xref: /petsc/src/mat/impls/sell/seq/sell.c (revision 27f169480a6668db3ba90f8ef6ef68d542d113fa)
1d4002b98SHong Zhang /*
2d4002b98SHong Zhang   Defines the basic matrix operations for the SELL matrix storage format.
3d4002b98SHong Zhang */
4d4002b98SHong Zhang #include <../src/mat/impls/sell/seq/sell.h> /*I   "petscmat.h"  I*/
5d4002b98SHong Zhang #include <petscblaslapack.h>
6d4002b98SHong Zhang #include <petsc/private/kernels/blocktranspose.h>
7ed73aabaSBarry Smith 
8ed73aabaSBarry Smith static PetscBool  cited      = PETSC_FALSE;
99371c9d4SSatish Balay static const char citation[] = "@inproceedings{ZhangELLPACK2018,\n"
10ed73aabaSBarry Smith                                " author = {Hong Zhang and Richard T. Mills and Karl Rupp and Barry F. Smith},\n"
11ed73aabaSBarry Smith                                " title = {Vectorized Parallel Sparse Matrix-Vector Multiplication in {PETSc} Using {AVX-512}},\n"
12ed73aabaSBarry Smith                                " booktitle = {Proceedings of the 47th International Conference on Parallel Processing},\n"
13ed73aabaSBarry Smith                                " year = 2018\n"
14ed73aabaSBarry Smith                                "}\n";
15ed73aabaSBarry Smith 
165f70456aSHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && (defined(__AVX512F__) || (defined(__AVX2__) && defined(__FMA__)) || defined(__AVX__)) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
174243e2ceSHong Zhang 
18d4002b98SHong Zhang   #include <immintrin.h>
19d4002b98SHong Zhang 
20d4002b98SHong Zhang   #if !defined(_MM_SCALE_8)
21d4002b98SHong Zhang     #define _MM_SCALE_8 8
22d4002b98SHong Zhang   #endif
23d4002b98SHong Zhang 
24d4002b98SHong Zhang   #if defined(__AVX512F__)
25d4002b98SHong Zhang     /* these do not work
26d4002b98SHong Zhang    vec_idx  = _mm512_loadunpackhi_epi32(vec_idx,acolidx);
27d4002b98SHong Zhang    vec_vals = _mm512_loadunpackhi_pd(vec_vals,aval);
28d4002b98SHong Zhang   */
29d4002b98SHong Zhang     #define AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y) \
30d4002b98SHong Zhang       /* if the mask bit is set, copy from acolidx, otherwise from vec_idx */ \
31ef588d5cSRichard Tran Mills       vec_idx  = _mm256_loadu_si256((__m256i const *)acolidx); \
32ef588d5cSRichard Tran Mills       vec_vals = _mm512_loadu_pd(aval); \
33d4002b98SHong Zhang       vec_x    = _mm512_i32gather_pd(vec_idx, x, _MM_SCALE_8); \
34a48a6482SHong Zhang       vec_y    = _mm512_fmadd_pd(vec_x, vec_vals, vec_y)
355f70456aSHong Zhang   #elif defined(__AVX2__) && defined(__FMA__)
36a48a6482SHong Zhang     #define AVX2_Mult_Private(vec_idx, vec_x, vec_vals, vec_y) \
37ef588d5cSRichard Tran Mills       vec_vals = _mm256_loadu_pd(aval); \
38ef588d5cSRichard Tran Mills       vec_idx  = _mm_loadu_si128((__m128i const *)acolidx); /* SSE2 */ \
39a48a6482SHong Zhang       vec_x    = _mm256_i32gather_pd(x, vec_idx, _MM_SCALE_8); \
40a48a6482SHong Zhang       vec_y    = _mm256_fmadd_pd(vec_x, vec_vals, vec_y)
41d4002b98SHong Zhang   #endif
42d4002b98SHong Zhang #endif /* PETSC_HAVE_IMMINTRIN_H */
43d4002b98SHong Zhang 
445d83a8b1SBarry Smith /*@
45d4002b98SHong Zhang   MatSeqSELLSetPreallocation - For good matrix assembly performance
4620f4b53cSBarry Smith   the user should preallocate the matrix storage by setting the parameter `nz`
4720f4b53cSBarry Smith   (or the array `nnz`).
48d4002b98SHong Zhang 
49d083f849SBarry Smith   Collective
50d4002b98SHong Zhang 
51d4002b98SHong Zhang   Input Parameters:
5211a5261eSBarry Smith + B       - The `MATSEQSELL` matrix
5320f4b53cSBarry Smith . rlenmax - number of nonzeros per row (same for all rows), ignored if `rlen` is provided
5420f4b53cSBarry Smith - rlen    - array containing the number of nonzeros in the various rows (possibly different for each row) or `NULL`
5567be906fSBarry Smith 
5667be906fSBarry Smith   Level: intermediate
57d4002b98SHong Zhang 
58d4002b98SHong Zhang   Notes:
5967be906fSBarry Smith   Specify the preallocated storage with either `rlenmax` or `rlen` (not both).
6067be906fSBarry Smith   Set `rlenmax` = `PETSC_DEFAULT` and `rlen` = `NULL` for PETSc to control dynamic memory
6120f4b53cSBarry Smith   allocation.
62d4002b98SHong Zhang 
6311a5261eSBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
64d4002b98SHong Zhang   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
6567be906fSBarry Smith   You can also run with the option `-info` and look for messages with the string
66d4002b98SHong Zhang   malloc in them to see if additional memory allocation was needed.
67d4002b98SHong Zhang 
68fe59aa6dSJacob Faibussowitsch   Developer Notes:
6967be906fSBarry Smith   Use `rlenmax` of `MAT_SKIP_ALLOCATION` to not allocate any space for the matrix
70d4002b98SHong Zhang   entries or columns indices.
71d4002b98SHong Zhang 
72c7ee91abSRichard Tran Mills   The maximum number of nonzeos in any row should be as accurate as possible.
73c7ee91abSRichard Tran Mills   If it is underestimated, you will get bad performance due to reallocation
7467be906fSBarry Smith   (`MatSeqXSELLReallocateSELL()`).
75d4002b98SHong Zhang 
7667be906fSBarry Smith .seealso: `Mat`, `MATSEQSELL`, `MATSELL`, `MatCreate()`, `MatCreateSELL()`, `MatSetValues()`, `MatGetInfo()`
77d4002b98SHong Zhang  @*/
MatSeqSELLSetPreallocation(Mat B,PetscInt rlenmax,const PetscInt rlen[])78d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLSetPreallocation(Mat B, PetscInt rlenmax, const PetscInt rlen[])
79d71ae5a4SJacob Faibussowitsch {
80d4002b98SHong Zhang   PetscFunctionBegin;
81d4002b98SHong Zhang   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
82d4002b98SHong Zhang   PetscValidType(B, 1);
83cac4c232SBarry Smith   PetscTryMethod(B, "MatSeqSELLSetPreallocation_C", (Mat, PetscInt, const PetscInt[]), (B, rlenmax, rlen));
843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
85d4002b98SHong Zhang }
86d4002b98SHong Zhang 
MatSeqSELLSetPreallocation_SeqSELL(Mat B,PetscInt maxallocrow,const PetscInt rlen[])87d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLSetPreallocation_SeqSELL(Mat B, PetscInt maxallocrow, const PetscInt rlen[])
88d71ae5a4SJacob Faibussowitsch {
89d4002b98SHong Zhang   Mat_SeqSELL *b;
90d4002b98SHong Zhang   PetscInt     i, j, totalslices;
91773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
924e58db63SHong Zhang   PetscInt rlenmax = 0;
934e58db63SHong Zhang #endif
94d4002b98SHong Zhang   PetscBool skipallocation = PETSC_FALSE, realalloc = PETSC_FALSE;
95d4002b98SHong Zhang 
96d4002b98SHong Zhang   PetscFunctionBegin;
97d4002b98SHong Zhang   if (maxallocrow >= 0 || rlen) realalloc = PETSC_TRUE;
98d4002b98SHong Zhang   if (maxallocrow == MAT_SKIP_ALLOCATION) {
99d4002b98SHong Zhang     skipallocation = PETSC_TRUE;
100d4002b98SHong Zhang     maxallocrow    = 0;
101d4002b98SHong Zhang   }
102d4002b98SHong Zhang 
1039566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
1049566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
105d4002b98SHong Zhang 
106d4002b98SHong Zhang   /* FIXME: if one preallocates more space than needed, the matrix does not shrink automatically, but for best performance it should */
107d4002b98SHong Zhang   if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 5;
10808401ef6SPierre Jolivet   PetscCheck(maxallocrow >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "maxallocrow cannot be less than 0: value %" PetscInt_FMT, maxallocrow);
109d4002b98SHong Zhang   if (rlen) {
110d4002b98SHong Zhang     for (i = 0; i < B->rmap->n; i++) {
11108401ef6SPierre Jolivet       PetscCheck(rlen[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "rlen cannot be less than 0: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, rlen[i]);
11208401ef6SPierre Jolivet       PetscCheck(rlen[i] <= B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "rlen cannot be greater than row length: local row %" PetscInt_FMT " value %" PetscInt_FMT " rowlength %" PetscInt_FMT, i, rlen[i], B->cmap->n);
113d4002b98SHong Zhang     }
114d4002b98SHong Zhang   }
115d4002b98SHong Zhang 
116d4002b98SHong Zhang   B->preallocated = PETSC_TRUE;
117d4002b98SHong Zhang 
118d4002b98SHong Zhang   b = (Mat_SeqSELL *)B->data;
119d4002b98SHong Zhang 
12007e43b41SHong Zhang   if (!b->sliceheight) { /* not set yet */
121773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
12207e43b41SHong Zhang     b->sliceheight = 16;
12307e43b41SHong Zhang #else
12407e43b41SHong Zhang     b->sliceheight = 8;
12507e43b41SHong Zhang #endif
12607e43b41SHong Zhang   }
12707e43b41SHong Zhang   totalslices    = PetscCeilInt(B->rmap->n, b->sliceheight);
128d4002b98SHong Zhang   b->totalslices = totalslices;
129d4002b98SHong Zhang   if (!skipallocation) {
13007e43b41SHong Zhang     if (B->rmap->n % b->sliceheight) PetscCall(PetscInfo(B, "Padding rows to the SEQSELL matrix because the number of rows is not the multiple of the slice height (value %" PetscInt_FMT ")\n", B->rmap->n));
131d4002b98SHong Zhang 
132d4002b98SHong Zhang     if (!b->sliidx) { /* sliidx gives the starting index of each slice, the last element is the total space allocated */
1339566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(totalslices + 1, &b->sliidx));
134d4002b98SHong Zhang     }
135d4002b98SHong Zhang     if (!rlen) { /* if rlen is not provided, allocate same space for all the slices */
136d4002b98SHong Zhang       if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 10;
137d4002b98SHong Zhang       else if (maxallocrow < 0) maxallocrow = 1;
138773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
1394e58db63SHong Zhang       rlenmax = maxallocrow;
1404e58db63SHong Zhang       /* Pad the slice to DEVICE_MEM_ALIGN */
1414e58db63SHong Zhang       while (b->sliceheight * maxallocrow % DEVICE_MEM_ALIGN) maxallocrow++;
1424e58db63SHong Zhang #endif
14307e43b41SHong Zhang       for (i = 0; i <= totalslices; i++) b->sliidx[i] = b->sliceheight * i * maxallocrow;
144d4002b98SHong Zhang     } else {
145773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
1464e58db63SHong Zhang       PetscInt mul = DEVICE_MEM_ALIGN / b->sliceheight;
1474e58db63SHong Zhang #endif
148d4002b98SHong Zhang       maxallocrow  = 0;
149d4002b98SHong Zhang       b->sliidx[0] = 0;
150d4002b98SHong Zhang       for (i = 1; i < totalslices; i++) {
151d4002b98SHong Zhang         b->sliidx[i] = 0;
152ac530a7eSPierre Jolivet         for (j = 0; j < b->sliceheight; j++) b->sliidx[i] = PetscMax(b->sliidx[i], rlen[b->sliceheight * (i - 1) + j]);
153773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
154773bf0f6SHong Zhang         if (mul != 0) { /* Pad the slice to DEVICE_MEM_ALIGN if sliceheight < DEVICE_MEM_ALIGN */
1554e58db63SHong Zhang           rlenmax      = PetscMax(b->sliidx[i], rlenmax);
1564e58db63SHong Zhang           b->sliidx[i] = ((b->sliidx[i] - 1) / mul + 1) * mul;
157773bf0f6SHong Zhang         }
1584e58db63SHong Zhang #endif
159d4002b98SHong Zhang         maxallocrow = PetscMax(b->sliidx[i], maxallocrow);
16007e43b41SHong Zhang         PetscCall(PetscIntSumError(b->sliidx[i - 1], b->sliceheight * b->sliidx[i], &b->sliidx[i]));
161d4002b98SHong Zhang       }
162d4002b98SHong Zhang       /* last slice */
163d4002b98SHong Zhang       b->sliidx[totalslices] = 0;
16407e43b41SHong Zhang       for (j = b->sliceheight * (totalslices - 1); j < B->rmap->n; j++) b->sliidx[totalslices] = PetscMax(b->sliidx[totalslices], rlen[j]);
165773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
166773bf0f6SHong Zhang       if (mul != 0) {
1674e58db63SHong Zhang         rlenmax                = PetscMax(b->sliidx[i], rlenmax);
1684e58db63SHong Zhang         b->sliidx[totalslices] = ((b->sliidx[totalslices] - 1) / mul + 1) * mul;
169773bf0f6SHong Zhang       }
1704e58db63SHong Zhang #endif
171d4002b98SHong Zhang       maxallocrow            = PetscMax(b->sliidx[totalslices], maxallocrow);
17207e43b41SHong Zhang       b->sliidx[totalslices] = b->sliidx[totalslices - 1] + b->sliceheight * b->sliidx[totalslices];
173d4002b98SHong Zhang     }
174d4002b98SHong Zhang 
175d4002b98SHong Zhang     /* allocate space for val, colidx, rlen */
176d4002b98SHong Zhang     /* FIXME: should B's old memory be unlogged? */
1779566063dSJacob Faibussowitsch     PetscCall(MatSeqXSELLFreeSELL(B, &b->val, &b->colidx));
178d4002b98SHong Zhang     /* FIXME: assuming an element of the bit array takes 8 bits */
1799566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(b->sliidx[totalslices], &b->val, b->sliidx[totalslices], &b->colidx));
180d4002b98SHong Zhang     /* b->rlen will count nonzeros in each row so far. We dont copy rlen to b->rlen because the matrix has not been set. */
18107e43b41SHong Zhang     PetscCall(PetscCalloc1(b->sliceheight * totalslices, &b->rlen));
182d4002b98SHong Zhang 
183d4002b98SHong Zhang     b->singlemalloc = PETSC_TRUE;
184d4002b98SHong Zhang     b->free_val     = PETSC_TRUE;
185d4002b98SHong Zhang     b->free_colidx  = PETSC_TRUE;
186d4002b98SHong Zhang   } else {
187d4002b98SHong Zhang     b->free_val    = PETSC_FALSE;
188d4002b98SHong Zhang     b->free_colidx = PETSC_FALSE;
189d4002b98SHong Zhang   }
190d4002b98SHong Zhang 
191d4002b98SHong Zhang   b->nz          = 0;
192d4002b98SHong Zhang   b->maxallocrow = maxallocrow;
193773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
1944e58db63SHong Zhang   b->rlenmax = rlenmax;
1954e58db63SHong Zhang #else
196d4002b98SHong Zhang   b->rlenmax = maxallocrow;
1974e58db63SHong Zhang #endif
198d4002b98SHong Zhang   b->maxallocmat      = b->sliidx[totalslices];
199d4002b98SHong Zhang   B->info.nz_unneeded = (double)b->maxallocmat;
2001baa6e33SBarry Smith   if (realalloc) PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE));
2013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
202d4002b98SHong Zhang }
203d4002b98SHong Zhang 
MatGetRow_SeqSELL(Mat A,PetscInt row,PetscInt * nz,PetscInt ** idx,PetscScalar ** v)204ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRow_SeqSELL(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
205d71ae5a4SJacob Faibussowitsch {
2066108893eSStefano Zampini   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
2076108893eSStefano Zampini   PetscInt     shift;
2086108893eSStefano Zampini 
2096108893eSStefano Zampini   PetscFunctionBegin;
210aed4548fSBarry Smith   PetscCheck(row >= 0 && row < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range", row);
2116108893eSStefano Zampini   if (nz) *nz = a->rlen[row];
21207e43b41SHong Zhang   shift = a->sliidx[row / a->sliceheight] + (row % a->sliceheight);
2133a7d0413SPierre Jolivet   if (!a->getrowcols) PetscCall(PetscMalloc2(a->rlenmax, &a->getrowcols, a->rlenmax, &a->getrowvals));
2146108893eSStefano Zampini   if (idx) {
2156108893eSStefano Zampini     PetscInt j;
21607e43b41SHong Zhang     for (j = 0; j < a->rlen[row]; j++) a->getrowcols[j] = a->colidx[shift + a->sliceheight * j];
2176108893eSStefano Zampini     *idx = a->getrowcols;
2186108893eSStefano Zampini   }
2196108893eSStefano Zampini   if (v) {
2206108893eSStefano Zampini     PetscInt j;
22107e43b41SHong Zhang     for (j = 0; j < a->rlen[row]; j++) a->getrowvals[j] = a->val[shift + a->sliceheight * j];
2226108893eSStefano Zampini     *v = a->getrowvals;
2236108893eSStefano Zampini   }
2243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2256108893eSStefano Zampini }
2266108893eSStefano Zampini 
MatRestoreRow_SeqSELL(Mat A,PetscInt row,PetscInt * nz,PetscInt ** idx,PetscScalar ** v)227ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRow_SeqSELL(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
228d71ae5a4SJacob Faibussowitsch {
2296108893eSStefano Zampini   PetscFunctionBegin;
2303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2316108893eSStefano Zampini }
2326108893eSStefano Zampini 
MatConvert_SeqSELL_SeqAIJ(Mat A,MatType newtype,MatReuse reuse,Mat * newmat)233d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConvert_SeqSELL_SeqAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
234d71ae5a4SJacob Faibussowitsch {
235d4002b98SHong Zhang   Mat          B;
236d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
237e3f1f374SStefano Zampini   PetscInt     i;
238d4002b98SHong Zhang 
239d4002b98SHong Zhang   PetscFunctionBegin;
240ad013a7bSRichard Tran Mills   if (reuse == MAT_REUSE_MATRIX) {
241ad013a7bSRichard Tran Mills     B = *newmat;
2429566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(B));
243ad013a7bSRichard Tran Mills   } else {
2449566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
2459566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N));
2469566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATSEQAIJ));
2479566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(B, 0, a->rlen));
248ad013a7bSRichard Tran Mills   }
249d4002b98SHong Zhang 
250e3f1f374SStefano Zampini   for (i = 0; i < A->rmap->n; i++) {
251e108cb99SStefano Zampini     PetscInt     nz = 0, *cols = NULL;
252e108cb99SStefano Zampini     PetscScalar *vals = NULL;
253e3f1f374SStefano Zampini 
2549566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqSELL(A, i, &nz, &cols, &vals));
2559566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, 1, &i, nz, cols, vals, INSERT_VALUES));
2569566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqSELL(A, i, &nz, &cols, &vals));
257d4002b98SHong Zhang   }
258e3f1f374SStefano Zampini 
2599566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
2609566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
261d4002b98SHong Zhang   B->rmap->bs = A->rmap->bs;
262d4002b98SHong Zhang 
263d4002b98SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
2649566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A, &B));
265d4002b98SHong Zhang   } else {
266d4002b98SHong Zhang     *newmat = B;
267d4002b98SHong Zhang   }
2683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
269d4002b98SHong Zhang }
270d4002b98SHong Zhang 
271d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/aij.h>
272d4002b98SHong Zhang 
MatConvert_SeqAIJ_SeqSELL(Mat A,MatType newtype,MatReuse reuse,Mat * newmat)273d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConvert_SeqAIJ_SeqSELL(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
274d71ae5a4SJacob Faibussowitsch {
275d4002b98SHong Zhang   Mat                B;
276d4002b98SHong Zhang   Mat_SeqAIJ        *a  = (Mat_SeqAIJ *)A->data;
277d4002b98SHong Zhang   PetscInt          *ai = a->i, m = A->rmap->N, n = A->cmap->N, i, *rowlengths, row, ncols;
278d4002b98SHong Zhang   const PetscInt    *cols;
279d4002b98SHong Zhang   const PetscScalar *vals;
280d4002b98SHong Zhang 
281d4002b98SHong Zhang   PetscFunctionBegin;
282ad013a7bSRichard Tran Mills   if (reuse == MAT_REUSE_MATRIX) {
283ad013a7bSRichard Tran Mills     B = *newmat;
284ad013a7bSRichard Tran Mills   } else {
285d5e5b2e5SBarry Smith     if (PetscDefined(USE_DEBUG) || !a->ilen) {
2869566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(m, &rowlengths));
287ad540459SPierre Jolivet       for (i = 0; i < m; i++) rowlengths[i] = ai[i + 1] - ai[i];
288d5e5b2e5SBarry Smith     }
289d5e5b2e5SBarry Smith     if (PetscDefined(USE_DEBUG) && a->ilen) {
