1 #include <../src/mat/impls/elemental/matelemimpl.h> /*I "petscmat.h" I*/ 2 3 /* 4 The variable Petsc_Elemental_keyval is used to indicate an MPI attribute that 5 is attached to a communicator, in this case the attribute is a Mat_Elemental_Grid 6 */ 7 static PetscMPIInt Petsc_Elemental_keyval = MPI_KEYVAL_INVALID; 8 9 #undef __FUNCT__ 10 #define __FUNCT__ "PetscElementalInitializePackage" 11 /*@C 12 PetscElementalInitializePackage - Initialize Elemental package 13 14 Logically Collective 15 16 Input Arguments: 17 . path - the dynamic library path or PETSC_NULL 18 19 Level: developer 20 21 .seealso: MATELEMENTAL, PetscElementalFinalizePackage() 22 @*/ 23 PetscErrorCode PetscElementalInitializePackage(const char *path) 24 { 25 PetscErrorCode ierr; 26 27 PetscFunctionBegin; 28 if (elem::Initialized()) PetscFunctionReturn(0); 29 { /* We have already initialized MPI, so this song and dance is just to pass these variables (which won't be used by Elemental) through the interface that needs references */ 30 int zero = 0; 31 char **nothing = 0; 32 elem::Initialize(zero,nothing); 33 } 34 ierr = PetscRegisterFinalize(PetscElementalFinalizePackage);CHKERRQ(ierr); 35 PetscFunctionReturn(0); 36 } 37 38 #undef __FUNCT__ 39 #define __FUNCT__ "PetscElementalFinalizePackage" 40 /*@C 41 PetscElementalFinalizePackage - Finalize Elemental package 42 43 Logically Collective 44 45 Level: developer 46 47 .seealso: MATELEMENTAL, PetscElementalInitializePackage() 48 @*/ 49 PetscErrorCode PetscElementalFinalizePackage(void) 50 { 51 52 PetscFunctionBegin; 53 elem::Finalize(); 54 PetscFunctionReturn(0); 55 } 56 57 #undef __FUNCT__ 58 #define __FUNCT__ "MatView_Elemental" 59 static PetscErrorCode MatView_Elemental(Mat A,PetscViewer viewer) 60 { 61 PetscErrorCode ierr; 62 Mat_Elemental *a = (Mat_Elemental*)A->data; 63 PetscBool iascii; 64 65 PetscFunctionBegin; 66 ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 67 if (iascii) { 68 PetscViewerFormat format; 69 ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 70 if (format == PETSC_VIEWER_ASCII_INFO) { 71 /* call elemental viewing function */ 72 ierr = PetscViewerASCIIPrintf(viewer,"Elemental run parameters:\n");CHKERRQ(ierr); 73 ierr = PetscViewerASCIIPrintf(viewer," allocated entries=%d\n",(*a->emat).AllocatedMemory());CHKERRQ(ierr); 74 ierr = PetscViewerASCIIPrintf(viewer," grid height=%d, grid width=%d\n",(*a->emat).Grid().Height(),(*a->emat).Grid().Width());CHKERRQ(ierr); 75 if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 76 /* call elemental viewing function */ 77 ierr = PetscPrintf(((PetscObject)viewer)->comm,"test matview_elemental 2\n");CHKERRQ(ierr); 78 } 79 80 } else if (format == PETSC_VIEWER_DEFAULT) { 81 ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 82 ierr = PetscObjectPrintClassNamePrefixType((PetscObject)A,viewer,"Matrix Object");CHKERRQ(ierr); 83 a->emat->Print("Elemental matrix (cyclic ordering)"); 84 ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 85 if (A->factortype == MAT_FACTOR_NONE){ 86 Mat Adense; 87 ierr = PetscPrintf(((PetscObject)viewer)->comm,"Elemental matrix (explicit ordering)\n");CHKERRQ(ierr); 88 ierr = MatConvert(A,MATDENSE,MAT_INITIAL_MATRIX,&Adense);CHKERRQ(ierr); 89 ierr = MatView(Adense,viewer);CHKERRQ(ierr); 90 ierr = MatDestroy(&Adense);CHKERRQ(ierr); 91 } 92 } else SETERRQ(((PetscObject)viewer)->comm,PETSC_ERR_SUP,"Format"); 93 } else { 94 /* convert to dense format and call MatView() */ 95 Mat Adense; 96 ierr = PetscPrintf(((PetscObject)viewer)->comm,"Elemental matrix (explicit ordering)\n");CHKERRQ(ierr); 97 ierr = MatConvert(A,MATDENSE,MAT_INITIAL_MATRIX,&Adense);CHKERRQ(ierr); 98 ierr = MatView(Adense,viewer);CHKERRQ(ierr); 99 ierr = MatDestroy(&Adense);CHKERRQ(ierr); 100 } 101 PetscFunctionReturn(0); 102 } 103 104 #undef __FUNCT__ 105 #define __FUNCT__ "MatGetInfo_Elemental" 106 static PetscErrorCode MatGetInfo_Elemental(Mat A,MatInfoType flag,MatInfo *info) 107 { 108 Mat_Elemental *a = (Mat_Elemental*)A->data; 109 PetscMPIInt rank; 110 111 PetscFunctionBegin; 112 MPI_Comm_rank(((PetscObject)A)->comm,&rank); 113 114 /* if (!rank) printf(" .........MatGetInfo_Elemental ...