1 #include <h2opusconf.h> 2 /* skip compilation of this .cu file if H2OPUS is CPU only while PETSc has GPU support */ 3 #if !defined(__CUDACC__) || defined(H2OPUS_USE_GPU) 4 #include <h2opus.h> 5 #if defined(H2OPUS_USE_MPI) 6 #include <h2opus/distributed/distributed_h2opus_handle.h> 7 #include <h2opus/distributed/distributed_geometric_construction.h> 8 #include <h2opus/distributed/distributed_hgemv.h> 9 #include <h2opus/distributed/distributed_horthog.h> 10 #include <h2opus/distributed/distributed_hcompress.h> 11 #endif 12 #include <h2opus/util/boxentrygen.h> 13 #include <petsc/private/matimpl.h> 14 #include <petsc/private/vecimpl.h> 15 #include <petsc/private/deviceimpl.h> /*I "petscmat.h" I*/ 16 #include <petscsf.h> 17 18 /* math2opusutils */ 19 PETSC_INTERN PetscErrorCode MatDenseGetH2OpusStridedSF(Mat, PetscSF, PetscSF *); 20 PETSC_INTERN PetscErrorCode VecSign(Vec, Vec); 21 PETSC_INTERN PetscErrorCode VecSetDelta(Vec, PetscInt); 22 PETSC_INTERN PetscErrorCode MatApproximateNorm_Private(Mat, NormType, PetscInt, PetscReal *); 23 24 #define MatH2OpusGetThrustPointer(v) thrust::raw_pointer_cast((v).data()) 25 26 /* Use GPU only if H2OPUS is configured for GPU */ 27 #if defined(PETSC_HAVE_CUDA) && defined(H2OPUS_USE_GPU) 28 #define PETSC_H2OPUS_USE_GPU 29 #endif 30 #if defined(PETSC_H2OPUS_USE_GPU) 31 #define MatH2OpusUpdateIfNeeded(A, B) MatBindToCPU(A, (PetscBool)((A)->boundtocpu || (B))) 32 #else 33 #define MatH2OpusUpdateIfNeeded(A, B) PETSC_SUCCESS 34 #endif 35 36 // TODO H2OPUS: 37 // DistributedHMatrix 38 // unsymmetric ? 39 // transpose for distributed_hgemv? 40 // clearData() 41 // Unify interface for sequential and parallel? 42 // Reuse geometric construction (almost possible, only the unsymmetric case is explicitly handled) 43 // 44 template <class T> 45 class PetscPointCloud : public H2OpusDataSet<T> { 46 private: 47 int dimension; 48 size_t num_points; 49 std::vector<T> pts; 50 51 public: 52 PetscPointCloud(int dim, size_t num_pts, const T coords[]) 53 { 54 dim = dim > 0 ? dim : 1; 55 this->dimension = dim; 56 this->num_points = num_pts; 57 58 pts.resize(num_pts * dim); 59 if (coords) { 60 for (size_t n = 0; n < num_pts; n++) 61 for (int i = 0; i < dim; i++) pts[n * dim + i] = coords[n * dim + i]; 62 } else { 63 PetscReal h = 1.0; //num_pts > 1 ? 1./(num_pts - 1) : 0.0; 64 for (size_t n = 0; n < num_pts; n++) { 65 pts[n * dim] = n * h; 66 for (int i = 1; i < dim; i++) pts[n * dim + i] = 0.0; 67 } 68 } 69 } 70 71 PetscPointCloud(const PetscPointCloud<T> &other) 72 { 73 size_t N = other.dimension * other.num_points; 74 this->dimension = other.dimension; 75 this->num_points = other.num_points; 76 this->pts.resize(N); 77 for (size_t i = 0; i < N; i++) this->pts[i] = other.pts[i]; 78 } 79 80 int getDimension() const { return dimension; } 81 82 size_t getDataSetSize() const { return num_points; } 83 84 T getDataPoint(size_t idx, int dim) const 85 { 86 assert(dim < dimension && idx < num_points); 87 return pts[idx * dimension + dim]; 88 } 89 90 void Print(std::ostream &out = std::cout) 91 { 92 out << "Dimension: " << dimension << std::endl; 93 out << "NumPoints: " << num_points << std::endl; 94 for (size_t n = 0; n < num_points; n++) { 95 for (int d = 0; d < dimension; d++) out << pts[n * dimension + d] << " "; 96 out << std::endl; 97 } 98 } 99 }; 100 101 template <class T> 102 class PetscFunctionGenerator { 103 private: 104 MatH2OpusKernelFn *k; 105 int dim; 106 void *ctx; 107 108 public: 109 PetscFunctionGenerator(MatH2OpusKernelFn *k, int dim, PetscCtx ctx) 110 { 111 this->k = k; 112 this->dim = dim; 113 this->ctx = ctx; 114 } 115 PetscFunctionGenerator(PetscFunctionGenerator &other) 116 { 117 this->k = other.k; 118 this->dim = other.dim; 119 this->ctx = other.ctx; 120 } 121 T operator()(PetscReal *pt1, PetscReal *pt2) { return (T)((*this->k)(this->dim, pt1, pt2, this->ctx)); } 122 }; 123 124 #include <../src/mat/impls/h2opus/math2opussampler.hpp> 125 126 /* just to not clutter the code */ 127 #if !defined(H2OPUS_USE_GPU) 128 typedef HMatrix HMatrix_GPU; 129 #if defined(H2OPUS_USE_MPI) 130 typedef DistributedHMatrix DistributedHMatrix_GPU; 131 #endif 132 #endif 133 134 typedef struct { 135 #if defined(H2OPUS_USE_MPI) 136 distributedH2OpusHandle_t handle; 137 #else 138 h2opusHandle_t handle; 139 #endif 140 /* Sequential and parallel matrices are two different classes at the moment */ 141 HMatrix *hmatrix; 142 #if defined(H2OPUS_USE_MPI) 143 DistributedHMatrix *dist_hmatrix; 144 #else 145 HMatrix *dist_hmatrix; /* just to not clutter the code */ 146 #endif 147 /* May use permutations */ 148 PetscSF sf; 149 PetscLayout h2opus_rmap, h2opus_cmap; 150 IS h2opus_indexmap; 151 thrust::host_vector<PetscScalar> *xx, *yy; 152 PetscInt xxs, yys; 153 PetscBool multsetup; 154 155 /* GPU */ 156 HMatrix_GPU *hmatrix_gpu; 157 #if defined(H2OPUS_USE_MPI) 158 DistributedHMatrix_GPU *dist_hmatrix_gpu; 159 #else 160 HMatrix_GPU *dist_hmatrix_gpu; /* just to not clutter the code */ 161 #endif 162 #if defined(PETSC_H2OPUS_USE_GPU) 163 thrust::device_vector<PetscScalar> *xx_gpu, *yy_gpu; 164 PetscInt xxs_gpu, yys_gpu; 165 #endif 166 167 /* construction from matvecs */ 168 PetscMatrixSampler *sampler; 169 PetscBool nativemult; 170 171 /* Admissibility */ 172 PetscReal eta; 173 PetscInt leafsize; 174 175 /* for dof reordering */ 176 PetscPointCloud<PetscReal> *ptcloud; 177 178 /* kernel for generating matrix entries */ 179 PetscFunctionGenerator<PetscScalar> *kernel; 180 181 /* basis orthogonalized? */ 182 PetscBool orthogonal; 183 184 /* customization */ 185 PetscInt basisord; 186 PetscInt max_rank; 187 PetscInt bs; 188 PetscReal rtol; 189 PetscInt norm_max_samples; 190 PetscBool check_construction; 191 PetscBool hara_verbose; 192 PetscBool resize; 193 194 /* keeps track of MatScale values */ 195 PetscScalar s; 196 } Mat_H2OPUS; 197 198 static PetscErrorCode MatDestroy_H2OPUS(Mat A) 199 { 200 Mat_H2OPUS *a = (Mat_H2OPUS *)A->data; 201 202 PetscFunctionBegin; 203 #if defined(H2OPUS_USE_MPI) 204 h2opusDestroyDistributedHandle(a->handle); 205 #else 206 h2opusDestroyHandle(a->handle); 207 #endif 208 delete a->dist_hmatrix; 209 delete a->hmatrix; 210 PetscCall(PetscSFDestroy(&a->sf)); 211 PetscCall(PetscLayoutDestroy(&a->h2opus_rmap)); 212 PetscCall(PetscLayoutDestroy(&a->h2opus_cmap)); 213 PetscCall(ISDestroy(&a->h2opus_indexmap)); 214 delete a->xx; 215 delete a->yy; 216 delete a->hmatrix_gpu; 217 delete a->dist_hmatrix_gpu; 218 #if defined(PETSC_H2OPUS_USE_GPU) 219 delete a->xx_gpu; 220 delete a->yy_gpu; 221 #endif 222 delete a->sampler; 223 delete a->ptcloud; 224 delete a->kernel; 225 PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatProductSetFromOptions_h2opus_seqdense_C", NULL)); 226 PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatProductSetFromOptions_h2opus_seqdensecuda_C", NULL)); 227 PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatProductSetFromOptions_h2opus_mpidense_C", NULL)); 228 PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatProductSetFromOptions_h2opus_mpidensecuda_C", NULL)); 229 PetscCall(PetscObjectChangeTypeName((PetscObject)A, NULL)); 230 PetscCall(PetscFree(A->data)); 231 PetscFunctionReturn(PETSC_SUCCESS); 232 } 233 234 PetscErrorCode MatH2OpusSetNativeMult(Mat A, PetscBool nm) 235 { 236 Mat_H2OPUS *a = (Mat_H2OPUS *)A->data; 237 PetscBool ish2opus; 238 239 PetscFunctionBegin; 240 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 241 PetscValidLogicalCollectiveBool(A, nm, 2); 242 PetscCall(PetscObjectTypeCompare((PetscObject)A, MATH2OPUS, &ish2opus)); 243 if (ish2opus) { 244 if (a->h2opus_rmap) { /* need to swap layouts for vector creation */ 245 if ((!a->nativemult && nm) || (a->nativemult && !nm)) { 246 PetscLayout t; 247 t = A->rmap; 248 A->rmap = a->h2opus_rmap; 249 a->h2opus_rmap = t; 250 t = A->cmap; 251 A->cmap = a->h2opus_cmap; 252 a->h2opus_cmap = t; 253 } 254 } 255 a->nativemult = nm; 256 } 257 PetscFunctionReturn(PETSC_SUCCESS); 258 } 259 260 PetscErrorCode MatH2OpusGetNativeMult(Mat A, PetscBool *nm) 261 { 262 Mat_H2OPUS *a = (Mat_H2OPUS *)A->data; 263 PetscBool ish2opus; 264 265 PetscFunctionBegin; 266 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 267 PetscAssertPointer(nm, 2); 268 PetscCall(PetscObjectTypeCompare((PetscObject)A, MATH2OPUS, &ish2opus)); 269 PetscCheck(ish2opus, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name); 270 *nm = a->nativemult; 271 PetscFunctionReturn(PETSC_SUCCESS); 272 } 273 274 PETSC_EXTERN PetscErrorCode MatNorm_H2OPUS(Mat A, NormType normtype, PetscReal *n) 275 { 276 PetscBool ish2opus; 277 PetscInt nmax = PETSC_DECIDE; 278 Mat_H2OPUS *a = NULL; 279 PetscBool mult = PETSC_FALSE; 280 281 PetscFunctionBegin; 282 PetscCall(PetscObjectTypeCompare((PetscObject)A, MATH2OPUS, &ish2opus)); 283 if (ish2opus) { /* set userdefine number of samples and fastpath for mult (norms are order independent) */ 284 a = (Mat_H2OPUS *)A->data; 285 286 nmax = a->norm_max_samples; 287 mult = a->nativemult; 288 PetscCall(MatH2OpusSetNativeMult(A, PETSC_TRUE)); 289 } else { 290 PetscCall(PetscOptionsGetInt(((PetscObject)A)->options, ((PetscObject)A)->prefix, "-mat_approximate_norm_samples", &nmax, NULL)); 291 } 292 PetscCall(MatApproximateNorm_Private(A, normtype, nmax, n)); 293 if (a) PetscCall(MatH2OpusSetNativeMult(A, mult)); 294 PetscFunctionReturn(PETSC_SUCCESS); 295 } 296 297 static PetscErrorCode MatH2OpusResizeBuffers_Private(Mat A, PetscInt xN, PetscInt yN) 298 { 299 Mat_H2OPUS *h2opus = (Mat_H2OPUS *)A->data; 300 PetscInt n; 301 PetscBool boundtocpu = PETSC_TRUE; 302 303 PetscFunctionBegin; 304 #if