1 #include <../src/mat/impls/elemental/matelemimpl.h> /*I "petscmat.h" I*/ 2 3 /* 4 The variable Petsc_Elemental_keyval is used to indicate an MPI attribute that 5 is attached to a communicator, in this case the attribute is a Mat_Elemental_Grid 6 */ 7 static PetscMPIInt Petsc_Elemental_keyval = MPI_KEYVAL_INVALID; 8 9 #undef __FUNCT__ 10 #define __FUNCT__ "PetscElementalInitializePackage" 11 /*@C 12 PetscElementalInitializePackage - Initialize Elemental package 13 14 Logically Collective 15 16 Level: developer 17 18 .seealso: MATELEMENTAL, PetscElementalFinalizePackage() 19 @*/ 20 PetscErrorCode PetscElementalInitializePackage(void) 21 { 22 PetscErrorCode ierr; 23 24 PetscFunctionBegin; 25 if (elem::Initialized()) PetscFunctionReturn(0); 26 { /* We have already initialized MPI, so this song and dance is just to pass these variables (which won't be used by Elemental) through the interface that needs references */ 27 int zero = 0; 28 char **nothing = 0; 29 elem::Initialize(zero,nothing); 30 } 31 ierr = PetscRegisterFinalize(PetscElementalFinalizePackage);CHKERRQ(ierr); 32 PetscFunctionReturn(0); 33 } 34 35 #undef __FUNCT__ 36 #define __FUNCT__ "PetscElementalFinalizePackage" 37 /*@C 38 PetscElementalFinalizePackage - Finalize Elemental package 39 40 Logically Collective 41 42 Level: developer 43 44 .seealso: MATELEMENTAL, PetscElementalInitializePackage() 45 @*/ 46 PetscErrorCode PetscElementalFinalizePackage(void) 47 { 48 49 PetscFunctionBegin; 50 elem::Finalize(); 51 PetscFunctionReturn(0); 52 } 53 54 #undef __FUNCT__ 55 #define __FUNCT__ "MatView_Elemental" 56 static PetscErrorCode MatView_Elemental(Mat A,PetscViewer viewer) 57 { 58 PetscErrorCode ierr; 59 Mat_Elemental *a = (Mat_Elemental*)A->data; 60 PetscBool iascii; 61 62 PetscFunctionBegin; 63 ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 64 if (iascii) { 65 PetscViewerFormat format; 66 ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 67 if (format == PETSC_VIEWER_ASCII_INFO) { 68 /* call elemental viewing function */ 69 ierr = PetscViewerASCIIPrintf(viewer,"Elemental run parameters:\n");CHKERRQ(ierr); 70 ierr = PetscViewerASCIIPrintf(viewer," allocated entries=%d\n",(*a->emat).AllocatedMemory());CHKERRQ(ierr); 71 ierr = PetscViewerASCIIPrintf(viewer," grid height=%d, grid width=%d\n",(*a->emat).Grid().Height(),(*a->emat).Grid().Width());CHKERRQ(ierr); 72 if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 73 /* call elemental viewing function */ 74 ierr = PetscPrintf(PetscObjectComm((PetscObject)viewer),"test matview_elemental 2\n");CHKERRQ(ierr); 75 } 76 77 } else if (format == PETSC_VIEWER_DEFAULT) { 78 ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 79 elem::Print( *a->emat, "Elemental matrix (cyclic ordering)" ); 80 ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 81 if (A->factortype == MAT_FACTOR_NONE){ 82 Mat Adense; 83 ierr = PetscPrintf(PetscObjectComm((PetscObject)viewer),"Elemental matrix (explicit ordering)\n");CHKERRQ(ierr); 84 ierr = MatConvert(A,MATDENSE,MAT_INITIAL_MATRIX,&Adense);CHKERRQ(ierr); 85 ierr = MatView(Adense,viewer);CHKERRQ(ierr); 86 ierr = MatDestroy(&Adense);CHKERRQ(ierr); 87 } 88 } else SETERRQ(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Format"); 89 } else { 90 /* convert to dense format and call MatView() */ 91 Mat Adense; 92 ierr = PetscPrintf(PetscObjectComm((PetscObject)viewer),"Elemental matrix (explicit ordering)\n");CHKERRQ(ierr); 93 ierr = MatConvert(A,MATDENSE,MAT_INITIAL_MATRIX,&Adense);CHKERRQ(ierr); 94 ierr = MatView(Adense,viewer);CHKERRQ(ierr); 95 ierr = MatDestroy(&Adense);CHKERRQ(ierr); 96 } 97 PetscFunctionReturn(0); 98 } 99 100 #undef __FUNCT__ 101 #define __FUNCT__ "MatGetInfo_Elemental" 102 static PetscErrorCode MatGetInfo_Elemental(Mat A,MatInfoType flag,MatInfo *info) 103 { 104 Mat_Elemental *a = (Mat_Elemental*)A->data; 105 PetscMPIInt rank; 106 107 PetscFunctionBegin; 108 MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank); 109 110 /* if (!rank) printf(" .........MatGetInfo_Elemental ...\n"); */ 111 info->block_size = 1.0; 112 113 if (flag == MAT_LOCAL) { 114 info->nz_allocated = (double)(*a->emat).AllocatedMemory(); /* locally allocated */ 115 info->nz_used = info->nz_allocated; 116 } else if (flag == MAT_GLOBAL_MAX) { 117 //ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 118 /* see MatGetInfo_MPIAIJ() for getting global info->nz_allocated! */ 119 //SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP," MAT_GLOBAL_MAX not written yet"); 120 } else if (flag == MAT_GLOBAL_SUM) { 121 //SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP," MAT_GLOBAL_SUM not written yet"); 122 info->nz_allocated = (double)(*a->emat).AllocatedMemory(); /* locally allocated */ 123 info->nz_used = info->nz_allocated; /* assume Elemental does accurate allocation */ 124 //ierr = MPI_Allreduce(isend,irecv,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 125 //PetscPrintf(PETSC_COMM_SELF," ... [%d] locally allocated %g\n",rank,info->nz_allocated); 126 } 127 128 info->nz_unneeded = 0.0; 129 info->assemblies = (double)A->num_ass; 130 info->mallocs = 0; 131 info->memory = ((PetscObject)A)->mem; 132 info->fill_ratio_given = 0; /* determined by Elemental */ 133 info->fill_ratio_needed = 0; 134 info->factor_mallocs = 0; 135 PetscFunctionReturn(0); 136 } 137 138 #undef __FUNCT__ 139 #define __FUNCT__ "MatSetValues_Elemental" 140 static PetscErrorCode MatSetValues_Elemental(Mat A,PetscInt nr,const PetscInt *rows,PetscInt nc,const PetscInt *cols,const PetscScalar *vals,InsertMode imode) 141 { 142 PetscErrorCode ierr; 143 Mat_Elemental *a = (Mat_Elemental*)A->data; 144 PetscMPIInt rank; 145 PetscInt i,j,rrank,ridx,crank,cidx; 146 147 PetscFunctionBegin; 148 ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr); 149 150 const elem::Grid &grid = a->emat->Grid(); 151 for (i=0; i<nr; i++) { 152 PetscInt erow,ecol,elrow,elcol; 153 if (rows[i] < 0) continue; 154 P2RO(A,0,rows[i],&rrank,&ridx); 155 RO2E(A,0,rrank,ridx,&erow); 156 if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Incorrect row translation"); 157 for (j=0; j<nc; j++) { 158 if (cols[j] < 0) continue; 159 P2RO(A,1,cols[j],&crank,&cidx); 160 RO2E(A,1,crank,cidx,&ecol); 161 if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Incorrect col translation"); 162 if (erow % grid.MCSize() != grid.MCRank() || ecol % grid.MRSize() != grid.MRRank()){ /* off-proc entry */ 163 if (imode != ADD_VALUES) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only ADD_VALUES to off-processor entry is supported"); 164 /* PetscPrintf(PETSC_COMM_SELF,"[%D] add off-proc entry (%D,%D, %g) (%D %D)\n",rank,rows[i],cols[j],*(vals+i*nc),erow,ecol); */ 165 a->esubmat->Set(0,0, (PetscElemScalar)vals[i*nc+j]); 166 a->interface->Axpy(1.0,*(a->esubmat),erow,ecol); 167 continue; 168 } 169 elrow = erow / grid.MCSize(); 170 elcol = ecol / grid.MRSize(); 171 switch (imode) { 172 case INSERT_VALUES: a->emat->SetLocal(elrow,elcol,(PetscElemScalar)vals[i*nc+j]); break; 173 case ADD_VALUES: a->emat->UpdateLocal(elrow,elcol,(PetscElemScalar)vals[i*nc+j]); break; 174 default: SETERRQ1(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for InsertMode %d",(int)imode); 175 } 176 } 177 } 178 PetscFunctionReturn(0); 179 } 180 181 #undef __FUNCT__ 182 #define __FUNCT__ "MatMult_Elemental" 183 static PetscErrorCode MatMult_Elemental(Mat A,Vec X,Vec Y) 184 { 185 Mat_Elemental *a = (Mat_Elemental*)A->data; 186 PetscErrorCode ierr; 187 const PetscElemScalar *x; 188 PetscElemScalar *y; 189 PetscElemScalar one = 1,zero = 0; 190 191 PetscFunctionBegin; 192 ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 193 ierr = VecGetArray(Y,(PetscScalar **)&y);CHKERRQ(ierr); 194 { /* Scoping so that constructor is called before pointer is returned */ 195 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->cmap->N,1,0,0,x,A->cmap->n,*a->grid); 196 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ye(A->rmap->N,1,0,0,y,A->rmap->n,*a->grid); 197 elem::Gemv(elem::NORMAL,one,*a->emat,xe,zero,ye); 198 } 199 ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 200 ierr = VecRestoreArray(Y,(PetscScalar **)&y);CHKERRQ(ierr); 201 PetscFunctionReturn(0); 202 } 203 204 #undef __FUNCT__ 205 #define __FUNCT__ "MatMultTranspose_Elemental" 206 static PetscErrorCode MatMultTranspose_Elemental(Mat A,Vec X,Vec Y) 207 { 208 Mat_Elemental *a = (Mat_Elemental*)A->data; 209 PetscErrorCode ierr; 210 const PetscElemScalar *x; 211 PetscElemScalar *y; 212 PetscElemScalar one = 1,zero = 0; 213 214 PetscFunctionBegin; 215 ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 216 ierr = VecGetArray(Y,(PetscScalar **)&y);CHKERRQ(ierr); 217 { /* Scoping so that constructor is called before pointer is returned */ 218 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,0,x,A->rmap->n,*a->grid); 219 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ye(A->cmap->N,1,0,0,y,A->cmap->n,*a->grid); 220 elem::Gemv(elem::TRANSPOSE,one,*a->emat,xe,zero,ye); 221 } 222 ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 223 ierr = VecRestoreArray(Y,(PetscScalar **)&y);CHKERRQ(ierr); 224 PetscFunctionReturn(0); 225 } 226 227 #undef __FUNCT__ 228 #define __FUNCT__ "MatMultAdd_Elemental" 229 static PetscErrorCode MatMultAdd_Elemental(Mat A,Vec X,Vec Y,Vec Z) 230 { 231 Mat_Elemental *a = (Mat_Elemental*)A->data; 232 PetscErrorCode ierr; 233 const PetscElemScalar *x; 234 PetscElemScalar *z; 235 PetscElemScalar one = 1; 236 237 PetscFunctionBegin; 238 if (Y != Z) {ierr = VecCopy(Y,Z);CHKERRQ(ierr);} 239 ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 240 ierr = VecGetArray(Z,(PetscScalar **)&z);CHKERRQ(ierr); 241 { /* Scoping so that constructor is called before pointer is returned */ 242 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->cmap->N,1,0,0,x,A->cmap->n,*a->grid); 243 