\n"); */ 115 info->block_size = 1.0; 116 117 if (flag == MAT_LOCAL) { 118 info->nz_allocated = (double)(*a->emat).AllocatedMemory(); /* locally allocated */ 119 info->nz_used = info->nz_allocated; 120 } else if (flag == MAT_GLOBAL_MAX) { 121 //ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr); 122 /* see MatGetInfo_MPIAIJ() for getting global info->nz_allocated! */ 123 //SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP," MAT_GLOBAL_MAX not written yet"); 124 } else if (flag == MAT_GLOBAL_SUM) { 125 //SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP," MAT_GLOBAL_SUM not written yet"); 126 info->nz_allocated = (double)(*a->emat).AllocatedMemory(); /* locally allocated */ 127 info->nz_used = info->nz_allocated; /* assume Elemental does accurate allocation */ 128 //ierr = MPI_Allreduce(isend,irecv,1,MPIU_REAL,MPIU_SUM,((PetscObject)A)->comm);CHKERRQ(ierr); 129 //PetscPrintf(PETSC_COMM_SELF," ... [%d] locally allocated %g\n",rank,info->nz_allocated); 130 } 131 132 info->nz_unneeded = 0.0; 133 info->assemblies = (double)A->num_ass; 134 info->mallocs = 0; 135 info->memory = ((PetscObject)A)->mem; 136 info->fill_ratio_given = 0; /* determined by Elemental */ 137 info->fill_ratio_needed = 0; 138 info->factor_mallocs = 0; 139 PetscFunctionReturn(0); 140 } 141 142 #undef __FUNCT__ 143 #define __FUNCT__ "MatSetValues_Elemental" 144 static PetscErrorCode MatSetValues_Elemental(Mat A,PetscInt nr,const PetscInt *rows,PetscInt nc,const PetscInt *cols,const PetscScalar *vals,InsertMode imode) 145 { 146 PetscErrorCode ierr; 147 Mat_Elemental *a = (Mat_Elemental*)A->data; 148 PetscMPIInt rank; 149 PetscInt i,j,rrank,ridx,crank,cidx; 150 151 PetscFunctionBegin; 152 ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 153 154 const elem::Grid &grid = a->emat->Grid(); 155 for (i=0; i<nr; i++) { 156 PetscInt erow,ecol,elrow,elcol; 157 if (rows[i] < 0) continue; 158 P2RO(A,0,rows[i],&rrank,&ridx); 159 RO2E(A,0,rrank,ridx,&erow); 160 if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_PLIB,"Incorrect row translation"); 161 for (j=0; j<nc; j++) { 162 if (cols[j] < 0) continue; 163 P2RO(A,1,cols[j],&crank,&cidx); 164 RO2E(A,1,crank,cidx,&ecol); 165 if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_PLIB,"Incorrect col translation"); 166 if (erow % grid.MCSize() != grid.MCRank() || ecol % grid.MRSize() != grid.MRRank()){ /* off-proc entry */ 167 if (imode != ADD_VALUES) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only ADD_VALUES to off-processor entry is supported"); 168 /* PetscPrintf(PETSC_COMM_SELF,"[%D] add off-proc entry (%D,%D, %g) (%D %D)\n",rank,rows[i],cols[j],*(vals+i*nc),erow,ecol); */ 169 a->esubmat->Set(0,0, (PetscElemScalar)vals[i*nc+j]); 170 a->interface->Axpy(1.0,*(a->esubmat),erow,ecol); 171 continue; 172 } 173 elrow = erow / grid.MCSize(); 174 elcol = ecol / grid.MRSize(); 175 switch (imode) { 176 case INSERT_VALUES: a->emat->SetLocal(elrow,elcol,(PetscElemScalar)vals[i*nc+j]); break; 177 case ADD_VALUES: a->emat->UpdateLocal(elrow,elcol,(PetscElemScalar)vals[i*nc+j]); break; 178 default: SETERRQ1(((PetscObject)A)->comm,PETSC_ERR_SUP,"No support for InsertMode %d",(int)imode); 179 } 180 } 181 } 182 PetscFunctionReturn(0); 183 } 184 185 #undef __FUNCT__ 186 #define __FUNCT__ "MatMult_Elemental" 187 static PetscErrorCode MatMult_Elemental(Mat A,Vec X,Vec Y) 188 { 189 Mat_Elemental *a = (Mat_Elemental*)A->data; 190 PetscErrorCode ierr; 191 const PetscElemScalar *x; 192 PetscElemScalar *y; 193 PetscElemScalar one = 1,zero = 0; 194 195 PetscFunctionBegin; 196 ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 197 ierr = VecGetArray(Y,(PetscScalar **)&y);CHKERRQ(ierr); 198 { /* Scoping so that constructor is called before pointer is returned */ 199 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->cmap->N,1,0,x,A->cmap->n,*a->grid); 200 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ye(A->rmap->N,1,0,y,A->rmap->n,*a->grid); 201 elem::Gemv(elem::NORMAL,one,*a->emat,xe,zero,ye); 202 } 203 ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 204 ierr = VecRestoreArray(Y,(PetscScalar **)&y);CHKERRQ(ierr); 205 PetscFunctionReturn(0); 206 } 207 208 #undef __FUNCT__ 209 #define __FUNCT__ "MatMultTranspose_Elemental" 210 static PetscErrorCode MatMultTranspose_Elemental(Mat A,Vec X,Vec Y) 211 { 212 Mat_Elemental *a = (Mat_Elemental*)A->data; 213 PetscErrorCode ierr; 214 const PetscElemScalar *x; 215 PetscElemScalar *y; 216 PetscElemScalar one = 1,zero = 0; 217 218 PetscFunctionBegin; 219 ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 220 ierr = VecGetArray(Y,(PetscScalar **)&y);CHKERRQ(ierr); 221 { /* Scoping so that constructor is called before pointer is returned */ 222 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,x,A->rmap->n,*a->grid); 223 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ye(A->cmap->N,1,0,y,A->cmap->n,*a->grid); 224 elem::Gemv(elem::TRANSPOSE,one,*a->emat,xe,zero,ye); 225 } 226 ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 227 ierr = VecRestoreArray(Y,(PetscScalar **)&y);CHKERRQ(ierr); 228 PetscFunctionReturn(0); 229 } 230 231 #undef __FUNCT__ 232 #define __FUNCT__ "MatMultAdd_Elemental" 233 static PetscErrorCode MatMultAdd_Elemental(Mat A,Vec X,Vec Y,Vec Z) 234 { 235 Mat_Elemental *a = (Mat_Elemental*)A->data; 236 PetscErrorCode ierr; 237 const PetscElemScalar *x; 238 PetscElemScalar *z; 239 PetscElemScalar one = 1; 240 241 PetscFunctionBegin; 242 if (Y != Z) {ierr = VecCopy(Y,Z);CHKERRQ(ierr);} 243 ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 244 ierr = VecGetArray(Z,(PetscScalar **)&z);CHKERRQ(ierr); 245 { /* Scoping