1d4002b98SHong Zhang /*
2d4002b98SHong Zhang Defines the basic matrix operations for the SELL matrix storage format.
3d4002b98SHong Zhang */
4d4002b98SHong Zhang #include <../src/mat/impls/sell/seq/sell.h> /*I "petscmat.h" I*/
5d4002b98SHong Zhang #include <petscblaslapack.h>
6d4002b98SHong Zhang #include <petsc/private/kernels/blocktranspose.h>
7ed73aabaSBarry Smith
8ed73aabaSBarry Smith static PetscBool cited = PETSC_FALSE;
99371c9d4SSatish Balay static const char citation[] = "@inproceedings{ZhangELLPACK2018,\n"
10ed73aabaSBarry Smith " author = {Hong Zhang and Richard T. Mills and Karl Rupp and Barry F. Smith},\n"
11ed73aabaSBarry Smith " title = {Vectorized Parallel Sparse Matrix-Vector Multiplication in {PETSc} Using {AVX-512}},\n"
12ed73aabaSBarry Smith " booktitle = {Proceedings of the 47th International Conference on Parallel Processing},\n"
13ed73aabaSBarry Smith " year = 2018\n"
14ed73aabaSBarry Smith "}\n";
15ed73aabaSBarry Smith
165f70456aSHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && (defined(__AVX512F__) || (defined(__AVX2__) && defined(__FMA__)) || defined(__AVX__)) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
174243e2ceSHong Zhang
18d4002b98SHong Zhang #include <immintrin.h>
19d4002b98SHong Zhang
20d4002b98SHong Zhang #if !defined(_MM_SCALE_8)
21d4002b98SHong Zhang #define _MM_SCALE_8 8
22d4002b98SHong Zhang #endif
23d4002b98SHong Zhang
24d4002b98SHong Zhang #if defined(__AVX512F__)
25d4002b98SHong Zhang /* these do not work
26d4002b98SHong Zhang vec_idx = _mm512_loadunpackhi_epi32(vec_idx,acolidx);
27d4002b98SHong Zhang vec_vals = _mm512_loadunpackhi_pd(vec_vals,aval);
28d4002b98SHong Zhang */
29d4002b98SHong Zhang #define AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y) \
30d4002b98SHong Zhang /* if the mask bit is set, copy from acolidx, otherwise from vec_idx */ \
31ef588d5cSRichard Tran Mills vec_idx = _mm256_loadu_si256((__m256i const *)acolidx); \
32ef588d5cSRichard Tran Mills vec_vals = _mm512_loadu_pd(aval); \
33d4002b98SHong Zhang vec_x = _mm512_i32gather_pd(vec_idx, x, _MM_SCALE_8); \
34a48a6482SHong Zhang vec_y = _mm512_fmadd_pd(vec_x, vec_vals, vec_y)
355f70456aSHong Zhang #elif defined(__AVX2__) && defined(__FMA__)
36a48a6482SHong Zhang #define AVX2_Mult_Private(vec_idx, vec_x, vec_vals, vec_y) \
37ef588d5cSRichard Tran Mills vec_vals = _mm256_loadu_pd(aval); \
38ef588d5cSRichard Tran Mills vec_idx = _mm_loadu_si128((__m128i const *)acolidx); /* SSE2 */ \
39a48a6482SHong Zhang vec_x = _mm256_i32gather_pd(x, vec_idx, _MM_SCALE_8); \
40a48a6482SHong Zhang vec_y = _mm256_fmadd_pd(vec_x, vec_vals, vec_y)
41d4002b98SHong Zhang #endif
42d4002b98SHong Zhang #endif /* PETSC_HAVE_IMMINTRIN_H */
43d4002b98SHong Zhang
445d83a8b1SBarry Smith /*@
45d4002b98SHong Zhang MatSeqSELLSetPreallocation - For good matrix assembly performance
4620f4b53cSBarry Smith the user should preallocate the matrix storage by setting the parameter `nz`
4720f4b53cSBarry Smith (or the array `nnz`).
48d4002b98SHong Zhang
49d083f849SBarry Smith Collective
50d4002b98SHong Zhang
51d4002b98SHong Zhang Input Parameters:
5211a5261eSBarry Smith + B - The `MATSEQSELL` matrix
5320f4b53cSBarry Smith . rlenmax - number of nonzeros per row (same for all rows), ignored if `rlen` is provided
5420f4b53cSBarry Smith - rlen - array containing the number of nonzeros in the various rows (possibly different for each row) or `NULL`
5567be906fSBarry Smith
5667be906fSBarry Smith Level: intermediate
57d4002b98SHong Zhang
58d4002b98SHong Zhang Notes:
5967be906fSBarry Smith Specify the preallocated storage with either `rlenmax` or `rlen` (not both).
6067be906fSBarry Smith Set `rlenmax` = `PETSC_DEFAULT` and `rlen` = `NULL` for PETSc to control dynamic memory
6120f4b53cSBarry Smith allocation.
