1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/
2c6db04a5SJed Brown #include <../src/mat/impls/sbaij/mpi/mpisbaij.h>
3c6db04a5SJed Brown #include <../src/mat/impls/sbaij/seq/sbaij.h>
4c6db04a5SJed Brown #include <petscblaslapack.h>
5a30f8f8cSSatish Balay
MatDestroy_MPISBAIJ(Mat mat)666976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPISBAIJ(Mat mat)
726cec326SBarry Smith {
826cec326SBarry Smith Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
926cec326SBarry Smith
1026cec326SBarry Smith PetscFunctionBegin;
1126cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
1226cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash));
1326cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->bstash));
1426cec326SBarry Smith PetscCall(MatDestroy(&baij->A));
1526cec326SBarry Smith PetscCall(MatDestroy(&baij->B));
1626cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
1726cec326SBarry Smith PetscCall(PetscHMapIDestroy(&baij->colmap));
1826cec326SBarry Smith #else
1926cec326SBarry Smith PetscCall(PetscFree(baij->colmap));
2026cec326SBarry Smith #endif
2126cec326SBarry Smith PetscCall(PetscFree(baij->garray));
2226cec326SBarry Smith PetscCall(VecDestroy(&baij->lvec));
2326cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->Mvctx));
2426cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec0));
2526cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec0b));
2626cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec1));
2726cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec1a));
2826cec326SBarry Smith PetscCall(VecDestroy(&baij->slvec1b));
2926cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->sMvctx));
3026cec326SBarry Smith PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
3126cec326SBarry Smith PetscCall(PetscFree(baij->barray));
3226cec326SBarry Smith PetscCall(PetscFree(baij->hd));
3326cec326SBarry Smith PetscCall(VecDestroy(&baij->diag));
3426cec326SBarry Smith PetscCall(VecDestroy(&baij->bb1));
3526cec326SBarry Smith PetscCall(VecDestroy(&baij->xx1));
3626cec326SBarry Smith #if defined(PETSC_USE_REAL_MAT_SINGLE)
3726cec326SBarry Smith PetscCall(PetscFree(baij->setvaluescopy));
3826cec326SBarry Smith #endif
3926cec326SBarry Smith PetscCall(PetscFree(baij->in_loc));
4026cec326SBarry Smith PetscCall(PetscFree(baij->v_loc));
4126cec326SBarry Smith PetscCall(PetscFree(baij->rangebs));
4226cec326SBarry Smith PetscCall(PetscFree(mat->data));
4326cec326SBarry Smith
4426cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
4526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
4626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
4726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocation_C", NULL));
4826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPISBAIJSetPreallocationCSR_C", NULL));
4926cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL)
5026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_elemental_C", NULL));
5126cec326SBarry Smith #endif
52d1a032dbSPierre Jolivet #if defined(PETSC_HAVE_SCALAPACK) && (defined(PETSC_USE_REAL_SINGLE) || defined(PETSC_USE_REAL_DOUBLE))
5326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_scalapack_C", NULL));
5426cec326SBarry Smith #endif
5526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpiaij_C", NULL));
5626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpisbaij_mpibaij_C", NULL));
5726cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS);
5826cec326SBarry Smith }
5926cec326SBarry Smith
6026cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), MatAssemblyEnd_MPI_Hash(), MatSetUp_MPI_Hash() */
6126cec326SBarry Smith #define TYPE SBAIJ
6226cec326SBarry Smith #define TYPE_SBAIJ
6326cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h"
6426cec326SBarry Smith #undef TYPE
6526cec326SBarry Smith #undef TYPE_SBAIJ
6626cec326SBarry Smith
676214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
68cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Elemental(Mat, MatType, MatReuse, Mat *);
696214f412SHong Zhang #endif
70d1a032dbSPierre Jolivet #if defined(PETSC_HAVE_SCALAPACK) && (defined(PETSC_USE_REAL_SINGLE) || defined(PETSC_USE_REAL_DOUBLE))
71d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_SBAIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *);
72d24d4204SJose E. Roman #endif
73b147fbf3SStefano Zampini
74b147fbf3SStefano Zampini /* This could be moved to matimpl.h */
MatPreallocateWithMats_Private(Mat B,PetscInt nm,Mat X[],PetscBool symm[],PetscBool fill)75d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatPreallocateWithMats_Private(Mat B, PetscInt nm, Mat X[], PetscBool symm[], PetscBool fill)
76d71ae5a4SJacob Faibussowitsch {
77b147fbf3SStefano Zampini Mat preallocator;
78b147fbf3SStefano Zampini PetscInt r, rstart, rend;
79b147fbf3SStefano Zampini PetscInt bs, i, m, n, M, N;
80b147fbf3SStefano Zampini PetscBool cong = PETSC_TRUE;
81b147fbf3SStefano Zampini
82b147fbf3SStefano Zampini PetscFunctionBegin;
83b147fbf3SStefano Zampini PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
84b147fbf3SStefano Zampini PetscValidLogicalCollectiveInt(B, nm, 2);
85b147fbf3SStefano Zampini for (i = 0; i < nm; i++) {
86b147fbf3SStefano Zampini PetscValidHeaderSpecific(X[i], MAT_CLASSID, 3);
879566063dSJacob Faibussowitsch PetscCall(PetscLayoutCompare(B->rmap, X[i]->rmap, &cong));
885f80ce2aSJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for different layouts");
89b147fbf3SStefano Zampini }
90b147fbf3SStefano Zampini PetscValidLogicalCollectiveBool(B, fill, 5);
919566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(B, &bs));
929566063dSJacob Faibussowitsch PetscCall(MatGetSize(B, &M, &N));
939566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(B, &m, &n));
949566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &preallocator));
959566063dSJacob Faibussowitsch PetscCall(MatSetType(preallocator, MATPREALLOCATOR));
969566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(preallocator, bs));
979566063dSJacob Faibussowitsch PetscCall(MatSetSizes(preallocator, m, n, M, N));
989566063dSJacob Faibussowitsch PetscCall(MatSetUp(preallocator));
999566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(preallocator, &rstart, &rend));
100b147fbf3SStefano Zampini for (r = rstart; r < rend; ++r) {
101b147fbf3SStefano Zampini PetscInt ncols;
102b147fbf3SStefano Zampini const PetscInt *row;
103b147fbf3SStefano Zampini const PetscScalar *vals;
104b147fbf3SStefano Zampini
105b147fbf3SStefano Zampini for (i = 0; i < nm; i++) {
1069566063dSJacob Faibussowitsch PetscCall(MatGetRow(X[i], r, &ncols, &row, &vals));
1079566063dSJacob Faibussowitsch PetscCall(MatSetValues(preallocator, 1, &r, ncols, row, vals, INSERT_VALUES));
10848a46eb9SPierre Jolivet if (symm && symm[i]) PetscCall(MatSetValues(preallocator, ncols, row, 1, &r, vals, INSERT_VALUES));
1099566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(X[i], r, &ncols, &row, &vals));
110b147fbf3SStefano Zampini }
111b147fbf3SStefano Zampini }
1129566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY));
1139566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY));
1149566063dSJacob Faibussowitsch PetscCall(MatPreallocatorPreallocate(preallocator, fill, B));
1159566063dSJacob Faibussowitsch PetscCall(MatDestroy(&preallocator));
1163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
117b147fbf3SStefano Zampini }
118b147fbf3SStefano Zampini
MatConvert_MPISBAIJ_Basic(Mat A,MatType newtype,MatReuse reuse,Mat * newmat)119d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPISBAIJ_Basic(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
120d71ae5a4SJacob Faibussowitsch {
121b147fbf3SStefano Zampini Mat B;
122b147fbf3SStefano Zampini PetscInt r;
123b147fbf3SStefano Zampini
124b147fbf3SStefano Zampini PetscFunctionBegin;
125b147fbf3SStefano Zampini if (reuse != MAT_REUSE_MATRIX) {
12628d58a37SPierre Jolivet PetscBool symm = PETSC_TRUE, isdense;
127b147fbf3SStefano Zampini PetscInt bs;
128b147fbf3SStefano Zampini
1299566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
1309566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N));
1319566063dSJacob Faibussowitsch PetscCall(MatSetType(B, newtype));
1329566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(A, &bs));
1339566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B, bs));
1349566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap));
1359566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap));
1369566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isdense, MATSEQDENSE, MATMPIDENSE, MATSEQDENSECUDA, ""));
13728d58a37SPierre Jolivet if (!isdense) {
1389566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A));
1399566063dSJacob Faibussowitsch PetscCall(MatPreallocateWithMats_Private(B, 1, &A, &symm, PETSC_TRUE));
1409566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A));
14128d58a37SPierre Jolivet } else {
1429566063dSJacob Faibussowitsch PetscCall(MatSetUp(B));
14328d58a37SPierre Jolivet }
14428d58a37SPierre Jolivet } else {
14528d58a37SPierre Jolivet B = *newmat;
1469566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(B));
14728d58a37SPierre Jolivet }
148b147fbf3SStefano Zampini
1499566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A));
150b147fbf3SStefano Zampini for (r = A->rmap->rstart; r < A->rmap->rend; r++) {
151b147fbf3SStefano Zampini PetscInt ncols;
152b147fbf3SStefano Zampini const PetscInt *row;
153b147fbf3SStefano Zampini const PetscScalar *vals;
154b147fbf3SStefano Zampini
1559566063dSJacob Faibussowitsch PetscCall(MatGetRow(A, r, &ncols, &row, &vals));
1569566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, 1, &r, ncols, row, vals, INSERT_VALUES));
157eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
158b94d7dedSBarry Smith if (A->hermitian == PETSC_BOOL3_TRUE) {
159eb1ec7c1SStefano Zampini PetscInt i;
16048a46eb9SPierre Jolivet for (i = 0; i < ncols; i++) PetscCall(MatSetValue(B, row[i], r, PetscConj(vals[i]), INSERT_VALUES));
161eb1ec7c1SStefano Zampini } else {
1629566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES));
163eb1ec7c1SStefano Zampini }
164eb1ec7c1SStefano Zampini #else
1659566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncols, row, 1, &r, vals, INSERT_VALUES));
166eb1ec7c1SStefano Zampini #endif
1679566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(A, r, &ncols, &row, &vals));
168b147fbf3SStefano Zampini }
1699566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A));
1709566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
1719566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
172b147fbf3SStefano Zampini
173b147fbf3SStefano Zampini if (reuse == MAT_INPLACE_MATRIX) {
1749566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B));
175b147fbf3SStefano Zampini } else {
176b147fbf3SStefano Zampini *newmat = B;
177b147fbf3SStefano Zampini }
1783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
179b147fbf3SStefano Zampini }
180b147fbf3SStefano Zampini
MatStoreValues_MPISBAIJ(Mat mat)18166976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPISBAIJ(Mat mat)
182d71ae5a4SJacob Faibussowitsch {
183f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data;
184a30f8f8cSSatish Balay
185a30f8f8cSSatish Balay PetscFunctionBegin;
1869566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A));
1879566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B));
1883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
189a30f8f8cSSatish Balay }
190a30f8f8cSSatish Balay
MatRetrieveValues_MPISBAIJ(Mat mat)19166976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPISBAIJ(Mat mat)
192d71ae5a4SJacob Faibussowitsch {
193f3566a2aSHong Zhang Mat_MPISBAIJ *aij = (Mat_MPISBAIJ *)mat->data;
194a30f8f8cSSatish Balay
195a30f8f8cSSatish Balay PetscFunctionBegin;
1969566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A));
1979566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B));
1983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
199a30f8f8cSSatish Balay }
200a30f8f8cSSatish Balay
201d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, orow, ocol) \
202a8f51744SPierre Jolivet do { \
203a30f8f8cSSatish Balay brow = row / bs; \
2049371c9d4SSatish Balay rp = aj + ai[brow]; \
2059371c9d4SSatish Balay ap = aa + bs2 * ai[brow]; \
2069371c9d4SSatish Balay rmax = aimax[brow]; \
2079371c9d4SSatish Balay nrow = ailen[brow]; \
208a30f8f8cSSatish Balay bcol = col / bs; \
2099371c9d4SSatish Balay ridx = row % bs; \
2109371c9d4SSatish Balay cidx = col % bs; \
2119371c9d4SSatish Balay low = 0; \
2129371c9d4SSatish Balay high = nrow; \
213a30f8f8cSSatish Balay while (high - low > 3) { \
214a30f8f8cSSatish Balay t = (low + high) / 2; \
215a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \
216a30f8f8cSSatish Balay else low = t; \
217a30f8f8cSSatish Balay } \
218a30f8f8cSSatish Balay for (_i = low; _i < high; _i++) { \
219a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \
220a30f8f8cSSatish Balay if (rp[_i] == bcol) { \
221a30f8f8cSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \
222a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \
223a30f8f8cSSatish Balay else *bap = value; \
224a30f8f8cSSatish Balay goto a_noinsert; \
225a30f8f8cSSatish Balay } \
226a30f8f8cSSatish Balay } \
227a30f8f8cSSatish Balay if (a->nonew == 1) goto a_noinsert; \
2285f80ce2aSJacob Faibussowitsch PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
229fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \
230a30f8f8cSSatish Balay N = nrow++ - 1; \
231a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \
2329566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
2339566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
2349566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
235a30f8f8cSSatish Balay rp[_i] = bcol; \
236a30f8f8cSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \
237a30f8f8cSSatish Balay a_noinsert:; \
238a30f8f8cSSatish Balay ailen[brow] = nrow; \
239a8f51744SPierre Jolivet } while (0)
240e5e170daSBarry Smith
241d40312a9SBarry Smith #define MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, orow, ocol) \
242a8f51744SPierre Jolivet do { \
243a30f8f8cSSatish Balay brow = row / bs; \
2449371c9d4SSatish Balay rp = bj + bi[brow]; \
2459371c9d4SSatish Balay ap = ba + bs2 * bi[brow]; \
2469371c9d4SSatish Balay rmax = bimax[brow]; \
2479371c9d4SSatish Balay nrow = bilen[brow]; \
248a30f8f8cSSatish Balay bcol = col / bs; \
2499371c9d4SSatish Balay ridx = row % bs; \
2509371c9d4SSatish Balay cidx = col % bs; \
2519371c9d4SSatish Balay low = 0; \
2529371c9d4SSatish Balay high = nrow; \
253a30f8f8cSSatish Balay while (high - low > 3) { \
254a30f8f8cSSatish Balay t = (low + high) / 2; \
255a30f8f8cSSatish Balay if (rp[t] > bcol) high = t; \
256a30f8f8cSSatish Balay else low = t; \
257a30f8f8cSSatish Balay } \
258a30f8f8cSSatish Balay for (_i = low; _i < high; _i++) { \
259a30f8f8cSSatish Balay if (rp[_i] > bcol) break; \
260a30f8f8cSSatish Balay if (rp[_i] == bcol) { \
261a30f8f8cSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \
262a30f8f8cSSatish Balay if (addv == ADD_VALUES) *bap += value; \
263a30f8f8cSSatish Balay else *bap = value; \
264a30f8f8cSSatish Balay goto b_noinsert; \
265a30f8f8cSSatish Balay } \
266a30f8f8cSSatish Balay } \
267a30f8f8cSSatish Balay if (b->nonew == 1) goto b_noinsert; \
2685f80ce2aSJacob Faibussowitsch PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
269fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \
270a30f8f8cSSatish Balay N = nrow++ - 1; \
271a30f8f8cSSatish Balay /* shift up all the later entries in this row */ \
2729566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
2739566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
2749566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
275a30f8f8cSSatish Balay rp[_i] = bcol; \
276a30f8f8cSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \
277a30f8f8cSSatish Balay b_noinsert:; \
278a30f8f8cSSatish Balay bilen[brow] = nrow; \
279a8f51744SPierre Jolivet } while (0)
280a30f8f8cSSatish Balay
281a30f8f8cSSatish Balay /* Only add/insert a(i,j) with i<=j (blocks).