so that constructor is called before pointer is returned */ 246 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->cmap->N,1,0,x,A->cmap->n,*a->grid); 247 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ze(A->rmap->N,1,0,z,A->rmap->n,*a->grid); 248 elem::Gemv(elem::NORMAL,one,*a->emat,xe,one,ze); 249 } 250 ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 251 ierr = VecRestoreArray(Z,(PetscScalar **)&z);CHKERRQ(ierr); 252 PetscFunctionReturn(0); 253 } 254 255 #undef __FUNCT__ 256 #define __FUNCT__ "MatMultTransposeAdd_Elemental" 257 static PetscErrorCode MatMultTransposeAdd_Elemental(Mat A,Vec X,Vec Y,Vec Z) 258 { 259 Mat_Elemental *a = (Mat_Elemental*)A->data; 260 PetscErrorCode ierr; 261 const PetscElemScalar *x; 262 PetscElemScalar *z; 263 PetscElemScalar one = 1; 264 265 PetscFunctionBegin; 266 if (Y != Z) {ierr = VecCopy(Y,Z);CHKERRQ(ierr);} 267 ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 268 ierr = VecGetArray(Z,(PetscScalar **)&z);CHKERRQ(ierr); 269 { /* Scoping so that constructor is called before pointer is returned */ 270 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,x,A->rmap->n,*a->grid); 271 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ze(A->cmap->N,1,0,z,A->cmap->n,*a->grid); 272 elem::Gemv(elem::TRANSPOSE,one,*a->emat,xe,one,ze); 273 } 274 ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 275 ierr = VecRestoreArray(Z,(PetscScalar **)&z);CHKERRQ(ierr); 276 PetscFunctionReturn(0); 277 } 278 279 #undef __FUNCT__ 280 #define __FUNCT__ "MatMatMultNumeric_Elemental" 281 static PetscErrorCode MatMatMultNumeric_Elemental(Mat A,Mat B,Mat C) 282 { 283 Mat_Elemental *a = (Mat_Elemental*)A->data; 284 Mat_Elemental *b = (Mat_Elemental*)B->data; 285 Mat_Elemental *c = (Mat_Elemental*)C->data; 286 PetscElemScalar one = 1,zero = 0; 287 288 PetscFunctionBegin; 289 { /* Scoping so that constructor is called before pointer is returned */ 290 elem::Gemm(elem::NORMAL,elem::NORMAL,one,*a->emat,*b->emat,zero,*c->emat); 291 } 292 C->assembled = PETSC_TRUE; 293 PetscFunctionReturn(0); 294 } 295 296 #undef __FUNCT__ 297 #define __FUNCT__ "MatMatMultSymbolic_Elemental" 298 static PetscErrorCode MatMatMultSymbolic_Elemental(Mat A,Mat B,PetscReal fill,Mat *C) 299 { 300 PetscErrorCode ierr; 301 Mat Ce; 302 MPI_Comm comm=((PetscObject)A)->comm; 303 304 PetscFunctionBegin; 305 ierr = MatCreate(comm,&Ce);CHKERRQ(ierr); 306 ierr = MatSetSizes(Ce,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 307 ierr = MatSetType(Ce,MATELEMENTAL);CHKERRQ(ierr); 308 ierr = MatSetUp(Ce);CHKERRQ(ierr); 309 *C = Ce; 310 PetscFunctionReturn(0); 311 } 312 313 #undef __FUNCT__ 314 #define __FUNCT__ "MatMatMult_Elemental" 315 static PetscErrorCode MatMatMult_Elemental(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 316 { 317 PetscErrorCode ierr; 318 319 PetscFunctionBegin; 320 if (scall == MAT_INITIAL_MATRIX){ 321 ierr = PetscLogEventBegin(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 322 ierr = MatMatMultSymbolic_Elemental(A,B,1.0,C);CHKERRQ(ierr); 323 ierr = PetscLogEventEnd(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 324 } 325 ierr = PetscLogEventBegin(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 326 ierr = MatMatMultNumeric_Elemental(A,B,*C);CHKERRQ(ierr); 327 ierr = PetscLogEventEnd(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 328 PetscFunctionReturn(0); 329 } 330 331 #undef __FUNCT__ 332 #define __FUNCT__ "MatMatTransposeMultNumeric_Elemental" 333 static PetscErrorCode MatMatTransposeMultNumeric_Elemental(Mat A,Mat B,Mat C) 334 { 335 Mat_Elemental *a = (Mat_Elemental*)A->data; 336 Mat_Elemental *b = (Mat_Elemental*)B->data; 337 Mat_Elemental *c = (Mat_Elemental*)C->data; 338 PetscElemScalar one = 1,zero = 0; 339 340 PetscFunctionBegin; 341 { /* Scoping so that constructor is called before pointer is returned */ 342 elem::Gemm(elem::NORMAL,elem::TRANSPOSE,one,*a->emat,*b->emat,zero,*c->emat); 343 } 344 C->assembled = PETSC_TRUE; 345 PetscFunctionReturn(0); 346 } 347 348 #undef __FUNCT__ 349 #define __FUNCT__ "MatMatTransposeMultSymbolic_Elemental" 350 static PetscErrorCode MatMatTransposeMultSymbolic_Elemental(Mat A,Mat B,PetscReal fill,Mat *C) 351 { 352 PetscErrorCode ierr; 353 Mat Ce; 354 MPI_Comm comm=((PetscObject)A)->comm; 355 356 PetscFunctionBegin; 357 ierr = MatCreate(comm,&Ce);CHKERRQ(ierr); 358 ierr = MatSetSizes(Ce,A->rmap->n,B->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 359 ierr = MatSetType(Ce,MATELEMENTAL);CHKERRQ(ierr); 360 ierr = MatSetUp(Ce);CHKERRQ(ierr); 361 *C = Ce; 362 PetscFunctionReturn(0); 363 } 364 365 #undef __FUNCT__ 366 #define __FUNCT__ "MatMatTransposeMult_Elemental" 367 static PetscErrorCode MatMatTransposeMult_Elemental(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 368 { 369 PetscErrorCode ierr; 370 371 PetscFunctionBegin; 372 if (scall == MAT_INITIAL_MATRIX){ 373 ierr = PetscLogEventBegin(MAT_MatTransposeMultSymbolic,A,B,0,0);CHKERRQ(ierr); 374 ierr = MatMatMultSymbolic_Elemental(A,B,1.0,C);CHKERRQ(ierr); 375 ierr = PetscLogEventEnd(MAT_MatTransposeMultSymbolic,A,B,0,0);CHKERRQ(ierr); 376 } 377 ierr = PetscLogEventBegin(MAT_MatTransposeMultNumeric,A,B,0,0);CHKERRQ(ierr); 378 ierr = MatMatTransposeMultNumeric_Elemental(A,B,*C);CHKERRQ(ierr); 379 ierr = PetscLogEventEnd(MAT_MatTransposeMultNumeric,A,B,0,0);CHKERRQ(ierr); 380 PetscFunctionReturn(0); 381 } 382 383 #undef __FUNCT__ 384 #define __FUNCT__ "MatGetDiagonal_Elemental" 385 static PetscErrorCode MatGetDiagonal_Elemental(Mat X,Vec D) 386 { 387 Mat_Elemental *x = (Mat_Elemental*)X->data; 388 PetscElemScalar *d; 389 PetscErrorCode ierr; 390 391 PetscFunctionBegin; 392 ierr = VecGetArray(D,(PetscScalar **)&d);CHKERRQ(ierr); 393 if (X->rmap->N > X->cmap->N) { 394 elem::DistMatrix<PetscElemScalar,elem::MD,elem::STAR> de(X->cmap->N,1,0,d,X->cmap->n,*x->grid); 395 x->emat->GetDiagonal(de,0); 396 } else { 397 elem::DistMatrix<PetscElemScalar,elem::MD,elem::STAR> de(X->rmap->N,1,0,d,X->rmap->n,*x->grid); 398 x->emat->GetDiagonal(de,0); 399 } 400 ierr = VecRestoreArray(D,(PetscScalar **)&d);CHKERRQ(ierr); 401 PetscFunctionReturn(0); 402 } 403 404 #undef __FUNCT__ 405 #define __FUNCT__ "MatDiagonalScale_Elemental" 406 static PetscErrorCode MatDiagonalScale_Elemental(Mat X,Vec L,Vec R) 407 { 408 Mat_Elemental *x = (Mat_Elemental*)X->data; 409 const PetscElemScalar *d; 410 PetscErrorCode ierr; 411 412 PetscFunctionBegin; 413 if (L == PETSC_NULL) { 414 ierr = VecGetArrayRead(R,(const PetscScalar **)&d);CHKERRQ(ierr); 415 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> de(X->cmap->N,1,0,d,X->cmap->n,*x->grid); 416 elem::DiagonalScale(elem::RIGHT,elem::NORMAL,de,*x->emat); 417 ierr = VecRestoreArrayRead(R,(const PetscScalar **)&d);CHKERRQ(ierr); 418 } else { 419 ierr = VecGetArrayRead(L,(const PetscScalar **)&d);CHKERRQ(ierr); 420 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> de(X->rmap->N,1,0,d,X->rmap->n,*x->grid); 421 elem::DiagonalScale(elem::LEFT,elem::NORMAL,de,*x->emat); 422 ierr = VecRestoreArrayRead(L,(const PetscScalar **)&d);CHKERRQ(ierr); 423 } 424 PetscFunctionReturn(0); 425 } 426 427 #undef __FUNCT__ 428 #define __FUNCT__ "MatScale_Elemental" 429 static PetscErrorCode MatScale_Elemental(Mat X,PetscScalar a) 430 { 431 Mat_Elemental *x = (Mat_Elemental*)X->data; 432 433 PetscFunctionBegin; 434 elem::Scal((PetscElemScalar)a,*x->emat); 435 PetscFunctionReturn(0); 436 } 437 438 #undef __FUNCT__ 439 #define __FUNCT__ "MatAXPY_Elemental" 440 static PetscErrorCode MatAXPY_Elemental(Mat Y,PetscScalar a,Mat X,MatStructure str) 441 { 442 Mat_Elemental *x = (Mat_Elemental*)X->data; 443 Mat_Elemental *y = (Mat_Elemental*)Y->data; 444 445 PetscFunctionBegin; 446 elem::Axpy((PetscElemScalar)a,*x->emat,*y->emat); 447 PetscFunctionReturn(0); 448 } 449 450 #undef __FUNCT__ 451 #define __FUNCT__ "MatCopy_Elemental" 452 static PetscErrorCode MatCopy_Elemental(Mat A,Mat B,MatStructure str) 453 { 454 Mat_Elemental *a=(Mat_Elemental*)A->data; 455 Mat_Elemental *b=(Mat_Elemental*)B->data; 456 457 PetscFunctionBegin; 458 elem::Copy(*a->emat,*b->emat); 459 PetscFunctionReturn(0); 460 } 461 462 #undef __FUNCT__ 463 #define __FUNCT__ "MatDuplicate_Elemental" 464 static PetscErrorCode MatDuplicate_Elemental(Mat A,MatDuplicateOption op,Mat *B) 465 { 466 Mat Be; 467 MPI_Comm comm=((PetscObject)A)->comm; 468 Mat_Elemental *a=(Mat_Elemental*)A->data; 469 PetscErrorCode ierr; 470 471 PetscFunctionBegin; 472 ierr = MatCreate(comm,&Be);CHKERRQ(ierr); 473 ierr = MatSetSizes(Be,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 474 ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr); 475 ierr = MatSetUp(Be);CHKERRQ(ierr); 476 *B = Be; 477 if (op == MAT_COPY_VALUES) { 478 Mat_Elemental *b=(Mat_Elemental*)Be->data; 479 elem::Copy(*a->emat,*b->emat); 480 } 481 Be->assembled = PETSC_TRUE; 482 PetscFunctionReturn(0); 483 } 484 485 #undef __FUNCT__ 486 #define __FUNCT__ "MatTranspose_Elemental" 487 static PetscErrorCode MatTranspose_Elemental(Mat A,MatReuse reuse,Mat *B) 488 { 489 Mat Be; 490 PetscErrorCode ierr; 491 MPI_Comm comm=((PetscObject)A)->comm; 492 Mat_Elemental *a = (Mat_Elemental*)A->data, *b; 493 494 PetscFunctionBegin; 495 /* Only out-of-place supported */ 496 if (reuse == MAT_INITIAL_MATRIX){ 497 ierr = MatCreate(comm,&Be);CHKERRQ(ierr); 498 ierr = MatSetSizes(Be,A->cmap->n,A->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 499 ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr); 500 ierr = MatSetUp(Be);CHKERRQ(ierr); 501 *B = Be; 502 } 503 b = (Mat_Elemental*)Be->data; 504 elem::Transpose(*a->emat,*b->emat); 505 Be->assembled = PETSC_TRUE; 506 PetscFunctionReturn(0); 507 } 508 509 #undef __FUNCT__ 510 #define __FUNCT__ "MatConjugate_Elemental" 511 static PetscErrorCode MatConjugate_Elemental(Mat A) 