62d4002b98SHong Zhang
6311a5261eSBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was;
64d4002b98SHong Zhang for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
6567be906fSBarry Smith You can also run with the option `-info` and look for messages with the string
66d4002b98SHong Zhang malloc in them to see if additional memory allocation was needed.
67d4002b98SHong Zhang
68fe59aa6dSJacob Faibussowitsch Developer Notes:
6967be906fSBarry Smith Use `rlenmax` of `MAT_SKIP_ALLOCATION` to not allocate any space for the matrix
70d4002b98SHong Zhang entries or columns indices.
71d4002b98SHong Zhang
72c7ee91abSRichard Tran Mills The maximum number of nonzeos in any row should be as accurate as possible.
73c7ee91abSRichard Tran Mills If it is underestimated, you will get bad performance due to reallocation
7467be906fSBarry Smith (`MatSeqXSELLReallocateSELL()`).
75d4002b98SHong Zhang
7667be906fSBarry Smith .seealso: `Mat`, `MATSEQSELL`, `MATSELL`, `MatCreate()`, `MatCreateSELL()`, `MatSetValues()`, `MatGetInfo()`
77d4002b98SHong Zhang @*/
MatSeqSELLSetPreallocation(Mat B,PetscInt rlenmax,const PetscInt rlen[])78d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLSetPreallocation(Mat B, PetscInt rlenmax, const PetscInt rlen[])
79d71ae5a4SJacob Faibussowitsch {
80d4002b98SHong Zhang PetscFunctionBegin;
81d4002b98SHong Zhang PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
82d4002b98SHong Zhang PetscValidType(B, 1);
83cac4c232SBarry Smith PetscTryMethod(B, "MatSeqSELLSetPreallocation_C", (Mat, PetscInt, const PetscInt[]), (B, rlenmax, rlen));
843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
85d4002b98SHong Zhang }
86d4002b98SHong Zhang
MatSeqSELLSetPreallocation_SeqSELL(Mat B,PetscInt maxallocrow,const PetscInt rlen[])87d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLSetPreallocation_SeqSELL(Mat B, PetscInt maxallocrow, const PetscInt rlen[])
88d71ae5a4SJacob Faibussowitsch {
89d4002b98SHong Zhang Mat_SeqSELL *b;
90d4002b98SHong Zhang PetscInt i, j, totalslices;
91773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
924e58db63SHong Zhang PetscInt rlenmax = 0;
934e58db63SHong Zhang #endif
94d4002b98SHong Zhang PetscBool skipallocation = PETSC_FALSE, realalloc = PETSC_FALSE;
95d4002b98SHong Zhang
96d4002b98SHong Zhang PetscFunctionBegin;
97d4002b98SHong Zhang if (maxallocrow >= 0 || rlen) realalloc = PETSC_TRUE;
98d4002b98SHong Zhang if (maxallocrow == MAT_SKIP_ALLOCATION) {
99d4002b98SHong Zhang skipallocation = PETSC_TRUE;
100d4002b98SHong Zhang maxallocrow = 0;
101d4002b98SHong Zhang }
102d4002b98SHong Zhang
1039566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap));
1049566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap));
105d4002b98SHong Zhang
106d4002b98SHong Zhang /* FIXME: if one preallocates more space than needed, the matrix does not shrink automatically, but for best performance it should */
107d4002b98SHong Zhang if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 5;
10808401ef6SPierre Jolivet PetscCheck(maxallocrow >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "maxallocrow cannot be less than 0: value %" PetscInt_FMT, maxallocrow);
109d4002b98SHong Zhang if (rlen) {
110d4002b98SHong Zhang for (i = 0; i < B->rmap->n; i++) {
11108401ef6SPierre Jolivet PetscCheck(rlen[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "rlen cannot be less than 0: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, rlen[i]);
11208401ef6SPierre Jolivet PetscCheck(rlen[i] <= B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "rlen cannot be greater than row length: local row %" PetscInt_FMT " value %" PetscInt_FMT " rowlength %" PetscInt_FMT, i, rlen[i], B->cmap->n);
113d4002b98SHong Zhang }
114d4002b98SHong Zhang }
115d4002b98SHong Zhang
116d4002b98SHong Zhang B->preallocated = PETSC_TRUE;
117d4002b98SHong Zhang
118d4002b98SHong Zhang b = (Mat_SeqSELL *)B->data;
119d4002b98SHong Zhang
12007e43b41SHong Zhang if (!b->sliceheight) { /* not set yet */
121773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
12207e43b41SHong Zhang b->sliceheight = 16;
12307e43b41SHong Zhang #else
12407e43b41SHong Zhang b->sliceheight = 8;
12507e43b41SHong Zhang #endif
12607e43b41SHong Zhang }
12707e43b41SHong Zhang totalslices = PetscCeilInt(B->rmap->n, b->sliceheight);
128d4002b98SHong Zhang b->totalslices = totalslices;
129d4002b98SHong Zhang if (!skipallocation) {