282da81f932SPierre Jolivet Any a(i,j) with i>j input by user is ignored or generates an error
283a30f8f8cSSatish Balay */
MatSetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)28466976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
285d71ae5a4SJacob Faibussowitsch {
286a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
287a30f8f8cSSatish Balay MatScalar value;
288ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented;
2891302d50aSBarry Smith PetscInt i, j, row, col;
290d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart;
291d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart;
292d0f46423SBarry Smith PetscInt cend_orig = mat->cmap->rend, bs = mat->rmap->bs;
293a30f8f8cSSatish Balay
294a30f8f8cSSatish Balay /* Some Variables required in the macro */
295a30f8f8cSSatish Balay Mat A = baij->A;
29657508eceSPierre Jolivet Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data;
2971302d50aSBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
298a30f8f8cSSatish Balay MatScalar *aa = a->a;
299a30f8f8cSSatish Balay
300a30f8f8cSSatish Balay Mat B = baij->B;
30157508eceSPierre Jolivet Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)B->data;
3021302d50aSBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j;
303a30f8f8cSSatish Balay MatScalar *ba = b->a;
304a30f8f8cSSatish Balay
3051302d50aSBarry Smith PetscInt *rp, ii, nrow, _i, rmax, N, brow, bcol;
3061302d50aSBarry Smith PetscInt low, high, t, ridx, cidx, bs2 = a->bs2;
307a30f8f8cSSatish Balay MatScalar *ap, *bap;
308a30f8f8cSSatish Balay
309a30f8f8cSSatish Balay /* for stash */
3100298fd71SBarry Smith PetscInt n_loc, *in_loc = NULL;
3110298fd71SBarry Smith MatScalar *v_loc = NULL;
312a30f8f8cSSatish Balay
313a30f8f8cSSatish Balay PetscFunctionBegin;
314a30f8f8cSSatish Balay if (!baij->donotstash) {
31559ffdab8SBarry Smith if (n > baij->n_loc) {
3169566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->in_loc));
3179566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->v_loc));
3189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &baij->in_loc));
3199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &baij->v_loc));
32026fbe8dcSKarl Rupp
32159ffdab8SBarry Smith baij->n_loc = n;
32259ffdab8SBarry Smith }
32359ffdab8SBarry Smith in_loc = baij->in_loc;
32459ffdab8SBarry Smith v_loc = baij->v_loc;
325a30f8f8cSSatish Balay }
326a30f8f8cSSatish Balay
327a30f8f8cSSatish Balay for (i = 0; i < m; i++) {
328a30f8f8cSSatish Balay if (im[i] < 0) continue;
3295f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
330a30f8f8cSSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { /* this processor entry */
331a30f8f8cSSatish Balay row = im[i] - rstart_orig; /* local row index */
332a30f8f8cSSatish Balay for (j = 0; j < n; j++) {
33301b2bd88SHong Zhang if (im[i] / bs > in[j] / bs) {
334966bd95aSPierre Jolivet PetscCheck(a->ignore_ltriangular, PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
33501b2bd88SHong Zhang continue; /* ignore lower triangular blocks */
33601b2bd88SHong Zhang }
337a30f8f8cSSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { /* diag entry (A) */
338a30f8f8cSSatish Balay col = in[j] - cstart_orig; /* local col index */
3399371c9d4SSatish Balay brow = row / bs;
3409371c9d4SSatish Balay bcol = col / bs;
341a30f8f8cSSatish Balay if (brow > bcol) continue; /* ignore lower triangular blocks of A */
342db4deed7SKarl Rupp if (roworiented) value = v[i * n + j];
343db4deed7SKarl Rupp else value = v[i + j * m];
344d40312a9SBarry Smith MatSetValues_SeqSBAIJ_A_Private(row, col, value, addv, im[i], in[j]);
3459566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv)); */
346f7d195e4SLawrence Mitchell } else if (in[j] < 0) {
347f7d195e4SLawrence Mitchell continue;
348f7d195e4SLawrence Mitchell } else {
349f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
350f7d195e4SLawrence Mitchell /* off-diag entry (B) */
351a30f8f8cSSatish Balay if (mat->was_assembled) {
35248a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
353a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
354eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col));
35571730473SSatish Balay col = col - 1;
356a30f8f8cSSatish Balay #else
35771730473SSatish Balay col = baij->colmap[in[j] / bs] - 1;
358a30f8f8cSSatish Balay #endif
359f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqSBAIJ *)baij->A->data)->nonew) {
3609566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISBAIJ(mat));
361a30f8f8cSSatish Balay col = in[j];
362a30f8f8cSSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
363a30f8f8cSSatish Balay B = baij->B;
36457508eceSPierre Jolivet b = (Mat_SeqBAIJ *)B->data;
3659371c9d4SSatish Balay bimax = b->imax;
3669371c9d4SSatish Balay bi = b->i;
3679371c9d4SSatish Balay bilen = b->ilen;
3689371c9d4SSatish Balay bj = b->j;
369a30f8f8cSSatish Balay ba = b->a;
37071730473SSatish Balay } else col += in[j] % bs;
371a30f8f8cSSatish Balay } else col = in[j];
372db4deed7SKarl Rupp if (roworiented) value = v[i * n + j];
373db4deed7SKarl Rupp else value = v[i + j * m];
374d40312a9SBarry Smith MatSetValues_SeqSBAIJ_B_Private(row, col, value, addv, im[i], in[j]);
3759566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */
376a30f8f8cSSatish Balay }
377a30f8f8cSSatish Balay }
378a30f8f8cSSatish Balay } else { /* off processor entry */
3795f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
380a30f8f8cSSatish Balay if (!baij->donotstash) {
3815080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE;
382a30f8f8cSSatish Balay n_loc = 0;
383a30f8f8cSSatish Balay for (j = 0; j < n; j++) {
384f65c83cfSHong Zhang if (im[i] / bs > in[j] / bs) continue; /* ignore lower triangular blocks */
385a30f8f8cSSatish Balay in_loc[n_loc] = in[j];
386a30f8f8cSSatish Balay if (roworiented) {
387a30f8f8cSSatish Balay v_loc[n_loc] = v[i * n + j];
388a30f8f8cSSatish Balay } else {
389a30f8f8cSSatish Balay v_loc[n_loc] = v[j * m + i];
390a30f8f8cSSatish Balay }
391a30f8f8cSSatish Balay n_loc++;
392a30f8f8cSSatish Balay }
3939566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n_loc, in_loc, v_loc, PETSC_FALSE));
394a30f8f8cSSatish Balay }
395a30f8f8cSSatish Balay }
396a30f8f8cSSatish Balay }
3973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
398a30f8f8cSSatish Balay }
399a30f8f8cSSatish Balay
MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)400d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqSBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol)
401d71ae5a4SJacob Faibussowitsch {
40236bd2089SBarry Smith Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)A->data;
40336bd2089SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N;
40436bd2089SBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen;
40536bd2089SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs;
40636bd2089SBarry Smith PetscBool roworiented = a->roworiented;
40736bd2089SBarry Smith const PetscScalar *value = v;
40836bd2089SBarry Smith MatScalar *ap, *aa = a->a, *bap;
40936bd2089SBarry Smith
41036bd2089SBarry Smith PetscFunctionBegin;
41136bd2089SBarry Smith if (col < row) {
412966bd95aSPierre Jolivet PetscCheck(a->ignore_ltriangular, PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
413966bd95aSPierre Jolivet PetscFunctionReturn(PETSC_SUCCESS); /* ignore lower triangular block */
41436bd2089SBarry Smith }
41536bd2089SBarry Smith rp = aj + ai[row];
41636bd2089SBarry Smith ap = aa + bs2 * ai[row];
41736bd2089SBarry Smith rmax = imax[row];
41836bd2089SBarry Smith nrow = ailen[row];
41936bd2089SBarry Smith value = v;
42036bd2089SBarry Smith low = 0;
42136bd2089SBarry Smith high = nrow;
42236bd2089SBarry Smith
42336bd2089SBarry Smith while (high - low > 7) {
42436bd2089SBarry Smith t = (low + high) / 2;
42536bd2089SBarry Smith if (rp[t] > col) high = t;
42636bd2089SBarry Smith else low = t;
42736bd2089SBarry Smith }
42836bd2089SBarry Smith for (i = low; i < high; i++) {
42936bd2089SBarry Smith if (rp[i] > col) break;
43036bd2089SBarry Smith if (rp[i] == col) {
43136bd2089SBarry Smith bap = ap + bs2 * i;
43236bd2089SBarry Smith if (roworiented) {
43336bd2089SBarry Smith if (is == ADD_VALUES) {
43436bd2089SBarry Smith for (ii = 0; ii < bs; ii++) {
435ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++;
43636bd2089SBarry Smith }
43736bd2089SBarry Smith } else {
43836bd2089SBarry Smith for (ii = 0; ii < bs; ii++) {
439ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
44036bd2089SBarry Smith }
44136bd2089SBarry Smith }
44236bd2089SBarry Smith } else {
44336bd2089SBarry Smith if (is == ADD_VALUES) {
44436bd2089SBarry Smith for (ii = 0; ii < bs; ii++) {
445ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ += *value++;
44636bd2089SBarry Smith }
44736bd2089SBarry Smith } else {
44836bd2089SBarry Smith for (ii = 0; ii < bs; ii++) {
449ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++;
45036bd2089SBarry Smith }
45136bd2089SBarry Smith }
45236bd2089SBarry Smith }
45336bd2089SBarry Smith goto noinsert2;
45436bd2089SBarry Smith }
45536bd2089SBarry Smith }
45636bd2089SBarry Smith if (nonew == 1) goto noinsert2;
4575f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new block index nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
45836bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
4599371c9d4SSatish Balay N = nrow++ - 1;
4609371c9d4SSatish Balay high++;
46136bd2089SBarry Smith /* shift up all the later entries in this row */
4629566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
4639566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
46436bd2089SBarry Smith rp[i] = col;
46536bd2089SBarry Smith bap = ap + bs2 * i;
46636bd2089SBarry Smith if (roworiented) {
46736bd2089SBarry Smith for (ii = 0; ii < bs; ii++) {
468ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
46936bd2089SBarry Smith }
47036bd2089SBarry Smith } else {
47136bd2089SBarry Smith for (ii = 0; ii < bs; ii++) {
472ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++;
47336bd2089SBarry Smith }
47436bd2089SBarry Smith }
47536bd2089SBarry Smith noinsert2:;
47636bd2089SBarry Smith ailen[row] = nrow;
4773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
47836bd2089SBarry Smith }
47936bd2089SBarry Smith
48036bd2089SBarry Smith /*
48136bd2089SBarry Smith This routine is exactly duplicated in mpibaij.c
48236bd2089SBarry Smith */
MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)483d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol)
484d71ae5a4SJacob Faibussowitsch {
48536bd2089SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data;
48636bd2089SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N;
48736bd2089SBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen;
48836bd2089SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs;
48936bd2089SBarry Smith PetscBool roworiented = a->roworiented;
49036bd2089SBarry Smith const PetscScalar *value = v;
49136bd2089SBarry Smith MatScalar *ap, *aa = a->a, *bap;
49236bd2089SBarry Smith
49336bd2089SBarry Smith PetscFunctionBegin;
49436bd2089SBarry Smith rp = aj + ai[row];
49536bd2089SBarry Smith ap = aa + bs2 * ai[row];
49636bd2089SBarry Smith rmax = imax[row];
49736bd2089SBarry Smith nrow = ailen[row];
49836bd2089SBarry Smith low = 0;
49936bd2089SBarry Smith high = nrow;
50036bd2089SBarry Smith value = v;
50136bd2089SBarry Smith while (high - low > 7) {
50236bd2089SBarry Smith t = (low + high) / 2;
50336bd2089SBarry Smith if (rp[t] > col) high = t;
50436bd2089SBarry Smith else low = t;
50536bd2089SBarry Smith }
50636bd2089SBarry Smith for (i = low; i < high; i++) {
50736bd2089SBarry Smith if (rp[i] > col) break;
50836bd2089SBarry Smith if (rp[i] == col) {
50936bd2089SBarry Smith bap = ap + bs2 * i;
51036bd2089SBarry Smith if (roworiented) {
51136bd2089SBarry Smith if (is == ADD_VALUES) {
51236bd2089SBarry Smith for (ii = 0; ii < bs; ii++) {
513ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++;
51436bd2089SBarry Smith }
51536bd2089SBarry Smith } else {
51636bd2089SBarry Smith for (ii = 0; ii < bs; ii++) {
517ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
51836bd2089SBarry Smith }
51936bd2089SBarry Smith }
52036bd2089SBarry Smith } else {
52136bd2089SBarry Smith if (is == ADD_VALUES) {
52236bd2089SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) {
523ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] += value[jj];
52436bd2089SBarry Smith bap += bs;
52536bd2089SBarry Smith }
52636bd2089SBarry Smith } else {
52736bd2089SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) {
528ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] = value[jj];
52936bd2089SBarry Smith bap += bs;
53036bd2089SBarry Smith }
53136bd2089SBarry Smith }
53236bd2089SBarry Smith }
53336bd2089SBarry Smith goto noinsert2;
53436bd2089SBarry Smith }
53536bd2089SBarry Smith }
53636bd2089SBarry Smith if (nonew == 1) goto noinsert2;
5375f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
53836bd2089SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
5399371c9d4SSatish Balay N = nrow++ - 1;
5409371c9d4SSatish Balay high++;
54136bd2089SBarry Smith /* shift up all the later entries in this row */
5429566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
5439566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
54436bd2089SBarry Smith rp[i] = col;
54536bd2089SBarry Smith bap = ap + bs2 * i;
54636bd2089SBarry Smith if (roworiented) {
54736bd2089SBarry Smith for (ii = 0; ii < bs; ii++) {
548ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
54936bd2089SBarry Smith }
55036bd2089SBarry Smith } else {
55136bd2089SBarry Smith for (ii = 0; ii < bs; ii++) {
552ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++;
55336bd2089SBarry Smith }
55436bd2089SBarry Smith }
55536bd2089SBarry Smith noinsert2:;
55636bd2089SBarry Smith ailen[row] = nrow;
5573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
55836bd2089SBarry Smith }
55936bd2089SBarry Smith
56036bd2089SBarry Smith /*
56136bd2089SBarry Smith This routine could be optimized by removing the need for the block copy below and passing stride information
56236bd2089SBarry Smith to the above inline routines; similarly in MatSetValuesBlocked_MPIBAIJ()
56336bd2089SBarry Smith */
MatSetValuesBlocked_MPISBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)56466976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPISBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const MatScalar v[], InsertMode addv)
565d71ae5a4SJacob Faibussowitsch {
5660880e062SHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
567f15d580aSBarry Smith const MatScalar *value;
568f15d580aSBarry Smith MatScalar *barray = baij->barray;
569ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented, ignore_ltriangular = ((Mat_SeqSBAIJ *)baij->A->data)->ignore_ltriangular;
570899cda47SBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs;
571476417e5SBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval;
572476417e5SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2;
5730880e062SHong Zhang
574a30f8f8cSSatish Balay PetscFunctionBegin;
5750880e062SHong Zhang if (!barray) {
5769566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray));
5770880e062SHong Zhang baij->barray = barray;
5780880e062SHong Zhang }
5790880e062SHong Zhang
5800880e062SHong Zhang if (roworiented) {
5810880e062SHong Zhang stepval = (n - 1) * bs;
5820880e062SHong Zhang } else {
5830880e062SHong Zhang stepval = (m - 1) * bs;
5840880e062SHong Zhang }
5850880e062SHong Zhang for (i = 0; i < m; i++) {
5860880e062SHong Zhang if (im[i] < 0) continue;
5876bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
5880880e062SHong Zhang if (im[i] >= rstart && im[i] < rend) {
5890880e062SHong Zhang row = im[i] - rstart;
5900880e062SHong Zhang for (j = 0; j < n; j++) {
591f3f98c53SJed Brown if (im[i] > in[j]) {
592966bd95aSPierre Jolivet PetscCheck(ignore_ltriangular, PETSC_COMM_SELF, PETSC_ERR_USER, "Lower triangular value cannot be set for sbaij format. Ignoring these values, run with -mat_ignore_lower_triangular or call MatSetOption(mat,MAT_IGNORE_LOWER_TRIANGULAR,PETSC_TRUE)");
593966bd95aSPierre Jolivet continue; /* ignore lower triangular blocks */
594f3f98c53SJed Brown }
5950880e062SHong Zhang /* If NumCol = 1 then a copy is not required */
596966bd95aSPierre Jolivet if (roworiented && n == 1) {
597f15d580aSBarry Smith barray = (MatScalar *)v + i * bs2;
5980880e062SHong Zhang } else if ((!roworiented) && (m == 1)) {
599f15d580aSBarry Smith barray = (MatScalar *)v + j * bs2;
6000880e062SHong Zhang } else { /* Here a copy is required */
6010880e062SHong Zhang if (roworiented) {
6020880e062SHong Zhang value = v + i * (stepval + bs) * bs + j * bs;
6030880e062SHong Zhang } else {
6040880e062SHong Zhang value = v + j * (stepval + bs) * bs + i * bs;
6050880e062SHong Zhang }
6060880e062SHong Zhang for (ii = 0; ii < bs; ii++, value += stepval) {
607ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *barray++ = *value++;
6080880e062SHong Zhang }
6090880e062SHong Zhang barray -= bs2;
6100880e062SHong Zhang }
6110880e062SHong Zhang
6120880e062SHong Zhang if (in[j] >= cstart && in[j] < cend) {
6130880e062SHong Zhang col = in[j] - cstart;
6149566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqSBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j]));
615f7d195e4SLawrence Mitchell } else if (in[j] < 0) {
616f7d195e4SLawrence Mitchell continue;
617f7d195e4SLawrence Mitchell } else {
618f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1);
6190880e062SHong Zhang if (mat->was_assembled) {
62048a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
6210880e062SHong Zhang
6220880e062SHong Zhang #if defined(PETSC_USE_CTABLE)
623eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col));
624b758ae8cSBarry Smith col = col < 1 ? -1 : (col - 1) / bs;
6250880e062SHong Zhang #else
626b758ae8cSBarry Smith col = baij->colmap[in[j]] < 1 ? -1 : (baij->colmap[in[j]] - 1) / bs;
6270880e062SHong Zhang #endif
628f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqBAIJ *)baij->A->data)->nonew) {
6299566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPISBAIJ(mat));
6300880e062SHong Zhang col = in[j];
6310880e062SHong Zhang }
63226fbe8dcSKarl Rupp } else col = in[j];
6339566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j]));
6340880e062SHong Zhang }
6350880e062SHong Zhang }
6360880e062SHong Zhang } else {
6375f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
6380880e062SHong Zhang if (!baij->donotstash) {
6390880e062SHong Zhang if (roworiented) {
6409566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6410880e062SHong Zhang } else {
6429566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6430880e062SHong Zhang }
6440880e062SHong Zhang }
6450880e062SHong Zhang }
6460880e062SHong Zhang }
6473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
648a30f8f8cSSatish Balay }
649a30f8f8cSSatish Balay
MatGetValues_MPISBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])65066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPISBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
651d71ae5a4SJacob Faibussowitsch {
652f3566a2aSHong Zhang Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
653d0f46423SBarry Smith PetscInt bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend;
654d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data;
655a30f8f8cSSatish Balay
656a30f8f8cSSatish Balay PetscFunctionBegin;
657a30f8f8cSSatish Balay for (i = 0; i < m; i++) {
65854c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */
65954c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
660966bd95aSPierre Jolivet PetscCheck(idxm[i] >= bsrstart && idxm[i] < bsrend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported");
661a30f8f8cSSatish Balay row = idxm[i] - bsrstart;
662a30f8f8cSSatish Balay for (j = 0; j < n; j++) {
66354c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */
66454c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
665a30f8f8cSSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) {
666a30f8f8cSSatish Balay col = idxn[j] - bscstart;
6679566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqSBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j));
668a30f8f8cSSatish Balay } else {
66948a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
670a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
671eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data));
672a30f8f8cSSatish Balay data--;
673a30f8f8cSSatish Balay #else
674a30f8f8cSSatish Balay data = baij->colmap[idxn[j] / bs] - 1;
675a30f8f8cSSatish Balay #endif
676966bd95aSPierre Jolivet if (data < 0 || baij->garray[data / bs] != idxn[j] / bs) *(v + i * n + j) = 0.0;
677a30f8f8cSSatish Balay else {
678a30f8f8cSSatish Balay col = data + idxn[j] % bs;
6799566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j));
680a30f8f8cSSatish Balay }
681a30f8f8cSSatish Balay }
682a30f8f8cSSatish Balay }
683a30f8f8cSSatish Balay }
6843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
685a30f8f8cSSatish Balay }
686a30f8f8cSSatish Balay
MatNorm_MPISBAIJ(Mat mat,NormType type,PetscReal * norm)68766976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPISBAIJ(Mat mat, NormType type, PetscReal *norm)
688d71ae5a4SJacob Faibussowitsch {
689a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
690a30f8f8cSSatish Balay PetscReal sum[2], *lnorm2;
691a30f8f8cSSatish Balay
692a30f8f8cSSatish Balay PetscFunctionBegin;
693a30f8f8cSSatish Balay if (baij->size == 1) {
6949566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, norm));
695a30f8f8cSSatish Balay } else {
696a30f8f8cSSatish Balay if (type == NORM_FROBENIUS) {
6979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2, &lnorm2));
6989566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, lnorm2));
6999371c9d4SSatish Balay *lnorm2 = (*lnorm2) * (*lnorm2);
70075dbe01dSPierre Jolivet lnorm2++; /* square power of norm(A) */
7019566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->B, type, lnorm2));
7029371c9d4SSatish Balay *lnorm2 = (*lnorm2) * (*lnorm2);
70375dbe01dSPierre Jolivet lnorm2--; /* square power of norm(B) */
704462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(lnorm2, sum, 2, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7058f1a2a5eSBarry Smith *norm = PetscSqrtReal(sum[0] + 2 * sum[1]);
7069566063dSJacob Faibussowitsch PetscCall(PetscFree(lnorm2));
7070b8dc8d2SHong Zhang } else if (type == NORM_INFINITY || type == NORM_1) { /* max row/column sum */
7080b8dc8d2SHong Zhang Mat_SeqSBAIJ *amat = (Mat_SeqSBAIJ *)baij->A->data;
7090b8dc8d2SHong Zhang Mat_SeqBAIJ *bmat = (Mat_SeqBAIJ *)baij->B->data;
710e91c04dfSPierre Jolivet PetscReal *rsum, vabs;
711899cda47SBarry Smith PetscInt *jj, *garray = baij->garray, rstart = baij->rstartbs, nz;
712d0f46423SBarry Smith PetscInt brow, bcol, col, bs = baij->A->rmap->bs, row, grow, gcol, mbs = amat->mbs;
7130b8dc8d2SHong Zhang MatScalar *v;
7140b8dc8d2SHong Zhang
71575dbe01dSPierre Jolivet PetscCall(PetscCalloc1(mat->cmap->N, &rsum));
7160b8dc8d2SHong Zhang /* Amat */
7179371c9d4SSatish Balay v = amat->a;
7189371c9d4SSatish Balay jj = amat->j;
7190b8dc8d2SHong Zhang for (brow = 0; brow < mbs; brow++) {
7200b8dc8d2SHong Zhang grow = bs * (rstart + brow);
7210b8dc8d2SHong Zhang nz = amat->i[brow + 1] - amat->i[brow];
7220b8dc8d2SHong Zhang for (bcol = 0; bcol < nz; bcol++) {
7239371c9d4SSatish Balay gcol = bs * (rstart + *jj);
7249371c9d4SSatish Balay jj++;
7250b8dc8d2SHong Zhang for (col = 0; col < bs; col++) {
7260b8dc8d2SHong Zhang for (row = 0; row < bs; row++) {
7279371c9d4SSatish Balay vabs = PetscAbsScalar(*v);
7289371c9d4SSatish Balay v++;
7290b8dc8d2SHong Zhang rsum[gcol + col] += vabs;
7300b8dc8d2SHong Zhang /* non-diagonal block */
7310b8dc8d2SHong Zhang if (bcol > 0 && vabs > 0.0) rsum[grow + row] += vabs;
7320b8dc8d2SHong Zhang }
7330b8dc8d2SHong Zhang }
7340b8dc8d2SHong Zhang }
7359566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nz * bs * bs));
7360b8dc8d2SHong Zhang }
7370b8dc8d2SHong Zhang /* Bmat */
7389371c9d4SSatish Balay v = bmat->a;
7399371c9d4SSatish Balay jj = bmat->j;
7400b8dc8d2SHong Zhang for (brow = 0; brow < mbs; brow++) {
7410b8dc8d2SHong Zhang grow = bs * (rstart + brow);
7420b8dc8d2SHong Zhang nz = bmat->i[brow + 1] - bmat->i[brow];
7430b8dc8d2SHong Zhang for (bcol = 0; bcol < nz; bcol++) {
7449371c9d4SSatish Balay gcol = bs * garray[*jj];
7459371c9d4SSatish Balay jj++;
7460b8dc8d2SHong Zhang for (col = 0; col < bs; col++) {
7470b8dc8d2SHong Zhang for (row = 0; row < bs; row++) {
