1 #include <h2opusconf.h> 2 /* skip compilation of this .cu file if H2OPUS is CPU only while PETSc has GPU support */ 3 #if !defined(__CUDACC__) || defined(H2OPUS_USE_GPU) 4 #include <h2opus.h> 5 #if defined(H2OPUS_USE_MPI) 6 #include <h2opus/distributed/distributed_h2opus_handle.h> 7 #include <h2opus/distributed/distributed_geometric_construction.h> 8 #include <h2opus/distributed/distributed_hgemv.h> 9 #include <h2opus/distributed/distributed_horthog.h> 10 #include <h2opus/distributed/distributed_hcompress.h> 11 #endif 12 #include <h2opus/util/boxentrygen.h> 13 #include <petsc/private/matimpl.h> 14 #include <petsc/private/vecimpl.h> 15 #include <petsc/private/deviceimpl.h> 16 #include <petscsf.h> 17 18 /* math2opusutils */ 19 PETSC_INTERN PetscErrorCode MatDenseGetH2OpusStridedSF(Mat, PetscSF, PetscSF *); 20 PETSC_INTERN PetscErrorCode VecSign(Vec, Vec); 21 PETSC_INTERN PetscErrorCode VecSetDelta(Vec, PetscInt); 22 PETSC_INTERN PetscErrorCode MatApproximateNorm_Private(Mat, NormType, PetscInt, PetscReal *); 23 24 #define MatH2OpusGetThrustPointer(v) thrust::raw_pointer_cast((v).data()) 25 26 /* Use GPU only if H2OPUS is configured for GPU */ 27 #if defined(PETSC_HAVE_CUDA) && defined(H2OPUS_USE_GPU) 28 #define PETSC_H2OPUS_USE_GPU 29 #endif 30 #if defined(PETSC_H2OPUS_USE_GPU) 31 #define MatH2OpusUpdateIfNeeded(A, B) MatBindToCPU(A, (PetscBool)((A)->boundtocpu || (B))) 32 #else 33 #define MatH2OpusUpdateIfNeeded(A, B) PETSC_SUCCESS 34 #endif 35 36 // TODO H2OPUS: 37 // DistributedHMatrix 38 // unsymmetric ? 39 // transpose for distributed_hgemv? 40 // clearData() 41 // Unify interface for sequential and parallel? 42 // Reuse geometric construction (almost possible, only the unsymmetric case is explicitly handled) 43 // 44 template <class T> 45 class PetscPointCloud : public H2OpusDataSet<T> { 46 private: 47 int dimension; 48 size_t num_points; 49 std::vector<T> pts; 50 51 public: 52 PetscPointCloud(int dim, size_t num_pts, const T coords[]) 53 { 54 dim = dim > 0 ? dim : 1; 55 this->dimension = dim; 56 this->num_points = num_pts; 57 58 pts.resize(num_pts * dim); 59 if (coords) { 60 for (size_t n = 0; n < num_pts; n++) 61 for (int i = 0; i < dim; i++) pts[n * dim + i] = coords[n * dim + i]; 62 } else { 63 PetscReal h = 1.0; //num_pts > 1 ? 1./(num_pts - 1) : 0.0; 64 for (size_t n = 0; n < num_pts; n++) { 65 pts[n * dim] = n * h; 66 for (int i = 1; i < dim; i++) pts[n * dim + i] = 0.0; 67 } 68 } 69 } 70 71 PetscPointCloud(const PetscPointCloud<T> &other) 72 { 73 size_t N = other.dimension * other.num_points; 74 this->dimension = other.dimension; 75 this->num_points = other.num_points; 76 this->pts.resize(N); 77 for (size_t i = 0; i < N; i++) this->pts[i] = other.pts[i]; 78 } 79 80 int getDimension() const { return dimension; } 81 82 size_t getDataSetSize() const { return num_points; } 83 84 T getDataPoint(size_t idx, int dim) const 85 { 86 assert(dim < dimension && idx < num_points); 87 return pts[idx * dimension + dim]; 88 } 89 90 void Print(std::ostream &out = std::cout) 91 { 92 out << "Dimension: " << dimension << std::endl; 93 out << "NumPoints: " << num_points << std::endl; 94 for (size_t n = 0; n < num_points; n++) { 95 for (int d = 0; d < dimension; d++) out << pts[n * dimension + d] << " "; 96 out << std::endl; 97 } 98 } 99 }; 100 101 template <class T> 102 class PetscFunctionGenerator { 103 private: 104 MatH2OpusKernelFn *k; 105 int dim; 106 void *ctx; 107 108 public: 109 PetscFunctionGenerator(MatH2OpusKernelFn *k, int dim, void *ctx) 110 { 111 this->k = k; 112 this->dim = dim; 113 this->ctx = ctx; 114 } 115 PetscFunctionGenerator(PetscFunctionGenerator &other) 116 { 117 this->k = other.k; 118 this->dim = other.dim; 119 this->ctx = other.ctx; 120 } 121 T operator()(PetscReal *pt1, PetscReal *pt2) { return (T)((*this->k)(this->dim, pt1, pt2, this->ctx)); } 122 }; 123 124 #include <../src/mat/impls/h2opus/math2opussampler.hpp> 125 126 /* just to not clutter the code */ 127 #if !defined(H2OPUS_USE_GPU) 128 typedef HMatrix HMatrix_GPU; 129 #if defined(H2OPUS_USE_MPI) 130 typedef DistributedHMatrix DistributedHMatrix_GPU; 131 #endif 132 #endif 133 134 typedef struct { 135 #if defined(H2OPUS_USE_MPI) 136 distributedH2OpusHandle_t handle; 137 #else 138 h2opusHandle_t handle; 139 #endif 140 /* Sequential and parallel matrices are two different classes at the moment */ 141 HMatrix *hmatrix; 142 #if defined(H2OPUS_USE_MPI) 143 DistributedHMatrix *dist_hmatrix; 144 #else 145 HMatrix *dist_hmatrix; /* just to not clutter the code */ 146 #endif 147 /* May use permutations */ 148 PetscSF sf; 149 PetscLayout h2opus_rmap, h2opus_cmap; 150 IS h2opus_indexmap; 151 thrust::host_vector<PetscScalar> *xx, *yy; 152 PetscInt xxs, yys; 153 PetscBool multsetup; 154 155 /* GPU */ 156 HMatrix_GPU *hmatrix_gpu; 157 #if defined(H2OPUS_USE_MPI) 158 DistributedHMatrix_GPU *dist_hmatrix_gpu; 159 #else 160 HMatrix_GPU *dist_hmatrix_gpu; /* just to not clutter the code */ 161 #endif 162 #if defined(PETSC_H2OPUS_USE_GPU) 163 thrust::device_vector<PetscScalar> *xx_gpu, *yy_gpu; 164 PetscInt xxs_gpu, yys_gpu; 165 #endif 166 167 /* construction from matvecs */ 168 PetscMatrixSampler *sampler; 169 PetscBool nativemult; 170 171 /* Admissibility */ 172 PetscReal eta; 173 PetscInt leafsize; 174 175 /* for dof reordering */ 176 PetscPointCloud<PetscReal> *ptcloud; 177 178 /* kernel for generating matrix entries */ 179 PetscFunctionGenerator<PetscScalar> *kernel; 180 181 /* basis orthogonalized? */ 182 PetscBool orthogonal; 183 184 /* customization */ 185 PetscInt basisord; 186 PetscInt max_rank; 187 PetscInt bs; 188 PetscReal rtol; 189 PetscInt norm_max_samples; 190 PetscBool check_construction; 191 PetscBool hara_verbose; 192 PetscBool resize; 193 194 /* keeps track of MatScale values */ 195 PetscScalar s; 196 } Mat_H2OPUS; 197 198 static PetscErrorCode MatDestroy_H2OPUS(Mat A) 199 { 200 Mat_H2OPUS *a = (Mat_H2OPUS *)A->data; 201 202 PetscFunctionBegin; 203 #if defined(H2OPUS_USE_MPI) 204 h2opusDestroyDistributedHandle(a->handle); 205 #else 206 h2opusDestroyHandle(a->handle); 207 #endif 208 delete a->dist_hmatrix; 209 delete a->hmatrix; 210 PetscCall(PetscSFDestroy(&a->sf)); 211 PetscCall(PetscLayoutDestroy(&a->h2opus_rmap)); 212 PetscCall(PetscLayoutDestroy(&a->h2opus_cmap)); 213 PetscCall(ISDestroy(&a->h2opus_indexmap)); 214 delete a->xx; 215 delete a->yy; 216 delete a->hmatrix_gpu; 217 delete a->dist_hmatrix_gpu; 218 #if defined(PETSC_H2OPUS_USE_GPU) 219 delete a->xx_gpu; 220 delete a->yy_gpu; 221 #endif 222 delete a->sampler; 223 delete a->ptcloud; 224 delete a->kernel; 225 PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatProductSetFromOptions_h2opus_seqdense_C", NULL)); 226 PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatProductSetFromOptions_h2opus_seqdensecuda_C", NULL)); 227 PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatProductSetFromOptions_h2opus_mpidense_C", NULL)); 228 PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatProductSetFromOptions_h2opus_mpidensecuda_C", NULL)); 229 PetscCall(PetscObjectChangeTypeName((PetscObject)A, NULL)); 230 PetscCall(PetscFree(A->data)); 231 PetscFunctionReturn(PETSC_SUCCESS); 232 } 233 234 PetscErrorCode MatH2OpusSetNativeMult(Mat A, PetscBool nm) 235 { 236 Mat_H2OPUS *a = (Mat_H2OPUS *)A->data; 237 PetscBool ish2opus; 238 239 PetscFunctionBegin; 240 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 241 PetscValidLogicalCollectiveBool(A, nm, 2); 242 PetscCall(PetscObjectTypeCompare((PetscObject)A, MATH2OPUS, &ish2opus)); 243 if (ish2opus) { 244 if (a->h2opus_rmap) { /* need to swap layouts for vector creation */ 245 if ((!a->nativemult && nm) || (a->nativemult && !nm)) { 246 PetscLayout t; 247 t = A->rmap; 248 A->rmap = a->h2opus_rmap; 249 a->h2opus_rmap = t; 250 t = A->cmap; 251 A->cmap = a->h2opus_cmap; 252 a->h2opus_cmap = t; 253 } 254 } 255 a->nativemult = nm; 256 } 257 PetscFunctionReturn(PETSC_SUCCESS); 258 } 259 260 PetscErrorCode MatH2OpusGetNativeMult(Mat A, PetscBool *nm) 261 { 262 Mat_H2OPUS *a = (Mat_H2OPUS *)A->data; 263 PetscBool ish2opus; 264 265 PetscFunctionBegin; 266 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 267 PetscAssertPointer(nm, 2); 268 PetscCall(PetscObjectTypeCompare((PetscObject)A, MATH2OPUS, &ish2opus)); 269 PetscCheck(ish2opus, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name); 270 *nm = a->nativemult; 271 PetscFunctionReturn(PETSC_SUCCESS); 272 } 273 274 PETSC_EXTERN PetscErrorCode MatNorm_H2OPUS(Mat A, NormType normtype, PetscReal *n) 275 { 276 PetscBool ish2opus; 277 PetscInt nmax = PETSC_DECIDE; 278 Mat_H2OPUS *a = NULL; 279 PetscBool mult = PETSC_FALSE; 280 281 PetscFunctionBegin; 282 PetscCall(PetscObjectTypeCompare((PetscObject)A, MATH2OPUS, &ish2opus)); 283 if (ish2opus) { /* set userdefine number of samples and fastpath for mult (norms are order independent) */ 284 a = (Mat_H2OPUS *)A->data; 285 286 nmax = a->norm_max_samples; 287 mult = a->nativemult; 288 PetscCall(MatH2OpusSetNativeMult(A, PETSC_TRUE)); 289 } else { 290 PetscCall(PetscOptionsGetInt(((PetscObject)A)->options, ((PetscObject)A)->prefix, "-mat_approximate_norm_samples", &nmax, NULL)); 291 } 292 PetscCall(MatApproximateNorm_Private(A, normtype, nmax, n)); 293 if (a) PetscCall(MatH2OpusSetNativeMult(A, mult)); 294 PetscFunctionReturn(PETSC_SUCCESS); 295 } 296 297 static PetscErrorCode MatH2OpusResizeBuffers_Private(Mat A, PetscInt xN, PetscInt yN) 298 { 299 Mat_H2OPUS *h2opus = (Mat_H2OPUS *)A->data; 300 PetscInt n; 301 PetscBool boundtocpu = PETSC_TRUE; 302 303 PetscFunctionBegin; 304 #if defined(PETSC_H2OPUS_USE_GPU) 305 