13007e43b41SHong Zhang if (B->rmap->n % b->sliceheight) PetscCall(PetscInfo(B, "Padding rows to the SEQSELL matrix because the number of rows is not the multiple of the slice height (value %" PetscInt_FMT ")\n", B->rmap->n));
131d4002b98SHong Zhang
132d4002b98SHong Zhang if (!b->sliidx) { /* sliidx gives the starting index of each slice, the last element is the total space allocated */
1339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(totalslices + 1, &b->sliidx));
134d4002b98SHong Zhang }
135d4002b98SHong Zhang if (!rlen) { /* if rlen is not provided, allocate same space for all the slices */
136d4002b98SHong Zhang if (maxallocrow == PETSC_DEFAULT || maxallocrow == PETSC_DECIDE) maxallocrow = 10;
137d4002b98SHong Zhang else if (maxallocrow < 0) maxallocrow = 1;
138773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
1394e58db63SHong Zhang rlenmax = maxallocrow;
1404e58db63SHong Zhang /* Pad the slice to DEVICE_MEM_ALIGN */
1414e58db63SHong Zhang while (b->sliceheight * maxallocrow % DEVICE_MEM_ALIGN) maxallocrow++;
1424e58db63SHong Zhang #endif
14307e43b41SHong Zhang for (i = 0; i <= totalslices; i++) b->sliidx[i] = b->sliceheight * i * maxallocrow;
144d4002b98SHong Zhang } else {
145773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
1464e58db63SHong Zhang PetscInt mul = DEVICE_MEM_ALIGN / b->sliceheight;
1474e58db63SHong Zhang #endif
148d4002b98SHong Zhang maxallocrow = 0;
149d4002b98SHong Zhang b->sliidx[0] = 0;
150d4002b98SHong Zhang for (i = 1; i < totalslices; i++) {
151d4002b98SHong Zhang b->sliidx[i] = 0;
152ac530a7eSPierre Jolivet for (j = 0; j < b->sliceheight; j++) b->sliidx[i] = PetscMax(b->sliidx[i], rlen[b->sliceheight * (i - 1) + j]);
153773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
154773bf0f6SHong Zhang if (mul != 0) { /* Pad the slice to DEVICE_MEM_ALIGN if sliceheight < DEVICE_MEM_ALIGN */
1554e58db63SHong Zhang rlenmax = PetscMax(b->sliidx[i], rlenmax);
1564e58db63SHong Zhang b->sliidx[i] = ((b->sliidx[i] - 1) / mul + 1) * mul;
157773bf0f6SHong Zhang }
1584e58db63SHong Zhang #endif
159d4002b98SHong Zhang maxallocrow = PetscMax(b->sliidx[i], maxallocrow);
16007e43b41SHong Zhang PetscCall(PetscIntSumError(b->sliidx[i - 1], b->sliceheight * b->sliidx[i], &b->sliidx[i]));
161d4002b98SHong Zhang }
162d4002b98SHong Zhang /* last slice */
163d4002b98SHong Zhang b->sliidx[totalslices] = 0;
16407e43b41SHong Zhang for (j = b->sliceheight * (totalslices - 1); j < B->rmap->n; j++) b->sliidx[totalslices] = PetscMax(b->sliidx[totalslices], rlen[j]);
165773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
166773bf0f6SHong Zhang if (mul != 0) {
1674e58db63SHong Zhang rlenmax = PetscMax(b->sliidx[i], rlenmax);
1684e58db63SHong Zhang b->sliidx[totalslices] = ((b->sliidx[totalslices] - 1) / mul + 1) * mul;
169773bf0f6SHong Zhang }
1704e58db63SHong Zhang #endif
171d4002b98SHong Zhang maxallocrow = PetscMax(b->sliidx[totalslices], maxallocrow);
17207e43b41SHong Zhang b->sliidx[totalslices] = b->sliidx[totalslices - 1] + b->sliceheight * b->sliidx[totalslices];
173d4002b98SHong Zhang }
174d4002b98SHong Zhang
175d4002b98SHong Zhang /* allocate space for val, colidx, rlen */
176d4002b98SHong Zhang /* FIXME: should B's old memory be unlogged? */
1779566063dSJacob Faibussowitsch PetscCall(MatSeqXSELLFreeSELL(B, &b->val, &b->colidx));
178d4002b98SHong Zhang /* FIXME: assuming an element of the bit array takes 8 bits */
1799566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(b->sliidx[totalslices], &b->val, b->sliidx[totalslices], &b->colidx));
180d4002b98SHong Zhang /* b->rlen will count nonzeros in each row so far. We dont copy rlen to b->rlen because the matrix has not been set. */
18107e43b41SHong Zhang PetscCall(PetscCalloc1(b->sliceheight * totalslices, &b->rlen));
182d4002b98SHong Zhang
183d4002b98SHong Zhang b->singlemalloc = PETSC_TRUE;
184d4002b98SHong Zhang b->free_val = PETSC_TRUE;
185d4002b98SHong Zhang b->free_colidx = PETSC_TRUE;
186d4002b98SHong Zhang } else {
187d4002b98SHong Zhang b->free_val = PETSC_FALSE;
188d4002b98SHong Zhang b->free_colidx = PETSC_FALSE;
189d4002b98SHong Zhang }
190d4002b98SHong Zhang
191d4002b98SHong Zhang b->nz = 0;
192d4002b98SHong Zhang b->maxallocrow = maxallocrow;
193773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
1944e58db63SHong Zhang b->rlenmax = rlenmax;
1954e58db63SHong Zhang #else