512 { 513 Mat_Elemental *a = (Mat_Elemental*)A->data; 514 515 PetscFunctionBegin; 516 elem::Conjugate(*a->emat); 517 PetscFunctionReturn(0); 518 } 519 520 #undef __FUNCT__ 521 #define __FUNCT__ "MatHermitianTranspose_Elemental" 522 static PetscErrorCode MatHermitianTranspose_Elemental(Mat A,MatReuse reuse,Mat *B) 523 { 524 Mat Be; 525 PetscErrorCode ierr; 526 MPI_Comm comm=((PetscObject)A)->comm; 527 Mat_Elemental *a = (Mat_Elemental*)A->data, *b; 528 529 PetscFunctionBegin; 530 /* Only out-of-place supported */ 531 if (reuse == MAT_INITIAL_MATRIX){ 532 ierr = MatCreate(comm,&Be);CHKERRQ(ierr); 533 ierr = MatSetSizes(Be,A->cmap->n,A->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 534 ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr); 535 ierr = MatSetUp(Be);CHKERRQ(ierr); 536 *B = Be; 537 } 538 b = (Mat_Elemental*)Be->data; 539 elem::Adjoint(*a->emat,*b->emat); 540 Be->assembled = PETSC_TRUE; 541 PetscFunctionReturn(0); 542 } 543 544 #undef __FUNCT__ 545 #define __FUNCT__ "MatSolve_Elemental" 546 static PetscErrorCode MatSolve_Elemental(Mat A,Vec B,Vec X) 547 { 548 Mat_Elemental *a = (Mat_Elemental*)A->data; 549 PetscErrorCode ierr; 550 PetscElemScalar *x; 551 552 PetscFunctionBegin; 553 ierr = VecCopy(B,X);CHKERRQ(ierr); 554 ierr = VecGetArray(X,(PetscScalar **)&x);CHKERRQ(ierr); 555 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,x,A->rmap->n,*a->grid); 556 elem::DistMatrix<PetscElemScalar,elem::MC,elem::MR> xer = xe; 557 switch (A->factortype) { 558 case MAT_FACTOR_LU: 559 if ((*a->pivot).AllocatedMemory()) { 560 elem::SolveAfterLU(elem::NORMAL,*a->emat,*a->pivot,xer); 561 elem::Copy(xer,xe); 562 } else { 563 elem::SolveAfterLU(elem::NORMAL,*a->emat,xer); 564 elem::Copy(xer,xe); 565 } 566 break; 567 case MAT_FACTOR_CHOLESKY: 568 elem::SolveAfterCholesky(elem::UPPER,elem::NORMAL,*a->emat,xer); 569 elem::Copy(xer,xe); 570 break; 571 default: 572 SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unfactored Matrix or Unsupported MatFactorType"); 573 break; 574 } 575 ierr = VecRestoreArray(X,(PetscScalar **)&x);CHKERRQ(ierr); 576 PetscFunctionReturn(0); 577 } 578 579 #undef __FUNCT__ 580 #define __FUNCT__ "MatSolveAdd_Elemental" 581 static PetscErrorCode MatSolveAdd_Elemental(Mat A,Vec B,Vec Y,Vec X) 582 { 583 PetscErrorCode ierr; 584 585 PetscFunctionBegin; 586 ierr = MatSolve_Elemental(A,B,X);CHKERRQ(ierr); 587 ierr = VecAXPY(X,1,Y);CHKERRQ(ierr); 588 PetscFunctionReturn(0); 589 } 590 591 #undef __FUNCT__ 592 #define __FUNCT__ "MatMatSolve_Elemental" 593 static PetscErrorCode MatMatSolve_Elemental(Mat A,Mat B,Mat X) 594 { 595 Mat_Elemental *a=(Mat_Elemental*)A->data; 596 Mat_Elemental *b=(Mat_Elemental*)B->data; 597 Mat_Elemental *x=(Mat_Elemental*)X->data; 598 599 PetscFunctionBegin; 600 elem::Copy(*b->emat,*x->emat); 601 switch (A->factortype) { 602 case MAT_FACTOR_LU: 603 if ((*a->pivot).AllocatedMemory()) { 604 elem::SolveAfterLU(elem::NORMAL,*a->emat,*a->pivot,*x->emat); 605 } else { 606 elem::SolveAfterLU(elem::NORMAL,*a->emat,*x->emat); 607 } 608 break; 609 case MAT_FACTOR_CHOLESKY: 610 elem::SolveAfterCholesky(elem::UPPER,elem::NORMAL,*a->emat,*x->emat); 611 break; 612 default: 613 SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unfactored Matrix or Unsupported MatFactorType"); 614 break; 615 } 616 PetscFunctionReturn(0); 617 } 618 619 #undef __FUNCT__ 620 #define __FUNCT__ "MatLUFactor_Elemental" 621 static PetscErrorCode MatLUFactor_Elemental(Mat A,IS row,IS col,const MatFactorInfo *info) 622 { 623 Mat_Elemental *a = (Mat_Elemental*)A->data; 624 625 PetscFunctionBegin; 626 if (info->dtcol){ 627 elem::LU(*a->emat,*a->pivot); 628 } else { 629 elem::LU(*a->emat); 630 } 631 A->factortype = MAT_FACTOR_LU; 632 A->assembled = PETSC_TRUE; 633 PetscFunctionReturn(0); 634 } 635 636 #undef __FUNCT__ 637 #define __FUNCT__ "MatLUFactorNumeric_Elemental" 638 static PetscErrorCode MatLUFactorNumeric_Elemental(Mat F,Mat A,const MatFactorInfo *info) 639 { 640 PetscErrorCode ierr; 641 642 PetscFunctionBegin; 643 ierr = MatCopy(A,F,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 644 ierr = MatLUFactor_Elemental(F,0,0,info);CHKERRQ(ierr); 645 PetscFunctionReturn(0); 646 } 647 648 #undef __FUNCT__ 649 #define __FUNCT__ "MatLUFactorSymbolic_Elemental" 650 static PetscErrorCode MatLUFactorSymbolic_Elemental(Mat F,Mat A,IS r,IS c,const MatFactorInfo *info) 651 { 652 PetscFunctionBegin; 653 /* F is create and allocated by MatGetFactor_elemental_petsc(), skip this routine. */ 654 PetscFunctionReturn(0); 655 } 656 657 #undef __FUNCT__ 658 #define __FUNCT__ "MatCholeskyFactor_Elemental" 659 static PetscErrorCode MatCholeskyFactor_Elemental(Mat A,IS perm,const MatFactorInfo *info) 660 { 661 Mat_Elemental *a = (Mat_Elemental*)A->data; 662 elem::DistMatrix<PetscElemScalar,elem::MC,elem::STAR> d; 663 664 PetscFunctionBegin; 665 elem::Cholesky(elem::UPPER,*a->emat); 666 