1 2 #include <../src/mat/impls/sbaij/seq/sbaij.h> 3 #include <petsc/private/kernels/blockinvert.h> 4 5 /* 6 Version for when blocks are 5 by 5 Using natural ordering 7 */ 8 #undef __FUNCT__ 9 #define __FUNCT__ "MatCholeskyFactorNumeric_SeqSBAIJ_5_NaturalOrdering" 10 PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_5_NaturalOrdering(Mat C,Mat A,const MatFactorInfo *info) 11 { 12 Mat_SeqSBAIJ *a = (Mat_SeqSBAIJ*)A->data,*b = (Mat_SeqSBAIJ*)C->data; 13 PetscErrorCode ierr; 14 PetscInt i,j,mbs=a->mbs,*bi=b->i,*bj=b->j; 15 PetscInt *ai,*aj,k,k1,jmin,jmax,*jl,*il,vj,nexti,ili,ipvt[5]; 16 MatScalar *ba = b->a,*aa,*ap,*dk,*uik; 17 MatScalar *u,*d,*rtmp,*rtmp_ptr,work[25]; 18 PetscReal shift = info->shiftamount; 19 20 PetscFunctionBegin; 21 /* initialization */ 22 ierr = PetscCalloc1(25*mbs,&rtmp);CHKERRQ(ierr); 23 ierr = PetscMalloc2(mbs,&il,mbs,&jl);CHKERRQ(ierr); 24 for (i=0; i<mbs; i++) { 25 jl[i] = mbs; il[0] = 0; 26 } 27 ierr = PetscMalloc2(25,&dk,25,&uik);CHKERRQ(ierr); 28 ai = a->i; aj = a->j; aa = a->a; 29 30 /* for each row k */ 31 for (k = 0; k<mbs; k++) { 32 33 /*initialize k-th row with elements nonzero in row k of A */ 34 jmin = ai[k]; jmax = ai[k+1]; 35 if (jmin < jmax) { 36 ap = aa + jmin*25; 37 for (j = jmin; j < jmax; j++) { 38 vj = aj[j]; /* block col. index */ 39 rtmp_ptr = rtmp + vj*25; 40 for (i=0; i<25; i++) *rtmp_ptr++ = *ap++; 41 } 42 } 43 44 /* modify k-th row by adding in those rows i with U(i,k) != 0 */ 45 ierr = PetscMemcpy(dk,rtmp+k*25,25*sizeof(MatScalar));CHKERRQ(ierr); 46 i = jl[k]; /* first row to be added to k_th row */ 47 48 while (i < mbs) { 49 nexti = jl[i]; /* next row to be added to k_th row */ 50 51 /* compute multiplier */ 52 ili = il[i]; /* index of first nonzero element in U(i,k:bms-1) */ 53 54 /* uik = -inv(Di)*U_bar(i,k) */ 55 d = ba + i*25; 56 u = ba + ili*25; 57 58 uik[0] = -(d[0]*u[0] + d[5]*u[1] + d[10]*u[2] + d[15]*u[3] + d[20]*u[4]); 59 uik[1] = -(d[1]*u[0] + d[6]*u[1] + d[11]*u[2] + d[16]*u[3] + d[21]*u[4]); 60 uik[2] = -(d[2]*u[0] + d[7]*u[1] + d[12]*u[2] + d[17]*u[3] + d[22]*u[4]); 61 uik[3] = -(d[3]*u[0] + d[8]*u[1] + d[13]*u[2] + d[18]*u[3] + d[23]*u[4]); 62 uik[4] = -(d[4]*u[0] + d[9]*u[1] + d[14]*u[2] + d[19]*u[3] + d[24]*u[4]); 63 64 uik[5] = -(d[0]*u[5] + d[5]*u[6] + d[10]*u[7] + d[15]*u[8] + d[20]*u[9]); 65 uik[6] = -(d[1]*u[5] + d[6]*u[6] + d[11]*u[7] + d[16]*u[8] + d[21]*u[9]); 66 uik[7] = -(d[2]*u[5] + d[7]*u[6] + d[12]*u[7] + d[17]*u[8] + d[22]*u[9]); 67 uik[8] = -(d[3]*u[5] + d[8]*u[6] + d[13]*u[7] + d[18]*u[8] + d[23]*u[9]); 68 uik[9] = -(d[4]*u[5] + d[9]*u[6] + d[14]*u[7] + d[19]*u[8] + d[24]*u[9]); 