196d4002b98SHong Zhang b->rlenmax = maxallocrow;
1974e58db63SHong Zhang #endif
198d4002b98SHong Zhang b->maxallocmat = b->sliidx[totalslices];
199d4002b98SHong Zhang B->info.nz_unneeded = (double)b->maxallocmat;
2001baa6e33SBarry Smith if (realalloc) PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE));
2013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
202d4002b98SHong Zhang }
203d4002b98SHong Zhang
MatGetRow_SeqSELL(Mat A,PetscInt row,PetscInt * nz,PetscInt ** idx,PetscScalar ** v)204ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRow_SeqSELL(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
205d71ae5a4SJacob Faibussowitsch {
2066108893eSStefano Zampini Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
2076108893eSStefano Zampini PetscInt shift;
2086108893eSStefano Zampini
2096108893eSStefano Zampini PetscFunctionBegin;
210aed4548fSBarry Smith PetscCheck(row >= 0 && row < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range", row);
2116108893eSStefano Zampini if (nz) *nz = a->rlen[row];
21207e43b41SHong Zhang shift = a->sliidx[row / a->sliceheight] + (row % a->sliceheight);
2133a7d0413SPierre Jolivet if (!a->getrowcols) PetscCall(PetscMalloc2(a->rlenmax, &a->getrowcols, a->rlenmax, &a->getrowvals));
2146108893eSStefano Zampini if (idx) {
2156108893eSStefano Zampini PetscInt j;
21607e43b41SHong Zhang for (j = 0; j < a->rlen[row]; j++) a->getrowcols[j] = a->colidx[shift + a->sliceheight * j];
2176108893eSStefano Zampini *idx = a->getrowcols;
2186108893eSStefano Zampini }
2196108893eSStefano Zampini if (v) {
2206108893eSStefano Zampini PetscInt j;
22107e43b41SHong Zhang for (j = 0; j < a->rlen[row]; j++) a->getrowvals[j] = a->val[shift + a->sliceheight * j];
2226108893eSStefano Zampini *v = a->getrowvals;
2236108893eSStefano Zampini }
2243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2256108893eSStefano Zampini }
2266108893eSStefano Zampini
MatRestoreRow_SeqSELL(Mat A,PetscInt row,PetscInt * nz,PetscInt ** idx,PetscScalar ** v)227ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRow_SeqSELL(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
228d71ae5a4SJacob Faibussowitsch {
2296108893eSStefano Zampini PetscFunctionBegin;
2303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2316108893eSStefano Zampini }
2326108893eSStefano Zampini
MatConvert_SeqSELL_SeqAIJ(Mat A,MatType newtype,MatReuse reuse,Mat * newmat)233d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConvert_SeqSELL_SeqAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
234d71ae5a4SJacob Faibussowitsch {
235d4002b98SHong Zhang Mat B;
236d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
237e3f1f374SStefano Zampini PetscInt i;
238d4002b98SHong Zhang
239d4002b98SHong Zhang PetscFunctionBegin;
240ad013a7bSRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) {
241ad013a7bSRichard Tran Mills B = *newmat;
2429566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(B));
243ad013a7bSRichard Tran Mills } else {
2449566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
2459566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N));
2469566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATSEQAIJ));
2479566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, a->rlen));
248ad013a7bSRichard Tran Mills }
249d4002b98SHong Zhang
250e3f1f374SStefano Zampini for (i = 0; i < A->rmap->n; i++) {
251e108cb99SStefano Zampini PetscInt nz = 0, *cols = NULL;
252e108cb99SStefano Zampini PetscScalar *vals = NULL;
253e3f1f374SStefano Zampini
2549566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqSELL(A, i, &nz, &cols, &vals));
2559566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, 1, &i, nz, cols, vals, INSERT_VALUES));
2569566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqSELL(A, i, &nz, &cols, &vals));
257d4002b98SHong Zhang }
258e3f1f374SStefano Zampini
2599566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
2609566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
261d4002b98SHong Zhang B->rmap->bs = A->rmap->bs;
262d4002b98SHong Zhang
263d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) {
2649566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B));
265d4002b98SHong Zhang } else {
266d4002b98SHong Zhang *newmat = B;
267d4002b98SHong Zhang }
2683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
269d4002b98SHong Zhang }