defined(PETSC_H2OPUS_USE_GPU) 305 boundtocpu = A->boundtocpu; 306 #endif 307 PetscCall(PetscSFGetGraph(h2opus->sf, NULL, &n, NULL, NULL)); 308 if (boundtocpu) { 309 if (h2opus->xxs < xN) { 310 h2opus->xx->resize(n * xN); 311 h2opus->xxs = xN; 312 } 313 if (h2opus->yys < yN) { 314 h2opus->yy->resize(n * yN); 315 h2opus->yys = yN; 316 } 317 } 318 #if defined(PETSC_H2OPUS_USE_GPU) 319 if (!boundtocpu) { 320 if (h2opus->xxs_gpu < xN) { 321 h2opus->xx_gpu->resize(n * xN); 322 h2opus->xxs_gpu = xN; 323 } 324 if (h2opus->yys_gpu < yN) { 325 h2opus->yy_gpu->resize(n * yN); 326 h2opus->yys_gpu = yN; 327 } 328 } 329 #endif 330 PetscFunctionReturn(PETSC_SUCCESS); 331 } 332 333 static PetscErrorCode MatMultNKernel_H2OPUS(Mat A, PetscBool transA, Mat B, Mat C) 334 { 335 Mat_H2OPUS *h2opus = (Mat_H2OPUS *)A->data; 336 #if defined(H2OPUS_USE_MPI) 337 h2opusHandle_t handle = h2opus->handle->handle; 338 #else 339 h2opusHandle_t handle = h2opus->handle; 340 #endif 341 PetscBool boundtocpu = PETSC_TRUE; 342 PetscScalar *xx, *yy, *uxx, *uyy; 343 PetscInt blda, clda; 344 PetscMPIInt size; 345 PetscSF bsf, csf; 346 PetscBool usesf = (PetscBool)(h2opus->sf && !h2opus->nativemult); 347 348 PetscFunctionBegin; 349 HLibProfile::clear(); 350 #if defined(PETSC_H2OPUS_USE_GPU) 351 boundtocpu = A->boundtocpu; 352 #endif 353 PetscCall(MatDenseGetLDA(B, &blda)); 354 PetscCall(MatDenseGetLDA(C, &clda)); 355 if (usesf) { 356 PetscInt n; 357 358 PetscCall(MatDenseGetH2OpusStridedSF(B, h2opus->sf, &bsf)); 359 PetscCall(MatDenseGetH2OpusStridedSF(C, h2opus->sf, &csf)); 360 361 PetscCall(MatH2OpusResizeBuffers_Private(A, B->cmap->N, C->cmap->N)); 362 PetscCall(PetscSFGetGraph(h2opus->sf, NULL, &n, NULL, NULL)); 363 blda = n; 364 clda = n; 365 } 366 PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 367 if (boundtocpu) { 368 PetscCall(MatDenseGetArrayRead(B, (const PetscScalar **)&xx)); 369 PetscCall(MatDenseGetArrayWrite(C, &yy)); 370 if (usesf) { 371 uxx = MatH2OpusGetThrustPointer(*h2opus->xx); 372 uyy = MatH2OpusGetThrustPointer(*h2opus->yy); 373 PetscCall(PetscSFBcastBegin(bsf, MPIU_SCALAR, xx, uxx, MPI_REPLACE)); 374 PetscCall(PetscSFBcastEnd(bsf, MPIU_SCALAR, xx, uxx, MPI_REPLACE)); 375 } else { 376 uxx = xx; 377 uyy = yy; 378 } 379 if (size > 1) { 380 PetscCheck(h2opus->dist_hmatrix, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing distributed CPU matrix"); 381 PetscCheck(!transA || A->symmetric, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "MatMultTranspose not yet coded in parallel"); 382 #if defined(H2OPUS_USE_MPI) 383 distributed_hgemv(/* transA ? H2Opus_Trans : H2Opus_NoTrans, */ h2opus->s, *h2opus->dist_hmatrix, uxx, blda, 0.0, uyy, clda, B->cmap->N, h2opus->handle); 384 #endif 385 } else { 386 PetscCheck(h2opus->hmatrix, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing CPU matrix"); 387 hgemv(transA ? H2Opus_Trans : H2Opus_NoTrans, h2opus->s, *h2opus->hmatrix, uxx, blda, 0.0, uyy, clda, B->cmap->N, handle); 388 } 389 PetscCall(MatDenseRestoreArrayRead(B, (const PetscScalar **)&xx)); 390 if (usesf) { 391 PetscCall(PetscSFReduceBegin(csf, MPIU_SCALAR, uyy, yy, MPI_REPLACE)); 392 PetscCall(PetscSFReduceEnd(csf, MPIU_SCALAR, uyy, yy, MPI_REPLACE)); 393 } 394 PetscCall(MatDenseRestoreArrayWrite(C, &yy)); 395 #if defined(PETSC_H2OPUS_USE_GPU) 396 } else { 397 PetscBool ciscuda, biscuda; 398 399 /* If not of type seqdensecuda, convert on the fly (i.e. allocate GPU memory) */ 400 PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &biscuda, MATSEQDENSECUDA, MATMPIDENSECUDA, "")); 401 if (!biscuda) PetscCall(MatConvert(B, MATDENSECUDA, MAT_INPLACE_MATRIX, &B)); 402 PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &ciscuda, MATSEQDENSECUDA, MATMPIDENSECUDA, "")); 403 if (!ciscuda) { 404 C->assembled = PETSC_TRUE; 405 PetscCall(MatConvert(C, MATDENSECUDA, MAT_INPLACE_MATRIX, &C)); 406 } 407 PetscCall(MatDenseCUDAGetArrayRead(B, (const PetscScalar **)&xx)); 408 PetscCall(MatDenseCUDAGetArrayWrite(C, &yy)); 409 if (usesf) { 410 uxx = MatH2OpusGetThrustPointer(*h2opus->xx_gpu); 411 uyy = MatH2OpusGetThrustPointer(*h2opus->yy_gpu); 412 PetscCall(PetscSFBcastBegin(bsf, MPIU_SCALAR, xx, uxx, MPI_REPLACE)); 413 PetscCall(PetscSFBcastEnd(bsf, MPIU_SCALAR, xx, uxx, MPI_REPLACE)); 414 } else { 415 uxx = xx; 416 uyy = yy; 417 } 418 PetscCall(PetscLogGpuTimeBegin()); 419 if (size > 1) { 420 PetscCheck(h2opus->dist_hmatrix_gpu, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing distributed GPU matrix"); 421 PetscCheck(!transA || A->symmetric, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "MatMultTranspose not yet coded in parallel"); 422 #if defined(H2OPUS_USE_MPI) 423 distributed_hgemv(/* transA ? H2Opus_Trans : H2Opus_NoTrans, */ h2opus->s, *h2opus->dist_hmatrix_gpu, uxx, blda, 0.0, uyy, clda, B->cmap->N, h2opus->handle); 424 #endif 425 } else { 426 PetscCheck(h2opus->hmatrix_gpu, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing GPU matrix"); 427 hgemv(transA ? H2Opus_Trans : H2Opus_NoTrans, h2opus->s, *h2opus->hmatrix_gpu, uxx, blda, 0.0, uyy, clda, B->cmap->N, handle); 428 } 429 PetscCall(PetscLogGpuTimeEnd()); 430 PetscCall(MatDenseCUDARestoreArrayRead(B, (const PetscScalar **)&xx)); 431 if (usesf) { 432 PetscCall(PetscSFReduceBegin(csf, MPIU_SCALAR, uyy, yy, MPI_REPLACE)); 433 PetscCall(PetscSFReduceEnd(csf, MPIU_SCALAR, uyy, yy, MPI_REPLACE)); 434 } 435 PetscCall(MatDenseCUDARestoreArrayWrite(C, &yy)); 436 if (!biscuda) PetscCall(MatConvert(B, MATDENSE, MAT_INPLACE_MATRIX, &B)); 437 if (!ciscuda) PetscCall(MatConvert(C, MATDENSE, MAT_INPLACE_MATRIX, &C)); 438 #endif 439 } 440 { /* log flops */ 441 double gops, time, perf, dev; 442 HLibProfile::getHgemvPerf(gops, time, perf, dev); 443 #if defined(PETSC_H2OPUS_USE_GPU) 444 if (boundtocpu) { 445 PetscCall(PetscLogFlops(1e9 * gops)); 446 } else { 447 PetscCall(PetscLogGpuFlops(1e9 * gops)); 448 } 449 #else 450 PetscCall(PetscLogFlops(1e9 * gops)); 451 #endif 452 } 453 PetscFunctionReturn(PETSC_SUCCESS); 454 } 455 456 static PetscErrorCode MatProductNumeric_H2OPUS(Mat C) 457 { 458 Mat_Product *product = C->product; 459 460 PetscFunctionBegin; 461 MatCheckProduct(C, 1); 462 switch (product->type) { 463 case MATPRODUCT_AB: 464 PetscCall(MatMultNKernel_H2OPUS(product->A, PETSC_FALSE, product->B, C)); 465 break; 466 case MATPRODUCT_AtB: 467 PetscCall(MatMultNKernel_H2OPUS(product->A, PETSC_TRUE, product->B, C)); 468 break; 469 default: 470 SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatProduct type %s is not supported", MatProductTypes[product->type]); 471 } 472 PetscFunctionReturn(PETSC_SUCCESS); 473 } 474 475 static PetscErrorCode MatProductSymbolic_H2OPUS(Mat C) 476 { 477 Mat_Product *product = C->product; 478 PetscBool cisdense; 479 Mat A, B; 480 481 PetscFunctionBegin; 482 MatCheckProduct(C, 1); 483 A = product->A; 484 B = product->B; 485 switch (product->type) { 486 case MATPRODUCT_AB: 487 PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N)); 488 PetscCall(MatSetBlockSizesFromMats(C, product->A, product->B)); 489 PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATSEQDENSE, MATMPIDENSE, MATSEQDENSECUDA, MATMPIDENSECUDA, "")); 490 if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)product->B)->type_name)); 491 PetscCall(MatSetUp(C)); 492 break; 493 case MATPRODUCT_AtB: 494 PetscCall(MatSetSizes(C, A->cmap->n, B->cmap->n, A->cmap->N, B->cmap->N)); 495 PetscCall(MatSetBlockSizesFromMats(C, product->A, product->B)); 496 PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATSEQDENSE, MATMPIDENSE, MATSEQDENSECUDA, MATMPIDENSECUDA, "")); 497 if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)product->B)->type_name)); 498 PetscCall(MatSetUp(C)); 499 break; 500 default: 501 SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatProduct type %s is not supported", MatProductTypes[product->type]); 502 } 503 C->ops->productsymbolic = NULL; 504 C->ops->productnumeric = MatProductNumeric_H2OPUS; 505 PetscFunctionReturn(PETSC_SUCCESS); 506 } 507 508 static PetscErrorCode MatProductSetFromOptions_H2OPUS(Mat C) 509 { 510 PetscFunctionBegin; 511 MatCheckProduct(C, 1); 512 if (C->product->type == MATPRODUCT_AB || C->product->type == MATPRODUCT_AtB) C->ops->productsymbolic = MatProductSymbolic_H2OPUS; 513 PetscFunctionReturn(PETSC_SUCCESS); 514 } 515 516 static PetscErrorCode MatMultKernel_H2OPUS(Mat A, Vec x, PetscScalar sy, Vec y, PetscBool trans) 517 { 518 Mat_H2OPUS *h2opus = (Mat_H2OPUS *)A->data; 519 #if defined(H2OPUS_USE_MPI) 520 h2opusHandle_t handle = h2opus->handle->handle; 521 #else 522 h2opusHandle_t handle = h2opus->handle; 523 #endif 524 PetscBool boundtocpu = PETSC_TRUE; 525 PetscInt n; 526 PetscScalar *xx, *yy, *uxx, *uyy; 527 PetscMPIInt size; 528 PetscBool usesf = (PetscBool)(h2opus->sf && !h2opus->nativemult); 529 530 PetscFunctionBegin; 531 HLibProfile::clear(); 532 PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 533 #if defined(PETSC_H2OPUS_USE_GPU) 534 boundtocpu = A->boundtocpu; 535 #endif 536 if (usesf) PetscCall(PetscSFGetGraph(h2opus->sf, NULL, &n, NULL, NULL)); 537 else n = A->rmap->n; 538 if (boundtocpu) { 539 PetscCall(VecGetArrayRead(x, (const PetscScalar **)&xx)); 540 if (sy == 0.0) { 541 PetscCall(VecGetArrayWrite(y, &yy)); 542 } else { 543 PetscCall(VecGetArray(y, &yy)); 544 } 545 if (usesf) { 546 uxx = MatH2OpusGetThrustPointer(*h2opus->xx); 547 uyy = MatH2OpusGetThrustPointer(*h2opus->yy); 548 549 PetscCall(PetscSFBcastBegin(h2opus->sf, MPIU_SCALAR, xx, uxx, MPI_REPLACE)); 550 PetscCall(PetscSFBcastEnd(h2opus->sf, MPIU_SCALAR, xx, uxx, MPI_REPLACE)); 551 if (sy != 0.0) { 552 