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ze(A->rmap->N,1,0,0,z,A->rmap->n,*a->grid); 244 elem::Gemv(elem::NORMAL,one,*a->emat,xe,one,ze); 245 } 246 ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 247 ierr = VecRestoreArray(Z,(PetscScalar **)&z);CHKERRQ(ierr); 248 PetscFunctionReturn(0); 249 } 250 251 #undef __FUNCT__ 252 #define __FUNCT__ "MatMultTransposeAdd_Elemental" 253 static PetscErrorCode MatMultTransposeAdd_Elemental(Mat A,Vec X,Vec Y,Vec Z) 254 { 255 Mat_Elemental *a = (Mat_Elemental*)A->data; 256 PetscErrorCode ierr; 257 const PetscElemScalar *x; 258 PetscElemScalar *z; 259 PetscElemScalar one = 1; 260 261 PetscFunctionBegin; 262 if (Y != Z) {ierr = VecCopy(Y,Z);CHKERRQ(ierr);} 263 ierr = VecGetArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 264 ierr = VecGetArray(Z,(PetscScalar **)&z);CHKERRQ(ierr); 265 { /* Scoping so that constructor is called before pointer is returned */ 266 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,0,x,A->rmap->n,*a->grid); 267 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> ze(A->cmap->N,1,0,0,z,A->cmap->n,*a->grid); 268 elem::Gemv(elem::TRANSPOSE,one,*a->emat,xe,one,ze); 269 } 270 ierr = VecRestoreArrayRead(X,(const PetscScalar **)&x);CHKERRQ(ierr); 271 ierr = VecRestoreArray(Z,(PetscScalar **)&z);CHKERRQ(ierr); 272 PetscFunctionReturn(0); 273 } 274 275 #undef __FUNCT__ 276 #define __FUNCT__ "MatMatMultNumeric_Elemental" 277 static PetscErrorCode MatMatMultNumeric_Elemental(Mat A,Mat B,Mat C) 278 { 279 Mat_Elemental *a = (Mat_Elemental*)A->data; 280 Mat_Elemental *b = (Mat_Elemental*)B->data; 281 Mat_Elemental *c = (Mat_Elemental*)C->data; 282 PetscElemScalar one = 1,zero = 0; 283 284 PetscFunctionBegin; 285 { /* Scoping so that constructor is called before pointer is returned */ 286 elem::Gemm(elem::NORMAL,elem::NORMAL,one,*a->emat,*b->emat,zero,*c->emat); 287 } 288 C->assembled = PETSC_TRUE; 289 PetscFunctionReturn(0); 290 } 291 292 #undef __FUNCT__ 293 #define __FUNCT__ "MatMatMultSymbolic_Elemental" 294 static PetscErrorCode MatMatMultSymbolic_Elemental(Mat A,Mat B,PetscReal fill,Mat *C) 295 { 296 PetscErrorCode ierr; 297 Mat Ce; 298 MPI_Comm comm; 299 300 PetscFunctionBegin; 301 ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 302 ierr = MatCreate(comm,&Ce);CHKERRQ(ierr); 303 ierr = MatSetSizes(Ce,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 304 ierr = MatSetType(Ce,MATELEMENTAL);CHKERRQ(ierr); 305 ierr = MatSetUp(Ce);CHKERRQ(ierr); 306 *C = Ce; 307 PetscFunctionReturn(0); 308 } 309 310 #undef __FUNCT__ 311 #define __FUNCT__ "MatMatMult_Elemental" 312 static PetscErrorCode MatMatMult_Elemental(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 313 { 314 PetscErrorCode ierr; 315 316 PetscFunctionBegin; 317 if (scall == MAT_INITIAL_MATRIX){ 318 ierr = PetscLogEventBegin(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 319 ierr = MatMatMultSymbolic_Elemental(A,B,1.0,C);CHKERRQ(ierr); 320 ierr = PetscLogEventEnd(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 321 } 322 ierr = PetscLogEventBegin(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 323 ierr = MatMatMultNumeric_Elemental(A,B,*C);CHKERRQ(ierr); 324 ierr = PetscLogEventEnd(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 325 PetscFunctionReturn(0); 326 } 327 328 #undef __FUNCT__ 329 #define __FUNCT__ "MatMatTransposeMultNumeric_Elemental" 330 static PetscErrorCode MatMatTransposeMultNumeric_Elemental(Mat A,Mat B,Mat C) 331 { 332 Mat_Elemental *a = (Mat_Elemental*)A->data; 333 Mat_Elemental *b = (Mat_Elemental*)B->data; 334 Mat_Elemental *c = (Mat_Elemental*)C->data; 335 PetscElemScalar one = 1,zero = 0; 336 337 PetscFunctionBegin; 338 { /* Scoping so that constructor is called before pointer is returned */ 339 elem::Gemm(elem::NORMAL,elem::TRANSPOSE,one,*a->emat,*b->emat,zero,*c->emat); 340 } 341 C->assembled = PETSC_TRUE; 342 PetscFunctionReturn(0); 343 } 344 345 #undef __FUNCT__ 346 #define __FUNCT__ "MatMatTransposeMultSymbolic_Elemental" 347 static PetscErrorCode MatMatTransposeMultSymbolic_Elemental(Mat A,Mat B,PetscReal fill,Mat *C) 348 { 349 PetscErrorCode ierr; 350 Mat Ce; 351 MPI_Comm comm; 352 353 PetscFunctionBegin; 354 ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 355 ierr = MatCreate(comm,&Ce);CHKERRQ(ierr); 356 ierr = MatSetSizes(Ce,A->rmap->n,B->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 357 ierr = MatSetType(Ce,MATELEMENTAL);CHKERRQ(ierr); 358 ierr = MatSetUp(Ce);CHKERRQ(ierr); 359 *C = Ce; 360 PetscFunctionReturn(0); 361 } 362 363 #undef __FUNCT__ 364 #define __FUNCT__ "MatMatTransposeMult_Elemental" 365 static PetscErrorCode MatMatTransposeMult_Elemental(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 366 { 367 PetscErrorCode ierr; 368 369 PetscFunctionBegin; 370 if (scall == MAT_INITIAL_MATRIX){ 371 ierr = PetscLogEventBegin(MAT_MatTransposeMultSymbolic,A,B,0,0);CHKERRQ(ierr); 372 ierr = MatMatMultSymbolic_Elemental(A,B,1.0,C);CHKERRQ(ierr); 373 ierr = PetscLogEventEnd(MAT_MatTransposeMultSymbolic,A,B,0,0);CHKERRQ(ierr); 374 } 375 ierr = PetscLogEventBegin(MAT_MatTransposeMultNumeric,A,B,0,0);CHKERRQ(ierr); 376 ierr = MatMatTransposeMultNumeric_Elemental(A,B,*C);CHKERRQ(ierr); 377 ierr = PetscLogEventEnd(MAT_MatTransposeMultNumeric,A,B,0,0);CHKERRQ(ierr); 378 PetscFunctionReturn(0); 379 } 380 381 #undef __FUNCT__ 382 #define __FUNCT__ "MatGetDiagonal_Elemental" 383 static PetscErrorCode MatGetDiagonal_Elemental(Mat A,Vec D) 384 { 385 PetscInt i,nrows,ncols,nD,rrank,ridx,crank,cidx; 386 Mat_Elemental *a = (Mat_Elemental*)A->data; 387 PetscErrorCode ierr; 388 PetscElemScalar v; 389 MPI_Comm comm; 390 391 PetscFunctionBegin; 392 ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 393 ierr = MatGetSize(A,&nrows,&ncols);CHKERRQ(ierr); 394 nD = nrows>ncols ? ncols : nrows; 395 for (i=0; i<nD; i++) { 396 PetscInt erow,ecol; 397 P2RO(A,0,i,&rrank,&ridx); 398 RO2E(A,0,rrank,ridx,&erow); 399 if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect row translation"); 400 P2RO(A,1,i,&crank,&cidx); 401 RO2E(A,1,crank,cidx,&ecol); 402 if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect col translation"); 403 v = a->emat->Get(erow,ecol); 404 ierr = VecSetValues(D,1,&i,(PetscScalar*)&v,INSERT_VALUES);CHKERRQ(ierr); 405 } 406 ierr = VecAssemblyBegin(D);CHKERRQ(ierr); 407 ierr = VecAssemblyEnd(D);CHKERRQ(ierr); 408 PetscFunctionReturn(0); 409 } 410 411 #undef __FUNCT__ 412 #define __FUNCT__ "MatDiagonalScale_Elemental" 413 static PetscErrorCode MatDiagonalScale_Elemental(Mat X,Vec L,Vec R) 414 { 415 Mat_Elemental *x = (Mat_Elemental*)X->data; 416 const PetscElemScalar *d; 417 PetscErrorCode ierr; 418 419 PetscFunctionBegin; 420 if (R) { 421 ierr = VecGetArrayRead(R,(const PetscScalar **)&d);CHKERRQ(ierr); 422 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> de(X->cmap->N,1,0,0,d,X->cmap->n,*x->grid); 423 elem::DiagonalScale(elem::RIGHT,elem::NORMAL,de,*x->emat); 424 ierr = VecRestoreArrayRead(R,(const PetscScalar **)&d);CHKERRQ(ierr); 425 } 426 if (L) { 427 ierr = VecGetArrayRead(L,(const PetscScalar **)&d);CHKERRQ(ierr); 428 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> de(X->rmap->N,1,0,0,d,X->rmap->n,*x->grid); 429 elem::DiagonalScale(elem::LEFT,elem::NORMAL,de,*x->emat); 430 ierr = VecRestoreArrayRead(L,(const PetscScalar **)&d);CHKERRQ(ierr); 431 } 432 PetscFunctionReturn(0); 433 } 434 435 #undef __FUNCT__ 436 #define __FUNCT__ "MatScale_Elemental" 437 static PetscErrorCode MatScale_Elemental(Mat X,PetscScalar a) 438 { 439 Mat_Elemental *x = (Mat_Elemental*)X->data; 440 441 PetscFunctionBegin; 442 elem::Scal((PetscElemScalar)a,*x->emat); 443 PetscFunctionReturn(0); 444 } 445 446 #undef __FUNCT__ 447 #define __FUNCT__ "MatAXPY_Elemental" 448 static PetscErrorCode MatAXPY_Elemental(Mat Y,PetscScalar a,Mat X,MatStructure str) 449 { 450 Mat_Elemental *x = (Mat_Elemental*)X->data; 451 Mat_Elemental *y = (Mat_Elemental*)Y->data; 452 453 PetscFunctionBegin; 454 elem::Axpy((PetscElemScalar)a,*x->emat,*y->emat); 455 PetscFunctionReturn(0); 456 } 457 458 #undef __FUNCT__ 459 #define __FUNCT__ "MatCopy_Elemental" 460 static PetscErrorCode MatCopy_Elemental(Mat A,Mat B,MatStructure str) 461 { 462 Mat_Elemental *a=(Mat_Elemental*)A->data; 463 Mat_Elemental *b=(Mat_Elemental*)B->data; 464 465 PetscFunctionBegin; 466 elem::Copy(*a->emat,*b->emat); 467 PetscFunctionReturn(0); 468 } 469 470 #undef __FUNCT__ 471 #define __FUNCT__ "MatDuplicate_Elemental" 472 static PetscErrorCode MatDuplicate_Elemental(Mat A,MatDuplicateOption op,Mat *B) 473 { 474 Mat Be; 475 MPI_Comm comm; 476 Mat_Elemental *a=(Mat_Elemental*)A->data; 477 PetscErrorCode ierr; 478 479 PetscFunctionBegin; 480 ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 481 ierr = MatCreate(comm,&Be);CHKERRQ(ierr); 482 ierr = MatSetSizes(Be,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 483 ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr); 484 ierr = MatSetUp(Be);CHKERRQ(ierr); 485 *B = Be; 486 if (op == MAT_COPY_VALUES) { 487 Mat_Elemental *b=(Mat_Elemental*)Be->data; 488 elem::Copy(*a->emat,*b->emat); 489 } 490 Be->assembled = PETSC_TRUE; 491 PetscFunctionReturn(0); 492 } 493 494 #undef __FUNCT__ 495 #define __FUNCT__ "MatTranspose_Elemental" 496 static PetscErrorCode MatTranspose_Elemental(Mat A,MatReuse reuse,Mat *B) 497 { 498 Mat Be; 499 PetscErrorCode ierr; 500 MPI_Comm comm; 501 Mat_Elemental *a = (Mat_Elemental*)A->data, *b; 502 503 PetscFunctionBegin; 504 ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 505 /* Only out-of-place supported */ 506 if (reuse == MAT_INITIAL_MATRIX){ 507 ierr = MatCreate(comm,&Be);CHKERRQ(ierr); 508 ierr = MatSetSizes(Be,A->cmap->n,A->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 509 ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr); 510 ierr = MatSetUp(Be);CHKERRQ(ierr); 511 *B = Be; 512 } 