270d4002b98SHong Zhang
271d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/aij.h>
272d4002b98SHong Zhang
MatConvert_SeqAIJ_SeqSELL(Mat A,MatType newtype,MatReuse reuse,Mat * newmat)273d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConvert_SeqAIJ_SeqSELL(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
274d71ae5a4SJacob Faibussowitsch {
275d4002b98SHong Zhang Mat B;
276d4002b98SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data;
277d4002b98SHong Zhang PetscInt *ai = a->i, m = A->rmap->N, n = A->cmap->N, i, *rowlengths, row, ncols;
278d4002b98SHong Zhang const PetscInt *cols;
279d4002b98SHong Zhang const PetscScalar *vals;
280d4002b98SHong Zhang
281d4002b98SHong Zhang PetscFunctionBegin;
282ad013a7bSRichard Tran Mills if (reuse == MAT_REUSE_MATRIX) {
283ad013a7bSRichard Tran Mills B = *newmat;
284ad013a7bSRichard Tran Mills } else {
285d5e5b2e5SBarry Smith if (PetscDefined(USE_DEBUG) || !a->ilen) {
2869566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlengths));
287ad540459SPierre Jolivet for (i = 0; i < m; i++) rowlengths[i] = ai[i + 1] - ai[i];
288d5e5b2e5SBarry Smith }
289d5e5b2e5SBarry Smith if (PetscDefined(USE_DEBUG) && a->ilen) {
290d5e5b2e5SBarry Smith PetscBool eq;
291418fb43bSPierre Jolivet PetscCall(PetscArraycmp(rowlengths, a->ilen, m, &eq));
29228b400f6SJacob Faibussowitsch PetscCheck(eq, PETSC_COMM_SELF, PETSC_ERR_PLIB, "SeqAIJ ilen array incorrect");
2939566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlengths));
294d5e5b2e5SBarry Smith rowlengths = a->ilen;
295d5e5b2e5SBarry Smith } else if (a->ilen) rowlengths = a->ilen;
2969566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
2979566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, m, n, m, n));
2989566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATSEQSELL));
2999566063dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(B, 0, rowlengths));
3009566063dSJacob Faibussowitsch if (rowlengths != a->ilen) PetscCall(PetscFree(rowlengths));
301ad013a7bSRichard Tran Mills }
302d4002b98SHong Zhang
303d4002b98SHong Zhang for (row = 0; row < m; row++) {
3049566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(A, row, &ncols, (PetscInt **)&cols, (PetscScalar **)&vals));
3059566063dSJacob Faibussowitsch PetscCall(MatSetValues_SeqSELL(B, 1, &row, ncols, cols, vals, INSERT_VALUES));
3069566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(A, row, &ncols, (PetscInt **)&cols, (PetscScalar **)&vals));
307d4002b98SHong Zhang }
3089566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
3099566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
310d4002b98SHong Zhang B->rmap->bs = A->rmap->bs;
311d4002b98SHong Zhang
312d4002b98SHong Zhang if (reuse == MAT_INPLACE_MATRIX) {
3139566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B));
314d4002b98SHong Zhang } else {
315d4002b98SHong Zhang *newmat = B;
316d4002b98SHong Zhang }
3173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
318d4002b98SHong Zhang }
319d4002b98SHong Zhang
MatMult_SeqSELL(Mat A,Vec xx,Vec yy)320d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMult_SeqSELL(Mat A, Vec xx, Vec yy)
321d71ae5a4SJacob Faibussowitsch {
322d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
323d4002b98SHong Zhang PetscScalar *y;
324d4002b98SHong Zhang const PetscScalar *x;
325d4002b98SHong Zhang const MatScalar *aval = a->val;
326d4002b98SHong Zhang PetscInt totalslices = a->totalslices;
327d4002b98SHong Zhang const PetscInt *acolidx = a->colidx;
3287285fed1SHong Zhang PetscInt i, j;
329d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
330d4002b98SHong Zhang __m512d vec_x, vec_y, vec_vals;
331d4002b98SHong Zhang __m256i vec_idx;
332d4002b98SHong Zhang __mmask8 mask;
333d4002b98SHong Zhang __m512d vec_x2, vec_y2, vec_vals2, vec_x3, vec_y3, vec_vals3, vec_x4, vec_y4, vec_vals4;
334d4002b98SHong Zhang __m256i vec_idx2, vec_idx3, vec_idx4;
3355f70456aSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(__FMA__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
336a48a6482SHong Zhang __m128i vec_idx;
337a48a6482SHong Zhang __m256d vec_x, vec_y, vec_y2, vec_vals;
338a48a6482SHong Zhang MatScalar yval;
339a48a6482SHong Zhang PetscInt r, rows_left, row, nnz_in_row;
34021cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
341d4002b98SHong Zhang __m128d vec_x_tmp;
342d4002b98SHong Zhang __m256d vec_x, vec_y, vec_y2, vec_vals;