PetscCall(PetscSFBcastBegin(h2opus->sf, MPIU_SCALAR, yy, uyy, MPI_REPLACE)); 553 PetscCall(PetscSFBcastEnd(h2opus->sf, MPIU_SCALAR, yy, uyy, MPI_REPLACE)); 554 } 555 } else { 556 uxx = xx; 557 uyy = yy; 558 } 559 if (size > 1) { 560 PetscCheck(h2opus->dist_hmatrix, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing distributed CPU matrix"); 561 PetscCheck(!trans || A->symmetric, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "MatMultTranspose not yet coded in parallel"); 562 #if defined(H2OPUS_USE_MPI) 563 distributed_hgemv(/*trans ? H2Opus_Trans : H2Opus_NoTrans, */ h2opus->s, *h2opus->dist_hmatrix, uxx, n, sy, uyy, n, 1, h2opus->handle); 564 #endif 565 } else { 566 PetscCheck(h2opus->hmatrix, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing CPU matrix"); 567 hgemv(trans ? H2Opus_Trans : H2Opus_NoTrans, h2opus->s, *h2opus->hmatrix, uxx, n, sy, uyy, n, 1, handle); 568 } 569 PetscCall(VecRestoreArrayRead(x, (const PetscScalar **)&xx)); 570 if (usesf) { 571 PetscCall(PetscSFReduceBegin(h2opus->sf, MPIU_SCALAR, uyy, yy, MPI_REPLACE)); 572 PetscCall(PetscSFReduceEnd(h2opus->sf, MPIU_SCALAR, uyy, yy, MPI_REPLACE)); 573 } 574 if (sy == 0.0) { 575 PetscCall(VecRestoreArrayWrite(y, &yy)); 576 } else { 577 PetscCall(VecRestoreArray(y, &yy)); 578 } 579 #if defined(PETSC_H2OPUS_USE_GPU) 580 } else { 581 PetscCall(VecCUDAGetArrayRead(x, (const PetscScalar **)&xx)); 582 if (sy == 0.0) { 583 PetscCall(VecCUDAGetArrayWrite(y, &yy)); 584 } else { 585 PetscCall(VecCUDAGetArray(y, &yy)); 586 } 587 if (usesf) { 588 uxx = MatH2OpusGetThrustPointer(*h2opus->xx_gpu); 589 uyy = MatH2OpusGetThrustPointer(*h2opus->yy_gpu); 590 591 PetscCall(PetscSFBcastBegin(h2opus->sf, MPIU_SCALAR, xx, uxx, MPI_REPLACE)); 592 PetscCall(PetscSFBcastEnd(h2opus->sf, MPIU_SCALAR, xx, uxx, MPI_REPLACE)); 593 if (sy != 0.0) { 594 PetscCall(PetscSFBcastBegin(h2opus->sf, MPIU_SCALAR, yy, uyy, MPI_REPLACE)); 595 PetscCall(PetscSFBcastEnd(h2opus->sf, MPIU_SCALAR, yy, uyy, MPI_REPLACE)); 596 } 597 } else { 598 uxx = xx; 599 uyy = yy; 600 } 601 PetscCall(PetscLogGpuTimeBegin()); 602 if (size > 1) { 603 PetscCheck(h2opus->dist_hmatrix_gpu, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing distributed GPU matrix"); 604 PetscCheck(!trans || A->symmetric, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "MatMultTranspose not yet coded in parallel"); 605 #if defined(H2OPUS_USE_MPI) 606 distributed_hgemv(/*trans ? H2Opus_Trans : H2Opus_NoTrans, */ h2opus->s, *h2opus->dist_hmatrix_gpu, uxx, n, sy, uyy, n, 1, h2opus->handle); 607 #endif 608 } else { 609 PetscCheck(h2opus->hmatrix_gpu, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing GPU matrix"); 610 hgemv(trans ? H2Opus_Trans : H2Opus_NoTrans, h2opus->s, *h2opus->hmatrix_gpu, uxx, n, sy, uyy, n, 1, handle); 611 } 612 PetscCall(PetscLogGpuTimeEnd()); 613 PetscCall(VecCUDARestoreArrayRead(x, (const PetscScalar **)&xx)); 614 if (usesf) { 615 PetscCall(PetscSFReduceBegin(h2opus->sf, MPIU_SCALAR, uyy, yy, MPI_REPLACE)); 616 PetscCall(PetscSFReduceEnd(h2opus->sf, MPIU_SCALAR, uyy, yy, MPI_REPLACE)); 617 } 618 if (sy == 0.0) { 619 PetscCall(VecCUDARestoreArrayWrite(y, &yy)); 620 } else { 621 PetscCall(VecCUDARestoreArray(y, &yy)); 622 } 623 #endif 624 } 625 { /* log flops */ 626 double gops, time, perf, dev; 627 HLibProfile::getHgemvPerf(gops, time, perf, dev); 628 #if defined(PETSC_H2OPUS_USE_GPU) 629 if (boundtocpu) { 630 PetscCall(PetscLogFlops(1e9 * gops)); 631 } else { 632 PetscCall(PetscLogGpuFlops(1e9 * gops)); 633 } 634 #else 635 PetscCall(PetscLogFlops(1e9 * gops)); 636 #endif 637 } 638 PetscFunctionReturn(PETSC_SUCCESS); 639 } 640 641 static PetscErrorCode MatMultTranspose_H2OPUS(Mat A, Vec x, Vec y) 642 { 643 PetscBool xiscuda, yiscuda; 644 645 PetscFunctionBegin; 646 PetscCall(PetscObjectTypeCompareAny((PetscObject)x, &xiscuda, VECSEQCUDA, VECMPICUDA, "")); 647 PetscCall(PetscObjectTypeCompareAny((PetscObject)y, &yiscuda, VECSEQCUDA, VECMPICUDA, "")); 648 PetscCall(MatH2OpusUpdateIfNeeded(A, !xiscuda || !yiscuda)); 649 PetscCall(MatMultKernel_H2OPUS(A, x, 0.0, y, PETSC_TRUE)); 650 PetscFunctionReturn(PETSC_SUCCESS); 651 } 652 653 static PetscErrorCode MatMult_H2OPUS(Mat A, Vec x, Vec y) 654 { 655 PetscBool xiscuda, yiscuda; 656 657 PetscFunctionBegin; 658 PetscCall(PetscObjectTypeCompareAny((PetscObject)x, &xiscuda, VECSEQCUDA, VECMPICUDA, "")); 659 PetscCall(PetscObjectTypeCompareAny((PetscObject)y, &yiscuda, VECSEQCUDA, VECMPICUDA, "")); 660 PetscCall(MatH2OpusUpdateIfNeeded(A, !xiscuda || !yiscuda)); 661 PetscCall(MatMultKernel_H2OPUS(A, x, 0.0, y, PETSC_FALSE)); 662 PetscFunctionReturn(PETSC_SUCCESS); 663 } 664 665 static PetscErrorCode MatMultTransposeAdd_H2OPUS(Mat A, Vec x, Vec y, Vec z) 666 { 667 PetscBool xiscuda, ziscuda; 668 669 PetscFunctionBegin; 670 PetscCall(VecCopy(y, z)); 671 PetscCall(PetscObjectTypeCompareAny((PetscObject)x, &xiscuda, VECSEQCUDA, VECMPICUDA, "")); 672 PetscCall(PetscObjectTypeCompareAny((PetscObject)z, &ziscuda, VECSEQCUDA, VECMPICUDA, "")); 673 PetscCall(MatH2OpusUpdateIfNeeded(A, !xiscuda || !ziscuda)); 674 PetscCall(MatMultKernel_H2OPUS(A, x, 1.0, z, PETSC_TRUE)); 675 PetscFunctionReturn(PETSC_SUCCESS); 676 } 677 678 static PetscErrorCode MatMultAdd_H2OPUS(Mat A, Vec x, Vec y, Vec z) 679 { 680 PetscBool xiscuda, ziscuda; 681 682 PetscFunctionBegin; 683 PetscCall(VecCopy(y, z)); 684 PetscCall(PetscObjectTypeCompareAny((PetscObject)x, &xiscuda, VECSEQCUDA, VECMPICUDA, "")); 685 PetscCall(PetscObjectTypeCompareAny((PetscObject)z, &ziscuda, VECSEQCUDA, VECMPICUDA, "")); 686 PetscCall(MatH2OpusUpdateIfNeeded(A, !xiscuda || !ziscuda)); 687 PetscCall(MatMultKernel_H2OPUS(A, x, 1.0, z, PETSC_FALSE)); 688 PetscFunctionReturn(PETSC_SUCCESS); 689 } 690 691 static PetscErrorCode MatScale_H2OPUS(Mat A, PetscScalar s) 692 { 693 Mat_H2OPUS *a = (Mat_H2OPUS *)A->data; 694 695 PetscFunctionBegin; 696 a->s *= s; 697 PetscFunctionReturn(PETSC_SUCCESS); 698 } 699 700 static PetscErrorCode MatSetFromOptions_H2OPUS(Mat A, PetscOptionItems PetscOptionsObject) 701 { 702 Mat_H2OPUS *a = (Mat_H2OPUS *)A->data; 703 704 PetscFunctionBegin; 705 PetscOptionsHeadBegin(PetscOptionsObject, "H2OPUS options"); 706 PetscCall(PetscOptionsInt("-mat_h2opus_leafsize", "Leaf size of cluster tree", NULL, a->leafsize, &a->leafsize, NULL)); 707 PetscCall(PetscOptionsReal("-mat_h2opus_eta", "Admissibility condition tolerance", NULL, a->eta, &a->eta, NULL)); 708 PetscCall(PetscOptionsInt("-mat_h2opus_order", "Basis order for off-diagonal sampling when constructed from kernel", NULL, a->basisord, &a->basisord, NULL)); 709 PetscCall(PetscOptionsInt("-mat_h2opus_maxrank", "Maximum rank when constructed from matvecs", NULL, a->max_rank, &a->max_rank, NULL)); 710 PetscCall(PetscOptionsInt("-mat_h2opus_samples", "Maximum number of samples to be taken concurrently when constructing from matvecs", NULL, a->bs, &a->bs, NULL)); 711 PetscCall(PetscOptionsInt("-mat_h2opus_normsamples", "Maximum number of samples to be when estimating norms", NULL, a->norm_max_samples, &a->norm_max_samples, NULL)); 712 PetscCall(PetscOptionsReal("-mat_h2opus_rtol", "Relative tolerance for construction from sampling", NULL, a->rtol, &a->rtol, NULL)); 713 PetscCall(PetscOptionsBool("-mat_h2opus_check", "Check error when constructing from sampling during MatAssemblyEnd()", NULL, a->check_construction, &a->check_construction, NULL)); 714 PetscCall(PetscOptionsBool("-mat_h2opus_hara_verbose", "Verbose output from hara construction", NULL, a->hara_verbose, &a->hara_verbose, NULL)); 715 PetscCall(PetscOptionsBool("-mat_h2opus_resize", "Resize after compression", NULL, a->resize, &a->resize, NULL)); 716 PetscOptionsHeadEnd(); 717 PetscFunctionReturn(PETSC_SUCCESS); 718 } 719 720 static PetscErrorCode MatH2OpusSetCoords_H2OPUS(Mat, PetscInt, const PetscReal[], PetscBool, MatH2OpusKernelFn *, void *); 721 722 static PetscErrorCode MatH2OpusInferCoordinates_Private(Mat A) 723 { 724 Mat_H2OPUS *a = (Mat_H2OPUS *)A->data; 725 Vec c; 726 PetscInt spacedim; 727 const PetscScalar *coords; 728 729 PetscFunctionBegin; 730 if (a->ptcloud) PetscFunctionReturn(PETSC_SUCCESS); 731 PetscCall(PetscObjectQuery((PetscObject)A, "__math2opus_coords", (PetscObject *)&c)); 732 if (!c && a->sampler) { 733 Mat S = a->sampler->GetSamplingMat(); 734 735 PetscCall(PetscObjectQuery((PetscObject)S, "__math2opus_coords", (PetscObject *)&c)); 736 } 737 if (!c) { 738 PetscCall(MatH2OpusSetCoords_H2OPUS(A, -1, NULL, PETSC_FALSE, NULL, NULL)); 739 } else { 740 PetscCall(VecGetArrayRead(c, &coords)); 741 PetscCall(VecGetBlockSize(c, &spacedim)); 742 PetscCall(MatH2OpusSetCoords_H2OPUS(A, spacedim, coords, PETSC_FALSE, NULL, NULL)); 743 PetscCall(VecRestoreArrayRead(c, &coords)); 744 } 745 PetscFunctionReturn(PETSC_SUCCESS); 746 } 747 748 static PetscErrorCode MatSetUpMultiply_H2OPUS(Mat A) 749 { 750 MPI_Comm comm; 751 PetscMPIInt size; 752 Mat_H2OPUS *a = (Mat_H2OPUS *)A->data; 753 PetscInt n = 0, *idx = NULL; 754 int *iidx = NULL; 755 PetscCopyMode own; 756 PetscBool rid; 757 758 PetscFunctionBegin; 759 if (a->multsetup) PetscFunctionReturn(PETSC_SUCCESS); 760 if (a->sf) { /* MatDuplicate_H2OPUS takes reference to the SF */ 761 PetscCall(PetscSFGetGraph(a->sf, NULL, &n, NULL, NULL)); 762 #if defined(PETSC_H2OPUS_USE_GPU) 763 a->xx_gpu = new thrust::device_vector<PetscScalar>(n); 764 a->yy_gpu = new thrust::device_vector<PetscScalar>(n); 765 a->xxs_gpu = 1; 766 a->yys_gpu = 1; 767 #endif 768 a->xx = new thrust::host_vector<PetscScalar>(n); 769 a->yy = new thrust::host_vector<PetscScalar>(n); 770 a->xxs = 1; 771 a->yys = 1; 772 } else { 773 