boundtocpu = A->boundtocpu; 306 #endif 307 PetscCall(PetscSFGetGraph(h2opus->sf, NULL, &n, NULL, NULL)); 308 if (boundtocpu) { 309 if (h2opus->xxs < xN) { 310 h2opus->xx->resize(n * xN); 311 h2opus->xxs = xN; 312 } 313 if (h2opus->yys < yN) { 314 h2opus->yy->resize(n * yN); 315 h2opus->yys = yN; 316 } 317 } 318 #if defined(PETSC_H2OPUS_USE_GPU) 319 if (!boundtocpu) { 320 if (h2opus->xxs_gpu < xN) { 321 h2opus->xx_gpu->resize(n * xN); 322 h2opus->xxs_gpu = xN; 323 } 324 if (h2opus->yys_gpu < yN) { 325 h2opus->yy_gpu->resize(n * yN); 326 h2opus->yys_gpu = yN; 327 } 328 } 329 #endif 330 PetscFunctionReturn(PETSC_SUCCESS); 331 } 332 333 static PetscErrorCode MatMultNKernel_H2OPUS(Mat A, PetscBool transA, Mat B, Mat C) 334 { 335 Mat_H2OPUS *h2opus = (Mat_H2OPUS *)A->data; 336 #if defined(H2OPUS_USE_MPI) 337 h2opusHandle_t handle = h2opus->handle->handle; 338 #else 339 h2opusHandle_t handle = h2opus->handle; 340 #endif 341 PetscBool boundtocpu = PETSC_TRUE; 342 PetscScalar *xx, *yy, *uxx, *uyy; 343 PetscInt blda, clda; 344 PetscMPIInt size; 345 PetscSF bsf, csf; 346 PetscBool usesf = (PetscBool)(h2opus->sf && !h2opus->nativemult); 347 348 PetscFunctionBegin; 349 HLibProfile::clear(); 350 #if defined(PETSC_H2OPUS_USE_GPU) 351 boundtocpu = A->boundtocpu; 352 #endif 353 PetscCall(MatDenseGetLDA(B, &blda)); 354 PetscCall(MatDenseGetLDA(C, &clda)); 355 if (usesf) { 356 PetscInt n; 357 358 PetscCall(MatDenseGetH2OpusStridedSF(B, h2opus->sf, &bsf)); 359 PetscCall(MatDenseGetH2OpusStridedSF(C, h2opus->sf, &csf)); 360 361 PetscCall(MatH2OpusResizeBuffers_Private(A, B->cmap->N, C->cmap->N)); 362 PetscCall(PetscSFGetGraph(h2opus->sf, NULL, &n, NULL, NULL)); 363 blda = n; 364 clda = n; 365 } 366 PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 367 if (boundtocpu) { 368 PetscCall(MatDenseGetArrayRead(B, (const PetscScalar **)&xx)); 369 PetscCall(MatDenseGetArrayWrite(C, &yy)); 370 if (usesf) { 371 uxx = MatH2OpusGetThrustPointer(*h2opus->xx); 372 uyy = MatH2OpusGetThrustPointer(*h2opus->yy); 373 PetscCall(PetscSFBcastBegin(bsf, MPIU_SCALAR, xx, uxx, MPI_REPLACE)); 374 PetscCall(PetscSFBcastEnd(bsf, MPIU_SCALAR, xx, uxx, MPI_REPLACE)); 375 } else { 376 uxx = xx; 377 uyy = yy; 378 } 379 if (size > 1) { 380 PetscCheck(h2opus->dist_hmatrix, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing distributed CPU matrix"); 381 PetscCheck(!transA || A->symmetric, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "MatMultTranspose not yet coded in parallel"); 382 #if defined(H2OPUS_USE_MPI) 383 distributed_hgemv(/* transA ? H2Opus_Trans : H2Opus_NoTrans, */ h2opus->s, *h2opus->dist_hmatrix, uxx, blda, 0.0, uyy, clda, B->cmap->N, h2opus->handle); 384 #endif 385 } else { 386 PetscCheck(h2opus->hmatrix, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing CPU matrix"); 387 hgemv(transA ? H2Opus_Trans : H2Opus_NoTrans, h2opus->s, *h2opus->hmatrix, uxx, blda, 0.0, uyy, clda, B->cmap->N, handle); 388 } 389 PetscCall(MatDenseRestoreArrayRead(B, (const PetscScalar **)&xx)); 390 if (usesf) { 391 PetscCall(PetscSFReduceBegin(csf, MPIU_SCALAR, uyy, yy, MPI_REPLACE)); 392 PetscCall(PetscSFReduceEnd(csf, MPIU_SCALAR, uyy, yy, MPI_REPLACE)); 393 } 394 PetscCall(MatDenseRestoreArrayWrite(C, &yy)); 395 #if defined(PETSC_H2OPUS_USE_GPU) 396 } else { 397 PetscBool ciscuda, biscuda; 398 399 /* If not of type seqdensecuda, convert on the fly (i.e. allocate GPU memory) */ 400 PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &biscuda, MATSEQDENSECUDA, MATMPIDENSECUDA, "")); 401 if (!biscuda) PetscCall(MatConvert(B, MATDENSECUDA, MAT_INPLACE_MATRIX, &B)); 402 PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &ciscuda, MATSEQDENSECUDA, MATMPIDENSECUDA, "")); 403 if (!ciscuda) { 404 C->assembled = PETSC_TRUE; 405 PetscCall(MatConvert(C, MATDENSECUDA, MAT_INPLACE_MATRIX, &C)); 406 } 407 PetscCall(MatDenseCUDAGetArrayRead(B, (const PetscScalar **)&xx)); 408 PetscCall(MatDenseCUDAGetArrayWrite(C, &yy)); 409 if (usesf) { 410 uxx = MatH2OpusGetThrustPointer(*h2opus->xx_gpu); 411 uyy = MatH2OpusGetThrustPointer(*h2opus->yy_gpu); 412 PetscCall(PetscSFBcastBegin(bsf, MPIU_SCALAR, xx, uxx, MPI_REPLACE)); 413 PetscCall(PetscSFBcastEnd(bsf, MPIU_SCALAR, xx, uxx, MPI_REPLACE)); 414 } else { 415 uxx = xx; 416 uyy = yy; 417 } 418 PetscCall(PetscLogGpuTimeBegin()); 419 if (size > 1) { 420 PetscCheck(h2opus->dist_hmatrix_gpu, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing distributed GPU matrix"); 421 PetscCheck(!transA || A->symmetric, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "MatMultTranspose not yet coded in parallel"); 422 #if defined(H2OPUS_USE_MPI) 423 distributed_hgemv(/* transA ? H2Opus_Trans : H2Opus_NoTrans, */ h2opus->s, *h2opus->dist_hmatrix_gpu, uxx, blda, 0.0, uyy, clda, B->cmap->N, h2opus->handle); 424 #endif 425 } else { 426 PetscCheck(h2opus->hmatrix_gpu, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing GPU matrix"); 427 hgemv(transA ? H2Opus_Trans : H2Opus_NoTrans, h2opus->s, *h2opus->hmatrix_gpu, uxx, blda, 0.0, uyy, clda, B->cmap->N, handle); 428 } 429 PetscCall(PetscLogGpuTimeEnd()); 430 PetscCall(MatDenseCUDARestoreArrayRead(B, (const PetscScalar **)&xx)); 431 if (usesf) { 432 PetscCall(PetscSFReduceBegin(csf, MPIU_SCALAR, uyy, yy, MPI_REPLACE)); 433 PetscCall(PetscSFReduceEnd(csf, MPIU_SCALAR, uyy, yy, MPI_REPLACE)); 434 } 435 PetscCall(MatDenseCUDARestoreArrayWrite(C, &yy)); 436 if (!biscuda) PetscCall(MatConvert(B, MATDENSE, MAT_INPLACE_MATRIX, &B)); 437 if (!ciscuda) PetscCall(MatConvert(C, MATDENSE, MAT_INPLACE_MATRIX, &C)); 438 #endif 439 } 440 { /* log flops */ 441 double gops, time, perf, dev; 442 HLibProfile::getHgemvPerf(gops, time, perf, dev); 443 #if defined(PETSC_H2OPUS_USE_GPU) 444 if (boundtocpu) { 445 PetscCall(PetscLogFlops(1e9 * gops)); 446 } else { 447 PetscCall(PetscLogGpuFlops(1e9 * gops)); 448 } 449 #else 450 PetscCall(PetscLogFlops(1e9 * gops)); 451 #endif 452 } 453 PetscFunctionReturn(PETSC_SUCCESS); 454 } 455 456 static PetscErrorCode MatProductNumeric_H2OPUS(Mat C) 457 { 458 Mat_Product *product = C->product; 459 460 PetscFunctionBegin; 461 MatCheckProduct(C, 1); 462 switch (product->type) { 463 case MATPRODUCT_AB: 464 PetscCall(MatMultNKernel_H2OPUS(product->A, PETSC_FALSE, product->B, C)); 465 break; 466 case MATPRODUCT_AtB: 467 PetscCall(MatMultNKernel_H2OPUS(product->A, PETSC_TRUE, product->B, C)); 468 break; 469 default: 470 SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatProduct type %s is not supported", MatProductTypes[product->type]); 471 } 472 PetscFunctionReturn(PETSC_SUCCESS); 473 } 474 475 static PetscErrorCode MatProductSymbolic_H2OPUS(Mat C) 476 { 477 Mat_Product *product = C->product; 478 PetscBool cisdense; 479 Mat A, B; 480 481 PetscFunctionBegin; 482 MatCheckProduct(C, 1); 483 A = product->A; 484 B = product->B; 485 switch (product->type) { 486 case MATPRODUCT_AB: 487 PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N)); 488 PetscCall(MatSetBlockSizesFromMats(C, product->A, product->B)); 489 PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATSEQDENSE, MATMPIDENSE, MATSEQDENSECUDA, MATMPIDENSECUDA, "")); 490 if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)product->B)->type_name)); 491 PetscCall(MatSetUp(C)); 492 break; 493 case MATPRODUCT_AtB: 494 PetscCall(MatSetSizes(C, A->cmap->n, B->cmap->n, A->cmap->N, B->cmap->N)); 495 PetscCall(MatSetBlockSizesFromMats(C, product->A, product->B)); 496 PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATSEQDENSE, MATMPIDENSE, MATSEQDENSECUDA, MATMPIDENSECUDA, "")); 497 if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)product->B)->type_name)); 498 PetscCall(MatSetUp(C)); 499 break; 500 default: 501 SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatProduct type %s is not supported", MatProductTypes[product->type]); 502 } 503 C->ops->productsymbolic = NULL; 504 C->ops->productnumeric = MatProductNumeric_H2OPUS; 505 PetscFunctionReturn(PETSC_SUCCESS); 506 } 507 508 static PetscErrorCode MatProductSetFromOptions_H2OPUS(Mat C) 509 { 510 PetscFunctionBegin; 511 MatCheckProduct(C, 1); 512 if (C->product->type == MATPRODUCT_AB || C->product->type == MATPRODUCT_AtB) C->ops->productsymbolic = MatProductSymbolic_H2OPUS; 513 PetscFunctionReturn(PETSC_SUCCESS); 514 } 515 516 static PetscErrorCode MatMultKernel_H2OPUS(Mat A, Vec x, PetscScalar sy, Vec y, PetscBool trans) 517 { 518 Mat_H2OPUS *h2opus = (Mat_H2OPUS *)A->data; 519 #if defined(H2OPUS_USE_MPI) 520 h2opusHandle_t handle = h2opus->handle->handle; 521 #else 522 h2opusHandle_t handle = h2opus->handle; 523 #endif 524 PetscBool boundtocpu = PETSC_TRUE; 525 PetscInt n; 526 PetscScalar *xx, *yy, *uxx, *uyy; 527 PetscMPIInt size; 528 PetscBool usesf = (PetscBool)(h2opus->sf && !h2opus->nativemult); 529 530 PetscFunctionBegin; 531 HLibProfile::clear(); 532 PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 533 #if defined(PETSC_H2OPUS_USE_GPU) 534 boundtocpu = A->boundtocpu; 535 #endif 536 if (usesf) { 537 PetscCall(PetscSFGetGraph(h2opus->sf, NULL, &n, NULL, NULL)); 538 } else n = A->rmap->n; 539 if (boundtocpu) { 540 PetscCall(VecGetArrayRead(x, (const PetscScalar **)&xx)); 541 if (sy == 0.0) { 542 PetscCall(VecGetArrayWrite(y, &yy)); 543 } else { 544 PetscCall(VecGetArray(y, &yy)); 545 } 546 if (usesf) { 547 uxx = MatH2OpusGetThrustPointer(*h2opus->xx); 548 uyy = MatH2OpusGetThrustPointer(*h2opus->yy); 549 550 PetscCall(PetscSFBcastBegin(h2opus->sf, MPIU_SCALAR, xx, uxx, MPI_REPLACE)); 551 PetscCall(PetscSFBcastEnd(h2opus->sf, MPIU_SCALAR, xx, uxx, MPI_REPLACE)); 552 if (sy != 0.0) { 553 PetscCall(PetscSFBcastBegin(h2opus->sf, MPIU_SCALAR, yy, uyy, MPI_REPLACE)); 