513 b = (Mat_Elemental*)Be->data; 514 elem::Transpose(*a->emat,*b->emat); 515 Be->assembled = PETSC_TRUE; 516 PetscFunctionReturn(0); 517 } 518 519 #undef __FUNCT__ 520 #define __FUNCT__ "MatConjugate_Elemental" 521 static PetscErrorCode MatConjugate_Elemental(Mat A) 522 { 523 Mat_Elemental *a = (Mat_Elemental*)A->data; 524 525 PetscFunctionBegin; 526 elem::Conjugate(*a->emat); 527 PetscFunctionReturn(0); 528 } 529 530 #undef __FUNCT__ 531 #define __FUNCT__ "MatHermitianTranspose_Elemental" 532 static PetscErrorCode MatHermitianTranspose_Elemental(Mat A,MatReuse reuse,Mat *B) 533 { 534 Mat Be; 535 PetscErrorCode ierr; 536 MPI_Comm comm; 537 Mat_Elemental *a = (Mat_Elemental*)A->data, *b; 538 539 PetscFunctionBegin; 540 ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 541 /* Only out-of-place supported */ 542 if (reuse == MAT_INITIAL_MATRIX){ 543 ierr = MatCreate(comm,&Be);CHKERRQ(ierr); 544 ierr = MatSetSizes(Be,A->cmap->n,A->rmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 545 ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr); 546 ierr = MatSetUp(Be);CHKERRQ(ierr); 547 *B = Be; 548 } 549 b = (Mat_Elemental*)Be->data; 550 elem::Adjoint(*a->emat,*b->emat); 551 Be->assembled = PETSC_TRUE; 552 PetscFunctionReturn(0); 553 } 554 555 #undef __FUNCT__ 556 #define __FUNCT__ "MatSolve_Elemental" 557 static PetscErrorCode MatSolve_Elemental(Mat A,Vec B,Vec X) 558 { 559 Mat_Elemental *a = (Mat_Elemental*)A->data; 560 PetscErrorCode ierr; 561 PetscElemScalar *x; 562 563 PetscFunctionBegin; 564 ierr = VecCopy(B,X);CHKERRQ(ierr); 565 ierr = VecGetArray(X,(PetscScalar **)&x);CHKERRQ(ierr); 566 elem::DistMatrix<PetscElemScalar,elem::VC,elem::STAR> xe(A->rmap->N,1,0,0,x,A->rmap->n,*a->grid); 567 elem::DistMatrix<PetscElemScalar,elem::MC,elem::MR> xer = xe; 568 switch (A->factortype) { 569 case MAT_FACTOR_LU: 570 if ((*a->pivot).AllocatedMemory()) { 571 elem::lu::SolveAfter(elem::NORMAL,*a->emat,*a->pivot,xer); 572 elem::Copy(xer,xe); 573 } else { 574 elem::lu::SolveAfter(elem::NORMAL,*a->emat,xer); 575 elem::Copy(xer,xe); 576 } 577 break; 578 case MAT_FACTOR_CHOLESKY: 579 elem::cholesky::SolveAfter(elem::UPPER,elem::NORMAL,*a->emat,xer); 580 elem::Copy(xer,xe); 581 break; 582 default: 583 SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unfactored Matrix or Unsupported MatFactorType"); 584 break; 585 } 586 ierr = VecRestoreArray(X,(PetscScalar **)&x);CHKERRQ(ierr); 587 PetscFunctionReturn(0); 588 } 589 590 #undef __FUNCT__ 591 #define __FUNCT__ "MatSolveAdd_Elemental" 592 static PetscErrorCode MatSolveAdd_Elemental(Mat A,Vec B,Vec Y,Vec X) 593 { 594 PetscErrorCode ierr; 595 596 PetscFunctionBegin; 597 ierr = MatSolve_Elemental(A,B,X);CHKERRQ(ierr); 598 ierr = VecAXPY(X,1,Y);CHKERRQ(ierr); 599 PetscFunctionReturn(0); 600 } 601 602 #undef __FUNCT__ 603 #define __FUNCT__ "MatMatSolve_Elemental" 604 static PetscErrorCode MatMatSolve_Elemental(Mat A,Mat B,Mat X) 605 { 606 Mat_Elemental *a=(Mat_Elemental*)A->data; 607 Mat_Elemental *b=(Mat_Elemental*)B->data; 608 Mat_Elemental *x=(Mat_Elemental*)X->data; 609 610 PetscFunctionBegin; 611 elem::Copy(*b->emat,*x->emat); 612 switch (A->factortype) { 613 case MAT_FACTOR_LU: 614 if ((*a->pivot).AllocatedMemory()) { 615 elem::lu::SolveAfter(elem::NORMAL,*a->emat,*a->pivot,*x->emat); 616 } else { 617 elem::lu::SolveAfter(elem::NORMAL,*a->emat,*x->emat); 618 } 619 break; 620 case MAT_FACTOR_CHOLESKY: 621 elem::cholesky::SolveAfter(elem::UPPER,elem::NORMAL,*a->emat,*x->emat); 622 break; 623 default: 624 SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unfactored Matrix or Unsupported MatFactorType"); 625 break; 626 } 627 PetscFunctionReturn(0); 628 } 629 630 #undef __FUNCT__ 631 #define __FUNCT__ "MatLUFactor_Elemental" 632 static PetscErrorCode MatLUFactor_Elemental(Mat A,IS row,IS col,const MatFactorInfo *info) 633 { 634 Mat_Elemental *a = (Mat_Elemental*)A->data; 635 636 PetscFunctionBegin; 637 if (info->dtcol){ 638 elem::LU(*a->emat,*a->pivot); 639 } else { 640 elem::LU(*a->emat); 641 } 642 A->factortype = MAT_FACTOR_LU; 643 A->assembled = PETSC_TRUE; 644 PetscFunctionReturn(0); 645 } 646 647 #undef __FUNCT__ 648 #define __FUNCT__ "MatLUFactorNumeric_Elemental" 649 static PetscErrorCode MatLUFactorNumeric_Elemental(Mat F,Mat A,const MatFactorInfo *info) 650 { 651 PetscErrorCode ierr; 652 653 PetscFunctionBegin; 654 ierr = MatCopy(A,F,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 655 ierr = MatLUFactor_Elemental(F,0,0,info);CHKERRQ(ierr); 656 PetscFunctionReturn(0); 657 } 658 659 #undef __FUNCT__ 660 #define __FUNCT__ "MatLUFactorSymbolic_Elemental" 661 static PetscErrorCode MatLUFactorSymbolic_Elemental(Mat F,Mat A,IS r,IS c,const MatFactorInfo *info) 662 { 663 PetscFunctionBegin; 664 /* F is create and allocated by MatGetFactor_elemental_petsc(), skip this routine. */ 665 PetscFunctionReturn(0); 666 } 667 668 #undef __FUNCT__ 669 #define __FUNCT__ "MatCholeskyFactor_Elemental" 670 static PetscErrorCode MatCholeskyFactor_Elemental(Mat A,IS perm,const MatFactorInfo *info) 671 { 672 Mat_Elemental *a = (Mat_Elemental*)A->data; 673 elem::DistMatrix<PetscElemScalar,elem::MC,elem::STAR> d; 674 675 PetscFunctionBegin; 676 elem::Cholesky(elem::UPPER,*a->emat); 677 A->factortype = MAT_FACTOR_CHOLESKY; 678 A->assembled = PETSC_TRUE; 679 PetscFunctionReturn(0); 680 } 681 682 #undef __FUNCT__ 683 #define __FUNCT__ "MatCholeskyFactorNumeric_Elemental" 684 static PetscErrorCode MatCholeskyFactorNumeric_Elemental(Mat F,Mat A,const MatFactorInfo *info) 685 { 686 PetscErrorCode ierr; 687 688 PetscFunctionBegin; 689 ierr = MatCopy(A,F,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 690 ierr = MatCholeskyFactor_Elemental(F,0,info);CHKERRQ(ierr); 691 PetscFunctionReturn(0); 692 } 693 694 #undef __FUNCT__ 695 #define __FUNCT__ "MatCholeskyFactorSymbolic_Elemental" 696 static PetscErrorCode MatCholeskyFactorSymbolic_Elemental(Mat F,Mat A,IS perm,const MatFactorInfo *info) 697 { 698 PetscFunctionBegin; 699 /* F is create and allocated by MatGetFactor_elemental_petsc(), skip this routine. */ 700 PetscFunctionReturn(0); 701 } 702 703 #undef __FUNCT__ 704 #define __FUNCT__ "MatFactorGetSolverPackage_elemental_elemental" 705 PetscErrorCode MatFactorGetSolverPackage_elemental_elemental(Mat A,const MatSolverPackage *type) 706 { 707 PetscFunctionBegin; 708 *type = MATSOLVERELEMENTAL; 709 PetscFunctionReturn(0); 710 } 711 712 #undef __FUNCT__ 713 #define __FUNCT__ "MatGetFactor_elemental_elemental" 714 static PetscErrorCode MatGetFactor_elemental_elemental(Mat A,MatFactorType ftype,Mat *F) 715 { 716 Mat B; 717 PetscErrorCode ierr; 718 719 PetscFunctionBegin; 720 /* Create the factorization matrix */ 721 ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 722 ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 723 ierr = MatSetType(B,MATELEMENTAL);CHKERRQ(ierr); 724 ierr = MatSetUp(B);CHKERRQ(ierr); 725 B->factortype = ftype; 726 ierr = PetscObjectComposeFunction((PetscObject)B,"MatFactorGetSolverPackage_C",MatFactorGetSolverPackage_elemental_elemental);CHKERRQ(ierr); 727 *F = B; 728 PetscFunctionReturn(0); 729 } 730 731 #undef __FUNCT__ 732 #define __FUNCT__ "MatNorm_Elemental" 733 static PetscErrorCode MatNorm_Elemental(Mat A,NormType type,PetscReal *nrm) 734 { 735 Mat_Elemental *a=(Mat_Elemental*)A->data; 736 737 PetscFunctionBegin; 738 switch (type){ 739 case NORM_1: 740 *nrm = elem::OneNorm(*a->emat); 741 break; 742 case NORM_FROBENIUS: 743 *nrm = elem::FrobeniusNorm(*a->emat); 744 break; 745 case NORM_INFINITY: 746 *nrm = elem::InfinityNorm(*a->emat); 747 break; 748 default: 749 printf("Error: unsupported norm type!\n"); 750 } 751 PetscFunctionReturn(0); 752 } 753 754 #undef __FUNCT__ 755 #define __FUNCT__ "MatZeroEntries_Elemental" 756 static PetscErrorCode MatZeroEntries_Elemental(Mat A) 757 { 758 Mat_Elemental *a=(Mat_Elemental*)A->data; 759 760 PetscFunctionBegin; 761 elem::Zero(*a->emat); 762 PetscFunctionReturn(0); 763 } 764 765 #undef __FUNCT__ 766 #define __FUNCT__ "MatGetOwnershipIS_Elemental" 767 static PetscErrorCode MatGetOwnershipIS_Elemental(Mat A,IS *rows,IS *cols) 768 { 769 Mat_Elemental *a = (Mat_Elemental*)A->data; 770 PetscErrorCode ierr; 771 PetscInt i,m,shift,stride,*idx; 772 773 PetscFunctionBegin; 774 if (rows) { 775 m = a->emat->LocalHeight(); 776 shift = a->emat->ColShift(); 777 stride = a->emat->ColStride(); 778 ierr = PetscMalloc1(m,&idx);CHKERRQ(ierr); 779 for (i=0; i<m; i++) { 780 PetscInt rank,offset; 781 E2RO(A,0,shift+i*stride,&rank,&offset); 782 RO2P(A,0,rank,offset,&idx[i]); 783 } 784 ierr = ISCreateGeneral(PETSC_COMM_SELF,m,idx,PETSC_OWN_POINTER,rows);CHKERRQ(ierr); 785 } 786 if (cols) { 787 m = a->emat->LocalWidth(); 788 shift = a->emat->RowShift(); 789 stride = a->emat->RowStride(); 790 ierr = PetscMalloc1(m,&idx);CHKERRQ(ierr); 791 for (i=0; i<m; i++) { 792 PetscInt rank,offset; 793 E2RO(A,1,shift+i*stride,&rank,&offset); 794 RO2P(A,1,rank,offset,&idx[i]); 795 } 796 ierr = ISCreateGeneral(PETSC_COMM_SELF,m,idx,PETSC_OWN_POINTER,cols);CHKERRQ(ierr); 797 } 798 PetscFunctionReturn(0); 799 } 800 801 #undef __FUNCT__ 802 #define __FUNCT__ "MatConvert_Elemental_Dense" 803 static PetscErrorCode MatConvert_Elemental_Dense(Mat A,MatType newtype,MatReuse reuse,Mat *B) 804 { 805 Mat Bmpi; 806 Mat_Elemental *a = (Mat_Elemental*)A->data; 807 MPI_Comm comm; 808 PetscErrorCode ierr; 809 PetscInt rrank,ridx,crank,cidx,nrows,ncols,i,j; 810 PetscElemScalar v; 811 PetscBool s1,s2,s3; 812 813 PetscFunctionBegin; 814 ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 815 ierr = PetscStrcmp(newtype,MATDENSE,&s1);CHKERRQ(ierr); 816 ierr = PetscStrcmp(newtype,MATSEQDENSE,&s2);CHKERRQ(ierr); 817 ierr = PetscStrcmp(newtype,MATMPIDENSE,&s3);CHKERRQ(ierr); 818 if (!s1 && !s2 && !s3) SETERRQ(comm,PETSC_ERR_SUP,"Unsupported New MatType: must be MATDENSE, MATSEQDENSE