y) 210 { 211 Mat_Elemental *a = (Mat_Elemental*)A->data; 212 PetscErrorCode ierr; 213 const PetscElemScalar *x; 214 PetscElemScalar *y; 215 PetscElemScalar one = 1,zero = 0; 216 217 PetscFunctionBegin; 218 ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 219 ierr = VecGetArray(Y,(PetscScalar **)&y);CHKERRQ(ierr); 220 { /* Scoping so that constructor is called before pointer is returned */ 221 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe, ye; 222 xe.LockedAttach(A->rmap->N,1,*a->grid,0,0,x,A->rmap->n); 223 ye.Attach(A->cmap->N,1,*a->grid,0,0,y,A->cmap->n); 224 elem::Gemv(elem::TRANSPOSE,one,*a->emat,xe,zero,ye); 225 } 226 ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 227 ierr = VecRestoreArray(Y,(PetscScalar **)&y);CHKERRQ(ierr); 228 PetscFunctionReturn(0); 229 } 230 231 #undef __FUNCT__ 232 #define __FUNCT__ "MatMultAdd_Elemental" 233 static PetscErrorCode MatMultAdd_Elemental(Mat A,Vec X,Vec Y,Vec Z) 234 { 235 Mat_Elemental *a = (Mat_Elemental*)A->data; 236 PetscErrorCode ierr; 237 const PetscElemScalar *x; 238 PetscElemScalar *z; 239 PetscElemScalar one = 1; 240 241 PetscFunctionBegin; 242 if (Y != Z) {ierr = VecCopy(Y,Z);CHKERRQ(ierr);} 243 ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 244 ierr = VecGetArray(Z,(PetscScalar **)&z);CHKERRQ(ierr); 245 { /* Scoping so that constructor is called before pointer is returned */ 246 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe, ze; 247 xe.LockedAttach(A->cmap->N,1,*a->grid,0,0,x,A->cmap->n); 248 ze.Attach(A->rmap->N,1,*a->grid,0,0,z,A->rmap->n); 249 elem::Gemv(elem::NORMAL,one,*a->emat,xe,one,ze); 250 } 251 ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 252 ierr = VecRestoreArray(Z,(PetscScalar **)&z);CHKERRQ(ierr); 253 PetscFunctionReturn(0); 254 } 255 256 #undef __FUNCT__ 257 #define __FUNCT__ "MatMultTransposeAdd_Elemental" 258 static PetscErrorCode MatMultTransposeAdd_Elemental(Mat A,Vec X,Vec Y,Vec Z) 259 { 260 Mat_Elemental *a = (Mat_Elemental*)A->data; 261 PetscErrorCode ierr; 262 const PetscElemScalar *x; 263 PetscElemScalar *z; 264 PetscElemScalar one = 1; 265 266 PetscFunctionBegin; 267 if (Y != Z) {ierr = VecCopy(Y,Z);CHKERRQ(ierr);} 268 ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 269 ierr = VecGetArray(Z,(PetscScalar **)&z);CHKERRQ(ierr); 270 { /* Scoping so that constructor is called before pointer is returned */ 271 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe, ze; 272 xe.LockedAttach(A->rmap->N,1,*a->grid,0,0,x,A->rmap->n); 273 ze.Attach(A->cmap->N,1,*a->grid,0,0,z,A->cmap->n); 274 elem::Gemv(elem::TRANSPOSE,one,*a->emat,xe,one,ze); 275 } 276 ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 277 ierr = VecRestoreArray(Z,(PetscScalar **)&z);CHKERRQ(ierr); 278 PetscFunctionReturn(0); 279 } 280 281 #undef __FUNCT__ 282 #define __FUNCT__ "MatMatMultNumeric_Elemental" 283 static PetscErrorCode MatMatMultNumeric_Elemental(Mat A,Mat B,Mat C) 284 { 285 Mat_Elemental *a = (Mat_Elemental*)A->data; 286 Mat_Elemental *b = (Mat_Elemental*)B->data; 287 Mat_Elemental *c = (Mat_Elemental*)C->data; 288 PetscElemScalar one = 1,zero = 0; 289 290 PetscFunctionBegin; 291 { /* Scoping so that constructor is called before pointer is returned */ 292 elem::Gemm(elem::NORMAL,elem::NORMAL,one,*a->emat,*b->emat,zero,*c->emat); 293 } 294 C->assembled = PETSC_TRUE; 295 PetscFunctionReturn(0); 296 } 297 298 #undef __FUNCT__ 299 #define __FUNCT__ "MatMatMultSymbolic_Elemental" 300 static PetscErrorCode MatMatMultSymbolic_Elemental(Mat A,Mat B,PetscReal fill,Mat *C) 301 { 302 PetscErrorCode ierr; 303 Mat Ce; 304 MPI_Comm comm; 305 306 PetscFunctionBegin; 307 ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 308 ierr = MatCreate(comm,&Ce);CHKERRQ(ierr); 309 ierr = MatSetSizes(Ce,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 310 ierr = MatSetType(Ce,MATELEMENTAL);CHKERRQ(ierr); 311 ierr = MatSetUp(Ce);CHKERRQ(ierr); 312 *C = Ce; 313 PetscFunctionReturn(0); 314 } 315 316 #undef __FUNCT__ 317 #define __FUNCT__ "MatMatMult_Elemental" 318 static PetscErrorCode MatMatMult_Elemental(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 319 { 320 PetscErrorCode ierr; 321 322 PetscFunctionBegin; 323 if (scall == MAT_INITIAL_MATRIX){ 324 ierr = PetscLogEventBegin(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 325 ierr = MatMatMultSymbolic_Elemental(A,B,1.0,C);CHKERRQ(ierr); 326 ierr = PetscLogEventEnd(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 327 } 328 ierr = PetscLogEventBegin(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 329 ierr = MatMatMultNumeric_Elemental(A,B,*C);CHKERRQ(ierr); 330 ierr = PetscLogEventEnd(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 331 PetscFunctionReturn(0); 332 } 333 334 #undef __FUNCT__ 335 #define __FUNCT__ "MatMatTransposeMultNumeric_Elemental" 336 static PetscErrorCode MatMatTransposeMultNumeric_Elemental(Mat A,Mat B,Mat C) 337 { 338 Mat_Elemental *a = (Mat_Elemental*)A->data; 339 Mat_Elemental *b = (Mat_Elemental*)B->data; 340 Mat_Elemental *c = (Mat_Elemental*)C->data; 341 PetscElemScalar one = 1,zero = 0; 342 343 PetscFunctionBegin; 344 { /* Scoping so that constructor is called before pointer is returned */ 345 elem::Gemm(elem::NORMAL,elem::TRANSPOSE,one,*a->emat,*b->emat,zero,*c->emat); 346 } 347 C->assembled = PETSC_TRUE; 348 PetscFunctionReturn(0); 349 } 350 351 #undef __FUNCT__ 352 #define __FUNCT__ "MatMatTransposeMultSymbolic_Elemental" 353 static PetscErrorCode MatMatTransposeMultSymbolic_Elemental(Mat A,Mat B,PetscReal fill,Mat *C) 354 { 355 PetscErrorCode ierr; 356 Mat Ce; 357 MPI_Comm comm; 358 359 PetscFunctionBegin; 360 ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 361 ierr = MatCreate(comm,&Ce);CHKERRQ(ierr); 362 ierr = MatSetSizes(Ce,A->rmap->n,B->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 363 ierr = MatSetType(Ce,MATELEMENTAL);CHKERRQ(ierr); 364 ierr = MatSetUp(Ce);CHKERRQ(ierr); 365 *C = Ce; 366 PetscFunctionReturn(0); 367 } 368 369 #undef __FUNCT__ 370 #define __FUNCT__ "MatMatTransposeMult_Elemental" 371 static PetscErrorCode MatMatTransposeMult_Elemental(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 372 { 373 PetscErrorCode ierr; 374 375 PetscFunctionBegin; 376 if (scall == MAT_INITIAL_MATRIX){ 377 ierr = PetscLogEventBegin(MAT_MatTransposeMultSymbolic,A,B,0,0);CHKERRQ(ierr); 378 ierr = MatMatMultSymbolic_Elemental(A,B,1.0,C);CHKERRQ(ierr); 379 ierr = PetscLogEventEnd(MAT_MatTransposeMultSymbolic,A,B,0,0);CHKERRQ(ierr); 380 } 381 ierr = PetscLogEventBegin(MAT_MatTransposeMultNumeric,A,B,0,0);CHKERRQ(ierr); 382 ierr = MatMatTransposeMultNumeric_Elemental(A,B,*C);CHKERRQ(ierr); 383 ierr = PetscLogEventEnd(MAT_MatTransposeMultNumeric,A,B,0,0);CHKERRQ(ierr); 384 PetscFunctionReturn(0); 385 } 386 387 #undef __FUNCT__ 388 #define __FUNCT__ "MatGetDiagonal_Elemental" 389 static PetscErrorCode MatGetDiagonal_Elemental(Mat A,Vec D) 390 { 391 PetscInt i,nrows,ncols,nD,rrank,ridx,crank,cidx; 392 Mat_Elemental *a = (Mat_Elemental*)A->data; 393 PetscErrorCode ierr; 394 PetscElemScalar v; 395 MPI_Comm comm; 396 397 PetscFunctionBegin; 398 ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 399 ierr = MatGetSize(A,&nrows,&ncols);CHKERRQ(ierr); 400 nD = nrows>ncols ? ncols : nrows; 401 for (i=0; i<nD; i++) { 402 PetscInt erow,ecol; 403 P2RO(A,0,i,&rrank,&ridx); 404 RO2E(A,0,rrank,ridx,&erow); 405 if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect row translation"); 406 P2RO(A,1,i,&crank,&cidx); 407 RO2E(A,1,crank,cidx,&ecol); 408 if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect col translation"); 409 v = a->emat->Get(erow,ecol); 410 ierr = VecSetValues(D,1,&i,(PetscScalar*)&v,INSERT_VALUES);CHKERRQ(ierr); 411 } 412 ierr = VecAssemblyBegin(D);CHKERRQ(ierr); 413 ierr = VecAssemblyEnd(D);CHKERRQ(ierr); 414 PetscFunctionReturn(0); 415 } 416 417 #undef __FUNCT__ 418 #define __FUNCT__ "MatDiagonalScale_Elemental" 419 static PetscErrorCode MatDiagonalScale_Elemental(Mat X,Vec L,Vec R) 420 { 421 Mat_Elemental *x = (Mat_Elemental*)X->data; 422 const PetscElemScalar *d; 423 PetscErrorCode ierr; 424 425 PetscFunctionBegin; 426 if (R) { 427 ierr = VecGetArrayRead(R,(const PetscScalar **)&d);CHKERRQ(ierr); 428 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> de; 429 de.LockedAttach(X->cmap->N,1,*x->grid,0,0,d,X->cmap->n); 430 elem::DiagonalScale(elem::RIGHT,elem::NORMAL,de,*x->emat); 431 ierr = VecRestoreArrayRead(R,(const PetscScalar **)&d);CHKERRQ(ierr); 432 } 433 if (L) { 434 ierr = VecGetArrayRead(L,(const PetscScalar **)&d);CHKERRQ(ierr); 435 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> de; 436 de.LockedAttach(X->rmap->N,1,*x->grid,0,0,d,X->rmap->n); 437 elem::DiagonalScale(elem::LEFT,elem::NORMAL,de,*x->emat); 438 ierr = VecRestoreArrayRead(L,(const PetscScalar **)&d);CHKERRQ(ierr); 439 } 440 PetscFunctionReturn(0); 441 } 442 443 #undef __FUNCT__ 444 #define __FUNCT__ "MatScale_Elemental" 445 static PetscErrorCode MatScale_Elemental(Mat X,PetscScalar a) 446 { 447 Mat_Elemental *x = (Mat_Elemental*)X->data; 448 449 PetscFunctionBegin; 450 elem::Scale((PetscElemScalar)a,*x->emat); 451 PetscFunctionReturn(0); 452 } 453 454 /* 455 MatAXPY - Computes Y = a*X + Y. 456 */ 457 #undef __FUNCT__ 458 #define __FUNCT__ "MatAXPY_Elemental" 459 static PetscErrorCode MatAXPY_Elemental(Mat Y,PetscScalar a,Mat X,MatStructure str) 460 { 461 Mat_Elemental *x = (Mat_Elemental*)X->data; 462 Mat_Elemental *y = (Mat_Elemental*)Y->data; 463 PetscErrorCode ierr; 464 465 PetscFunctionBegin; 466 elem::Axpy((PetscElemScalar)a,*x->emat,*y->emat); 467 ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 468 PetscFunctionReturn(0); 469 } 470 471 #undef __FUNCT__ 472 #define __FUNCT__ "MatCopy_Elemental" 473 static PetscErrorCode MatCopy_Elemental(Mat A,Mat B,MatStructure str) 474 { 475 Mat_Elemental *a=(Mat_Elemental*)A->data; 476 Mat_Elemental *b=(Mat_Elemental*)B->data; 477 478 PetscFunctionBegin; 479 elem::Copy(*a->emat,*b->emat); 480 PetscFunctionReturn(0); 481 } 482 483 #undef __FUNCT__ 484 #define __FUNCT__ "MatDuplicate_Elemental" 485 static PetscErrorCode MatDuplicate_Elemental(Mat A,MatDuplicateOption op,Mat *B) 486 { 487 Mat Be; 488 MPI_Comm comm; 489 Mat_Elemental *a=(Mat_Elemental*)A->data; 490 PetscErrorCode ierr; 491 492 PetscFunctionBegin; 493 ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 494 ierr = MatCreate(comm,&Be);CHKERRQ(ierr); 495 ierr = MatSetSizes(Be,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 496 ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr); 497 ierr = MatSetUp(Be);CHKERRQ(ierr); 498 *B = Be; 499 if (op == MAT_COPY_VALUES) { 500 Mat_Elemental *b=(Mat_Elemental*)Be->data; 501 elem::Copy(*a->emat,*b->emat); 502 } 503 Be->assembled = PETSC_TRUE; 504 PetscFunctionReturn(0); 505 } 506 507 #undef __FUNCT__ 508 #define __FUNCT__ "MatTranspose_Elemental" 509 static PetscErrorCode MatTranspose_Elemental(Mat A,MatReuse reuse,Mat *B) 510 { 511 Mat Be = *B; 512 PetscErrorCode ierr; 513 MPI_Comm comm; 514 Mat_Elemental *a = (Mat_Elemental*)A->data, *b; 515 516 PetscFunctionBegin; 517 ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 518 /* Only out-of-place supported */ 519 if (reuse == MAT_INITIAL_MATRIX){ 520 ierr = MatCreate(comm,&Be);CHKERRQ(ierr); 521 ierr = MatSetSizes(Be,A->cmap->n,A->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 522 ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr); 523 ierr = MatSetUp(Be);CHKERRQ(ierr); 524 *B = Be; 525 } 526 b = (Mat_Elemental*)Be->data; 527 elem::Transpose(*a->emat,*b->emat); 528 Be->assembled = PETSC_TRUE; 529 PetscFunctionReturn(0); 530 } 531 532 #undef __FUNCT__ 533 #define __FUNCT__ "MatConjugate_Elemental" 534 static PetscErrorCode MatConjugate_Elemental(Mat A) 535 { 536 Mat_Elemental *a = (Mat_Elemental*)A->data; 537 538 PetscFunctionBegin; 539 elem::Conjugate(*a->emat); 540 PetscFunctionReturn(0); 541 } 542 543 #undef __FUNCT__ 544 #define __FUNCT__ "MatHermitianTranspose_Elemental" 545 static PetscErrorCode MatHermitianTranspose_Elemental(Mat A,MatReuse reuse,Mat *B) 546 { 547 Mat Be = *B; 548 PetscErrorCode ierr; 549 MPI_Comm comm; 550 Mat_Elemental *a = (Mat_Elemental*)A->data, *b; 551 552 PetscFunctionBegin; 553 ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 554 /* Only out-of-place supported */ 555 if (reuse == MAT_INITIAL_MATRIX){ 556 ierr = MatCreate(comm,&Be);CHKERRQ(ierr); 557 ierr = MatSetSizes(Be,A->cmap->n,A->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 558 ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr); 559 ierr = MatSetUp(Be);CHKERRQ(ierr); 560 *B = Be; 561 } 562 b = (Mat_Elemental*)Be->data; 563 elem::Adjoint(*a->emat,*b->emat); 564 Be->assembled = PETSC_TRUE; 565 PetscFunctionReturn(0); 566 } 567 568 #undef __FUNCT__ 569 #define __FUNCT__ "MatSolve_Elemental" 570 static PetscErrorCode MatSolve_Elemental(Mat A,Vec B,Vec X) 571 { 572 Mat_Elemental *a = (Mat_Elemental*)A->data; 573 PetscErrorCode ierr; 574 PetscElemScalar *x; 575 576 PetscFunctionBegin; 577 ierr = VecCopy(B,X);CHKERRQ(ierr); 578 ierr = VecGetArray(X,(PetscScalar **)&x);CHKERRQ(ierr); 579 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe; 580 xe.Attach(A->rmap->N,1,*a->grid,0,0,x,A->rmap->n); 581 elem::DistMatrix<PetscElemScalar,elem::MC,elem::MR> xer(xe); 582 switch (A->factortype) { 583 case MAT_FACTOR_LU: 584 if ((*a->pivot).AllocatedMemory()) { 585 elem::lu::SolveAfter(elem::NORMAL,*a->emat,*a->pivot,xer); 586 elem::Copy(xer,xe); 587 } else { 588 elem::lu::SolveAfter(elem::NORMAL,*a->emat,xer); 589 elem::Copy(xer,xe); 590 } 591 break; 592 case MAT_FACTOR_CHOLESKY: 593 elem::cholesky::SolveAfter(elem::UPPER,elem::NORMAL,*a->emat,xer); 594 elem::Copy(xer,xe); 595 break; 596 default: 597 SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unfactored Matrix or Unsupported MatFactorType"); 598 break; 599 } 600 ierr = VecRestoreArray(X,(PetscScalar **)&x);CHKERRQ(ierr); 601 PetscFunctionReturn(0); 602 } 603 604 #undef __FUNCT__ 605 #define __FUNCT__ "MatSolveAdd_Elemental" 606 static PetscErrorCode MatSolveAdd_Elemental(Mat A,Vec B,Vec Y,Vec X) 607 { 608 PetscErrorCode ierr; 609 610 PetscFunctionBegin; 611 ierr = MatSolve_Elemental(A,B,X);CHKERRQ(ierr); 612 ierr = VecAXPY(X,1,Y);CHKERRQ(ierr); 613 PetscFunctionReturn(0); 614 } 615 616 #undef __FUNCT__ 617 #define __FUNCT__ "MatMatSolve_Elemental" 618 static PetscErrorCode MatMatSolve_Elemental(Mat A,Mat B,Mat X) 619 { 620 Mat_Elemental *a=(Mat_Elemental*)A->data; 621 Mat_Elemental *b=(Mat_Elemental*)B->data; 622 Mat_Elemental *x=(Mat_Elemental*)X->data; 623 624 PetscFunctionBegin; 625 elem::Copy(*b->emat,*x->emat); 626 switch (A->factortype) { 627 case MAT_FACTOR_LU: 628 if ((*a->pivot).AllocatedMemory()) { 629 