7489371c9d4SSatish Balay vabs = PetscAbsScalar(*v);
7499371c9d4SSatish Balay v++;
7500b8dc8d2SHong Zhang rsum[gcol + col] += vabs;
7510b8dc8d2SHong Zhang rsum[grow + row] += vabs;
7520b8dc8d2SHong Zhang }
7530b8dc8d2SHong Zhang }
7540b8dc8d2SHong Zhang }
7559566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(nz * bs * bs));
7560b8dc8d2SHong Zhang }
757e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, rsum, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7580b8dc8d2SHong Zhang *norm = 0.0;
759d0f46423SBarry Smith for (col = 0; col < mat->cmap->N; col++) {
760e91c04dfSPierre Jolivet if (rsum[col] > *norm) *norm = rsum[col];
7610b8dc8d2SHong Zhang }
762e91c04dfSPierre Jolivet PetscCall(PetscFree(rsum));
763f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for this norm yet");
764a30f8f8cSSatish Balay }
7653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
766a30f8f8cSSatish Balay }
767a30f8f8cSSatish Balay
MatAssemblyBegin_MPISBAIJ(Mat mat,MatAssemblyType mode)76866976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPISBAIJ(Mat mat, MatAssemblyType mode)
769d71ae5a4SJacob Faibussowitsch {
770a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
7711302d50aSBarry Smith PetscInt nstash, reallocs;
772a30f8f8cSSatish Balay
773a30f8f8cSSatish Balay PetscFunctionBegin;
7743ba16761SJacob Faibussowitsch if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
775a30f8f8cSSatish Balay
7769566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
7779566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs));
7789566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
7799566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
7809566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
7819566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
7823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
783a30f8f8cSSatish Balay }
784a30f8f8cSSatish Balay
MatAssemblyEnd_MPISBAIJ(Mat mat,MatAssemblyType mode)78566976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPISBAIJ(Mat mat, MatAssemblyType mode)
786d71ae5a4SJacob Faibussowitsch {
787a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
788a30f8f8cSSatish Balay Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)baij->A->data;
78913f74950SBarry Smith PetscInt i, j, rstart, ncols, flg, bs2 = baij->bs2;
790e44c0bd4SBarry Smith PetscInt *row, *col;
791c0edf612SJunchao Zhang PetscBool all_assembled;
79213f74950SBarry Smith PetscMPIInt n;
793ace3abfcSBarry Smith PetscBool r1, r2, r3;
794a30f8f8cSSatish Balay MatScalar *val;
795a30f8f8cSSatish Balay
79691c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
797a30f8f8cSSatish Balay PetscFunctionBegin;
7984cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) {
799a30f8f8cSSatish Balay while (1) {
8009566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
801a30f8f8cSSatish Balay if (!flg) break;
802a30f8f8cSSatish Balay
803a30f8f8cSSatish Balay for (i = 0; i < n;) {
804a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */
80526fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) {
80626fbe8dcSKarl Rupp if (row[j] != rstart) break;
80726fbe8dcSKarl Rupp }
808a30f8f8cSSatish Balay if (j < n) ncols = j - i;
809a30f8f8cSSatish Balay else ncols = n - i;
810a30f8f8cSSatish Balay /* Now assemble all these values with a single function call */
8119566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
812a30f8f8cSSatish Balay i = j;
813a30f8f8cSSatish Balay }
814a30f8f8cSSatish Balay }
8159566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash));
816a30f8f8cSSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented,
8175e116b59SBarry Smith set the row-oriented flag to column-oriented, and after MatSetValues()
818a30f8f8cSSatish Balay restore the original flags */
819a30f8f8cSSatish Balay r1 = baij->roworiented;
820a30f8f8cSSatish Balay r2 = a->roworiented;
82191c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented;
82226fbe8dcSKarl Rupp
823a30f8f8cSSatish Balay baij->roworiented = PETSC_FALSE;
824a30f8f8cSSatish Balay a->roworiented = PETSC_FALSE;
82526fbe8dcSKarl Rupp
826b638e6b4SJunchao Zhang ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE; /* b->roworiented */
827a30f8f8cSSatish Balay while (1) {
8289566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg));
829a30f8f8cSSatish Balay if (!flg) break;
830a30f8f8cSSatish Balay
831a30f8f8cSSatish Balay for (i = 0; i < n;) {
832a30f8f8cSSatish Balay /* Now identify the consecutive vals belonging to the same row */
83326fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) {
83426fbe8dcSKarl Rupp if (row[j] != rstart) break;
83526fbe8dcSKarl Rupp }
836a30f8f8cSSatish Balay if (j < n) ncols = j - i;
837a30f8f8cSSatish Balay else ncols = n - i;
8389566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode));
839a30f8f8cSSatish Balay i = j;
840a30f8f8cSSatish Balay }
841a30f8f8cSSatish Balay }
8429566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->bstash));
84326fbe8dcSKarl Rupp
844a30f8f8cSSatish Balay baij->roworiented = r1;
845a30f8f8cSSatish Balay a->roworiented = r2;
84626fbe8dcSKarl Rupp
847b638e6b4SJunchao Zhang ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; /* b->roworiented */
848a30f8f8cSSatish Balay }
849a30f8f8cSSatish Balay
8509566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->A, mode));
8519566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->A, mode));
852a30f8f8cSSatish Balay
853b638e6b4SJunchao Zhang /* determine if any process has disassembled, if so we must
8546aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. */
855a30f8f8cSSatish Balay /*
856a30f8f8cSSatish Balay if nonzero structure of submatrix B cannot change then we know that
857b638e6b4SJunchao Zhang no process disassembled thus we can skip this stuff
858a30f8f8cSSatish Balay */
859a30f8f8cSSatish Balay if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) {
8605440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &all_assembled, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
861c0edf612SJunchao Zhang if (mat->was_assembled && !all_assembled) PetscCall(MatDisAssemble_MPISBAIJ(mat));
862a30f8f8cSSatish Balay }
863a30f8f8cSSatish Balay
864ac530a7eSPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPISBAIJ(mat)); /* setup Mvctx and sMvctx */
8659566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->B, mode));
8669566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->B, mode));
867a30f8f8cSSatish Balay
8689566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
86926fbe8dcSKarl Rupp
870f4259b30SLisandro Dalcin baij->rowvalues = NULL;
8714f9cfa9eSBarry Smith
8724f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
873f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)baij->A->data)->nonew) {
874e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
875462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
876e56f5c9eSBarry Smith }
8773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
878a30f8f8cSSatish Balay }
879a30f8f8cSSatish Balay
880dd6ea824SBarry Smith extern PetscErrorCode MatSetValues_MPIBAIJ(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode);
8819804daf3SBarry Smith #include <petscdraw.h>
MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)882d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
883d71ae5a4SJacob Faibussowitsch {
884a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
885d0f46423SBarry Smith PetscInt bs = mat->rmap->bs;
8867da1fb6eSBarry Smith PetscMPIInt rank = baij->rank;
8879f196a02SMartin Diehl PetscBool isascii, isdraw;
888b0a32e0cSBarry Smith PetscViewer sviewer;
889f3ef73ceSBarry Smith PetscViewerFormat format;
890a30f8f8cSSatish Balay
891a30f8f8cSSatish Balay PetscFunctionBegin;
8929f196a02SMartin Diehl PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii));
8939566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
8949f196a02SMartin Diehl if (isascii) {
8959566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format));
896456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
897a30f8f8cSSatish Balay MatInfo info;
8989566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
8999566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
9009566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer));
9019371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
902835f2295SStefano Zampini mat->rmap->bs, info.memory));
9039566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info));
9049566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
9059566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info));
9069566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
9079566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer));
9089566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer));
9099566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
9109566063dSJacob Faibussowitsch PetscCall(VecScatterView(baij->Mvctx, viewer));
9113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
912e363090eSPierre Jolivet } else if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_FACTOR_INFO) PetscFunctionReturn(PETSC_SUCCESS);
913a30f8f8cSSatish Balay }
914a30f8f8cSSatish Balay
915a30f8f8cSSatish Balay if (isdraw) {
916b0a32e0cSBarry Smith PetscDraw draw;
917ace3abfcSBarry Smith PetscBool isnull;
9189566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
9199566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull));
9203ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
921a30f8f8cSSatish Balay }
922a30f8f8cSSatish Balay
9237da1fb6eSBarry Smith {
924a30f8f8cSSatish Balay /* assemble the entire matrix onto first processor. */
925a30f8f8cSSatish Balay Mat A;
92665d70643SHong Zhang Mat_SeqSBAIJ *Aloc;
92765d70643SHong Zhang Mat_SeqBAIJ *Bloc;
928d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs;
929a30f8f8cSSatish Balay MatScalar *a;
9303e219373SBarry Smith const char *matname;
931a30f8f8cSSatish Balay
932f204ca49SKris Buschelman /* Should this be the same type as mat? */
9339566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A));
934dd400576SPatrick Sanan if (rank == 0) {
9359566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N));
936a30f8f8cSSatish Balay } else {
9379566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N));
938a30f8f8cSSatish Balay }
9399566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPISBAIJ));
9409566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL));
9419566063dSJacob Faibussowitsch PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE));
942a30f8f8cSSatish Balay
943a30f8f8cSSatish Balay /* copy over the A part */
94465d70643SHong Zhang Aloc = (Mat_SeqSBAIJ *)baij->A->data;
9459371c9d4SSatish Balay ai = Aloc->i;
9469371c9d4SSatish Balay aj = Aloc->j;
9479371c9d4SSatish Balay a = Aloc->a;
9489566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals));
949a30f8f8cSSatish Balay
950a30f8f8cSSatish Balay for (i = 0; i < mbs; i++) {
951e9f7bc9eSHong Zhang rvals[0] = bs * (baij->rstartbs + i);
95226fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
953a30f8f8cSSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) {
954e9f7bc9eSHong Zhang col = (baij->cstartbs + aj[j]) * bs;
955a30f8f8cSSatish Balay for (k = 0; k < bs; k++) {
9569566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPISBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
95726fbe8dcSKarl Rupp col++;
95826fbe8dcSKarl Rupp a += bs;
959a30f8f8cSSatish Balay }
960a30f8f8cSSatish Balay }
961a30f8f8cSSatish Balay }
962a30f8f8cSSatish Balay /* copy over the B part */
96365d70643SHong Zhang Bloc = (Mat_SeqBAIJ *)baij->B->data;
9649371c9d4SSatish Balay ai = Bloc->i;
9659371c9d4SSatish Balay aj = Bloc->j;
9669371c9d4SSatish Balay a = Bloc->a;
967a30f8f8cSSatish Balay for (i = 0; i < mbs; i++) {
968e9f7bc9eSHong Zhang rvals[0] = bs * (baij->rstartbs + i);
96926fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
970a30f8f8cSSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) {
971a30f8f8cSSatish Balay col = baij->garray[aj[j]] * bs;
972a30f8f8cSSatish Balay for (k = 0; k < bs; k++) {
9739566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
97426fbe8dcSKarl Rupp col++;
97526fbe8dcSKarl Rupp a += bs;
976a30f8f8cSSatish Balay }
977a30f8f8cSSatish Balay }
978a30f8f8cSSatish Balay }
9799566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals));
9809566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
9819566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
982a30f8f8cSSatish Balay /*
983a30f8f8cSSatish Balay Everyone has to call to draw the matrix since the graphics waits are
984b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object
985a30f8f8cSSatish Balay */
9869566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
98723a3927dSBarry Smith if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname));
988dd400576SPatrick Sanan if (rank == 0) {
989f4f49eeaSPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPISBAIJ *)A->data)->A, matname));
990f4f49eeaSPierre Jolivet PetscCall(MatView_SeqSBAIJ(((Mat_MPISBAIJ *)A->data)->A, sviewer));
991a30f8f8cSSatish Balay }
9929566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
9939566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A));
994a30f8f8cSSatish Balay }
9953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
996a30f8f8cSSatish Balay }
997a30f8f8cSSatish Balay
998618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
999618cc2edSLisandro Dalcin #define MatView_MPISBAIJ_Binary MatView_MPIBAIJ_Binary
1000d1654148SHong Zhang
MatView_MPISBAIJ(Mat mat,PetscViewer viewer)100166976f2fSJacob Faibussowitsch static PetscErrorCode MatView_MPISBAIJ(Mat mat, PetscViewer viewer)
1002d71ae5a4SJacob Faibussowitsch {
10039f196a02SMartin Diehl PetscBool isascii, isdraw, issocket, isbinary;
1004a30f8f8cSSatish Balay
1005a30f8f8cSSatish Balay PetscFunctionBegin;
10069f196a02SMartin Diehl PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii));
10079566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
10089566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
10099566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
1010ac530a7eSPierre Jolivet if (isascii || isdraw || issocket) PetscCall(MatView_MPISBAIJ_ASCIIorDraworSocket(mat, viewer));
1011ac530a7eSPierre Jolivet else if (isbinary) PetscCall(MatView_MPISBAIJ_Binary(mat, viewer));
10123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1013a30f8f8cSSatish Balay }
1014a30f8f8cSSatish Balay
1015789afff4SPierre Jolivet #if defined(PETSC_USE_COMPLEX)
MatMult_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy)1016789afff4SPierre Jolivet static PetscErrorCode MatMult_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy)
1017d71ae5a4SJacob Faibussowitsch {
1018547795f9SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1019eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs;
10206de40e93SBarry Smith PetscScalar *from;
10216de40e93SBarry Smith const PetscScalar *x;
1022547795f9SHong Zhang
1023547795f9SHong Zhang PetscFunctionBegin;
1024547795f9SHong Zhang /* diagonal part */
10259566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a));
1026629a200eSBarry Smith /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */
1027629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b));
1028629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b));
1029547795f9SHong Zhang
1030547795f9SHong Zhang /* subdiagonal part */
10315f80ce2aSJacob Faibussowitsch PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name);
10329566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b));
1033547795f9SHong Zhang
1034547795f9SHong Zhang /* copy x into the vec slvec0 */
10359566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from));
10369566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x));
1037547795f9SHong Zhang
10389566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs));
10399566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from));
10409566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x));
1041547795f9SHong Zhang
10429566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
10439566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1044547795f9SHong Zhang /* supperdiagonal part */
10459566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy));
10463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1047547795f9SHong Zhang }
1048789afff4SPierre Jolivet #endif
1049547795f9SHong Zhang
MatMult_MPISBAIJ(Mat A,Vec xx,Vec yy)105066976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPISBAIJ(Mat A, Vec xx, Vec yy)
1051d71ae5a4SJacob Faibussowitsch {
1052a9d4b620SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1053eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs;
1054d9ca1df4SBarry Smith PetscScalar *from;
1055d9ca1df4SBarry Smith const PetscScalar *x;
1056a9d4b620SHong Zhang
1057a9d4b620SHong Zhang PetscFunctionBegin;
1058a9d4b620SHong Zhang /* diagonal part */
10599566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, a->slvec1a));
1060629a200eSBarry Smith /* since a->slvec1b shares memory (dangerously) with a->slec1 changes to a->slec1 will affect it */
1061629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b));
1062629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b));
1063a9d4b620SHong Zhang
1064a9d4b620SHong Zhang /* subdiagonal part */
10659566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b));
1066fc165ae2SBarry Smith
1067a9d4b620SHong Zhang /* copy x into the vec slvec0 */
10689566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from));
10699566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x));
1070a9d4b620SHong Zhang
10719566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs));
10729566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from));
10739566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x));
1074fc165ae2SBarry Smith
10759566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
10769566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1077a9d4b620SHong Zhang /* supperdiagonal part */
10789566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, yy));
10793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1080a9d4b620SHong Zhang }
1081a9d4b620SHong Zhang
108266976f2fSJacob Faibussowitsch #if PetscDefined(USE_COMPLEX)
MatMultAdd_MPISBAIJ_Hermitian(Mat A,Vec xx,Vec yy,Vec zz)108366976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISBAIJ_Hermitian(Mat A, Vec xx, Vec yy, Vec zz)
1084d71ae5a4SJacob Faibussowitsch {
1085eb1ec7c1SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1086eb1ec7c1SStefano Zampini PetscInt mbs = a->mbs, bs = A->rmap->bs;
1087629a200eSBarry Smith PetscScalar *from;
1088eb1ec7c1SStefano Zampini const PetscScalar *x;
1089eb1ec7c1SStefano Zampini
1090eb1ec7c1SStefano Zampini PetscFunctionBegin;
1091eb1ec7c1SStefano Zampini /* diagonal part */
10929566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a));
1093629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b));
1094629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b));
1095eb1ec7c1SStefano Zampini
1096eb1ec7c1SStefano Zampini /* subdiagonal part */
10975f80ce2aSJacob Faibussowitsch PetscCheck(a->B->ops->multhermitiantranspose, PetscObjectComm((PetscObject)a->B), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)a->B)->type_name);
10989566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multhermitiantranspose)(a->B, xx, a->slvec0b));
1099eb1ec7c1SStefano Zampini
1100eb1ec7c1SStefano Zampini /* copy x into the vec slvec0 */
11019566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from));
11029566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x));
11039566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs));
11049566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from));
1105eb1ec7c1SStefano Zampini
11069566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
11079566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x));
11089566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1109eb1ec7c1SStefano Zampini
1110eb1ec7c1SStefano Zampini /* supperdiagonal part */
11119566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz));
11123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1113eb1ec7c1SStefano Zampini }
111466976f2fSJacob Faibussowitsch #endif
1115eb1ec7c1SStefano Zampini
MatMultAdd_MPISBAIJ(Mat A,Vec xx,Vec yy,Vec zz)111666976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPISBAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1117d71ae5a4SJacob Faibussowitsch {
1118de8b6608SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1119d0f46423SBarry Smith PetscInt mbs = a->mbs, bs = A->rmap->bs;
1120629a200eSBarry Smith PetscScalar *from;
1121d9ca1df4SBarry Smith const PetscScalar *x;
1122a9d4b620SHong Zhang
1123a9d4b620SHong Zhang PetscFunctionBegin;
1124a9d4b620SHong Zhang /* diagonal part */
11259566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, a->slvec1a));
1126629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)a->slvec1b));
1127629a200eSBarry Smith PetscCall(VecZeroEntries(a->slvec1b));
1128a9d4b620SHong Zhang
1129a9d4b620SHong Zhang /* subdiagonal part */
11309566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->slvec0b));
1131a9d4b620SHong Zhang
1132a9d4b620SHong Zhang /* copy x into the vec slvec0 */
11339566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &from));
11349566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x));
11359566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs));
11369566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &from));
1137a9d4b620SHong Zhang
11389566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
11399566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x));
11409566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->sMvctx, a->slvec0, a->slvec1, ADD_VALUES, SCATTER_FORWARD));
1141a9d4b620SHong Zhang
1142a9d4b620SHong Zhang /* supperdiagonal part */
11439566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->slvec1b, a->slvec1a, zz));
11443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1145a9d4b620SHong Zhang }
1146a9d4b620SHong Zhang
1147a30f8f8cSSatish Balay /*
1148a30f8f8cSSatish Balay This only works correctly for square matrices where the subblock A->A is the
1149a30f8f8cSSatish Balay diagonal block
1150a30f8f8cSSatish Balay */
MatGetDiagonal_MPISBAIJ(Mat A,Vec v)115166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPISBAIJ(Mat A, Vec v)
1152d71ae5a4SJacob Faibussowitsch {
1153a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1154a30f8f8cSSatish Balay
1155a30f8f8cSSatish Balay PetscFunctionBegin;
115608401ef6SPierre Jolivet /* PetscCheck(a->rmap->N == a->cmap->N,PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); */
11579566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v));
11583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1159a30f8f8cSSatish Balay }
1160a30f8f8cSSatish Balay
MatScale_MPISBAIJ(Mat A,PetscScalar aa)116166976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPISBAIJ(Mat A, PetscScalar aa)
1162d71ae5a4SJacob Faibussowitsch {
1163a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1164a30f8f8cSSatish Balay
1165a30f8f8cSSatish Balay PetscFunctionBegin;
11669566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa));
11679566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa));
11683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1169a30f8f8cSSatish Balay }
1170a30f8f8cSSatish Balay
MatGetRow_MPISBAIJ(Mat matin,PetscInt row,PetscInt * nz,PetscInt ** idx,PetscScalar ** v)117166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRow_MPISBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1172d71ae5a4SJacob Faibussowitsch {
1173d0d4cfc2SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data;
1174d0d4cfc2SHong Zhang PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p;
1175d0f46423SBarry Smith PetscInt bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB;
1176d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend;
1177899cda47SBarry Smith PetscInt *cmap, *idx_p, cstart = mat->rstartbs;
1178d0d4cfc2SHong Zhang
1179a30f8f8cSSatish Balay PetscFunctionBegin;
11805f80ce2aSJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
1181d0d4cfc2SHong Zhang mat->getrowactive = PETSC_TRUE;
1182d0d4cfc2SHong Zhang
1183d0d4cfc2SHong Zhang if (!mat->rowvalues && (idx || v)) {
1184d0d4cfc2SHong Zhang /*
1185d0d4cfc2SHong Zhang allocate enough space to hold information from the longest row.