554 PetscCall(PetscSFBcastEnd(h2opus->sf, MPIU_SCALAR, yy, uyy, MPI_REPLACE)); 555 } 556 } else { 557 uxx = xx; 558 uyy = yy; 559 } 560 if (size > 1) { 561 PetscCheck(h2opus->dist_hmatrix, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing distributed CPU matrix"); 562 PetscCheck(!trans || A->symmetric, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "MatMultTranspose not yet coded in parallel"); 563 #if defined(H2OPUS_USE_MPI) 564 distributed_hgemv(/*trans ? H2Opus_Trans : H2Opus_NoTrans, */ h2opus->s, *h2opus->dist_hmatrix, uxx, n, sy, uyy, n, 1, h2opus->handle); 565 #endif 566 } else { 567 PetscCheck(h2opus->hmatrix, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing CPU matrix"); 568 hgemv(trans ? H2Opus_Trans : H2Opus_NoTrans, h2opus->s, *h2opus->hmatrix, uxx, n, sy, uyy, n, 1, handle); 569 } 570 PetscCall(VecRestoreArrayRead(x, (const PetscScalar **)&xx)); 571 if (usesf) { 572 PetscCall(PetscSFReduceBegin(h2opus->sf, MPIU_SCALAR, uyy, yy, MPI_REPLACE)); 573 PetscCall(PetscSFReduceEnd(h2opus->sf, MPIU_SCALAR, uyy, yy, MPI_REPLACE)); 574 } 575 if (sy == 0.0) { 576 PetscCall(VecRestoreArrayWrite(y, &yy)); 577 } else { 578 PetscCall(VecRestoreArray(y, &yy)); 579 } 580 #if defined(PETSC_H2OPUS_USE_GPU) 581 } else { 582 PetscCall(VecCUDAGetArrayRead(x, (const PetscScalar **)&xx)); 583 if (sy == 0.0) { 584 PetscCall(VecCUDAGetArrayWrite(y, &yy)); 585 } else { 586 PetscCall(VecCUDAGetArray(y, &yy)); 587 } 588 if (usesf) { 589 uxx = MatH2OpusGetThrustPointer(*h2opus->xx_gpu); 590 uyy = MatH2OpusGetThrustPointer(*h2opus->yy_gpu); 591 592 PetscCall(PetscSFBcastBegin(h2opus->sf, MPIU_SCALAR, xx, uxx, MPI_REPLACE)); 593 PetscCall(PetscSFBcastEnd(h2opus->sf, MPIU_SCALAR, xx, uxx, MPI_REPLACE)); 594 if (sy != 0.0) { 595 PetscCall(PetscSFBcastBegin(h2opus->sf, MPIU_SCALAR, yy, uyy, MPI_REPLACE)); 596 PetscCall(PetscSFBcastEnd(h2opus->sf, MPIU_SCALAR, yy, uyy, MPI_REPLACE)); 597 } 598 } else { 599 uxx = xx; 600 uyy = yy; 601 } 602 PetscCall(PetscLogGpuTimeBegin()); 603 if (size > 1) { 604 PetscCheck(h2opus->dist_hmatrix_gpu, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing distributed GPU matrix"); 605 PetscCheck(!trans || A->symmetric, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "MatMultTranspose not yet coded in parallel"); 606 #if defined(H2OPUS_USE_MPI) 607 distributed_hgemv(/*trans ? H2Opus_Trans : H2Opus_NoTrans, */ h2opus->s, *h2opus->dist_hmatrix_gpu, uxx, n, sy, uyy, n, 1, h2opus->handle); 608 #endif 609 } else { 610 PetscCheck(h2opus->hmatrix_gpu, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing GPU matrix"); 611 hgemv(trans ? H2Opus_Trans : H2Opus_NoTrans, h2opus->s, *h2opus->hmatrix_gpu, uxx, n, sy, uyy, n, 1, handle); 612 } 613 PetscCall(PetscLogGpuTimeEnd()); 614 PetscCall(VecCUDARestoreArrayRead(x, (const PetscScalar **)&xx)); 615 if (usesf) { 616 PetscCall(PetscSFReduceBegin(h2opus->sf, MPIU_SCALAR, uyy, yy, MPI_REPLACE)); 617 PetscCall(PetscSFReduceEnd(h2opus->sf, MPIU_SCALAR, uyy, yy, MPI_REPLACE)); 618 } 619 if (sy == 0.0) { 620 PetscCall(VecCUDARestoreArrayWrite(y, &yy)); 621 } else { 622 PetscCall(VecCUDARestoreArray(y, &yy)); 623 } 624 #endif 625 } 626 { /* log flops */ 627 double gops, time, perf, dev; 628 HLibProfile::getHgemvPerf(gops, time, perf, dev); 629 #if defined(PETSC_H2OPUS_USE_GPU) 630 if (boundtocpu) { 631 PetscCall(PetscLogFlops(1e9 * gops)); 632 } else { 633 PetscCall(PetscLogGpuFlops(1e9 * gops)); 634 } 635 #else 636 PetscCall(PetscLogFlops(1e9 * gops)); 637 #endif 638 } 639 PetscFunctionReturn(PETSC_SUCCESS); 640 } 641 642 static PetscErrorCode MatMultTranspose_H2OPUS(Mat A, Vec x, Vec y) 643 { 644 PetscBool xiscuda, yiscuda; 645 646 PetscFunctionBegin; 647 PetscCall(PetscObjectTypeCompareAny((PetscObject)x, &xiscuda, VECSEQCUDA, VECMPICUDA, "")); 648 PetscCall(PetscObjectTypeCompareAny((PetscObject)y, &yiscuda, VECSEQCUDA, VECMPICUDA, "")); 649 PetscCall(MatH2OpusUpdateIfNeeded(A, !xiscuda || !yiscuda)); 650 PetscCall(MatMultKernel_H2OPUS(A, x, 0.0, y, PETSC_TRUE)); 651 PetscFunctionReturn(PETSC_SUCCESS); 652 } 653 654 static PetscErrorCode MatMult_H2OPUS(Mat A, Vec x, Vec y) 655 { 656 PetscBool xiscuda, yiscuda; 657 658 PetscFunctionBegin; 659 PetscCall(PetscObjectTypeCompareAny((PetscObject)x, &xiscuda, VECSEQCUDA, VECMPICUDA, "")); 660 PetscCall(PetscObjectTypeCompareAny((PetscObject)y, &yiscuda, VECSEQCUDA, VECMPICUDA, "")); 661 PetscCall(MatH2OpusUpdateIfNeeded(A, !xiscuda || !yiscuda)); 662 PetscCall(MatMultKernel_H2OPUS(A, x, 0.0, y, PETSC_FALSE)); 663 PetscFunctionReturn(PETSC_SUCCESS); 664 } 665 666 static PetscErrorCode MatMultTransposeAdd_H2OPUS(Mat A, Vec x, Vec y, Vec z) 667 { 668 PetscBool xiscuda, ziscuda; 669 670 PetscFunctionBegin; 671 PetscCall(VecCopy(y, z)); 672 PetscCall(PetscObjectTypeCompareAny((PetscObject)x, &xiscuda, VECSEQCUDA, VECMPICUDA, "")); 673 PetscCall(PetscObjectTypeCompareAny((PetscObject)z, &ziscuda, VECSEQCUDA, VECMPICUDA, "")); 674 PetscCall(MatH2OpusUpdateIfNeeded(A, !xiscuda || !ziscuda)); 675 PetscCall(MatMultKernel_H2OPUS(A, x, 1.0, z, PETSC_TRUE)); 676 PetscFunctionReturn(PETSC_SUCCESS); 677 } 678 679 static PetscErrorCode MatMultAdd_H2OPUS(Mat A, Vec x, Vec y, Vec z) 680 { 681 PetscBool xiscuda, ziscuda; 682 683 PetscFunctionBegin; 684 PetscCall(VecCopy(y, z)); 685 PetscCall(PetscObjectTypeCompareAny((PetscObject)x, &xiscuda, VECSEQCUDA, VECMPICUDA, "")); 686 PetscCall(PetscObjectTypeCompareAny((PetscObject)z, &ziscuda, VECSEQCUDA, VECMPICUDA, "")); 687 PetscCall(MatH2OpusUpdateIfNeeded(A, !xiscuda || !ziscuda)); 688 PetscCall(MatMultKernel_H2OPUS(A, x, 1.0, z, PETSC_FALSE)); 689 PetscFunctionReturn(PETSC_SUCCESS); 690 } 691 692 static PetscErrorCode MatScale_H2OPUS(Mat A, PetscScalar s) 693 { 694 Mat_H2OPUS *a = (Mat_H2OPUS *)A->data; 695 696 PetscFunctionBegin; 697 a->s *= s; 698 PetscFunctionReturn(PETSC_SUCCESS); 699 } 700 701 static PetscErrorCode MatSetFromOptions_H2OPUS(Mat A, PetscOptionItems *PetscOptionsObject) 702 { 703 Mat_H2OPUS *a = (Mat_H2OPUS *)A->data; 704 705 PetscFunctionBegin; 706 PetscOptionsHeadBegin(PetscOptionsObject, "H2OPUS options"); 707 PetscCall(PetscOptionsInt("-mat_h2opus_leafsize", "Leaf size of cluster tree", NULL, a->leafsize, &a->leafsize, NULL)); 708 PetscCall(PetscOptionsReal("-mat_h2opus_eta", "Admissibility condition tolerance", NULL, a->eta, &a->eta, NULL)); 709 PetscCall(PetscOptionsInt("-mat_h2opus_order", "Basis order for off-diagonal sampling when constructed from kernel", NULL, a->basisord, &a->basisord, NULL)); 710 PetscCall(PetscOptionsInt("-mat_h2opus_maxrank", "Maximum rank when constructed from matvecs", NULL, a->max_rank, &a->max_rank, NULL)); 711 PetscCall(PetscOptionsInt("-mat_h2opus_samples", "Maximum number of samples to be taken concurrently when constructing from matvecs", NULL, a->bs, &a->bs, NULL)); 712 PetscCall(PetscOptionsInt("-mat_h2opus_normsamples", "Maximum number of samples to be when estimating norms", NULL, a->norm_max_samples, &a->norm_max_samples, NULL)); 713 PetscCall(PetscOptionsReal("-mat_h2opus_rtol", "Relative tolerance for construction from sampling", NULL, a->rtol, &a->rtol, NULL)); 714 PetscCall(PetscOptionsBool("-mat_h2opus_check", "Check error when constructing from sampling during MatAssemblyEnd()", NULL, a->check_construction, &a->check_construction, NULL)); 715 PetscCall(PetscOptionsBool("-mat_h2opus_hara_verbose", "Verbose output from hara construction", NULL, a->hara_verbose, &a->hara_verbose, NULL)); 716 PetscCall(PetscOptionsBool("-mat_h2opus_resize", "Resize after compression", NULL, a->resize, &a->resize, NULL)); 717 PetscOptionsHeadEnd(); 718 PetscFunctionReturn(PETSC_SUCCESS); 719 } 720 721 static PetscErrorCode MatH2OpusSetCoords_H2OPUS(Mat, PetscInt, const PetscReal[], PetscBool, MatH2OpusKernelFn *, void *); 722 723 static PetscErrorCode MatH2OpusInferCoordinates_Private(Mat A) 724 { 725 Mat_H2OPUS *a = (Mat_H2OPUS *)A->data; 726 Vec c; 727 PetscInt spacedim; 728 const PetscScalar *coords; 729 730 PetscFunctionBegin; 731 if (a->ptcloud) PetscFunctionReturn(PETSC_SUCCESS); 732 PetscCall(PetscObjectQuery((PetscObject)A, "__math2opus_coords", (PetscObject *)&c)); 733 if (!c && a->sampler) { 734 Mat S = a->sampler->GetSamplingMat(); 735 736 PetscCall(PetscObjectQuery((PetscObject)S, "__math2opus_coords", (PetscObject *)&c)); 737 } 738 if (!c) { 739 PetscCall(MatH2OpusSetCoords_H2OPUS(A, -1, NULL, PETSC_FALSE, NULL, NULL)); 740 } else { 741 PetscCall(VecGetArrayRead(c, &coords)); 742 PetscCall(VecGetBlockSize(c, &spacedim)); 743 PetscCall(MatH2OpusSetCoords_H2OPUS(A, spacedim, coords, PETSC_FALSE, NULL, NULL)); 744 PetscCall(VecRestoreArrayRead(c, &coords)); 745 } 746 PetscFunctionReturn(PETSC_SUCCESS); 747 } 748 749 static PetscErrorCode MatSetUpMultiply_H2OPUS(Mat A) 750 { 751 MPI_Comm comm; 752 PetscMPIInt size; 753 Mat_H2OPUS *a = (Mat_H2OPUS *)A->data; 754 PetscInt n = 0, *idx = NULL; 755 int *iidx = NULL; 756 PetscCopyMode own; 757 PetscBool rid; 758 759 PetscFunctionBegin; 760 if (a->multsetup) PetscFunctionReturn(PETSC_SUCCESS); 761 if (a->sf) { /* MatDuplicate_H2OPUS takes reference to the SF */ 762 PetscCall(PetscSFGetGraph(a->sf, NULL, &n, NULL, NULL)); 763 #if defined(PETSC_H2OPUS_USE_GPU) 764 a->xx_gpu = new thrust::device_vector<PetscScalar>(n); 765 a->yy_gpu = new thrust::device_vector<PetscScalar>(n); 766 a->xxs_gpu = 1; 767 a->yys_gpu = 1; 768 #endif 769 a->xx = new thrust::host_vector<PetscScalar>(n); 770 a->yy = new thrust::host_vector<PetscScalar>(n); 771 a->xxs = 1; 772 a->yys = 1; 773 } else { 774 IS is; 775 PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 