or MATMPIDENSE"); 819 ierr = MatCreate(comm,&Bmpi);CHKERRQ(ierr); 820 ierr = MatSetSizes(Bmpi,A->rmap->n,A->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 821 ierr = MatSetType(Bmpi,MATDENSE);CHKERRQ(ierr); 822 ierr = MatSetUp(Bmpi);CHKERRQ(ierr); 823 ierr = MatGetSize(A,&nrows,&ncols);CHKERRQ(ierr); 824 for (i=0; i<nrows; i++) { 825 PetscInt erow,ecol; 826 P2RO(A,0,i,&rrank,&ridx); 827 RO2E(A,0,rrank,ridx,&erow); 828 if (rrank < 0 || ridx < 0 || erow < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect row translation"); 829 for (j=0; j<ncols; j++) { 830 P2RO(A,1,j,&crank,&cidx); 831 RO2E(A,1,crank,cidx,&ecol); 832 if (crank < 0 || cidx < 0 || ecol < 0) SETERRQ(comm,PETSC_ERR_PLIB,"Incorrect col translation"); 833 v = a->emat->Get(erow,ecol); 834 ierr = MatSetValues(Bmpi,1,&i,1,&j,(PetscScalar *)&v,INSERT_VALUES);CHKERRQ(ierr); 835 } 836 } 837 ierr = MatAssemblyBegin(Bmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 838 ierr = MatAssemblyEnd(Bmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 839 if (reuse == MAT_REUSE_MATRIX) { 840 ierr = MatHeaderReplace(A,Bmpi);CHKERRQ(ierr); 841 } else { 842 *B = Bmpi; 843 } 844 PetscFunctionReturn(0); 845 } 846 847 #undef __FUNCT__ 848 #define __FUNCT__ "MatDestroy_Elemental" 849 static PetscErrorCode MatDestroy_Elemental(Mat A) 850 { 851 Mat_Elemental *a = (Mat_Elemental*)A->data; 852 PetscErrorCode ierr; 853 Mat_Elemental_Grid *commgrid; 854 PetscBool flg; 855 MPI_Comm icomm; 856 857 PetscFunctionBegin; 858 a->interface->Detach(); 859 delete a->interface; 860 delete a->esubmat; 861 delete a->emat; 862 863 elem::mpi::Comm cxxcomm(PetscObjectComm((PetscObject)A)); 864 ierr = PetscCommDuplicate(cxxcomm,&icomm,NULL);CHKERRQ(ierr); 865 ierr = MPI_Attr_get(icomm,Petsc_Elemental_keyval,(void**)&commgrid,(int*)&flg);CHKERRQ(ierr); 866 if (--commgrid->grid_refct == 0) { 867 delete commgrid->grid; 868 ierr = PetscFree(commgrid);CHKERRQ(ierr); 869 } 870 ierr = PetscCommDestroy(&icomm);CHKERRQ(ierr); 871 ierr = PetscObjectComposeFunction((PetscObject)A,"MatGetOwnershipIS_C",NULL);CHKERRQ(ierr); 872 ierr = PetscObjectComposeFunction((PetscObject)A,"MatGetFactor_petsc_C",NULL);CHKERRQ(ierr); 873 ierr = PetscObjectComposeFunction((PetscObject)A,"MatFactorGetSolverPackage_C",NULL);CHKERRQ(ierr); 874 ierr = PetscFree(A->data);CHKERRQ(ierr); 875 PetscFunctionReturn(0); 876 } 877 878 #undef __FUNCT__ 879 #define __FUNCT__ "MatSetUp_Elemental" 880 PetscErrorCode MatSetUp_Elemental(Mat A) 881 { 882 Mat_Elemental *a = (Mat_Elemental*)A->data; 883 PetscErrorCode ierr; 884 PetscMPIInt rsize,csize; 885 886 PetscFunctionBegin; 887 ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 888 ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 889 890 a->emat->Resize(A->rmap->N,A->cmap->N);CHKERRQ(ierr); 891 elem::Zero(*a->emat); 892 893 ierr = MPI_Comm_size(A->rmap->comm,&rsize);CHKERRQ(ierr); 894 ierr = MPI_Comm_size(A->cmap->comm,&csize);CHKERRQ(ierr); 895 if (csize != rsize) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_INCOMP,"Cannot use row and column communicators of different sizes"); 896 a->commsize = rsize; 897 a->mr[0] = A->rmap->N % rsize; if (!a->mr[0]) a->mr[0] = rsize; 898 a->mr[1] = A->cmap->N % csize; if (!a->mr[1]) a->mr[1] = csize; 899 a->m[0] = A->rmap->N / rsize + (a->mr[0] != rsize); 900 a->m[1] = A->cmap->N / csize + (a->mr[1] != csize); 901 PetscFunctionReturn(0); 902 } 903 904 #undef __FUNCT__ 905 #define __FUNCT__ "MatAssemblyBegin_Elemental" 906 PetscErrorCode MatAssemblyBegin_Elemental(Mat A, MatAssemblyType type) 907 { 908 Mat_Elemental *a = (Mat_Elemental*)A->data; 909 910 PetscFunctionBegin; 911 a->interface->Detach(); 912 a->interface->Attach(elem::LOCAL_TO_GLOBAL,*(a->emat)); 913 PetscFunctionReturn(0); 914 } 915 916 #undef __FUNCT__ 917 #define __FUNCT__ "MatAssemblyEnd_Elemental" 918 PetscErrorCode MatAssemblyEnd_Elemental(Mat A, MatAssemblyType type) 919 { 920 PetscFunctionBegin; 921 /* Currently does nothing */ 922 PetscFunctionReturn(0); 923 } 924 925 /* -------------------------------------------------------------------*/ 926 static struct _MatOps MatOps_Values = { 927 MatSetValues_Elemental, 928 0, 929 0, 930 MatMult_Elemental, 931 /* 4*/ MatMultAdd_Elemental, 932 MatMultTranspose_Elemental, 933 MatMultTransposeAdd_Elemental, 934 MatSolve_Elemental, 935 MatSolveAdd_Elemental, 936 0, //MatSolveTranspose_Elemental, 937 /*10*/ 0, //MatSolveTransposeAdd_Elemental, 938 MatLUFactor_Elemental, 939 MatCholeskyFactor_Elemental, 940 0, 941 MatTranspose_Elemental, 942 /*15*/ MatGetInfo_Elemental, 943 0, 944 MatGetDiagonal_Elemental, 945 MatDiagonalScale_Elemental, 946 MatNorm_Elemental, 947 /*20*/ MatAssemblyBegin_Elemental, 948 MatAssemblyEnd_Elemental, 949 0, //MatSetOption_Elemental, 950 MatZeroEntries_Elemental, 951 /*24*/ 0, 952 MatLUFactorSymbolic_Elemental, 953 MatLUFactorNumeric_Elemental, 954 MatCholeskyFactorSymbolic_Elemental, 