IS is; 774 PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 775 PetscCallMPI(MPI_Comm_size(comm, &size)); 776 if (!a->h2opus_indexmap) { 777 if (size > 1) { 778 PetscCheck(a->dist_hmatrix, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing distributed CPU matrix"); 779 #if defined(H2OPUS_USE_MPI) 780 iidx = MatH2OpusGetThrustPointer(a->dist_hmatrix->basis_tree.basis_branch.index_map); 781 n = a->dist_hmatrix->basis_tree.basis_branch.index_map.size(); 782 #endif 783 } else { 784 iidx = MatH2OpusGetThrustPointer(a->hmatrix->u_basis_tree.index_map); 785 n = a->hmatrix->u_basis_tree.index_map.size(); 786 } 787 788 if (PetscDefined(USE_64BIT_INDICES)) { 789 PetscInt i; 790 791 own = PETSC_OWN_POINTER; 792 PetscCall(PetscMalloc1(n, &idx)); 793 for (i = 0; i < n; i++) idx[i] = iidx[i]; 794 } else { 795 own = PETSC_COPY_VALUES; 796 idx = (PetscInt *)iidx; 797 } 798 PetscCall(ISCreateGeneral(comm, n, idx, own, &is)); 799 PetscCall(ISSetPermutation(is)); 800 PetscCall(ISViewFromOptions(is, (PetscObject)A, "-mat_h2opus_indexmap_view")); 801 a->h2opus_indexmap = is; 802 } 803 PetscCall(ISGetLocalSize(a->h2opus_indexmap, &n)); 804 PetscCall(ISGetIndices(a->h2opus_indexmap, (const PetscInt **)&idx)); 805 rid = (PetscBool)(n == A->rmap->n); 806 PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &rid, 1, MPI_C_BOOL, MPI_LAND, comm)); 807 if (rid) PetscCall(ISIdentity(a->h2opus_indexmap, &rid)); 808 if (!rid) { 809 if (size > 1) { /* Parallel distribution may be different, save it here for fast path in MatMult (see MatH2OpusSetNativeMult) */ 810 PetscCall(PetscLayoutCreate(comm, &a->h2opus_rmap)); 811 PetscCall(PetscLayoutSetLocalSize(a->h2opus_rmap, n)); 812 PetscCall(PetscLayoutSetUp(a->h2opus_rmap)); 813 PetscCall(PetscLayoutReference(a->h2opus_rmap, &a->h2opus_cmap)); 814 } 815 PetscCall(PetscSFCreate(comm, &a->sf)); 816 PetscCall(PetscSFSetGraphLayout(a->sf, A->rmap, n, NULL, PETSC_OWN_POINTER, idx)); 817 PetscCall(PetscSFSetUp(a->sf)); 818 PetscCall(PetscSFViewFromOptions(a->sf, (PetscObject)A, "-mat_h2opus_sf_view")); 819 #if defined(PETSC_H2OPUS_USE_GPU) 820 a->xx_gpu = new thrust::device_vector<PetscScalar>(n); 821 a->yy_gpu = new thrust::device_vector<PetscScalar>(n); 822 a->xxs_gpu = 1; 823 a->yys_gpu = 1; 824 #endif 825 a->xx = new thrust::host_vector<PetscScalar>(n); 826 a->yy = new thrust::host_vector<PetscScalar>(n); 827 a->xxs = 1; 828 a->yys = 1; 829 } 830 PetscCall(ISRestoreIndices(a->h2opus_indexmap, (const PetscInt **)&idx)); 831 } 832 a->multsetup = PETSC_TRUE; 833 PetscFunctionReturn(PETSC_SUCCESS); 834 } 835 836 static PetscErrorCode MatAssemblyEnd_H2OPUS(Mat A, MatAssemblyType assemblytype) 837 { 838 Mat_H2OPUS *a = (Mat_H2OPUS *)A->data; 839 #if defined(H2OPUS_USE_MPI) 840 h2opusHandle_t handle = a->handle->handle; 841 #else 842 h2opusHandle_t handle = a->handle; 843 #endif 844 PetscBool kernel = PETSC_FALSE; 845 PetscBool boundtocpu = PETSC_TRUE; 846 PetscBool samplingdone = PETSC_FALSE; 847 MPI_Comm comm; 848 PetscMPIInt size; 849 850 PetscFunctionBegin; 851 PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 852 PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Different row and column local sizes are not supported"); 853 PetscCheck(A->rmap->N == A->cmap->N, comm, PETSC_ERR_SUP, "Rectangular matrices are not supported"); 854 855 /* XXX */ 856 a->leafsize = PetscMin(a->leafsize, PetscMin(A->rmap->N, A->cmap->N)); 857 858 PetscCallMPI(MPI_Comm_size(comm, &size)); 859 /* TODO REUSABILITY of geometric construction */ 860 delete a->hmatrix; 861 delete a->dist_hmatrix; 862 #if defined(PETSC_H2OPUS_USE_GPU) 863 delete a->hmatrix_gpu; 864 delete a->dist_hmatrix_gpu; 865 #endif 866 a->orthogonal = PETSC_FALSE; 867 868 /* TODO: other? */ 869 H2OpusBoxCenterAdmissibility adm(a->eta); 870 871 PetscCall(PetscLogEventBegin(MAT_H2Opus_Build, A, 0, 0, 0)); 872 if (size > 1) { 873 #if defined(H2OPUS_USE_MPI) 874 a->dist_hmatrix = new DistributedHMatrix(A->rmap->n /* ,A->symmetric */); 875 #else 876 a->dist_hmatrix = NULL; 877 #endif 878 } else a->hmatrix = new HMatrix(A->rmap->n, A->symmetric == PETSC_BOOL3_TRUE); 879 PetscCall(MatH2OpusInferCoordinates_Private(A)); 880 PetscCheck(a->ptcloud, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing pointcloud"); 881 if (a->kernel) { 882 BoxEntryGen<PetscScalar, H2OPUS_HWTYPE_CPU, PetscFunctionGenerator<PetscScalar>> entry_gen(*a->kernel); 883 if (size > 1) { 884 PetscCheck(a->dist_hmatrix, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing distributed CPU matrix"); 885 #if defined(H2OPUS_USE_MPI) 886 buildDistributedHMatrix(*a->dist_hmatrix, a->ptcloud, adm, entry_gen, a->leafsize, a->basisord, a->handle); 887 #endif 888 } else { 889 buildHMatrix(*a->hmatrix, a->ptcloud, adm, entry_gen, a->leafsize, a->basisord); 890 } 891 kernel = PETSC_TRUE; 892 } else { 893 PetscCheck(size <= 1, comm, PETSC_ERR_SUP, "Construction from sampling not supported in parallel"); 894 buildHMatrixStructure(*a->hmatrix, a->ptcloud, a->leafsize, adm); 895 } 896 PetscCall(MatSetUpMultiply_H2OPUS(A)); 897 898 #if defined(PETSC_H2OPUS_USE_GPU) 899 boundtocpu = A->boundtocpu; 900 if (!boundtocpu) { 901 if (size > 1) { 902 PetscCheck(a->dist_hmatrix, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing distributed CPU matrix"); 903 #if defined(H2OPUS_USE_MPI) 904 a->dist_hmatrix_gpu = new DistributedHMatrix_GPU(*a->dist_hmatrix); 905 #endif 906 } else { 907 a->hmatrix_gpu = new HMatrix_GPU(*a->hmatrix); 908 } 909 } 910 #endif 911 if (size == 1) { 912 if (!kernel && a->sampler && a->sampler->GetSamplingMat()) { 913 PetscReal Anorm; 914 bool verbose; 915 916 PetscCall(PetscOptionsGetBool(((PetscObject)A)->options, ((PetscObject)A)->prefix, "-mat_h2opus_hara_verbose", &a->hara_verbose, NULL)); 917 verbose = a->hara_verbose; 918 PetscCall(MatApproximateNorm_Private(a->sampler->GetSamplingMat(), NORM_2, a->norm_max_samples, &Anorm)); 919 if (a->hara_verbose) PetscCall(PetscPrintf(PETSC_COMM_SELF, "Sampling uses max rank %d, tol %g (%g*%g), %s samples %d\n", a->max_rank, a->rtol * Anorm, a->rtol, Anorm, boundtocpu ? "CPU" : "GPU", a->bs)); 920 if (a->sf && !a->nativemult) a->sampler->SetIndexMap(a->hmatrix->u_basis_tree.index_map.size(), a->hmatrix->u_basis_tree.index_map.data()); 921 a->sampler->SetStream(handle->getMainStream()); 922 if (boundtocpu) { 923 a->sampler->SetGPUSampling(false); 924 hara(a->sampler, *a->hmatrix, a->max_rank, 10 /* TODO */, a->rtol * Anorm, a->bs, handle, verbose); 925 #if defined(PETSC_H2OPUS_USE_GPU) 926 } else { 927 a->sampler->SetGPUSampling(true); 928 hara(a->sampler, *a->hmatrix_gpu, a->max_rank, 10 /* TODO */, a->rtol * Anorm, a->bs, handle, verbose); 929 #endif 930 } 931 samplingdone = PETSC_TRUE; 932 } 933 } 934 #if defined(PETSC_H2OPUS_USE_GPU) 935 if (!boundtocpu) { 936 delete a->hmatrix; 937 delete a->dist_hmatrix; 938 a->hmatrix = NULL; 939 a->dist_hmatrix = NULL; 940 } 941 A->offloadmask = boundtocpu ? PETSC_OFFLOAD_CPU : PETSC_OFFLOAD_GPU; 942 #endif 943 PetscCall(PetscLogEventEnd(MAT_H2Opus_Build, A, 0, 0, 0)); 944 945 if (!a->s) a->s = 1.0; 946 A->assembled = PETSC_TRUE; 947 948 if (samplingdone) { 949 PetscBool check = a->check_construction; 950 PetscBool checke = PETSC_FALSE; 951 952 PetscCall(PetscOptionsGetBool(((PetscObject)A)->options, ((PetscObject)A)->prefix, "-mat_h2opus_check", &check, NULL)); 953 PetscCall(PetscOptionsGetBool(((PetscObject)A)->options, ((PetscObject)A)->prefix, "-mat_h2opus_check_explicit", &checke, NULL)); 954 if (check) { 955 Mat E, Ae; 956 PetscReal n1, ni, n2; 957 PetscReal n1A, niA, n2A; 958 PetscErrorCodeFn *normfunc; 959 960 Ae = a->sampler->GetSamplingMat(); 961 PetscCall(MatConvert(A, MATSHELL, MAT_INITIAL_MATRIX, &E)); 962 PetscCall(MatShellSetOperation(E, MATOP_NORM, (PetscErrorCodeFn *)MatNorm_H2OPUS)); 963 PetscCall(MatAXPY(E, -1.0, Ae, DIFFERENT_NONZERO_PATTERN)); 964 PetscCall(MatNorm(E, NORM_1, &n1)); 965 PetscCall(MatNorm(E, NORM_INFINITY, &ni)); 966 PetscCall(MatNorm(E, NORM_2, &n2)); 967 if (checke) { 968 Mat eA, eE, eAe; 969 970 PetscCall(MatComputeOperator(A, MATAIJ, &eA)); 971 PetscCall(MatComputeOperator(E, MATAIJ, &eE)); 972 PetscCall(MatComputeOperator(Ae, MATAIJ, &eAe)); 973 PetscCall(MatFilter(eA, PETSC_SMALL, PETSC_FALSE, PETSC_FALSE)); 974 PetscCall(MatFilter(eE, PETSC_SMALL, PETSC_FALSE, PETSC_FALSE)); 975 PetscCall(MatFilter(eAe, PETSC_SMALL, PETSC_FALSE, PETSC_FALSE)); 976 PetscCall(PetscObjectSetName((PetscObject)eA, "H2Mat")); 977 PetscCall(MatView(eA, NULL)); 978 PetscCall(PetscObjectSetName((PetscObject)eAe, "S")); 979 PetscCall(MatView(eAe, NULL)); 980 PetscCall(PetscObjectSetName((PetscObject)eE, "H2Mat - S")); 981 PetscCall(MatView(eE, NULL)); 982 PetscCall(MatDestroy(&eA)); 983 PetscCall(MatDestroy(&eE)); 984 PetscCall(MatDestroy(&eAe)); 985 } 986 987 PetscCall(MatGetOperation(Ae, MATOP_NORM, &normfunc)); 988 PetscCall(MatSetOperation(Ae, MATOP_NORM, (PetscErrorCodeFn *)MatNorm_H2OPUS)); 989 PetscCall(MatNorm(Ae, NORM_1, &n1A)); 990 PetscCall(MatNorm(Ae, NORM_INFINITY, &niA)); 991 PetscCall(MatNorm(Ae, NORM_2, &n2A)); 992 n1A = PetscMax(n1A, PETSC_SMALL); 993 n2A = PetscMax(n2A, PETSC_SMALL); 994 niA = PetscMax(niA, PETSC_SMALL); 995 PetscCall(MatSetOperation(Ae, MATOP_NORM, normfunc)); 996 PetscCall(PetscPrintf(PetscObjectComm((PetscObject)A), "MATH2OPUS construction errors: NORM_1 %g, NORM_INFINITY %g, NORM_2 %g (%g %g %g)\n", (double)n1, (double)ni, (double)n2, (double)(n1 / n1A), (double)(ni / niA), (double)(n2 / n2A))); 997 PetscCall(MatDestroy(&E)); 998 } 999 a->sampler->SetSamplingMat(NULL); 1000 } 1001 PetscFunctionReturn(PETSC_SUCCESS); 