A->factortype = MAT_FACTOR_CHOLESKY; 667 A->assembled = PETSC_TRUE; 668 PetscFunctionReturn(0); 669 } 670 671 #undef __FUNCT__ 672 #define __FUNCT__ "MatCholeskyFactorNumeric_Elemental" 673 static PetscErrorCode MatCholeskyFactorNumeric_Elemental(Mat F,Mat A,const MatFactorInfo *info) 674 { 675 PetscErrorCode ierr; 676 677 PetscFunctionBegin; 678 ierr = MatCopy(A,F,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 679 ierr = MatCholeskyFactor_Elemental(F,0,info);CHKERRQ(ierr); 680 PetscFunctionReturn(0); 681 } 682 683 #undef __FUNCT__ 684 #define __FUNCT__ "MatCholeskyFactorSymbolic_Elemental" 685 static PetscErrorCode MatCholeskyFactorSymbolic_Elemental(Mat F,Mat A,IS perm,const MatFactorInfo *info) 686 { 687 PetscFunctionBegin; 688 /* F is create and allocated by MatGetFactor_elemental_petsc(), skip this routine. */ 689 PetscFunctionReturn(0); 690 } 691 692 EXTERN_C_BEGIN 693 #undef __FUNCT__ 694 #define __FUNCT__ "MatFactorGetSolverPackage_elemental_elemental" 695 PetscErrorCode MatFactorGetSolverPackage_elemental_elemental(Mat A,const MatSolverPackage *type) 696 { 697 PetscFunctionBegin; 698 *type = MATSOLVERELEMENTAL; 699 PetscFunctionReturn(0); 700 } 701 EXTERN_C_END 702 703 EXTERN_C_BEGIN 704 #undef __FUNCT__ 705 #define __FUNCT__ "MatGetFactor_elemental_elemental" 706 static PetscErrorCode MatGetFactor_elemental_elemental(Mat A,MatFactorType ftype,Mat *F) 707 { 708 Mat B; 709 PetscErrorCode ierr; 710 711 PetscFunctionBegin; 712 /* Create the factorization matrix */ 713 ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr); 714 ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 715 ierr = MatSetType(B,MATELEMENTAL);CHKERRQ(ierr); 716 ierr = MatSetUp(B);CHKERRQ(ierr); 717 B->factortype = ftype; 718 ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatFactorGetSolverPackage_C","MatFactorGetSolverPackage_elemental_elemental",MatFactorGetSolverPackage_elemental_elemental);CHKERRQ(ierr); 719 *F = B; 720 PetscFunctionReturn(0); 721 } 722 EXTERN_C_END 723 724 #undef __FUNCT__ 725 #define __FUNCT__ "MatNorm_Elemental" 726 static PetscErrorCode MatNorm_Elemental(Mat A,NormType type,PetscReal *nrm) 727 { 728 Mat_Elemental *a=(Mat_Elemental*)A->data; 729 730 PetscFunctionBegin; 731 switch (type){ 732 case NORM_1: 733 *nrm = elem::Norm(*a->emat,elem::ONE_NORM); 734 break; 735 case NORM_FROBENIUS: 736 *nrm = elem::Norm(*a->emat,elem::FROBENIUS_NORM); 737 break; 738 case NORM_INFINITY: 739 *nrm = elem::Norm(*a->emat,elem::INFINITY_NORM); 740 break; 741 default: 742 printf("Error: unsupported norm type!\n"); 743 } 744 PetscFunctionReturn(0); 745 } 746 747 #undef __FUNCT__ 748 #define __FUNCT__ "MatZeroEntries_Elemental" 749 static PetscErrorCode MatZeroEntries_Elemental(Mat A) 750 { 751 Mat_Elemental *a=(Mat_Elemental*)A->data; 752 753 PetscFunctionBegin; 754 elem::Zero(*a->emat); 755 PetscFunctionReturn(0); 756 } 757 758 EXTERN_C_BEGIN 759 #undef __FUNCT__ 760 #define __FUNCT__ "MatGetOwnershipIS_Elemental" 761 static PetscErrorCode MatGetOwnershipIS_Elemental(Mat A,IS *rows,IS *cols) 762 { 763 Mat_Elemental *a = (Mat_Elemental*)A->data; 764 PetscErrorCode ierr; 765 PetscInt i,m,shift,stride,*idx; 766 767 PetscFunctionBegin; 768 if (rows) { 769 m = a->emat->LocalHeight(); 770 shift = a->emat->ColShift(); 771 stride = a->emat->ColStride(); 772 ierr = PetscMalloc(m*sizeof(PetscInt),&idx);CHKERRQ(ierr); 773 for (i=0; i<m; i++) { 774 PetscInt rank,offset; 775 E2RO(A,0,shift+i*stride,&rank,&offset); 776 RO2P(A,0,rank,offset,&idx[i]); 777 } 778 ierr = ISCreateGeneral(PETSC_COMM_SELF,m,idx,PETSC_OWN_POINTER,rows);CHKERRQ(ierr); 779 } 780 if (cols) { 781 m = a->emat->LocalWidth(); 782 shift = a->emat->RowShift(); 783 stride = a->emat->RowStride(); 784 ierr = PetscMalloc(m*sizeof(PetscInt),&idx);CHKERRQ(ierr); 785 for (i=0; i<m; i++) { 786 PetscInt rank,offset; 787 E2RO(A,1,shift+i*stride,&rank,&offset); 788 RO2P(A,1,rank,offset,&idx[i]); 789 } 790 ierr = ISCreateGeneral(PETSC_COMM_SELF,m,idx,PETSC_OWN_POINTER,cols);CHKERRQ(ierr); 791 } 792 PetscFunctionReturn(0); 793 } 794 EXTERN_C_END 795 796 #undef __FUNCT__ 797 #define __FUNCT__ "MatConvert_Elemental_Dense" 798 static PetscErrorCode MatConvert_Elemental_Dense(Mat A,const MatType newtype,MatReuse reuse,Mat *B) 799 { 800 Mat Bmpi; 801 Mat_Elemental *a = (Mat_Elemental*)A->data; 802 MPI_Comm comm=((PetscObject)A)->comm; 803 PetscErrorCode ierr; 804 PetscInt rrank,ridx,crank,cidx,nrows,ncols,i,j; 805 PetscElemScalar v; 806 807 PetscFunctionBegin; 808 if (strcmp(newtype,MATDENSE) && strcmp(newtype,MATSEQDENSE) && strcmp(newtype,MATMPIDENSE)) { 809 SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unsupported New MatType: must be MATDENSE, MATSEQDENSE or MATMPIDENSE"); 810 } 811 ierr = MatCreate(comm,&Bmpi);CHKERRQ(ierr); 812 ierr = MatSetSizes(Bmpi,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 813 ierr = MatSetType(Bmpi,MATDENSE);CHKERRQ(ierr); 