776 PetscCallMPI(MPI_Comm_size(comm, &size)); 777 if (!a->h2opus_indexmap) { 778 if (size > 1) { 779 PetscCheck(a->dist_hmatrix, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing distributed CPU matrix"); 780 #if defined(H2OPUS_USE_MPI) 781 iidx = MatH2OpusGetThrustPointer(a->dist_hmatrix->basis_tree.basis_branch.index_map); 782 n = a->dist_hmatrix->basis_tree.basis_branch.index_map.size(); 783 #endif 784 } else { 785 iidx = MatH2OpusGetThrustPointer(a->hmatrix->u_basis_tree.index_map); 786 n = a->hmatrix->u_basis_tree.index_map.size(); 787 } 788 789 if (PetscDefined(USE_64BIT_INDICES)) { 790 PetscInt i; 791 792 own = PETSC_OWN_POINTER; 793 PetscCall(PetscMalloc1(n, &idx)); 794 for (i = 0; i < n; i++) idx[i] = iidx[i]; 795 } else { 796 own = PETSC_COPY_VALUES; 797 idx = (PetscInt *)iidx; 798 } 799 PetscCall(ISCreateGeneral(comm, n, idx, own, &is)); 800 PetscCall(ISSetPermutation(is)); 801 PetscCall(ISViewFromOptions(is, (PetscObject)A, "-mat_h2opus_indexmap_view")); 802 a->h2opus_indexmap = is; 803 } 804 PetscCall(ISGetLocalSize(a->h2opus_indexmap, &n)); 805 PetscCall(ISGetIndices(a->h2opus_indexmap, (const PetscInt **)&idx)); 806 rid = (PetscBool)(n == A->rmap->n); 807 PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &rid, 1, MPIU_BOOL, MPI_LAND, comm)); 808 if (rid) PetscCall(ISIdentity(a->h2opus_indexmap, &rid)); 809 if (!rid) { 810 if (size > 1) { /* Parallel distribution may be different, save it here for fast path in MatMult (see MatH2OpusSetNativeMult) */ 811 PetscCall(PetscLayoutCreate(comm, &a->h2opus_rmap)); 812 PetscCall(PetscLayoutSetLocalSize(a->h2opus_rmap, n)); 813 PetscCall(PetscLayoutSetUp(a->h2opus_rmap)); 814 PetscCall(PetscLayoutReference(a->h2opus_rmap, &a->h2opus_cmap)); 815 } 816 PetscCall(PetscSFCreate(comm, &a->sf)); 817 PetscCall(PetscSFSetGraphLayout(a->sf, A->rmap, n, NULL, PETSC_OWN_POINTER, idx)); 818 PetscCall(PetscSFSetUp(a->sf)); 819 PetscCall(PetscSFViewFromOptions(a->sf, (PetscObject)A, "-mat_h2opus_sf_view")); 820 #if defined(PETSC_H2OPUS_USE_GPU) 821 a->xx_gpu = new thrust::device_vector<PetscScalar>(n); 822 a->yy_gpu = new thrust::device_vector<PetscScalar>(n); 823 a->xxs_gpu = 1; 824 a->yys_gpu = 1; 825 #endif 826 a->xx = new thrust::host_vector<PetscScalar>(n); 827 a->yy = new thrust::host_vector<PetscScalar>(n); 828 a->xxs = 1; 829 a->yys = 1; 830 } 831 PetscCall(ISRestoreIndices(a->h2opus_indexmap, (const PetscInt **)&idx)); 832 } 833 a->multsetup = PETSC_TRUE; 834 PetscFunctionReturn(PETSC_SUCCESS); 835 } 836 837 static PetscErrorCode MatAssemblyEnd_H2OPUS(Mat A, MatAssemblyType assemblytype) 838 { 839 Mat_H2OPUS *a = (Mat_H2OPUS *)A->data; 840 #if defined(H2OPUS_USE_MPI) 841 h2opusHandle_t handle = a->handle->handle; 842 #else 843 h2opusHandle_t handle = a->handle; 844 #endif 845 PetscBool kernel = PETSC_FALSE; 846 PetscBool boundtocpu = PETSC_TRUE; 847 PetscBool samplingdone = PETSC_FALSE; 848 MPI_Comm comm; 849 PetscMPIInt size; 850 851 PetscFunctionBegin; 852 PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 853 PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Different row and column local sizes are not supported"); 854 PetscCheck(A->rmap->N == A->cmap->N, comm, PETSC_ERR_SUP, "Rectangular matrices are not supported"); 855 856 /* XXX */ 857 a->leafsize = PetscMin(a->leafsize, PetscMin(A->rmap->N, A->cmap->N)); 858 859 PetscCallMPI(MPI_Comm_size(comm, &size)); 860 /* TODO REUSABILITY of geometric construction */ 861 delete a->hmatrix; 862 delete a->dist_hmatrix; 863 #if defined(PETSC_H2OPUS_USE_GPU) 864 delete a->hmatrix_gpu; 865 delete a->dist_hmatrix_gpu; 866 #endif 867 a->orthogonal = PETSC_FALSE; 868 869 /* TODO: other? */ 870 H2OpusBoxCenterAdmissibility adm(a->eta); 871 872 PetscCall(PetscLogEventBegin(MAT_H2Opus_Build, A, 0, 0, 0)); 873 if (size > 1) { 874 #if defined(H2OPUS_USE_MPI) 875 a->dist_hmatrix = new DistributedHMatrix(A->rmap->n /* ,A->symmetric */); 876 #else 877 a->dist_hmatrix = NULL; 878 #endif 879 } else a->hmatrix = new HMatrix(A->rmap->n, A->symmetric == PETSC_BOOL3_TRUE); 880 PetscCall(MatH2OpusInferCoordinates_Private(A)); 881 PetscCheck(a->ptcloud, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing pointcloud"); 882 if (a->kernel) { 883 BoxEntryGen<PetscScalar, H2OPUS_HWTYPE_CPU, PetscFunctionGenerator<PetscScalar>> entry_gen(*a->kernel); 884 if (size > 1) { 885 PetscCheck(a->dist_hmatrix, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing distributed CPU matrix"); 886 #if defined(H2OPUS_USE_MPI) 887 buildDistributedHMatrix(*a->dist_hmatrix, a->ptcloud, adm, entry_gen, a->leafsize, a->basisord, a->handle); 888 #endif 889 } else { 890 buildHMatrix(*a->hmatrix, a->ptcloud, adm, entry_gen, a->leafsize, a->basisord); 891 } 892 kernel = PETSC_TRUE; 893 } else { 894 PetscCheck(size <= 1, comm, PETSC_ERR_SUP, "Construction from sampling not supported in parallel"); 895 buildHMatrixStructure(*a->hmatrix, a->ptcloud, a->leafsize, adm); 896 } 897 PetscCall(MatSetUpMultiply_H2OPUS(A)); 898 899 #if defined(PETSC_H2OPUS_USE_GPU) 900 boundtocpu = A->boundtocpu; 901 if (!boundtocpu) { 902 if (size > 1) { 903 PetscCheck(a->dist_hmatrix, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing distributed CPU matrix"); 904 #if defined(H2OPUS_USE_MPI) 905 a->dist_hmatrix_gpu = new DistributedHMatrix_GPU(*a->dist_hmatrix); 906 #endif 907 } else { 908 a->hmatrix_gpu = new HMatrix_GPU(*a->hmatrix); 909 } 910 } 911 #endif 912 if (size == 1) { 913 if (!kernel && a->sampler && a->sampler->GetSamplingMat()) { 914 PetscReal Anorm; 915 bool verbose; 916 917 PetscCall(PetscOptionsGetBool(((PetscObject)A)->options, ((PetscObject)A)->prefix, "-mat_h2opus_hara_verbose", &a->hara_verbose, NULL)); 918 verbose = a->hara_verbose; 919 PetscCall(MatApproximateNorm_Private(a->sampler->GetSamplingMat(), NORM_2, a->norm_max_samples, &Anorm)); 920 if (a->hara_verbose) PetscCall(PetscPrintf(PETSC_COMM_SELF, "Sampling uses max rank %d, tol %g (%g*%g), %s samples %d\n", a->max_rank, a->rtol * Anorm, a->rtol, Anorm, boundtocpu ? "CPU" : "GPU", a->bs)); 921 if (a->sf && !a->nativemult) a->sampler->SetIndexMap(a->hmatrix->u_basis_tree.index_map.size(), a->hmatrix->u_basis_tree.index_map.data()); 922 a->sampler->SetStream(handle->getMainStream()); 923 if (boundtocpu) { 924 a->sampler->SetGPUSampling(false); 925 hara(a->sampler, *a->hmatrix, a->max_rank, 10 /* TODO */, a->rtol * Anorm, a->bs, handle, verbose); 926 #if defined(PETSC_H2OPUS_USE_GPU) 927 } else { 928 a->sampler->SetGPUSampling(true); 929 hara(a->sampler, *a->hmatrix_gpu, a->max_rank, 10 /* TODO */, a->rtol * Anorm, a->bs, handle, verbose); 930 #endif 931 } 932 samplingdone = PETSC_TRUE; 933 } 934 } 935 #if defined(PETSC_H2OPUS_USE_GPU) 936 if (!boundtocpu) { 937 delete a->hmatrix; 938 delete a->dist_hmatrix; 939 a->hmatrix = NULL; 940 a->dist_hmatrix = NULL; 941 } 942 A->offloadmask = boundtocpu ? PETSC_OFFLOAD_CPU : PETSC_OFFLOAD_GPU; 943 #endif 944 PetscCall(PetscLogEventEnd(MAT_H2Opus_Build, A, 0, 0, 0)); 945 946 if (!a->s) a->s = 1.0; 947 A->assembled = PETSC_TRUE; 948 949 if (samplingdone) { 950 PetscBool check = a->check_construction; 951 PetscBool checke = PETSC_FALSE; 952 953 PetscCall(PetscOptionsGetBool(((PetscObject)A)->options, ((PetscObject)A)->prefix, "-mat_h2opus_check", &check, NULL)); 954 PetscCall(PetscOptionsGetBool(((PetscObject)A)->options, ((PetscObject)A)->prefix, "-mat_h2opus_check_explicit", &checke, NULL)); 955 if (check) { 956 Mat E, Ae; 957 PetscReal n1, ni, n2; 958 PetscReal n1A, niA, n2A; 959 void (*normfunc)(void); 960 961 Ae = a->sampler->GetSamplingMat(); 962 PetscCall(MatConvert(A, MATSHELL, MAT_INITIAL_MATRIX, &E)); 963 PetscCall(MatShellSetOperation(E, MATOP_NORM, (void (*)(void))MatNorm_H2OPUS)); 964 PetscCall(MatAXPY(E, -1.0, Ae, DIFFERENT_NONZERO_PATTERN)); 965 PetscCall(MatNorm(E, NORM_1, &n1)); 966 PetscCall(MatNorm(E, NORM_INFINITY, &ni)); 967 PetscCall(MatNorm(E, NORM_2, &n2)); 968 if (checke) { 969 Mat eA, eE, eAe; 970 971 PetscCall(MatComputeOperator(A, MATAIJ, &eA)); 972 PetscCall(MatComputeOperator(E, MATAIJ, &eE)); 973 PetscCall(MatComputeOperator(Ae, MATAIJ, &eAe)); 974 PetscCall(MatFilter(eA, PETSC_SMALL, PETSC_FALSE, PETSC_FALSE)); 975 PetscCall(MatFilter(eE, PETSC_SMALL, PETSC_FALSE, PETSC_FALSE)); 976 PetscCall(MatFilter(eAe, PETSC_SMALL, PETSC_FALSE, PETSC_FALSE)); 977 PetscCall(PetscObjectSetName((PetscObject)eA, "H2Mat")); 978 PetscCall(MatView(eA, NULL)); 979 PetscCall(PetscObjectSetName((PetscObject)eAe, "S")); 980 PetscCall(MatView(eAe, NULL)); 981 PetscCall(PetscObjectSetName((PetscObject)eE, "H2Mat - S")); 982 PetscCall(MatView(eE, NULL)); 983 PetscCall(MatDestroy(&eA)); 984 PetscCall(MatDestroy(&eE)); 985 PetscCall(MatDestroy(&eAe)); 986 } 987 988 PetscCall(MatGetOperation(Ae, MATOP_NORM, &normfunc)); 989 PetscCall(MatSetOperation(Ae, MATOP_NORM, (void (*)(void))MatNorm_H2OPUS)); 990 PetscCall(MatNorm(Ae, NORM_1, &n1A)); 991 PetscCall(MatNorm(Ae, NORM_INFINITY, &niA)); 992 PetscCall(MatNorm(Ae, NORM_2, &n2A)); 993 n1A = PetscMax(n1A, PETSC_SMALL); 994 n2A = PetscMax(n2A, PETSC_SMALL); 995 niA = PetscMax(niA, PETSC_SMALL); 996 PetscCall(MatSetOperation(Ae, MATOP_NORM, normfunc)); 997 PetscCall(PetscPrintf(PetscObjectComm((PetscObject)A), "MATH2OPUS construction errors: NORM_1 %g, NORM_INFINITY %g, NORM_2 %g (%g %g %g)\n", (double)n1, (double)ni, (double)n2, (double)(n1 / n1A), (double)(ni / niA), (double)(n2 / n2A))); 998 PetscCall(MatDestroy(&E)); 999 } 1000 a->sampler->SetSamplingMat(NULL); 1001 } 1002 PetscFunctionReturn(PETSC_SUCCESS); 1003 } 1004 1005 static PetscErrorCode