elem::lu::SolveAfter(elem::NORMAL,*a->emat,*a->pivot,*x->emat); 630 } else { 631 elem::lu::SolveAfter(elem::NORMAL,*a->emat,*x->emat); 632 } 633 break; 634 case MAT_FACTOR_CHOLESKY: 635 elem::cholesky::SolveAfter(elem::UPPER,elem::NORMAL,*a->emat,*x->emat); 636 break; 637 default: 638 SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unfactored Matrix or Unsupported MatFactorType"); 639 break; 640 } 641 PetscFunctionReturn(0); 642 } 643 644 #undef __FUNCT__ 645 #define __FUNCT__ "MatLUFactor_Elemental" 646 static PetscErrorCode MatLUFactor_Elemental(Mat A,IS row,IS col,const MatFactorInfo *info) 647 { 648 Mat_Elemental *a = (Mat_Elemental*)A->data; 649 650 PetscFunctionBegin; 651 if (info->dtcol){ 652 elem::LU(*a->emat,*a->pivot); 653 } else { 654 elem::LU(*a->emat); 655 } 656 A->factortype = MAT_FACTOR_LU; 657 A->assembled = PETSC_TRUE; 658 PetscFunctionReturn(0); 659 } 660 661 #undef __FUNCT__ 662 #define __FUNCT__ "MatLUFactorNumeric_Elemental" 663 static PetscErrorCode MatLUFactorNumeric_Elemental(Mat F,Mat A,const MatFactorInfo *info) 664 { 665 PetscErrorCode ierr; 666 667 PetscFunctionBegin; 668 ierr = MatCopy(A,F,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 669 ierr = MatLUFactor_Elemental(F,0,0,info);CHKERRQ(ierr); 670 PetscFunctionReturn(0); 671 } 672 673 #undef __FUNCT__ 674 #define __FUNCT__ "MatLUFactorSymbolic_Elemental" 675 static PetscErrorCode MatLUFactorSymbolic_Elemental(Mat F,Mat A,IS r,IS c,const MatFactorInfo *info) 676 { 677 PetscFunctionBegin; 678 /* F is create and allocated by MatGetFactor_elemental_petsc(), skip this routine. */ 679 PetscFunctionReturn(0); 680 } 681 682 #undef __FUNCT__ 683 #define __FUNCT__ "MatCholeskyFactor_Elemental" 684 static PetscErrorCode MatCholeskyFactor_Elemental(Mat A,IS perm,const MatFactorInfo *info) 685 { 686 Mat_Elemental *a = (Mat_Elemental*)A->data; 687 elem::DistMatrix<PetscElemScalar,elem::MC,elem::STAR> d; 688 689 PetscFunctionBegin; 690 elem::Cholesky(elem::UPPER,*a->emat); 691 A->factortype = MAT_FACTOR_CHOLESKY; 692 A->assembled = PETSC_TRUE; 693 PetscFunctionReturn(0); 694 } 695 696 #undef __FUNCT__ 697 #define __FUNCT__ "MatCholeskyFactorNumeric_Elemental" 698 static PetscErrorCode MatCholeskyFactorNumeric_Elemental(Mat F,Mat A,const MatFactorInfo *info) 699 { 700 PetscErrorCode ierr; 701 702 PetscFunctionBegin; 703 ierr = MatCopy(A,F,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 704 ierr = MatCholeskyFactor_Elemental(F,0,info);CHKERRQ(ierr); 705 PetscFunctionReturn(0); 706 } 707 708 #undef __FUNCT__ 709 #define __FUNCT__ "MatCholeskyFactorSymbolic_Elemental" 710 static PetscErrorCode MatCholeskyFactorSymbolic_Elemental(Mat F,Mat A,IS perm,const MatFactorInfo *info) 711 { 712 PetscFunctionBegin; 713 /* F is create and allocated by MatGetFactor_elemental_petsc(), skip this routine. */ 714 PetscFunctionReturn(0); 715 } 716 717 #undef __FUNCT__ 718 #define __FUNCT__ "MatFactorGetSolverPackage_elemental_elemental" 719 PetscErrorCode MatFactorGetSolverPackage_elemental_elemental(Mat A,const MatSolverPackage *type) 720 { 721 PetscFunctionBegin; 722 *type = MATSOLVERELEMENTAL; 723 PetscFunctionReturn(0); 724 } 725 726 #undef __FUNCT__ 727 #define __FUNCT__ "MatGetFactor_elemental_elemental" 728 static PetscErrorCode MatGetFactor_elemental_elemental(Mat A,MatFactorType ftype,Mat *F) 729 { 730 Mat B; 731 PetscErrorCode ierr; 732 733 PetscFunctionBegin; 734 /* Create the factorization matrix */ 735 ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 736 ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 737 ierr = MatSetType(B,MATELEMENTAL);CHKERRQ(ierr); 738 ierr = MatSetUp(B);CHKERRQ(ierr); 739 B->factortype = ftype; 740 ierr = PetscObjectComposeFunction((PetscObject)B,"MatFactorGetSolverPackage_C",MatFactorGetSolverPackage_elemental_elemental);CHKERRQ(ierr); 741 *F = B; 742 PetscFunctionReturn(0); 743 } 744 745 #undef __FUNCT__ 746 #define __FUNCT__ "MatSolverPackageRegister_Elemental" 747 PETSC_EXTERN PetscErrorCode MatSolverPackageRegister_Elemental(void) 748 { 749 PetscErrorCode ierr; 750 751 PetscFunctionBegin; 752 ierr = MatSolverPackageRegister(MATSOLVERELEMENTAL,MATELEMENTAL, MAT_FACTOR_LU,MatGetFactor_elemental_elemental);CHKERRQ(ierr); 753 ierr = MatSolverPackageRegister(MATSOLVERELEMENTAL,MATELEMENTAL, MAT_FACTOR_CHOLESKY,MatGetFactor_elemental_elemental);CHKERRQ(ierr); 754 PetscFunctionReturn(0); 755 } 756 757 #undef __FUNCT__ 758 #define __FUNCT__ "MatNorm_Elemental" 759 static PetscErrorCode MatNorm_Elemental(Mat A,NormType type,PetscReal *nrm) 760 { 761 Mat_Elemental *a=(Mat_Elemental*)A->data; 762 763 PetscFunctionBegin; 764 switch (type){ 765 case NORM_1: 766 *nrm = elem::OneNorm(*a->emat); 767 break; 768 case NORM_FROBENIUS: 769 *nrm = elem::FrobeniusNorm(*a->emat); 770 break; 771 case NORM_INFINITY: 772 *nrm = elem::InfinityNorm(*a->emat); 773 break; 774 default: 775 printf("Error: unsupported norm type!