1186d0d4cfc2SHong Zhang */
1187d0d4cfc2SHong Zhang Mat_SeqSBAIJ *Aa = (Mat_SeqSBAIJ *)mat->A->data;
1188d0d4cfc2SHong Zhang Mat_SeqBAIJ *Ba = (Mat_SeqBAIJ *)mat->B->data;
1189d0d4cfc2SHong Zhang PetscInt max = 1, mbs = mat->mbs, tmp;
1190d0d4cfc2SHong Zhang for (i = 0; i < mbs; i++) {
1191d0d4cfc2SHong Zhang tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; /* row length */
119226fbe8dcSKarl Rupp if (max < tmp) max = tmp;
1193d0d4cfc2SHong Zhang }
11949566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices));
1195d0d4cfc2SHong Zhang }
1196d0d4cfc2SHong Zhang
11975f80ce2aSJacob Faibussowitsch PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows");
1198d0d4cfc2SHong Zhang lrow = row - brstart; /* local row index */
1199d0d4cfc2SHong Zhang
12009371c9d4SSatish Balay pvA = &vworkA;
12019371c9d4SSatish Balay pcA = &cworkA;
12029371c9d4SSatish Balay pvB = &vworkB;
12039371c9d4SSatish Balay pcB = &cworkB;
12049371c9d4SSatish Balay if (!v) {
12059371c9d4SSatish Balay pvA = NULL;
12069371c9d4SSatish Balay pvB = NULL;
12079371c9d4SSatish Balay }
12089371c9d4SSatish Balay if (!idx) {
12099371c9d4SSatish Balay pcA = NULL;
12109371c9d4SSatish Balay if (!v) pcB = NULL;
12119371c9d4SSatish Balay }
12129566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
12139566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1214d0d4cfc2SHong Zhang nztot = nzA + nzB;
1215d0d4cfc2SHong Zhang
1216d0d4cfc2SHong Zhang cmap = mat->garray;
1217d0d4cfc2SHong Zhang if (v || idx) {
1218d0d4cfc2SHong Zhang if (nztot) {
1219d0d4cfc2SHong Zhang /* Sort by increasing column numbers, assuming A and B already sorted */
1220d0d4cfc2SHong Zhang PetscInt imark = -1;
1221d0d4cfc2SHong Zhang if (v) {
1222d0d4cfc2SHong Zhang *v = v_p = mat->rowvalues;
1223d0d4cfc2SHong Zhang for (i = 0; i < nzB; i++) {
1224d0d4cfc2SHong Zhang if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i];
1225d0d4cfc2SHong Zhang else break;
1226d0d4cfc2SHong Zhang }
1227d0d4cfc2SHong Zhang imark = i;
1228d0d4cfc2SHong Zhang for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
1229d0d4cfc2SHong Zhang for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1230d0d4cfc2SHong Zhang }
1231d0d4cfc2SHong Zhang if (idx) {
1232d0d4cfc2SHong Zhang *idx = idx_p = mat->rowindices;
1233d0d4cfc2SHong Zhang if (imark > -1) {
1234ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1235d0d4cfc2SHong Zhang } else {
1236d0d4cfc2SHong Zhang for (i = 0; i < nzB; i++) {
123726fbe8dcSKarl Rupp if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1238d0d4cfc2SHong Zhang else break;
1239d0d4cfc2SHong Zhang }
1240d0d4cfc2SHong Zhang imark = i;
1241d0d4cfc2SHong Zhang }
1242d0d4cfc2SHong Zhang for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i];
1243d0d4cfc2SHong Zhang for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1244d0d4cfc2SHong Zhang }
1245d0d4cfc2SHong Zhang } else {
1246f4259b30SLisandro Dalcin if (idx) *idx = NULL;
1247f4259b30SLisandro Dalcin if (v) *v = NULL;
1248d0d4cfc2SHong Zhang }
1249d0d4cfc2SHong Zhang }
1250d0d4cfc2SHong Zhang *nz = nztot;
12519566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
12529566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
12533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1254a30f8f8cSSatish Balay }
1255a30f8f8cSSatish Balay
MatRestoreRow_MPISBAIJ(Mat mat,PetscInt row,PetscInt * nz,PetscInt ** idx,PetscScalar ** v)125666976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRow_MPISBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1257d71ae5a4SJacob Faibussowitsch {
1258a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
1259a30f8f8cSSatish Balay
1260a30f8f8cSSatish Balay PetscFunctionBegin;
12615f80ce2aSJacob Faibussowitsch PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first");
1262a30f8f8cSSatish Balay baij->getrowactive = PETSC_FALSE;
12633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1264a30f8f8cSSatish Balay }
1265a30f8f8cSSatish Balay
MatGetRowUpperTriangular_MPISBAIJ(Mat A)126666976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowUpperTriangular_MPISBAIJ(Mat A)
1267d71ae5a4SJacob Faibussowitsch {
1268d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1269d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data;
1270d0d4cfc2SHong Zhang
1271d0d4cfc2SHong Zhang PetscFunctionBegin;
1272d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_TRUE;
12733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1274d0d4cfc2SHong Zhang }
MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)127566976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRowUpperTriangular_MPISBAIJ(Mat A)
1276d71ae5a4SJacob Faibussowitsch {
1277d0d4cfc2SHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1278d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data;
1279d0d4cfc2SHong Zhang
1280d0d4cfc2SHong Zhang PetscFunctionBegin;
1281d0d4cfc2SHong Zhang aA->getrow_utriangular = PETSC_FALSE;
12823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1283d0d4cfc2SHong Zhang }
1284d0d4cfc2SHong Zhang
MatConjugate_MPISBAIJ(Mat mat)128566976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPISBAIJ(Mat mat)
1286d71ae5a4SJacob Faibussowitsch {
12872726fb6dSPierre Jolivet Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)mat->data;
12882726fb6dSPierre Jolivet
128965d0d443SPierre Jolivet PetscFunctionBegin;
12909566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->A));
12919566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->B));
12923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
12932726fb6dSPierre Jolivet }
12942726fb6dSPierre Jolivet
MatRealPart_MPISBAIJ(Mat A)129566976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPISBAIJ(Mat A)
1296d71ae5a4SJacob Faibussowitsch {
129799cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
129899cafbc1SBarry Smith
129999cafbc1SBarry Smith PetscFunctionBegin;
13009566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A));
13019566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B));
13023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
130399cafbc1SBarry Smith }
130499cafbc1SBarry Smith
MatImaginaryPart_MPISBAIJ(Mat A)130566976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPISBAIJ(Mat A)
1306d71ae5a4SJacob Faibussowitsch {
130799cafbc1SBarry Smith Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
130899cafbc1SBarry Smith
130999cafbc1SBarry Smith PetscFunctionBegin;
13109566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A));
13119566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B));
13123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
131399cafbc1SBarry Smith }
131499cafbc1SBarry Smith
13157dae84e0SHong Zhang /* Check if isrow is a subset of iscol_local, called by MatCreateSubMatrix_MPISBAIJ()
131636032a97SHong Zhang Input: isrow - distributed(parallel),
131736032a97SHong Zhang iscol_local - locally owned (seq)
131836032a97SHong Zhang */
ISEqual_private(IS isrow,IS iscol_local,PetscBool * flg)131966976f2fSJacob Faibussowitsch static PetscErrorCode ISEqual_private(IS isrow, IS iscol_local, PetscBool *flg)
1320d71ae5a4SJacob Faibussowitsch {
13218f46ffcaSHong Zhang PetscInt sz1, sz2, *a1, *a2, i, j, k, nmatch;
13228f46ffcaSHong Zhang const PetscInt *ptr1, *ptr2;
132336032a97SHong Zhang
132436032a97SHong Zhang PetscFunctionBegin;
132566976f2fSJacob Faibussowitsch *flg = PETSC_FALSE;
13269566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &sz1));
13279566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_local, &sz2));
132866976f2fSJacob Faibussowitsch if (sz1 > sz2) PetscFunctionReturn(PETSC_SUCCESS);
13298f46ffcaSHong Zhang
13309566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &ptr1));
13319566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &ptr2));
13328f46ffcaSHong Zhang
13339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sz1, &a1));
13349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sz2, &a2));
13359566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a1, ptr1, sz1));
13369566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a2, ptr2, sz2));
13379566063dSJacob Faibussowitsch PetscCall(PetscSortInt(sz1, a1));
13389566063dSJacob Faibussowitsch PetscCall(PetscSortInt(sz2, a2));
13398f46ffcaSHong Zhang
13408f46ffcaSHong Zhang nmatch = 0;
13418f46ffcaSHong Zhang k = 0;
13428f46ffcaSHong Zhang for (i = 0; i < sz1; i++) {
13438f46ffcaSHong Zhang for (j = k; j < sz2; j++) {
13448f46ffcaSHong Zhang if (a1[i] == a2[j]) {
13459371c9d4SSatish Balay k = j;
13469371c9d4SSatish Balay nmatch++;
13478f46ffcaSHong Zhang break;
13488f46ffcaSHong Zhang }
13498f46ffcaSHong Zhang }
13508f46ffcaSHong Zhang }
13519566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &ptr1));
13529566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &ptr2));
13539566063dSJacob Faibussowitsch PetscCall(PetscFree(a1));
13549566063dSJacob Faibussowitsch PetscCall(PetscFree(a2));
13551098a8e8SHong Zhang if (nmatch < sz1) {
13561098a8e8SHong Zhang *flg = PETSC_FALSE;
13571098a8e8SHong Zhang } else {
13581098a8e8SHong Zhang *flg = PETSC_TRUE;
13591098a8e8SHong Zhang }
13603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
13618f46ffcaSHong Zhang }
136236032a97SHong Zhang
MatCreateSubMatrix_MPISBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat * newmat)136366976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPISBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
1364d71ae5a4SJacob Faibussowitsch {
1365fdfbdca6SPierre Jolivet Mat C[2];
1366fdfbdca6SPierre Jolivet IS iscol_local, isrow_local;
1367fdfbdca6SPierre Jolivet PetscInt csize, csize_local, rsize;
1368fdfbdca6SPierre Jolivet PetscBool isequal, issorted, isidentity = PETSC_FALSE;
136936032a97SHong Zhang
137036032a97SHong Zhang PetscFunctionBegin;
13719566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize));
1372fdfbdca6SPierre Jolivet PetscCall(ISGetLocalSize(isrow, &rsize));
137336032a97SHong Zhang if (call == MAT_REUSE_MATRIX) {
13749566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
13755f80ce2aSJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
137636032a97SHong Zhang } else {
13779566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local));
13789566063dSJacob Faibussowitsch PetscCall(ISSorted(iscol_local, &issorted));
1379fdfbdca6SPierre Jolivet PetscCheck(issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, iscol must be sorted");
13808f46ffcaSHong Zhang }
1381fdfbdca6SPierre Jolivet PetscCall(ISEqual_private(isrow, iscol_local, &isequal));
1382fdfbdca6SPierre Jolivet if (!isequal) {
1383fdfbdca6SPierre Jolivet PetscCall(ISGetLocalSize(iscol_local, &csize_local));
1384fdfbdca6SPierre Jolivet isidentity = (PetscBool)(mat->cmap->N == csize_local);
1385fdfbdca6SPierre Jolivet if (!isidentity) {
1386fdfbdca6SPierre Jolivet if (call == MAT_REUSE_MATRIX) {
1387fdfbdca6SPierre Jolivet PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather_other", (PetscObject *)&isrow_local));
1388fdfbdca6SPierre Jolivet PetscCheck(isrow_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
1389fdfbdca6SPierre Jolivet } else {
1390fdfbdca6SPierre Jolivet PetscCall(ISAllGather(isrow, &isrow_local));
1391fdfbdca6SPierre Jolivet PetscCall(ISSorted(isrow_local, &issorted));
1392fdfbdca6SPierre Jolivet PetscCheck(issorted, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "For symmetric format, isrow must be sorted");
1393fdfbdca6SPierre Jolivet }
1394fdfbdca6SPierre Jolivet }
1395fdfbdca6SPierre Jolivet }
13967dae84e0SHong Zhang /* now call MatCreateSubMatrix_MPIBAIJ() */
1397fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, isequal || isidentity ? call : MAT_INITIAL_MATRIX, isequal || isidentity ? newmat : C, (PetscBool)(isequal || isidentity)));
1398fdfbdca6SPierre Jolivet if (!isequal && !isidentity) {
13998f46ffcaSHong Zhang if (call == MAT_INITIAL_MATRIX) {
1400fdfbdca6SPierre Jolivet IS intersect;
1401fdfbdca6SPierre Jolivet PetscInt ni;
1402fdfbdca6SPierre Jolivet
1403fdfbdca6SPierre Jolivet PetscCall(ISIntersect(isrow_local, iscol_local, &intersect));
1404fdfbdca6SPierre Jolivet PetscCall(ISGetLocalSize(intersect, &ni));
1405fdfbdca6SPierre Jolivet PetscCall(ISDestroy(&intersect));
1406fdfbdca6SPierre Jolivet PetscCheck(ni == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot create such a submatrix: for symmetric format, when requesting an off-diagonal submatrix, isrow and iscol should have an empty intersection (number of common indices is %" PetscInt_FMT ")", ni);
1407fdfbdca6SPierre Jolivet }
1408fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, iscol, isrow_local, rsize, MAT_INITIAL_MATRIX, C + 1, PETSC_FALSE));
1409fdfbdca6SPierre Jolivet PetscCall(MatTranspose(C[1], MAT_INPLACE_MATRIX, C + 1));
1410fdfbdca6SPierre Jolivet PetscCall(MatAXPY(C[0], 1.0, C[1], DIFFERENT_NONZERO_PATTERN));
1411fdfbdca6SPierre Jolivet if (call == MAT_REUSE_MATRIX) PetscCall(MatCopy(C[0], *newmat, SAME_NONZERO_PATTERN));
1412fdfbdca6SPierre Jolivet else if (mat->rmap->bs == 1) PetscCall(MatConvert(C[0], MATAIJ, MAT_INITIAL_MATRIX, newmat));
1413fdfbdca6SPierre Jolivet else PetscCall(MatCopy(C[0], *newmat, SAME_NONZERO_PATTERN));
1414fdfbdca6SPierre Jolivet PetscCall(MatDestroy(C));
1415fdfbdca6SPierre Jolivet PetscCall(MatDestroy(C + 1));
1416fdfbdca6SPierre Jolivet }
1417fdfbdca6SPierre Jolivet if (call == MAT_INITIAL_MATRIX) {
1418fdfbdca6SPierre Jolivet if (!isequal && !isidentity) {
1419fdfbdca6SPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather_other", (PetscObject)isrow_local));
1420fdfbdca6SPierre Jolivet PetscCall(ISDestroy(&isrow_local));
1421fdfbdca6SPierre Jolivet }
14229566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
14239566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local));
14248f46ffcaSHong Zhang }
14253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
14268f46ffcaSHong Zhang }
14278f46ffcaSHong Zhang
MatZeroEntries_MPISBAIJ(Mat A)142866976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPISBAIJ(Mat A)
1429d71ae5a4SJacob Faibussowitsch {
1430a30f8f8cSSatish Balay Mat_MPISBAIJ *l = (Mat_MPISBAIJ *)A->data;
1431a30f8f8cSSatish Balay
1432a30f8f8cSSatish Balay PetscFunctionBegin;
14339566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A));
14349566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B));
14353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1436a30f8f8cSSatish Balay }
1437a30f8f8cSSatish Balay
MatGetInfo_MPISBAIJ(Mat matin,MatInfoType flag,MatInfo * info)143866976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPISBAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1439d71ae5a4SJacob Faibussowitsch {
1440a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)matin->data;
1441a30f8f8cSSatish Balay Mat A = a->A, B = a->B;
14423966268fSBarry Smith PetscLogDouble isend[5], irecv[5];
1443a30f8f8cSSatish Balay
1444a30f8f8cSSatish Balay PetscFunctionBegin;
1445d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs;
144626fbe8dcSKarl Rupp
14479566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info));
144826fbe8dcSKarl Rupp
14499371c9d4SSatish Balay isend[0] = info->nz_used;
14509371c9d4SSatish Balay isend[1] = info->nz_allocated;
14519371c9d4SSatish Balay isend[2] = info->nz_unneeded;
14529371c9d4SSatish Balay isend[3] = info->memory;
14539371c9d4SSatish Balay isend[4] = info->mallocs;
145426fbe8dcSKarl Rupp
14559566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info));
145626fbe8dcSKarl Rupp
14579371c9d4SSatish Balay isend[0] += info->nz_used;
14589371c9d4SSatish Balay isend[1] += info->nz_allocated;
14599371c9d4SSatish Balay isend[2] += info->nz_unneeded;
14609371c9d4SSatish Balay isend[3] += info->memory;
14619371c9d4SSatish Balay isend[4] += info->mallocs;
1462a30f8f8cSSatish Balay if (flag == MAT_LOCAL) {
1463a30f8f8cSSatish Balay info->nz_used = isend[0];
1464a30f8f8cSSatish Balay info->nz_allocated = isend[1];
1465a30f8f8cSSatish Balay info->nz_unneeded = isend[2];
1466a30f8f8cSSatish Balay info->memory = isend[3];
1467a30f8f8cSSatish Balay info->mallocs = isend[4];
1468a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_MAX) {
1469462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
147026fbe8dcSKarl Rupp
1471a30f8f8cSSatish Balay info->nz_used = irecv[0];
1472a30f8f8cSSatish Balay info->nz_allocated = irecv[1];
1473a30f8f8cSSatish Balay info->nz_unneeded = irecv[2];
1474a30f8f8cSSatish Balay info->memory = irecv[3];
1475a30f8f8cSSatish Balay info->mallocs = irecv[4];
1476a30f8f8cSSatish Balay } else if (flag == MAT_GLOBAL_SUM) {
1477462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
147826fbe8dcSKarl Rupp
1479a30f8f8cSSatish Balay info->nz_used = irecv[0];
1480a30f8f8cSSatish Balay info->nz_allocated = irecv[1];
1481a30f8f8cSSatish Balay info->nz_unneeded = irecv[2];
1482a30f8f8cSSatish Balay info->memory = irecv[3];
1483a30f8f8cSSatish Balay info->mallocs = irecv[4];
148498921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag);
1485a30f8f8cSSatish Balay info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */
1486a30f8f8cSSatish Balay info->fill_ratio_needed = 0;
1487a30f8f8cSSatish Balay info->factor_mallocs = 0;
14883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1489a30f8f8cSSatish Balay }
1490a30f8f8cSSatish Balay
MatSetOption_MPISBAIJ(Mat A,MatOption op,PetscBool flg)149166976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPISBAIJ(Mat A, MatOption op, PetscBool flg)
1492d71ae5a4SJacob Faibussowitsch {
1493a30f8f8cSSatish Balay Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1494d0d4cfc2SHong Zhang Mat_SeqSBAIJ *aA = (Mat_SeqSBAIJ *)a->A->data;
1495a30f8f8cSSatish Balay
1496a30f8f8cSSatish Balay PetscFunctionBegin;
1497e98b92d7SKris Buschelman switch (op) {
1498512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS:
1499e98b92d7SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR:
150028b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR:
1501a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN:
1502e98b92d7SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR:
150343674050SBarry Smith MatCheckPreallocated(A, 1);
15049566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg));
15059566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg));
1506e98b92d7SKris Buschelman break;
1507e98b92d7SKris Buschelman case MAT_ROW_ORIENTED:
150843674050SBarry Smith MatCheckPreallocated(A, 1);
15094e0d8c25SBarry Smith a->roworiented = flg;
151026fbe8dcSKarl Rupp
15119566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg));