MatZeroEntries_H2OPUS(Mat A) 1006 { 1007 PetscMPIInt size; 1008 Mat_H2OPUS *a = (Mat_H2OPUS *)A->data; 1009 1010 PetscFunctionBegin; 1011 PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 1012 PetscCheck(size <= 1, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not yet supported"); 1013 a->hmatrix->clearData(); 1014 #if defined(PETSC_H2OPUS_USE_GPU) 1015 if (a->hmatrix_gpu) a->hmatrix_gpu->clearData(); 1016 #endif 1017 PetscFunctionReturn(PETSC_SUCCESS); 1018 } 1019 1020 static PetscErrorCode MatDuplicate_H2OPUS(Mat B, MatDuplicateOption op, Mat *nA) 1021 { 1022 Mat A; 1023 Mat_H2OPUS *a, *b = (Mat_H2OPUS *)B->data; 1024 #if defined(PETSC_H2OPUS_USE_GPU) 1025 PetscBool iscpu = PETSC_FALSE; 1026 #else 1027 PetscBool iscpu = PETSC_TRUE; 1028 #endif 1029 MPI_Comm comm; 1030 1031 PetscFunctionBegin; 1032 PetscCall(PetscObjectGetComm((PetscObject)B, &comm)); 1033 PetscCall(MatCreate(comm, &A)); 1034 PetscCall(MatSetSizes(A, B->rmap->n, B->cmap->n, B->rmap->N, B->cmap->N)); 1035 PetscCall(MatSetType(A, MATH2OPUS)); 1036 PetscCall(MatPropagateSymmetryOptions(B, A)); 1037 a = (Mat_H2OPUS *)A->data; 1038 1039 a->eta = b->eta; 1040 a->leafsize = b->leafsize; 1041 a->basisord = b->basisord; 1042 a->max_rank = b->max_rank; 1043 a->bs = b->bs; 1044 a->rtol = b->rtol; 1045 a->norm_max_samples = b->norm_max_samples; 1046 if (op == MAT_COPY_VALUES) a->s = b->s; 1047 1048 a->ptcloud = new PetscPointCloud<PetscReal>(*b->ptcloud); 1049 if (op == MAT_COPY_VALUES && b->kernel) a->kernel = new PetscFunctionGenerator<PetscScalar>(*b->kernel); 1050 1051 #if defined(H2OPUS_USE_MPI) 1052 if (b->dist_hmatrix) a->dist_hmatrix = new DistributedHMatrix(*b->dist_hmatrix); 1053 #if defined(PETSC_H2OPUS_USE_GPU) 1054 if (b->dist_hmatrix_gpu) a->dist_hmatrix_gpu = new DistributedHMatrix_GPU(*b->dist_hmatrix_gpu); 1055 #endif 1056 #endif 1057 if (b->hmatrix) { 1058 a->hmatrix = new HMatrix(*b->hmatrix); 1059 if (op == MAT_DO_NOT_COPY_VALUES) a->hmatrix->clearData(); 1060 } 1061 #if defined(PETSC_H2OPUS_USE_GPU) 1062 if (b->hmatrix_gpu) { 1063 a->hmatrix_gpu = new HMatrix_GPU(*b->hmatrix_gpu); 1064 if (op == MAT_DO_NOT_COPY_VALUES) a->hmatrix_gpu->clearData(); 1065 } 1066 #endif 1067 if (b->sf) { 1068 PetscCall(PetscObjectReference((PetscObject)b->sf)); 1069 a->sf = b->sf; 1070 } 1071 if (b->h2opus_indexmap) { 1072 PetscCall(PetscObjectReference((PetscObject)b->h2opus_indexmap)); 1073 a->h2opus_indexmap = b->h2opus_indexmap; 1074 } 1075 1076 PetscCall(MatSetUp(A)); 1077 PetscCall(MatSetUpMultiply_H2OPUS(A)); 1078 if (op == MAT_COPY_VALUES) { 1079 A->assembled = PETSC_TRUE; 1080 a->orthogonal = b->orthogonal; 1081 #if defined(PETSC_H2OPUS_USE_GPU) 1082 A->offloadmask = B->offloadmask; 1083 #endif 1084 } 1085 #if defined(PETSC_H2OPUS_USE_GPU) 1086 iscpu = B->boundtocpu; 1087 #endif 1088 PetscCall(MatBindToCPU(A, iscpu)); 1089 1090 *nA = A; 1091 PetscFunctionReturn(PETSC_SUCCESS); 1092 } 1093 1094 static PetscErrorCode MatView_H2OPUS(Mat A, PetscViewer view) 1095 { 1096 Mat_H2OPUS *h2opus = (Mat_H2OPUS *)A->data; 1097 PetscBool isascii, vieweps; 1098 PetscMPIInt size; 1099 PetscViewerFormat format; 1100 1101 PetscFunctionBegin; 1102 PetscCall(PetscObjectTypeCompare((PetscObject)view, PETSCVIEWERASCII, &isascii)); 1103 PetscCall(PetscViewerGetFormat(view, &format)); 1104 PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 1105 if (isascii) { 1106 if (format == PETSC_VIEWER_ASCII_MATLAB) { 1107 if (size == 1) { 1108 FILE *fp; 1109 PetscCall(PetscViewerASCIIGetPointer(view, &fp)); 1110 dumpHMatrix(*h2opus->hmatrix, 6, fp); 1111 } 1112 } else { 1113 PetscCall(PetscViewerASCIIPrintf(view, " H-Matrix constructed from %s\n", h2opus->kernel ? "Kernel" : "Mat")); 1114 PetscCall(PetscViewerASCIIPrintf(view, " PointCloud dim %" PetscInt_FMT "\n", h2opus->ptcloud ? h2opus->ptcloud->getDimension() : 0)); 1115 PetscCall(PetscViewerASCIIPrintf(view, " Admissibility parameters: leaf size %" PetscInt_FMT ", eta %g\n", h2opus->leafsize, (double)h2opus->eta)); 1116 if (!h2opus->kernel) { 1117 PetscCall(PetscViewerASCIIPrintf(view, " Sampling parameters: max_rank %" PetscInt_FMT ", samples %" PetscInt_FMT ", tolerance %g\n", h2opus->max_rank, h2opus->bs, (double)h2opus->rtol)); 1118 } else { 1119 PetscCall(PetscViewerASCIIPrintf(view, " Off-diagonal blocks approximation order %" PetscInt_FMT "\n", h2opus->basisord)); 1120 } 1121 PetscCall(PetscViewerASCIIPrintf(view, " Number of samples for norms %" PetscInt_FMT "\n", h2opus->norm_max_samples)); 1122 if (size == 1) { 1123 double dense_mem_cpu = h2opus->hmatrix ? h2opus->hmatrix->getDenseMemoryUsage() : 0; 1124 double low_rank_cpu = h2opus->hmatrix ? h2opus->hmatrix->getLowRankMemoryUsage() : 0; 1125 #if defined(PETSC_HAVE_CUDA) 1126 double dense_mem_gpu = h2opus->hmatrix_gpu ? h2opus->hmatrix_gpu->getDenseMemoryUsage() : 0; 1127 double low_rank_gpu = h2opus->hmatrix_gpu ? h2opus->hmatrix_gpu->getLowRankMemoryUsage() : 0; 1128 #endif 1129 PetscCall(PetscViewerASCIIPrintf(view, " Memory consumption GB (CPU): %g (dense) %g (low rank) %g (total)\n", dense_mem_cpu, low_rank_cpu, low_rank_cpu + dense_mem_cpu)); 1130 #if defined(PETSC_HAVE_CUDA) 1131 PetscCall(PetscViewerASCIIPrintf(view, " Memory consumption GB (GPU): %g (dense) %g (low rank) %g (total)\n", dense_mem_gpu, low_rank_gpu, low_rank_gpu + dense_mem_gpu)); 1132 #endif 1133 } else { 1134 #if defined(PETSC_HAVE_CUDA) 1135 double matrix_mem[4] = {0., 0., 0., 0.}; 1136 PetscMPIInt rsize = 4; 1137 #else 1138 double matrix_mem[2] = {0., 0.}; 1139 PetscMPIInt rsize = 2; 1140 #endif 1141 #if defined(H2OPUS_USE_MPI) 1142 matrix_mem[0] = h2opus->dist_hmatrix ? h2opus->dist_hmatrix->getLocalDenseMemoryUsage() : 0; 1143 matrix_mem[1] = h2opus->dist_hmatrix ? h2opus->dist_hmatrix->getLocalLowRankMemoryUsage() : 0; 1144 #if defined(PETSC_HAVE_CUDA) 1145 matrix_mem[2] = h2opus->dist_hmatrix_gpu ? h2opus->dist_hmatrix_gpu->getLocalDenseMemoryUsage() : 0; 1146 matrix_mem[3] = h2opus->dist_hmatrix_gpu ? h2opus->dist_hmatrix_gpu->getLocalLowRankMemoryUsage() : 0; 1147 #endif 1148 #endif 1149 PetscCall(MPIU_Allreduce(MPI_IN_PLACE, matrix_mem, rsize, MPI_DOUBLE_PRECISION, MPI_SUM, PetscObjectComm((PetscObject)A))); 1150 PetscCall(PetscViewerASCIIPrintf(view, " Memory consumption GB (CPU): %g (dense) %g (low rank) %g (total)\n", matrix_mem[0], matrix_mem[1], matrix_mem[0] + matrix_mem[1])); 1151 #if defined(PETSC_HAVE_CUDA) 1152 PetscCall(PetscViewerASCIIPrintf(view, " Memory consumption GB (GPU): %g (dense) %g (low rank) %g (total)\n", matrix_mem[2], matrix_mem[3], matrix_mem[2] + matrix_mem[3])); 1153 #endif 1154 } 1155 } 1156 } 1157 vieweps = PETSC_FALSE; 1158 PetscCall(PetscOptionsGetBool(((PetscObject)A)->options, ((PetscObject)A)->prefix, "-mat_h2opus_vieweps", &vieweps, NULL)); 1159 if (vieweps) { 1160 char filename[256]; 1161 const char *name; 1162 1163 PetscCall(PetscObjectGetName((PetscObject)A, &name)); 1164 PetscCall(PetscSNPrintf(filename, sizeof(filename), "%s_structure.eps", name)); 1165 PetscCall(PetscOptionsGetString(((PetscObject)A)->options, ((PetscObject)A)->prefix, "-mat_h2opus_vieweps_filename", filename, sizeof(filename), NULL)); 1166 outputEps(*h2opus->hmatrix, filename); 1167 } 1168 PetscFunctionReturn(PETSC_SUCCESS); 1169 } 1170 1171 static PetscErrorCode MatH2OpusSetCoords_H2OPUS(Mat A, PetscInt spacedim, const PetscReal coords[], PetscBool cdist, MatH2OpusKernelFn *kernel, void *kernelctx) 1172 { 1173 Mat_H2OPUS *h2opus = (Mat_H2OPUS *)A->data; 1174 PetscReal *gcoords; 1175 PetscInt N; 1176 MPI_Comm comm; 1177 PetscMPIInt size; 1178 PetscBool cong; 1179 1180 PetscFunctionBegin; 1181 PetscCall(PetscLayoutSetUp(A->rmap)); 1182 PetscCall(PetscLayoutSetUp(A->cmap)); 1183 PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 1184 PetscCall(MatHasCongruentLayouts(A, &cong)); 1185 PetscCheck(cong, comm, PETSC_ERR_SUP, "Only for square matrices with congruent layouts"); 1186 N = A->rmap->N; 1187 PetscCallMPI(MPI_Comm_size(comm, &size)); 1188 if (spacedim > 0 && size > 1 && cdist) { 1189 PetscSF sf; 1190 MPI_Datatype dtype; 1191 1192 PetscCallMPI(MPI_Type_contiguous(spacedim, MPIU_REAL, &dtype)); 1193 PetscCallMPI(MPI_Type_commit(&dtype)); 1194 1195 PetscCall(PetscSFCreate(comm, &sf)); 1196 PetscCall(PetscSFSetGraphWithPattern(sf, A->rmap, PETSCSF_PATTERN_ALLGATHER)); 1197 PetscCall(PetscMalloc1(spacedim * N, &gcoords)); 1198 PetscCall(PetscSFBcastBegin(sf, dtype, coords, gcoords, MPI_REPLACE)); 1199 PetscCall(PetscSFBcastEnd(sf, dtype, coords, gcoords, MPI_REPLACE)); 1200 PetscCall(PetscSFDestroy(&sf)); 1201 PetscCallMPI(MPI_Type_free(&dtype)); 1202 } else gcoords = (PetscReal *)coords; 1203 1204 delete h2opus->ptcloud; 1205 delete h2opus->kernel; 1206 h2opus->ptcloud = new PetscPointCloud<PetscReal>(spacedim, N, gcoords); 1207 if (kernel) h2opus->kernel = new PetscFunctionGenerator<PetscScalar>(kernel, spacedim, kernelctx); 1208 if (gcoords != coords) PetscCall(PetscFree(gcoords)); 1209 A->preallocated = PETSC_TRUE; 1210 PetscFunctionReturn(PETSC_SUCCESS); 1211 } 1212 1213 #if defined(PETSC_H2OPUS_USE_GPU) 1214 static PetscErrorCode MatBindToCPU_H2OPUS(Mat A, PetscBool flg) 1215 { 1216 PetscMPIInt size; 1217 Mat_H2OPUS *a = (Mat_H2OPUS *)A->data; 1218 1219 PetscFunctionBegin; 1220 PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 1221 if (flg && A->offloadmask == PETSC_OFFLOAD_GPU) { 1222 if (size > 1) { 1223 PetscCheck(a->dist_hmatrix_gpu, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing GPU matrix"); 1224 #if defined(H2OPUS_USE_MPI) 1225 if (!a->dist_hmatrix) a->dist_hmatrix = new DistributedHMatrix(*a->dist_hmatrix_gpu); 1226 