69 70 uik[10]= -(d[0]*u[10] + d[5]*u[11] + d[10]*u[12] + d[15]*u[13] + d[20]*u[14]); 71 uik[11]= -(d[1]*u[10] + d[6]*u[11] + d[11]*u[12] + d[16]*u[13] + d[21]*u[14]); 72 uik[12]= -(d[2]*u[10] + d[7]*u[11] + d[12]*u[12] + d[17]*u[13] + d[22]*u[14]); 73 uik[13]= -(d[3]*u[10] + d[8]*u[11] + d[13]*u[12] + d[18]*u[13] + d[23]*u[14]); 74 uik[14]= -(d[4]*u[10] + d[9]*u[11] + d[14]*u[12] + d[19]*u[13] + d[24]*u[14]); 75 76 uik[15]= -(d[0]*u[15] + d[5]*u[16] + d[10]*u[17] + d[15]*u[18] + d[20]*u[19]); 77 uik[16]= -(d[1]*u[15] + d[6]*u[16] + d[11]*u[17] + d[16]*u[18] + d[21]*u[19]); 78 uik[17]= -(d[2]*u[15] + d[7]*u[16] + d[12]*u[17] + d[17]*u[18] + d[22]*u[19]); 79 uik[18]= -(d[3]*u[15] + d[8]*u[16] + d[13]*u[17] + d[18]*u[18] + d[23]*u[19]); 80 uik[19]= -(d[4]*u[15] + d[9]*u[16] + d[14]*u[17] + d[19]*u[18] + d[24]*u[19]); 81 82 uik[20]= -(d[0]*u[20] + d[5]*u[21] + d[10]*u[22] + d[15]*u[23] + d[20]*u[24]); 83 uik[21]= -(d[1]*u[20] + d[6]*u[21] + d[11]*u[22] + d[16]*u[23] + d[21]*u[24]); 84 uik[22]= -(d[2]*u[20] + d[7]*u[21] + d[12]*u[22] + d[17]*u[23] + d[22]*u[24]); 85 uik[23]= -(d[3]*u[20] + d[8]*u[21] + d[13]*u[22] + d[18]*u[23] + d[23]*u[24]); 86 uik[24]= -(d[4]*u[20] + d[9]*u[21] + d[14]*u[22] + d[19]*u[23] + d[24]*u[24]); 87 88 89 /* update D(k) += -U(i,k)^T * U_bar(i,k) */ 90 dk[0] += uik[0]*u[0] + uik[1]*u[1] + uik[2]*u[2] + uik[3]*u[3] + uik[4]*u[4]; 91 dk[1] += uik[5]*u[0] + uik[6]*u[1] + uik[7]*u[2] + uik[8]*u[3] + uik[9]*u[4]; 92 dk[2] += uik[10]*u[0]+ uik[11]*u[1]+ uik[12]*u[2]+ uik[13]*u[3]+ uik[14]*u[4]; 93 dk[3] += uik[15]*u[0]+ uik[16]*u[1]+ uik[17]*u[2]+ uik[18]*u[3]+ uik[19]*u[4]; 94 dk[4] += uik[20]*u[0]+ uik[21]*u[1]+ uik[22]*u[2]+ uik[23]*u[3]+ uik[24]*u[4]; 95 96 dk[5] += uik[0]*u[5] + uik[1]*u[6] + uik[2]*u[7] + uik[3]*u[8] + uik[4]*u[9]; 97 dk[6] += uik[5]*u[5] + uik[6]*u[6] + uik[7]*u[7] + uik[8]*u[8] + uik[9]*u[9]; 98 dk[7] += uik[10]*u[5]+ uik[11]*u[6]+ uik[12]*u[7]+ uik[13]*u[8]+ uik[14]*u[9]; 99 dk[8] += uik[15]*u[5]+ uik[16]*u[6]+ uik[17]*u[7]+ uik[18]*u[8]+ uik[19]*u[9]; 100 dk[9] += uik[20]*u[5]+ uik[21]*u[6]+ uik[22]*u[7]+ uik[23]*u[8]+ uik[24]*u[9]; 101 102 dk[10] += uik[0]*u[10] + uik[1]*u[11] + uik[2]*u[12] + uik[3]*u[13] + uik[4]*u[14]; 103 dk[11] += uik[5]*u[10] + uik[6]*u[11] + uik[7]*u[12] + uik[8]*u[13] + uik[9]*u[14]; 104 dk[12] += uik[10]*u[10]+ uik[11]*u[11]+ uik[12]*u[12]+ uik[13]*u[13]+ uik[14]*u[14]; 105 dk[13] += uik[15]*u[10]+ uik[16]*u[11]+ uik[17]*u[12]+ uik[18]*u[13]+ uik[19]*u[14]; 106 dk[14] += uik[20]*u[10]+ uik[21]*u[11]+ uik[22]*u[12]+ uik[23]*u[13]+ uik[24]*u[14]; 107 108 