290d5e5b2e5SBarry Smith       PetscBool eq;
291418fb43bSPierre Jolivet       PetscCall(PetscArraycmp(rowlengths, a->ilen, m, &eq));
29228b400f6SJacob Faibussowitsch       PetscCheck(eq, PETSC_COMM_SELF, PETSC_ERR_PLIB, "SeqAIJ ilen array incorrect");
2939566063dSJacob Faibussowitsch       PetscCall(PetscFree(rowlengths));
294d5e5b2e5SBarry Smith       rowlengths = a->ilen;
295d5e5b2e5SBarry Smith     } else if (a->ilen) rowlengths = a->ilen;
2969566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
2979566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, m, n, m, n));
2989566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATSEQSELL));
2999566063dSJacob Faibussowitsch     PetscCall(MatSeqSELLSetPreallocation(B, 0, rowlengths));
3009566063dSJacob Faibussowitsch     if (rowlengths != a->ilen) PetscCall(PetscFree(rowlengths));
301ad013a7bSRichard Tran Mills   }
302d4002b98SHong Zhang 
303d4002b98SHong Zhang   for (row = 0; row < m; row++) {
3049566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqAIJ(A, row, &ncols, (PetscInt **)&cols, (PetscScalar **)&vals));
3059566063dSJacob Faibussowitsch     PetscCall(MatSetValues_SeqSELL(B, 1, &row, ncols, cols, vals, INSERT_VALUES));
3069566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqAIJ(A, row, &ncols, (PetscInt **)&cols, (PetscScalar **)&vals));
307d4002b98SHong Zhang   }
3089566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
3099566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
310d4002b98SHong Zhang   B->rmap->bs = A->rmap->bs;
311d4002b98SHong Zhang 
312d4002b98SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
3139566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A, &B));
314d4002b98SHong Zhang   } else {
315d4002b98SHong Zhang     *newmat = B;
316d4002b98SHong Zhang   }
3173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
318d4002b98SHong Zhang }
319d4002b98SHong Zhang 
MatMult_SeqSELL(Mat A,Vec xx,Vec yy)320d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMult_SeqSELL(Mat A, Vec xx, Vec yy)
321d71ae5a4SJacob Faibussowitsch {
322d4002b98SHong Zhang   Mat_SeqSELL       *a = (Mat_SeqSELL *)A->data;
323d4002b98SHong Zhang   PetscScalar       *y;
324d4002b98SHong Zhang   const PetscScalar *x;
325d4002b98SHong Zhang   const MatScalar   *aval        = a->val;
326d4002b98SHong Zhang   PetscInt           totalslices = a->totalslices;
327d4002b98SHong Zhang   const PetscInt    *acolidx     = a->colidx;
3287285fed1SHong Zhang   PetscInt           i, j;
329d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
330d4002b98SHong Zhang   __m512d  vec_x, vec_y, vec_vals;
331d4002b98SHong Zhang   __m256i  vec_idx;
332d4002b98SHong Zhang   __mmask8 mask;
333d4002b98SHong Zhang   __m512d  vec_x2, vec_y2, vec_vals2, vec_x3, vec_y3, vec_vals3, vec_x4, vec_y4, vec_vals4;
334d4002b98SHong Zhang   __m256i  vec_idx2, vec_idx3, vec_idx4;
3355f70456aSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(__FMA__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
336a48a6482SHong Zhang   __m128i   vec_idx;
337a48a6482SHong Zhang   __m256d   vec_x, vec_y, vec_y2, vec_vals;
338a48a6482SHong Zhang   MatScalar yval;
339a48a6482SHong Zhang   PetscInt  r, rows_left, row, nnz_in_row;
34021cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
341d4002b98SHong Zhang   __m128d   vec_x_tmp;
342d4002b98SHong Zhang   __m256d   vec_x, vec_y, vec_y2, vec_vals;
343d4002b98SHong Zhang   MatScalar yval;
344d4002b98SHong Zhang   PetscInt  r, rows_left, row, nnz_in_row;
345d4002b98SHong Zhang #else
34607e43b41SHong Zhang   PetscInt     k, sliceheight = a->sliceheight;
34707e43b41SHong Zhang   PetscScalar *sum;
348d4002b98SHong Zhang #endif
349d4002b98SHong Zhang 
350d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT)
351d4002b98SHong Zhang   #pragma disjoint(*x, *y, *aval)
352d4002b98SHong Zhang #endif
353d4002b98SHong Zhang 
354d4002b98SHong Zhang   PetscFunctionBegin;
3559566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
3569566063dSJacob Faibussowitsch   PetscCall(VecGetArray(yy, &y));
357d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
35807e43b41SHong Zhang   PetscCheck(a->sliceheight == 8, PETSC_COMM_SELF, PETSC_ERR_SUP, "The kernel requires a slice height of 8, but the input matrix has a slice height of %" PetscInt_FMT, a->sliceheight);
359d4002b98SHong Zhang   for (i = 0; i < totalslices; i++) { /* loop over slices */
360d4002b98SHong Zhang     PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
361d4002b98SHong Zhang     PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
362d4002b98SHong Zhang 
363d4002b98SHong Zhang     vec_y  = _mm512_setzero_pd();
364d4002b98SHong Zhang     vec_y2 = _mm512_setzero_pd();
365d4002b98SHong Zhang     vec_y3 = _mm512_setzero_pd();
366d4002b98SHong Zhang     vec_y4 = _mm512_setzero_pd();
367d4002b98SHong Zhang 
368da81f932SPierre Jolivet     j = a->sliidx[i] >> 3; /* 8 bytes are read at each time, corresponding to a slice column */
369d4002b98SHong Zhang     switch ((a->sliidx[i + 1] - a->sliidx[i]) / 8 & 3) {
370d4002b98SHong Zhang     case 3:
371d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
3729371c9d4SSatish Balay       acolidx += 8;
3739371c9d4SSatish Balay       aval += 8;
374d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2);
3759371c9d4SSatish Balay       acolidx += 8;
3769371c9d4SSatish Balay       aval += 8;
377d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx3, vec_x3, vec_vals3, vec_y3);
3789371c9d4SSatish Balay       acolidx += 8;
3799371c9d4SSatish Balay       aval += 8;
380d4002b98SHong Zhang       j += 3;
381d4002b98SHong Zhang       break;
382d4002b98SHong Zhang     case 2:
383d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
3849371c9d4SSatish Balay       acolidx += 8;
3859371c9d4SSatish Balay       aval += 8;
386d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2);
3879371c9d4SSatish Balay       acolidx += 8;
3889371c9d4SSatish Balay       aval += 8;
389d4002b98SHong Zhang       j += 2;
390d4002b98SHong Zhang       break;
391d4002b98SHong Zhang     case 1:
392d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
3939371c9d4SSatish Balay       acolidx += 8;
3949371c9d4SSatish Balay       aval += 8;
395d4002b98SHong Zhang       j += 1;
396d4002b98SHong Zhang       break;
397d4002b98SHong Zhang     }
398d4002b98SHong Zhang   #pragma novector
399d4002b98SHong Zhang     for (; j < (a->sliidx[i + 1] >> 3); j += 4) {
400d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
4019371c9d4SSatish Balay       acolidx += 8;
4029371c9d4SSatish Balay       aval += 8;
403d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2);
4049371c9d4SSatish Balay       acolidx += 8;
4059371c9d4SSatish Balay       aval += 8;
406d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx3, vec_x3, vec_vals3, vec_y3);
4079371c9d4SSatish Balay       acolidx += 8;
4089371c9d4SSatish Balay       aval += 8;
409d4002b98SHong Zhang       AVX512_Mult_Private(vec_idx4, vec_x4, vec_vals4, vec_y4);
4109371c9d4SSatish Balay       acolidx += 8;
4119371c9d4SSatish Balay       aval += 8;
412d4002b98SHong Zhang     }
413d4002b98SHong Zhang 
414d4002b98SHong Zhang     vec_y = _mm512_add_pd(vec_y, vec_y2);
415d4002b98SHong Zhang     vec_y = _mm512_add_pd(vec_y, vec_y3);
416d4002b98SHong Zhang     vec_y = _mm512_add_pd(vec_y, vec_y4);
417d4002b98SHong Zhang     if (i == totalslices - 1 && A->rmap->n & 0x07) { /* if last slice has padding rows */
418d4002b98SHong Zhang       mask = (__mmask8)(0xff >> (8 - (A->rmap->n & 0x07)));
419ef588d5cSRichard Tran Mills       _mm512_mask_storeu_pd(&y[8 * i], mask, vec_y);
420d4002b98SHong Zhang     } else {
421ef588d5cSRichard Tran Mills       _mm512_storeu_pd(&y[8 * i], vec_y);
422d4002b98SHong Zhang     }
423d4002b98SHong Zhang   }
4245f70456aSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(__FMA__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
42507e43b41SHong Zhang   PetscCheck(a->sliceheight == 8, PETSC_COMM_SELF, PETSC_ERR_SUP, "The kernel requires a slice height of 8, but the input matrix has a slice height of %" PetscInt_FMT, a->sliceheight);
426a48a6482SHong Zhang   for (i = 0; i < totalslices; i++) { /* loop over full slices */
427a48a6482SHong Zhang     PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
428a48a6482SHong Zhang     PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
429a48a6482SHong Zhang 
430a48a6482SHong Zhang     /* last slice may have padding rows. Don't use vectorization. */
431a48a6482SHong Zhang     if (i == totalslices - 1 && (A->rmap->n & 0x07)) {
432a48a6482SHong Zhang       rows_left = A->rmap->n - 8 * i;
433a48a6482SHong Zhang       for (r = 0; r < rows_left; ++r) {
434a48a6482SHong Zhang         yval       = (MatScalar)0;
435a48a6482SHong Zhang         row        = 8 * i + r;
436a48a6482SHong Zhang         nnz_in_row = a->rlen[row];
437a48a6482SHong Zhang         for (j = 0; j < nnz_in_row; ++j) yval += aval[8 * j + r] * x[acolidx[8 * j + r]];
438a48a6482SHong Zhang         y[row] = yval;
439a48a6482SHong Zhang       }
440a48a6482SHong Zhang       break;
441a48a6482SHong Zhang     }
442a48a6482SHong Zhang 
443a48a6482SHong Zhang     vec_y  = _mm256_setzero_pd();
444a48a6482SHong Zhang     vec_y2 = _mm256_setzero_pd();
445a48a6482SHong Zhang 
446a48a6482SHong Zhang   /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */
447a48a6482SHong Zhang   #pragma novector
448a48a6482SHong Zhang   #pragma unroll(2)
449a48a6482SHong Zhang     for (j = a->sliidx[i]; j < a->sliidx[i + 1]; j += 8) {
450a48a6482SHong Zhang       AVX2_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
4519371c9d4SSatish Balay       aval += 4;
4529371c9d4SSatish Balay       acolidx += 4;
453a48a6482SHong Zhang       AVX2_Mult_Private(vec_idx, vec_x, vec_vals, vec_y2);
4549371c9d4SSatish Balay       aval += 4;
4559371c9d4SSatish Balay       acolidx += 4;
456a48a6482SHong Zhang     }
457a48a6482SHong Zhang 
458ef588d5cSRichard Tran Mills     _mm256_storeu_pd(y + i * 8, vec_y);
459ef588d5cSRichard Tran Mills     _mm256_storeu_pd(y + i * 8 + 4, vec_y2);
460a48a6482SHong Zhang   }
46121cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
46207e43b41SHong Zhang   PetscCheck(a->sliceheight == 8, PETSC_COMM_SELF, PETSC_ERR_SUP, "The kernel requires a slice height of 8, but the input matrix has a slice height of %" PetscInt_FMT, a->sliceheight);
463d4002b98SHong Zhang   for (i = 0; i < totalslices; i++) { /* loop over full slices */
464d4002b98SHong Zhang     PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
465d4002b98SHong Zhang     PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
466d4002b98SHong Zhang 
467d4002b98SHong Zhang     vec_y  = _mm256_setzero_pd();
468d4002b98SHong Zhang     vec_y2 = _mm256_setzero_pd();
469d4002b98SHong Zhang 
470d4002b98SHong Zhang     /* last slice may have padding rows. Don't use vectorization. */
471d4002b98SHong Zhang     if (i == totalslices - 1 && (A->rmap->n & 0x07)) {
472d4002b98SHong Zhang       rows_left = A->rmap->n - 8 * i;
473d4002b98SHong Zhang       for (r = 0; r < rows_left; ++r) {
474d4002b98SHong Zhang         yval       = (MatScalar)0;
475d4002b98SHong Zhang         row        = 8 * i + r;
476d4002b98SHong Zhang         nnz_in_row = a->rlen[row];
477d4002b98SHong Zhang         for (j = 0; j < nnz_in_row; ++j) yval += aval[8 * j + r] * x[acolidx[8 * j + r]];
478d4002b98SHong Zhang         y[row] = yval;
479d4002b98SHong Zhang       }
480d4002b98SHong Zhang       break;
481d4002b98SHong Zhang     }
482d4002b98SHong Zhang 
483d4002b98SHong Zhang   /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */
484a48a6482SHong Zhang   #pragma novector
485a48a6482SHong Zhang   #pragma unroll(2)
4867285fed1SHong Zhang     for (j = a->sliidx[i]; j < a->sliidx[i + 1]; j += 8) {
487d4002b98SHong Zhang       vec_vals  = _mm256_loadu_pd(aval);
488165f9cc3SJed Brown       vec_x_tmp = _mm_setzero_pd();
489d4002b98SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
490d4002b98SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
491d4002b98SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x, vec_x_tmp, 0);
492d4002b98SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
493d4002b98SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
494d4002b98SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x, vec_x_tmp, 1);
495d4002b98SHong Zhang       vec_y     = _mm256_add_pd(_mm256_mul_pd(vec_x, vec_vals), vec_y);
496d4002b98SHong Zhang       aval += 4;
497d4002b98SHong Zhang 
498d4002b98SHong Zhang       vec_vals  = _mm256_loadu_pd(aval);
499d4002b98SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
500d4002b98SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
501d4002b98SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x, vec_x_tmp, 0);
502d4002b98SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
503d4002b98SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
504d4002b98SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x, vec_x_tmp, 1);
505d4002b98SHong Zhang       vec_y2    = _mm256_add_pd(_mm256_mul_pd(vec_x, vec_vals), vec_y2);
506d4002b98SHong Zhang       aval += 4;
507d4002b98SHong Zhang     }
508d4002b98SHong Zhang 
509d4002b98SHong Zhang     _mm256_storeu_pd(y + i * 8, vec_y);
510d4002b98SHong Zhang     _mm256_storeu_pd(y + i * 8 + 4, vec_y2);
511d4002b98SHong Zhang   }
512d4002b98SHong Zhang #else
51307e43b41SHong Zhang   PetscCall(PetscMalloc1(sliceheight, &sum));
514d4002b98SHong Zhang   for (i = 0; i < totalslices; i++) { /* loop over slices */
51507e43b41SHong Zhang     for (j = 0; j < sliceheight; j++) {
5162d1451d4SHong Zhang       sum[j] = 0.0;
51707e43b41SHong Zhang       for (k = a->sliidx[i] + j; k < a->sliidx[i + 1]; k += sliceheight) sum[j] += aval[k] * x[acolidx[k]];
518d4002b98SHong Zhang     }
51907e43b41SHong Zhang     if (i == totalslices - 1 && (A->rmap->n % sliceheight)) { /* if last slice has padding rows */
52007e43b41SHong Zhang       for (j = 0; j < (A->rmap->n % sliceheight); j++) y[sliceheight * i + j] = sum[j];
521d4002b98SHong Zhang     } else {
52207e43b41SHong Zhang       for (j = 0; j < sliceheight; j++) y[sliceheight * i + j] = sum[j];
523d4002b98SHong Zhang     }
524d4002b98SHong Zhang   }
52507e43b41SHong Zhang   PetscCall(PetscFree(sum));
526d4002b98SHong Zhang #endif
527d4002b98SHong Zhang 
5289566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(2.0 * a->nz - a->nonzerorowcnt)); /* theoretical minimal FLOPs */
5299566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
5309566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(yy, &y));
5313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
532d4002b98SHong Zhang }
533d4002b98SHong Zhang 
534d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/ftn-kernels/fmultadd.h>
MatMultAdd_SeqSELL(Mat A,Vec xx,Vec yy,Vec zz)535d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultAdd_SeqSELL(Mat A, Vec xx, Vec yy, Vec zz)
536d71ae5a4SJacob Faibussowitsch {
537d4002b98SHong Zhang   Mat_SeqSELL       *a = (Mat_SeqSELL *)A->data;
538d4002b98SHong Zhang   PetscScalar       *y, *z;
539d4002b98SHong Zhang   const PetscScalar *x;
540d4002b98SHong Zhang   const MatScalar   *aval        = a->val;
541d4002b98SHong Zhang   PetscInt           totalslices = a->totalslices;
542d4002b98SHong Zhang   const PetscInt    *acolidx     = a->colidx;
543d4002b98SHong Zhang   PetscInt           i, j;
544d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
5457285fed1SHong Zhang   __m512d  vec_x, vec_y, vec_vals;
546d4002b98SHong Zhang   __m256i  vec_idx;
5475ea36cfaSSatish Balay   __mmask8 mask = 0;
5487285fed1SHong Zhang   __m512d  vec_x2, vec_y2, vec_vals2, vec_x3, vec_y3, vec_vals3, vec_x4, vec_y4, vec_vals4;
5497285fed1SHong Zhang   __m256i  vec_idx2, vec_idx3, vec_idx4;
55021cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
5517285fed1SHong Zhang   __m128d   vec_x_tmp;
5527285fed1SHong Zhang   __m256d   vec_x, vec_y, vec_y2, vec_vals;
5537285fed1SHong Zhang   MatScalar yval;
5547285fed1SHong Zhang   PetscInt  r, row, nnz_in_row;
555d4002b98SHong Zhang #else
55607e43b41SHong Zhang   PetscInt     k, sliceheight = a->sliceheight;
55707e43b41SHong Zhang   PetscScalar *sum;
558d4002b98SHong Zhang #endif
559d4002b98SHong Zhang 
560d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT)
561d4002b98SHong Zhang   #pragma disjoint(*x, *y, *aval)
562d4002b98SHong Zhang #endif
563d4002b98SHong Zhang 
564d4002b98SHong Zhang   PetscFunctionBegin;
5652d1451d4SHong Zhang   if (!a->nz) {
5662d1451d4SHong Zhang     PetscCall(VecCopy(yy, zz));
5672d1451d4SHong Zhang     PetscFunctionReturn(PETSC_SUCCESS);
5682d1451d4SHong Zhang   }
5699566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xx, &x));
5709566063dSJacob Faibussowitsch   PetscCall(VecGetArrayPair(yy, zz, &y, &z));
571d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
57207e43b41SHong Zhang   PetscCheck(a->sliceheight == 8, PETSC_COMM_SELF, PETSC_ERR_SUP, "The kernel requires a slice height of 8, but the input matrix has a slice height of %" PetscInt_FMT, a->sliceheight);
5737285fed1SHong Zhang   for (i = 0; i < totalslices; i++) { /* loop over slices */
5747285fed1SHong Zhang     PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
5757285fed1SHong Zhang     PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
5767285fed1SHong Zhang 
577d4002b98SHong Zhang     if (i == totalslices - 1 && A->rmap->n & 0x07) { /* if last slice has padding rows */
578d4002b98SHong Zhang       mask  = (__mmask8)(0xff >> (8 - (A->rmap->n & 0x07)));
579ef588d5cSRichard Tran Mills       vec_y = _mm512_mask_loadu_pd(vec_y, mask, &y[8 * i]);
5807285fed1SHong Zhang     } else {
581ef588d5cSRichard Tran Mills       vec_y = _mm512_loadu_pd(&y[8 * i]);
5827285fed1SHong Zhang     }
5837285fed1SHong Zhang     vec_y2 = _mm512_setzero_pd();
5847285fed1SHong Zhang     vec_y3 = _mm512_setzero_pd();
5857285fed1SHong Zhang     vec_y4 = _mm512_setzero_pd();
5867285fed1SHong Zhang 
587da81f932SPierre Jolivet     j = a->sliidx[i] >> 3; /* 8 bytes are read at each time, corresponding to a slice column */
5887285fed1SHong Zhang     switch ((a->sliidx[i + 1] - a->sliidx[i]) / 8 & 3) {
5897285fed1SHong Zhang     case 3:
5907285fed1SHong Zhang       AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
5919371c9d4SSatish Balay       acolidx += 8;
5929371c9d4SSatish Balay       aval += 8;
5937285fed1SHong Zhang       AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2);
5949371c9d4SSatish Balay       acolidx += 8;
5959371c9d4SSatish Balay       aval += 8;
5967285fed1SHong Zhang       AVX512_Mult_Private(vec_idx3, vec_x3, vec_vals3, vec_y3);
5979371c9d4SSatish Balay       acolidx += 8;
5989371c9d4SSatish Balay       aval += 8;
5997285fed1SHong Zhang       j += 3;
6007285fed1SHong Zhang       break;
6017285fed1SHong Zhang     case 2:
6027285fed1SHong Zhang       AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
6039371c9d4SSatish Balay       acolidx += 8;
6049371c9d4SSatish Balay       aval += 8;
6057285fed1SHong Zhang       AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2);