343d4002b98SHong Zhang MatScalar yval;
344d4002b98SHong Zhang PetscInt r, rows_left, row, nnz_in_row;
345d4002b98SHong Zhang #else
34607e43b41SHong Zhang PetscInt k, sliceheight = a->sliceheight;
34707e43b41SHong Zhang PetscScalar *sum;
348d4002b98SHong Zhang #endif
349d4002b98SHong Zhang
350d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT)
351d4002b98SHong Zhang #pragma disjoint(*x, *y, *aval)
352d4002b98SHong Zhang #endif
353d4002b98SHong Zhang
354d4002b98SHong Zhang PetscFunctionBegin;
3559566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x));
3569566063dSJacob Faibussowitsch PetscCall(VecGetArray(yy, &y));
357d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
35807e43b41SHong Zhang PetscCheck(a->sliceheight == 8, PETSC_COMM_SELF, PETSC_ERR_SUP, "The kernel requires a slice height of 8, but the input matrix has a slice height of %" PetscInt_FMT, a->sliceheight);
359d4002b98SHong Zhang for (i = 0; i < totalslices; i++) { /* loop over slices */
360d4002b98SHong Zhang PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
361d4002b98SHong Zhang PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
362d4002b98SHong Zhang
363d4002b98SHong Zhang vec_y = _mm512_setzero_pd();
364d4002b98SHong Zhang vec_y2 = _mm512_setzero_pd();
365d4002b98SHong Zhang vec_y3 = _mm512_setzero_pd();
366d4002b98SHong Zhang vec_y4 = _mm512_setzero_pd();
367d4002b98SHong Zhang
368da81f932SPierre Jolivet j = a->sliidx[i] >> 3; /* 8 bytes are read at each time, corresponding to a slice column */
369d4002b98SHong Zhang switch ((a->sliidx[i + 1] - a->sliidx[i]) / 8 & 3) {
370d4002b98SHong Zhang case 3:
371d4002b98SHong Zhang AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
3729371c9d4SSatish Balay acolidx += 8;
3739371c9d4SSatish Balay aval += 8;
374d4002b98SHong Zhang AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2);
3759371c9d4SSatish Balay acolidx += 8;
3769371c9d4SSatish Balay aval += 8;
377d4002b98SHong Zhang AVX512_Mult_Private(vec_idx3, vec_x3, vec_vals3, vec_y3);
3789371c9d4SSatish Balay acolidx += 8;
3799371c9d4SSatish Balay aval += 8;
380d4002b98SHong Zhang j += 3;
381d4002b98SHong Zhang break;
382d4002b98SHong Zhang case 2:
383d4002b98SHong Zhang AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
3849371c9d4SSatish Balay acolidx += 8;
3859371c9d4SSatish Balay aval += 8;
386d4002b98SHong Zhang AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2);
3879371c9d4SSatish Balay acolidx += 8;
3889371c9d4SSatish Balay aval += 8;
389d4002b98SHong Zhang j += 2;
390d4002b98SHong Zhang break;
391d4002b98SHong Zhang case 1:
392d4002b98SHong Zhang AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
3939371c9d4SSatish Balay acolidx += 8;
3949371c9d4SSatish Balay aval += 8;
395d4002b98SHong Zhang j += 1;
396d4002b98SHong Zhang break;
397d4002b98SHong Zhang }
398d4002b98SHong Zhang #pragma novector
399d4002b98SHong Zhang for (; j < (a->sliidx[i + 1] >> 3); j += 4) {
400d4002b98SHong Zhang AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
4019371c9d4SSatish Balay acolidx += 8;
4029371c9d4SSatish Balay aval += 8;
403d4002b98SHong Zhang AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2);
4049371c9d4SSatish Balay acolidx += 8;
4059371c9d4SSatish Balay aval += 8;
406d4002b98SHong Zhang AVX512_Mult_Private(vec_idx3, vec_x3, vec_vals3, vec_y3);
4079371c9d4SSatish Balay acolidx += 8;
4089371c9d4SSatish Balay aval += 8;
409d4002b98SHong Zhang AVX512_Mult_Private(vec_idx4, vec_x4, vec_vals4, vec_y4);
4109371c9d4SSatish Balay acolidx += 8;
4119371c9d4SSatish Balay aval += 8;
412d4002b98SHong Zhang }
413d4002b98SHong Zhang
414d4002b98SHong Zhang vec_y = _mm512_add_pd(vec_y, vec_y2);
415d4002b98SHong Zhang vec_y = _mm512_add_pd(vec_y, vec_y3);
416d4002b98SHong Zhang vec_y = _mm512_add_pd(vec_y, vec_y4);
417d4002b98SHong Zhang if (i == totalslices - 1 && A->rmap->n & 0x07) { /* if last slice has padding rows */
418d4002b98SHong Zhang mask = (__mmask8)(0xff >> (8 - (A->rmap->n & 0x07)));
419ef588d5cSRichard Tran Mills _mm512_mask_storeu_pd(&y[8 * i], mask, vec_y);
420d4002b98SHong Zhang } else {
421ef588d5cSRichard Tran Mills _mm512_storeu_pd(&y[8 * i], vec_y);
422d4002b98SHong Zhang }
423d4002b98SHong Zhang }
4245f70456aSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(__FMA__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