814 ierr = MatSetUp(Bmpi);CHKERRQ(ierr); 815 ierr = MatGetSize(A,&nrows,&ncols);CHKERRQ(ierr); 816 for (i=0; i<nrows; i++) { 817 PetscInt erow,ecol; 818 P2RO(A,0,i,&rrank,&ridx); 819 RO2E(A,0,rrank,ridx,&erow); 820 if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect row translation"); 821 for (j=0; j<ncols; j++) { 822 P2RO(A,1,j,&crank,&cidx); 823 RO2E(A,1,crank,cidx,&ecol); 824 if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect col translation"); 825 v = a->emat->Get(erow,ecol); 826 ierr = MatSetValues(Bmpi,1,&i,1,&j,(PetscScalar *)&v,INSERT_VALUES);CHKERRQ(ierr); 827 } 828 } 829 ierr = MatAssemblyBegin(Bmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 830 ierr = MatAssemblyEnd(Bmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 831 if (reuse == MAT_REUSE_MATRIX) { 832 ierr = MatHeaderReplace(A,Bmpi);CHKERRQ(ierr); 833 } else { 834 *B = Bmpi; 835 } 836 PetscFunctionReturn(0); 837 } 838 839 #undef __FUNCT__ 840 #define __FUNCT__ "MatDestroy_Elemental" 841 static PetscErrorCode MatDestroy_Elemental(Mat A) 842 { 843 Mat_Elemental *a = (Mat_Elemental*)A->data; 844 PetscErrorCode ierr; 845 Mat_Elemental_Grid *commgrid; 846 PetscBool flg; 847 MPI_Comm icomm; 848 849 PetscFunctionBegin; 850 a->interface->Detach(); 851 delete a->interface; 852 delete a->esubmat; 853 delete a->emat; 854 855 elem::mpi::Comm cxxcomm(((PetscObject)A)->comm); 856 ierr = PetscCommDuplicate(cxxcomm,&icomm,PETSC_NULL);CHKERRQ(ierr); 857 ierr = MPI_Attr_get(icomm,Petsc_Elemental_keyval,(void**)&commgrid,(int*)&flg);CHKERRQ(ierr); 858 if (--commgrid->grid_refct == 0) { 859 delete commgrid->grid; 860 ierr = PetscFree(commgrid);CHKERRQ(ierr); 861 } 862 ierr = PetscCommDestroy(&icomm);CHKERRQ(ierr); 863 ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetOwnershipIS_C","",PETSC_NULL);CHKERRQ(ierr); 864 ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetFactor_petsc_C","",PETSC_NULL);CHKERRQ(ierr); 865 ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatFactorGetSolverPackage_C","",PETSC_NULL);CHKERRQ(ierr); 866 ierr = PetscFree(A->data);CHKERRQ(ierr); 867 PetscFunctionReturn(0); 868 } 869 870 #undef __FUNCT__ 871 #define __FUNCT__ "MatSetUp_Elemental" 872 PetscErrorCode MatSetUp_Elemental(Mat A) 873 { 874 Mat_Elemental *a = (Mat_Elemental*)A->data; 875 PetscErrorCode ierr; 876 PetscMPIInt rsize,csize; 877 878 PetscFunctionBegin; 879 ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 880 ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 881 882 a->emat->ResizeTo(A->rmap->N,A->cmap->N);CHKERRQ(ierr); 883 elem::Zero(*a->emat); 884 885 ierr = MPI_Comm_size(A->rmap->comm,&rsize);CHKERRQ(ierr); 886 ierr = MPI_Comm_size(A->cmap->comm,&csize);CHKERRQ(ierr); 887 if (csize != rsize) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_ARG_INCOMP,"Cannot use row and column communicators of different sizes"); 888 a->commsize = rsize; 889 a->mr[0] = A->rmap->N % rsize; if (!a->mr[0]) a->mr[0] = rsize; 890 a->mr[1] = A->cmap->N % csize; if (!a->mr[1]) a->mr[1] = csize; 891 a->m[0] = A->rmap->N / rsize + (a->mr[0] != rsize); 892 a->m[1] = A->cmap->N / csize + (a->mr[1] != csize); 893 PetscFunctionReturn(0); 894 } 895 896 #undef __FUNCT__ 897 #define __FUNCT__ "MatAssemblyBegin_Elemental" 898 PetscErrorCode MatAssemblyBegin_Elemental(Mat A, MatAssemblyType type) 899 { 900 Mat_Elemental *a = (Mat_Elemental*)A->data; 901 902 PetscFunctionBegin; 903 a->interface->Detach(); 904 a->interface->Attach(elem::LOCAL_TO_GLOBAL,*(a->emat)); 905 PetscFunctionReturn(0); 906 } 907 908 #undef __FUNCT__ 909 #define __FUNCT__ "MatAssemblyEnd_Elemental" 910 PetscErrorCode MatAssemblyEnd_Elemental(Mat A, MatAssemblyType type) 911 { 912 PetscFunctionBegin; 913 /* Currently does nothing */ 914 PetscFunctionReturn(0); 915 } 916 917 /* -------------------------------------------------------------------*/ 918 static struct _MatOps MatOps_Values = { 919 MatSetValues_Elemental, 920 0, 921 0, 922 MatMult_Elemental, 923 /* 4*/ MatMultAdd_Elemental, 924 MatMultTranspose_Elemental, 925 MatMultTransposeAdd_Elemental, 926 MatSolve_Elemental, 927 MatSolveAdd_Elemental, 928 0, //MatSolveTranspose_Elemental, 929 /*10*/ 0, //MatSolveTransposeAdd_Elemental, 930 MatLUFactor_Elemental, 931 MatCholeskyFactor_Elemental, 932 0, 933 MatTranspose_Elemental, 934 /*15*/ MatGetInfo_Elemental, 935 0, 936 MatGetDiagonal_Elemental, 937 MatDiagonalScale_Elemental, 938 MatNorm_Elemental, 939 /*20*/ MatAssemblyBegin_Elemental, 940 MatAssemblyEnd_Elemental, 941 0, //MatSetOption_Elemental, 942 MatZeroEntries_Elemental, 943 /*24*/ 0, 944 MatLUFactorSymbolic_Elemental, 945 MatLUFactorNumeric_Elemental, 946 MatCholeskyFactorSymbolic_Elemental, 947 MatCholeskyFactorNumeric_Elemental, 948 /*29*/ MatSetUp_Elemental, 949 0, 950 0, 951 0, 952 0, 953 /*34*/ MatDuplicate_Elemental, 954 0, 955 0, 956 0, 957 0, 958 /*39*/ MatAXPY_Elemental, 959 