6069371c9d4SSatish Balay       acolidx += 8;
6079371c9d4SSatish Balay       aval += 8;
6087285fed1SHong Zhang       j += 2;
6097285fed1SHong Zhang       break;
6107285fed1SHong Zhang     case 1:
6117285fed1SHong Zhang       AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
6129371c9d4SSatish Balay       acolidx += 8;
6139371c9d4SSatish Balay       aval += 8;
6147285fed1SHong Zhang       j += 1;
6157285fed1SHong Zhang       break;
6167285fed1SHong Zhang     }
6177285fed1SHong Zhang   #pragma novector
6187285fed1SHong Zhang     for (; j < (a->sliidx[i + 1] >> 3); j += 4) {
6197285fed1SHong Zhang       AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
6209371c9d4SSatish Balay       acolidx += 8;
6219371c9d4SSatish Balay       aval += 8;
6227285fed1SHong Zhang       AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2);
6239371c9d4SSatish Balay       acolidx += 8;
6249371c9d4SSatish Balay       aval += 8;
6257285fed1SHong Zhang       AVX512_Mult_Private(vec_idx3, vec_x3, vec_vals3, vec_y3);
6269371c9d4SSatish Balay       acolidx += 8;
6279371c9d4SSatish Balay       aval += 8;
6287285fed1SHong Zhang       AVX512_Mult_Private(vec_idx4, vec_x4, vec_vals4, vec_y4);
6299371c9d4SSatish Balay       acolidx += 8;
6309371c9d4SSatish Balay       aval += 8;
6317285fed1SHong Zhang     }
6327285fed1SHong Zhang 
6337285fed1SHong Zhang     vec_y = _mm512_add_pd(vec_y, vec_y2);
6347285fed1SHong Zhang     vec_y = _mm512_add_pd(vec_y, vec_y3);
6357285fed1SHong Zhang     vec_y = _mm512_add_pd(vec_y, vec_y4);
6367285fed1SHong Zhang     if (i == totalslices - 1 && A->rmap->n & 0x07) { /* if last slice has padding rows */
637ef588d5cSRichard Tran Mills       _mm512_mask_storeu_pd(&z[8 * i], mask, vec_y);
638d4002b98SHong Zhang     } else {
639ef588d5cSRichard Tran Mills       _mm512_storeu_pd(&z[8 * i], vec_y);
640d4002b98SHong Zhang     }
6417285fed1SHong Zhang   }
64221cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
64307e43b41SHong Zhang   PetscCheck(a->sliceheight == 8, PETSC_COMM_SELF, PETSC_ERR_SUP, "The kernel requires a slice height of 8, but the input matrix has a slice height of %" PetscInt_FMT, a->sliceheight);
6447285fed1SHong Zhang   for (i = 0; i < totalslices; i++) { /* loop over full slices */
6457285fed1SHong Zhang     PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
6467285fed1SHong Zhang     PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
6477285fed1SHong Zhang 
6487285fed1SHong Zhang     /* last slice may have padding rows. Don't use vectorization. */
6497285fed1SHong Zhang     if (i == totalslices - 1 && (A->rmap->n & 0x07)) {
6507285fed1SHong Zhang       for (r = 0; r < (A->rmap->n & 0x07); ++r) {
6517285fed1SHong Zhang         row        = 8 * i + r;
6527285fed1SHong Zhang         yval       = (MatScalar)0.0;
6537285fed1SHong Zhang         nnz_in_row = a->rlen[row];
6547285fed1SHong Zhang         for (j = 0; j < nnz_in_row; ++j) yval += aval[8 * j + r] * x[acolidx[8 * j + r]];
6557285fed1SHong Zhang         z[row] = y[row] + yval;
6567285fed1SHong Zhang       }
6577285fed1SHong Zhang       break;
6587285fed1SHong Zhang     }
6597285fed1SHong Zhang 
6607285fed1SHong Zhang     vec_y  = _mm256_loadu_pd(y + 8 * i);
6617285fed1SHong Zhang     vec_y2 = _mm256_loadu_pd(y + 8 * i + 4);
6627285fed1SHong Zhang 
6637285fed1SHong Zhang     /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */
6647285fed1SHong Zhang     for (j = a->sliidx[i]; j < a->sliidx[i + 1]; j += 8) {
6657285fed1SHong Zhang       vec_vals  = _mm256_loadu_pd(aval);
666165f9cc3SJed Brown       vec_x_tmp = _mm_setzero_pd();
6677285fed1SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
6687285fed1SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
669165f9cc3SJed Brown       vec_x     = _mm256_setzero_pd();
6707285fed1SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x, vec_x_tmp, 0);
6717285fed1SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
6727285fed1SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
6737285fed1SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x, vec_x_tmp, 1);
6747285fed1SHong Zhang       vec_y     = _mm256_add_pd(_mm256_mul_pd(vec_x, vec_vals), vec_y);
6757285fed1SHong Zhang       aval += 4;
6767285fed1SHong Zhang 
6777285fed1SHong Zhang       vec_vals  = _mm256_loadu_pd(aval);
6787285fed1SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
6797285fed1SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
6807285fed1SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x, vec_x_tmp, 0);
6817285fed1SHong Zhang       vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
6827285fed1SHong Zhang       vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
6837285fed1SHong Zhang       vec_x     = _mm256_insertf128_pd(vec_x, vec_x_tmp, 1);
6847285fed1SHong Zhang       vec_y2    = _mm256_add_pd(_mm256_mul_pd(vec_x, vec_vals), vec_y2);
6857285fed1SHong Zhang       aval += 4;
6867285fed1SHong Zhang     }
6877285fed1SHong Zhang 
6887285fed1SHong Zhang     _mm256_storeu_pd(z + i * 8, vec_y);
6897285fed1SHong Zhang     _mm256_storeu_pd(z + i * 8 + 4, vec_y2);
6907285fed1SHong Zhang   }
691d4002b98SHong Zhang #else
69207e43b41SHong Zhang   PetscCall(PetscMalloc1(sliceheight, &sum));
6937285fed1SHong Zhang   for (i = 0; i < totalslices; i++) { /* loop over slices */
69407e43b41SHong Zhang     for (j = 0; j < sliceheight; j++) {
6952d1451d4SHong Zhang       sum[j] = 0.0;
69607e43b41SHong Zhang       for (k = a->sliidx[i] + j; k < a->sliidx[i + 1]; k += sliceheight) sum[j] += aval[k] * x[acolidx[k]];
697d4002b98SHong Zhang     }
69807e43b41SHong Zhang     if (i == totalslices - 1 && (A->rmap->n % sliceheight)) {
69907e43b41SHong Zhang       for (j = 0; j < (A->rmap->n % sliceheight); j++) z[sliceheight * i + j] = y[sliceheight * i + j] + sum[j];
700d4002b98SHong Zhang     } else {
70107e43b41SHong Zhang       for (j = 0; j < sliceheight; j++) z[sliceheight * i + j] = y[sliceheight * i + j] + sum[j];
7027285fed1SHong Zhang     }
703d4002b98SHong Zhang   }
70407e43b41SHong Zhang   PetscCall(PetscFree(sum));
705d4002b98SHong Zhang #endif
706d4002b98SHong Zhang 
7079566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(2.0 * a->nz));
7089566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xx, &x));
7099566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayPair(yy, zz, &y, &z));
7103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
711d4002b98SHong Zhang }
712d4002b98SHong Zhang 
MatMultTransposeAdd_SeqSELL(Mat A,Vec xx,Vec zz,Vec yy)713d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTransposeAdd_SeqSELL(Mat A, Vec xx, Vec zz, Vec yy)
714d71ae5a4SJacob Faibussowitsch {
715d4002b98SHong Zhang   Mat_SeqSELL       *a = (Mat_SeqSELL *)A->data;
716d4002b98SHong Zhang   PetscScalar       *y;
717d4002b98SHong Zhang   const PetscScalar *x;
718d4002b98SHong Zhang   const MatScalar   *aval    = a->val;
719d4002b98SHong Zhang   const PetscInt    *acolidx = a->colidx;
72007e43b41SHong Zhang   PetscInt           i, j, r, row, nnz_in_row, totalslices = a->totalslices, sliceheight = a->sliceheight;
721d4002b98SHong Zhang 
722d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT)
723d4002b98SHong Zhang   #pragma disjoint(*x, *y, *aval)
724d4002b98SHong Zhang #endif
725d4002b98SHong Zhang 
726d4002b98SHong Zhang   PetscFunctionBegin;
727b94d7dedSBarry Smith   if (A->symmetric == PETSC_BOOL3_TRUE) {
7289566063dSJacob Faibussowitsch     PetscCall(MatMultAdd_SeqSELL(A, xx, zz, yy));
7293ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
7309fc32365SStefano Zampini   }
7319566063dSJacob Faibussowitsch   if (zz != yy) PetscCall(VecCopy(zz, yy));
7322d1451d4SHong Zhang 
7332d1451d4SHong Zhang   if (a->nz) {
7349566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(xx, &x));
7359566063dSJacob Faibussowitsch     PetscCall(VecGetArray(yy, &y));
736d4002b98SHong Zhang     for (i = 0; i < a->totalslices; i++) { /* loop over slices */
73707e43b41SHong Zhang       if (i == totalslices - 1 && (A->rmap->n % sliceheight)) {
73807e43b41SHong Zhang         for (r = 0; r < (A->rmap->n % sliceheight); ++r) {
73907e43b41SHong Zhang           row        = sliceheight * i + r;
7407285fed1SHong Zhang           nnz_in_row = a->rlen[row];
74107e43b41SHong Zhang           for (j = 0; j < nnz_in_row; ++j) y[acolidx[sliceheight * j + r]] += aval[sliceheight * j + r] * x[row];
7427285fed1SHong Zhang         }
7437285fed1SHong Zhang         break;
7447285fed1SHong Zhang       }
74507e43b41SHong Zhang       for (r = 0; r < sliceheight; ++r)
74607e43b41SHong Zhang         for (j = a->sliidx[i] + r; j < a->sliidx[i + 1]; j += sliceheight) y[acolidx[j]] += aval[j] * x[sliceheight * i + r];
747d4002b98SHong Zhang     }
7482d1451d4SHong Zhang     PetscCall(PetscLogFlops(2.0 * a->nz));
7499566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(xx, &x));
7509566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(yy, &y));
7512d1451d4SHong Zhang   }
7523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
753d4002b98SHong Zhang }
754d4002b98SHong Zhang 
MatMultTranspose_SeqSELL(Mat A,Vec xx,Vec yy)755d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTranspose_SeqSELL(Mat A, Vec xx, Vec yy)
756d71ae5a4SJacob Faibussowitsch {
757d4002b98SHong Zhang   PetscFunctionBegin;
758b94d7dedSBarry Smith   if (A->symmetric == PETSC_BOOL3_TRUE) {
7599566063dSJacob Faibussowitsch     PetscCall(MatMult_SeqSELL(A, xx, yy));
7609fc32365SStefano Zampini   } else {
7619566063dSJacob Faibussowitsch     PetscCall(VecSet(yy, 0.0));
7629566063dSJacob Faibussowitsch     PetscCall(MatMultTransposeAdd_SeqSELL(A, xx, yy, yy));
7639fc32365SStefano Zampini   }
7643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
765d4002b98SHong Zhang }
766d4002b98SHong Zhang 
MatGetDiagonalMarkers_SeqSELL(Mat A,const PetscInt ** diag,PetscBool * diagDense)7679234b629SBarry Smith static PetscErrorCode MatGetDiagonalMarkers_SeqSELL(Mat A, const PetscInt **diag, PetscBool *diagDense)
768d71ae5a4SJacob Faibussowitsch {
769d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
770d4002b98SHong Zhang 
771d4002b98SHong Zhang   PetscFunctionBegin;
772421480d9SBarry Smith   if (A->factortype != MAT_FACTOR_NONE) {
773421480d9SBarry Smith     PetscAssertPointer(diag, 2);
774421480d9SBarry Smith     PetscCheck(!diagDense, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot check for dense diagonal with factored matrices");
775421480d9SBarry Smith     *diag = a->diag;
7763ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
777d4002b98SHong Zhang   }
778421480d9SBarry Smith   PetscCheck(diag || diagDense, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "At least one of diag or diagDense must be requested");
779421480d9SBarry Smith   if (a->diagNonzeroState != A->nonzerostate || (diag && !a->diag)) {
78007425a8dSBarry Smith     const PetscInt m = A->rmap->n;
78107425a8dSBarry Smith     PetscInt       shift;
782d4002b98SHong Zhang 
783421480d9SBarry Smith     if (!diag && !a->diag) {
78407425a8dSBarry Smith       a->diagDense = PETSC_TRUE;
785421480d9SBarry Smith       for (PetscInt i = 0; i < m; i++) {
786421480d9SBarry Smith         PetscBool found = PETSC_FALSE;
787421480d9SBarry Smith 
788421480d9SBarry Smith         shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */
789421480d9SBarry Smith         for (PetscInt j = 0; j < a->rlen[i]; j++) {
790421480d9SBarry Smith           if (a->colidx[shift + a->sliceheight * j] == i) {
791421480d9SBarry Smith             a->diag[i] = shift + a->sliceheight * j;
792421480d9SBarry Smith             found      = PETSC_TRUE;
793421480d9SBarry Smith             break;
794421480d9SBarry Smith           }
795421480d9SBarry Smith         }
796421480d9SBarry Smith         if (!found) {
797421480d9SBarry Smith           a->diagDense        = PETSC_FALSE;
798421480d9SBarry Smith           *diagDense          = a->diagDense;
799421480d9SBarry Smith           a->diagNonzeroState = A->nonzerostate;
800421480d9SBarry Smith           PetscFunctionReturn(PETSC_SUCCESS);
801421480d9SBarry Smith         }
802421480d9SBarry Smith       }
803421480d9SBarry Smith     } else {
804421480d9SBarry Smith       if (!a->diag) PetscCall(PetscMalloc1(m, &a->diag));
805421480d9SBarry Smith       a->diagDense = PETSC_TRUE;
806421480d9SBarry Smith       for (PetscInt i = 0; i < m; i++) {
80707425a8dSBarry Smith         PetscBool found = PETSC_FALSE;
80807425a8dSBarry Smith 
80907e43b41SHong Zhang         shift      = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */
810d4002b98SHong Zhang         a->diag[i] = -1;
81107425a8dSBarry Smith         for (PetscInt j = 0; j < a->rlen[i]; j++) {
81207e43b41SHong Zhang           if (a->colidx[shift + a->sliceheight * j] == i) {
81307e43b41SHong Zhang             a->diag[i] = shift + a->sliceheight * j;
81407425a8dSBarry Smith             found      = PETSC_TRUE;
815d4002b98SHong Zhang             break;
816d4002b98SHong Zhang           }
817d4002b98SHong Zhang         }
81807425a8dSBarry Smith         if (!found) a->diagDense = PETSC_FALSE;
819d4002b98SHong Zhang       }
820421480d9SBarry Smith     }
82107425a8dSBarry Smith     a->diagNonzeroState = A->nonzerostate;
822421480d9SBarry Smith   }
823421480d9SBarry Smith   if (diag) *diag = a->diag;
824421480d9SBarry Smith   if (diagDense) *diagDense = a->diagDense;
8253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
826d4002b98SHong Zhang }
827d4002b98SHong Zhang 
828d4002b98SHong Zhang /*
829d4002b98SHong Zhang   Negative shift indicates do not generate an error if there is a zero diagonal, just invert it anyways
830d4002b98SHong Zhang */
MatInvertDiagonalForSOR_SeqSELL(Mat A,PetscScalar omega,PetscScalar fshift)83107425a8dSBarry Smith static PetscErrorCode MatInvertDiagonalForSOR_SeqSELL(Mat A, PetscScalar omega, PetscScalar fshift)
832d71ae5a4SJacob Faibussowitsch {
833d4002b98SHong Zhang   Mat_SeqSELL    *a = (Mat_SeqSELL *)A->data;
834421480d9SBarry Smith   PetscInt        i, m = A->rmap->n;
835d4002b98SHong Zhang   MatScalar      *val = a->val;
836d4002b98SHong Zhang   PetscScalar    *idiag, *mdiag;
837421480d9SBarry Smith   const PetscInt *diag;
838421480d9SBarry Smith   PetscBool       diagDense;
839d4002b98SHong Zhang 
840d4002b98SHong Zhang   PetscFunctionBegin;
84107425a8dSBarry Smith   if (a->idiagState == ((PetscObject)A)->state && a->omega == omega && a->fshift == fshift) PetscFunctionReturn(PETSC_SUCCESS);
842421480d9SBarry Smith   PetscCall(MatGetDiagonalMarkers_SeqSELL(A, &diag, &diagDense));
843421480d9SBarry Smith   PetscCheck(diagDense, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix must have all diagonal locations to invert them");
844421480d9SBarry Smith 
845d4002b98SHong Zhang   if (!a->idiag) {
8469566063dSJacob Faibussowitsch     PetscCall(PetscMalloc3(m, &a->idiag, m, &a->mdiag, m, &a->ssor_work));
847d4002b98SHong Zhang     val = a->val;
848d4002b98SHong Zhang   }
849d4002b98SHong Zhang   mdiag = a->mdiag;
850d4002b98SHong Zhang   idiag = a->idiag;
851d4002b98SHong Zhang 
852d4002b98SHong Zhang   if (omega == 1.0 && PetscRealPart(fshift) <= 0.0) {
853d4002b98SHong Zhang     for (i = 0; i < m; i++) {
854d4002b98SHong Zhang       mdiag[i] = val[diag[i]];
855d4002b98SHong Zhang       if (!PetscAbsScalar(mdiag[i])) { /* zero diagonal */
8560fdf79fbSJacob Faibussowitsch         PetscCheck(PetscRealPart(fshift), PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Zero diagonal on row %" PetscInt_FMT, i);
8579566063dSJacob Faibussowitsch         PetscCall(PetscInfo(A, "Zero diagonal on row %" PetscInt_FMT "\n", i));
858d4002b98SHong Zhang         A->factorerrortype             = MAT_FACTOR_NUMERIC_ZEROPIVOT;
859d4002b98SHong Zhang         A->factorerror_zeropivot_value = 0.0;
860d4002b98SHong Zhang         A->factorerror_zeropivot_row   = i;
861d4002b98SHong Zhang       }
862d4002b98SHong Zhang       idiag[i] = 1.0 / val[diag[i]];
863d4002b98SHong Zhang     }
8649566063dSJacob Faibussowitsch     PetscCall(PetscLogFlops(m));
865d4002b98SHong Zhang   } else {
866d4002b98SHong Zhang     for (i = 0; i < m; i++) {
867d4002b98SHong Zhang       mdiag[i] = val[diag[i]];
868d4002b98SHong Zhang       idiag[i] = omega / (fshift + val[diag[i]]);
869d4002b98SHong Zhang     }
8709566063dSJacob Faibussowitsch     PetscCall(PetscLogFlops(2.0 * m));
871d4002b98SHong Zhang   }
87207425a8dSBarry Smith   a->idiagState = ((PetscObject)A)->state;
87307425a8dSBarry Smith   a->omega      = omega;
87407425a8dSBarry Smith   a->fshift     = fshift;
8753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
876d4002b98SHong Zhang }
877d4002b98SHong Zhang 
MatZeroEntries_SeqSELL(Mat A)878d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroEntries_SeqSELL(Mat A)
879d71ae5a4SJacob Faibussowitsch {
880d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
881d4002b98SHong Zhang 
882d4002b98SHong Zhang   PetscFunctionBegin;
8839566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(a->val, a->sliidx[a->totalslices]));
8843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
885d4002b98SHong Zhang }
886d4002b98SHong Zhang 
MatDestroy_SeqSELL(Mat A)887d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_SeqSELL(Mat A)
888d71ae5a4SJacob Faibussowitsch {
889d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
890d4002b98SHong Zhang 
891d4002b98SHong Zhang   PetscFunctionBegin;
8923ba16761SJacob Faibussowitsch   PetscCall(PetscLogObjectState((PetscObject)A, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT ", NZ=%" PetscInt_FMT, A->rmap->n, A->cmap->n, a->nz));
8939566063dSJacob Faibussowitsch   PetscCall(MatSeqXSELLFreeSELL(A, &a->val, &a->colidx));
8949566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&a->row));
8959566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&a->col));
8969566063dSJacob Faibussowitsch   PetscCall(PetscFree(a->diag));
8979566063dSJacob Faibussowitsch   PetscCall(PetscFree(a->rlen));
8989566063dSJacob Faibussowitsch   PetscCall(PetscFree(a->sliidx));
8999566063dSJacob Faibussowitsch   PetscCall(PetscFree3(a->idiag, a->mdiag, a->ssor_work));
9009566063dSJacob Faibussowitsch   PetscCall(PetscFree(a->solve_work));
9019566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&a->icol));
9029566063dSJacob Faibussowitsch   PetscCall(PetscFree(a->saved_values));
9039566063dSJacob Faibussowitsch   PetscCall(PetscFree2(a->getrowcols, a->getrowvals));
9049566063dSJacob Faibussowitsch   PetscCall(PetscFree(A->data));
905773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
90690d2215bSHong Zhang   PetscCall(PetscFree(a->chunk_slice_map));
90790d2215bSHong Zhang #endif
908d4002b98SHong Zhang 
9099566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)A, NULL));
9109566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatStoreValues_C", NULL));
9119566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatRetrieveValues_C", NULL));
9129566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLSetPreallocation_C", NULL));
9132e956fe4SStefano Zampini   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLGetArray_C", NULL));