42507e43b41SHong Zhang PetscCheck(a->sliceheight == 8, PETSC_COMM_SELF, PETSC_ERR_SUP, "The kernel requires a slice height of 8, but the input matrix has a slice height of %" PetscInt_FMT, a->sliceheight);
426a48a6482SHong Zhang for (i = 0; i < totalslices; i++) { /* loop over full slices */
427a48a6482SHong Zhang PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
428a48a6482SHong Zhang PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
429a48a6482SHong Zhang
430a48a6482SHong Zhang /* last slice may have padding rows. Don't use vectorization. */
431a48a6482SHong Zhang if (i == totalslices - 1 && (A->rmap->n & 0x07)) {
432a48a6482SHong Zhang rows_left = A->rmap->n - 8 * i;
433a48a6482SHong Zhang for (r = 0; r < rows_left; ++r) {
434a48a6482SHong Zhang yval = (MatScalar)0;
435a48a6482SHong Zhang row = 8 * i + r;
436a48a6482SHong Zhang nnz_in_row = a->rlen[row];
437a48a6482SHong Zhang for (j = 0; j < nnz_in_row; ++j) yval += aval[8 * j + r] * x[acolidx[8 * j + r]];
438a48a6482SHong Zhang y[row] = yval;
439a48a6482SHong Zhang }
440a48a6482SHong Zhang break;
441a48a6482SHong Zhang }
442a48a6482SHong Zhang
443a48a6482SHong Zhang vec_y = _mm256_setzero_pd();
444a48a6482SHong Zhang vec_y2 = _mm256_setzero_pd();
445a48a6482SHong Zhang
446a48a6482SHong Zhang /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */
447a48a6482SHong Zhang #pragma novector
448a48a6482SHong Zhang #pragma unroll(2)
449a48a6482SHong Zhang for (j = a->sliidx[i]; j < a->sliidx[i + 1]; j += 8) {
450a48a6482SHong Zhang AVX2_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
4519371c9d4SSatish Balay aval += 4;
4529371c9d4SSatish Balay acolidx += 4;
453a48a6482SHong Zhang AVX2_Mult_Private(vec_idx, vec_x, vec_vals, vec_y2);
4549371c9d4SSatish Balay aval += 4;
4559371c9d4SSatish Balay acolidx += 4;
456a48a6482SHong Zhang }
457a48a6482SHong Zhang
458ef588d5cSRichard Tran Mills _mm256_storeu_pd(y + i * 8, vec_y);
459ef588d5cSRichard Tran Mills _mm256_storeu_pd(y + i * 8 + 4, vec_y2);
460a48a6482SHong Zhang }
46121cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
46207e43b41SHong Zhang PetscCheck(a->sliceheight == 8, PETSC_COMM_SELF, PETSC_ERR_SUP, "The kernel requires a slice height of 8, but the input matrix has a slice height of %" PetscInt_FMT, a->sliceheight);
463d4002b98SHong Zhang for (i = 0; i < totalslices; i++) { /* loop over full slices */
464d4002b98SHong Zhang PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
465d4002b98SHong Zhang PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
466d4002b98SHong Zhang
467d4002b98SHong Zhang vec_y = _mm256_setzero_pd();
468d4002b98SHong Zhang vec_y2 = _mm256_setzero_pd();
469d4002b98SHong Zhang
470d4002b98SHong Zhang /* last slice may have padding rows. Don't use vectorization. */
471d4002b98SHong Zhang if (i == totalslices - 1 && (A->rmap->n & 0x07)) {
472d4002b98SHong Zhang rows_left = A->rmap->n - 8 * i;
473d4002b98SHong Zhang for (r = 0; r < rows_left; ++r) {
474d4002b98SHong Zhang yval = (MatScalar)0;
475d4002b98SHong Zhang row = 8 * i + r;
476d4002b98SHong Zhang nnz_in_row = a->rlen[row];
477d4002b98SHong Zhang for (j = 0; j < nnz_in_row; ++j) yval += aval[8 * j + r] * x[acolidx[8 * j + r]];
478d4002b98SHong Zhang y[row] = yval;
479d4002b98SHong Zhang }
480d4002b98SHong Zhang break;
481d4002b98SHong Zhang }
482d4002b98SHong Zhang
483d4002b98SHong Zhang /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */
484a48a6482SHong Zhang #pragma novector
485a48a6482SHong Zhang #pragma unroll(2)
4867285fed1SHong Zhang for (j = a->sliidx[i]; j < a->sliidx[i + 1]; j += 8) {
487d4002b98SHong Zhang vec_vals = _mm256_loadu_pd(aval);
488165f9cc3SJed Brown vec_x_tmp = _mm_setzero_pd();
489d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
490d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
491d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x, vec_x_tmp, 0);
492d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
493d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
494d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x, vec_x_tmp, 1);
495d4002b98SHong Zhang vec_y = _mm256_add_pd(_mm256_mul_pd(vec_x, vec_vals), vec_y);
496d4002b98SHong Zhang aval += 4;
497d4002b98SHong Zhang
498d4002b98SHong Zhang vec_vals = _mm256_loadu_pd(aval);
499d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
500d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