else *a->dist_hmatrix = *a->dist_hmatrix_gpu; 1227 #endif 1228 } else { 1229 PetscCheck(a->hmatrix_gpu, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing GPU matrix"); 1230 if (!a->hmatrix) a->hmatrix = new HMatrix(*a->hmatrix_gpu); 1231 else *a->hmatrix = *a->hmatrix_gpu; 1232 } 1233 delete a->hmatrix_gpu; 1234 delete a->dist_hmatrix_gpu; 1235 a->hmatrix_gpu = NULL; 1236 a->dist_hmatrix_gpu = NULL; 1237 A->offloadmask = PETSC_OFFLOAD_CPU; 1238 } else if (!flg && A->offloadmask == PETSC_OFFLOAD_CPU) { 1239 if (size > 1) { 1240 PetscCheck(a->dist_hmatrix, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing CPU matrix"); 1241 #if defined(H2OPUS_USE_MPI) 1242 if (!a->dist_hmatrix_gpu) a->dist_hmatrix_gpu = new DistributedHMatrix_GPU(*a->dist_hmatrix); 1243 else *a->dist_hmatrix_gpu = *a->dist_hmatrix; 1244 #endif 1245 } else { 1246 PetscCheck(a->hmatrix, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing CPU matrix"); 1247 if (!a->hmatrix_gpu) a->hmatrix_gpu = new HMatrix_GPU(*a->hmatrix); 1248 else *a->hmatrix_gpu = *a->hmatrix; 1249 } 1250 delete a->hmatrix; 1251 delete a->dist_hmatrix; 1252 a->hmatrix = NULL; 1253 a->dist_hmatrix = NULL; 1254 A->offloadmask = PETSC_OFFLOAD_GPU; 1255 } 1256 PetscCall(PetscFree(A->defaultvectype)); 1257 if (!flg) { 1258 PetscCall(PetscStrallocpy(VECCUDA, &A->defaultvectype)); 1259 } else { 1260 PetscCall(PetscStrallocpy(VECSTANDARD, &A->defaultvectype)); 1261 } 1262 A->boundtocpu = flg; 1263 PetscFunctionReturn(PETSC_SUCCESS); 1264 } 1265 #endif 1266 1267 /*MC 1268 MATH2OPUS = "h2opus" - A matrix type for hierarchical matrices using the H2Opus package {cite}`zampinibouakaramturkiyyahkniokeyes2022`. 1269 1270 Options Database Key: 1271 . -mat_type h2opus - matrix type to "h2opus" 1272 1273 Level: beginner 1274 1275 Notes: 1276 H2Opus implements hierarchical matrices in the $H^2$ flavour. It supports CPU or NVIDIA GPUs. 1277 1278 For CPU only builds, use `./configure --download-h2opus --download-thrust` to install PETSc to use H2Opus. 1279 In order to run on NVIDIA GPUs, use `./configure --download-h2opus --download-magma --download-kblas`. 1280 1281 .seealso: [](ch_matrices), `Mat`, `MATH2OPUS`, `MATHTOOL`, `MATDENSE`, `MatCreateH2OpusFromKernel()`, `MatCreateH2OpusFromMat()` 1282 M*/ 1283 PETSC_EXTERN PetscErrorCode MatCreate_H2OPUS(Mat A) 1284 { 1285 Mat_H2OPUS *a; 1286 PetscMPIInt size; 1287 1288 PetscFunctionBegin; 1289 #if defined(PETSC_H2OPUS_USE_GPU) 1290 PetscCall(PetscDeviceInitialize(PETSC_DEVICE_CUDA)); 1291 #endif 1292 PetscCall(PetscNew(&a)); 1293 A->data = (void *)a; 1294 1295 a->eta = 0.9; 1296 a->leafsize = 32; 1297 a->basisord = 4; 1298 a->max_rank = 64; 1299 a->bs = 32; 1300 a->rtol = 1.e-4; 1301 a->s = 1.0; 1302 a->norm_max_samples = 10; 1303 a->resize = PETSC_TRUE; /* reallocate after compression */ 1304 #if defined(H2OPUS_USE_MPI) 1305 h2opusCreateDistributedHandleComm(&a->handle, PetscObjectComm((PetscObject)A)); 1306 #else 1307 h2opusCreateHandle(&a->handle); 1308 #endif 1309 PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 1310 PetscCall(PetscObjectChangeTypeName((PetscObject)A, MATH2OPUS)); 1311 PetscCall(PetscMemzero(A->ops, sizeof(struct _MatOps))); 1312 1313 A->ops->destroy = MatDestroy_H2OPUS; 1314 A->ops->view = MatView_H2OPUS; 1315 A->ops->assemblyend = MatAssemblyEnd_H2OPUS; 1316 A->ops->mult = MatMult_H2OPUS; 1317 A->ops->multtranspose = MatMultTranspose_H2OPUS; 1318 A->ops->multadd = MatMultAdd_H2OPUS; 1319 A->ops->multtransposeadd = MatMultTransposeAdd_H2OPUS; 1320 A->ops->scale = MatScale_H2OPUS; 1321 A->ops->duplicate = MatDuplicate_H2OPUS; 1322 A->ops->setfromoptions = MatSetFromOptions_H2OPUS; 1323 A->ops->norm = MatNorm_H2OPUS; 1324 A->ops->zeroentries = MatZeroEntries_H2OPUS; 1325 #if defined(PETSC_H2OPUS_USE_GPU) 1326 A->ops->bindtocpu = MatBindToCPU_H2OPUS; 1327 #endif 1328 1329 PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatProductSetFromOptions_h2opus_seqdense_C", MatProductSetFromOptions_H2OPUS)); 1330 PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatProductSetFromOptions_h2opus_seqdensecuda_C", MatProductSetFromOptions_H2OPUS)); 1331 PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatProductSetFromOptions_h2opus_mpidense_C", MatProductSetFromOptions_H2OPUS)); 1332 PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatProductSetFromOptions_h2opus_mpidensecuda_C", MatProductSetFromOptions_H2OPUS)); 1333 #if defined(PETSC_H2OPUS_USE_GPU) 1334 PetscCall(PetscFree(A->defaultvectype)); 1335 PetscCall(PetscStrallocpy(VECCUDA, &A->defaultvectype)); 1336 #endif 1337 PetscFunctionReturn(PETSC_SUCCESS); 1338 } 1339 1340 /*@C 1341 MatH2OpusOrthogonalize - Orthogonalize the basis tree of a hierarchical matrix. 1342 1343 Input Parameter: 1344 . A - the matrix 1345 1346 Level: intermediate 1347 1348 .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MATH2OPUS`, `MatCreateH2OpusFromMat()`, `MatCreateH2OpusFromKernel()`, `MatH2OpusCompress()` 1349 @*/ 1350 PetscErrorCode MatH2OpusOrthogonalize(Mat A) 1351 { 1352 PetscBool ish2opus; 1353 Mat_H2OPUS *a = (Mat_H2OPUS *)A->data; 1354 PetscMPIInt size; 1355 PetscBool boundtocpu = PETSC_TRUE; 1356 1357 PetscFunctionBegin; 1358 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 1359 PetscValidType(A, 1); 1360 PetscCall(PetscObjectTypeCompare((PetscObject)A, MATH2OPUS, &ish2opus)); 1361 if (!ish2opus) PetscFunctionReturn(PETSC_SUCCESS); 1362 if (a->orthogonal) PetscFunctionReturn(PETSC_SUCCESS); 1363 HLibProfile::clear(); 1364 PetscCall(PetscLogEventBegin(MAT_H2Opus_Orthog, A, 0, 0, 0)); 1365 #if defined(PETSC_H2OPUS_USE_GPU) 1366 boundtocpu = A->boundtocpu; 1367 #endif 1368 PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 1369 if (size > 1) { 1370 if (boundtocpu) { 1371 PetscCheck(a->dist_hmatrix, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing CPU matrix"); 1372 #if defined(H2OPUS_USE_MPI) 1373 distributed_horthog(*a->dist_hmatrix, a->handle); 1374 #endif 1375 #if defined(PETSC_H2OPUS_USE_GPU) 1376 A->offloadmask = PETSC_OFFLOAD_CPU; 1377 } else { 1378 PetscCheck(a->dist_hmatrix_gpu, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing GPU matrix"); 1379 PetscCall(PetscLogGpuTimeBegin()); 1380 #if defined(H2OPUS_USE_MPI) 1381 distributed_horthog(*a->dist_hmatrix_gpu, a->handle); 1382 #endif 1383 PetscCall(PetscLogGpuTimeEnd()); 1384 #endif 1385 } 1386 } else { 1387 #if defined(H2OPUS_USE_MPI) 1388 h2opusHandle_t handle = a->handle->handle; 1389 #else 1390 h2opusHandle_t handle = a->handle; 1391 #endif 1392 if (boundtocpu) { 1393 PetscCheck(a->hmatrix, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing CPU matrix"); 1394 horthog(*a->hmatrix, handle); 1395 #if defined(PETSC_H2OPUS_USE_GPU) 1396 A->offloadmask = PETSC_OFFLOAD_CPU; 1397 } else { 1398 PetscCheck(a->hmatrix_gpu, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing GPU matrix"); 1399 PetscCall(PetscLogGpuTimeBegin()); 1400 horthog(*a->hmatrix_gpu, handle); 1401 PetscCall(PetscLogGpuTimeEnd()); 1402 #endif 1403 } 1404 } 1405 a->orthogonal = PETSC_TRUE; 1406 { /* log flops */ 1407 double gops, time, perf, dev; 1408 HLibProfile::getHorthogPerf(gops, time, perf, dev); 1409 #if defined(PETSC_H2OPUS_USE_GPU) 1410 if (boundtocpu) { 1411 PetscCall(PetscLogFlops(1e9 * gops)); 1412 } else { 1413 PetscCall(PetscLogGpuFlops(1e9 * gops)); 1414 } 1415 #else 1416 PetscCall(PetscLogFlops(1e9 * gops)); 1417 #endif 1418 } 1419 PetscCall(PetscLogEventEnd(MAT_H2Opus_Orthog, A, 0, 0, 0)); 1420 PetscFunctionReturn(PETSC_SUCCESS); 1421 } 1422 1423 /*@C 1424 MatH2OpusCompress - Compress a hierarchical matrix. 1425 1426 Input Parameters: 1427 + A - the matrix 1428 - tol - the absolute truncation threshold 1429 1430 Level: intermediate 1431 1432 .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MATH2OPUS`, `MatCreateH2OpusFromMat()`, `MatCreateH2OpusFromKernel()`, `MatH2OpusOrthogonalize()` 1433 @*/ 1434 PetscErrorCode MatH2OpusCompress(Mat A, PetscReal tol) 1435 { 1436 PetscBool ish2opus; 1437 Mat_H2OPUS *a = (Mat_H2OPUS *)A->data; 1438 PetscMPIInt size; 1439 PetscBool boundtocpu = PETSC_TRUE; 1440 1441 PetscFunctionBegin; 1442 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 1443 PetscValidType(A, 1); 1444 PetscValidLogicalCollectiveReal(A, tol, 2); 1445 PetscCall(PetscObjectTypeCompare((PetscObject)A, MATH2OPUS, &ish2opus)); 1446 if (!ish2opus || tol <= 0.0) PetscFunctionReturn(PETSC_SUCCESS); 1447 PetscCall(MatH2OpusOrthogonalize(A)); 1448 HLibProfile::clear(); 1449 PetscCall(PetscLogEventBegin(MAT_H2Opus_Compress, A, 0, 0, 0)); 1450 #if defined(PETSC_H2OPUS_USE_GPU) 1451 boundtocpu = A->boundtocpu; 1452 #endif 1453 PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 1454 if (size > 1) { 1455 if (boundtocpu) { 1456 PetscCheck(a->dist_hmatrix, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing CPU matrix"); 1457 #if defined(H2OPUS_USE_MPI) 1458 distributed_hcompress(*a->dist_hmatrix, tol, a->handle); 1459 if (a->resize) { 1460 DistributedHMatrix *dist_hmatrix = new DistributedHMatrix(*a->dist_hmatrix); 1461 delete a->dist_hmatrix; 1462 a->dist_hmatrix = dist_hmatrix; 1463 } 1464 #endif 1465 #if defined(PETSC_H2OPUS_USE_GPU) 1466 A->offloadmask = PETSC_OFFLOAD_CPU; 1467 } else { 1468 PetscCheck(a->dist_hmatrix_gpu, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing GPU matrix"); 1469 PetscCall(PetscLogGpuTimeBegin()); 1470 #if defined(H2OPUS_USE_MPI) 1471 distributed_hcompress(*a->dist_hmatrix_gpu, tol, a->handle); 1472 1473 if (a->resize) { 1474 DistributedHMatrix_GPU *dist_hmatrix_gpu = new DistributedHMatrix_GPU(*a->dist_hmatrix_gpu); 1475 delete