9142e956fe4SStefano Zampini   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLRestoreArray_C", NULL));
915b5917f1bSHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatConvert_seqsell_seqaij_C", NULL));
9162d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA)
917b5917f1bSHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatConvert_seqsell_seqsellcuda_C", NULL));
9182d1451d4SHong Zhang #endif
919773bf0f6SHong Zhang #if defined(PETSC_HAVE_HIP)
920773bf0f6SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatConvert_seqsell_seqsellhip_C", NULL));
921773bf0f6SHong Zhang #endif
92207e43b41SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLGetFillRatio_C", NULL));
92307e43b41SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLGetMaxSliceWidth_C", NULL));
92407e43b41SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLGetAvgSliceWidth_C", NULL));
925b921024eSHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLGetVarSliceSize_C", NULL));
92607e43b41SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLSetSliceHeight_C", NULL));
9273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
928d4002b98SHong Zhang }
929d4002b98SHong Zhang 
MatSetOption_SeqSELL(Mat A,MatOption op,PetscBool flg)930d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_SeqSELL(Mat A, MatOption op, PetscBool flg)
931d71ae5a4SJacob Faibussowitsch {
932d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
933d4002b98SHong Zhang 
934d4002b98SHong Zhang   PetscFunctionBegin;
935d4002b98SHong Zhang   switch (op) {
936d71ae5a4SJacob Faibussowitsch   case MAT_ROW_ORIENTED:
937d71ae5a4SJacob Faibussowitsch     a->roworiented = flg;
938d71ae5a4SJacob Faibussowitsch     break;
939d71ae5a4SJacob Faibussowitsch   case MAT_KEEP_NONZERO_PATTERN:
940d71ae5a4SJacob Faibussowitsch     a->keepnonzeropattern = flg;
941d71ae5a4SJacob Faibussowitsch     break;
942d71ae5a4SJacob Faibussowitsch   case MAT_NEW_NONZERO_LOCATIONS:
943d71ae5a4SJacob Faibussowitsch     a->nonew = (flg ? 0 : 1);
944d71ae5a4SJacob Faibussowitsch     break;
945d71ae5a4SJacob Faibussowitsch   case MAT_NEW_NONZERO_LOCATION_ERR:
946d71ae5a4SJacob Faibussowitsch     a->nonew = (flg ? -1 : 0);
947d71ae5a4SJacob Faibussowitsch     break;
948d71ae5a4SJacob Faibussowitsch   case MAT_NEW_NONZERO_ALLOCATION_ERR:
949d71ae5a4SJacob Faibussowitsch     a->nonew = (flg ? -2 : 0);
950d71ae5a4SJacob Faibussowitsch     break;
951d71ae5a4SJacob Faibussowitsch   case MAT_UNUSED_NONZERO_LOCATION_ERR:
952d71ae5a4SJacob Faibussowitsch     a->nounused = (flg ? -1 : 0);
953d71ae5a4SJacob Faibussowitsch     break;
954d71ae5a4SJacob Faibussowitsch   default:
955888c827cSStefano Zampini     break;
956d4002b98SHong Zhang   }
9573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
958d4002b98SHong Zhang }
959d4002b98SHong Zhang 
MatGetDiagonal_SeqSELL(Mat A,Vec v)960d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDiagonal_SeqSELL(Mat A, Vec v)
961d71ae5a4SJacob Faibussowitsch {
962d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
963d4002b98SHong Zhang   PetscInt     i, j, n, shift;
964d4002b98SHong Zhang   PetscScalar *x, zero = 0.0;
965d4002b98SHong Zhang 
966d4002b98SHong Zhang   PetscFunctionBegin;
9679566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(v, &n));
96808401ef6SPierre Jolivet   PetscCheck(n == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Nonconforming matrix and vector");
969d4002b98SHong Zhang 
970d4002b98SHong Zhang   if (A->factortype == MAT_FACTOR_ILU || A->factortype == MAT_FACTOR_LU) {
971421480d9SBarry Smith     const PetscInt *diag;
972421480d9SBarry Smith 
973421480d9SBarry Smith     PetscCall(MatGetDiagonalMarkers_SeqSELL(A, &diag, NULL));
974421480d9SBarry Smith     PetscCall(VecGetArrayWrite(v, &x));
975d4002b98SHong Zhang     for (i = 0; i < n; i++) x[i] = 1.0 / a->val[diag[i]];
976421480d9SBarry Smith     PetscCall(VecRestoreArrayWrite(v, &x));
9773ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
978d4002b98SHong Zhang   }
979d4002b98SHong Zhang 
9809566063dSJacob Faibussowitsch   PetscCall(VecSet(v, zero));
9819566063dSJacob Faibussowitsch   PetscCall(VecGetArray(v, &x));
982d4002b98SHong Zhang   for (i = 0; i < n; i++) {                                     /* loop over rows */
98307e43b41SHong Zhang     shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */
984d4002b98SHong Zhang     x[i]  = 0;
985d4002b98SHong Zhang     for (j = 0; j < a->rlen[i]; j++) {
98607e43b41SHong Zhang       if (a->colidx[shift + a->sliceheight * j] == i) {
98707e43b41SHong Zhang         x[i] = a->val[shift + a->sliceheight * j];
988d4002b98SHong Zhang         break;
989d4002b98SHong Zhang       }
990d4002b98SHong Zhang     }
991d4002b98SHong Zhang   }
9929566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(v, &x));
9933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
994d4002b98SHong Zhang }
995d4002b98SHong Zhang 
MatDiagonalScale_SeqSELL(Mat A,Vec ll,Vec rr)996d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDiagonalScale_SeqSELL(Mat A, Vec ll, Vec rr)
997d71ae5a4SJacob Faibussowitsch {
998d4002b98SHong Zhang   Mat_SeqSELL       *a = (Mat_SeqSELL *)A->data;
999d4002b98SHong Zhang   const PetscScalar *l, *r;
1000d4002b98SHong Zhang   PetscInt           i, j, m, n, row;
1001d4002b98SHong Zhang 
1002d4002b98SHong Zhang   PetscFunctionBegin;
1003d4002b98SHong Zhang   if (ll) {
1004d4002b98SHong Zhang     /* The local size is used so that VecMPI can be passed to this routine
1005d4002b98SHong Zhang        by MatDiagonalScale_MPISELL */
10069566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll, &m));
100708401ef6SPierre Jolivet     PetscCheck(m == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left scaling vector wrong length");
10089566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(ll, &l));
1009d4002b98SHong Zhang     for (i = 0; i < a->totalslices; i++) {                            /* loop over slices */
101007e43b41SHong Zhang       if (i == a->totalslices - 1 && (A->rmap->n % a->sliceheight)) { /* if last slice has padding rows */
101107e43b41SHong Zhang         for (j = a->sliidx[i], row = 0; j < a->sliidx[i + 1]; j++, row = (row + 1) % a->sliceheight) {
101207e43b41SHong Zhang           if (row < (A->rmap->n % a->sliceheight)) a->val[j] *= l[a->sliceheight * i + row];
1013dab86139SHong Zhang         }
1014dab86139SHong Zhang       } else {
1015ac530a7eSPierre Jolivet         for (j = a->sliidx[i], row = 0; j < a->sliidx[i + 1]; j++, row = (row + 1) % a->sliceheight) a->val[j] *= l[a->sliceheight * i + row];
1016d4002b98SHong Zhang       }
1017dab86139SHong Zhang     }
10189566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(ll, &l));
10199566063dSJacob Faibussowitsch     PetscCall(PetscLogFlops(a->nz));
1020d4002b98SHong Zhang   }
1021d4002b98SHong Zhang   if (rr) {
10229566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr, &n));
102308401ef6SPierre Jolivet     PetscCheck(n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Right scaling vector wrong length");
10249566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(rr, &r));
1025d4002b98SHong Zhang     for (i = 0; i < a->totalslices; i++) {                            /* loop over slices */
102607e43b41SHong Zhang       if (i == a->totalslices - 1 && (A->rmap->n % a->sliceheight)) { /* if last slice has padding rows */
102707e43b41SHong Zhang         for (j = a->sliidx[i], row = 0; j < a->sliidx[i + 1]; j++, row = ((row + 1) % a->sliceheight)) {
102807e43b41SHong Zhang           if (row < (A->rmap->n % a->sliceheight)) a->val[j] *= r[a->colidx[j]];
1029dab86139SHong Zhang         }
1030dab86139SHong Zhang       } else {
1031ad540459SPierre Jolivet         for (j = a->sliidx[i]; j < a->sliidx[i + 1]; j++) a->val[j] *= r[a->colidx[j]];
1032d4002b98SHong Zhang       }
1033dab86139SHong Zhang     }
10349566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(rr, &r));
10359566063dSJacob Faibussowitsch     PetscCall(PetscLogFlops(a->nz));
1036d4002b98SHong Zhang   }
1037773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
10382d1451d4SHong Zhang   if (A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) A->offloadmask = PETSC_OFFLOAD_CPU;
10392d1451d4SHong Zhang #endif
10403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1041d4002b98SHong Zhang }
1042d4002b98SHong Zhang 
MatGetValues_SeqSELL(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[])1043d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetValues_SeqSELL(Mat A, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], PetscScalar v[])
1044d71ae5a4SJacob Faibussowitsch {
1045d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
1046d4002b98SHong Zhang   PetscInt    *cp, i, k, low, high, t, row, col, l;
1047d4002b98SHong Zhang   PetscInt     shift;
1048d4002b98SHong Zhang   MatScalar   *vp;
1049d4002b98SHong Zhang 
1050d4002b98SHong Zhang   PetscFunctionBegin;
105168aafef3SStefano Zampini   for (k = 0; k < m; k++) { /* loop over requested rows */
1052d4002b98SHong Zhang     row = im[k];
1053d4002b98SHong Zhang     if (row < 0) continue;
10546bdcaf15SBarry Smith     PetscCheck(row < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, row, A->rmap->n - 1);
105507e43b41SHong Zhang     shift = a->sliidx[row / a->sliceheight] + (row % a->sliceheight); /* starting index of the row */
1056d4002b98SHong Zhang     cp    = a->colidx + shift;                                        /* pointer to the row */
1057d4002b98SHong Zhang     vp    = a->val + shift;                                           /* pointer to the row */
105868aafef3SStefano Zampini     for (l = 0; l < n; l++) {                                         /* loop over requested columns */
1059d4002b98SHong Zhang       col = in[l];
1060d4002b98SHong Zhang       if (col < 0) continue;
10616bdcaf15SBarry Smith       PetscCheck(col < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: row %" PetscInt_FMT " max %" PetscInt_FMT, col, A->cmap->n - 1);
10629371c9d4SSatish Balay       high = a->rlen[row];
10639371c9d4SSatish Balay       low  = 0; /* assume unsorted */
1064d4002b98SHong Zhang       while (high - low > 5) {
1065d4002b98SHong Zhang         t = (low + high) / 2;
106607e43b41SHong Zhang         if (*(cp + a->sliceheight * t) > col) high = t;
1067d4002b98SHong Zhang         else low = t;
1068d4002b98SHong Zhang       }
1069d4002b98SHong Zhang       for (i = low; i < high; i++) {
107007e43b41SHong Zhang         if (*(cp + a->sliceheight * i) > col) break;
107107e43b41SHong Zhang         if (*(cp + a->sliceheight * i) == col) {
107207e43b41SHong Zhang           *v++ = *(vp + a->sliceheight * i);
1073d4002b98SHong Zhang           goto finished;
1074d4002b98SHong Zhang         }
1075d4002b98SHong Zhang       }
1076d4002b98SHong Zhang       *v++ = 0.0;
1077d4002b98SHong Zhang     finished:;
1078d4002b98SHong Zhang     }
1079d4002b98SHong Zhang   }
10803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1081d4002b98SHong Zhang }
1082d4002b98SHong Zhang 
MatView_SeqSELL_ASCII(Mat A,PetscViewer viewer)1083ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_SeqSELL_ASCII(Mat A, PetscViewer viewer)
1084d71ae5a4SJacob Faibussowitsch {
1085d4002b98SHong Zhang   Mat_SeqSELL      *a = (Mat_SeqSELL *)A->data;
1086d4002b98SHong Zhang   PetscInt          i, j, m = A->rmap->n, shift;
1087d4002b98SHong Zhang   const char       *name;
1088d4002b98SHong Zhang   PetscViewerFormat format;
1089d4002b98SHong Zhang 
1090d4002b98SHong Zhang   PetscFunctionBegin;
10919566063dSJacob Faibussowitsch   PetscCall(PetscViewerGetFormat(viewer, &format));
1092d4002b98SHong Zhang   if (format == PETSC_VIEWER_ASCII_MATLAB) {
1093d4002b98SHong Zhang     PetscInt nofinalvalue = 0;
1094d4002b98SHong Zhang     /*
10953a7d0413SPierre Jolivet     if (m && ((a->i[m] == a->i[m-1]) || (a->j[a->nz-1] != A->cmap->n-1))) nofinalvalue = 1;
1096d4002b98SHong Zhang     */
10979566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE));
10989566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "%% Size = %" PetscInt_FMT " %" PetscInt_FMT " \n", m, A->cmap->n));
10999566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "%% Nonzeros = %" PetscInt_FMT " \n", a->nz));
1100d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
11019566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "zzz = zeros(%" PetscInt_FMT ",4);\n", a->nz + nofinalvalue));
1102d4002b98SHong Zhang #else
11039566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "zzz = zeros(%" PetscInt_FMT ",3);\n", a->nz + nofinalvalue));
1104d4002b98SHong Zhang #endif
11059566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "zzz = [\n"));
1106d4002b98SHong Zhang 
1107d4002b98SHong Zhang     for (i = 0; i < m; i++) {
110807e43b41SHong Zhang       shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
1109d4002b98SHong Zhang       for (j = 0; j < a->rlen[i]; j++) {
1110d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
111107e43b41SHong Zhang         PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT "  %18.16e %18.16e\n", i + 1, a->colidx[shift + a->sliceheight * j] + 1, (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)PetscImaginaryPart(a->val[shift + a->sliceheight * j])));
1112d4002b98SHong Zhang #else
111307e43b41SHong Zhang         PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT "  %18.16e\n", i + 1, a->colidx[shift + a->sliceheight * j] + 1, (double)a->val[shift + a->sliceheight * j]));
1114d4002b98SHong Zhang #endif
1115d4002b98SHong Zhang       }
1116d4002b98SHong Zhang     }
1117d4002b98SHong Zhang     /*
1118d4002b98SHong Zhang     if (nofinalvalue) {
1119d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
11209566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT "  %18.16e %18.16e\n",m,A->cmap->n,0.,0.));
1121d4002b98SHong Zhang #else
11229566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT "  %18.16e\n",m,A->cmap->n,0.0));
1123d4002b98SHong Zhang #endif
1124d4002b98SHong Zhang     }
1125d4002b98SHong Zhang     */
11269566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)A, &name));
11279566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "];\n %s = spconvert(zzz);\n", name));
11289566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE));
1129d4002b98SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO || format == PETSC_VIEWER_ASCII_INFO) {
11303ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
1131d4002b98SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_COMMON) {
11329566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE));
1133d4002b98SHong Zhang     for (i = 0; i < m; i++) {
11349566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "row %" PetscInt_FMT ":", i));
113507e43b41SHong Zhang       shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
1136d4002b98SHong Zhang       for (j = 0; j < a->rlen[i]; j++) {
1137d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
113807e43b41SHong Zhang         if (PetscImaginaryPart(a->val[shift + a->sliceheight * j]) > 0.0 && PetscRealPart(a->val[shift + a->sliceheight * j]) != 0.0) {
113907e43b41SHong Zhang           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)PetscImaginaryPart(a->val[shift + a->sliceheight * j])));
114007e43b41SHong Zhang         } else if (PetscImaginaryPart(a->val[shift + a->sliceheight * j]) < 0.0 && PetscRealPart(a->val[shift + a->sliceheight * j]) != 0.0) {
114107e43b41SHong Zhang           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)-PetscImaginaryPart(a->val[shift + a->sliceheight * j])));
114207e43b41SHong Zhang         } else if (PetscRealPart(a->val[shift + a->sliceheight * j]) != 0.0) {
114307e43b41SHong Zhang           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j])));
1144d4002b98SHong Zhang         }
1145d4002b98SHong Zhang #else
114607e43b41SHong Zhang         if (a->val[shift + a->sliceheight * j] != 0.0) PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[shift + a->sliceheight * j], (double)a->val[shift + a->sliceheight * j]));
1147d4002b98SHong Zhang #endif
1148d4002b98SHong Zhang       }
11499566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "\n"));
1150d4002b98SHong Zhang     }
11519566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE));
1152d4002b98SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_DENSE) {
1153d4002b98SHong Zhang     PetscInt    cnt = 0, jcnt;
1154d4002b98SHong Zhang     PetscScalar value;
1155d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1156d4002b98SHong Zhang     PetscBool realonly = PETSC_TRUE;
1157d4002b98SHong Zhang     for (i = 0; i < a->sliidx[a->totalslices]; i++) {
1158d4002b98SHong Zhang       if (PetscImaginaryPart(a->val[i]) != 0.0) {
1159d4002b98SHong Zhang         realonly = PETSC_FALSE;
1160d4002b98SHong Zhang         break;
1161d4002b98SHong Zhang       }
1162d4002b98SHong Zhang     }
1163d4002b98SHong Zhang #endif
1164d4002b98SHong Zhang 
11659566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE));
1166d4002b98SHong Zhang     for (i = 0; i < m; i++) {
1167d4002b98SHong Zhang       jcnt  = 0;
116807e43b41SHong Zhang       shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
1169d4002b98SHong Zhang       for (j = 0; j < A->cmap->n; j++) {
117007e43b41SHong Zhang         if (jcnt < a->rlen[i] && j == a->colidx[shift + a->sliceheight * j]) {
1171d4002b98SHong Zhang           value = a->val[cnt++];
1172d4002b98SHong Zhang           jcnt++;
1173d4002b98SHong Zhang         } else {
1174d4002b98SHong Zhang           value = 0.0;
1175d4002b98SHong Zhang         }
1176d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1177d4002b98SHong Zhang         if (realonly) {
11789566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(viewer, " %7.5e ", (double)PetscRealPart(value)));
1179d4002b98SHong Zhang         } else {
11809566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(viewer, " %7.5e+%7.5e i ", (double)PetscRealPart(value), (double)PetscImaginaryPart(value)));
1181d4002b98SHong Zhang         }
1182d4002b98SHong Zhang #else
11839566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, " %7.5e ", (double)value));
1184d4002b98SHong Zhang #endif
1185d4002b98SHong Zhang       }
11869566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "\n"));
1187d4002b98SHong Zhang     }
11889566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE));
1189d4002b98SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_MATRIXMARKET) {
1190d4002b98SHong Zhang     PetscInt fshift = 1;
11919566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE));
1192d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
11939566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "%%%%MatrixMarket matrix coordinate complex general\n"));
1194d4002b98SHong Zhang #else
11959566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "%%%%MatrixMarket matrix coordinate real general\n"));
1196d4002b98SHong Zhang #endif
11979566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT "\n", m, A->cmap->n, a->nz));
1198d4002b98SHong Zhang     for (i = 0; i < m; i++) {
119907e43b41SHong Zhang       shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