15129566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg));
1513e98b92d7SKris Buschelman break;
1514d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES:
1515d71ae5a4SJacob Faibussowitsch a->donotstash = flg;
1516d71ae5a4SJacob Faibussowitsch break;
1517d71ae5a4SJacob Faibussowitsch case MAT_USE_HASH_TABLE:
1518d71ae5a4SJacob Faibussowitsch a->ht_flag = flg;
1519d71ae5a4SJacob Faibussowitsch break;
1520d71ae5a4SJacob Faibussowitsch case MAT_HERMITIAN:
15219725ddffSPierre Jolivet if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg));
15220f2140c7SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1523eb1ec7c1SStefano Zampini if (flg) { /* need different mat-vec ops */
1524547795f9SHong Zhang A->ops->mult = MatMult_MPISBAIJ_Hermitian;
1525eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ_Hermitian;
1526eb1ec7c1SStefano Zampini A->ops->multtranspose = NULL;
1527eb1ec7c1SStefano Zampini A->ops->multtransposeadd = NULL;
1528eb1ec7c1SStefano Zampini }
15290f2140c7SStefano Zampini #endif
1530eeffb40dSHong Zhang break;
1531ffa07934SHong Zhang case MAT_SPD:
1532d71ae5a4SJacob Faibussowitsch case MAT_SYMMETRIC:
15339725ddffSPierre Jolivet if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg));
1534eb1ec7c1SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1535eb1ec7c1SStefano Zampini if (flg) { /* restore to use default mat-vec ops */
1536eb1ec7c1SStefano Zampini A->ops->mult = MatMult_MPISBAIJ;
1537eb1ec7c1SStefano Zampini A->ops->multadd = MatMultAdd_MPISBAIJ;
1538eb1ec7c1SStefano Zampini A->ops->multtranspose = MatMult_MPISBAIJ;
1539eb1ec7c1SStefano Zampini A->ops->multtransposeadd = MatMultAdd_MPISBAIJ;
1540eb1ec7c1SStefano Zampini }
1541eb1ec7c1SStefano Zampini #endif
1542eeffb40dSHong Zhang break;
154377e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC:
15449725ddffSPierre Jolivet if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg));
1545eeffb40dSHong Zhang break;
1546d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_LOWER_TRIANGULAR:
1547d71ae5a4SJacob Faibussowitsch case MAT_ERROR_LOWER_TRIANGULAR:
1548d71ae5a4SJacob Faibussowitsch aA->ignore_ltriangular = flg;
1549d71ae5a4SJacob Faibussowitsch break;
1550d71ae5a4SJacob Faibussowitsch case MAT_GETROW_UPPERTRIANGULAR:
1551d71ae5a4SJacob Faibussowitsch aA->getrow_utriangular = flg;
1552d71ae5a4SJacob Faibussowitsch break;
1553d71ae5a4SJacob Faibussowitsch default:
1554888c827cSStefano Zampini break;
1555a30f8f8cSSatish Balay }
15563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1557a30f8f8cSSatish Balay }
1558a30f8f8cSSatish Balay
MatTranspose_MPISBAIJ(Mat A,MatReuse reuse,Mat * B)155966976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPISBAIJ(Mat A, MatReuse reuse, Mat *B)
1560d71ae5a4SJacob Faibussowitsch {
1561a30f8f8cSSatish Balay PetscFunctionBegin;
15627fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *B));
1563cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX) {
15649566063dSJacob Faibussowitsch PetscCall(MatDuplicate(A, MAT_COPY_VALUES, B));
1565cf37664fSBarry Smith } else if (reuse == MAT_REUSE_MATRIX) {
15669566063dSJacob Faibussowitsch PetscCall(MatCopy(A, *B, SAME_NONZERO_PATTERN));
1567fc4dec0aSBarry Smith }
15683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1569a30f8f8cSSatish Balay }
1570a30f8f8cSSatish Balay
MatDiagonalScale_MPISBAIJ(Mat mat,Vec ll,Vec rr)157166976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPISBAIJ(Mat mat, Vec ll, Vec rr)
1572d71ae5a4SJacob Faibussowitsch {
1573a30f8f8cSSatish Balay Mat_MPISBAIJ *baij = (Mat_MPISBAIJ *)mat->data;
1574a30f8f8cSSatish Balay Mat a = baij->A, b = baij->B;
15755e90f9d9SHong Zhang PetscInt nv, m, n;
1576a30f8f8cSSatish Balay
1577a30f8f8cSSatish Balay PetscFunctionBegin;
15783ba16761SJacob Faibussowitsch if (!ll) PetscFunctionReturn(PETSC_SUCCESS);
1579b3bf805bSHong Zhang
15809566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n));
15815f80ce2aSJacob Faibussowitsch PetscCheck(m == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "For symmetric format, local size %" PetscInt_FMT " %" PetscInt_FMT " must be same", m, n);
1582b3bf805bSHong Zhang
15839566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &nv));
15845f80ce2aSJacob Faibussowitsch PetscCheck(nv == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left and right vector non-conforming local size");
15855e90f9d9SHong Zhang
15869566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
15875e90f9d9SHong Zhang
15885e90f9d9SHong Zhang /* left diagonalscale the off-diagonal part */
1589dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL);
15905e90f9d9SHong Zhang
15915e90f9d9SHong Zhang /* scale the diagonal part */
1592dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr);
1593a30f8f8cSSatish Balay
15945e90f9d9SHong Zhang /* right diagonalscale the off-diagonal part */
15959566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1596dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec);
15973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1598a30f8f8cSSatish Balay }
1599a30f8f8cSSatish Balay
MatSetUnfactored_MPISBAIJ(Mat A)160066976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPISBAIJ(Mat A)
1601d71ae5a4SJacob Faibussowitsch {
1602f3566a2aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
1603a30f8f8cSSatish Balay
1604a30f8f8cSSatish Balay PetscFunctionBegin;
16059566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A));
16063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1607a30f8f8cSSatish Balay }
1608a30f8f8cSSatish Balay
16096849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPISBAIJ(Mat, MatDuplicateOption, Mat *);
1610a30f8f8cSSatish Balay
MatEqual_MPISBAIJ(Mat A,Mat B,PetscBool * flag)161166976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPISBAIJ(Mat A, Mat B, PetscBool *flag)
1612d71ae5a4SJacob Faibussowitsch {
1613a30f8f8cSSatish Balay Mat_MPISBAIJ *matB = (Mat_MPISBAIJ *)B->data, *matA = (Mat_MPISBAIJ *)A->data;
1614a30f8f8cSSatish Balay Mat a, b, c, d;
1615ace3abfcSBarry Smith PetscBool flg;
1616a30f8f8cSSatish Balay
1617a30f8f8cSSatish Balay PetscFunctionBegin;
16189371c9d4SSatish Balay a = matA->A;
16199371c9d4SSatish Balay b = matA->B;
16209371c9d4SSatish Balay c = matB->A;
16219371c9d4SSatish Balay d = matB->B;
1622a30f8f8cSSatish Balay
16239566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg));
162448a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg));
16255440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
16263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1627a30f8f8cSSatish Balay }
1628a30f8f8cSSatish Balay
MatCopy_MPISBAIJ(Mat A,Mat B,MatStructure str)162966976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPISBAIJ(Mat A, Mat B, MatStructure str)
1630d71ae5a4SJacob Faibussowitsch {
16314c7a3774SStefano Zampini PetscBool isbaij;
16323c896bc6SHong Zhang
16333c896bc6SHong Zhang PetscFunctionBegin;
16349566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &isbaij, MATSEQSBAIJ, MATMPISBAIJ, ""));
16355f80ce2aSJacob Faibussowitsch PetscCheck(isbaij, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "Not for matrix type %s", ((PetscObject)B)->type_name);
16363c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
16373c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
16389566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(A));
16399566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str));
16409566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(A));
16413c896bc6SHong Zhang } else {
16424c7a3774SStefano Zampini Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
16434c7a3774SStefano Zampini Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data;
16444c7a3774SStefano Zampini
16459566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str));
16469566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str));
16473c896bc6SHong Zhang }
16489566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B));
16493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
16503c896bc6SHong Zhang }
16513c896bc6SHong Zhang
MatAXPY_MPISBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)165266976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPISBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
1653d71ae5a4SJacob Faibussowitsch {
16544fe895cdSHong Zhang Mat_MPISBAIJ *xx = (Mat_MPISBAIJ *)X->data, *yy = (Mat_MPISBAIJ *)Y->data;
16554fe895cdSHong Zhang PetscBLASInt bnz, one = 1;
16564fe895cdSHong Zhang Mat_SeqSBAIJ *xa, *ya;
16574fe895cdSHong Zhang Mat_SeqBAIJ *xb, *yb;
16584fe895cdSHong Zhang
16594fe895cdSHong Zhang PetscFunctionBegin;
16604fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) {
16614fe895cdSHong Zhang PetscScalar alpha = a;
16624fe895cdSHong Zhang xa = (Mat_SeqSBAIJ *)xx->A->data;
16634fe895cdSHong Zhang ya = (Mat_SeqSBAIJ *)yy->A->data;
16649566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(xa->nz, &bnz));
1665792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xa->a, &one, ya->a, &one));
16664fe895cdSHong Zhang xb = (Mat_SeqBAIJ *)xx->B->data;
16674fe895cdSHong Zhang yb = (Mat_SeqBAIJ *)yy->B->data;
16689566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(xb->nz, &bnz));
1669792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, xb->a, &one, yb->a, &one));
16709566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y));
1671ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
16729566063dSJacob Faibussowitsch PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE));
16739566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str));
16749566063dSJacob Faibussowitsch PetscCall(MatSetOption(X, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE));
16754fe895cdSHong Zhang } else {
16764de5dceeSHong Zhang Mat B;
16774de5dceeSHong Zhang PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs;
16785f80ce2aSJacob Faibussowitsch PetscCheck(bs == X->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrices must have same block size");
16799566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(X));
16809566063dSJacob Faibussowitsch PetscCall(MatGetRowUpperTriangular(Y));
16819566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
16829566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
16839566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
16849566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
16859566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N));
16869566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B, Y, Y));
16879566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPISBAIJ));
16889566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqSBAIJ(yy->A, xx->A, nnz_d));
16899566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
16909566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o));
16919566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
16929566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B));
16939566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d));
16949566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o));
16959566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(X));
16969566063dSJacob Faibussowitsch PetscCall(MatRestoreRowUpperTriangular(Y));
16974fe895cdSHong Zhang }
16983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
16994fe895cdSHong Zhang }
17004fe895cdSHong Zhang
MatCreateSubMatrices_MPISBAIJ(Mat A,PetscInt n,const IS irow[],const IS icol[],MatReuse scall,Mat * B[])170166976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrices_MPISBAIJ(Mat A, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *B[])
1702d71ae5a4SJacob Faibussowitsch {
17031302d50aSBarry Smith PetscInt i;
1704afebec48SHong Zhang PetscBool flg;
1705a5e6ed63SBarry Smith
17066849ba73SBarry Smith PetscFunctionBegin;
17079566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIBAIJ(A, n, irow, icol, scall, B)); /* B[] are sbaij matrices */
1708a5e6ed63SBarry Smith for (i = 0; i < n; i++) {
17099566063dSJacob Faibussowitsch PetscCall(ISEqual(irow[i], icol[i], &flg));
171048a46eb9SPierre Jolivet if (!flg) PetscCall(MatSeqSBAIJZeroOps_Private(*B[i]));
17114dcd73b1SHong Zhang }
17123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1713a5e6ed63SBarry Smith }
1714a5e6ed63SBarry Smith
MatShift_MPISBAIJ(Mat Y,PetscScalar a)171566976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPISBAIJ(Mat Y, PetscScalar a)
1716d71ae5a4SJacob Faibussowitsch {
17177d68702bSBarry Smith Mat_MPISBAIJ *maij = (Mat_MPISBAIJ *)Y->data;
17186f33a894SBarry Smith Mat_SeqSBAIJ *aij = (Mat_SeqSBAIJ *)maij->A->data;
17197d68702bSBarry Smith
17207d68702bSBarry Smith PetscFunctionBegin;
17216f33a894SBarry Smith if (!Y->preallocated) {
17229566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL));
17236f33a894SBarry Smith } else if (!aij->nz) {
1724b83222d8SBarry Smith PetscInt nonew = aij->nonew;
17259566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL));
1726b83222d8SBarry Smith aij->nonew = nonew;
17277d68702bSBarry Smith }
17289566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a));
17293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
17307d68702bSBarry Smith }
17317d68702bSBarry Smith
MatGetDiagonalBlock_MPISBAIJ(Mat A,Mat * a)173266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPISBAIJ(Mat A, Mat *a)
1733d71ae5a4SJacob Faibussowitsch {
1734a5b7ff6bSBarry Smith PetscFunctionBegin;
1735a5b7ff6bSBarry Smith *a = ((Mat_MPISBAIJ *)A->data)->A;
17363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1737a5b7ff6bSBarry Smith }
17383b49f96aSBarry Smith
MatEliminateZeros_MPISBAIJ(Mat A,PetscBool keep)173917ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPISBAIJ(Mat A, PetscBool keep)
174017ea310bSPierre Jolivet {
174117ea310bSPierre Jolivet Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
174217ea310bSPierre Jolivet
174317ea310bSPierre Jolivet PetscFunctionBegin;
174417ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqSBAIJ(a->A, keep)); // possibly keep zero diagonal coefficients
174517ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients
174617ea310bSPierre Jolivet PetscFunctionReturn(PETSC_SUCCESS);
174717ea310bSPierre Jolivet }
174817ea310bSPierre Jolivet
17496cff0a6bSPierre Jolivet static PetscErrorCode MatLoad_MPISBAIJ(Mat, PetscViewer);
1750789afff4SPierre Jolivet static PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat, Vec, PetscInt[]);
1751789afff4SPierre Jolivet static PetscErrorCode MatSOR_MPISBAIJ(Mat, Vec, PetscReal, MatSORType, PetscReal, PetscInt, PetscInt, Vec);
17526cff0a6bSPierre Jolivet
17533964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPISBAIJ,
1754a30f8f8cSSatish Balay MatGetRow_MPISBAIJ,
1755a30f8f8cSSatish Balay MatRestoreRow_MPISBAIJ,
1756a9d4b620SHong Zhang MatMult_MPISBAIJ,
175797304618SKris Buschelman /* 4*/ MatMultAdd_MPISBAIJ,
1758431c96f7SBarry Smith MatMult_MPISBAIJ, /* transpose versions are same as non-transpose */
1759431c96f7SBarry Smith MatMultAdd_MPISBAIJ,
1760f4259b30SLisandro Dalcin NULL,
1761f4259b30SLisandro Dalcin NULL,
1762f4259b30SLisandro Dalcin NULL,
1763f4259b30SLisandro Dalcin /* 10*/ NULL,
1764f4259b30SLisandro Dalcin NULL,
1765f4259b30SLisandro Dalcin NULL,
176641f059aeSBarry Smith MatSOR_MPISBAIJ,
1767a30f8f8cSSatish Balay MatTranspose_MPISBAIJ,
176897304618SKris Buschelman /* 15*/ MatGetInfo_MPISBAIJ,
1769a30f8f8cSSatish Balay MatEqual_MPISBAIJ,
1770a30f8f8cSSatish Balay MatGetDiagonal_MPISBAIJ,
1771a30f8f8cSSatish Balay MatDiagonalScale_MPISBAIJ,
1772a30f8f8cSSatish Balay MatNorm_MPISBAIJ,
177397304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPISBAIJ,
1774a30f8f8cSSatish Balay MatAssemblyEnd_MPISBAIJ,
1775a30f8f8cSSatish Balay MatSetOption_MPISBAIJ,
1776a30f8f8cSSatish Balay MatZeroEntries_MPISBAIJ,
1777f4259b30SLisandro Dalcin /* 24*/ NULL,
1778f4259b30SLisandro Dalcin NULL,
1779f4259b30SLisandro Dalcin NULL,
1780f4259b30SLisandro Dalcin NULL,
1781f4259b30SLisandro Dalcin NULL,
178226cec326SBarry Smith /* 29*/ MatSetUp_MPI_Hash,
1783f4259b30SLisandro Dalcin NULL,
1784f4259b30SLisandro Dalcin NULL,
1785a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPISBAIJ,
1786f4259b30SLisandro Dalcin NULL,
1787d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPISBAIJ,
1788f4259b30SLisandro Dalcin NULL,
1789f4259b30SLisandro Dalcin NULL,
1790f4259b30SLisandro Dalcin NULL,
1791f4259b30SLisandro Dalcin NULL,
1792d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPISBAIJ,
17937dae84e0SHong Zhang MatCreateSubMatrices_MPISBAIJ,
1794d94109b8SHong Zhang MatIncreaseOverlap_MPISBAIJ,
1795a30f8f8cSSatish Balay MatGetValues_MPISBAIJ,
17963c896bc6SHong Zhang MatCopy_MPISBAIJ,
1797f4259b30SLisandro Dalcin /* 44*/ NULL,
1798a30f8f8cSSatish Balay MatScale_MPISBAIJ,
17997d68702bSBarry Smith MatShift_MPISBAIJ,
1800f4259b30SLisandro Dalcin NULL,
1801f4259b30SLisandro Dalcin NULL,
1802f4259b30SLisandro Dalcin /* 49*/ NULL,
1803f4259b30SLisandro Dalcin NULL,
1804f4259b30SLisandro Dalcin NULL,
1805f4259b30SLisandro Dalcin NULL,
1806f4259b30SLisandro Dalcin NULL,
1807f4259b30SLisandro Dalcin /* 54*/ NULL,
1808f4259b30SLisandro Dalcin NULL,
1809a30f8f8cSSatish Balay MatSetUnfactored_MPISBAIJ,
1810f4259b30SLisandro Dalcin NULL,
1811a30f8f8cSSatish Balay MatSetValuesBlocked_MPISBAIJ,
18127dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPISBAIJ,
1813f4259b30SLisandro Dalcin NULL,
1814f4259b30SLisandro Dalcin NULL,
1815f4259b30SLisandro Dalcin NULL,
1816f4259b30SLisandro Dalcin NULL,
1817f4259b30SLisandro Dalcin /* 64*/ NULL,
1818f4259b30SLisandro Dalcin NULL,
1819f4259b30SLisandro Dalcin NULL,
1820f4259b30SLisandro Dalcin NULL,
18218bb0f5c6SPierre Jolivet MatGetRowMaxAbs_MPISBAIJ,
18228bb0f5c6SPierre Jolivet /* 69*/ NULL,
182328d58a37SPierre Jolivet MatConvert_MPISBAIJ_Basic,
1824f4259b30SLisandro Dalcin NULL,
1825f4259b30SLisandro Dalcin NULL,
1826f4259b30SLisandro Dalcin NULL,
1827f4259b30SLisandro Dalcin NULL,
1828f4259b30SLisandro Dalcin NULL,
1829f4259b30SLisandro Dalcin NULL,
1830f4259b30SLisandro Dalcin NULL,
18315bba2384SShri Abhyankar MatLoad_MPISBAIJ,
18328bb0f5c6SPierre Jolivet /* 79*/ NULL,
18338bb0f5c6SPierre Jolivet NULL,
18348bb0f5c6SPierre Jolivet NULL,
18358bb0f5c6SPierre Jolivet NULL,
18368bb0f5c6SPierre Jolivet NULL,
1837f4259b30SLisandro Dalcin /* 84*/ NULL,
1838f4259b30SLisandro Dalcin NULL,
1839f4259b30SLisandro Dalcin NULL,
1840f4259b30SLisandro Dalcin NULL,
1841f4259b30SLisandro Dalcin NULL,
1842f4259b30SLisandro Dalcin /* 89*/ NULL,
1843f4259b30SLisandro Dalcin NULL,