1002 } 1003 1004 static PetscErrorCode MatZeroEntries_H2OPUS(Mat A) 1005 { 1006 PetscMPIInt size; 1007 Mat_H2OPUS *a = (Mat_H2OPUS *)A->data; 1008 1009 PetscFunctionBegin; 1010 PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 1011 PetscCheck(size <= 1, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not yet supported"); 1012 a->hmatrix->clearData(); 1013 #if defined(PETSC_H2OPUS_USE_GPU) 1014 if (a->hmatrix_gpu) a->hmatrix_gpu->clearData(); 1015 #endif 1016 PetscFunctionReturn(PETSC_SUCCESS); 1017 } 1018 1019 static PetscErrorCode MatDuplicate_H2OPUS(Mat B, MatDuplicateOption op, Mat *nA) 1020 { 1021 Mat A; 1022 Mat_H2OPUS *a, *b = (Mat_H2OPUS *)B->data; 1023 PetscBool iscpu = PetscDefined(H2OPUS_USE_GPU) ? PETSC_FALSE : PETSC_TRUE; 1024 MPI_Comm comm; 1025 1026 PetscFunctionBegin; 1027 PetscCall(PetscObjectGetComm((PetscObject)B, &comm)); 1028 PetscCall(MatCreate(comm, &A)); 1029 PetscCall(MatSetSizes(A, B->rmap->n, B->cmap->n, B->rmap->N, B->cmap->N)); 1030 PetscCall(MatSetType(A, MATH2OPUS)); 1031 PetscCall(MatPropagateSymmetryOptions(B, A)); 1032 a = (Mat_H2OPUS *)A->data; 1033 1034 a->eta = b->eta; 1035 a->leafsize = b->leafsize; 1036 a->basisord = b->basisord; 1037 a->max_rank = b->max_rank; 1038 a->bs = b->bs; 1039 a->rtol = b->rtol; 1040 a->norm_max_samples = b->norm_max_samples; 1041 if (op == MAT_COPY_VALUES) a->s = b->s; 1042 1043 a->ptcloud = new PetscPointCloud<PetscReal>(*b->ptcloud); 1044 if (op == MAT_COPY_VALUES && b->kernel) a->kernel = new PetscFunctionGenerator<PetscScalar>(*b->kernel); 1045 1046 #if defined(H2OPUS_USE_MPI) 1047 if (b->dist_hmatrix) a->dist_hmatrix = new DistributedHMatrix(*b->dist_hmatrix); 1048 #if defined(PETSC_H2OPUS_USE_GPU) 1049 if (b->dist_hmatrix_gpu) a->dist_hmatrix_gpu = new DistributedHMatrix_GPU(*b->dist_hmatrix_gpu); 1050 #endif 1051 #endif 1052 if (b->hmatrix) { 1053 a->hmatrix = new HMatrix(*b->hmatrix); 1054 if (op == MAT_DO_NOT_COPY_VALUES) a->hmatrix->clearData(); 1055 } 1056 #if defined(PETSC_H2OPUS_USE_GPU) 1057 if (b->hmatrix_gpu) { 1058 a->hmatrix_gpu = new HMatrix_GPU(*b->hmatrix_gpu); 1059 if (op == MAT_DO_NOT_COPY_VALUES) a->hmatrix_gpu->clearData(); 1060 } 1061 #endif 1062 if (b->sf) { 1063 PetscCall(PetscObjectReference((PetscObject)b->sf)); 1064 a->sf = b->sf; 1065 } 1066 if (b->h2opus_indexmap) { 1067 PetscCall(PetscObjectReference((PetscObject)b->h2opus_indexmap)); 1068 a->h2opus_indexmap = b->h2opus_indexmap; 1069 } 1070 1071 PetscCall(MatSetUp(A)); 1072 PetscCall(MatSetUpMultiply_H2OPUS(A)); 1073 if (op == MAT_COPY_VALUES) { 1074 A->assembled = PETSC_TRUE; 1075 a->orthogonal = b->orthogonal; 1076 #if defined(PETSC_H2OPUS_USE_GPU) 1077 A->offloadmask = B->offloadmask; 1078 #endif 1079 } 1080 #if defined(PETSC_H2OPUS_USE_GPU) 1081 iscpu = B->boundtocpu; 1082 #endif 1083 PetscCall(MatBindToCPU(A, iscpu)); 1084 1085 *nA = A; 1086 PetscFunctionReturn(PETSC_SUCCESS); 1087 } 1088 1089 static PetscErrorCode MatView_H2OPUS(Mat A, PetscViewer view) 1090 { 1091 Mat_H2OPUS *h2opus = (Mat_H2OPUS *)A->data; 1092 PetscBool isascii, vieweps; 1093 PetscMPIInt size; 1094 PetscViewerFormat format; 1095 1096 PetscFunctionBegin; 1097 PetscCall(PetscObjectTypeCompare((PetscObject)view, PETSCVIEWERASCII, &isascii)); 1098 PetscCall(PetscViewerGetFormat(view, &format)); 1099 PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 1100 if (isascii) { 1101 if (format == PETSC_VIEWER_ASCII_MATLAB) { 1102 if (size == 1) { 1103 FILE *fp; 1104 PetscCall(PetscViewerASCIIGetPointer(view, &fp)); 1105 dumpHMatrix(*h2opus->hmatrix, 6, fp); 1106 } 1107 } else { 1108 PetscCall(PetscViewerASCIIPrintf(view, " H-Matrix constructed from %s\n", h2opus->kernel ? "Kernel" : "Mat")); 1109 PetscCall(PetscViewerASCIIPrintf(view, " PointCloud dim %" PetscInt_FMT "\n", h2opus->ptcloud ? h2opus->ptcloud->getDimension() : 0)); 1110 PetscCall(PetscViewerASCIIPrintf(view, " Admissibility parameters: leaf size %" PetscInt_FMT ", eta %g\n", h2opus->leafsize, (double)h2opus->eta)); 1111 if (!h2opus->kernel) { 1112 PetscCall(PetscViewerASCIIPrintf(view, " Sampling parameters: max_rank %" PetscInt_FMT ", samples %" PetscInt_FMT ", tolerance %g\n", h2opus->max_rank, h2opus->bs, (double)h2opus->rtol)); 1113 } else { 1114 PetscCall(PetscViewerASCIIPrintf(view, " Off-diagonal blocks approximation order %" PetscInt_FMT "\n", h2opus->basisord)); 1115 } 1116 PetscCall(PetscViewerASCIIPrintf(view, " Number of samples for norms %" PetscInt_FMT "\n", h2opus->norm_max_samples)); 1117 if (size == 1) { 1118 double dense_mem_cpu = h2opus->hmatrix ? h2opus->hmatrix->getDenseMemoryUsage() : 0; 1119 double low_rank_cpu = h2opus->hmatrix ? h2opus->hmatrix->getLowRankMemoryUsage() : 0; 1120 #if defined(PETSC_HAVE_CUDA) 1121 double dense_mem_gpu = h2opus->hmatrix_gpu ? h2opus->hmatrix_gpu->getDenseMemoryUsage() : 0; 1122 double low_rank_gpu = h2opus->hmatrix_gpu ? h2opus->hmatrix_gpu->getLowRankMemoryUsage() : 0; 1123 #endif 1124 PetscCall(PetscViewerASCIIPrintf(view, " Memory consumption GB (CPU): %g (dense) %g (low rank) %g (total)\n", dense_mem_cpu, low_rank_cpu, low_rank_cpu + dense_mem_cpu)); 1125 #if defined(PETSC_HAVE_CUDA) 1126 PetscCall(PetscViewerASCIIPrintf(view, " Memory consumption GB (GPU): %g (dense) %g (low rank) %g (total)\n", dense_mem_gpu, low_rank_gpu, low_rank_gpu + dense_mem_gpu)); 1127 #endif 1128 } else { 1129 #if defined(PETSC_HAVE_CUDA) 1130 double matrix_mem[4] = {0., 0., 0., 0.}; 1131 PetscMPIInt rsize = 4; 1132 #else 1133 double matrix_mem[2] = {0., 0.}; 1134 PetscMPIInt rsize = 2; 1135 #endif 1136 #if defined(H2OPUS_USE_MPI) 1137 matrix_mem[0] = h2opus->dist_hmatrix ? h2opus->dist_hmatrix->getLocalDenseMemoryUsage() : 0; 1138 matrix_mem[1] = h2opus->dist_hmatrix ? h2opus->dist_hmatrix->getLocalLowRankMemoryUsage() : 0; 1139 #if defined(PETSC_HAVE_CUDA) 1140 matrix_mem[2] = h2opus->dist_hmatrix_gpu ? h2opus->dist_hmatrix_gpu->getLocalDenseMemoryUsage() : 0; 1141 matrix_mem[3] = h2opus->dist_hmatrix_gpu ? h2opus->dist_hmatrix_gpu->getLocalLowRankMemoryUsage() : 0; 1142 #endif 1143 #endif 1144 PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, matrix_mem, rsize, MPI_DOUBLE_PRECISION, MPI_SUM, PetscObjectComm((PetscObject)A))); 1145 PetscCall(PetscViewerASCIIPrintf(view, " Memory consumption GB (CPU): %g (dense) %g (low rank) %g (total)\n", matrix_mem[0], matrix_mem[1], matrix_mem[0] + matrix_mem[1])); 1146 #if defined(PETSC_HAVE_CUDA) 1147 PetscCall(PetscViewerASCIIPrintf(view, " Memory consumption GB (GPU): %g (dense) %g (low rank) %g (total)\n", matrix_mem[2], matrix_mem[3], matrix_mem[2] + matrix_mem[3])); 1148 #endif 1149 } 1150 } 1151 } 1152 vieweps = PETSC_FALSE; 1153 PetscCall(PetscOptionsGetBool(((PetscObject)A)->options, ((PetscObject)A)->prefix, "-mat_h2opus_vieweps", &vieweps, NULL)); 1154 if (vieweps) { 1155 char filename[256]; 1156 const char *name; 1157 1158 PetscCall(PetscObjectGetName((PetscObject)A, &name)); 1159 PetscCall(PetscSNPrintf(filename, sizeof(filename), "%s_structure.eps", name)); 1160 PetscCall(PetscOptionsGetString(((PetscObject)A)->options, ((PetscObject)A)->prefix, "-mat_h2opus_vieweps_filename", filename, sizeof(filename), NULL)); 1161 outputEps(*h2opus->hmatrix, filename); 1162 } 1163 PetscFunctionReturn(PETSC_SUCCESS); 1164 } 1165 1166 static PetscErrorCode MatH2OpusSetCoords_H2OPUS(Mat A, PetscInt spacedim, const PetscReal coords[], PetscBool cdist, MatH2OpusKernelFn *kernel, void *kernelctx) 1167 { 1168 Mat_H2OPUS *h2opus = (Mat_H2OPUS *)A->data; 1169 PetscReal *gcoords; 1170 PetscInt N; 1171 MPI_Comm comm; 1172 PetscMPIInt size; 1173 PetscBool cong; 1174 1175 PetscFunctionBegin; 1176 PetscCall(PetscLayoutSetUp(A->rmap)); 1177 PetscCall(PetscLayoutSetUp(A->cmap)); 1178 PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 1179 PetscCall(MatHasCongruentLayouts(A, &cong)); 1180 PetscCheck(cong, comm, PETSC_ERR_SUP, "Only for square matrices with congruent layouts"); 1181 N = A->rmap->N; 1182 PetscCallMPI(MPI_Comm_size(comm, &size)); 1183 if (spacedim > 0 && size > 1 && cdist) { 1184 PetscSF sf; 1185 MPI_Datatype dtype; 1186 1187 PetscCallMPI(MPI_Type_contiguous(spacedim, MPIU_REAL, &dtype)); 1188 PetscCallMPI(MPI_Type_commit(&dtype)); 1189 1190 PetscCall(PetscSFCreate(comm, &sf)); 1191 PetscCall(PetscSFSetGraphWithPattern(sf, A->rmap, PETSCSF_PATTERN_ALLGATHER)); 1192 PetscCall(PetscMalloc1(spacedim * N, &gcoords)); 1193 PetscCall(PetscSFBcastBegin(sf, dtype, coords, gcoords, MPI_REPLACE)); 1194 PetscCall(PetscSFBcastEnd(sf, dtype, coords, gcoords, MPI_REPLACE)); 1195 PetscCall(PetscSFDestroy(&sf)); 1196 PetscCallMPI(MPI_Type_free(&dtype)); 1197 } else gcoords = (PetscReal *)coords; 1198 1199 delete h2opus->ptcloud; 1200 delete h2opus->kernel; 1201 h2opus->ptcloud = new PetscPointCloud<PetscReal>(spacedim, N, gcoords); 1202 if (kernel) h2opus->kernel = new PetscFunctionGenerator<PetscScalar>(kernel, spacedim, kernelctx); 1203 if (gcoords != coords) PetscCall(PetscFree(gcoords)); 1204 A->preallocated = PETSC_TRUE; 1205 PetscFunctionReturn(PETSC_SUCCESS); 1206 } 1207 1208 #if defined(PETSC_H2OPUS_USE_GPU) 1209 static PetscErrorCode MatBindToCPU_H2OPUS(Mat A, PetscBool flg) 1210 { 1211 PetscMPIInt size; 1212 Mat_H2OPUS *a = (Mat_H2OPUS *)A->data; 1213 1214 PetscFunctionBegin; 1215 PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 1216 if (flg && A->offloadmask == PETSC_OFFLOAD_GPU) { 1217 if (size > 1) { 1218 PetscCheck(a->dist_hmatrix_gpu, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing GPU matrix"); 1219 #if defined(H2OPUS_USE_MPI) 1220 if (!a->dist_hmatrix) a->dist_hmatrix = new