\n"); 776 } 777 PetscFunctionReturn(0); 778 } 779 780 #undef __FUNCT__ 781 #define __FUNCT__ "MatZeroEntries_Elemental" 782 static PetscErrorCode MatZeroEntries_Elemental(Mat A) 783 { 784 Mat_Elemental *a=(Mat_Elemental*)A->data; 785 786 PetscFunctionBegin; 787 elem::Zero(*a->emat); 788 PetscFunctionReturn(0); 789 } 790 791 #undef __FUNCT__ 792 #define __FUNCT__ "MatGetOwnershipIS_Elemental" 793 static PetscErrorCode MatGetOwnershipIS_Elemental(Mat A,IS *rows,IS *cols) 794 { 795 Mat_Elemental *a = (Mat_Elemental*)A->data; 796 PetscErrorCode ierr; 797 PetscInt i,m,shift,stride,*idx; 798 799 PetscFunctionBegin; 800 if (rows) { 801 m = a->emat->LocalHeight(); 802 shift = a->emat->ColShift(); 803 stride = a->emat->ColStride(); 804 ierr = PetscMalloc1(m,&idx);CHKERRQ(ierr); 805 for (i=0; i<m; i++) { 806 PetscInt rank,offset; 807 E2RO(A,0,shift+i*stride,&rank,&offset); 808 RO2P(A,0,rank,offset,&idx[i]); 809 } 810 ierr = ISCreateGeneral(PETSC_COMM_SELF,m,idx,PETSC_OWN_POINTER,rows);CHKERRQ(ierr); 811 } 812 if (cols) { 813 m = a->emat->LocalWidth(); 814 shift = a->emat->RowShift(); 815 stride = a->emat->RowStride(); 816 ierr = PetscMalloc1(m,&idx);CHKERRQ(ierr); 817 for (i=0; i<m; i++) { 818 PetscInt rank,offset; 819 E2RO(A,1,shift+i*stride,&rank,&offset); 820 RO2P(A,1,rank,offset,&idx[i]); 821 } 822 ierr = ISCreateGeneral(PETSC_COMM_SELF,m,idx,PETSC_OWN_POINTER,cols);CHKERRQ(ierr); 823 } 824 PetscFunctionReturn(0); 825 } 826 827 #undef __FUNCT__ 828 #define __FUNCT__ "MatConvert_Elemental_Dense" 829 static PetscErrorCode MatConvert_Elemental_Dense(Mat A,MatType newtype,MatReuse reuse,Mat *B) 830 { 831 Mat Bmpi; 832 Mat_Elemental *a = (Mat_Elemental*)A->data; 833 MPI_Comm comm; 834 PetscErrorCode ierr; 835 PetscInt rrank,ridx,crank,cidx,nrows,ncols,i,j; 836 PetscElemScalar v; 837 PetscBool s1,s2,s3; 838 839 PetscFunctionBegin; 840 ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 841 ierr = PetscStrcmp(newtype,MATDENSE,&s1);CHKERRQ(ierr); 842 ierr = PetscStrcmp(newtype,MATSEQDENSE,&s2);CHKERRQ(ierr); 843 ierr = PetscStrcmp(newtype,MATMPIDENSE,&s3);CHKERRQ(ierr); 844 if (!s1 && !s2 && !s3) SETERRQ(comm,PETSC_ERR_SUP,"Unsupported New MatType: must be MATDENSE, MATSEQDENSE or MATMPIDENSE"); 845 ierr = MatCreate(comm,&Bmpi);CHKERRQ(ierr); 846 ierr = MatSetSizes(Bmpi,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 847 ierr = MatSetType(Bmpi,MATDENSE);CHKERRQ(ierr); 848 ierr = MatSetUp(Bmpi);CHKERRQ(ierr); 849 ierr = MatGetSize(A,&nrows,&ncols);CHKERRQ(ierr); 850 for (i=0; i<nrows; i++) { 851 PetscInt erow,ecol; 852 P2RO(A,0,i,&rrank,&ridx); 853 RO2E(A,0,rrank,ridx,&erow); 854 if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect row translation"); 855 for (j=0; j<ncols; j++) { 856 P2RO(A,1,j,&crank,&cidx); 857 RO2E(A,1,crank,cidx,&ecol); 858 if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect col translation"); 859 v = a->emat->Get(erow,ecol); 860 ierr = MatSetValues(Bmpi,1,&i,1,&j,(PetscScalar *)&v,INSERT_VALUES);CHKERRQ(ierr); 861 } 862 } 863 ierr = MatAssemblyBegin(Bmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 864 ierr = MatAssemblyEnd(Bmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 865 if (reuse == MAT_REUSE_MATRIX) { 866 ierr = MatHeaderReplace(A,Bmpi);CHKERRQ(ierr); 867 } else { 868 *B = Bmpi; 869 } 870 PetscFunctionReturn(0); 871 } 872 873 #undef __FUNCT__ 874 #define __FUNCT__ "MatConvert_SeqAIJ_Elemental" 875 PETSC_EXTERN PetscErrorCode MatConvert_SeqAIJ_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 876 { 877 Mat mat_elemental; 878 PetscErrorCode ierr; 879 PetscInt M=A->rmap->N,N=A->cmap->N,row,ncols; 880 const PetscInt *cols; 881 const PetscScalar *vals; 882 883 PetscFunctionBegin; 884 ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr); 885 ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,M,N);CHKERRQ(ierr); 886 ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr); 887 ierr = MatSetUp(mat_elemental);CHKERRQ(ierr); 888 for (row=0; row<M; row++) { 889 ierr = MatGetRow(A,row,&ncols,&cols,&vals);CHKERRQ(ierr); 890 /* PETSc-Elemental interaface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 891 ierr = MatSetValues(mat_elemental,1,&row,ncols,cols,vals,ADD_VALUES);CHKERRQ(ierr); 892 ierr = MatRestoreRow(A,row,&ncols,&cols,&vals);CHKERRQ(ierr); 893 } 894 ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 895 ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 896 897 if (reuse == MAT_REUSE_MATRIX) { 898 ierr = MatHeaderReplace(A,mat_elemental);CHKERRQ(ierr); 899 } else { 900 *newmat = mat_elemental; 901 } 902 PetscFunctionReturn(0); 903 } 904 905 #undef __FUNCT__ 906 #define __FUNCT__ "MatConvert_MPIAIJ_Elemental" 907 PETSC_EXTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 908 { 909 Mat mat_elemental; 910 PetscErrorCode ierr; 911 PetscInt row,ncols,rstart=A->rmap->rstart,rend=A->rmap->rend,j; 912 const PetscInt *cols; 913 const PetscScalar *vals; 914 915 PetscFunctionBegin; 