1200d4002b98SHong Zhang       for (j = 0; j < a->rlen[i]; j++) {
1201d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
120207e43b41SHong Zhang         PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT " %g %g\n", i + fshift, a->colidx[shift + a->sliceheight * j] + fshift, (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)PetscImaginaryPart(a->val[shift + a->sliceheight * j])));
1203d4002b98SHong Zhang #else
120407e43b41SHong Zhang         PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT " %g\n", i + fshift, a->colidx[shift + a->sliceheight * j] + fshift, (double)a->val[shift + a->sliceheight * j]));
1205d4002b98SHong Zhang #endif
1206d4002b98SHong Zhang       }
1207d4002b98SHong Zhang     }
12089566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE));
120968aafef3SStefano Zampini   } else if (format == PETSC_VIEWER_NATIVE) {
121068aafef3SStefano Zampini     for (i = 0; i < a->totalslices; i++) { /* loop over slices */
121168aafef3SStefano Zampini       PetscInt row;
12129566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "slice %" PetscInt_FMT ": %" PetscInt_FMT " %" PetscInt_FMT "\n", i, a->sliidx[i], a->sliidx[i + 1]));
121307e43b41SHong Zhang       for (j = a->sliidx[i], row = 0; j < a->sliidx[i + 1]; j++, row = (row + 1) % a->sliceheight) {
121468aafef3SStefano Zampini #if defined(PETSC_USE_COMPLEX)
121568aafef3SStefano Zampini         if (PetscImaginaryPart(a->val[j]) > 0.0) {
121607e43b41SHong Zhang           PetscCall(PetscViewerASCIIPrintf(viewer, "  %" PetscInt_FMT " %" PetscInt_FMT " %g + %g i\n", a->sliceheight * i + row, a->colidx[j], (double)PetscRealPart(a->val[j]), (double)PetscImaginaryPart(a->val[j])));
121768aafef3SStefano Zampini         } else if (PetscImaginaryPart(a->val[j]) < 0.0) {
121807e43b41SHong Zhang           PetscCall(PetscViewerASCIIPrintf(viewer, "  %" PetscInt_FMT " %" PetscInt_FMT " %g - %g i\n", a->sliceheight * i + row, a->colidx[j], (double)PetscRealPart(a->val[j]), -(double)PetscImaginaryPart(a->val[j])));
121968aafef3SStefano Zampini         } else {
122007e43b41SHong Zhang           PetscCall(PetscViewerASCIIPrintf(viewer, "  %" PetscInt_FMT " %" PetscInt_FMT " %g\n", a->sliceheight * i + row, a->colidx[j], (double)PetscRealPart(a->val[j])));
122168aafef3SStefano Zampini         }
122268aafef3SStefano Zampini #else
122307e43b41SHong Zhang         PetscCall(PetscViewerASCIIPrintf(viewer, "  %" PetscInt_FMT " %" PetscInt_FMT " %g\n", a->sliceheight * i + row, a->colidx[j], (double)a->val[j]));
122468aafef3SStefano Zampini #endif
122568aafef3SStefano Zampini       }
122668aafef3SStefano Zampini     }
1227d4002b98SHong Zhang   } else {
12289566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE));
1229d4002b98SHong Zhang     if (A->factortype) {
1230d4002b98SHong Zhang       for (i = 0; i < m; i++) {
123107e43b41SHong Zhang         shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
12329566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "row %" PetscInt_FMT ":", i));
1233d4002b98SHong Zhang         /* L part */
123407e43b41SHong Zhang         for (j = shift; j < a->diag[i]; j += a->sliceheight) {
1235d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
123607e43b41SHong Zhang           if (PetscImaginaryPart(a->val[shift + a->sliceheight * j]) > 0.0) {
12379566063dSJacob Faibussowitsch             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[j], (double)PetscRealPart(a->val[j]), (double)PetscImaginaryPart(a->val[j])));
123807e43b41SHong Zhang           } else if (PetscImaginaryPart(a->val[shift + a->sliceheight * j]) < 0.0) {
12399566063dSJacob Faibussowitsch             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[j], (double)PetscRealPart(a->val[j]), (double)(-PetscImaginaryPart(a->val[j]))));
1240d4002b98SHong Zhang           } else {
12419566063dSJacob Faibussowitsch             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)PetscRealPart(a->val[j])));
1242d4002b98SHong Zhang           }
1243d4002b98SHong Zhang #else
12449566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)a->val[j]));
1245d4002b98SHong Zhang #endif
1246d4002b98SHong Zhang         }
1247d4002b98SHong Zhang         /* diagonal */
1248d4002b98SHong Zhang         j = a->diag[i];
1249d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1250d4002b98SHong Zhang         if (PetscImaginaryPart(a->val[j]) > 0.0) {
12519566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[j], (double)PetscRealPart(1.0 / a->val[j]), (double)PetscImaginaryPart(1.0 / a->val[j])));
1252d4002b98SHong Zhang         } else if (PetscImaginaryPart(a->val[j]) < 0.0) {
12539566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[j], (double)PetscRealPart(1.0 / a->val[j]), (double)(-PetscImaginaryPart(1.0 / a->val[j]))));
1254d4002b98SHong Zhang         } else {
12559566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)PetscRealPart(1.0 / a->val[j])));
1256d4002b98SHong Zhang         }
1257d4002b98SHong Zhang #else
1258835f2295SStefano Zampini         PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)(1 / a->val[j])));
1259d4002b98SHong Zhang #endif
1260d4002b98SHong Zhang 
1261d4002b98SHong Zhang         /* U part */
126207e43b41SHong Zhang         for (j = a->diag[i] + 1; j < shift + a->sliceheight * a->rlen[i]; j += a->sliceheight) {
1263d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1264d4002b98SHong Zhang           if (PetscImaginaryPart(a->val[j]) > 0.0) {
12659566063dSJacob Faibussowitsch             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[j], (double)PetscRealPart(a->val[j]), (double)PetscImaginaryPart(a->val[j])));
1266d4002b98SHong Zhang           } else if (PetscImaginaryPart(a->val[j]) < 0.0) {
12679566063dSJacob Faibussowitsch             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[j], (double)PetscRealPart(a->val[j]), (double)(-PetscImaginaryPart(a->val[j]))));
1268d4002b98SHong Zhang           } else {
12699566063dSJacob Faibussowitsch             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)PetscRealPart(a->val[j])));
1270d4002b98SHong Zhang           }
1271d4002b98SHong Zhang #else
12729566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)a->val[j]));
1273d4002b98SHong Zhang #endif
1274d4002b98SHong Zhang         }
12759566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "\n"));
1276d4002b98SHong Zhang       }
1277d4002b98SHong Zhang     } else {
1278d4002b98SHong Zhang       for (i = 0; i < m; i++) {
127907e43b41SHong Zhang         shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
12809566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "row %" PetscInt_FMT ":", i));
1281d4002b98SHong Zhang         for (j = 0; j < a->rlen[i]; j++) {
1282d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1283d4002b98SHong Zhang           if (PetscImaginaryPart(a->val[j]) > 0.0) {
128407e43b41SHong Zhang             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)PetscImaginaryPart(a->val[shift + a->sliceheight * j])));
1285d4002b98SHong Zhang           } else if (PetscImaginaryPart(a->val[j]) < 0.0) {
128607e43b41SHong Zhang             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)-PetscImaginaryPart(a->val[shift + a->sliceheight * j])));
1287d4002b98SHong Zhang           } else {
128807e43b41SHong Zhang             PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j])));
1289d4002b98SHong Zhang           }
1290d4002b98SHong Zhang #else
129107e43b41SHong Zhang           PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[shift + a->sliceheight * j], (double)a->val[shift + a->sliceheight * j]));
1292d4002b98SHong Zhang #endif
1293d4002b98SHong Zhang         }
12949566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "\n"));
1295d4002b98SHong Zhang       }
1296d4002b98SHong Zhang     }
12979566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE));
1298d4002b98SHong Zhang   }
12999566063dSJacob Faibussowitsch   PetscCall(PetscViewerFlush(viewer));
13003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1301d4002b98SHong Zhang }
1302d4002b98SHong Zhang 
1303d4002b98SHong Zhang #include <petscdraw.h>
MatView_SeqSELL_Draw_Zoom(PetscDraw draw,void * Aa)1304ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_SeqSELL_Draw_Zoom(PetscDraw draw, void *Aa)
1305d71ae5a4SJacob Faibussowitsch {
1306d4002b98SHong Zhang   Mat               A = (Mat)Aa;
1307d4002b98SHong Zhang   Mat_SeqSELL      *a = (Mat_SeqSELL *)A->data;
1308d4002b98SHong Zhang   PetscInt          i, j, m = A->rmap->n, shift;
1309d4002b98SHong Zhang   int               color;
1310d4002b98SHong Zhang   PetscReal         xl, yl, xr, yr, x_l, x_r, y_l, y_r;
1311d4002b98SHong Zhang   PetscViewer       viewer;
1312d4002b98SHong Zhang   PetscViewerFormat format;
1313d4002b98SHong Zhang 
1314d4002b98SHong Zhang   PetscFunctionBegin;
13159566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)A, "Zoomviewer", (PetscObject *)&viewer));
13169566063dSJacob Faibussowitsch   PetscCall(PetscViewerGetFormat(viewer, &format));
13179566063dSJacob Faibussowitsch   PetscCall(PetscDrawGetCoordinates(draw, &xl, &yl, &xr, &yr));
1318d4002b98SHong Zhang 
1319d4002b98SHong Zhang   /* loop over matrix elements drawing boxes */
1320d4002b98SHong Zhang 
1321d4002b98SHong Zhang   if (format != PETSC_VIEWER_DRAW_CONTOUR) {
1322d0609cedSBarry Smith     PetscDrawCollectiveBegin(draw);
1323d4002b98SHong Zhang     /* Blue for negative, Cyan for zero and  Red for positive */
1324d4002b98SHong Zhang     color = PETSC_DRAW_BLUE;
1325d4002b98SHong Zhang     for (i = 0; i < m; i++) {
132607e43b41SHong Zhang       shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */
13279371c9d4SSatish Balay       y_l   = m - i - 1.0;
13289371c9d4SSatish Balay       y_r   = y_l + 1.0;
1329d4002b98SHong Zhang       for (j = 0; j < a->rlen[i]; j++) {
133007e43b41SHong Zhang         x_l = a->colidx[shift + a->sliceheight * j];
13319371c9d4SSatish Balay         x_r = x_l + 1.0;
133207e43b41SHong Zhang         if (PetscRealPart(a->val[shift + a->sliceheight * j]) >= 0.) continue;
13339566063dSJacob Faibussowitsch         PetscCall(PetscDrawRectangle(draw, x_l, y_l, x_r, y_r, color, color, color, color));
1334d4002b98SHong Zhang       }
1335d4002b98SHong Zhang     }
1336d4002b98SHong Zhang     color = PETSC_DRAW_CYAN;
1337d4002b98SHong Zhang     for (i = 0; i < m; i++) {
133807e43b41SHong Zhang       shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
13399371c9d4SSatish Balay       y_l   = m - i - 1.0;
13409371c9d4SSatish Balay       y_r   = y_l + 1.0;
1341d4002b98SHong Zhang       for (j = 0; j < a->rlen[i]; j++) {
134207e43b41SHong Zhang         x_l = a->colidx[shift + a->sliceheight * j];
13439371c9d4SSatish Balay         x_r = x_l + 1.0;
134407e43b41SHong Zhang         if (a->val[shift + a->sliceheight * j] != 0.) continue;
13459566063dSJacob Faibussowitsch         PetscCall(PetscDrawRectangle(draw, x_l, y_l, x_r, y_r, color, color, color, color));
1346d4002b98SHong Zhang       }
1347d4002b98SHong Zhang     }
1348d4002b98SHong Zhang     color = PETSC_DRAW_RED;
1349d4002b98SHong Zhang     for (i = 0; i < m; i++) {
135007e43b41SHong Zhang       shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
13519371c9d4SSatish Balay       y_l   = m - i - 1.0;
13529371c9d4SSatish Balay       y_r   = y_l + 1.0;
1353d4002b98SHong Zhang       for (j = 0; j < a->rlen[i]; j++) {
135407e43b41SHong Zhang         x_l = a->colidx[shift + a->sliceheight * j];
13559371c9d4SSatish Balay         x_r = x_l + 1.0;
135607e43b41SHong Zhang         if (PetscRealPart(a->val[shift + a->sliceheight * j]) <= 0.) continue;
13579566063dSJacob Faibussowitsch         PetscCall(PetscDrawRectangle(draw, x_l, y_l, x_r, y_r, color, color, color, color));
1358d4002b98SHong Zhang       }
1359d4002b98SHong Zhang     }
1360d0609cedSBarry Smith     PetscDrawCollectiveEnd(draw);
1361d4002b98SHong Zhang   } else {
1362d4002b98SHong Zhang     /* use contour shading to indicate magnitude of values */
1363d4002b98SHong Zhang     /* first determine max of all nonzero values */
1364d4002b98SHong Zhang     PetscReal minv = 0.0, maxv = 0.0;
1365d4002b98SHong Zhang     PetscInt  count = 0;
1366d4002b98SHong Zhang     PetscDraw popup;
1367d4002b98SHong Zhang     for (i = 0; i < a->sliidx[a->totalslices]; i++) {
1368d4002b98SHong Zhang       if (PetscAbsScalar(a->val[i]) > maxv) maxv = PetscAbsScalar(a->val[i]);
1369d4002b98SHong Zhang     }
1370d4002b98SHong Zhang     if (minv >= maxv) maxv = minv + PETSC_SMALL;
13719566063dSJacob Faibussowitsch     PetscCall(PetscDrawGetPopup(draw, &popup));
13729566063dSJacob Faibussowitsch     PetscCall(PetscDrawScalePopup(popup, minv, maxv));
1373d4002b98SHong Zhang 
1374d0609cedSBarry Smith     PetscDrawCollectiveBegin(draw);
1375d4002b98SHong Zhang     for (i = 0; i < m; i++) {
137607e43b41SHong Zhang       shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
1377d4002b98SHong Zhang       y_l   = m - i - 1.0;
1378d4002b98SHong Zhang       y_r   = y_l + 1.0;
1379d4002b98SHong Zhang       for (j = 0; j < a->rlen[i]; j++) {
138007e43b41SHong Zhang         x_l   = a->colidx[shift + a->sliceheight * j];
1381d4002b98SHong Zhang         x_r   = x_l + 1.0;
1382d4002b98SHong Zhang         color = PetscDrawRealToColor(PetscAbsScalar(a->val[count]), minv, maxv);
13839566063dSJacob Faibussowitsch         PetscCall(PetscDrawRectangle(draw, x_l, y_l, x_r, y_r, color, color, color, color));
1384d4002b98SHong Zhang         count++;
1385d4002b98SHong Zhang       }
1386d4002b98SHong Zhang     }
1387d0609cedSBarry Smith     PetscDrawCollectiveEnd(draw);
1388d4002b98SHong Zhang   }
13893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1390d4002b98SHong Zhang }
1391d4002b98SHong Zhang 
1392d4002b98SHong Zhang #include <petscdraw.h>
MatView_SeqSELL_Draw(Mat A,PetscViewer viewer)1393ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_SeqSELL_Draw(Mat A, PetscViewer viewer)
1394d71ae5a4SJacob Faibussowitsch {
1395d4002b98SHong Zhang   PetscDraw draw;
1396d4002b98SHong Zhang   PetscReal xr, yr, xl, yl, h, w;
1397d4002b98SHong Zhang   PetscBool isnull;
1398d4002b98SHong Zhang 
1399d4002b98SHong Zhang   PetscFunctionBegin;
14009566063dSJacob Faibussowitsch   PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
14019566063dSJacob Faibussowitsch   PetscCall(PetscDrawIsNull(draw, &isnull));
14023ba16761SJacob Faibussowitsch   if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
1403d4002b98SHong Zhang 
14049371c9d4SSatish Balay   xr = A->cmap->n;
14059371c9d4SSatish Balay   yr = A->rmap->n;
14069371c9d4SSatish Balay   h  = yr / 10.0;
14079371c9d4SSatish Balay   w  = xr / 10.0;
14089371c9d4SSatish Balay   xr += w;
14099371c9d4SSatish Balay   yr += h;
14109371c9d4SSatish Balay   xl = -w;
14119371c9d4SSatish Balay   yl = -h;
14129566063dSJacob Faibussowitsch   PetscCall(PetscDrawSetCoordinates(draw, xl, yl, xr, yr));
14139566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)A, "Zoomviewer", (PetscObject)viewer));
14149566063dSJacob Faibussowitsch   PetscCall(PetscDrawZoom(draw, MatView_SeqSELL_Draw_Zoom, A));
14159566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)A, "Zoomviewer", NULL));
14169566063dSJacob Faibussowitsch   PetscCall(PetscDrawSave(draw));
14173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1418d4002b98SHong Zhang }
1419d4002b98SHong Zhang 
MatView_SeqSELL(Mat A,PetscViewer viewer)1420d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_SeqSELL(Mat A, PetscViewer viewer)
1421d71ae5a4SJacob Faibussowitsch {
14229f196a02SMartin Diehl   PetscBool isascii, isbinary, isdraw;
1423d4002b98SHong Zhang 
1424d4002b98SHong Zhang   PetscFunctionBegin;
14259f196a02SMartin Diehl   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii));
14269566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
14279566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
14289f196a02SMartin Diehl   if (isascii) {
14299566063dSJacob Faibussowitsch     PetscCall(MatView_SeqSELL_ASCII(A, viewer));
1430d4002b98SHong Zhang   } else if (isbinary) {
14319566063dSJacob Faibussowitsch     /* PetscCall(MatView_SeqSELL_Binary(A,viewer)); */
14321baa6e33SBarry Smith   } else if (isdraw) PetscCall(MatView_SeqSELL_Draw(A, viewer));
14333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1434d4002b98SHong Zhang }
1435d4002b98SHong Zhang 
MatAssemblyEnd_SeqSELL(Mat A,MatAssemblyType mode)1436d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_SeqSELL(Mat A, MatAssemblyType mode)
1437d71ae5a4SJacob Faibussowitsch {
1438d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
1439d4002b98SHong Zhang   PetscInt     i, shift, row_in_slice, row, nrow, *cp, lastcol, j, k;
1440d4002b98SHong Zhang   MatScalar   *vp;
1441773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
144290d2215bSHong Zhang   PetscInt totalchunks = 0;
144390d2215bSHong Zhang #endif
1444d4002b98SHong Zhang 
1445d4002b98SHong Zhang   PetscFunctionBegin;
14463ba16761SJacob Faibussowitsch   if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(PETSC_SUCCESS);
1447d4002b98SHong Zhang   /* To do: compress out the unused elements */
14489566063dSJacob Faibussowitsch   PetscCall(PetscInfo(A, "Matrix size: %" PetscInt_FMT " X %" PetscInt_FMT "; storage space: %" PetscInt_FMT " allocated %" PetscInt_FMT " used (%" PetscInt_FMT " nonzeros+%" PetscInt_FMT " paddedzeros)\n", A->rmap->n, A->cmap->n, a->maxallocmat, a->sliidx[a->totalslices], a->nz, a->sliidx[a->totalslices] - a->nz));
14499566063dSJacob Faibussowitsch   PetscCall(PetscInfo(A, "Number of mallocs during MatSetValues() is %" PetscInt_FMT "\n", a->reallocs));
14509566063dSJacob Faibussowitsch   PetscCall(PetscInfo(A, "Maximum nonzeros in any row is %" PetscInt_FMT "\n", a->rlenmax));
14512d1451d4SHong Zhang   a->nonzerorowcnt = 0;
1452d4002b98SHong Zhang   /* Set unused slots for column indices to last valid column index. Set unused slots for values to zero. This allows for a use of unmasked intrinsics -> higher performance */
1453d4002b98SHong Zhang   for (i = 0; i < a->totalslices; ++i) {
1454d4002b98SHong Zhang     shift = a->sliidx[i];                                                   /* starting index of the slice */
14558e3a54c0SPierre Jolivet     cp    = PetscSafePointerPlusOffset(a->colidx, shift);                   /* pointer to the column indices of the slice */
14568e3a54c0SPierre Jolivet     vp    = PetscSafePointerPlusOffset(a->val, shift);                      /* pointer to the nonzero values of the slice */
145707e43b41SHong Zhang     for (row_in_slice = 0; row_in_slice < a->sliceheight; ++row_in_slice) { /* loop over rows in the slice */
145807e43b41SHong Zhang       row  = a->sliceheight * i + row_in_slice;
1459d4002b98SHong Zhang       nrow = a->rlen[row]; /* number of nonzeros in row */
1460d4002b98SHong Zhang       /*
1461d4002b98SHong Zhang         Search for the nearest nonzero. Normally setting the index to zero may cause extra communication.
1462d4002b98SHong Zhang         But if the entire slice are empty, it is fine to use 0 since the index will not be loaded.