DistributedHMatrix(*a->dist_hmatrix_gpu); 1221 else *a->dist_hmatrix = *a->dist_hmatrix_gpu; 1222 #endif 1223 } else { 1224 PetscCheck(a->hmatrix_gpu, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing GPU matrix"); 1225 if (!a->hmatrix) a->hmatrix = new HMatrix(*a->hmatrix_gpu); 1226 else *a->hmatrix = *a->hmatrix_gpu; 1227 } 1228 delete a->hmatrix_gpu; 1229 delete a->dist_hmatrix_gpu; 1230 a->hmatrix_gpu = NULL; 1231 a->dist_hmatrix_gpu = NULL; 1232 A->offloadmask = PETSC_OFFLOAD_CPU; 1233 } else if (!flg && A->offloadmask == PETSC_OFFLOAD_CPU) { 1234 if (size > 1) { 1235 PetscCheck(a->dist_hmatrix, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing CPU matrix"); 1236 #if defined(H2OPUS_USE_MPI) 1237 if (!a->dist_hmatrix_gpu) a->dist_hmatrix_gpu = new DistributedHMatrix_GPU(*a->dist_hmatrix); 1238 else *a->dist_hmatrix_gpu = *a->dist_hmatrix; 1239 #endif 1240 } else { 1241 PetscCheck(a->hmatrix, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing CPU matrix"); 1242 if (!a->hmatrix_gpu) a->hmatrix_gpu = new HMatrix_GPU(*a->hmatrix); 1243 else *a->hmatrix_gpu = *a->hmatrix; 1244 } 1245 delete a->hmatrix; 1246 delete a->dist_hmatrix; 1247 a->hmatrix = NULL; 1248 a->dist_hmatrix = NULL; 1249 A->offloadmask = PETSC_OFFLOAD_GPU; 1250 } 1251 PetscCall(PetscFree(A->defaultvectype)); 1252 if (!flg) { 1253 PetscCall(PetscStrallocpy(VECCUDA, &A->defaultvectype)); 1254 } else { 1255 PetscCall(PetscStrallocpy(VECSTANDARD, &A->defaultvectype)); 1256 } 1257 A->boundtocpu = flg; 1258 PetscFunctionReturn(PETSC_SUCCESS); 1259 } 1260 #endif 1261 1262 /*MC 1263 MATH2OPUS = "h2opus" - A matrix type for hierarchical matrices using the H2Opus package {cite}`zampinibouakaramturkiyyahkniokeyes2022`. 1264 1265 Options Database Key: 1266 . -mat_type h2opus - matrix type to "h2opus" 1267 1268 Level: beginner 1269 1270 Notes: 1271 H2Opus implements hierarchical matrices in the $H^2$ flavour. It supports CPU or NVIDIA GPUs. 1272 1273 For CPU only builds, use `./configure --download-h2opus --download-thrust` to install PETSc to use H2Opus. 1274 In order to run on NVIDIA GPUs, use `./configure --download-h2opus --download-magma --download-kblas`. 1275 1276 .seealso: [](ch_matrices), `Mat`, `MATH2OPUS`, `MATHTOOL`, `MATDENSE`, `MatCreateH2OpusFromKernel()`, `MatCreateH2OpusFromMat()` 1277 M*/ 1278 PETSC_EXTERN PetscErrorCode MatCreate_H2OPUS(Mat A) 1279 { 1280 Mat_H2OPUS *a; 1281 PetscMPIInt size; 1282 1283 PetscFunctionBegin; 1284 #if defined(PETSC_H2OPUS_USE_GPU) 1285 PetscCall(PetscDeviceInitialize(PETSC_DEVICE_CUDA)); 1286 #endif 1287 PetscCall(PetscNew(&a)); 1288 A->data = (void *)a; 1289 1290 a->eta = 0.9; 1291 a->leafsize = 32; 1292 a->basisord = 4; 1293 a->max_rank = 64; 1294 a->bs = 32; 1295 a->rtol = 1.e-4; 1296 a->s = 1.0; 1297 a->norm_max_samples = 10; 1298 a->resize = PETSC_TRUE; /* reallocate after compression */ 1299 #if defined(H2OPUS_USE_MPI) 1300 h2opusCreateDistributedHandleComm(&a->handle, PetscObjectComm((PetscObject)A)); 1301 #else 1302 h2opusCreateHandle(&a->handle); 1303 #endif 1304 PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 1305 PetscCall(PetscObjectChangeTypeName((PetscObject)A, MATH2OPUS)); 1306 PetscCall(PetscMemzero(A->ops, sizeof(struct _MatOps))); 1307 1308 A->ops->destroy = MatDestroy_H2OPUS; 1309 A->ops->view = MatView_H2OPUS; 1310 A->ops->assemblyend = MatAssemblyEnd_H2OPUS; 1311 A->ops->mult = MatMult_H2OPUS; 1312 A->ops->multtranspose = MatMultTranspose_H2OPUS; 1313 A->ops->multadd = MatMultAdd_H2OPUS; 1314 A->ops->multtransposeadd = MatMultTransposeAdd_H2OPUS; 1315 A->ops->scale = MatScale_H2OPUS; 1316 A->ops->duplicate = MatDuplicate_H2OPUS; 1317 A->ops->setfromoptions = MatSetFromOptions_H2OPUS; 1318 A->ops->norm = MatNorm_H2OPUS; 1319 A->ops->zeroentries = MatZeroEntries_H2OPUS; 1320 #if defined(PETSC_H2OPUS_USE_GPU) 1321 A->ops->bindtocpu = MatBindToCPU_H2OPUS; 1322 #endif 1323 1324 PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatProductSetFromOptions_h2opus_seqdense_C", MatProductSetFromOptions_H2OPUS)); 1325 PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatProductSetFromOptions_h2opus_seqdensecuda_C", MatProductSetFromOptions_H2OPUS)); 1326 PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatProductSetFromOptions_h2opus_mpidense_C", MatProductSetFromOptions_H2OPUS)); 1327 PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatProductSetFromOptions_h2opus_mpidensecuda_C", MatProductSetFromOptions_H2OPUS)); 1328 #if defined(PETSC_H2OPUS_USE_GPU) 1329 PetscCall(PetscFree(A->defaultvectype)); 1330 PetscCall(PetscStrallocpy(VECCUDA, &A->defaultvectype)); 1331 #endif 1332 PetscFunctionReturn(PETSC_SUCCESS); 1333 } 1334 1335 /*@ 1336 MatH2OpusOrthogonalize - Orthogonalize the basis tree of a hierarchical matrix. 1337 1338 Input Parameter: 1339 . A - the matrix 1340 1341 Level: intermediate 1342 1343 .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MATH2OPUS`, `MatCreateH2OpusFromMat()`, `MatCreateH2OpusFromKernel()`, `MatH2OpusCompress()` 1344 @*/ 1345 PetscErrorCode MatH2OpusOrthogonalize(Mat A) 1346 { 1347 PetscBool ish2opus; 1348 Mat_H2OPUS *a = (Mat_H2OPUS *)A->data; 1349 PetscMPIInt size; 1350 PetscBool boundtocpu = PETSC_TRUE; 1351 1352 PetscFunctionBegin; 1353 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 1354 PetscValidType(A, 1); 1355 PetscCall(PetscObjectTypeCompare((PetscObject)A, MATH2OPUS, &ish2opus)); 1356 if (!ish2opus) PetscFunctionReturn(PETSC_SUCCESS); 1357 if (a->orthogonal) PetscFunctionReturn(PETSC_SUCCESS); 1358 HLibProfile::clear(); 1359 PetscCall(PetscLogEventBegin(MAT_H2Opus_Orthog, A, 0, 0, 0)); 1360 #if defined(PETSC_H2OPUS_USE_GPU) 1361 boundtocpu = A->boundtocpu; 1362 #endif 1363 PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 1364 if (size > 1) { 1365 if (boundtocpu) { 1366 PetscCheck(a->dist_hmatrix, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing CPU matrix"); 1367 #if defined(H2OPUS_USE_MPI) 1368 distributed_horthog(*a->dist_hmatrix, a->handle); 1369 #endif 1370 #if defined(PETSC_H2OPUS_USE_GPU) 1371 A->offloadmask = PETSC_OFFLOAD_CPU; 1372 } else { 1373 PetscCheck(a->dist_hmatrix_gpu, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing GPU matrix"); 1374 PetscCall(PetscLogGpuTimeBegin()); 1375 #if defined(H2OPUS_USE_MPI) 1376 distributed_horthog(*a->dist_hmatrix_gpu, a->handle); 1377 #endif 1378 PetscCall(PetscLogGpuTimeEnd()); 1379 #endif 1380 } 1381 } else { 1382 #if defined(H2OPUS_USE_MPI) 1383 h2opusHandle_t handle = a->handle->handle; 1384 #else 1385 h2opusHandle_t handle = a->handle; 1386 #endif 1387 if (boundtocpu) { 1388 PetscCheck(a->hmatrix, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing CPU matrix"); 1389 horthog(*a->hmatrix, handle); 1390 #if defined(PETSC_H2OPUS_USE_GPU) 1391 A->offloadmask = PETSC_OFFLOAD_CPU; 1392 } else { 1393 PetscCheck(a->hmatrix_gpu, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing GPU matrix"); 1394 PetscCall(PetscLogGpuTimeBegin()); 1395 horthog(*a->hmatrix_gpu, handle); 1396 PetscCall(PetscLogGpuTimeEnd()); 1397 #endif 1398 } 1399 } 1400 a->orthogonal = PETSC_TRUE; 1401 { /* log flops */ 1402 double gops, time, perf, dev; 1403 HLibProfile::getHorthogPerf(gops, time, perf, dev); 1404 #if defined(PETSC_H2OPUS_USE_GPU) 1405 if (boundtocpu) { 1406 PetscCall(PetscLogFlops(1e9 * gops)); 1407 } else { 1408 PetscCall(PetscLogGpuFlops(1e9 * gops)); 1409 } 1410 #else 1411 PetscCall(PetscLogFlops(1e9 * gops)); 1412 #endif 1413 } 1414 PetscCall(PetscLogEventEnd(MAT_H2Opus_Orthog, A, 0, 0, 0)); 1415 PetscFunctionReturn(PETSC_SUCCESS); 1416 } 1417 1418 /*@ 1419 MatH2OpusCompress - Compress a hierarchical matrix. 1420 1421 Input Parameters: 1422 + A - the matrix 1423 - tol - the absolute truncation threshold 1424 1425 Level: intermediate 1426 1427 .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MATH2OPUS`, `MatCreateH2OpusFromMat()`, `MatCreateH2OpusFromKernel()`, `MatH2OpusOrthogonalize()` 1428 @*/ 1429 PetscErrorCode MatH2OpusCompress(Mat A, PetscReal tol) 1430 { 1431 PetscBool ish2opus; 1432 Mat_H2OPUS *a = (Mat_H2OPUS *)A->data; 1433 PetscMPIInt size; 1434 PetscBool boundtocpu = PETSC_TRUE; 1435 1436 PetscFunctionBegin; 1437 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 1438 PetscValidType(A, 1); 1439 PetscValidLogicalCollectiveReal(A, tol, 2); 1440 PetscCall(PetscObjectTypeCompare((PetscObject)A, MATH2OPUS, &ish2opus)); 1441 if (!ish2opus || tol <= 0.0) PetscFunctionReturn(PETSC_SUCCESS); 1442 PetscCall(MatH2OpusOrthogonalize(A)); 1443 HLibProfile::clear(); 1444 PetscCall(PetscLogEventBegin(MAT_H2Opus_Compress, A, 0, 0, 0)); 1445 #if defined(PETSC_H2OPUS_USE_GPU) 1446 boundtocpu = A->boundtocpu; 1447 #endif 1448 PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 1449 if (size > 1) { 1450 if (boundtocpu) { 1451 PetscCheck(a->dist_hmatrix, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing CPU matrix"); 1452 #if defined(H2OPUS_USE_MPI) 1453 distributed_hcompress(*a->dist_hmatrix, tol, a->handle); 1454 if (a->resize) { 1455 DistributedHMatrix *dist_hmatrix = new DistributedHMatrix(*a->dist_hmatrix); 1456 delete a->dist_hmatrix; 1457 a->dist_hmatrix = dist_hmatrix; 1458 } 1459 #endif 1460 #if defined(PETSC_H2OPUS_USE_GPU) 1461 A->offloadmask = PETSC_OFFLOAD_CPU; 1462 } else { 1463 PetscCheck(a->dist_hmatrix_gpu, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing GPU matrix"); 1464 PetscCall(PetscLogGpuTimeBegin()); 1465 #if defined(H2OPUS_USE_MPI) 1466 distributed_hcompress(*a->dist_hmatrix_gpu, tol, a->handle); 1467 1468 if (a->resize) { 1469 DistributedHMatrix_GPU *dist_hmatrix_gpu = new DistributedHMatrix_GPU(*a->dist_hmatrix_gpu); 