955 MatCholeskyFactorNumeric_Elemental, 956 /*29*/ MatSetUp_Elemental, 957 0, 958 0, 959 0, 960 0, 961 /*34*/ MatDuplicate_Elemental, 962 0, 963 0, 964 0, 965 0, 966 /*39*/ MatAXPY_Elemental, 967 0, 968 0, 969 0, 970 MatCopy_Elemental, 971 /*44*/ 0, 972 MatScale_Elemental, 973 0, 974 0, 975 0, 976 /*49*/ 0, 977 0, 978 0, 979 0, 980 0, 981 /*54*/ 0, 982 0, 983 0, 984 0, 985 0, 986 /*59*/ 0, 987 MatDestroy_Elemental, 988 MatView_Elemental, 989 0, 990 0, 991 /*64*/ 0, 992 0, 993 0, 994 0, 995 0, 996 /*69*/ 0, 997 0, 998 MatConvert_Elemental_Dense, 999 0, 1000 0, 1001 /*74*/ 0, 1002 0, 1003 0, 1004 0, 1005 0, 1006 /*79*/ 0, 1007 0, 1008 0, 1009 0, 1010 0, 1011 /*84*/ 0, 1012 0, 1013 0, 1014 0, 1015 0, 1016 /*89*/ MatMatMult_Elemental, 1017 MatMatMultSymbolic_Elemental, 1018 MatMatMultNumeric_Elemental, 1019 0, 1020 0, 1021 /*94*/ 0, 1022 MatMatTransposeMult_Elemental, 1023 MatMatTransposeMultSymbolic_Elemental, 1024 MatMatTransposeMultNumeric_Elemental, 1025 0, 1026 /*99*/ 0, 1027 0, 1028 0, 1029 MatConjugate_Elemental, 1030 0, 1031 /*104*/0, 1032 0, 1033 0, 1034 0, 1035 0, 1036 /*109*/MatMatSolve_Elemental, 1037 0, 1038 0, 1039 0, 1040 0, 1041 /*114*/0, 1042 0, 1043 0, 1044 0, 1045 0, 1046 /*119*/0, 1047 MatHermitianTranspose_Elemental, 1048 0, 1049 0, 1050 0, 1051 /*124*/0, 1052 0, 1053 0, 1054 0, 1055 0, 1056 /*129*/0, 1057 0, 1058 0, 1059 0, 1060 0, 1061 /*134*/0, 1062 0, 1063 0, 1064 0, 1065 0 1066 }; 1067 1068 /*MC 1069 MATELEMENTAL = "elemental" - A matrix type for dense matrices using the Elemental package 1070 1071 Options Database Keys: 1072 + -mat_type elemental - sets the matrix type to "elemental" during a call to MatSetFromOptions() 1073 - -mat_elemental_grid_height - sets Grid Height for 2D cyclic ordering of internal matrix 1074 1075 Level: beginner 1076 1077 .seealso: MATDENSE 1078 M*/ 1079 1080 #undef __FUNCT__ 1081 #define __FUNCT__ "MatCreate_Elemental" 1082 PETSC_EXTERN PetscErrorCode MatCreate_Elemental(Mat A) 1083 { 1084 Mat_Elemental *a; 1085 PetscErrorCode ierr; 1086 PetscBool flg,flg1; 1087 Mat_Elemental_Grid *commgrid; 1088 MPI_Comm icomm; 1089 PetscInt optv1; 1090 1091 PetscFunctionBegin; 1092 ierr = PetscElementalInitializePackage();CHKERRQ(ierr); 1093 ierr = PetscMemcpy(A->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1094 A->insertmode = NOT_SET_VALUES; 1095 1096 ierr = PetscNewLog(A,&a);CHKERRQ(ierr); 1097 A->data = (void*)a; 1098 1099 /* Set up the elemental matrix */ 1100 elem::mpi::Comm cxxcomm(PetscObjectComm((PetscObject)A)); 1101 1102 /* Grid needs to be shared between multiple Mats on the same communicator, implement by attribute caching on the MPI_Comm */ 1103 if (Petsc_Elemental_keyval == MPI_KEYVAL_INVALID) { 1104 ierr = MPI_Keyval_create(MPI_NULL_COPY_FN,MPI_NULL_DELETE_FN,&Petsc_Elemental_keyval,(void*)0); 1105 } 1106 ierr = PetscCommDuplicate(cxxcomm,&icomm,NULL);CHKERRQ(ierr); 1107 ierr = MPI_Attr_get(icomm,Petsc_Elemental_keyval,(void**)&commgrid,(int*)&flg);CHKERRQ(ierr); 1108 if (!flg) { 1109 ierr = PetscNewLog(A,&commgrid);CHKERRQ(ierr); 1110 1111 ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)A),((PetscObject)A)->prefix,"Elemental Options","Mat");CHKERRQ(ierr); 1112 /* displayed default grid sizes (CommSize,1) are set by us arbitrarily until elem::Grid() is called */ 1113 ierr = PetscOptionsInt("-mat_elemental_grid_height","Grid Height","None",elem::mpi::CommSize(cxxcomm),&optv1,&flg1);CHKERRQ(ierr); 1114 if (flg1) { 1115 if (elem::mpi::CommSize(cxxcomm) % optv1 != 0) { 1116 SETERRQ2(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_INCOMP,"Grid Height %D must evenly divide CommSize %D",optv1,(PetscInt)elem::mpi::CommSize(cxxcomm)); 1117 } 1118 commgrid->grid = new elem::Grid(cxxcomm,optv1); /* use user-provided grid height */ 1119 } else { 1120 commgrid->grid = new elem::Grid(cxxcomm); /* use Elemental default grid sizes */ 1121 } 1122 commgrid->grid_refct = 1; 1123 ierr = MPI_Attr_put(icomm,Petsc_Elemental_keyval,(void*)commgrid);CHKERRQ(ierr); 1124 PetscOptionsEnd(); 1125 } else { 1126 commgrid->grid_refct++; 1127 } 1128 ierr = PetscCommDestroy(&icomm);CHKERRQ(ierr); 1129 a->grid = commgrid->grid; 1130 a->emat = new elem::DistMatrix<PetscElemScalar>(*a->grid); 1131 a->esubmat = new elem::Matrix<PetscElemScalar>(1,1); 1132 a->interface = new elem::AxpyInterface<PetscElemScalar>; 1133 a->pivot = new elem::DistMatrix<PetscInt,elem::VC,elem::STAR>; 1134 1135 /* build cache for off array entries formed */ 1136 a->interface->Attach(elem::LOCAL_TO_GLOBAL,*(a->emat)); 1137 1138 ierr = PetscObjectComposeFunction((PetscObject)A,"MatGetOwnershipIS_C",MatGetOwnershipIS_Elemental);CHKERRQ(ierr); 1139 ierr = PetscObjectComposeFunction((PetscObject)A,"MatGetFactor_elemental_C",MatGetFactor_elemental_elemental);CHKERRQ(ierr); 1140 1141 ierr = PetscObjectChangeTypeName((PetscObject)A,MATELEMENTAL);CHKERRQ(ierr); 1142 PetscFunctionReturn(0); 1143 } 1144 1145