916 ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr); 917 ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 918 ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr); 919 ierr = MatSetUp(mat_elemental);CHKERRQ(ierr); 920 for (row=rstart; row<rend; row++) { 921 ierr = MatGetRow(A,row,&ncols,&cols,&vals);CHKERRQ(ierr); 922 for (j=0; j<ncols; j++) { 923 /* PETSc-Elemental interaface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 924 ierr = MatSetValues(mat_elemental,1,&row,1,&cols[j],&vals[j],ADD_VALUES);CHKERRQ(ierr); 925 } 926 ierr = MatRestoreRow(A,row,&ncols,&cols,&vals);CHKERRQ(ierr); 927 } 928 ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 929 ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 930 931 if (reuse == MAT_REUSE_MATRIX) { 932 ierr = MatHeaderReplace(A,mat_elemental);CHKERRQ(ierr); 933 } else { 934 *newmat = mat_elemental; 935 } 936 PetscFunctionReturn(0); 937 } 938 939 #undef __FUNCT__ 940 #define __FUNCT__ "MatDestroy_Elemental" 941 static PetscErrorCode MatDestroy_Elemental(Mat A) 942 { 943 Mat_Elemental *a = (Mat_Elemental*)A->data; 944 PetscErrorCode ierr; 945 Mat_Elemental_Grid *commgrid; 946 PetscBool flg; 947 MPI_Comm icomm; 948 949 PetscFunctionBegin; 950 a->interface->Detach(); 951 delete a->interface; 952 delete a->esubmat; 953 delete a->emat; 954 955 elem::mpi::Comm cxxcomm(PetscObjectComm((PetscObject)A)); 956 ierr = PetscCommDuplicate(cxxcomm.comm,&icomm,NULL);CHKERRQ(ierr); 957 ierr = MPI_Attr_get(icomm,Petsc_Elemental_keyval,(void**)&commgrid,(int*)&flg);CHKERRQ(ierr); 958 if (--commgrid->grid_refct == 0) { 959 delete commgrid->grid; 960 ierr = PetscFree(commgrid);CHKERRQ(ierr); 961 } 962 ierr = PetscCommDestroy(&icomm);CHKERRQ(ierr); 963 ierr = PetscObjectComposeFunction((PetscObject)A,"MatGetOwnershipIS_C",NULL);CHKERRQ(ierr); 964 ierr = PetscObjectComposeFunction((PetscObject)A,"MatFactorGetSolverPackage_C",NULL);CHKERRQ(ierr); 965 ierr = PetscObjectComposeFunction((PetscObject)A,"MatElementalHermitianGenDefiniteEig_C",NULL);CHKERRQ(ierr); 966 ierr = PetscFree(A->data);CHKERRQ(ierr); 967 PetscFunctionReturn(0); 968 } 969 970 #undef __FUNCT__ 971 #define __FUNCT__ "MatSetUp_Elemental" 972 PetscErrorCode MatSetUp_Elemental(Mat A) 973 { 974 Mat_Elemental *a = (Mat_Elemental*)A->data; 975 PetscErrorCode ierr; 976 PetscMPIInt rsize,csize; 977 978 PetscFunctionBegin; 979 ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 980 ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 981 982 a->emat->Resize(A->rmap->N,A->cmap->N);CHKERRQ(ierr); 983 elem::Zero(*a->emat); 984 985 ierr = MPI_Comm_size(A->rmap->comm,&rsize);CHKERRQ(ierr); 986 ierr = MPI_Comm_size(A->cmap->comm,&csize);CHKERRQ(ierr); 987 if (csize != rsize) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_INCOMP,"Cannot use row and column communicators of different sizes"); 988 a->commsize = rsize; 989 a->mr[0] = A->rmap->N % rsize; if (!a->mr[0]) a->mr[0] = rsize; 990 a->mr[1] = A->cmap->N % csize; if (!a->mr[1]) a->mr[1] = csize; 991 a->m[0] = A->rmap->N / rsize + (a->mr[0] != rsize); 992 a->m[1] = A->cmap->N / csize + (a->mr[1] != csize); 993 PetscFunctionReturn(0); 994 } 995 996 #undef __FUNCT__ 997 #define __FUNCT__ "MatAssemblyBegin_Elemental" 998 PetscErrorCode MatAssemblyBegin_Elemental(Mat A, MatAssemblyType type) 999 { 1000 Mat_Elemental *a = (Mat_Elemental*)A->data; 1001 1002 PetscFunctionBegin; 1003 a->interface->Detach(); 1004 a->interface->Attach(elem::LOCAL_TO_GLOBAL,*(a->emat)); 1005 PetscFunctionReturn(0); 1006 } 1007 1008 #undef __FUNCT__ 1009 #define __FUNCT__ "MatAssemblyEnd_Elemental" 1010 PetscErrorCode MatAssemblyEnd_Elemental(Mat A, MatAssemblyType type) 1011 { 1012 PetscFunctionBegin; 1013 /* Currently does nothing */ 1014 PetscFunctionReturn(0); 1015 } 1016 1017 #undef __FUNCT__ 1018 #define __FUNCT__ "MatLoad_Elemental" 1019 PetscErrorCode MatLoad_Elemental(Mat newMat, PetscViewer viewer) 1020 { 1021 PetscErrorCode ierr; 1022 Mat Adense,Ae; 1023 MPI_Comm comm; 1024 1025 PetscFunctionBegin; 1026 ierr = PetscObjectGetComm((PetscObject)newMat,&comm);CHKERRQ(ierr); 1027 ierr = MatCreate(comm,&Adense);CHKERRQ(ierr); 1028 ierr = MatSetType(Adense,MATDENSE);CHKERRQ(ierr); 1029 ierr = MatLoad(Adense,viewer);CHKERRQ(ierr); 1030 ierr = MatConvert(Adense, MATELEMENTAL, MAT_INITIAL_MATRIX,&Ae);CHKERRQ(ierr); 1031 ierr = MatDestroy(&Adense);CHKERRQ(ierr); 1032 ierr = MatHeaderReplace(newMat,Ae);CHKERRQ(ierr); 1033 PetscFunctionReturn(0); 1034 } 1035 1036 #undef __FUNCT__ 1037 #define __FUNCT__ "MatElementalHermitianGenDefiniteEig_Elemental" 1038 PetscErrorCode MatElementalHermitianGenDefiniteEig_Elemental(elem::HermitianGenDefiniteEigType type,elem::UpperOrLower uplo1,Mat A,Mat B,Mat *evals,Mat *evec,PetscReal vl,PetscReal vu) 1039 { 1040 PetscErrorCode ierr; 1041 Mat_Elemental *a=(Mat_Elemental*)A->data,*b=(Mat_Elemental*)B->data,*x; 1042 PetscElemScalar