1470 delete a->dist_hmatrix_gpu; 1471 a->dist_hmatrix_gpu = dist_hmatrix_gpu; 1472 } 1473 #endif 1474 PetscCall(PetscLogGpuTimeEnd()); 1475 #endif 1476 } 1477 } else { 1478 #if defined(H2OPUS_USE_MPI) 1479 h2opusHandle_t handle = a->handle->handle; 1480 #else 1481 h2opusHandle_t handle = a->handle; 1482 #endif 1483 if (boundtocpu) { 1484 PetscCheck(a->hmatrix, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing CPU matrix"); 1485 hcompress(*a->hmatrix, tol, handle); 1486 1487 if (a->resize) { 1488 HMatrix *hmatrix = new HMatrix(*a->hmatrix); 1489 delete a->hmatrix; 1490 a->hmatrix = hmatrix; 1491 } 1492 #if defined(PETSC_H2OPUS_USE_GPU) 1493 A->offloadmask = PETSC_OFFLOAD_CPU; 1494 } else { 1495 PetscCheck(a->hmatrix_gpu, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing GPU matrix"); 1496 PetscCall(PetscLogGpuTimeBegin()); 1497 hcompress(*a->hmatrix_gpu, tol, handle); 1498 PetscCall(PetscLogGpuTimeEnd()); 1499 1500 if (a->resize) { 1501 HMatrix_GPU *hmatrix_gpu = new HMatrix_GPU(*a->hmatrix_gpu); 1502 delete a->hmatrix_gpu; 1503 a->hmatrix_gpu = hmatrix_gpu; 1504 } 1505 #endif 1506 } 1507 } 1508 { /* log flops */ 1509 double gops, time, perf, dev; 1510 HLibProfile::getHcompressPerf(gops, time, perf, dev); 1511 #if defined(PETSC_H2OPUS_USE_GPU) 1512 if (boundtocpu) { 1513 PetscCall(PetscLogFlops(1e9 * gops)); 1514 } else { 1515 PetscCall(PetscLogGpuFlops(1e9 * gops)); 1516 } 1517 #else 1518 PetscCall(PetscLogFlops(1e9 * gops)); 1519 #endif 1520 } 1521 PetscCall(PetscLogEventEnd(MAT_H2Opus_Compress, A, 0, 0, 0)); 1522 PetscFunctionReturn(PETSC_SUCCESS); 1523 } 1524 1525 /*@ 1526 MatH2OpusSetSamplingMat - Set a matrix to be sampled from matrix-vector products on another matrix to construct a hierarchical matrix. 1527 1528 Input Parameters: 1529 + A - the hierarchical matrix 1530 . B - the matrix to be sampled 1531 . bs - maximum number of samples to be taken concurrently 1532 - tol - relative tolerance for construction 1533 1534 Level: intermediate 1535 1536 Notes: 1537 You need to call `MatAssemblyBegin()` and `MatAssemblyEnd()` to update the hierarchical matrix. 1538 1539 .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MATH2OPUS`, `MatCreateH2OpusFromMat()`, `MatCreateH2OpusFromKernel()`, `MatH2OpusCompress()`, `MatH2OpusOrthogonalize()` 1540 @*/ 1541 PetscErrorCode MatH2OpusSetSamplingMat(Mat A, Mat B, PetscInt bs, PetscReal tol) 1542 { 1543 PetscBool ish2opus; 1544 1545 PetscFunctionBegin; 1546 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 1547 PetscValidType(A, 1); 1548 if (B) PetscValidHeaderSpecific(B, MAT_CLASSID, 2); 1549 PetscValidLogicalCollectiveInt(A, bs, 3); 1550 PetscValidLogicalCollectiveReal(A, tol, 4); 1551 PetscCall(PetscObjectTypeCompare((PetscObject)A, MATH2OPUS, &ish2opus)); 1552 if (ish2opus) { 1553 Mat_H2OPUS *a = (Mat_H2OPUS *)A->data; 1554 1555 if (!a->sampler) a->sampler = new PetscMatrixSampler(); 1556 a->sampler->SetSamplingMat(B); 1557 if (bs > 0) a->bs = bs; 1558 if (tol > 0.) a->rtol = tol; 1559 delete a->kernel; 1560 } 1561 PetscFunctionReturn(PETSC_SUCCESS); 1562 } 1563 1564 /*@C 1565 MatCreateH2OpusFromKernel - Creates a `MATH2OPUS` from a user-supplied kernel. 1566 1567 Input Parameters: 1568 + comm - MPI communicator 1569 . m - number of local rows (or `PETSC_DECIDE` to have calculated if `M` is given) 1570 . n - number of local columns (or `PETSC_DECIDE` to have calculated if `N` is given) 1571 . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 1572 . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 1573 . spacedim - dimension of the space coordinates 1574 . coords - coordinates of the points 1575 . cdist - whether or not coordinates are distributed 1576 . kernel - computational kernel (or `NULL`) 1577 . kernelctx - kernel context 1578 . eta - admissibility condition tolerance 1579 . leafsize - leaf size in cluster tree 1580 - basisord - approximation order for Chebychev interpolation of low-rank blocks 1581 1582 Output Parameter: 1583 . nA - matrix 1584 1585 Options Database Keys: 1586 + -mat_h2opus_leafsize <`PetscInt`> - Leaf size of cluster tree 1587 . -mat_h2opus_eta <`PetscReal`> - Admissibility condition tolerance 1588 . -mat_h2opus_order <`PetscInt`> - Chebychev approximation order 1589 - -mat_h2opus_normsamples <`PetscInt`> - Maximum number of samples to be used when estimating norms 1590 1591 Level: intermediate 1592 1593 .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MATH2OPUS`, `MatCreateH2OpusFromMat()` 1594 @*/ 1595 PetscErrorCode MatCreateH2OpusFromKernel(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt spacedim, const PetscReal coords[], PetscBool cdist, MatH2OpusKernelFn *kernel, void *kernelctx, PetscReal eta, PetscInt leafsize, PetscInt basisord, Mat *nA) 1596 { 1597 Mat A; 1598 Mat_H2OPUS *h2opus; 1599 PetscBool iscpu = PetscDefined(H2OPUS_USE_GPU) ? PETSC_FALSE : PETSC_TRUE; 1600 1601 PetscFunctionBegin; 1602 PetscCheck(m == n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Different row and column local sizes are not supported"); 1603 PetscCall(MatCreate(comm, &A)); 1604 PetscCall(MatSetSizes(A, m, n, M, N)); 1605 PetscCheck(M == N, comm, PETSC_ERR_SUP, "Rectangular matrices are not supported"); 1606 PetscCall(MatSetType(A, MATH2OPUS)); 1607 PetscCall(MatBindToCPU(A, iscpu)); 1608 PetscCall(MatH2OpusSetCoords_H2OPUS(A, spacedim, coords, cdist, kernel, kernelctx)); 1609 1610 h2opus = (Mat_H2OPUS *)A->data; 1611 if (eta > 0.) h2opus->eta = eta; 1612 if (leafsize > 0) h2opus->leafsize = leafsize; 1613 if (basisord > 0) h2opus->basisord = basisord; 1614 1615 *nA = A; 1616 PetscFunctionReturn(PETSC_SUCCESS); 1617 } 1618 1619 /*@ 1620 MatCreateH2OpusFromMat - Creates a `MATH2OPUS` sampling from a user-supplied operator. 1621 1622 Input Parameters: 1623 + B - the matrix to be sampled 1624 . spacedim - dimension of the space coordinates 1625 . coords - coordinates of the points 1626 . cdist - whether or not coordinates are distributed 1627 . eta - admissibility condition tolerance 1628 . leafsize - leaf size in cluster tree 1629 . maxrank - maximum rank allowed 1630 . bs - maximum number of samples to be taken concurrently 1631 - rtol - relative tolerance for construction 1632 1633 Output Parameter: 1634 . nA - matrix 1635 1636 Options Database Keys: 1637 + -mat_h2opus_leafsize <`PetscInt`> - Leaf size of cluster tree 1638 . -mat_h2opus_eta <`PetscReal`> - Admissibility condition tolerance 1639 . -mat_h2opus_maxrank <`PetscInt`> - Maximum rank when constructed from matvecs 1640 . -mat_h2opus_samples <`PetscInt`> - Maximum number of samples to be taken concurrently when constructing from matvecs 1641 . -mat_h2opus_rtol <`PetscReal`> - Relative tolerance for construction from sampling 1642 . -mat_h2opus_check <`PetscBool`> - Check error when constructing from sampling during MatAssemblyEnd() 1643 . -mat_h2opus_hara_verbose <`PetscBool`> - Verbose output from hara construction 1644 - -mat_h2opus_normsamples <`PetscInt`> - Maximum number of samples to be when estimating norms 1645 1646 Level: intermediate 1647 1648 Note: 1649 Not available in parallel 1650 1651 .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MATH2OPUS`, `MatCreateH2OpusFromKernel()` 1652 @*/ 1653 PetscErrorCode MatCreateH2OpusFromMat(Mat B, PetscInt spacedim, const PetscReal coords[], PetscBool cdist, PetscReal eta, PetscInt leafsize, PetscInt maxrank, PetscInt bs, PetscReal rtol, Mat *nA) 1654 { 1655 Mat A; 1656 Mat_H2OPUS *h2opus; 1657 MPI_Comm comm; 1658 PetscBool boundtocpu = PETSC_TRUE; 1659 1660 PetscFunctionBegin; 1661 PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 1662 PetscValidLogicalCollectiveInt(B, spacedim, 2); 1663 PetscValidLogicalCollectiveBool(B, cdist, 4); 1664 PetscValidLogicalCollectiveReal(B, eta, 5); 1665 PetscValidLogicalCollectiveInt(B, leafsize, 6); 1666 PetscValidLogicalCollectiveInt(B, maxrank, 7); 1667 PetscValidLogicalCollectiveInt(B, bs, 8); 1668 PetscValidLogicalCollectiveReal(B, rtol, 9); 1669 PetscAssertPointer(nA, 10); 1670 PetscCall(PetscObjectGetComm((PetscObject)B, &comm)); 1671 PetscCheck(B->rmap->n == B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Different row and column local sizes are not supported"); 1672 PetscCheck(B->rmap->N == B->cmap->N, comm, PETSC_ERR_SUP, "Rectangular matrices are not supported"); 1673 PetscCall(MatCreate(comm, &A)); 1674 PetscCall(MatSetSizes(A, B->rmap->n, B->cmap->n, B->rmap->N, B->cmap->N)); 1675 #if defined(PETSC_H2OPUS_USE_GPU) 1676 { 1677 VecType vtype; 1678 PetscBool isstd, iscuda, iskok; 1679 1680 PetscCall(MatGetVecType(B, &vtype)); 1681 PetscCall(PetscStrcmpAny(vtype, &isstd, VECSTANDARD, VECSEQ, VECMPI, "")); 1682 PetscCall(PetscStrcmpAny(vtype, &iscuda, VECCUDA, VECSEQCUDA, VECMPICUDA, "")); 1683 PetscCall(PetscStrcmpAny(vtype, &iskok, VECKOKKOS, VECSEQKOKKOS, VECMPIKOKKOS, "")); 1684 PetscCheck(isstd || iscuda || iskok, comm, PETSC_ERR_SUP, "Not for type %s", vtype); 1685 if (iscuda && !B->boundtocpu) boundtocpu = PETSC_FALSE; 1686 if (iskok && PetscDefined(HAVE_MACRO_KOKKOS_ENABLE_CUDA)) boundtocpu = PETSC_FALSE; 1687 } 1688 #endif 1689 PetscCall(MatSetType(A, MATH2OPUS)); 1690 PetscCall(MatBindToCPU(A, boundtocpu)); 1691 if (spacedim) PetscCall(MatH2OpusSetCoords_H2OPUS(A, spacedim, coords, cdist, NULL, NULL)); 1692 PetscCall(MatPropagateSymmetryOptions(B, A)); 1693 /* PetscCheck(A->symmetric,comm,PETSC_ERR_SUP,"Unsymmetric sampling does not work"); */ 1694 1695 h2opus = (Mat_H2OPUS *)A->data; 1696 h2opus->sampler = new PetscMatrixSampler(B); 1697 if (eta > 0.) h2opus->eta = eta; 1698 if (leafsize > 0) h2opus->leafsize = leafsize; 1699 if (maxrank > 0) h2opus->max_rank = maxrank; 1700 if (bs > 0) h2opus->bs = bs; 1701 if (rtol > 0.) h2opus->rtol = rtol; 1702 *nA = A; 1703 A->preallocated = PETSC_TRUE; 1704 PetscFunctionReturn(PETSC_SUCCESS); 1705 } 1706 1707 /*@ 1708 MatH2OpusGetIndexMap - Access reordering index set. 1709 1710 Input Parameter: 1711 . A - the matrix 1712 1713 Output Parameter: 1714 . indexmap - the index set for the reordering 1715 1716 Level: intermediate 1717 1718 .