1844f4259b30SLisandro Dalcin NULL,
1845f4259b30SLisandro Dalcin NULL,
18468bb0f5c6SPierre Jolivet MatConjugate_MPISBAIJ,
1847f4259b30SLisandro Dalcin /* 94*/ NULL,
1848f4259b30SLisandro Dalcin NULL,
184999cafbc1SBarry Smith MatRealPart_MPISBAIJ,
1850d0d4cfc2SHong Zhang MatImaginaryPart_MPISBAIJ,
1851d0d4cfc2SHong Zhang MatGetRowUpperTriangular_MPISBAIJ,
18528bb0f5c6SPierre Jolivet /* 99*/ MatRestoreRowUpperTriangular_MPISBAIJ,
18538bb0f5c6SPierre Jolivet NULL,
18548bb0f5c6SPierre Jolivet NULL,
18558bb0f5c6SPierre Jolivet NULL,
18568bb0f5c6SPierre Jolivet NULL,
1857421480d9SBarry Smith /*104*/ NULL,
18588bb0f5c6SPierre Jolivet NULL,
18598bb0f5c6SPierre Jolivet NULL,
18608bb0f5c6SPierre Jolivet NULL,
18618bb0f5c6SPierre Jolivet NULL,
1862f4259b30SLisandro Dalcin /*109*/ NULL,
1863f4259b30SLisandro Dalcin NULL,
1864f4259b30SLisandro Dalcin NULL,
1865f4259b30SLisandro Dalcin NULL,
18668bb0f5c6SPierre Jolivet NULL,
1867f4259b30SLisandro Dalcin /*114*/ NULL,
1868f4259b30SLisandro Dalcin NULL,
1869f4259b30SLisandro Dalcin NULL,
1870f4259b30SLisandro Dalcin NULL,
1871f4259b30SLisandro Dalcin NULL,
1872f4259b30SLisandro Dalcin /*119*/ NULL,
1873f4259b30SLisandro Dalcin NULL,
1874f4259b30SLisandro Dalcin NULL,
1875f4259b30SLisandro Dalcin NULL,
1876f4259b30SLisandro Dalcin NULL,
1877f4259b30SLisandro Dalcin /*124*/ NULL,
1878f4259b30SLisandro Dalcin NULL,
18798bb0f5c6SPierre Jolivet MatSetBlockSizes_Default,
1880f4259b30SLisandro Dalcin NULL,
1881f4259b30SLisandro Dalcin NULL,
1882421480d9SBarry Smith /*129*/ NULL,
18838bb0f5c6SPierre Jolivet MatCreateMPIMatConcatenateSeqMat_MPISBAIJ,
1884f4259b30SLisandro Dalcin NULL,
1885f4259b30SLisandro Dalcin NULL,
1886421480d9SBarry Smith NULL,
1887f4259b30SLisandro Dalcin /*134*/ NULL,
1888f4259b30SLisandro Dalcin NULL,
1889eede4a3fSMark Adams MatEliminateZeros_MPISBAIJ,
18904cc2b5b5SPierre Jolivet NULL,
189142ce410bSJunchao Zhang NULL,
1892421480d9SBarry Smith /*139*/ NULL,
189342ce410bSJunchao Zhang NULL,
189403db1824SAlex Lindsay MatCopyHashToXAIJ_MPI_Hash,
1895c2be7ffeSStefano Zampini NULL,
189603db1824SAlex Lindsay NULL};
1897a30f8f8cSSatish Balay
MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt * d_nnz,PetscInt o_nz,const PetscInt * o_nnz)189866976f2fSJacob Faibussowitsch static PetscErrorCode MatMPISBAIJSetPreallocation_MPISBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz)
1899d71ae5a4SJacob Faibussowitsch {
1900476417e5SBarry Smith Mat_MPISBAIJ *b = (Mat_MPISBAIJ *)B->data;
1901535b19f3SBarry Smith PetscInt i, mbs, Mbs;
19025d2a9ed1SStefano Zampini PetscMPIInt size;
1903a23d5eceSKris Buschelman
1904a23d5eceSKris Buschelman PetscFunctionBegin;
1905ad79cf63SBarry Smith if (B->hash_active) {
1906aea10558SJacob Faibussowitsch B->ops[0] = b->cops;
1907ad79cf63SBarry Smith B->hash_active = PETSC_FALSE;
1908ad79cf63SBarry Smith }
1909ad79cf63SBarry Smith if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash));
191058b7e2c1SStefano Zampini PetscCall(MatSetBlockSize(B, bs));
19119566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap));
19129566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap));
19139566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
19145f80ce2aSJacob Faibussowitsch PetscCheck(B->rmap->N <= B->cmap->N, PetscObjectComm((PetscObject)B), PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->N, B->cmap->N);
19155f80ce2aSJacob Faibussowitsch PetscCheck(B->rmap->n <= B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "MPISBAIJ matrix cannot have more local rows %" PetscInt_FMT " than columns %" PetscInt_FMT, B->rmap->n, B->cmap->n);
1916899cda47SBarry Smith
1917d0f46423SBarry Smith mbs = B->rmap->n / bs;
1918d0f46423SBarry Smith Mbs = B->rmap->N / bs;
19195f80ce2aSJacob Faibussowitsch PetscCheck(mbs * bs == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "No of local rows %" PetscInt_FMT " must be divisible by blocksize %" PetscInt_FMT, B->rmap->N, bs);
1920a23d5eceSKris Buschelman
1921d0f46423SBarry Smith B->rmap->bs = bs;
1922a23d5eceSKris Buschelman b->bs2 = bs * bs;
1923a23d5eceSKris Buschelman b->mbs = mbs;
1924a23d5eceSKris Buschelman b->Mbs = Mbs;
1925de64b629SHong Zhang b->nbs = B->cmap->n / bs;
1926de64b629SHong Zhang b->Nbs = B->cmap->N / bs;
1927a23d5eceSKris Buschelman
1928ad540459SPierre Jolivet for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs;
1929d0f46423SBarry Smith b->rstartbs = B->rmap->rstart / bs;
1930d0f46423SBarry Smith b->rendbs = B->rmap->rend / bs;
1931a23d5eceSKris Buschelman
1932d0f46423SBarry Smith b->cstartbs = B->cmap->rstart / bs;
1933d0f46423SBarry Smith b->cendbs = B->cmap->rend / bs;
1934a23d5eceSKris Buschelman
1935cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
1936eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap));
1937cb7b82ddSBarry Smith #else
19389566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap));
1939cb7b82ddSBarry Smith #endif
19409566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray));
19419566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec));
19429566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx));
19439566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec0));
19449566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec0b));
19459566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1));
19469566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1a));
19479566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->slvec1b));
19489566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->sMvctx));
1949cb7b82ddSBarry Smith
19509566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
1951c508b908SBarry Smith
1952c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B);
19539566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B));
19549566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
19559566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
19569566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQBAIJ));
1957c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B);
1958cb7b82ddSBarry Smith
1959c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A);
1960ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A));
19619566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
19629566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
19639566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQSBAIJ));
1964c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A);
1965a23d5eceSKris Buschelman
19669566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(b->A, bs, d_nz, d_nnz));
19679566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz));
196826fbe8dcSKarl Rupp
1969526dfc15SBarry Smith B->preallocated = PETSC_TRUE;
1970cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE;
1971cb7b82ddSBarry Smith B->assembled = PETSC_FALSE;
19723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1973a23d5eceSKris Buschelman }
1974a23d5eceSKris Buschelman
MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])197566976f2fSJacob Faibussowitsch static PetscErrorCode MatMPISBAIJSetPreallocationCSR_MPISBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[])
1976d71ae5a4SJacob Faibussowitsch {
197702106b30SBarry Smith PetscInt m, rstart, cend;
1978f4259b30SLisandro Dalcin PetscInt i, j, d, nz, bd, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL;
1979f4259b30SLisandro Dalcin const PetscInt *JJ = NULL;
1980f4259b30SLisandro Dalcin PetscScalar *values = NULL;
1981bb80cfbbSStefano Zampini PetscBool roworiented = ((Mat_MPISBAIJ *)B->data)->roworiented;
19823bd0feecSPierre Jolivet PetscBool nooffprocentries;
1983dfb205c3SBarry Smith
1984dfb205c3SBarry Smith PetscFunctionBegin;
19855f80ce2aSJacob Faibussowitsch PetscCheck(bs >= 1, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_OUTOFRANGE, "Invalid block size specified, must be positive but it is %" PetscInt_FMT, bs);
19869566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap, bs));
19879566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap, bs));
19889566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap));
19899566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap));
19909566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
1991dfb205c3SBarry Smith m = B->rmap->n / bs;
1992dfb205c3SBarry Smith rstart = B->rmap->rstart / bs;
1993dfb205c3SBarry Smith cend = B->cmap->rend / bs;
1994dfb205c3SBarry Smith
19955f80ce2aSJacob Faibussowitsch PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]);
19969566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz));
1997dfb205c3SBarry Smith for (i = 0; i < m; i++) {
1998dfb205c3SBarry Smith nz = ii[i + 1] - ii[i];
19995f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz);
20004cf0e950SBarry Smith /* count the ones on the diagonal and above, split into diagonal and off-diagonal portions. */
2001dfb205c3SBarry Smith JJ = jj + ii[i];
20020cd7f59aSBarry Smith bd = 0;
2003dfb205c3SBarry Smith for (j = 0; j < nz; j++) {
20040cd7f59aSBarry Smith if (*JJ >= i + rstart) break;
2005dfb205c3SBarry Smith JJ++;
20060cd7f59aSBarry Smith bd++;
2007dfb205c3SBarry Smith }
2008dfb205c3SBarry Smith d = 0;
2009dfb205c3SBarry Smith for (; j < nz; j++) {
2010dfb205c3SBarry Smith if (*JJ++ >= cend) break;
2011dfb205c3SBarry Smith d++;
2012dfb205c3SBarry Smith }
2013dfb205c3SBarry Smith d_nnz[i] = d;
20140cd7f59aSBarry Smith o_nnz[i] = nz - d - bd;
20150cd7f59aSBarry Smith nz = nz - bd;
20160cd7f59aSBarry Smith nz_max = PetscMax(nz_max, nz);
2017dfb205c3SBarry Smith }
20189566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz));
20199566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_IGNORE_LOWER_TRIANGULAR, PETSC_TRUE));
20209566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz));
2021dfb205c3SBarry Smith
2022dfb205c3SBarry Smith values = (PetscScalar *)V;
202348a46eb9SPierre Jolivet if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values));
2024dfb205c3SBarry Smith for (i = 0; i < m; i++) {
2025dfb205c3SBarry Smith PetscInt row = i + rstart;
2026dfb205c3SBarry Smith PetscInt ncols = ii[i + 1] - ii[i];
2027dfb205c3SBarry Smith const PetscInt *icols = jj + ii[i];
2028bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2029dfb205c3SBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0);
20309566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES));
2031bb80cfbbSStefano Zampini } else { /* block ordering does not match so we can only insert one block at a time. */
2032bb80cfbbSStefano Zampini PetscInt j;
20330cd7f59aSBarry Smith for (j = 0; j < ncols; j++) {
20340cd7f59aSBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0);
20359566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPISBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES));
20360cd7f59aSBarry Smith }
20370cd7f59aSBarry Smith }
2038dfb205c3SBarry Smith }
2039dfb205c3SBarry Smith
20409566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values));
20413bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries;
20423bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE;
20439566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
20449566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
20453bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries;
20463bd0feecSPierre Jolivet
20479566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
20483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2049dfb205c3SBarry Smith }
2050dfb205c3SBarry Smith
20510bad9183SKris Buschelman /*MC
2052fafad747SKris Buschelman MATMPISBAIJ - MATMPISBAIJ = "mpisbaij" - A matrix type to be used for distributed symmetric sparse block matrices,
2053828413b8SBarry Smith based on block compressed sparse row format. Only the upper triangular portion of the "diagonal" portion of
2054828413b8SBarry Smith the matrix is stored.
2055828413b8SBarry Smith
2056828413b8SBarry Smith For complex numbers by default this matrix is symmetric, NOT Hermitian symmetric. To make it Hermitian symmetric you
205711a5261eSBarry Smith can call `MatSetOption`(`Mat`, `MAT_HERMITIAN`);
20580bad9183SKris Buschelman
20592ef1f0ffSBarry Smith Options Database Key:
206011a5261eSBarry Smith . -mat_type mpisbaij - sets the matrix type to "mpisbaij" during a call to `MatSetFromOptions()`
20610bad9183SKris Buschelman
20622ef1f0ffSBarry Smith Level: beginner
20632ef1f0ffSBarry Smith
206411a5261eSBarry Smith Note:
2065476417e5SBarry Smith The number of rows in the matrix must be less than or equal to the number of columns. Similarly the number of rows in the
2066476417e5SBarry Smith diagonal portion of the matrix of each process has to less than or equal the number of columns.
2067476417e5SBarry Smith
20681cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MATBAIJ`, `MatCreateBAIJ()`, `MATSEQSBAIJ`, `MatType`
20690bad9183SKris Buschelman M*/
20700bad9183SKris Buschelman
MatCreate_MPISBAIJ(Mat B)2071d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPISBAIJ(Mat B)
2072d71ae5a4SJacob Faibussowitsch {
2073b5df2d14SHong Zhang Mat_MPISBAIJ *b;
207494ae4db5SBarry Smith PetscBool flg = PETSC_FALSE;
2075b5df2d14SHong Zhang
2076b5df2d14SHong Zhang PetscFunctionBegin;
20774dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b));
2078b0a32e0cSBarry Smith B->data = (void *)b;
2079aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values;
2080b5df2d14SHong Zhang
2081b5df2d14SHong Zhang B->ops->destroy = MatDestroy_MPISBAIJ;
2082b5df2d14SHong Zhang B->ops->view = MatView_MPISBAIJ;
2083b5df2d14SHong Zhang B->assembled = PETSC_FALSE;
2084b5df2d14SHong Zhang B->insertmode = NOT_SET_VALUES;
208526fbe8dcSKarl Rupp
20869566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
20879566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size));
2088b5df2d14SHong Zhang
2089b5df2d14SHong Zhang /* build local table of row and column ownerships */
20909566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b->size + 2, &b->rangebs));
2091b5df2d14SHong Zhang
2092b5df2d14SHong Zhang /* build cache for off array entries formed */
20939566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
209426fbe8dcSKarl Rupp
2095b5df2d14SHong Zhang b->donotstash = PETSC_FALSE;
20960298fd71SBarry Smith b->colmap = NULL;
20970298fd71SBarry Smith b->garray = NULL;
2098b5df2d14SHong Zhang b->roworiented = PETSC_TRUE;
2099b5df2d14SHong Zhang
2100b5df2d14SHong Zhang /* stuff used in block assembly */
2101f4259b30SLisandro Dalcin b->barray = NULL;
2102b5df2d14SHong Zhang
2103b5df2d14SHong Zhang /* stuff used for matrix vector multiply */
2104f4259b30SLisandro Dalcin b->lvec = NULL;
2105f4259b30SLisandro Dalcin b->Mvctx = NULL;
2106f4259b30SLisandro Dalcin b->slvec0 = NULL;
2107f4259b30SLisandro Dalcin b->slvec0b = NULL;
2108f4259b30SLisandro Dalcin b->slvec1 = NULL;
2109f4259b30SLisandro Dalcin b->slvec1a = NULL;
2110f4259b30SLisandro Dalcin b->slvec1b = NULL;
2111f4259b30SLisandro Dalcin b->sMvctx = NULL;
2112b5df2d14SHong Zhang
2113b5df2d14SHong Zhang /* stuff for MatGetRow() */
2114f4259b30SLisandro Dalcin b->rowindices = NULL;
2115f4259b30SLisandro Dalcin b->rowvalues = NULL;
2116b5df2d14SHong Zhang b->getrowactive = PETSC_FALSE;
2117b5df2d14SHong Zhang
2118b5df2d14SHong Zhang /* hash table stuff */
2119f4259b30SLisandro Dalcin b->ht = NULL;
2120f4259b30SLisandro Dalcin b->hd = NULL;
2121b5df2d14SHong Zhang b->ht_size = 0;
2122b5df2d14SHong Zhang b->ht_flag = PETSC_FALSE;
2123b5df2d14SHong Zhang b->ht_fact = 0;
2124b5df2d14SHong Zhang b->ht_total_ct = 0;
2125b5df2d14SHong Zhang b->ht_insert_ct = 0;
2126b5df2d14SHong Zhang
21277dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
21287a868f3eSHong Zhang b->ijonly = PETSC_FALSE;
21297a868f3eSHong Zhang
2130f4259b30SLisandro Dalcin b->in_loc = NULL;
2131f4259b30SLisandro Dalcin b->v_loc = NULL;
213259ffdab8SBarry Smith b->n_loc = 0;
213394ae4db5SBarry Smith
21349566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPISBAIJ));
21359566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPISBAIJ));
21369566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocation_C", MatMPISBAIJSetPreallocation_MPISBAIJ));
21379566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPISBAIJSetPreallocationCSR_C", MatMPISBAIJSetPreallocationCSR_MPISBAIJ));
21386214f412SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
21399566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_elemental_C", MatConvert_MPISBAIJ_Elemental));
21406214f412SHong Zhang #endif
2141d1a032dbSPierre Jolivet #if defined(PETSC_HAVE_SCALAPACK) && (defined(PETSC_USE_REAL_SINGLE) || defined(PETSC_USE_REAL_DOUBLE))
21429566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_scalapack_C", MatConvert_SBAIJ_ScaLAPACK));
2143d24d4204SJose E. Roman #endif
21449566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpiaij_C", MatConvert_MPISBAIJ_Basic));
21459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpisbaij_mpibaij_C", MatConvert_MPISBAIJ_Basic));
2146aa5a9175SDahai Guo
2147b94d7dedSBarry Smith B->symmetric = PETSC_BOOL3_TRUE;
2148b94d7dedSBarry Smith B->structurally_symmetric = PETSC_BOOL3_TRUE;
2149b94d7dedSBarry Smith B->symmetry_eternal = PETSC_TRUE;
2150b94d7dedSBarry Smith B->structural_symmetry_eternal = PETSC_TRUE;
2151b0c98d1dSPierre Jolivet #if !defined(PETSC_USE_COMPLEX)
2152b94d7dedSBarry Smith B->hermitian = PETSC_BOOL3_TRUE;
2153eb1ec7c1SStefano Zampini #endif
215413647f61SHong Zhang
21559566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPISBAIJ));
2156d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPISBAIJ matrix 1", "Mat");
21579566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_use_hash_table", "Use hash table to save memory in constructing matrix", "MatSetOption", flg, &flg, NULL));
215894ae4db5SBarry Smith if (flg) {
215994ae4db5SBarry Smith PetscReal fact = 1.39;
21609566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE));
21619566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL));
216294ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39;
21639566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetHashTableFactor(B, fact));
21649566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact));
216594ae4db5SBarry Smith }
2166d0609cedSBarry Smith PetscOptionsEnd();
21673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2168b5df2d14SHong Zhang }
2169b5df2d14SHong Zhang
21702920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
2171209238afSKris Buschelman /*MC
2172002d173eSKris Buschelman MATSBAIJ - MATSBAIJ = "sbaij" - A matrix type to be used for symmetric block sparse matrices.