a->dist_hmatrix_gpu; 1476 a->dist_hmatrix_gpu = dist_hmatrix_gpu; 1477 } 1478 #endif 1479 PetscCall(PetscLogGpuTimeEnd()); 1480 #endif 1481 } 1482 } else { 1483 #if defined(H2OPUS_USE_MPI) 1484 h2opusHandle_t handle = a->handle->handle; 1485 #else 1486 h2opusHandle_t handle = a->handle; 1487 #endif 1488 if (boundtocpu) { 1489 PetscCheck(a->hmatrix, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing CPU matrix"); 1490 hcompress(*a->hmatrix, tol, handle); 1491 1492 if (a->resize) { 1493 HMatrix *hmatrix = new HMatrix(*a->hmatrix); 1494 delete a->hmatrix; 1495 a->hmatrix = hmatrix; 1496 } 1497 #if defined(PETSC_H2OPUS_USE_GPU) 1498 A->offloadmask = PETSC_OFFLOAD_CPU; 1499 } else { 1500 PetscCheck(a->hmatrix_gpu, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing GPU matrix"); 1501 PetscCall(PetscLogGpuTimeBegin()); 1502 hcompress(*a->hmatrix_gpu, tol, handle); 1503 PetscCall(PetscLogGpuTimeEnd()); 1504 1505 if (a->resize) { 1506 HMatrix_GPU *hmatrix_gpu = new HMatrix_GPU(*a->hmatrix_gpu); 1507 delete a->hmatrix_gpu; 1508 a->hmatrix_gpu = hmatrix_gpu; 1509 } 1510 #endif 1511 } 1512 } 1513 { /* log flops */ 1514 double gops, time, perf, dev; 1515 HLibProfile::getHcompressPerf(gops, time, perf, dev); 1516 #if defined(PETSC_H2OPUS_USE_GPU) 1517 if (boundtocpu) { 1518 PetscCall(PetscLogFlops(1e9 * gops)); 1519 } else { 1520 PetscCall(PetscLogGpuFlops(1e9 * gops)); 1521 } 1522 #else 1523 PetscCall(PetscLogFlops(1e9 * gops)); 1524 #endif 1525 } 1526 PetscCall(PetscLogEventEnd(MAT_H2Opus_Compress, A, 0, 0, 0)); 1527 PetscFunctionReturn(PETSC_SUCCESS); 1528 } 1529 1530 /*@C 1531 MatH2OpusSetSamplingMat - Set a matrix to be sampled from matrix-vector products on another matrix to construct a hierarchical matrix. 1532 1533 Input Parameters: 1534 + A - the hierarchical matrix 1535 . B - the matrix to be sampled 1536 . bs - maximum number of samples to be taken concurrently 1537 - tol - relative tolerance for construction 1538 1539 Level: intermediate 1540 1541 Notes: 1542 You need to call `MatAssemblyBegin()` and `MatAssemblyEnd()` to update the hierarchical matrix. 1543 1544 .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MATH2OPUS`, `MatCreateH2OpusFromMat()`, `MatCreateH2OpusFromKernel()`, `MatH2OpusCompress()`, `MatH2OpusOrthogonalize()` 1545 @*/ 1546 PetscErrorCode MatH2OpusSetSamplingMat(Mat A, Mat B, PetscInt bs, PetscReal tol) 1547 { 1548 PetscBool ish2opus; 1549 1550 PetscFunctionBegin; 1551 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 1552 PetscValidType(A, 1); 1553 if (B) PetscValidHeaderSpecific(B, MAT_CLASSID, 2); 1554 PetscValidLogicalCollectiveInt(A, bs, 3); 1555 PetscValidLogicalCollectiveReal(A, tol, 4); 1556 PetscCall(PetscObjectTypeCompare((PetscObject)A, MATH2OPUS, &ish2opus)); 1557 if (ish2opus) { 1558 Mat_H2OPUS *a = (Mat_H2OPUS *)A->data; 1559 1560 if (!a->sampler) a->sampler = new PetscMatrixSampler(); 1561 a->sampler->SetSamplingMat(B); 1562 if (bs > 0) a->bs = bs; 1563 if (tol > 0.) a->rtol = tol; 1564 delete a->kernel; 1565 } 1566 PetscFunctionReturn(PETSC_SUCCESS); 1567 } 1568 1569 /*@C 1570 MatCreateH2OpusFromKernel - Creates a `MATH2OPUS` from a user-supplied kernel. 1571 1572 Input Parameters: 1573 + comm - MPI communicator 1574 . m - number of local rows (or `PETSC_DECIDE` to have calculated if `M` is given) 1575 . n - number of local columns (or `PETSC_DECIDE` to have calculated if `N` is given) 1576 . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 1577 . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 1578 . spacedim - dimension of the space coordinates 1579 . coords - coordinates of the points 1580 . cdist - whether or not coordinates are distributed 1581 . kernel - computational kernel (or `NULL`) 1582 . kernelctx - kernel context 1583 . eta - admissibility condition tolerance 1584 . leafsize - leaf size in cluster tree 1585 - basisord - approximation order for Chebychev interpolation of low-rank blocks 1586 1587 Output Parameter: 1588 . nA - matrix 1589 1590 Options Database Keys: 1591 + -mat_h2opus_leafsize <`PetscInt`> - Leaf size of cluster tree 1592 . -mat_h2opus_eta <`PetscReal`> - Admissibility condition tolerance 1593 . -mat_h2opus_order <`PetscInt`> - Chebychev approximation order 1594 - -mat_h2opus_normsamples <`PetscInt`> - Maximum number of samples to be used when estimating norms 1595 1596 Level: intermediate 1597 1598 .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MATH2OPUS`, `MatCreateH2OpusFromMat()` 1599 @*/ 1600 PetscErrorCode MatCreateH2OpusFromKernel(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt spacedim, const PetscReal coords[], PetscBool cdist, MatH2OpusKernelFn *kernel, void *kernelctx, PetscReal eta, PetscInt leafsize, PetscInt basisord, Mat *nA) 1601 { 1602 Mat A; 1603 Mat_H2OPUS *h2opus; 1604 #if defined(PETSC_H2OPUS_USE_GPU) 1605 PetscBool iscpu = PETSC_FALSE; 1606 #else 1607 PetscBool iscpu = PETSC_TRUE; 1608 #endif 1609 1610 PetscFunctionBegin; 1611 PetscCheck(m == n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Different row and column local sizes are not supported"); 1612 PetscCall(MatCreate(comm, &A)); 1613 PetscCall(MatSetSizes(A, m, n, M, N)); 1614 PetscCheck(M == N, comm, PETSC_ERR_SUP, "Rectangular matrices are not supported"); 1615 PetscCall(MatSetType(A, MATH2OPUS)); 1616 PetscCall(MatBindToCPU(A, iscpu)); 1617 PetscCall(MatH2OpusSetCoords_H2OPUS(A, spacedim, coords, cdist, kernel, kernelctx)); 1618 1619 h2opus = (Mat_H2OPUS *)A->data; 1620 if (eta > 0.) h2opus->eta = eta; 1621 if (leafsize > 0) h2opus->leafsize = leafsize; 1622 if (basisord > 0) h2opus->basisord = basisord; 1623 1624 *nA = A; 1625 PetscFunctionReturn(PETSC_SUCCESS); 1626 } 1627 1628 /*@C 1629 MatCreateH2OpusFromMat - Creates a `MATH2OPUS` sampling from a user-supplied operator. 1630 1631 Input Parameters: 1632 + B - the matrix to be sampled 1633 . spacedim - dimension of the space coordinates 1634 . coords - coordinates of the points 1635 . cdist - whether or not coordinates are distributed 1636 . eta - admissibility condition tolerance 1637 . leafsize - leaf size in cluster tree 1638 . maxrank - maximum rank allowed 1639 . bs - maximum number of samples to be taken concurrently 1640 - rtol - relative tolerance for construction 1641 1642 Output Parameter: 1643 . nA - matrix 1644 1645 Options Database Keys: 1646 + -mat_h2opus_leafsize <`PetscInt`> - Leaf size of cluster tree 1647 . -mat_h2opus_eta <`PetscReal`> - Admissibility condition tolerance 1648 . -mat_h2opus_maxrank <`PetscInt`> - Maximum rank when constructed from matvecs 1649 . -mat_h2opus_samples <`PetscInt`> - Maximum number of samples to be taken concurrently when constructing from matvecs 1650 . -mat_h2opus_rtol <`PetscReal`> - Relative tolerance for construction from sampling 1651 . -mat_h2opus_check <`PetscBool`> - Check error when constructing from sampling during MatAssemblyEnd() 1652 . -mat_h2opus_hara_verbose <`PetscBool`> - Verbose output from hara construction 1653 - -mat_h2opus_normsamples <`PetscInt`> - Maximum number of samples to be when estimating norms 1654 1655 Level: intermediate 1656 1657 Note: 1658 Not available in parallel 1659 1660 .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MATH2OPUS`, `MatCreateH2OpusFromKernel()` 1661 @*/ 1662 PetscErrorCode MatCreateH2OpusFromMat(Mat B, PetscInt spacedim, const PetscReal coords[], PetscBool cdist, PetscReal eta, PetscInt leafsize, PetscInt maxrank, PetscInt bs, PetscReal rtol, Mat *nA) 1663 { 1664 Mat A; 1665 Mat_H2OPUS *h2opus; 1666 MPI_Comm comm; 1667 PetscBool boundtocpu = PETSC_TRUE; 1668 1669 PetscFunctionBegin; 1670 PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 1671 PetscValidLogicalCollectiveInt(B, spacedim, 2); 1672 PetscValidLogicalCollectiveBool(B, cdist, 4); 1673 PetscValidLogicalCollectiveReal(B, eta, 5); 1674 PetscValidLogicalCollectiveInt(B, leafsize, 6); 1675 PetscValidLogicalCollectiveInt(B, maxrank, 7); 1676 PetscValidLogicalCollectiveInt(B, bs, 8); 1677 PetscValidLogicalCollectiveReal(B, rtol, 9); 1678 PetscAssertPointer(nA, 10); 1679 PetscCall(PetscObjectGetComm((PetscObject)B, &comm)); 1680 PetscCheck(B->rmap->n == B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Different row and column local sizes are not supported"); 1681 PetscCheck(B->rmap->N == B->cmap->N, comm, PETSC_ERR_SUP, "Rectangular matrices are not supported"); 1682 PetscCall(MatCreate(comm, &A)); 1683 PetscCall(MatSetSizes(A, B->rmap->n, B->cmap->n, B->rmap->N, B->cmap->N)); 1684 #if defined(PETSC_H2OPUS_USE_GPU) 1685 { 1686 VecType vtype; 1687 PetscBool isstd, iscuda, iskok; 1688 1689 PetscCall(MatGetVecType(B, &vtype)); 1690 PetscCall(PetscStrcmpAny(vtype, &isstd, VECSTANDARD, VECSEQ, VECMPI, "")); 1691 PetscCall(PetscStrcmpAny(vtype, &iscuda, VECCUDA, VECSEQCUDA, VECMPICUDA, "")); 1692 PetscCall(PetscStrcmpAny(vtype, &iskok, VECKOKKOS, VECSEQKOKKOS, VECMPIKOKKOS, "")); 1693 PetscCheck(isstd || iscuda || iskok, comm, PETSC_ERR_SUP, "Not for type %s", vtype); 1694 if (iscuda && !B->boundtocpu) boundtocpu = PETSC_FALSE; 1695 if (iskok && PetscDefined(HAVE_MACRO_KOKKOS_ENABLE_CUDA)) boundtocpu = PETSC_FALSE; 1696 } 1697 #endif 1698 PetscCall(MatSetType(A, MATH2OPUS)); 1699 PetscCall(MatBindToCPU(A, boundtocpu)); 1700 if (spacedim) PetscCall(MatH2OpusSetCoords_H2OPUS(A, spacedim, coords, cdist, NULL, NULL)); 1701 PetscCall(MatPropagateSymmetryOptions(B, A)); 1702 /* PetscCheck(A->symmetric,comm,PETSC_ERR_SUP,"Unsymmetric sampling does not work"); */ 1703 1704 h2opus = (Mat_H2OPUS *)A->data; 1705 h2opus->sampler = new PetscMatrixSampler(B); 1706 if (eta > 0.) h2opus->eta = eta; 1707 if (leafsize > 0) h2opus->leafsize = leafsize; 1708 if (maxrank > 0) h2opus->max_rank = maxrank; 1709 if (bs > 0) h2opus->bs = bs; 1710 if (rtol > 0.) h2opus->rtol = rtol; 1711 *nA = A; 1712 A->preallocated = PETSC_TRUE; 1713 PetscFunctionReturn(PETSC_SUCCESS); 1714 } 1715 1716 /*@C 1717 MatH2OpusGetIndexMap - Access reordering index set. 1718 1719 Input Parameter: 1720 . A - the matrix 1721 1722 Output Parameter: 1723 . indexmap - the index set for the reordering 1724 1725 Level: intermediate 1726 1727 .