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MATH2OPUS`, `MatCreateH2OpusFromMat()`, `MatCreateH2OpusFromKernel()` 1719 @*/ 1720 PetscErrorCode MatH2OpusGetIndexMap(Mat A, IS *indexmap) 1721 { 1722 PetscBool ish2opus; 1723 Mat_H2OPUS *a = (Mat_H2OPUS *)A->data; 1724 1725 PetscFunctionBegin; 1726 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 1727 PetscValidType(A, 1); 1728 PetscAssertPointer(indexmap, 2); 1729 PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 1730 PetscCall(PetscObjectTypeCompare((PetscObject)A, MATH2OPUS, &ish2opus)); 1731 PetscCheck(ish2opus, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name); 1732 *indexmap = a->h2opus_indexmap; 1733 PetscFunctionReturn(PETSC_SUCCESS); 1734 } 1735 1736 /*@ 1737 MatH2OpusMapVec - Maps a vector between PETSc and H2Opus ordering 1738 1739 Input Parameters: 1740 + A - the matrix 1741 . nativetopetsc - if true, maps from H2Opus ordering to PETSc ordering. If false, applies the reverse map 1742 - in - the vector to be mapped 1743 1744 Output Parameter: 1745 . out - the newly created mapped vector 1746 1747 Level: intermediate 1748 1749 .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MATH2OPUS`, `MatCreateH2OpusFromMat()`, `MatCreateH2OpusFromKernel()` 1750 @*/ 1751 PetscErrorCode MatH2OpusMapVec(Mat A, PetscBool nativetopetsc, Vec in, Vec *out) 1752 { 1753 PetscBool ish2opus; 1754 Mat_H2OPUS *a = (Mat_H2OPUS *)A->data; 1755 PetscScalar *xin, *xout; 1756 PetscBool nm; 1757 1758 PetscFunctionBegin; 1759 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 1760 PetscValidType(A, 1); 1761 PetscValidLogicalCollectiveBool(A, nativetopetsc, 2); 1762 PetscValidHeaderSpecific(in, VEC_CLASSID, 3); 1763 PetscAssertPointer(out, 4); 1764 PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 1765 PetscCall(PetscObjectTypeCompare((PetscObject)A, MATH2OPUS, &ish2opus)); 1766 PetscCheck(ish2opus, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name); 1767 nm = a->nativemult; 1768 PetscCall(MatH2OpusSetNativeMult(A, (PetscBool)!nativetopetsc)); 1769 PetscCall(MatCreateVecs(A, out, NULL)); 1770 PetscCall(MatH2OpusSetNativeMult(A, nm)); 1771 if (!a->sf) { /* same ordering */ 1772 PetscCall(VecCopy(in, *out)); 1773 PetscFunctionReturn(PETSC_SUCCESS); 1774 } 1775 PetscCall(VecGetArrayRead(in, (const PetscScalar **)&xin)); 1776 PetscCall(VecGetArrayWrite(*out, &xout)); 1777 if (nativetopetsc) { 1778 PetscCall(PetscSFReduceBegin(a->sf, MPIU_SCALAR, xin, xout, MPI_REPLACE)); 1779 PetscCall(PetscSFReduceEnd(a->sf, MPIU_SCALAR, xin, xout, MPI_REPLACE)); 1780 } else { 1781 PetscCall(PetscSFBcastBegin(a->sf, MPIU_SCALAR, xin, xout, MPI_REPLACE)); 1782 PetscCall(PetscSFBcastEnd(a->sf, MPIU_SCALAR, xin, xout, MPI_REPLACE)); 1783 } 1784 PetscCall(VecRestoreArrayRead(in, (const PetscScalar **)&xin)); 1785 PetscCall(VecRestoreArrayWrite(*out, &xout)); 1786 PetscFunctionReturn(PETSC_SUCCESS); 1787 } 1788 1789 /*@ 1790 MatH2OpusLowRankUpdate - Perform a low-rank update of the form $ A = A + s * U * V^T $ 1791 1792 Input Parameters: 1793 + A - the hierarchical `MATH2OPUS` matrix 1794 . s - the scaling factor 1795 . U - the dense low-rank update matrix 1796 - V - (optional) the dense low-rank update matrix (if `NULL`, then `V` = `U` is assumed) 1797 1798 Note: 1799 The `U` and `V` matrices must be in `MATDENSE` dense format 1800 1801 Level: intermediate 1802 1803 .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MATH2OPUS`, `MatCreateH2OpusFromMat()`, `MatCreateH2OpusFromKernel()`, `MatH2OpusCompress()`, `MatH2OpusOrthogonalize()`, `MATDENSE` 1804 @*/ 1805 PetscErrorCode MatH2OpusLowRankUpdate(Mat A, Mat U, Mat V, PetscScalar s) 1806 { 1807 PetscBool flg; 1808 1809 PetscFunctionBegin; 1810 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 1811 PetscValidType(A, 1); 1812 PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 1813 PetscValidHeaderSpecific(U, MAT_CLASSID, 2); 1814 PetscCheckSameComm(A, 1, U, 2); 1815 if (V) { 1816 PetscValidHeaderSpecific(V, MAT_CLASSID, 3); 1817 PetscCheckSameComm(A, 1, V, 3); 1818 } 1819 PetscValidLogicalCollectiveScalar(A, s, 4); 1820 1821 if (!V) V = U; 1822 PetscCheck(U->cmap->N == V->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONGSTATE, "Non matching rank update %" PetscInt_FMT " != %" PetscInt_FMT, U->cmap->N, V->cmap->N); 1823 if (!U->cmap->N) PetscFunctionReturn(PETSC_SUCCESS); 1824 PetscCall(PetscLayoutCompare(U->rmap, A->rmap, &flg)); 1825 PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONGSTATE, "A and U must have the same row layout"); 1826 PetscCall(PetscLayoutCompare(V->rmap, A->cmap, &flg)); 1827 PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONGSTATE, "A column layout must match V row column layout"); 1828 PetscCall(PetscObjectTypeCompare((PetscObject)A, MATH2OPUS, &flg)); 1829 if (flg) { 1830 Mat_H2OPUS *a = (Mat_H2OPUS *)A->data; 1831 const PetscScalar *u, *v, *uu, *vv; 1832 PetscInt ldu, ldv; 1833 PetscMPIInt size; 1834 #if defined(H2OPUS_USE_MPI) 1835 h2opusHandle_t handle = a->handle->handle; 1836 #else 1837 h2opusHandle_t handle = a->handle; 1838 #endif 1839 PetscBool usesf = (PetscBool)(a->sf && !a->nativemult); 1840 PetscSF usf, vsf; 1841 1842 PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 1843 PetscCheck(size <= 1, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not yet implemented in parallel"); 1844 PetscCall(PetscLogEventBegin(MAT_H2Opus_LR, A, 0, 0, 0)); 1845 PetscCall(PetscObjectBaseTypeCompareAny((PetscObject)U, &flg, MATSEQDENSE, MATMPIDENSE, "")); 1846 PetscCheck(flg, PetscObjectComm((PetscObject)U), PETSC_ERR_SUP, "Not for U of type %s", ((PetscObject)U)->type_name); 1847 PetscCall(PetscObjectBaseTypeCompareAny((PetscObject)V, &flg, MATSEQDENSE, MATMPIDENSE, "")); 1848 PetscCheck(flg, PetscObjectComm((PetscObject)V), PETSC_ERR_SUP, "Not for V of type %s", ((PetscObject)V)->type_name); 1849 PetscCall(MatDenseGetLDA(U, &ldu)); 1850 PetscCall(MatDenseGetLDA(V, &ldv)); 1851 PetscCall(MatBoundToCPU(A, &flg)); 1852 if (usesf) { 1853 PetscInt n; 1854 1855 PetscCall(MatDenseGetH2OpusStridedSF(U, a->sf, &usf)); 1856 PetscCall(MatDenseGetH2OpusStridedSF(V, a->sf, &vsf)); 1857 PetscCall(MatH2OpusResizeBuffers_Private(A, U->cmap->N, V->cmap->N)); 1858 PetscCall(PetscSFGetGraph(a->sf, NULL, &n, NULL, NULL)); 1859 ldu = n; 1860 ldv = n; 1861 } 1862 if (flg) { 1863 PetscCheck(a->hmatrix, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing CPU matrix"); 1864 PetscCall(MatDenseGetArrayRead(U, &u)); 1865 PetscCall(MatDenseGetArrayRead(V, &v)); 1866 if (usesf) { 1867 vv = MatH2OpusGetThrustPointer(*a->yy); 1868 PetscCall(PetscSFBcastBegin(vsf, MPIU_SCALAR, v, (PetscScalar *)vv, MPI_REPLACE)); 1869 PetscCall(PetscSFBcastEnd(vsf, MPIU_SCALAR, v, (PetscScalar *)vv, MPI_REPLACE)); 1870 if (U != V) { 1871 uu = MatH2OpusGetThrustPointer(*a->xx); 1872 PetscCall(PetscSFBcastBegin(usf, MPIU_SCALAR, u, (PetscScalar *)uu, MPI_REPLACE)); 1873 PetscCall(PetscSFBcastEnd(usf, MPIU_SCALAR, u, (PetscScalar *)uu, MPI_REPLACE)); 1874 } else uu = vv; 1875 } else { 1876 uu = u; 1877 vv = v; 1878 } 1879 hlru_global(*a->hmatrix, uu, ldu, vv, ldv, U->cmap->N, s, handle); 1880 PetscCall(MatDenseRestoreArrayRead(U, &u)); 1881 PetscCall(MatDenseRestoreArrayRead(V, &v)); 1882 } else { 1883 #if defined(PETSC_H2OPUS_USE_GPU) 1884 PetscBool flgU, flgV; 1885 1886 PetscCheck(a->hmatrix_gpu, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing GPU matrix"); 1887 PetscCall(PetscObjectTypeCompareAny((PetscObject)U, &flgU, MATSEQDENSE, MATMPIDENSE, "")); 1888 if (flgU) PetscCall(MatConvert(U, MATDENSECUDA, MAT_INPLACE_MATRIX, &U)); 1889 PetscCall(PetscObjectTypeCompareAny((PetscObject)V, &flgV, MATSEQDENSE, MATMPIDENSE, "")); 1890 if (flgV) PetscCall(MatConvert(V, MATDENSECUDA, MAT_INPLACE_MATRIX, &V)); 1891 PetscCall(MatDenseCUDAGetArrayRead(U, &u)); 1892 PetscCall(MatDenseCUDAGetArrayRead(V, &v)); 1893 if (usesf) { 1894 vv = MatH2OpusGetThrustPointer(*a->yy_gpu); 1895 PetscCall(PetscSFBcastBegin(vsf, MPIU_SCALAR, v, (PetscScalar *)vv, MPI_REPLACE)); 1896 PetscCall(PetscSFBcastEnd(vsf, MPIU_SCALAR, v, (PetscScalar *)vv, MPI_REPLACE)); 1897 if (U != V) { 1898 uu = MatH2OpusGetThrustPointer(*a->xx_gpu); 1899 PetscCall(PetscSFBcastBegin(usf, MPIU_SCALAR, u, (PetscScalar *)uu, MPI_REPLACE)); 1900 PetscCall(PetscSFBcastEnd(usf, MPIU_SCALAR, u, (PetscScalar *)uu, MPI_REPLACE)); 1901 } else uu = vv; 1902 } else { 1903 uu = u; 1904 vv = v; 1905 } 1906 #else 1907 SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "This should not happen"); 1908 #endif 1909 hlru_global(*a->hmatrix_gpu, uu, ldu, vv, ldv, U->cmap->N, s, handle); 1910 #if defined(PETSC_H2OPUS_USE_GPU) 1911 PetscCall(MatDenseCUDARestoreArrayRead(U, &u)); 1912 PetscCall(MatDenseCUDARestoreArrayRead(V, &v)); 1913 if (flgU) PetscCall(MatConvert(U, MATDENSE, MAT_INPLACE_MATRIX, &U)); 1914 if (flgV) PetscCall(MatConvert(V, MATDENSE, MAT_INPLACE_MATRIX, &V)); 1915 #endif 1916 } 1917 PetscCall(PetscLogEventEnd(MAT_H2Opus_LR, A, 0, 0, 0)); 1918 a->orthogonal = PETSC_FALSE; 1919 } 1920 PetscFunctionReturn(PETSC_SUCCESS); 1921 } 1922 #endif 1923