vle=(PetscElemScalar)vl,vue=(PetscElemScalar)vu; 1043 elem::HermitianGenDefiniteEigType eigtype = elem::AXBX; 1044 const elem::UpperOrLower uplo = elem::UPPER; 1045 const elem::SortType sort = elem::UNSORTED; /* UNSORTED, DESCENDING, ASCENDING */ 1046 MPI_Comm comm; 1047 Mat EVAL; 1048 1049 PetscFunctionBegin; 1050 /* Compute eigenvalues and eigenvectors */ 1051 elem::DistMatrix<PetscElemScalar,elem::VR,elem::STAR> w( *a->grid ); /* holding eigenvalues */ 1052 elem::DistMatrix<PetscElemScalar> X( *a->grid ); /* holding eigenvectors */ 1053 elem::HermitianGenDefiniteEig(eigtype,uplo,*a->emat,*b->emat,w,X,vle,vue,sort); 1054 /* elem::Print(w, "Eigenvalues"); */ 1055 1056 /* Wrap w and X into PETSc's MATMATELEMENTAL matrices */ 1057 ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 1058 ierr = MatCreate(comm,evec);CHKERRQ(ierr); 1059 ierr = MatSetSizes(*evec,PETSC_DECIDE,PETSC_DECIDE,X.Height(),X.Width());CHKERRQ(ierr); 1060 ierr = MatSetType(*evec,MATELEMENTAL);CHKERRQ(ierr); 1061 ierr = MatSetFromOptions(*evec);CHKERRQ(ierr); 1062 ierr = MatSetUp(*evec);CHKERRQ(ierr); 1063 ierr = MatAssemblyBegin(*evec,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1064 ierr = MatAssemblyEnd(*evec,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1065 1066 x = (Mat_Elemental*)(*evec)->data; 1067 //delete x->emat; //-- memory leak??? 1068 *x->emat = X; 1069 1070 ierr = MatCreate(comm,&EVAL);CHKERRQ(ierr); 1071 ierr = MatSetSizes(EVAL,PETSC_DECIDE,PETSC_DECIDE,w.Height(),w.Width());CHKERRQ(ierr); 1072 ierr = MatSetType(EVAL,MATELEMENTAL);CHKERRQ(ierr); 1073 ierr = MatSetFromOptions(EVAL);CHKERRQ(ierr); 1074 ierr = MatSetUp(EVAL);CHKERRQ(ierr); 1075 ierr = MatAssemblyBegin(EVAL,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1076 ierr = MatAssemblyEnd(EVAL,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1077 Mat_Elemental *e = (Mat_Elemental*)EVAL->data; 1078 *e->emat = w; //-- memory leak??? 1079 *evals = EVAL; 1080 1081 #if defined(MV) 1082 /* Test correctness norm = || - A*X + B*X*w || */ 1083 { 1084 PetscElemScalar alpha,beta; 1085 elem::DistMatrix<PetscElemScalar> Y(*a->grid); //tmp matrix 1086 alpha = 1.0; beta=0.0; 1087 elem::Gemm(elem::NORMAL,elem::NORMAL,alpha,*b->emat,X,beta,Y); //Y = B*X 1088 elem::DiagonalScale(elem::RIGHT,elem::NORMAL, w, Y); //Y = Y*w 1089 alpha = -1.0; beta=1.0; 1090 elem::Gemm(elem::NORMAL,elem::NORMAL,alpha,*a->emat,X,beta,Y); //Y = - A*X + B*X*w 1091 1092 PetscElemScalar norm = elem::FrobeniusNorm(Y); 1093 if ((*a->grid).Rank()==0) printf(" norm (- A*X + B*X*w) = %g\n",norm); 1094 } 1095 1096 { 1097 PetscMPIInt rank; 1098 ierr = MPI_Comm_rank(comm,&rank); 1099 printf("w: [%d] [%d, %d %d] %d; X: %d %d\n",rank,w.DistRank(),w.ColRank(),w.RowRank(),w.LocalHeight(),X.LocalHeight(),X.LocalWidth()); 1100 } 1101 #endif 1102 PetscFunctionReturn(0); 1103 } 1104 1105 #undef __FUNCT__ 1106 #define __FUNCT__ "MatElementalHermitianGenDefiniteEig" 1107 /*@ 1108 MatElementalHermitianGenDefiniteEig - 1109 1110 Logically Collective on Mat 1111 1112 Input Parameters: 1113 + F - the factored matrix obtained by calling MatGetFactor() from PETSc-MUMPS interface 1114 . icntl - index of MUMPS parameter array ICNTL() 1115 - ival - value of MUMPS ICNTL(icntl) 1116 1117 Options Database: 1118 . -mat_mumps_icntl_<icntl> <ival> 1119 1120 Level: beginner 1121 1122 References: MUMPS Users' Guide 1123 1124 .seealso: MatGetFactor() 1125 @*/ 1126 PetscErrorCode MatElementalHermitianGenDefiniteEig(elem::HermitianGenDefiniteEigType type,elem::UpperOrLower uplo,Mat A,Mat B,Mat *evals,Mat *evec,PetscReal vl,PetscReal vu) 1127 { 1128 PetscErrorCode ierr; 1129 1130 PetscFunctionBegin; 1131 ierr = PetscTryMethod(A,"MatElementalHermitianGenDefiniteEig_C",(elem::HermitianGenDefiniteEigType,elem::UpperOrLower,Mat,Mat,Mat*,Mat*,PetscReal,PetscReal),(type,uplo,A,B,evals,evec,vl,vu));CHKERRQ(ierr); 1132 PetscFunctionReturn(0); 1133 } 1134 1135 /* -------------------------------------------------------------------*/ 1136 static struct _MatOps MatOps_Values = { 1137 MatSetValues_Elemental, 1138 0, 1139 0, 1140 MatMult_Elemental, 1141 /* 4*/ MatMultAdd_Elemental, 1142 MatMultTranspose_Elemental, 1143 MatMultTransposeAdd_Elemental, 1144 MatSolve_Elemental, 1145 MatSolveAdd_Elemental, 1146 0, //MatSolveTranspose_Elemental, 1147 /*10*/ 0, //MatSolveTransposeAdd_Elemental, 1148 MatLUFactor_Elemental, 1149 MatCholeskyFactor_Elemental, 1150 0, 1151 MatTranspose_Elemental, 1152 /*15*/ MatGetInfo_Elemental, 1153 0, 1154 MatGetDiagonal_Elemental, 1155 MatDiagonalScale_Elemental, 1156 MatNorm_Elemental, 1157 /*20*/ MatAssemblyBegin_Elemental, 1158 MatAssemblyEnd_Elemental, 1159 0, //MatSetOption_Elemental, 1160 MatZeroEntries_Elemental, 1161 /*24*/ 0, 1162 MatLUFactorSymbolic_Elemental, 1163 MatLUFactorNumeric_Elemental, 1164 MatCholeskyFactorSymbolic_Elemental, 1165 MatCholeskyFactorNumeric_Elemental, 1166 /*29*/ MatSetUp_Elemental, 