1463d4002b98SHong Zhang       */
1464d4002b98SHong Zhang       lastcol = 0;
1465d4002b98SHong Zhang       if (nrow > 0) { /* nonempty row */
14662d1451d4SHong Zhang         a->nonzerorowcnt++;
146707e43b41SHong Zhang         lastcol = cp[a->sliceheight * (nrow - 1) + row_in_slice]; /* use the index from the last nonzero at current row */
1468aaa8cc7dSPierre Jolivet       } else if (!row_in_slice) {                                 /* first row of the correct slice is empty */
146907e43b41SHong Zhang         for (j = 1; j < a->sliceheight; j++) {
147007e43b41SHong Zhang           if (a->rlen[a->sliceheight * i + j]) {
1471d4002b98SHong Zhang             lastcol = cp[j];
1472d4002b98SHong Zhang             break;
1473d4002b98SHong Zhang           }
1474d4002b98SHong Zhang         }
1475d4002b98SHong Zhang       } else {
1476d4002b98SHong Zhang         if (a->sliidx[i + 1] != shift) lastcol = cp[row_in_slice - 1]; /* use the index from the previous row */
1477d4002b98SHong Zhang       }
1478d4002b98SHong Zhang 
147907e43b41SHong Zhang       for (k = nrow; k < (a->sliidx[i + 1] - shift) / a->sliceheight; ++k) {
148007e43b41SHong Zhang         cp[a->sliceheight * k + row_in_slice] = lastcol;
148107e43b41SHong Zhang         vp[a->sliceheight * k + row_in_slice] = (MatScalar)0;
1482d4002b98SHong Zhang       }
1483d4002b98SHong Zhang     }
1484d4002b98SHong Zhang   }
1485d4002b98SHong Zhang 
1486d4002b98SHong Zhang   A->info.mallocs += a->reallocs;
1487d4002b98SHong Zhang   a->reallocs = 0;
1488d4002b98SHong Zhang 
1489773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
149090d2215bSHong Zhang   if (!a->chunksize && a->totalslices) {
149190d2215bSHong Zhang     a->chunksize = 64;
149290d2215bSHong Zhang     while (a->chunksize < 1024 && 2 * a->chunksize <= a->sliidx[a->totalslices] / a->totalslices) a->chunksize *= 2;
149390d2215bSHong Zhang     totalchunks = 1 + (a->sliidx[a->totalslices] - 1) / a->chunksize;
149490d2215bSHong Zhang   }
149590d2215bSHong Zhang   if (totalchunks != a->totalchunks) {
149690d2215bSHong Zhang     PetscCall(PetscFree(a->chunk_slice_map));
149790d2215bSHong Zhang     PetscCall(PetscMalloc1(totalchunks, &a->chunk_slice_map));
149890d2215bSHong Zhang     a->totalchunks = totalchunks;
149990d2215bSHong Zhang   }
150090d2215bSHong Zhang   j = 0;
150190d2215bSHong Zhang   for (i = 0; i < totalchunks; i++) {
150290d2215bSHong Zhang     while (a->sliidx[j + 1] <= i * a->chunksize && j < a->totalslices) j++;
150390d2215bSHong Zhang     a->chunk_slice_map[i] = j;
150490d2215bSHong Zhang   }
150590d2215bSHong Zhang #endif
15063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1507d4002b98SHong Zhang }
1508d4002b98SHong Zhang 
MatGetInfo_SeqSELL(Mat A,MatInfoType flag,MatInfo * info)1509d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetInfo_SeqSELL(Mat A, MatInfoType flag, MatInfo *info)
1510d71ae5a4SJacob Faibussowitsch {
1511d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
1512d4002b98SHong Zhang 
1513d4002b98SHong Zhang   PetscFunctionBegin;
1514d4002b98SHong Zhang   info->block_size   = 1.0;
15153966268fSBarry Smith   info->nz_allocated = a->maxallocmat;
15163966268fSBarry Smith   info->nz_used      = a->sliidx[a->totalslices]; /* include padding zeros */
15173966268fSBarry Smith   info->nz_unneeded  = (a->maxallocmat - a->sliidx[a->totalslices]);
15183966268fSBarry Smith   info->assemblies   = A->num_ass;
15193966268fSBarry Smith   info->mallocs      = A->info.mallocs;
15204dfa11a4SJacob Faibussowitsch   info->memory       = 0; /* REVIEW ME */
1521d4002b98SHong Zhang   if (A->factortype) {
1522d4002b98SHong Zhang     info->fill_ratio_given  = A->info.fill_ratio_given;
1523d4002b98SHong Zhang     info->fill_ratio_needed = A->info.fill_ratio_needed;
1524d4002b98SHong Zhang     info->factor_mallocs    = A->info.factor_mallocs;
1525d4002b98SHong Zhang   } else {
1526d4002b98SHong Zhang     info->fill_ratio_given  = 0;
1527d4002b98SHong Zhang     info->fill_ratio_needed = 0;
1528d4002b98SHong Zhang     info->factor_mallocs    = 0;
1529d4002b98SHong Zhang   }
15303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1531d4002b98SHong Zhang }
1532d4002b98SHong Zhang 
MatSetValues_SeqSELL(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is)1533d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_SeqSELL(Mat A, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode is)
1534d71ae5a4SJacob Faibussowitsch {
1535d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
1536d4002b98SHong Zhang   PetscInt     shift, i, k, l, low, high, t, ii, row, col, nrow;
1537d4002b98SHong Zhang   PetscInt    *cp, nonew = a->nonew, lastcol = -1;
1538d4002b98SHong Zhang   MatScalar   *vp, value;
1539773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
15402d1451d4SHong Zhang   PetscBool inserted = PETSC_FALSE;
15414e58db63SHong Zhang   PetscInt  mul      = DEVICE_MEM_ALIGN / a->sliceheight;
15422d1451d4SHong Zhang #endif
1543d4002b98SHong Zhang 
1544d4002b98SHong Zhang   PetscFunctionBegin;
1545d4002b98SHong Zhang   for (k = 0; k < m; k++) { /* loop over added rows */
1546d4002b98SHong Zhang     row = im[k];
1547d4002b98SHong Zhang     if (row < 0) continue;
15486bdcaf15SBarry Smith     PetscCheck(row < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, row, A->rmap->n - 1);
154907e43b41SHong Zhang     shift = a->sliidx[row / a->sliceheight] + row % a->sliceheight; /* starting index of the row */
1550d4002b98SHong Zhang     cp    = a->colidx + shift;                                      /* pointer to the row */
1551d4002b98SHong Zhang     vp    = a->val + shift;                                         /* pointer to the row */
1552d4002b98SHong Zhang     nrow  = a->rlen[row];
1553d4002b98SHong Zhang     low   = 0;
1554d4002b98SHong Zhang     high  = nrow;
1555d4002b98SHong Zhang 
1556d4002b98SHong Zhang     for (l = 0; l < n; l++) { /* loop over added columns */
1557d4002b98SHong Zhang       col = in[l];
1558d4002b98SHong Zhang       if (col < 0) continue;
15596bdcaf15SBarry Smith       PetscCheck(col < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Col too large: row %" PetscInt_FMT " max %" PetscInt_FMT, col, A->cmap->n - 1);
1560d4002b98SHong Zhang       if (a->roworiented) {
1561d4002b98SHong Zhang         value = v[l + k * n];
1562d4002b98SHong Zhang       } else {
1563d4002b98SHong Zhang         value = v[k + l * m];
1564d4002b98SHong Zhang       }
1565d4002b98SHong Zhang       if ((value == 0.0 && a->ignorezeroentries) && (is == ADD_VALUES)) continue;
1566d4002b98SHong Zhang 
1567ed73aabaSBarry Smith       /* search in this row for the specified column, i indicates the column to be set */
1568d4002b98SHong Zhang       if (col <= lastcol) low = 0;
1569d4002b98SHong Zhang       else high = nrow;
1570d4002b98SHong Zhang       lastcol = col;
1571d4002b98SHong Zhang       while (high - low > 5) {
1572d4002b98SHong Zhang         t = (low + high) / 2;
157307e43b41SHong Zhang         if (*(cp + a->sliceheight * t) > col) high = t;
1574d4002b98SHong Zhang         else low = t;
1575d4002b98SHong Zhang       }
1576d4002b98SHong Zhang       for (i = low; i < high; i++) {
157707e43b41SHong Zhang         if (*(cp + a->sliceheight * i) > col) break;
157807e43b41SHong Zhang         if (*(cp + a->sliceheight * i) == col) {
157907e43b41SHong Zhang           if (is == ADD_VALUES) *(vp + a->sliceheight * i) += value;
158007e43b41SHong Zhang           else *(vp + a->sliceheight * i) = value;
1581773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
15822d1451d4SHong Zhang           inserted = PETSC_TRUE;
15832d1451d4SHong Zhang #endif
1584d4002b98SHong Zhang           low = i + 1;
1585d4002b98SHong Zhang           goto noinsert;
1586d4002b98SHong Zhang         }
1587d4002b98SHong Zhang       }
1588d4002b98SHong Zhang       if (value == 0.0 && a->ignorezeroentries) goto noinsert;
1589d4002b98SHong Zhang       if (nonew == 1) goto noinsert;
159008401ef6SPierre Jolivet       PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", row, col);
1591773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
15924e58db63SHong Zhang       MatSeqXSELLReallocateSELL(A, A->rmap->n, 1, nrow, a->sliidx, a->sliceheight, row / a->sliceheight, row, col, a->colidx, a->val, cp, vp, nonew, MatScalar, mul);
15934e58db63SHong Zhang #else
1594d4002b98SHong Zhang       /* If the current row length exceeds the slice width (e.g. nrow==slice_width), allocate a new space, otherwise do nothing */
15954e58db63SHong Zhang       MatSeqXSELLReallocateSELL(A, A->rmap->n, 1, nrow, a->sliidx, a->sliceheight, row / a->sliceheight, row, col, a->colidx, a->val, cp, vp, nonew, MatScalar, 1);
15964e58db63SHong Zhang #endif
1597d4002b98SHong Zhang       /* add the new nonzero to the high position, shift the remaining elements in current row to the right by one slot */
1598d4002b98SHong Zhang       for (ii = nrow - 1; ii >= i; ii--) {
159907e43b41SHong Zhang         *(cp + a->sliceheight * (ii + 1)) = *(cp + a->sliceheight * ii);
160007e43b41SHong Zhang         *(vp + a->sliceheight * (ii + 1)) = *(vp + a->sliceheight * ii);
1601d4002b98SHong Zhang       }
1602d4002b98SHong Zhang       a->rlen[row]++;
160307e43b41SHong Zhang       *(cp + a->sliceheight * i) = col;
160407e43b41SHong Zhang       *(vp + a->sliceheight * i) = value;
1605d4002b98SHong Zhang       a->nz++;
1606773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
16072d1451d4SHong Zhang       inserted = PETSC_TRUE;
16082d1451d4SHong Zhang #endif
16099371c9d4SSatish Balay       low = i + 1;
16109371c9d4SSatish Balay       high++;
16119371c9d4SSatish Balay       nrow++;
1612d4002b98SHong Zhang     noinsert:;
1613d4002b98SHong Zhang     }
1614d4002b98SHong Zhang     a->rlen[row] = nrow;
1615d4002b98SHong Zhang   }
1616773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
16172d1451d4SHong Zhang   if (A->offloadmask != PETSC_OFFLOAD_UNALLOCATED && inserted) A->offloadmask = PETSC_OFFLOAD_CPU;
16182d1451d4SHong Zhang #endif
16193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1620d4002b98SHong Zhang }
1621d4002b98SHong Zhang 
MatCopy_SeqSELL(Mat A,Mat B,MatStructure str)1622d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCopy_SeqSELL(Mat A, Mat B, MatStructure str)
1623d71ae5a4SJacob Faibussowitsch {
1624d4002b98SHong Zhang   PetscFunctionBegin;
1625d4002b98SHong Zhang   /* If the two matrices have the same copy implementation, use fast copy. */
1626d4002b98SHong Zhang   if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) {
1627d4002b98SHong Zhang     Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
1628d4002b98SHong Zhang     Mat_SeqSELL *b = (Mat_SeqSELL *)B->data;
1629d4002b98SHong Zhang 
163008401ef6SPierre Jolivet     PetscCheck(a->sliidx[a->totalslices] == b->sliidx[b->totalslices], PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Number of nonzeros in two matrices are different");
16319566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(b->val, a->val, a->sliidx[a->totalslices]));
1632d4002b98SHong Zhang   } else {
16339566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
1634d4002b98SHong Zhang   }
16353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1636d4002b98SHong Zhang }
1637d4002b98SHong Zhang 
MatSetUp_SeqSELL(Mat A)1638d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetUp_SeqSELL(Mat A)
1639d71ae5a4SJacob Faibussowitsch {
1640d4002b98SHong Zhang   PetscFunctionBegin;
16419566063dSJacob Faibussowitsch   PetscCall(MatSeqSELLSetPreallocation(A, PETSC_DEFAULT, NULL));
16423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1643d4002b98SHong Zhang }
1644d4002b98SHong Zhang 
MatSeqSELLGetArray_SeqSELL(Mat A,PetscScalar * array[])1645d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLGetArray_SeqSELL(Mat A, PetscScalar *array[])
1646d71ae5a4SJacob Faibussowitsch {
1647d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
1648d4002b98SHong Zhang 
1649d4002b98SHong Zhang   PetscFunctionBegin;
1650d4002b98SHong Zhang   *array = a->val;
16513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1652d4002b98SHong Zhang }
1653d4002b98SHong Zhang 
MatSeqSELLRestoreArray_SeqSELL(Mat A,PetscScalar * array[])1654d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLRestoreArray_SeqSELL(Mat A, PetscScalar *array[])
1655d71ae5a4SJacob Faibussowitsch {
1656d4002b98SHong Zhang   PetscFunctionBegin;
16573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1658d4002b98SHong Zhang }
1659d4002b98SHong Zhang 
MatScale_SeqSELL(Mat inA,PetscScalar alpha)1660d71ae5a4SJacob Faibussowitsch PetscErrorCode MatScale_SeqSELL(Mat inA, PetscScalar alpha)
1661d71ae5a4SJacob Faibussowitsch {
1662d4002b98SHong Zhang   Mat_SeqSELL *a      = (Mat_SeqSELL *)inA->data;
1663d4002b98SHong Zhang   MatScalar   *aval   = a->val;
1664d4002b98SHong Zhang   PetscScalar  oalpha = alpha;
1665d4002b98SHong Zhang   PetscBLASInt one    = 1, size;
1666d4002b98SHong Zhang 
1667d4002b98SHong Zhang   PetscFunctionBegin;
16689566063dSJacob Faibussowitsch   PetscCall(PetscBLASIntCast(a->sliidx[a->totalslices], &size));
1669792fecdfSBarry Smith   PetscCallBLAS("BLASscal", BLASscal_(&size, &oalpha, aval, &one));
16709566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(a->nz));
1671773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
16722d1451d4SHong Zhang   if (inA->offloadmask != PETSC_OFFLOAD_UNALLOCATED) inA->offloadmask = PETSC_OFFLOAD_CPU;
16732d1451d4SHong Zhang #endif
16743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1675d4002b98SHong Zhang }
1676d4002b98SHong Zhang 
MatShift_SeqSELL(Mat Y,PetscScalar a)1677d71ae5a4SJacob Faibussowitsch PetscErrorCode MatShift_SeqSELL(Mat Y, PetscScalar a)
1678d71ae5a4SJacob Faibussowitsch {
1679d4002b98SHong Zhang   Mat_SeqSELL *y = (Mat_SeqSELL *)Y->data;
1680d4002b98SHong Zhang 
1681d4002b98SHong Zhang   PetscFunctionBegin;
168248a46eb9SPierre Jolivet   if (!Y->preallocated || !y->nz) PetscCall(MatSeqSELLSetPreallocation(Y, 1, NULL));
16839566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
16843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1685d4002b98SHong Zhang }
1686d4002b98SHong Zhang 
MatSOR_SeqSELL(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)1687d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSOR_SeqSELL(Mat A, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
1688d71ae5a4SJacob Faibussowitsch {
1689d4002b98SHong Zhang   Mat_SeqSELL       *a = (Mat_SeqSELL *)A->data;
1690d4002b98SHong Zhang   PetscScalar       *x, sum, *t;
1691f4259b30SLisandro Dalcin   const MatScalar   *idiag = NULL, *mdiag;
1692d4002b98SHong Zhang   const PetscScalar *b, *xb;
1693d4002b98SHong Zhang   PetscInt           n, m = A->rmap->n, i, j, shift;
1694d4002b98SHong Zhang   const PetscInt    *diag;
1695d4002b98SHong Zhang 
1696d4002b98SHong Zhang   PetscFunctionBegin;
1697d4002b98SHong Zhang   its = its * lits;
1698d4002b98SHong Zhang 
169907425a8dSBarry Smith   PetscCall(MatInvertDiagonalForSOR_SeqSELL(A, omega, fshift));
1700d4002b98SHong Zhang   diag  = a->diag;
1701d4002b98SHong Zhang   t     = a->ssor_work;
1702d4002b98SHong Zhang   idiag = a->idiag;
1703d4002b98SHong Zhang   mdiag = a->mdiag;
1704d4002b98SHong Zhang 
17059566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xx, &x));
17069566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(bb, &b));
1707d4002b98SHong Zhang   /* We count flops by assuming the upper triangular and lower triangular parts have the same number of nonzeros */
170808401ef6SPierre Jolivet   PetscCheck(flag != SOR_APPLY_UPPER, PETSC_COMM_SELF, PETSC_ERR_SUP, "SOR_APPLY_UPPER is not implemented");
170908401ef6SPierre Jolivet   PetscCheck(flag != SOR_APPLY_LOWER, PETSC_COMM_SELF, PETSC_ERR_SUP, "SOR_APPLY_LOWER is not implemented");
1710aed4548fSBarry Smith   PetscCheck(!(flag & SOR_EISENSTAT), PETSC_COMM_SELF, PETSC_ERR_SUP, "No support yet for Eisenstat");
1711d4002b98SHong Zhang 
1712d4002b98SHong Zhang   if (flag & SOR_ZERO_INITIAL_GUESS) {
1713d4002b98SHong Zhang     if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) {
1714d4002b98SHong Zhang       for (i = 0; i < m; i++) {
171507e43b41SHong Zhang         shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */
1716d4002b98SHong Zhang         sum   = b[i];
171707e43b41SHong Zhang         n     = (diag[i] - shift) / a->sliceheight;
171807e43b41SHong Zhang         for (j = 0; j < n; j++) sum -= a->val[shift + a->sliceheight * j] * x[a->colidx[shift + a->sliceheight * j]];
1719d4002b98SHong Zhang         t[i] = sum;
1720d4002b98SHong Zhang         x[i] = sum * idiag[i];
1721d4002b98SHong Zhang       }
1722d4002b98SHong Zhang       xb = t;
17239566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(a->nz));
1724d4002b98SHong Zhang     } else xb = b;
1725d4002b98SHong Zhang     if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) {
1726d4002b98SHong Zhang       for (i = m - 1; i >= 0; i--) {
172707e43b41SHong Zhang         shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */
1728d4002b98SHong Zhang         sum   = xb[i];
172907e43b41SHong Zhang         n     = a->rlen[i] - (diag[i] - shift) / a->sliceheight - 1;
173007e43b41SHong Zhang         for (j = 1; j <= n; j++) sum -= a->val[diag[i] + a->sliceheight * j] * x[a->colidx[diag[i] + a->sliceheight * j]];
1731d4002b98SHong Zhang         if (xb == b) {
1732d4002b98SHong Zhang           x[i] = sum * idiag[i];
1733d4002b98SHong Zhang         } else {
1734d4002b98SHong Zhang           x[i] = (1. - omega) * x[i] + sum * idiag[i]; /* omega in idiag */
1735d4002b98SHong Zhang         }
1736d4002b98SHong Zhang       }
17379566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(a->nz)); /* assumes 1/2 in upper */
1738d4002b98SHong Zhang     }
1739d4002b98SHong Zhang     its--;
1740d4002b98SHong Zhang   }
1741d4002b98SHong Zhang   while (its--) {
1742d4002b98SHong Zhang     if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) {
1743d4002b98SHong Zhang       for (i = 0; i < m; i++) {
1744d4002b98SHong Zhang         /* lower */
174507e43b41SHong Zhang         shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */
1746d4002b98SHong Zhang         sum   = b[i];
174707e43b41SHong Zhang         n     = (diag[i] - shift) / a->sliceheight;
174807e43b41SHong Zhang         for (j = 0; j < n; j++) sum -= a->val[shift + a->sliceheight * j] * x[a->colidx[shift + a->sliceheight * j]];
1749d4002b98SHong Zhang         t[i] = sum; /* save application of the lower-triangular part */
1750d4002b98SHong Zhang         /* upper */
175107e43b41SHong Zhang         n = a->rlen[i] - (diag[i] - shift) / a->sliceheight - 1;
175207e43b41SHong Zhang         for (j = 1; j <= n; j++) sum -= a->val[diag[i] + a->sliceheight * j] * x[a->colidx[diag[i] + a->sliceheight * j]];
1753d4002b98SHong Zhang         x[i] = (1. - omega) * x[i] + sum * idiag[i]; /* omega in idiag */
1754d4002b98SHong Zhang       }
1755d4002b98SHong Zhang       xb = t;
17569566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * a->nz));
1757d4002b98SHong Zhang     } else xb = b;
1758d4002b98SHong Zhang     if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) {
1759d4002b98SHong Zhang       for (i = m - 1; i >= 0; i--) {
176007e43b41SHong Zhang         shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */
1761d4002b98SHong Zhang         sum   = xb[i];
1762d4002b98SHong Zhang         if (xb == b) {
1763d4002b98SHong Zhang           /* whole matrix (no checkpointing available) */
1764d4002b98SHong Zhang           n = a->rlen[i];
176507e43b41SHong Zhang           for (j = 0; j < n; j++) sum -= a->val[shift + a->sliceheight * j] * x[a->colidx[shift + a->sliceheight * j]];
1766d4002b98SHong Zhang           x[i] = (1. - omega) * x[i] + (sum + mdiag[i] * x[i]) * idiag[i];
1767d4002b98SHong Zhang         } else { /* lower-triangular part has been saved, so only apply upper-triangular */
176807e43b41SHong Zhang           n = a->rlen[i] - (diag[i] - shift) / a->sliceheight - 1;
176907e43b41SHong Zhang           for (j = 1; j <= n; j++) sum -= a->val[diag[i] + a->sliceheight * j] * x[a->colidx[diag[i] + a->sliceheight * j]];
1770d4002b98SHong Zhang           x[i] = (1. - omega) * x[i] + sum * idiag[i]; /* omega in idiag */
1771d4002b98SHong Zhang         }
1772d4002b98SHong Zhang       }
1773d4002b98SHong Zhang       if (xb == b) {
17749566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(2.0 * a->nz));
1775d4002b98SHong Zhang       } else {
17769566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(a->nz)); /* assumes 1/2 in upper */
1777d4002b98SHong Zhang       }
1778d4002b98SHong Zhang     }
1779d4002b98SHong Zhang   }
17809566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xx, &x));
17819566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(bb, &b));
17823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1783d4002b98SHong Zhang }
1784d4002b98SHong Zhang 
1785d4002b98SHong Zhang static struct _MatOps MatOps_Values = {MatSetValues_SeqSELL,
17866108893eSStefano Zampini                                        MatGetRow_SeqSELL,
17876108893eSStefano Zampini                                        MatRestoreRow_SeqSELL,
1788d4002b98SHong Zhang                                        MatMult_SeqSELL,
1789d4002b98SHong Zhang                                        /* 4*/ MatMultAdd_SeqSELL,
1790d4002b98SHong Zhang                                        MatMultTranspose_SeqSELL,
1791d4002b98SHong Zhang                                        MatMultTransposeAdd_SeqSELL,
1792f4259b30SLisandro Dalcin                                        NULL,