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MATH2OPUS`, `MatCreateH2OpusFromMat()`, `MatCreateH2OpusFromKernel()` 1728 @*/ 1729 PetscErrorCode MatH2OpusGetIndexMap(Mat A, IS *indexmap) 1730 { 1731 PetscBool ish2opus; 1732 Mat_H2OPUS *a = (Mat_H2OPUS *)A->data; 1733 1734 PetscFunctionBegin; 1735 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 1736 PetscValidType(A, 1); 1737 PetscAssertPointer(indexmap, 2); 1738 PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 1739 PetscCall(PetscObjectTypeCompare((PetscObject)A, MATH2OPUS, &ish2opus)); 1740 PetscCheck(ish2opus, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name); 1741 *indexmap = a->h2opus_indexmap; 1742 PetscFunctionReturn(PETSC_SUCCESS); 1743 } 1744 1745 /*@C 1746 MatH2OpusMapVec - Maps a vector between PETSc and H2Opus ordering 1747 1748 Input Parameters: 1749 + A - the matrix 1750 . nativetopetsc - if true, maps from H2Opus ordering to PETSc ordering. If false, applies the reverse map 1751 - in - the vector to be mapped 1752 1753 Output Parameter: 1754 . out - the newly created mapped vector 1755 1756 Level: intermediate 1757 1758 .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MATH2OPUS`, `MatCreateH2OpusFromMat()`, `MatCreateH2OpusFromKernel()` 1759 @*/ 1760 PetscErrorCode MatH2OpusMapVec(Mat A, PetscBool nativetopetsc, Vec in, Vec *out) 1761 { 1762 PetscBool ish2opus; 1763 Mat_H2OPUS *a = (Mat_H2OPUS *)A->data; 1764 PetscScalar *xin, *xout; 1765 PetscBool nm; 1766 1767 PetscFunctionBegin; 1768 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 1769 PetscValidType(A, 1); 1770 PetscValidLogicalCollectiveBool(A, nativetopetsc, 2); 1771 PetscValidHeaderSpecific(in, VEC_CLASSID, 3); 1772 PetscAssertPointer(out, 4); 1773 PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 1774 PetscCall(PetscObjectTypeCompare((PetscObject)A, MATH2OPUS, &ish2opus)); 1775 PetscCheck(ish2opus, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name); 1776 nm = a->nativemult; 1777 PetscCall(MatH2OpusSetNativeMult(A, (PetscBool)!nativetopetsc)); 1778 PetscCall(MatCreateVecs(A, out, NULL)); 1779 PetscCall(MatH2OpusSetNativeMult(A, nm)); 1780 if (!a->sf) { /* same ordering */ 1781 PetscCall(VecCopy(in, *out)); 1782 PetscFunctionReturn(PETSC_SUCCESS); 1783 } 1784 PetscCall(VecGetArrayRead(in, (const PetscScalar **)&xin)); 1785 PetscCall(VecGetArrayWrite(*out, &xout)); 1786 if (nativetopetsc) { 1787 PetscCall(PetscSFReduceBegin(a->sf, MPIU_SCALAR, xin, xout, MPI_REPLACE)); 1788 PetscCall(PetscSFReduceEnd(a->sf, MPIU_SCALAR, xin, xout, MPI_REPLACE)); 1789 } else { 1790 PetscCall(PetscSFBcastBegin(a->sf, MPIU_SCALAR, xin, xout, MPI_REPLACE)); 1791 PetscCall(PetscSFBcastEnd(a->sf, MPIU_SCALAR, xin, xout, MPI_REPLACE)); 1792 } 1793 PetscCall(VecRestoreArrayRead(in, (const PetscScalar **)&xin)); 1794 PetscCall(VecRestoreArrayWrite(*out, &xout)); 1795 PetscFunctionReturn(PETSC_SUCCESS); 1796 } 1797 1798 /*@C 1799 MatH2OpusLowRankUpdate - Perform a low-rank update of the form $ A = A + s * U * V^T $ 1800 1801 Input Parameters: 1802 + A - the hierarchical `MATH2OPUS` matrix 1803 . s - the scaling factor 1804 . U - the dense low-rank update matrix 1805 - V - (optional) the dense low-rank update matrix (if `NULL`, then `V` = `U` is assumed) 1806 1807 Note: 1808 The `U` and `V` matrices must be in `MATDENSE` dense format 1809 1810 Level: intermediate 1811 1812 .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MATH2OPUS`, `MatCreateH2OpusFromMat()`, `MatCreateH2OpusFromKernel()`, `MatH2OpusCompress()`, `MatH2OpusOrthogonalize()`, `MATDENSE` 1813 @*/ 1814 PetscErrorCode MatH2OpusLowRankUpdate(Mat A, Mat U, Mat V, PetscScalar s) 1815 { 1816 PetscBool flg; 1817 1818 PetscFunctionBegin; 1819 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 1820 PetscValidType(A, 1); 1821 PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 1822 PetscValidHeaderSpecific(U, MAT_CLASSID, 2); 1823 PetscCheckSameComm(A, 1, U, 2); 1824 if (V) { 1825 PetscValidHeaderSpecific(V, MAT_CLASSID, 3); 1826 PetscCheckSameComm(A, 1, V, 3); 1827 } 1828 PetscValidLogicalCollectiveScalar(A, s, 4); 1829 1830 if (!V) V = U; 1831 PetscCheck(U->cmap->N == V->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONGSTATE, "Non matching rank update %" PetscInt_FMT " != %" PetscInt_FMT, U->cmap->N, V->cmap->N); 1832 if (!U->cmap->N) PetscFunctionReturn(PETSC_SUCCESS); 1833 PetscCall(PetscLayoutCompare(U->rmap, A->rmap, &flg)); 1834 PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONGSTATE, "A and U must have the same row layout"); 1835 PetscCall(PetscLayoutCompare(V->rmap, A->cmap, &flg)); 1836 PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONGSTATE, "A column layout must match V row column layout"); 1837 PetscCall(PetscObjectTypeCompare((PetscObject)A, MATH2OPUS, &flg)); 1838 if (flg) { 1839 Mat_H2OPUS *a = (Mat_H2OPUS *)A->data; 1840 const PetscScalar *u, *v, *uu, *vv; 1841 PetscInt ldu, ldv; 1842 PetscMPIInt size; 1843 #if defined(H2OPUS_USE_MPI) 1844 h2opusHandle_t handle = a->handle->handle; 1845 #else 1846 h2opusHandle_t handle = a->handle; 1847 #endif 1848 PetscBool usesf = (PetscBool)(a->sf && !a->nativemult); 1849 PetscSF usf, vsf; 1850 1851 PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 1852 PetscCheck(size <= 1, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not yet implemented in parallel"); 1853 PetscCall(PetscLogEventBegin(MAT_H2Opus_LR, A, 0, 0, 0)); 1854 PetscCall(PetscObjectBaseTypeCompareAny((PetscObject)U, &flg, MATSEQDENSE, MATMPIDENSE, "")); 1855 PetscCheck(flg, PetscObjectComm((PetscObject)U), PETSC_ERR_SUP, "Not for U of type %s", ((PetscObject)U)->type_name); 1856 PetscCall(PetscObjectBaseTypeCompareAny((PetscObject)V, &flg, MATSEQDENSE, MATMPIDENSE, "")); 1857 PetscCheck(flg, PetscObjectComm((PetscObject)V), PETSC_ERR_SUP, "Not for V of type %s", ((PetscObject)V)->type_name); 1858 PetscCall(MatDenseGetLDA(U, &ldu)); 1859 PetscCall(MatDenseGetLDA(V, &ldv)); 1860 PetscCall(MatBoundToCPU(A, &flg)); 1861 if (usesf) { 1862 PetscInt n; 1863 1864 PetscCall(MatDenseGetH2OpusStridedSF(U, a->sf, &usf)); 1865 PetscCall(MatDenseGetH2OpusStridedSF(V, a->sf, &vsf)); 1866 PetscCall(MatH2OpusResizeBuffers_Private(A, U->cmap->N, V->cmap->N)); 1867 PetscCall(PetscSFGetGraph(a->sf, NULL, &n, NULL, NULL)); 1868 ldu = n; 1869 ldv = n; 1870 } 1871 if (flg) { 1872 PetscCheck(a->hmatrix, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing CPU matrix"); 1873 PetscCall(MatDenseGetArrayRead(U, &u)); 1874 PetscCall(MatDenseGetArrayRead(V, &v)); 1875 if (usesf) { 1876 vv = MatH2OpusGetThrustPointer(*a->yy); 1877 PetscCall(PetscSFBcastBegin(vsf, MPIU_SCALAR, v, (PetscScalar *)vv, MPI_REPLACE)); 1878 PetscCall(PetscSFBcastEnd(vsf, MPIU_SCALAR, v, (PetscScalar *)vv, MPI_REPLACE)); 1879 if (U != V) { 1880 uu = MatH2OpusGetThrustPointer(*a->xx); 1881 PetscCall(PetscSFBcastBegin(usf, MPIU_SCALAR, u, (PetscScalar *)uu, MPI_REPLACE)); 1882 PetscCall(PetscSFBcastEnd(usf, MPIU_SCALAR, u, (PetscScalar *)uu, MPI_REPLACE)); 1883 } else uu = vv; 1884 } else { 1885 uu = u; 1886 vv = v; 1887 } 1888 hlru_global(*a->hmatrix, uu, ldu, vv, ldv, U->cmap->N, s, handle); 1889 PetscCall(MatDenseRestoreArrayRead(U, &u)); 1890 PetscCall(MatDenseRestoreArrayRead(V, &v)); 1891 } else { 1892 #if defined(PETSC_H2OPUS_USE_GPU) 1893 PetscBool flgU, flgV; 1894 1895 PetscCheck(a->hmatrix_gpu, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing GPU matrix"); 1896 PetscCall(PetscObjectTypeCompareAny((PetscObject)U, &flgU, MATSEQDENSE, MATMPIDENSE, "")); 1897 if (flgU) PetscCall(MatConvert(U, MATDENSECUDA, MAT_INPLACE_MATRIX, &U)); 1898 PetscCall(PetscObjectTypeCompareAny((PetscObject)V, &flgV, MATSEQDENSE, MATMPIDENSE, "")); 1899 if (flgV) PetscCall(MatConvert(V, MATDENSECUDA, MAT_INPLACE_MATRIX, &V)); 1900 PetscCall(MatDenseCUDAGetArrayRead(U, &u)); 1901 PetscCall(MatDenseCUDAGetArrayRead(V, &v)); 1902 if (usesf) { 1903 vv = MatH2OpusGetThrustPointer(*a->yy_gpu); 1904 PetscCall(PetscSFBcastBegin(vsf, MPIU_SCALAR, v, (PetscScalar *)vv, MPI_REPLACE)); 1905 PetscCall(PetscSFBcastEnd(vsf, MPIU_SCALAR, v, (PetscScalar *)vv, MPI_REPLACE)); 1906 if (U != V) { 1907 uu = MatH2OpusGetThrustPointer(*a->xx_gpu); 1908 PetscCall(PetscSFBcastBegin(usf, MPIU_SCALAR, u, (PetscScalar *)uu, MPI_REPLACE)); 1909 PetscCall(PetscSFBcastEnd(usf, MPIU_SCALAR, u, (PetscScalar *)uu, MPI_REPLACE)); 1910 } else uu = vv; 1911 } else { 1912 uu = u; 1913 vv = v; 1914 } 1915 #else 1916 SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "This should not happen"); 1917 #endif 1918 hlru_global(*a->hmatrix_gpu, uu, ldu, vv, ldv, U->cmap->N, s, handle); 1919 #if defined(PETSC_H2OPUS_USE_GPU) 1920 PetscCall(MatDenseCUDARestoreArrayRead(U, &u)); 1921 PetscCall(MatDenseCUDARestoreArrayRead(V, &v)); 1922 if (flgU) PetscCall(MatConvert(U, MATDENSE, MAT_INPLACE_MATRIX, &U)); 1923 if (flgV) PetscCall(MatConvert(V, MATDENSE, MAT_INPLACE_MATRIX, &V)); 1924 #endif 1925 } 1926 PetscCall(PetscLogEventEnd(MAT_H2Opus_LR, A, 0, 0, 0)); 1927 a->orthogonal = PETSC_FALSE; 1928 } 1929 PetscFunctionReturn(PETSC_SUCCESS); 1930 } 1931 #endif 1932