1167 0, 1168 0, 1169 0, 1170 0, 1171 /*34*/ MatDuplicate_Elemental, 1172 0, 1173 0, 1174 0, 1175 0, 1176 /*39*/ MatAXPY_Elemental, 1177 0, 1178 0, 1179 0, 1180 MatCopy_Elemental, 1181 /*44*/ 0, 1182 MatScale_Elemental, 1183 0, 1184 0, 1185 0, 1186 /*49*/ 0, 1187 0, 1188 0, 1189 0, 1190 0, 1191 /*54*/ 0, 1192 0, 1193 0, 1194 0, 1195 0, 1196 /*59*/ 0, 1197 MatDestroy_Elemental, 1198 MatView_Elemental, 1199 0, 1200 0, 1201 /*64*/ 0, 1202 0, 1203 0, 1204 0, 1205 0, 1206 /*69*/ 0, 1207 0, 1208 MatConvert_Elemental_Dense, 1209 0, 1210 0, 1211 /*74*/ 0, 1212 0, 1213 0, 1214 0, 1215 0, 1216 /*79*/ 0, 1217 0, 1218 0, 1219 0, 1220 MatLoad_Elemental, 1221 /*84*/ 0, 1222 0, 1223 0, 1224 0, 1225 0, 1226 /*89*/ MatMatMult_Elemental, 1227 MatMatMultSymbolic_Elemental, 1228 MatMatMultNumeric_Elemental, 1229 0, 1230 0, 1231 /*94*/ 0, 1232 MatMatTransposeMult_Elemental, 1233 MatMatTransposeMultSymbolic_Elemental, 1234 MatMatTransposeMultNumeric_Elemental, 1235 0, 1236 /*99*/ 0, 1237 0, 1238 0, 1239 MatConjugate_Elemental, 1240 0, 1241 /*104*/0, 1242 0, 1243 0, 1244 0, 1245 0, 1246 /*109*/MatMatSolve_Elemental, 1247 0, 1248 0, 1249 0, 1250 0, 1251 /*114*/0, 1252 0, 1253 0, 1254 0, 1255 0, 1256 /*119*/0, 1257 MatHermitianTranspose_Elemental, 1258 0, 1259 0, 1260 0, 1261 /*124*/0, 1262 0, 1263 0, 1264 0, 1265 0, 1266 /*129*/0, 1267 0, 1268 0, 1269 0, 1270 0, 1271 /*134*/0, 1272 0, 1273 0, 1274 0, 1275 0 1276 }; 1277 1278 /*MC 1279 MATELEMENTAL = "elemental" - A matrix type for dense matrices using the Elemental package 1280 1281 Options Database Keys: 1282 + -mat_type elemental - sets the matrix type to "elemental" during a call to MatSetFromOptions() 1283 - -mat_elemental_grid_height - sets Grid Height for 2D cyclic ordering of internal matrix 1284 1285 Level: beginner 1286 1287 .seealso: MATDENSE 1288 M*/ 1289 1290 #undef __FUNCT__ 1291 #define __FUNCT__ "MatCreate_Elemental" 1292 PETSC_EXTERN PetscErrorCode MatCreate_Elemental(Mat A) 1293 { 1294 Mat_Elemental *a; 1295 PetscErrorCode ierr; 1296 PetscBool flg,flg1; 1297 Mat_Elemental_Grid *commgrid; 1298 MPI_Comm icomm; 1299 PetscInt optv1; 1300 1301 PetscFunctionBegin; 1302 ierr = PetscElementalInitializePackage();CHKERRQ(ierr); 1303 ierr = PetscMemcpy(A->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1304 A->insertmode = NOT_SET_VALUES; 1305 1306 ierr = PetscNewLog(A,&a);CHKERRQ(ierr); 1307 A->data = (void*)a; 1308 1309 /* Set up the elemental matrix */ 1310 elem::mpi::Comm cxxcomm(PetscObjectComm((PetscObject)A)); 1311 1312 /* Grid needs to be shared between multiple Mats on the same communicator, implement by attribute caching on the MPI_Comm */ 1313 if (Petsc_Elemental_keyval == MPI_KEYVAL_INVALID) { 1314 ierr = MPI_Keyval_create(MPI_NULL_COPY_FN,MPI_NULL_DELETE_FN,&Petsc_Elemental_keyval,(void*)0); 1315 } 1316 ierr = PetscCommDuplicate(cxxcomm.comm,&icomm,NULL);CHKERRQ(ierr); 1317 ierr = MPI_Attr_get(icomm,Petsc_Elemental_keyval,(void**)&commgrid,(int*)&flg);CHKERRQ(ierr); 1318 if (!flg) { 1319 ierr = PetscNewLog(A,&commgrid);CHKERRQ(ierr); 1320 1321 ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)A),((PetscObject)A)->prefix,"Elemental Options","Mat");CHKERRQ(ierr); 1322 /* displayed default grid sizes (CommSize,1) are set by us arbitrarily until elem::Grid() is called */ 1323 ierr = PetscOptionsInt("-mat_elemental_grid_height","Grid Height","None",elem::mpi::Size(cxxcomm),&optv1,&flg1);CHKERRQ(ierr); 1324 if (flg1) { 1325 if (elem::mpi::Size(cxxcomm) % optv1 != 0) { 1326 SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_INCOMP,"Grid Height %D must evenly divide CommSize %D",optv1,(PetscInt)elem::mpi::Size(cxxcomm)); 1327 } 1328 commgrid->grid = new elem::Grid(cxxcomm,optv1); /* use user-provided grid height */ 1329 } else { 1330 commgrid->grid = new elem::Grid(cxxcomm); /* use Elemental default grid sizes */ 1331 } 1332 commgrid->grid_refct = 1; 1333 ierr = MPI_Attr_put(icomm,Petsc_Elemental_keyval,(void*)commgrid);CHKERRQ(ierr); 1334 PetscOptionsEnd(); 1335 } else { 1336 commgrid->grid_refct++; 1337 } 1338 ierr = PetscCommDestroy(&icomm);CHKERRQ(ierr); 1339 a->grid = commgrid->grid; 1340 a->emat = new elem::DistMatrix<PetscElemScalar>(*a->grid); 1341 a->esubmat = new elem::Matrix<PetscElemScalar>(1,1); 1342 a->interface = new elem::AxpyInterface<PetscElemScalar>; 1343 a->pivot = new elem::DistMatrix<PetscInt,elem::VC,elem::STAR>; 1344 1345 /* build cache for off array entries formed */ 1346 a->interface->Attach(elem::LOCAL_TO_GLOBAL,*(a->emat)); 1347 1348 ierr = PetscObjectComposeFunction((PetscObject)A,"MatGetOwnershipIS_C",MatGetOwnershipIS_Elemental);CHKERRQ(ierr); 1349 ierr = PetscObjectComposeFunction((PetscObject)A,"MatElementalHermitianGenDefiniteEig_C",MatElementalHermitianGenDefiniteEig_Elemental);CHKERRQ(ierr); 1350 1351 ierr = PetscObjectChangeTypeName((PetscObject)A,MATELEMENTAL);CHKERRQ(ierr); 1352 PetscFunctionReturn(0); 1353 } 1354 1355