2173209238afSKris Buschelman
217411a5261eSBarry Smith This matrix type is identical to `MATSEQSBAIJ` when constructed with a single process communicator,
217511a5261eSBarry Smith and `MATMPISBAIJ` otherwise.
2176209238afSKris Buschelman
217711a5261eSBarry Smith Options Database Key:
2178c5dec841SPierre Jolivet . -mat_type sbaij - sets the matrix type to `MATSBAIJ` during a call to `MatSetFromOptions()`
2179209238afSKris Buschelman
2180209238afSKris Buschelman Level: beginner
2181209238afSKris Buschelman
21821cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQSBAIJ`, `MATMPISBAIJ`, `MatCreateSBAIJ()`, `MATSEQSBAIJ`, `MATMPISBAIJ`
2183209238afSKris Buschelman M*/
2184209238afSKris Buschelman
21855d83a8b1SBarry Smith /*@
2186b5df2d14SHong Zhang MatMPISBAIJSetPreallocation - For good matrix assembly performance
2187b5df2d14SHong Zhang the user should preallocate the matrix storage by setting the parameters
2188b5df2d14SHong Zhang d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately,
2189b5df2d14SHong Zhang performance can be increased by more than a factor of 50.
2190b5df2d14SHong Zhang
2191c3339decSBarry Smith Collective
2192b5df2d14SHong Zhang
2193b5df2d14SHong Zhang Input Parameters:
21941c4f3114SJed Brown + B - the matrix
2195bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2196bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2197b5df2d14SHong Zhang . d_nz - number of block nonzeros per block row in diagonal portion of local
2198b5df2d14SHong Zhang submatrix (same for all local rows)
2199b5df2d14SHong Zhang . d_nnz - array containing the number of block nonzeros in the various block rows
22006d10fdaeSSatish Balay in the upper triangular and diagonal part of the in diagonal portion of the local
22012ef1f0ffSBarry Smith (possibly different for each block row) or `NULL`. If you plan to factor the matrix you must leave room
220295742e49SBarry Smith for the diagonal entry and set a value even if it is zero.
2203b5df2d14SHong Zhang . o_nz - number of block nonzeros per block row in the off-diagonal portion of local
2204b5df2d14SHong Zhang submatrix (same for all local rows).
2205b5df2d14SHong Zhang - o_nnz - array containing the number of nonzeros in the various block rows of the
2206c2fc9fa9SBarry Smith off-diagonal portion of the local submatrix that is right of the diagonal
22072ef1f0ffSBarry Smith (possibly different for each block row) or `NULL`.
2208b5df2d14SHong Zhang
2209b5df2d14SHong Zhang Options Database Keys:
2210a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the
2211b5df2d14SHong Zhang block calculations (much slower)
2212a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use
2213b5df2d14SHong Zhang
22142ef1f0ffSBarry Smith Level: intermediate
22152ef1f0ffSBarry Smith
2216b5df2d14SHong Zhang Notes:
2217b5df2d14SHong Zhang
221811a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor
2219b5df2d14SHong Zhang than it must be used on all processors that share the object for that argument.
2220b5df2d14SHong Zhang
222149a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored
222249a6f317SBarry Smith
2223b5df2d14SHong Zhang Storage Information:
2224b5df2d14SHong Zhang For a square global matrix we define each processor's diagonal portion
2225b5df2d14SHong Zhang to be its local rows and the corresponding columns (a square submatrix);
2226b5df2d14SHong Zhang each processor's off-diagonal portion encompasses the remainder of the
2227b5df2d14SHong Zhang local matrix (a rectangular submatrix).
2228b5df2d14SHong Zhang
2229b5df2d14SHong Zhang The user can specify preallocated storage for the diagonal part of
22302ef1f0ffSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set
22312ef1f0ffSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
2232b5df2d14SHong Zhang memory allocation. Likewise, specify preallocated storage for the
22332ef1f0ffSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
2234b5df2d14SHong Zhang
223511a5261eSBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was;
2236aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
22372ef1f0ffSBarry Smith You can also run with the option `-info` and look for messages with the string
2238aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed.
2239aa95bbe8SBarry Smith
2240b5df2d14SHong Zhang Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2241b5df2d14SHong Zhang the figure below we depict these three local rows and all columns (0-11).
2242b5df2d14SHong Zhang
2243b5df2d14SHong Zhang .vb
2244b5df2d14SHong Zhang 0 1 2 3 4 5 6 7 8 9 10 11
2245a4b1a0f6SJed Brown --------------------------
2246c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o
2247c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o
2248c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o
2249a4b1a0f6SJed Brown --------------------------
2250b5df2d14SHong Zhang .ve
2251b5df2d14SHong Zhang
2252b5df2d14SHong Zhang Thus, any entries in the d locations are stored in the d (diagonal)
2253b5df2d14SHong Zhang submatrix, and any entries in the o locations are stored in the
22546d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in
225511a5261eSBarry Smith `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format.
2256b5df2d14SHong Zhang
22572ef1f0ffSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular
22586d10fdaeSSatish Balay plus the diagonal part of the d matrix,
22592ef1f0ffSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix
2260c2fc9fa9SBarry Smith
2261b5df2d14SHong Zhang In general, for PDE problems in which most nonzeros are near the diagonal,
22622ef1f0ffSBarry Smith one expects `d_nz` >> `o_nz`.
2263b5df2d14SHong Zhang
22641cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `PetscSplitOwnership()`
2265b5df2d14SHong Zhang @*/
MatMPISBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])2266d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
2267d71ae5a4SJacob Faibussowitsch {
2268b5df2d14SHong Zhang PetscFunctionBegin;
22696ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
22706ba663aaSJed Brown PetscValidType(B, 1);
22716ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2);
2272cac4c232SBarry Smith PetscTryMethod(B, "MatMPISBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz));
22733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2274b5df2d14SHong Zhang }
2275b5df2d14SHong Zhang
22762920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
22775d83a8b1SBarry Smith /*@
227811a5261eSBarry Smith MatCreateSBAIJ - Creates a sparse parallel matrix in symmetric block AIJ format, `MATSBAIJ`,
2279a30f8f8cSSatish Balay (block compressed row). For good matrix assembly performance
2280a30f8f8cSSatish Balay the user should preallocate the matrix storage by setting the parameters
228120f4b53cSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
2282a30f8f8cSSatish Balay
2283d083f849SBarry Smith Collective
2284a30f8f8cSSatish Balay
2285a30f8f8cSSatish Balay Input Parameters:
2286a30f8f8cSSatish Balay + comm - MPI communicator
228711a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
228820f4b53cSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
228920f4b53cSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if `M` is given)
2290a30f8f8cSSatish Balay This value should be the same as the local size used in creating the
2291a30f8f8cSSatish Balay y vector for the matrix-vector product y = Ax.
229220f4b53cSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if `N` is given)
2293a30f8f8cSSatish Balay This value should be the same as the local size used in creating the
2294a30f8f8cSSatish Balay x vector for the matrix-vector product y = Ax.
229520f4b53cSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
229620f4b53cSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
2297a30f8f8cSSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local
2298a30f8f8cSSatish Balay submatrix (same for all local rows)
2299a30f8f8cSSatish Balay . d_nnz - array containing the number of block nonzeros in the various block rows
23006d10fdaeSSatish Balay in the upper triangular portion of the in diagonal portion of the local
23012ef1f0ffSBarry Smith (possibly different for each block block row) or `NULL`.
230295742e49SBarry Smith If you plan to factor the matrix you must leave room for the diagonal entry and
230395742e49SBarry Smith set its value even if it is zero.
2304a30f8f8cSSatish Balay . o_nz - number of block nonzeros per block row in the off-diagonal portion of local
2305a30f8f8cSSatish Balay submatrix (same for all local rows).
2306a30f8f8cSSatish Balay - o_nnz - array containing the number of nonzeros in the various block rows of the
2307a30f8f8cSSatish Balay off-diagonal portion of the local submatrix (possibly different for
23082ef1f0ffSBarry Smith each block row) or `NULL`.
2309a30f8f8cSSatish Balay
2310a30f8f8cSSatish Balay Output Parameter:
2311a30f8f8cSSatish Balay . A - the matrix
2312a30f8f8cSSatish Balay
2313a30f8f8cSSatish Balay Options Database Keys:
2314a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the
2315a30f8f8cSSatish Balay block calculations (much slower)
2316a30f8f8cSSatish Balay . -mat_block_size - size of the blocks to use
2317a2b725a8SWilliam Gropp - -mat_mpi - use the parallel matrix data structures even on one processor
2318a30f8f8cSSatish Balay (defaults to using SeqBAIJ format on one processor)
2319a30f8f8cSSatish Balay
23202ef1f0ffSBarry Smith Level: intermediate
23212ef1f0ffSBarry Smith
23222ef1f0ffSBarry Smith Notes:
232377433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
2324f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly.
232511a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`]
2326175b88e8SBarry Smith
2327d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize.
23286d6d819aSHong Zhang This matrix type does not support complex Hermitian operation.
2329d1be2dadSMatthew Knepley
2330a30f8f8cSSatish Balay The user MUST specify either the local or global matrix dimensions
2331a30f8f8cSSatish Balay (possibly both).
2332a30f8f8cSSatish Balay
233311a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor
2334a30f8f8cSSatish Balay than it must be used on all processors that share the object for that argument.
2335a30f8f8cSSatish Balay
2336727bdf9bSBarry Smith If `m` and `n` are not `PETSC_DECIDE`, then the values determines the `PetscLayout` of the matrix and the ranges returned by
2337727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`.
2338727bdf9bSBarry Smith
233949a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored
234049a6f317SBarry Smith
2341a30f8f8cSSatish Balay Storage Information:
2342a30f8f8cSSatish Balay For a square global matrix we define each processor's diagonal portion
2343a30f8f8cSSatish Balay to be its local rows and the corresponding columns (a square submatrix);
2344a30f8f8cSSatish Balay each processor's off-diagonal portion encompasses the remainder of the
2345a30f8f8cSSatish Balay local matrix (a rectangular submatrix).
2346a30f8f8cSSatish Balay
2347a30f8f8cSSatish Balay The user can specify preallocated storage for the diagonal part of
23482ef1f0ffSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set
23492ef1f0ffSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
2350a30f8f8cSSatish Balay memory allocation. Likewise, specify preallocated storage for the
23512ef1f0ffSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
2352a30f8f8cSSatish Balay
2353a30f8f8cSSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2354a30f8f8cSSatish Balay the figure below we depict these three local rows and all columns (0-11).
2355a30f8f8cSSatish Balay
2356a30f8f8cSSatish Balay .vb
2357a30f8f8cSSatish Balay 0 1 2 3 4 5 6 7 8 9 10 11
2358a4b1a0f6SJed Brown --------------------------
2359c2fc9fa9SBarry Smith row 3 |. . . d d d o o o o o o
2360c2fc9fa9SBarry Smith row 4 |. . . d d d o o o o o o
2361c2fc9fa9SBarry Smith row 5 |. . . d d d o o o o o o
2362a4b1a0f6SJed Brown --------------------------
2363a30f8f8cSSatish Balay .ve
2364a30f8f8cSSatish Balay
2365a30f8f8cSSatish Balay Thus, any entries in the d locations are stored in the d (diagonal)
2366a30f8f8cSSatish Balay submatrix, and any entries in the o locations are stored in the
23676d10fdaeSSatish Balay o (off-diagonal) submatrix. Note that the d matrix is stored in
23682ef1f0ffSBarry Smith `MATSEQSBAIJ` format and the o submatrix in `MATSEQBAIJ` format.
2369a30f8f8cSSatish Balay
23702ef1f0ffSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the upper triangular
23716d10fdaeSSatish Balay plus the diagonal part of the d matrix,
23722ef1f0ffSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix.
2373a30f8f8cSSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal,
23742ef1f0ffSBarry Smith one expects `d_nz` >> `o_nz`.
2375a30f8f8cSSatish Balay
2376727bdf9bSBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MatCreate()`, `MatCreateSeqSBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`,
2377727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, `MatGetOwnershipRangesColumn()`, `PetscLayout`
2378a30f8f8cSSatish Balay @*/
MatCreateSBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat * A)2379d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
2380d71ae5a4SJacob Faibussowitsch {
23811302d50aSBarry Smith PetscMPIInt size;
2382a30f8f8cSSatish Balay
2383a30f8f8cSSatish Balay PetscFunctionBegin;
23849566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A));
23859566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N));
23869566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size));
2387273d9f13SBarry Smith if (size > 1) {
23889566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPISBAIJ));
23899566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz));
2390273d9f13SBarry Smith } else {
23919566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQSBAIJ));
23929566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(*A, bs, d_nz, d_nnz));
2393273d9f13SBarry Smith }
23943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2395a30f8f8cSSatish Balay }
2396a30f8f8cSSatish Balay
MatDuplicate_MPISBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat * newmat)2397d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPISBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
2398d71ae5a4SJacob Faibussowitsch {
2399a30f8f8cSSatish Balay Mat mat;
2400a30f8f8cSSatish Balay Mat_MPISBAIJ *a, *oldmat = (Mat_MPISBAIJ *)matin->data;
2401d0f46423SBarry Smith PetscInt len = 0, nt, bs = matin->rmap->bs, mbs = oldmat->mbs;
2402387bc808SHong Zhang PetscScalar *array;
2403a30f8f8cSSatish Balay
2404a30f8f8cSSatish Balay PetscFunctionBegin;
2405f4259b30SLisandro Dalcin *newmat = NULL;
240626fbe8dcSKarl Rupp
24079566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
24089566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
24099566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
24109566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
24119566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
2412e1b6402fSHong Zhang
2413420957c1SBarry Smith if (matin->hash_active) {
2414420957c1SBarry Smith PetscCall(MatSetUp(mat));
2415420957c1SBarry Smith } else {
2416d5f3da31SBarry Smith mat->factortype = matin->factortype;
2417273d9f13SBarry Smith mat->preallocated = PETSC_TRUE;
241882327fa8SHong Zhang mat->assembled = PETSC_TRUE;
24197fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES;
24207fff6886SHong Zhang
2421b5df2d14SHong Zhang a = (Mat_MPISBAIJ *)mat->data;
2422a30f8f8cSSatish Balay a->bs2 = oldmat->bs2;
2423a30f8f8cSSatish Balay a->mbs = oldmat->mbs;
2424a30f8f8cSSatish Balay a->nbs = oldmat->nbs;
2425a30f8f8cSSatish Balay a->Mbs = oldmat->Mbs;
2426a30f8f8cSSatish Balay a->Nbs = oldmat->Nbs;
2427a30f8f8cSSatish Balay
2428a30f8f8cSSatish Balay a->size = oldmat->size;
2429a30f8f8cSSatish Balay a->rank = oldmat->rank;
2430a30f8f8cSSatish Balay a->donotstash = oldmat->donotstash;
2431a30f8f8cSSatish Balay a->roworiented = oldmat->roworiented;
2432f4259b30SLisandro Dalcin a->rowindices = NULL;
2433f4259b30SLisandro Dalcin a->rowvalues = NULL;
2434a30f8f8cSSatish Balay a->getrowactive = PETSC_FALSE;
2435f4259b30SLisandro Dalcin a->barray = NULL;
2436899cda47SBarry Smith a->rstartbs = oldmat->rstartbs;
2437899cda47SBarry Smith a->rendbs = oldmat->rendbs;
2438899cda47SBarry Smith a->cstartbs = oldmat->cstartbs;
2439899cda47SBarry Smith a->cendbs = oldmat->cendbs;
2440a30f8f8cSSatish Balay
2441a30f8f8cSSatish Balay /* hash table stuff */
2442f4259b30SLisandro Dalcin a->ht = NULL;
2443f4259b30SLisandro Dalcin a->hd = NULL;
2444a30f8f8cSSatish Balay a->ht_size = 0;
2445a30f8f8cSSatish Balay a->ht_flag = oldmat->ht_flag;
2446a30f8f8cSSatish Balay a->ht_fact = oldmat->ht_fact;
2447a30f8f8cSSatish Balay a->ht_total_ct = 0;
2448a30f8f8cSSatish Balay a->ht_insert_ct = 0;
2449a30f8f8cSSatish Balay
24509566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 2));
2451a30f8f8cSSatish Balay if (oldmat->colmap) {
2452a30f8f8cSSatish Balay #if defined(PETSC_USE_CTABLE)
2453eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
2454a30f8f8cSSatish Balay #else
24559566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->Nbs, &a->colmap));
24569566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs));
2457a30f8f8cSSatish Balay #endif
2458f4259b30SLisandro Dalcin } else a->colmap = NULL;
2459387bc808SHong Zhang
2460f4f49eeaSPierre Jolivet if (oldmat->garray && (len = ((Mat_SeqBAIJ *)oldmat->B->data)->nbs)) {
24619566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len, &a->garray));
24629566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
2463f4259b30SLisandro Dalcin } else a->garray = NULL;
2464a30f8f8cSSatish Balay
24659566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash));
24669566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
24679566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx));
246882327fa8SHong Zhang
24699566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->slvec0, &a->slvec0));
24709566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->slvec1, &a->slvec1));
2471387bc808SHong Zhang
24729566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(a->slvec1, &nt));
24739566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec1, &array));
24749566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, bs * mbs, array, &a->slvec1a));
24759566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec1b));
24769566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec1, &array));
24779566063dSJacob Faibussowitsch PetscCall(VecGetArray(a->slvec0, &array));
24789566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, nt - bs * mbs, array + bs * mbs, &a->slvec0b));
24799566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(a->slvec0, &array));
2480387bc808SHong Zhang
2481387bc808SHong Zhang /* ierr = VecScatterCopy(oldmat->sMvctx,&a->sMvctx); - not written yet, replaced by the lazy trick: */
24829566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)oldmat->sMvctx));
2483387bc808SHong Zhang a->sMvctx = oldmat->sMvctx;
248482327fa8SHong Zhang
24859566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
24869566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
2487420957c1SBarry Smith }
24889566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
2489a30f8f8cSSatish Balay *newmat = mat;
24903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2491a30f8f8cSSatish Balay }
2492a30f8f8cSSatish Balay
2493618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
2494618cc2edSLisandro Dalcin #define MatLoad_MPISBAIJ_Binary MatLoad_MPIBAIJ_Binary
2495618cc2edSLisandro Dalcin
MatLoad_MPISBAIJ(Mat mat,PetscViewer viewer)24966cff0a6bSPierre Jolivet static PetscErrorCode MatLoad_MPISBAIJ(Mat mat, PetscViewer viewer)
2497d71ae5a4SJacob Faibussowitsch {
24987f489da9SVaclav Hapla PetscBool isbinary;
249995936485SShri Abhyankar
250095936485SShri Abhyankar PetscFunctionBegin;
25019566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
25025f80ce2aSJacob Faibussowitsch PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name);
25039566063dSJacob Faibussowitsch PetscCall(MatLoad_MPISBAIJ_Binary(mat, viewer));
25043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
250595936485SShri Abhyankar }
250695936485SShri Abhyankar
MatGetRowMaxAbs_MPISBAIJ(Mat A,Vec v,PetscInt idx[])2507789afff4SPierre Jolivet static PetscErrorCode MatGetRowMaxAbs_MPISBAIJ(Mat A, Vec v, PetscInt idx[])
2508d71ae5a4SJacob Faibussowitsch {
250924d5174aSHong Zhang Mat_MPISBAIJ *a = (Mat_MPISBAIJ *)A->data;
2510f4f49eeaSPierre Jolivet Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)a->B->data;
2511ca54ac64SHong Zhang PetscReal atmp;
251287828ca2SBarry Smith PetscReal *work, *svalues, *rvalues;