0, 960 0, 961 0, 962 MatCopy_Elemental, 963 /*44*/ 0, 964 MatScale_Elemental, 965 0, 966 0, 967 0, 968 /*49*/ 0, 969 0, 970 0, 971 0, 972 0, 973 /*54*/ 0, 974 0, 975 0, 976 0, 977 0, 978 /*59*/ 0, 979 MatDestroy_Elemental, 980 MatView_Elemental, 981 0, 982 0, 983 /*64*/ 0, 984 0, 985 0, 986 0, 987 0, 988 /*69*/ 0, 989 0, 990 MatConvert_Elemental_Dense, 991 0, 992 0, 993 /*74*/ 0, 994 0, 995 0, 996 0, 997 0, 998 /*79*/ 0, 999 0, 1000 0, 1001 0, 1002 0, 1003 /*84*/ 0, 1004 0, 1005 0, 1006 0, 1007 0, 1008 /*89*/ MatMatMult_Elemental, 1009 MatMatMultSymbolic_Elemental, 1010 MatMatMultNumeric_Elemental, 1011 0, 1012 0, 1013 /*94*/ 0, 1014 MatMatTransposeMult_Elemental, 1015 MatMatTransposeMultSymbolic_Elemental, 1016 MatMatTransposeMultNumeric_Elemental, 1017 0, 1018 /*99*/ 0, 1019 0, 1020 0, 1021 MatConjugate_Elemental, 1022 0, 1023 /*104*/0, 1024 0, 1025 0, 1026 0, 1027 0, 1028 /*109*/MatMatSolve_Elemental, 1029 0, 1030 0, 1031 0, 1032 0, 1033 /*114*/0, 1034 0, 1035 0, 1036 0, 1037 0, 1038 /*119*/0, 1039 MatHermitianTranspose_Elemental, 1040 0, 1041 0, 1042 0, 1043 /*124*/0, 1044 0, 1045 0, 1046 0, 1047 0, 1048 /*129*/0, 1049 0, 1050 0, 1051 0, 1052 0, 1053 /*134*/0, 1054 0, 1055 0, 1056 0, 1057 0 1058 }; 1059 1060 /*MC 1061 MATELEMENTAL = "elemental" - A matrix type for dense matrices using the Elemental package 1062 1063 Options Database Keys: 1064 . -mat_type elemental - sets the matrix type to "elemental" during a call to MatSetFromOptions() 1065 . -mat_elemental_grid_height - sets Grid Height 1066 . -mat_elemental_grid_width - sets Grid Width 1067 1068 Level: beginner 1069 1070 .seealso: MATDENSE 1071 M*/ 1072 1073 #undef __FUNCT__ 1074 #define __FUNCT__ "MatCreate_Elemental" 1075 PETSC_EXTERN_C PetscErrorCode MatCreate_Elemental(Mat A) 1076 { 1077 Mat_Elemental *a; 1078 PetscErrorCode ierr; 1079 PetscBool flg,flg1,flg2; 1080 Mat_Elemental_Grid *commgrid; 1081 MPI_Comm icomm; 1082 PetscInt optv1,optv2; 1083 1084 PetscFunctionBegin; 1085 ierr = PetscElementalInitializePackage(PETSC_NULL);CHKERRQ(ierr); 1086 ierr = PetscMemcpy(A->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1087 A->insertmode = NOT_SET_VALUES; 1088 1089 ierr = PetscNewLog(A,Mat_Elemental,&a);CHKERRQ(ierr); 1090 A->data = (void*)a; 1091 1092 /* Set up the elemental matrix */ 1093 elem::mpi::Comm cxxcomm(((PetscObject)A)->comm); 1094 1095 /* Grid needs to be shared between multiple Mats on the same communicator, implement by attribute caching on the MPI_Comm */ 1096 if (Petsc_Elemental_keyval == MPI_KEYVAL_INVALID) { 1097 ierr = MPI_Keyval_create(MPI_NULL_COPY_FN,MPI_NULL_DELETE_FN,&Petsc_Elemental_keyval,(void*)0); 1098 } 1099 ierr = PetscCommDuplicate(cxxcomm,&icomm,PETSC_NULL);CHKERRQ(ierr); 1100 ierr = MPI_Attr_get(icomm,Petsc_Elemental_keyval,(void**)&commgrid,(int*)&flg);CHKERRQ(ierr); 1101 if (!flg) { 1102 ierr = PetscNewLog(A,Mat_Elemental_Grid,&commgrid);CHKERRQ(ierr); 1103 1104 ierr = PetscOptionsBegin(((PetscObject)A)->comm,((PetscObject)A)->prefix,"Elemental Options","Mat");CHKERRQ(ierr); 1105 /* displayed default grid sizes (CommSize,1) are set by us arbitrarily until elem::Grid() is called */ 1106 ierr = PetscOptionsInt("-mat_elemental_grid_height","Grid Height","None",elem::mpi::CommSize(cxxcomm),&optv1,&flg1);CHKERRQ(ierr); 1107 ierr = PetscOptionsInt("-mat_elemental_grid_width","Grid Width","None",1,&optv2,&flg2);CHKERRQ(ierr); 1108 if (flg1 || flg2) { 1109 if (optv1*optv2 != elem::mpi::CommSize(cxxcomm)) { 1110 SETERRQ(((PetscObject)A)->comm,PETSC_ERR_ARG_INCOMP,"Grid Height times Grid Width must equal CommSize"); 1111 } 1112 commgrid->grid = new elem::Grid(cxxcomm,optv1,optv2); /* use user-provided grid sizes */ 1113 } else { 1114 commgrid->grid = new elem::Grid(cxxcomm); /* use Elemental default grid sizes */ 1115 } 1116 commgrid->grid_refct = 1; 1117 ierr = MPI_Attr_put(icomm,Petsc_Elemental_keyval,(void*)commgrid);CHKERRQ(ierr); 1118 PetscOptionsEnd(); 1119 } else { 1120 commgrid->grid_refct++; 1121 } 1122 ierr = PetscCommDestroy(&icomm);CHKERRQ(ierr); 1123 a->grid = commgrid->grid; 1124 a->emat = new elem::DistMatrix<PetscElemScalar>(*a->grid); 1125 a->esubmat = new elem::Matrix<PetscElemScalar>(1,1); 1126 a->interface = new elem::AxpyInterface<PetscElemScalar>; 1127 a->pivot = new elem::DistMatrix<PetscInt,elem::VC,elem::STAR>; 1128 1129 /* build cache for off array entries formed */ 1130 a->interface->Attach(elem::LOCAL_TO_GLOBAL,*(a->emat)); 1131 1132 ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetOwnershipIS_C","MatGetOwnershipIS_Elemental",MatGetOwnershipIS_Elemental);CHKERRQ(ierr); 1133 ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatGetFactor_elemental_C","MatGetFactor_elemental_elemental",MatGetFactor_elemental_elemental);CHKERRQ(ierr); 1134 1135 ierr = PetscObjectChangeTypeName((PetscObject)A,MATELEMENTAL);CHKERRQ(ierr); 1136 PetscFunctionReturn(0); 1137 } 1138 1139