dk[15] += uik[0]*u[15] + uik[1]*u[16] + uik[2]*u[17] + uik[3]*u[18] + uik[4]*u[19]; 109 dk[16] += uik[5]*u[15] + uik[6]*u[16] + uik[7]*u[17] + uik[8]*u[18] + uik[9]*u[19]; 110 dk[17] += uik[10]*u[15]+ uik[11]*u[16]+ uik[12]*u[17]+ uik[13]*u[18]+ uik[14]*u[19]; 111 dk[18] += uik[15]*u[15]+ uik[16]*u[16]+ uik[17]*u[17]+ uik[18]*u[18]+ uik[19]*u[19]; 112 dk[19] += uik[20]*u[15]+ uik[21]*u[16]+ uik[22]*u[17]+ uik[23]*u[18]+ uik[24]*u[19]; 113 114 dk[20] += uik[0]*u[20] + uik[1]*u[21] + uik[2]*u[22] + uik[3]*u[23] + uik[4]*u[24]; 115 dk[21] += uik[5]*u[20] + uik[6]*u[21] + uik[7]*u[22] + uik[8]*u[23] + uik[9]*u[24]; 116 dk[22] += uik[10]*u[20]+ uik[11]*u[21]+ uik[12]*u[22]+ uik[13]*u[23]+ uik[14]*u[24]; 117 dk[23] += uik[15]*u[20]+ uik[16]*u[21]+ uik[17]*u[22]+ uik[18]*u[23]+ uik[19]*u[24]; 118 dk[24] += uik[20]*u[20]+ uik[21]*u[21]+ uik[22]*u[22]+ uik[23]*u[23]+ uik[24]*u[24]; 119 120 ierr = PetscLogFlops(125.0*4.0);CHKERRQ(ierr); 121 122 /* update -U(i,k) */ 123 ierr = PetscMemcpy(ba+ili*25,uik,25*sizeof(MatScalar));CHKERRQ(ierr); 124 125 /* add multiple of row i to k-th row ... */ 126 jmin = ili + 1; jmax = bi[i+1]; 127 if (jmin < jmax) { 128 for (j=jmin; j<jmax; j++) { 129 /* rtmp += -U(i,k)^T * U_bar(i,j) */ 130 rtmp_ptr = rtmp + bj[j]*25; 131 u = ba + j*25; 132 rtmp_ptr[0] += uik[0]*u[0] + uik[1]*u[1] + uik[2]*u[2] + uik[3]*u[3] + uik[4]*u[4]; 133 rtmp_ptr[1] += uik[5]*u[0] + uik[6]*u[1] + uik[7]*u[2] + uik[8]*u[3] + uik[9]*u[4]; 134 rtmp_ptr[2] += uik[10]*u[0]+ uik[11]*u[1]+ uik[12]*u[2]+ uik[13]*u[3]+ uik[14]*u[4]; 135 rtmp_ptr[3] += uik[15]*u[0]+ uik[16]*u[1]+ uik[17]*u[2]+ uik[18]*u[3]+ uik[19]*u[4]; 136 rtmp_ptr[4] += uik[20]*u[0]+ uik[21]*u[1]+ uik[22]*u[2]+ uik[23]*u[3]+ uik[24]*u[4]; 137 138 rtmp_ptr[5] += uik[0]*u[5] + uik[1]*u[6] + uik[2]*u[7] + uik[3]*u[8] + uik[4]*u[9]; 139 rtmp_ptr[6] += uik[5]*u[5] + uik[6]*u[6] + uik[7]*u[7] + uik[8]*u[8] + uik[9]*u[9]; 140 rtmp_ptr[7] += uik[10]*u[5]+ uik[11]*u[6]+ uik[12]*u[7]+ uik[13]*u[8]+ uik[14]*u[9]; 141 rtmp_ptr[8] += uik[15]*u[5]+ uik[16]*u[6]+ uik[17]*u[7]+ uik[18]*u[8]+ uik[19]*u[9]; 142 rtmp_ptr[9] += uik[20]*u[5]+ uik[21]*u[6]+ uik[22]*u[7]+ uik[23]*u[8]+ uik[24]*u[9]; 143 144 rtmp_ptr[10] += uik[0]*u[10] + uik[1]*u[11] + uik[2]*u[12] + uik[3]*u[13] + uik[4]*u[14]; 145 rtmp_ptr[11] += uik[5]*u[10] + uik[6]*u[11] + uik[7]*u[12] + uik[8]*u[13] + uik[9]*u[14]; 146 rtmp_ptr[12] += uik[10]*u[10]+ uik[11]*u[11]+ uik[12]*u[12]+ uik[13]*u[13]+ uik[14]*u[14]; 147 rtmp_ptr[13] += uik[15]*u[10]+ uik[16]*u[11]+ uik[17]*u[12]+ uik[18]*u[13]+ uik[19]*u[14]; 148 rtmp_ptr[14] += uik[20]*u[10]+ uik[21]*u[11]+ uik[22]*u[12]+ uik[23]*u[13]+ uik[24]*u[14]; 149 150 rtmp_ptr[15] += uik[0]*u[15] + uik[1]*u[16] + uik[2]*u[17] + uik[3]*u[18] + uik[4]*u[19]; 151 rtmp_ptr[16] += uik[5]*u[15] + uik[6]*u[16] + uik[7]*u[17] + uik[8]*u[18] + uik[9]*u[19]; 152 rtmp_ptr[17] += uik[10]*u[15]+ uik[11]*u[16]+ uik[12]*u[17]+ uik[13]*u[18]+ uik[14]*u[19]; 153 rtmp_ptr[18] += uik[15]*u[15]+ uik[16]*u[16]+ uik[17]*u[17]+ uik[18]*u[18]+ uik[19]*u[19]; 154 rtmp_ptr[19] += uik[20]*u[15]+ uik[21]*u[16]+ uik[22]*u[17]+ uik[23]*u[18]+ uik[24]*u[19]; 155 156 rtmp_ptr[20] += uik[0]*u[20] + uik[1]*u[21] + uik[2]*u[22] + uik[3]*u[23] + uik[4]*u[24]; 157 rtmp_ptr[21] += uik[5]*u[20] + uik[6]*u[21] + uik[7]*u[22] + uik[8]*u[23] + uik[9]*u[24]; 158 rtmp_ptr[22] += uik[10]*u[20]+ uik[11]*u[21]+ uik[12]*u[22]+ uik[13]*u[23]+ uik[14]*u[24]; 159 rtmp_ptr[23] += uik[15]*u[20]+ uik[16]*u[21]+ uik[17]*u[22]+ uik[18]*u[23]+ uik[19]*u[24]; 160 rtmp_ptr[24] += uik[20]*u[20]+ uik[21]*u[21]+ uik[22]*u[22]+ uik[23]*u[23]+ uik[24]*u[24]; 161 } 162 ierr = PetscLogFlops(2.0*125.0*(jmax-jmin));CHKERRQ(ierr); 163 164 /* ... add i to row list for next nonzero entry */ 165 il[i] = jmin; /* update il(i) in column k+1, ... mbs-1 */ 166 j = bj[jmin]; 167 jl[i] = jl[j]; jl[j] = i; /* update jl */ 168 } 169 i = nexti; 170 } 171 172 /* save nonzero entries in k-th row of U ... */ 173 174 /* invert diagonal block */ 175 d = ba+k*25; 176 ierr = PetscMemcpy(d,dk,25*sizeof(MatScalar));CHKERRQ(ierr); 177 ierr = PetscKernel_A_gets_inverse_A_5(d,ipvt,work,shift);CHKERRQ(ierr); 178 179 jmin = bi[k]; jmax = bi[k+1]; 180 if (jmin < jmax) { 181 for (j=jmin; j<jmax; j++) { 182 vj = bj[j]; /* block col. index of U */ 183 u = ba + j*25; 184 rtmp_ptr = rtmp + vj*25; 185 for (k1=0; k1<25; k1++) { 186 *u++ = *rtmp_ptr; 187 *rtmp_ptr++ = 0.0; 188 } 189 } 190 191 /* ... add k to row list for first nonzero entry in k-th row */ 192 il[k] = jmin; 193 i = bj[jmin]; 194 jl[k] = jl[i]; jl[i] = k; 195 } 196 } 197 198 ierr = PetscFree(rtmp);CHKERRQ(ierr); 199 ierr = PetscFree2(il,jl);CHKERRQ(ierr); 200 ierr = PetscFree2(dk,uik);CHKERRQ(ierr); 201 202 C->ops->solve = MatSolve_SeqSBAIJ_5_NaturalOrdering_inplace; 203 C->ops->solvetranspose = MatSolve_SeqSBAIJ_5_NaturalOrdering_inplace; 204 C->ops->forwardsolve = MatForwardSolve_SeqSBAIJ_5_NaturalOrdering_inplace; 205 C->ops->backwardsolve = MatBackwardSolve_SeqSBAIJ_5_NaturalOrdering_inplace; 206 C->assembled = PETSC_TRUE; 207 C->preallocated = PETSC_TRUE; 208 209 ierr = PetscLogFlops(1.3333*125*b->mbs);CHKERRQ(ierr); /* from inverting diagonal blocks */ 210 PetscFunctionReturn(0); 211 } 212