1793f4259b30SLisandro Dalcin                                        NULL,
1794f4259b30SLisandro Dalcin                                        NULL,
1795f4259b30SLisandro Dalcin                                        /* 10*/ NULL,
1796f4259b30SLisandro Dalcin                                        NULL,
1797f4259b30SLisandro Dalcin                                        NULL,
1798d4002b98SHong Zhang                                        MatSOR_SeqSELL,
1799f4259b30SLisandro Dalcin                                        NULL,
1800d4002b98SHong Zhang                                        /* 15*/ MatGetInfo_SeqSELL,
1801d4002b98SHong Zhang                                        MatEqual_SeqSELL,
1802d4002b98SHong Zhang                                        MatGetDiagonal_SeqSELL,
1803d4002b98SHong Zhang                                        MatDiagonalScale_SeqSELL,
1804f4259b30SLisandro Dalcin                                        NULL,
1805f4259b30SLisandro Dalcin                                        /* 20*/ NULL,
1806d4002b98SHong Zhang                                        MatAssemblyEnd_SeqSELL,
1807d4002b98SHong Zhang                                        MatSetOption_SeqSELL,
1808d4002b98SHong Zhang                                        MatZeroEntries_SeqSELL,
1809f4259b30SLisandro Dalcin                                        /* 24*/ NULL,
1810f4259b30SLisandro Dalcin                                        NULL,
1811f4259b30SLisandro Dalcin                                        NULL,
1812f4259b30SLisandro Dalcin                                        NULL,
1813f4259b30SLisandro Dalcin                                        NULL,
1814d4002b98SHong Zhang                                        /* 29*/ MatSetUp_SeqSELL,
1815f4259b30SLisandro Dalcin                                        NULL,
1816f4259b30SLisandro Dalcin                                        NULL,
1817f4259b30SLisandro Dalcin                                        NULL,
1818f4259b30SLisandro Dalcin                                        NULL,
1819d4002b98SHong Zhang                                        /* 34*/ MatDuplicate_SeqSELL,
1820f4259b30SLisandro Dalcin                                        NULL,
1821f4259b30SLisandro Dalcin                                        NULL,
1822f4259b30SLisandro Dalcin                                        NULL,
1823f4259b30SLisandro Dalcin                                        NULL,
1824f4259b30SLisandro Dalcin                                        /* 39*/ NULL,
1825f4259b30SLisandro Dalcin                                        NULL,
1826f4259b30SLisandro Dalcin                                        NULL,
1827d4002b98SHong Zhang                                        MatGetValues_SeqSELL,
1828d4002b98SHong Zhang                                        MatCopy_SeqSELL,
1829f4259b30SLisandro Dalcin                                        /* 44*/ NULL,
1830d4002b98SHong Zhang                                        MatScale_SeqSELL,
1831d4002b98SHong Zhang                                        MatShift_SeqSELL,
1832f4259b30SLisandro Dalcin                                        NULL,
1833f4259b30SLisandro Dalcin                                        NULL,
1834f4259b30SLisandro Dalcin                                        /* 49*/ NULL,
1835f4259b30SLisandro Dalcin                                        NULL,
1836f4259b30SLisandro Dalcin                                        NULL,
1837f4259b30SLisandro Dalcin                                        NULL,
1838f4259b30SLisandro Dalcin                                        NULL,
1839d4002b98SHong Zhang                                        /* 54*/ MatFDColoringCreate_SeqXAIJ,
1840f4259b30SLisandro Dalcin                                        NULL,
1841f4259b30SLisandro Dalcin                                        NULL,
1842f4259b30SLisandro Dalcin                                        NULL,
1843f4259b30SLisandro Dalcin                                        NULL,
1844f4259b30SLisandro Dalcin                                        /* 59*/ NULL,
1845d4002b98SHong Zhang                                        MatDestroy_SeqSELL,
1846d4002b98SHong Zhang                                        MatView_SeqSELL,
1847f4259b30SLisandro Dalcin                                        NULL,
1848f4259b30SLisandro Dalcin                                        NULL,
1849f4259b30SLisandro Dalcin                                        /* 64*/ NULL,
1850f4259b30SLisandro Dalcin                                        NULL,
1851f4259b30SLisandro Dalcin                                        NULL,
1852f4259b30SLisandro Dalcin                                        NULL,
1853f4259b30SLisandro Dalcin                                        NULL,
1854f4259b30SLisandro Dalcin                                        /* 69*/ NULL,
1855f4259b30SLisandro Dalcin                                        NULL,
1856f4259b30SLisandro Dalcin                                        NULL,
18578bb0f5c6SPierre Jolivet                                        MatFDColoringApply_AIJ, /* reuse the FDColoring function for AIJ */
1858f4259b30SLisandro Dalcin                                        NULL,
1859f4259b30SLisandro Dalcin                                        /* 74*/ NULL,
18608bb0f5c6SPierre Jolivet                                        NULL,
1861f4259b30SLisandro Dalcin                                        NULL,
1862f4259b30SLisandro Dalcin                                        NULL,
1863f4259b30SLisandro Dalcin                                        NULL,
1864f4259b30SLisandro Dalcin                                        /* 79*/ NULL,
1865f4259b30SLisandro Dalcin                                        NULL,
1866f4259b30SLisandro Dalcin                                        NULL,
1867f4259b30SLisandro Dalcin                                        NULL,
1868f4259b30SLisandro Dalcin                                        NULL,
1869f4259b30SLisandro Dalcin                                        /* 84*/ NULL,
1870f4259b30SLisandro Dalcin                                        NULL,
1871f4259b30SLisandro Dalcin                                        NULL,
1872f4259b30SLisandro Dalcin                                        NULL,
1873f4259b30SLisandro Dalcin                                        NULL,
1874f4259b30SLisandro Dalcin                                        /* 89*/ NULL,
1875f4259b30SLisandro Dalcin                                        NULL,
1876f4259b30SLisandro Dalcin                                        NULL,
1877f4259b30SLisandro Dalcin                                        NULL,
18788bb0f5c6SPierre Jolivet                                        MatConjugate_SeqSELL,
1879f4259b30SLisandro Dalcin                                        /* 94*/ NULL,
1880f4259b30SLisandro Dalcin                                        NULL,
1881f4259b30SLisandro Dalcin                                        NULL,
1882f4259b30SLisandro Dalcin                                        NULL,
1883f4259b30SLisandro Dalcin                                        NULL,
1884f4259b30SLisandro Dalcin                                        /* 99*/ NULL,
1885f4259b30SLisandro Dalcin                                        NULL,
1886f4259b30SLisandro Dalcin                                        NULL,
1887f4259b30SLisandro Dalcin                                        NULL,
18888bb0f5c6SPierre Jolivet                                        NULL,
1889421480d9SBarry Smith                                        /*104*/ NULL,
1890f4259b30SLisandro Dalcin                                        NULL,
1891f4259b30SLisandro Dalcin                                        NULL,
1892f4259b30SLisandro Dalcin                                        NULL,
1893f4259b30SLisandro Dalcin                                        NULL,
1894f4259b30SLisandro Dalcin                                        /*109*/ NULL,
1895f4259b30SLisandro Dalcin                                        NULL,
1896f4259b30SLisandro Dalcin                                        NULL,
1897f4259b30SLisandro Dalcin                                        NULL,
18988bb0f5c6SPierre Jolivet                                        NULL,
1899f4259b30SLisandro Dalcin                                        /*114*/ NULL,
1900f4259b30SLisandro Dalcin                                        NULL,
1901f4259b30SLisandro Dalcin                                        NULL,
1902f4259b30SLisandro Dalcin                                        NULL,
1903f4259b30SLisandro Dalcin                                        NULL,
1904f4259b30SLisandro Dalcin                                        /*119*/ NULL,
1905f4259b30SLisandro Dalcin                                        NULL,
1906f4259b30SLisandro Dalcin                                        NULL,
1907f4259b30SLisandro Dalcin                                        NULL,
1908f4259b30SLisandro Dalcin                                        NULL,
1909f4259b30SLisandro Dalcin                                        /*124*/ NULL,
1910f4259b30SLisandro Dalcin                                        NULL,
1911f4259b30SLisandro Dalcin                                        NULL,
1912f4259b30SLisandro Dalcin                                        NULL,
1913421480d9SBarry Smith                                        MatFDColoringSetUp_SeqXAIJ,
1914421480d9SBarry Smith                                        /*129*/ NULL,
1915f4259b30SLisandro Dalcin                                        NULL,
1916f4259b30SLisandro Dalcin                                        NULL,
1917f4259b30SLisandro Dalcin                                        NULL,
1918f4259b30SLisandro Dalcin                                        NULL,
1919f4259b30SLisandro Dalcin                                        /*134*/ NULL,
1920f4259b30SLisandro Dalcin                                        NULL,
1921f4259b30SLisandro Dalcin                                        NULL,
1922f4259b30SLisandro Dalcin                                        NULL,
1923f4259b30SLisandro Dalcin                                        NULL,
1924f4259b30SLisandro Dalcin                                        /*139*/ NULL,
1925f4259b30SLisandro Dalcin                                        NULL,
1926f4259b30SLisandro Dalcin                                        NULL,
192703db1824SAlex Lindsay                                        NULL,
1928dec0b466SHong Zhang                                        NULL};
1929d4002b98SHong Zhang 
MatStoreValues_SeqSELL(Mat mat)1930ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_SeqSELL(Mat mat)
1931d71ae5a4SJacob Faibussowitsch {
1932d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data;
1933d4002b98SHong Zhang 
1934d4002b98SHong Zhang   PetscFunctionBegin;
193528b400f6SJacob Faibussowitsch   PetscCheck(a->nonew, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
1936d4002b98SHong Zhang 
1937d4002b98SHong Zhang   /* allocate space for values if not already there */
1938aa624791SPierre Jolivet   if (!a->saved_values) PetscCall(PetscMalloc1(a->sliidx[a->totalslices] + 1, &a->saved_values));
1939d4002b98SHong Zhang 
1940d4002b98SHong Zhang   /* copy values over */
19419566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a->saved_values, a->val, a->sliidx[a->totalslices]));
19423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1943d4002b98SHong Zhang }
1944d4002b98SHong Zhang 
MatRetrieveValues_SeqSELL(Mat mat)1945ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_SeqSELL(Mat mat)
1946d71ae5a4SJacob Faibussowitsch {
1947d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data;
1948d4002b98SHong Zhang 
1949d4002b98SHong Zhang   PetscFunctionBegin;
195028b400f6SJacob Faibussowitsch   PetscCheck(a->nonew, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
195128b400f6SJacob Faibussowitsch   PetscCheck(a->saved_values, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call MatStoreValues(A);first");
19529566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a->val, a->saved_values, a->sliidx[a->totalslices]));
19533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1954d4002b98SHong Zhang }
1955d4002b98SHong Zhang 
MatSeqSELLGetFillRatio_SeqSELL(Mat mat,PetscReal * ratio)1956ba38deedSJacob Faibussowitsch static PetscErrorCode MatSeqSELLGetFillRatio_SeqSELL(Mat mat, PetscReal *ratio)
195707e43b41SHong Zhang {
195807e43b41SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data;
195907e43b41SHong Zhang 
196007e43b41SHong Zhang   PetscFunctionBegin;
196107e43b41SHong Zhang   if (a->totalslices && a->sliidx[a->totalslices]) {
196207e43b41SHong Zhang     *ratio = (PetscReal)(a->sliidx[a->totalslices] - a->nz) / a->sliidx[a->totalslices];
196307e43b41SHong Zhang   } else {
196407e43b41SHong Zhang     *ratio = 0.0;
196507e43b41SHong Zhang   }
196607e43b41SHong Zhang   PetscFunctionReturn(PETSC_SUCCESS);
196707e43b41SHong Zhang }
196807e43b41SHong Zhang 
MatSeqSELLGetMaxSliceWidth_SeqSELL(Mat mat,PetscInt * slicewidth)1969ba38deedSJacob Faibussowitsch static PetscErrorCode MatSeqSELLGetMaxSliceWidth_SeqSELL(Mat mat, PetscInt *slicewidth)
197007e43b41SHong Zhang {
197107e43b41SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data;
197207e43b41SHong Zhang   PetscInt     i, current_slicewidth;
197307e43b41SHong Zhang 
197407e43b41SHong Zhang   PetscFunctionBegin;
197507e43b41SHong Zhang   *slicewidth = 0;
197607e43b41SHong Zhang   for (i = 0; i < a->totalslices; i++) {
197707e43b41SHong Zhang     current_slicewidth = (a->sliidx[i + 1] - a->sliidx[i]) / a->sliceheight;
197807e43b41SHong Zhang     if (current_slicewidth > *slicewidth) *slicewidth = current_slicewidth;
197907e43b41SHong Zhang   }
198007e43b41SHong Zhang   PetscFunctionReturn(PETSC_SUCCESS);
198107e43b41SHong Zhang }
198207e43b41SHong Zhang 
MatSeqSELLGetAvgSliceWidth_SeqSELL(Mat mat,PetscReal * slicewidth)1983ba38deedSJacob Faibussowitsch static PetscErrorCode MatSeqSELLGetAvgSliceWidth_SeqSELL(Mat mat, PetscReal *slicewidth)
198407e43b41SHong Zhang {
198507e43b41SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data;
198607e43b41SHong Zhang 
198707e43b41SHong Zhang   PetscFunctionBegin;
198807e43b41SHong Zhang   *slicewidth = 0;
1989ac530a7eSPierre Jolivet   if (a->totalslices) *slicewidth = (PetscReal)a->sliidx[a->totalslices] / a->sliceheight / a->totalslices;
199007e43b41SHong Zhang   PetscFunctionReturn(PETSC_SUCCESS);
199107e43b41SHong Zhang }
199207e43b41SHong Zhang 
MatSeqSELLGetVarSliceSize_SeqSELL(Mat mat,PetscReal * variance)1993ba38deedSJacob Faibussowitsch static PetscErrorCode MatSeqSELLGetVarSliceSize_SeqSELL(Mat mat, PetscReal *variance)
1994b921024eSHong Zhang {
1995b921024eSHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data;
1996b921024eSHong Zhang   PetscReal    mean;
1997b921024eSHong Zhang   PetscInt     i, totalslices = a->totalslices, *sliidx = a->sliidx;
1998b921024eSHong Zhang 
1999b921024eSHong Zhang   PetscFunctionBegin;
2000b921024eSHong Zhang   *variance = 0;
2001b921024eSHong Zhang   if (totalslices) {
2002b921024eSHong Zhang     mean = (PetscReal)sliidx[totalslices] / totalslices;
2003ac530a7eSPierre Jolivet     for (i = 1; i <= totalslices; i++) *variance += ((PetscReal)(sliidx[i] - sliidx[i - 1]) - mean) * ((PetscReal)(sliidx[i] - sliidx[i - 1]) - mean) / totalslices;
2004b921024eSHong Zhang   }
2005b921024eSHong Zhang   PetscFunctionReturn(PETSC_SUCCESS);
2006b921024eSHong Zhang }
2007b921024eSHong Zhang 
MatSeqSELLSetSliceHeight_SeqSELL(Mat A,PetscInt sliceheight)2008ba38deedSJacob Faibussowitsch static PetscErrorCode MatSeqSELLSetSliceHeight_SeqSELL(Mat A, PetscInt sliceheight)
200907e43b41SHong Zhang {
201007e43b41SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
201107e43b41SHong Zhang 
201207e43b41SHong Zhang   PetscFunctionBegin;
201307e43b41SHong Zhang   if (A->preallocated) PetscFunctionReturn(PETSC_SUCCESS);
201407e43b41SHong Zhang   PetscCheck(a->sliceheight <= 0 || a->sliceheight == sliceheight, PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot change slice height %" PetscInt_FMT " to %" PetscInt_FMT, a->sliceheight, sliceheight);
201507e43b41SHong Zhang   a->sliceheight = sliceheight;
2016773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
2017773bf0f6SHong Zhang   PetscCheck(PetscMax(DEVICE_MEM_ALIGN, sliceheight) % PetscMin(DEVICE_MEM_ALIGN, sliceheight) == 0, PETSC_COMM_SELF, PETSC_ERR_SUP, "The slice height is not compatible with DEVICE_MEM_ALIGN (one must be divisible by the other) %" PetscInt_FMT, sliceheight);
20184e58db63SHong Zhang #endif
201907e43b41SHong Zhang   PetscFunctionReturn(PETSC_SUCCESS);
202007e43b41SHong Zhang }
202107e43b41SHong Zhang 
2022cc4c1da9SBarry Smith /*@
202307e43b41SHong Zhang   MatSeqSELLGetFillRatio - returns a ratio that indicates the irregularity of the matrix.
202407e43b41SHong Zhang 
202507e43b41SHong Zhang   Not Collective
202607e43b41SHong Zhang 
202707e43b41SHong Zhang   Input Parameter:
202807e43b41SHong Zhang . A - a MATSEQSELL matrix
202907e43b41SHong Zhang 
203007e43b41SHong Zhang   Output Parameter:
203107e43b41SHong Zhang . ratio - ratio of number of padded zeros to number of allocated elements
203207e43b41SHong Zhang 
203307e43b41SHong Zhang   Level: intermediate
20342920cce0SJacob Faibussowitsch 
20352920cce0SJacob Faibussowitsch .seealso: `MATSEQSELL`, `MatSeqSELLGetAvgSliceWidth()`
203607e43b41SHong Zhang @*/
MatSeqSELLGetFillRatio(Mat A,PetscReal * ratio)203707e43b41SHong Zhang PetscErrorCode MatSeqSELLGetFillRatio(Mat A, PetscReal *ratio)
203807e43b41SHong Zhang {
203907e43b41SHong Zhang   PetscFunctionBegin;
204007e43b41SHong Zhang   PetscUseMethod(A, "MatSeqSELLGetFillRatio_C", (Mat, PetscReal *), (A, ratio));
204107e43b41SHong Zhang   PetscFunctionReturn(PETSC_SUCCESS);
204207e43b41SHong Zhang }
204307e43b41SHong Zhang 
2044cc4c1da9SBarry Smith /*@
204507e43b41SHong Zhang   MatSeqSELLGetMaxSliceWidth - returns the maximum slice width.
204607e43b41SHong Zhang 
204707e43b41SHong Zhang   Not Collective
204807e43b41SHong Zhang 
204907e43b41SHong Zhang   Input Parameter:
205007e43b41SHong Zhang . A - a MATSEQSELL matrix
205107e43b41SHong Zhang 
205207e43b41SHong Zhang   Output Parameter:
205307e43b41SHong Zhang . slicewidth - maximum slice width
205407e43b41SHong Zhang 
205507e43b41SHong Zhang   Level: intermediate
20562920cce0SJacob Faibussowitsch 
20572920cce0SJacob Faibussowitsch .seealso: `MATSEQSELL`, `MatSeqSELLGetAvgSliceWidth()`
205807e43b41SHong Zhang @*/
MatSeqSELLGetMaxSliceWidth(Mat A,PetscInt * slicewidth)205907e43b41SHong Zhang PetscErrorCode MatSeqSELLGetMaxSliceWidth(Mat A, PetscInt *slicewidth)
206007e43b41SHong Zhang {
206107e43b41SHong Zhang   PetscFunctionBegin;
206207e43b41SHong Zhang   PetscUseMethod(A, "MatSeqSELLGetMaxSliceWidth_C", (Mat, PetscInt *), (A, slicewidth));
206307e43b41SHong Zhang   PetscFunctionReturn(PETSC_SUCCESS);
206407e43b41SHong Zhang }
206507e43b41SHong Zhang 
2066cc4c1da9SBarry Smith /*@
206707e43b41SHong Zhang   MatSeqSELLGetAvgSliceWidth - returns the average slice width.
206807e43b41SHong Zhang 
206907e43b41SHong Zhang   Not Collective
207007e43b41SHong Zhang 
207107e43b41SHong Zhang   Input Parameter:
207207e43b41SHong Zhang . A - a MATSEQSELL matrix
207307e43b41SHong Zhang 
207407e43b41SHong Zhang   Output Parameter:
207507e43b41SHong Zhang . slicewidth - average slice width
207607e43b41SHong Zhang 
207707e43b41SHong Zhang   Level: intermediate
20782920cce0SJacob Faibussowitsch 
20792920cce0SJacob Faibussowitsch .seealso: `MATSEQSELL`, `MatSeqSELLGetMaxSliceWidth()`
208007e43b41SHong Zhang @*/
MatSeqSELLGetAvgSliceWidth(Mat A,PetscReal * slicewidth)208107e43b41SHong Zhang PetscErrorCode MatSeqSELLGetAvgSliceWidth(Mat A, PetscReal *slicewidth)
208207e43b41SHong Zhang {
208307e43b41SHong Zhang   PetscFunctionBegin;
208407e43b41SHong Zhang   PetscUseMethod(A, "MatSeqSELLGetAvgSliceWidth_C", (Mat, PetscReal *), (A, slicewidth));
208507e43b41SHong Zhang   PetscFunctionReturn(PETSC_SUCCESS);
208607e43b41SHong Zhang }
208707e43b41SHong Zhang 
2088cc4c1da9SBarry Smith /*@
208907e43b41SHong Zhang   MatSeqSELLSetSliceHeight - sets the slice height.
209007e43b41SHong Zhang 
209107e43b41SHong Zhang   Not Collective
209207e43b41SHong Zhang 
209307e43b41SHong Zhang   Input Parameters:
209407e43b41SHong Zhang + A           - a MATSEQSELL matrix
209507e43b41SHong Zhang - sliceheight - slice height
209607e43b41SHong Zhang 
209707e43b41SHong Zhang   Notes:
209807e43b41SHong Zhang   You cannot change the slice height once it have been set.
209907e43b41SHong Zhang 
210007e43b41SHong Zhang   The slice height must be set before MatSetUp() or MatXXXSetPreallocation() is called.
210107e43b41SHong Zhang 
210207e43b41SHong Zhang   Level: intermediate
21032920cce0SJacob Faibussowitsch 
21042920cce0SJacob Faibussowitsch .seealso: `MATSEQSELL`, `MatSeqSELLGetVarSliceSize()`
210507e43b41SHong Zhang @*/
MatSeqSELLSetSliceHeight(Mat A,PetscInt sliceheight)210607e43b41SHong Zhang PetscErrorCode MatSeqSELLSetSliceHeight(Mat A, PetscInt sliceheight)
210707e43b41SHong Zhang {
210807e43b41SHong Zhang   PetscFunctionBegin;
210907e43b41SHong Zhang   PetscUseMethod(A, "MatSeqSELLSetSliceHeight_C", (Mat, PetscInt), (A, sliceheight));
211007e43b41SHong Zhang   PetscFunctionReturn(PETSC_SUCCESS);
211107e43b41SHong Zhang }
211207e43b41SHong Zhang 
2113cc4c1da9SBarry Smith /*@
211407e43b41SHong Zhang   MatSeqSELLGetVarSliceSize - returns the variance of the slice size.