25131302d50aSBarry Smith PetscInt i, bs, mbs, *bi, *bj, brow, j, ncols, krow, kcol, col, row, Mbs, bcol;
25141302d50aSBarry Smith PetscMPIInt rank, size;
25156497c311SBarry Smith PetscInt *rowners_bs, count, source;
251687828ca2SBarry Smith PetscScalar *va;
25178a1c53f2SBarry Smith MatScalar *ba;
2518f4c0e9e4SHong Zhang MPI_Status stat;
251924d5174aSHong Zhang
252024d5174aSHong Zhang PetscFunctionBegin;
25215f80ce2aSJacob Faibussowitsch PetscCheck(!idx, PETSC_COMM_SELF, PETSC_ERR_SUP, "Send email to petsc-maint@mcs.anl.gov");
25229566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, v, NULL));
25239566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &va));
2524f4c0e9e4SHong Zhang
25259566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
25269566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank));
2527f4c0e9e4SHong Zhang
2528d0f46423SBarry Smith bs = A->rmap->bs;
2529f4c0e9e4SHong Zhang mbs = a->mbs;
2530f4c0e9e4SHong Zhang Mbs = a->Mbs;
2531f4c0e9e4SHong Zhang ba = b->a;
2532f4c0e9e4SHong Zhang bi = b->i;
2533f4c0e9e4SHong Zhang bj = b->j;
2534f4c0e9e4SHong Zhang
2535f4c0e9e4SHong Zhang /* find ownerships */
2536d0f46423SBarry Smith rowners_bs = A->rmap->range;
2537f4c0e9e4SHong Zhang
2538f4c0e9e4SHong Zhang /* each proc creates an array to be distributed */
25399566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(bs * Mbs, &work));
2540f4c0e9e4SHong Zhang
2541f4c0e9e4SHong Zhang /* row_max for B */
2542b8475685SHong Zhang if (rank != size - 1) {
2543f4c0e9e4SHong Zhang for (i = 0; i < mbs; i++) {
25449371c9d4SSatish Balay ncols = bi[1] - bi[0];
25459371c9d4SSatish Balay bi++;
2546f4c0e9e4SHong Zhang brow = bs * i;
2547f4c0e9e4SHong Zhang for (j = 0; j < ncols; j++) {
2548f4c0e9e4SHong Zhang bcol = bs * (*bj);
2549f4c0e9e4SHong Zhang for (kcol = 0; kcol < bs; kcol++) {
2550ca54ac64SHong Zhang col = bcol + kcol; /* local col index */
255104d41228SHong Zhang col += rowners_bs[rank + 1]; /* global col index */
2552f4c0e9e4SHong Zhang for (krow = 0; krow < bs; krow++) {
25539371c9d4SSatish Balay atmp = PetscAbsScalar(*ba);
25549371c9d4SSatish Balay ba++;
2555ca54ac64SHong Zhang row = brow + krow; /* local row index */
2556ca54ac64SHong Zhang if (PetscRealPart(va[row]) < atmp) va[row] = atmp;
2557f4c0e9e4SHong Zhang if (work[col] < atmp) work[col] = atmp;
2558f4c0e9e4SHong Zhang }
2559f4c0e9e4SHong Zhang }
2560f4c0e9e4SHong Zhang bj++;
2561f4c0e9e4SHong Zhang }
2562f4c0e9e4SHong Zhang }
2563f4c0e9e4SHong Zhang
2564f4c0e9e4SHong Zhang /* send values to its owners */
25656497c311SBarry Smith for (PetscMPIInt dest = rank + 1; dest < size; dest++) {
2566f4c0e9e4SHong Zhang svalues = work + rowners_bs[dest];
2567ca54ac64SHong Zhang count = rowners_bs[dest + 1] - rowners_bs[dest];
25686497c311SBarry Smith PetscCallMPI(MPIU_Send(svalues, count, MPIU_REAL, dest, rank, PetscObjectComm((PetscObject)A)));
2569ca54ac64SHong Zhang }
2570f4c0e9e4SHong Zhang }
2571f4c0e9e4SHong Zhang
2572f4c0e9e4SHong Zhang /* receive values */
2573ca54ac64SHong Zhang if (rank) {
2574f4c0e9e4SHong Zhang rvalues = work;
2575ca54ac64SHong Zhang count = rowners_bs[rank + 1] - rowners_bs[rank];
2576f4c0e9e4SHong Zhang for (source = 0; source < rank; source++) {
25776497c311SBarry Smith PetscCallMPI(MPIU_Recv(rvalues, count, MPIU_REAL, MPI_ANY_SOURCE, MPI_ANY_TAG, PetscObjectComm((PetscObject)A), &stat));
2578f4c0e9e4SHong Zhang /* process values */
2579f4c0e9e4SHong Zhang for (i = 0; i < count; i++) {
2580ca54ac64SHong Zhang if (PetscRealPart(va[i]) < rvalues[i]) va[i] = rvalues[i];
2581f4c0e9e4SHong Zhang }
2582f4c0e9e4SHong Zhang }
2583ca54ac64SHong Zhang }
2584f4c0e9e4SHong Zhang
25859566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &va));
25869566063dSJacob Faibussowitsch PetscCall(PetscFree(work));
25873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
258824d5174aSHong Zhang }
25892798e883SHong Zhang
MatSOR_MPISBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)2590789afff4SPierre Jolivet static PetscErrorCode MatSOR_MPISBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
2591d71ae5a4SJacob Faibussowitsch {
25922798e883SHong Zhang Mat_MPISBAIJ *mat = (Mat_MPISBAIJ *)matin->data;
2593d0f46423SBarry Smith PetscInt mbs = mat->mbs, bs = matin->rmap->bs;
25943649974fSBarry Smith PetscScalar *x, *ptr, *from;
2595ffe4fb16SHong Zhang Vec bb1;
25963649974fSBarry Smith const PetscScalar *b;
2597ffe4fb16SHong Zhang
2598ffe4fb16SHong Zhang PetscFunctionBegin;
25995f80ce2aSJacob Faibussowitsch PetscCheck(its > 0 && lits > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Relaxation requires global its %" PetscInt_FMT " and local its %" PetscInt_FMT " both positive", its, lits);
26005f80ce2aSJacob Faibussowitsch PetscCheck(bs <= 1, PETSC_COMM_SELF, PETSC_ERR_SUP, "SSOR for block size > 1 is not yet implemented");
2601ffe4fb16SHong Zhang
2602a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) {
26039566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
26043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2605a2b30743SBarry Smith }
2606a2b30743SBarry Smith
2607ffe4fb16SHong Zhang if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2608ffe4fb16SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) {
26099566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, lits, xx));
2610ffe4fb16SHong Zhang its--;
2611ffe4fb16SHong Zhang }
2612ffe4fb16SHong Zhang
26139566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &bb1));
2614ffe4fb16SHong Zhang while (its--) {
2615ffe4fb16SHong Zhang /* lower triangular part: slvec0b = - B^T*xx */
26169566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b));
2617ffe4fb16SHong Zhang
2618ffe4fb16SHong Zhang /* copy xx into slvec0a */
26199566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec0, &ptr));
26209566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x));
26219566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ptr, x, bs * mbs));
26229566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec0, &ptr));
2623ffe4fb16SHong Zhang
26249566063dSJacob Faibussowitsch PetscCall(VecScale(mat->slvec0, -1.0));
2625ffe4fb16SHong Zhang
2626ffe4fb16SHong Zhang /* copy bb into slvec1a */
26279566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec1, &ptr));
26289566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb, &b));
26299566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ptr, b, bs * mbs));
26309566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec1, &ptr));
2631ffe4fb16SHong Zhang
2632ffe4fb16SHong Zhang /* set slvec1b = 0 */
2633629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b));
2634629a200eSBarry Smith PetscCall(VecZeroEntries(mat->slvec1b));
2635ffe4fb16SHong Zhang
26369566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
26379566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x));
26389566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb, &b));
26399566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
2640ffe4fb16SHong Zhang
2641ffe4fb16SHong Zhang /* upper triangular part: bb1 = bb1 - B*x */
26429566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, bb1));
2643ffe4fb16SHong Zhang
2644ffe4fb16SHong Zhang /* local diagonal sweep */
26459566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, lits, xx));
2646ffe4fb16SHong Zhang }
26479566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1));
2648fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_FORWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
26499566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2650fa22f6d0SBarry Smith } else if ((flag & SOR_LOCAL_BACKWARD_SWEEP) && (its == 1) && (flag & SOR_ZERO_INITIAL_GUESS)) {
26519566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2652fa22f6d0SBarry Smith } else if (flag & SOR_EISENSTAT) {
2653fa22f6d0SBarry Smith Vec xx1;
2654ace3abfcSBarry Smith PetscBool hasop;
265520f1ed55SBarry Smith const PetscScalar *diag;
2656887ee2caSBarry Smith PetscScalar *sl, scale = (omega - 2.0) / omega;
265720f1ed55SBarry Smith PetscInt i, n;
2658fa22f6d0SBarry Smith
2659fa22f6d0SBarry Smith if (!mat->xx1) {
26609566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &mat->xx1));
26619566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &mat->bb1));
2662fa22f6d0SBarry Smith }
2663fa22f6d0SBarry Smith xx1 = mat->xx1;
2664fa22f6d0SBarry Smith bb1 = mat->bb1;
2665fa22f6d0SBarry Smith
26669566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx));
2667fa22f6d0SBarry Smith
2668fa22f6d0SBarry Smith if (!mat->diag) {
2669effcda25SBarry Smith /* this is wrong for same matrix with new nonzero values */
26709566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(matin, &mat->diag, NULL));
26719566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(matin, mat->diag));
2672fa22f6d0SBarry Smith }
26739566063dSJacob Faibussowitsch PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop));
2674fa22f6d0SBarry Smith
2675fa22f6d0SBarry Smith if (hasop) {
26769566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(matin, xx, bb1));
26779566063dSJacob Faibussowitsch PetscCall(VecAYPX(mat->slvec1a, scale, bb));
267820f1ed55SBarry Smith } else {
267920f1ed55SBarry Smith /*
268020f1ed55SBarry Smith These two lines are replaced by code that may be a bit faster for a good compiler
26819566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(mat->slvec1a,mat->diag,xx));
26829566063dSJacob Faibussowitsch PetscCall(VecAYPX(mat->slvec1a,scale,bb));
268320f1ed55SBarry Smith */
26849566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec1a, &sl));
26859566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(mat->diag, &diag));
26869566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb, &b));
26879566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x));
26889566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &n));
2689887ee2caSBarry Smith if (omega == 1.0) {
269026fbe8dcSKarl Rupp for (i = 0; i < n; i++) sl[i] = b[i] - diag[i] * x[i];
26919566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * n));
2692887ee2caSBarry Smith } else {
269326fbe8dcSKarl Rupp for (i = 0; i < n; i++) sl[i] = b[i] + scale * diag[i] * x[i];
26949566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(3.0 * n));
2695887ee2caSBarry Smith }
26969566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec1a, &sl));
26979566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(mat->diag, &diag));
26989566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb, &b));
26999566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x));
270020f1ed55SBarry Smith }
2701fa22f6d0SBarry Smith
2702fa22f6d0SBarry Smith /* multiply off-diagonal portion of matrix */
2703629a200eSBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat->slvec1b));
2704629a200eSBarry Smith PetscCall(VecZeroEntries(mat->slvec1b));
27059566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multtranspose)(mat->B, xx, mat->slvec0b));
27069566063dSJacob Faibussowitsch PetscCall(VecGetArray(mat->slvec0, &from));
27079566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x));
27089566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(from, x, bs * mbs));
27099566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mat->slvec0, &from));
27109566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x));
27119566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
27129566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->sMvctx, mat->slvec0, mat->slvec1, ADD_VALUES, SCATTER_FORWARD));
27139566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->slvec1b, mat->slvec1a, mat->slvec1a));
2714fa22f6d0SBarry Smith
2715fa22f6d0SBarry Smith /* local sweep */
27169566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, mat->slvec1a, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1));
27179566063dSJacob Faibussowitsch PetscCall(VecAXPY(xx, 1.0, xx1));
2718f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatSORType is not supported for SBAIJ matrix format");
27193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2720ffe4fb16SHong Zhang }
2721ffe4fb16SHong Zhang
2722dfb205c3SBarry Smith /*@
2723d8a51d2aSBarry Smith MatCreateMPISBAIJWithArrays - creates a `MATMPISBAIJ` matrix using arrays that contain in standard CSR format for the local rows.
2724dfb205c3SBarry Smith
2725d083f849SBarry Smith Collective
2726dfb205c3SBarry Smith
2727dfb205c3SBarry Smith Input Parameters:
2728dfb205c3SBarry Smith + comm - MPI communicator
2729dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported
273011a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`)
2731dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the
2732d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax $. (or `PETSC_DECIDE` to have
27332ef1f0ffSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`.
27342ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
27352ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
2736483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that row block row of the matrix
2737dfb205c3SBarry Smith . j - column indices
2738dfb205c3SBarry Smith - a - matrix values
2739dfb205c3SBarry Smith
2740dfb205c3SBarry Smith Output Parameter:
2741dfb205c3SBarry Smith . mat - the matrix
2742dfb205c3SBarry Smith
2743dfb205c3SBarry Smith Level: intermediate
2744dfb205c3SBarry Smith
2745dfb205c3SBarry Smith Notes:
27462ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
27472ef1f0ffSBarry Smith thus you CANNOT change the matrix entries by changing the values of `a` after you have
27482ef1f0ffSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
2749dfb205c3SBarry Smith
27502ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
2751dfb205c3SBarry Smith
27521cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
2753d8a51d2aSBarry Smith `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatMPISBAIJSetPreallocationCSR()`
2754dfb205c3SBarry Smith @*/
MatCreateMPISBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat * mat)2755d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPISBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
2756d71ae5a4SJacob Faibussowitsch {
2757dfb205c3SBarry Smith PetscFunctionBegin;
27585f80ce2aSJacob Faibussowitsch PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
27595f80ce2aSJacob Faibussowitsch PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
27609566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat));
27619566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N));
27629566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPISBAIJ));
27639566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocationCSR(*mat, bs, i, j, a));
27643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2765dfb205c3SBarry Smith }
2766dfb205c3SBarry Smith
27675d83a8b1SBarry Smith /*@
276811a5261eSBarry Smith MatMPISBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATMPISBAIJ` format using the given nonzero structure and (optional) numerical values
2769dfb205c3SBarry Smith
2770d083f849SBarry Smith Collective
2771dfb205c3SBarry Smith
2772dfb205c3SBarry Smith Input Parameters:
27731c4f3114SJed Brown + B - the matrix
2774dfb205c3SBarry Smith . bs - the block size
2775d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero)
2776d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero) these must be sorted for each row
2777d8a51d2aSBarry Smith - v - optional values in the matrix, pass `NULL` if not provided
2778dfb205c3SBarry Smith
2779664954b6SBarry Smith Level: advanced
2780664954b6SBarry Smith
2781664954b6SBarry Smith Notes:
2782d8a51d2aSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc;
2783d8a51d2aSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have
2784d8a51d2aSBarry Smith called this routine.
2785d8a51d2aSBarry Smith
27860cd7f59aSBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries
27870cd7f59aSBarry Smith and usually the numerical values as well
27880cd7f59aSBarry Smith
2789d8a51d2aSBarry Smith Any entries passed in that are below the diagonal are ignored
2790dfb205c3SBarry Smith
2791d8a51d2aSBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPISBAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`,
2792d8a51d2aSBarry Smith `MatCreateMPISBAIJWithArrays()`
2793dfb205c3SBarry Smith @*/
MatMPISBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[],const PetscScalar v[])2794d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPISBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
2795d71ae5a4SJacob Faibussowitsch {
2796dfb205c3SBarry Smith PetscFunctionBegin;
2797cac4c232SBarry Smith PetscTryMethod(B, "MatMPISBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v));
27983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2799dfb205c3SBarry Smith }
2800dfb205c3SBarry Smith
MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat * outmat)2801d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPISBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
2802d71ae5a4SJacob Faibussowitsch {
280310c56fdeSHong Zhang PetscInt m, N, i, rstart, nnz, Ii, bs, cbs;
280410c56fdeSHong Zhang PetscInt *indx;
280510c56fdeSHong Zhang PetscScalar *values;
2806dfb205c3SBarry Smith
28074dcd73b1SHong Zhang PetscFunctionBegin;
28089566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N));
280910c56fdeSHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
281010c56fdeSHong Zhang Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ *)inmat->data;
2811de25e9cbSPierre Jolivet PetscInt *dnz, *onz, mbs, Nbs, nbs;
281210c56fdeSHong Zhang PetscInt *bindx, rmax = a->rmax, j;
2813de25e9cbSPierre Jolivet PetscMPIInt rank, size;
28144dcd73b1SHong Zhang
28159566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
28169371c9d4SSatish Balay mbs = m / bs;
28179371c9d4SSatish Balay Nbs = N / cbs;
281848a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N));
2819da91a574SPierre Jolivet nbs = n / cbs;
28204dcd73b1SHong Zhang
28219566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rmax, &bindx));
2822d0609cedSBarry Smith MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */
2823de25e9cbSPierre Jolivet
28249566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank));
2825*badd099fSHan Liu PetscCallMPI(MPI_Comm_size(comm, &size));
2826de25e9cbSPierre Jolivet if (rank == size - 1) {
2827de25e9cbSPierre Jolivet /* Check sum(nbs) = Nbs */
28285f80ce2aSJacob Faibussowitsch PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs);
2829de25e9cbSPierre Jolivet }
2830de25e9cbSPierre Jolivet
2831d0609cedSBarry Smith rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */
28329566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE));
283310c56fdeSHong Zhang for (i = 0; i < mbs; i++) {
28349566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */
28354dcd73b1SHong Zhang nnz = nnz / bs;
28364dcd73b1SHong Zhang for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs;
28379566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz));
28389566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i * bs, &nnz, &indx, NULL));
28394dcd73b1SHong Zhang }
28409566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE));
28419566063dSJacob Faibussowitsch PetscCall(PetscFree(bindx));
28424dcd73b1SHong Zhang
28439566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat));
28449566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
28459566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
28469566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, MATSBAIJ));
28479566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(*outmat, bs, 0, dnz));
28489566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz));
2849d0609cedSBarry Smith MatPreallocateEnd(dnz, onz);
28504dcd73b1SHong Zhang }
28514dcd73b1SHong Zhang
285210c56fdeSHong Zhang /* numeric phase */
28539566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
28549566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
28554dcd73b1SHong Zhang
28569566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_TRUE));
28574dcd73b1SHong Zhang for (i = 0; i < m; i++) {
28589566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values));
28594dcd73b1SHong Zhang Ii = i + rstart;
28609566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
28619566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqSBAIJ(inmat, i, &nnz, &indx, &values));
28624dcd73b1SHong Zhang }
28639566063dSJacob Faibussowitsch PetscCall(MatSetOption(inmat, MAT_GETROW_UPPERTRIANGULAR, PETSC_FALSE));
28649566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
28659566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
28663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
28674dcd73b1SHong Zhang }
2868