211507e43b41SHong Zhang 
211607e43b41SHong Zhang   Not Collective
211707e43b41SHong Zhang 
211807e43b41SHong Zhang   Input Parameter:
211907e43b41SHong Zhang . A - a MATSEQSELL matrix
212007e43b41SHong Zhang 
212107e43b41SHong Zhang   Output Parameter:
212207e43b41SHong Zhang . variance - variance of the slice size
212307e43b41SHong Zhang 
212407e43b41SHong Zhang   Level: intermediate
21252920cce0SJacob Faibussowitsch 
21262920cce0SJacob Faibussowitsch .seealso: `MATSEQSELL`, `MatSeqSELLSetSliceHeight()`
212707e43b41SHong Zhang @*/
MatSeqSELLGetVarSliceSize(Mat A,PetscReal * variance)212807e43b41SHong Zhang PetscErrorCode MatSeqSELLGetVarSliceSize(Mat A, PetscReal *variance)
212907e43b41SHong Zhang {
213007e43b41SHong Zhang   PetscFunctionBegin;
213107e43b41SHong Zhang   PetscUseMethod(A, "MatSeqSELLGetVarSliceSize_C", (Mat, PetscReal *), (A, variance));
213207e43b41SHong Zhang   PetscFunctionReturn(PETSC_SUCCESS);
213307e43b41SHong Zhang }
213407e43b41SHong Zhang 
21352d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA)
21362d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatConvert_SeqSELL_SeqSELLCUDA(Mat);
21372d1451d4SHong Zhang #endif
2138773bf0f6SHong Zhang #if defined(PETSC_HAVE_HIP)
2139773bf0f6SHong Zhang PETSC_EXTERN PetscErrorCode MatConvert_SeqSELL_SeqSELLHIP(Mat);
2140773bf0f6SHong Zhang #endif
21412d1451d4SHong Zhang 
MatCreate_SeqSELL(Mat B)2142d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_SeqSELL(Mat B)
2143d71ae5a4SJacob Faibussowitsch {
2144d4002b98SHong Zhang   Mat_SeqSELL *b;
2145d4002b98SHong Zhang   PetscMPIInt  size;
2146d4002b98SHong Zhang 
2147d4002b98SHong Zhang   PetscFunctionBegin;
21489566063dSJacob Faibussowitsch   PetscCall(PetscCitationsRegister(citation, &cited));
21499566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
215008401ef6SPierre Jolivet   PetscCheck(size <= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Comm must be of size 1");
2151d4002b98SHong Zhang 
21524dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
2153d4002b98SHong Zhang 
2154d4002b98SHong Zhang   B->data   = (void *)b;
2155aea10558SJacob Faibussowitsch   B->ops[0] = MatOps_Values;
2156d4002b98SHong Zhang 
2157f4259b30SLisandro Dalcin   b->row                = NULL;
2158f4259b30SLisandro Dalcin   b->col                = NULL;
2159f4259b30SLisandro Dalcin   b->icol               = NULL;
2160d4002b98SHong Zhang   b->reallocs           = 0;
2161d4002b98SHong Zhang   b->ignorezeroentries  = PETSC_FALSE;
2162d4002b98SHong Zhang   b->roworiented        = PETSC_TRUE;
2163d4002b98SHong Zhang   b->nonew              = 0;
2164f4259b30SLisandro Dalcin   b->diag               = NULL;
2165f4259b30SLisandro Dalcin   b->solve_work         = NULL;
2166f4259b30SLisandro Dalcin   B->spptr              = NULL;
2167f4259b30SLisandro Dalcin   b->saved_values       = NULL;
2168f4259b30SLisandro Dalcin   b->idiag              = NULL;
2169f4259b30SLisandro Dalcin   b->mdiag              = NULL;
2170f4259b30SLisandro Dalcin   b->ssor_work          = NULL;
2171d4002b98SHong Zhang   b->omega              = 1.0;
2172d4002b98SHong Zhang   b->fshift             = 0.0;
2173d4002b98SHong Zhang   b->keepnonzeropattern = PETSC_FALSE;
217407e43b41SHong Zhang   b->sliceheight        = 0;
2175d4002b98SHong Zhang 
21769566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATSEQSELL));
21779566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLGetArray_C", MatSeqSELLGetArray_SeqSELL));
21789566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLRestoreArray_C", MatSeqSELLRestoreArray_SeqSELL));
21799566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_SeqSELL));
21809566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_SeqSELL));
21819566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLSetPreallocation_C", MatSeqSELLSetPreallocation_SeqSELL));
2182b5917f1bSHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqsell_seqaij_C", MatConvert_SeqSELL_SeqAIJ));
21832d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA)
2184b5917f1bSHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqsell_seqsellcuda_C", MatConvert_SeqSELL_SeqSELLCUDA));
21852d1451d4SHong Zhang #endif
2186773bf0f6SHong Zhang #if defined(PETSC_HAVE_HIP)
2187773bf0f6SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqsell_seqsellhip_C", MatConvert_SeqSELL_SeqSELLHIP));
2188773bf0f6SHong Zhang #endif
218907e43b41SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLGetFillRatio_C", MatSeqSELLGetFillRatio_SeqSELL));
219007e43b41SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLGetMaxSliceWidth_C", MatSeqSELLGetMaxSliceWidth_SeqSELL));
219107e43b41SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLGetAvgSliceWidth_C", MatSeqSELLGetAvgSliceWidth_SeqSELL));
2192b921024eSHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLGetVarSliceSize_C", MatSeqSELLGetVarSliceSize_SeqSELL));
219307e43b41SHong Zhang   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLSetSliceHeight_C", MatSeqSELLSetSliceHeight_SeqSELL));
219407e43b41SHong Zhang 
219507e43b41SHong Zhang   PetscObjectOptionsBegin((PetscObject)B);
219607e43b41SHong Zhang   {
219707e43b41SHong Zhang     PetscInt  newsh = -1;
219807e43b41SHong Zhang     PetscBool flg;
2199773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
220090d2215bSHong Zhang     PetscInt chunksize = 0;
220190d2215bSHong Zhang #endif
220207e43b41SHong Zhang 
220307e43b41SHong Zhang     PetscCall(PetscOptionsInt("-mat_sell_slice_height", "Set the slice height used to store SELL matrix", "MatSELLSetSliceHeight", newsh, &newsh, &flg));
22043a7d0413SPierre Jolivet     if (flg) PetscCall(MatSeqSELLSetSliceHeight(B, newsh));
2205773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
2206773bf0f6SHong Zhang     PetscCall(PetscOptionsInt("-mat_sell_chunk_size", "Set the chunksize for load-balanced CUDA/HIP kernels. Choices include 64,128,256,512,1024", NULL, chunksize, &chunksize, &flg));
220790d2215bSHong Zhang     if (flg) {
220890d2215bSHong Zhang       PetscCheck(chunksize >= 64 && chunksize <= 1024 && chunksize % 64 == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "chunksize must be a number in {64,128,256,512,1024}: value %" PetscInt_FMT, chunksize);
220990d2215bSHong Zhang       b->chunksize = chunksize;
221090d2215bSHong Zhang     }
221190d2215bSHong Zhang #endif
221207e43b41SHong Zhang   }
221307e43b41SHong Zhang   PetscOptionsEnd();
22143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2215d4002b98SHong Zhang }
2216d4002b98SHong Zhang 
2217d4002b98SHong Zhang /*
2218d4002b98SHong Zhang  Given a matrix generated with MatGetFactor() duplicates all the information in A into B
2219d4002b98SHong Zhang  */
MatDuplicateNoCreate_SeqSELL(Mat C,Mat A,MatDuplicateOption cpvalues,PetscBool mallocmatspace)2220ba38deedSJacob Faibussowitsch static PetscErrorCode MatDuplicateNoCreate_SeqSELL(Mat C, Mat A, MatDuplicateOption cpvalues, PetscBool mallocmatspace)
2221d71ae5a4SJacob Faibussowitsch {
2222ed73aabaSBarry Smith   Mat_SeqSELL *c = (Mat_SeqSELL *)C->data, *a = (Mat_SeqSELL *)A->data;
2223d4002b98SHong Zhang   PetscInt     i, m                           = A->rmap->n;
2224d4002b98SHong Zhang   PetscInt     totalslices = a->totalslices;
2225d4002b98SHong Zhang 
2226d4002b98SHong Zhang   PetscFunctionBegin;
2227d4002b98SHong Zhang   C->factortype = A->factortype;
2228f4259b30SLisandro Dalcin   c->row        = NULL;
2229f4259b30SLisandro Dalcin   c->col        = NULL;
2230f4259b30SLisandro Dalcin   c->icol       = NULL;
2231d4002b98SHong Zhang   c->reallocs   = 0;
2232d4002b98SHong Zhang   C->assembled  = PETSC_TRUE;
2233d4002b98SHong Zhang 
22349566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(A->rmap, &C->rmap));
22359566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(A->cmap, &C->cmap));
2236d4002b98SHong Zhang 
2237773bf0f6SHong Zhang   c->sliceheight = a->sliceheight;
2238773bf0f6SHong Zhang   PetscCall(PetscMalloc1(c->sliceheight * totalslices, &c->rlen));
22399566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(totalslices + 1, &c->sliidx));
2240d4002b98SHong Zhang 
2241d4002b98SHong Zhang   for (i = 0; i < m; i++) c->rlen[i] = a->rlen[i];
2242d4002b98SHong Zhang   for (i = 0; i < totalslices + 1; i++) c->sliidx[i] = a->sliidx[i];
2243d4002b98SHong Zhang 
2244d4002b98SHong Zhang   /* allocate the matrix space */
2245d4002b98SHong Zhang   if (mallocmatspace) {
22469566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(a->maxallocmat, &c->val, a->maxallocmat, &c->colidx));
2247d4002b98SHong Zhang 
2248d4002b98SHong Zhang     c->singlemalloc = PETSC_TRUE;
2249d4002b98SHong Zhang 
2250d4002b98SHong Zhang     if (m > 0) {
22519566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(c->colidx, a->colidx, a->maxallocmat));
2252d4002b98SHong Zhang       if (cpvalues == MAT_COPY_VALUES) {
22539566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(c->val, a->val, a->maxallocmat));
2254d4002b98SHong Zhang       } else {
22559566063dSJacob Faibussowitsch         PetscCall(PetscArrayzero(c->val, a->maxallocmat));
2256d4002b98SHong Zhang       }
2257d4002b98SHong Zhang     }
2258d4002b98SHong Zhang   }
2259d4002b98SHong Zhang 
2260d4002b98SHong Zhang   c->ignorezeroentries  = a->ignorezeroentries;
2261d4002b98SHong Zhang   c->roworiented        = a->roworiented;
2262d4002b98SHong Zhang   c->nonew              = a->nonew;
2263f4259b30SLisandro Dalcin   c->solve_work         = NULL;
2264f4259b30SLisandro Dalcin   c->saved_values       = NULL;
2265f4259b30SLisandro Dalcin   c->idiag              = NULL;
2266f4259b30SLisandro Dalcin   c->ssor_work          = NULL;
2267d4002b98SHong Zhang   c->keepnonzeropattern = a->keepnonzeropattern;
2268d4002b98SHong Zhang   c->free_val           = PETSC_TRUE;
2269d4002b98SHong Zhang   c->free_colidx        = PETSC_TRUE;
2270d4002b98SHong Zhang 
2271d4002b98SHong Zhang   c->maxallocmat  = a->maxallocmat;
2272d4002b98SHong Zhang   c->maxallocrow  = a->maxallocrow;
2273d4002b98SHong Zhang   c->rlenmax      = a->rlenmax;
2274d4002b98SHong Zhang   c->nz           = a->nz;
2275d4002b98SHong Zhang   C->preallocated = PETSC_TRUE;
2276d4002b98SHong Zhang 
2277d4002b98SHong Zhang   c->nonzerorowcnt = a->nonzerorowcnt;
2278d4002b98SHong Zhang   C->nonzerostate  = A->nonzerostate;
2279d4002b98SHong Zhang 
22809566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)A)->qlist, &((PetscObject)C)->qlist));
22813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2282d4002b98SHong Zhang }
2283d4002b98SHong Zhang 
MatDuplicate_SeqSELL(Mat A,MatDuplicateOption cpvalues,Mat * B)2284d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_SeqSELL(Mat A, MatDuplicateOption cpvalues, Mat *B)
2285d71ae5a4SJacob Faibussowitsch {
2286d4002b98SHong Zhang   PetscFunctionBegin;
22879566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)A), B));
22889566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*B, A->rmap->n, A->cmap->n, A->rmap->n, A->cmap->n));
228948a46eb9SPierre Jolivet   if (!(A->rmap->n % A->rmap->bs) && !(A->cmap->n % A->cmap->bs)) PetscCall(MatSetBlockSizesFromMats(*B, A, A));
22909566063dSJacob Faibussowitsch   PetscCall(MatSetType(*B, ((PetscObject)A)->type_name));
22919566063dSJacob Faibussowitsch   PetscCall(MatDuplicateNoCreate_SeqSELL(*B, A, cpvalues, PETSC_TRUE));
22923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2293d4002b98SHong Zhang }
2294d4002b98SHong Zhang 
2295ed73aabaSBarry Smith /*MC
2296ed73aabaSBarry Smith    MATSEQSELL - MATSEQSELL = "seqsell" - A matrix type to be used for sequential sparse matrices,
22971d27aa22SBarry Smith    based on the sliced Ellpack format, {cite}`zhangellpack2018`
2298ed73aabaSBarry Smith 
229920f4b53cSBarry Smith    Options Database Key:
230011a5261eSBarry Smith . -mat_type seqsell - sets the matrix type to "`MATSEQELL` during a call to `MatSetFromOptions()`
2301ed73aabaSBarry Smith 
2302ed73aabaSBarry Smith    Level: beginner
2303ed73aabaSBarry Smith 
230494764886SPierre Jolivet .seealso: `Mat`, `MatCreateSeqSELL()`, `MATSELL`, `MATMPISELL`, `MATSEQAIJ`, `MATAIJ`, `MATMPIAIJ`
2305ed73aabaSBarry Smith M*/
2306ed73aabaSBarry Smith 
2307ed73aabaSBarry Smith /*MC
23081d27aa22SBarry Smith    MATSELL - MATSELL = "sell" - A matrix type to be used for sparse matrices, {cite}`zhangellpack2018`
2309ed73aabaSBarry Smith 
231011a5261eSBarry Smith    This matrix type is identical to `MATSEQSELL` when constructed with a single process communicator,
231111a5261eSBarry Smith    and `MATMPISELL` otherwise.  As a result, for single process communicators,
231211a5261eSBarry Smith   `MatSeqSELLSetPreallocation()` is supported, and similarly `MatMPISELLSetPreallocation()` is supported
2313ed73aabaSBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
2314ed73aabaSBarry Smith   the above preallocation routines for simplicity.
2315ed73aabaSBarry Smith 
231620f4b53cSBarry Smith    Options Database Key:
2317ed73aabaSBarry Smith . -mat_type sell - sets the matrix type to "sell" during a call to MatSetFromOptions()
2318ed73aabaSBarry Smith 
2319ed73aabaSBarry Smith   Level: beginner
2320ed73aabaSBarry Smith 
2321ed73aabaSBarry Smith   Notes:
23227de69702SBarry Smith   This format is only supported for real scalars, double precision, and 32-bit indices (the defaults).
2323ed73aabaSBarry Smith 
2324ed73aabaSBarry Smith   It can provide better performance on Intel and AMD processes with AVX2 or AVX512 support for matrices that have a similar number of
2325ed73aabaSBarry Smith   non-zeros in contiguous groups of rows. However if the computation is memory bandwidth limited it may not provide much improvement.
2326ed73aabaSBarry Smith 
2327ed73aabaSBarry Smith   Developer Notes:
2328ed73aabaSBarry Smith   On Intel (and AMD) systems some of the matrix operations use SIMD (AVX) instructions to achieve higher performance.
2329ed73aabaSBarry Smith 
2330ed73aabaSBarry Smith   The sparse matrix format is as follows. For simplicity we assume a slice size of 2, it is actually 8
2331ed73aabaSBarry Smith .vb
2332ed73aabaSBarry Smith                             (2 0  3 4)
2333ed73aabaSBarry Smith    Consider the matrix A =  (5 0  6 0)
2334ed73aabaSBarry Smith                             (0 0  7 8)
2335ed73aabaSBarry Smith                             (0 0  9 9)
2336ed73aabaSBarry Smith 
2337ed73aabaSBarry Smith    symbolically the Ellpack format can be written as
2338ed73aabaSBarry Smith 
2339ed73aabaSBarry Smith         (2 3 4 |)           (0 2 3 |)
2340ed73aabaSBarry Smith    v =  (5 6 0 |)  colidx = (0 2 2 |)
2341ed73aabaSBarry Smith         --------            ---------
2342ed73aabaSBarry Smith         (7 8 |)             (2 3 |)
2343ed73aabaSBarry Smith         (9 9 |)             (2 3 |)
2344ed73aabaSBarry Smith 
2345ed73aabaSBarry Smith     The data for 2 contiguous rows of the matrix are stored together (in column-major format) (with any left-over rows handled as a special case).
2346ed73aabaSBarry Smith     Any of the rows in a slice fewer columns than the rest of the slice (row 1 above) are padded with a previous valid column in their "extra" colidx[] locations and
2347ed73aabaSBarry Smith     zeros in their "extra" v locations so that the matrix operations do not need special code to handle different length rows within the 2 rows in a slice.
2348ed73aabaSBarry Smith 
2349ed73aabaSBarry Smith     The one-dimensional representation of v used in the code is (2 5 3 6 4 0 7 9 8 9)  and for colidx is (0 0 2 2 3 2 2 2 3 3)
2350ed73aabaSBarry Smith 
2351ed73aabaSBarry Smith .ve
2352ed73aabaSBarry Smith 
23531d27aa22SBarry Smith     See `MatMult_SeqSELL()` for how this format is used with the SIMD operations to achieve high performance.
2354ed73aabaSBarry Smith 
235594764886SPierre Jolivet .seealso: `Mat`, `MatCreateSeqSELL()`, `MatCreateSeqAIJ()`, `MatCreateSELL()`, `MATSEQSELL`, `MATMPISELL`, `MATSEQAIJ`, `MATMPIAIJ`, `MATAIJ`
2356ed73aabaSBarry Smith M*/
2357ed73aabaSBarry Smith 
23585d83a8b1SBarry Smith /*@
235911a5261eSBarry Smith   MatCreateSeqSELL - Creates a sparse matrix in `MATSEQSELL` format.
2360d4002b98SHong Zhang 
23612ef1f0ffSBarry Smith   Collective
2362d4002b98SHong Zhang 
2363d4002b98SHong Zhang   Input Parameters:
236411a5261eSBarry Smith + comm    - MPI communicator, set to `PETSC_COMM_SELF`
2365d4002b98SHong Zhang . m       - number of rows
2366d4002b98SHong Zhang . n       - number of columns
236720f4b53cSBarry Smith . rlenmax - maximum number of nonzeros in a row, ignored if `rlen` is provided
236820f4b53cSBarry Smith - rlen    - array containing the number of nonzeros in the various rows (possibly different for each row) or NULL
2369d4002b98SHong Zhang 
2370d4002b98SHong Zhang   Output Parameter:
2371d4002b98SHong Zhang . A - the matrix
2372d4002b98SHong Zhang 
237320f4b53cSBarry Smith   Level: intermediate
237420f4b53cSBarry Smith 
237520f4b53cSBarry Smith   Notes:
237611a5261eSBarry Smith   It is recommended that one use the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
2377f6f02116SRichard Tran Mills   MatXXXXSetPreallocation() paradigm instead of this routine directly.
237811a5261eSBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqSELLSetPreallocation()`]
2379d4002b98SHong Zhang 
238020f4b53cSBarry Smith   Specify the preallocated storage with either `rlenmax` or `rlen` (not both).
238120f4b53cSBarry Smith   Set `rlenmax` = `PETSC_DEFAULT` and `rlen` = `NULL` for PETSc to control dynamic memory
238220f4b53cSBarry Smith   allocation.
2383d4002b98SHong Zhang 
2384fe59aa6dSJacob Faibussowitsch .seealso: `Mat`, `MATSEQSELL`, `MatCreate()`, `MatCreateSELL()`, `MatSetValues()`, `MatSeqSELLSetPreallocation()`, `MATSELL`, `MATMPISELL`
2385d4002b98SHong Zhang  @*/
MatCreateSeqSELL(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt rlenmax,const PetscInt rlen[],Mat * A)238620f4b53cSBarry Smith PetscErrorCode MatCreateSeqSELL(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt rlenmax, const PetscInt rlen[], Mat *A)
2387d71ae5a4SJacob Faibussowitsch {
2388d4002b98SHong Zhang   PetscFunctionBegin;
23899566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
23909566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, m, n));
23919566063dSJacob Faibussowitsch   PetscCall(MatSetType(*A, MATSEQSELL));
239220f4b53cSBarry Smith   PetscCall(MatSeqSELLSetPreallocation_SeqSELL(*A, rlenmax, rlen));
23933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2394d4002b98SHong Zhang }
2395d4002b98SHong Zhang 
MatEqual_SeqSELL(Mat A,Mat B,PetscBool * flg)2396d71ae5a4SJacob Faibussowitsch PetscErrorCode MatEqual_SeqSELL(Mat A, Mat B, PetscBool *flg)
2397d71ae5a4SJacob Faibussowitsch {
2398d4002b98SHong Zhang   Mat_SeqSELL *a = (Mat_SeqSELL *)A->data, *b = (Mat_SeqSELL *)B->data;
2399d4002b98SHong Zhang   PetscInt     totalslices = a->totalslices;
2400d4002b98SHong Zhang 
2401d4002b98SHong Zhang   PetscFunctionBegin;
2402d4002b98SHong Zhang   /* If the  matrix dimensions are not equal,or no of nonzeros */
2403d4002b98SHong Zhang   if ((A->rmap->n != B->rmap->n) || (A->cmap->n != B->cmap->n) || (a->nz != b->nz) || (a->rlenmax != b->rlenmax)) {
2404d4002b98SHong Zhang     *flg = PETSC_FALSE;
24053ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2406d4002b98SHong Zhang   }
2407d4002b98SHong Zhang   /* if the a->colidx are the same */
24089566063dSJacob Faibussowitsch   PetscCall(PetscArraycmp(a->colidx, b->colidx, a->sliidx[totalslices], flg));
24093ba16761SJacob Faibussowitsch   if (!*flg) PetscFunctionReturn(PETSC_SUCCESS);
2410d4002b98SHong Zhang   /* if a->val are the same */
24119566063dSJacob Faibussowitsch   PetscCall(PetscArraycmp(a->val, b->val, a->sliidx[totalslices], flg));
24123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2413d4002b98SHong Zhang }
2414d4002b98SHong Zhang 
MatConjugate_SeqSELL(Mat A)2415d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConjugate_SeqSELL(Mat A)
2416d71ae5a4SJacob Faibussowitsch {
2417d4002b98SHong Zhang   Mat_SeqSELL *a   = (Mat_SeqSELL *)A->data;
2418d4002b98SHong Zhang   PetscScalar *val = a->val;
2419d4002b98SHong Zhang 
2420d4002b98SHong Zhang   PetscFunctionBegin;
2421*65d0d443SPierre Jolivet   for (PetscInt i = 0; i < a->sliidx[a->totalslices]; i++) val[i] = PetscConj(val[i]);
2422773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
24232d1451d4SHong Zhang   if (A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) A->offloadmask = PETSC_OFFLOAD_CPU;
24242d1451d4SHong Zhang #endif
24253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2426d4002b98SHong Zhang }
2427