501d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x, vec_x_tmp, 0);
502d4002b98SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
503d4002b98SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
504d4002b98SHong Zhang vec_x = _mm256_insertf128_pd(vec_x, vec_x_tmp, 1);
505d4002b98SHong Zhang vec_y2 = _mm256_add_pd(_mm256_mul_pd(vec_x, vec_vals), vec_y2);
506d4002b98SHong Zhang aval += 4;
507d4002b98SHong Zhang }
508d4002b98SHong Zhang
509d4002b98SHong Zhang _mm256_storeu_pd(y + i * 8, vec_y);
510d4002b98SHong Zhang _mm256_storeu_pd(y + i * 8 + 4, vec_y2);
511d4002b98SHong Zhang }
512d4002b98SHong Zhang #else
51307e43b41SHong Zhang PetscCall(PetscMalloc1(sliceheight, &sum));
514d4002b98SHong Zhang for (i = 0; i < totalslices; i++) { /* loop over slices */
51507e43b41SHong Zhang for (j = 0; j < sliceheight; j++) {
5162d1451d4SHong Zhang sum[j] = 0.0;
51707e43b41SHong Zhang for (k = a->sliidx[i] + j; k < a->sliidx[i + 1]; k += sliceheight) sum[j] += aval[k] * x[acolidx[k]];
518d4002b98SHong Zhang }
51907e43b41SHong Zhang if (i == totalslices - 1 && (A->rmap->n % sliceheight)) { /* if last slice has padding rows */
52007e43b41SHong Zhang for (j = 0; j < (A->rmap->n % sliceheight); j++) y[sliceheight * i + j] = sum[j];
521d4002b98SHong Zhang } else {
52207e43b41SHong Zhang for (j = 0; j < sliceheight; j++) y[sliceheight * i + j] = sum[j];
523d4002b98SHong Zhang }
524d4002b98SHong Zhang }
52507e43b41SHong Zhang PetscCall(PetscFree(sum));
526d4002b98SHong Zhang #endif
527d4002b98SHong Zhang
5289566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * a->nz - a->nonzerorowcnt)); /* theoretical minimal FLOPs */
5299566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x));
5309566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(yy, &y));
5313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
532d4002b98SHong Zhang }
533d4002b98SHong Zhang
534d4002b98SHong Zhang #include <../src/mat/impls/aij/seq/ftn-kernels/fmultadd.h>
MatMultAdd_SeqSELL(Mat A,Vec xx,Vec yy,Vec zz)535d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultAdd_SeqSELL(Mat A, Vec xx, Vec yy, Vec zz)
536d71ae5a4SJacob Faibussowitsch {
537d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
538d4002b98SHong Zhang PetscScalar *y, *z;
539d4002b98SHong Zhang const PetscScalar *x;
540d4002b98SHong Zhang const MatScalar *aval = a->val;
541d4002b98SHong Zhang PetscInt totalslices = a->totalslices;
542d4002b98SHong Zhang const PetscInt *acolidx = a->colidx;
543d4002b98SHong Zhang PetscInt i, j;
544d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
5457285fed1SHong Zhang __m512d vec_x, vec_y, vec_vals;
546d4002b98SHong Zhang __m256i vec_idx;
5475ea36cfaSSatish Balay __mmask8 mask = 0;
5487285fed1SHong Zhang __m512d vec_x2, vec_y2, vec_vals2, vec_x3, vec_y3, vec_vals3, vec_x4, vec_y4, vec_vals4;
5497285fed1SHong Zhang __m256i vec_idx2, vec_idx3, vec_idx4;
55021cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
5517285fed1SHong Zhang __m128d vec_x_tmp;
5527285fed1SHong Zhang __m256d vec_x, vec_y, vec_y2, vec_vals;
5537285fed1SHong Zhang MatScalar yval;
5547285fed1SHong Zhang PetscInt r, row, nnz_in_row;
555d4002b98SHong Zhang #else
55607e43b41SHong Zhang PetscInt k, sliceheight = a->sliceheight;
55707e43b41SHong Zhang PetscScalar *sum;
558d4002b98SHong Zhang #endif
559d4002b98SHong Zhang
560d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT)
561d4002b98SHong Zhang #pragma disjoint(*x, *y, *aval)
562d4002b98SHong Zhang #endif
563d4002b98SHong Zhang
564d4002b98SHong Zhang PetscFunctionBegin;
5652d1451d4SHong Zhang if (!a->nz) {
5662d1451d4SHong Zhang PetscCall(VecCopy(yy, zz));
5672d1451d4SHong Zhang PetscFunctionReturn(PETSC_SUCCESS);
5682d1451d4SHong Zhang }
5699566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x));
5709566063dSJacob Faibussowitsch PetscCall(VecGetArrayPair(yy, zz, &y, &z));
571d4002b98SHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX512F__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
57207e43b41SHong Zhang PetscCheck(a->sliceheight == 8, PETSC_COMM_SELF, PETSC_ERR_SUP, "The kernel requires a slice height of 8, but the input matrix has a slice height of %" PetscInt_FMT, a->sliceheight);
5737285fed1SHong Zhang for (i = 0; i < totalslices; i++) { /* loop over slices */
5747285fed1SHong Zhang PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
5757285fed1SHong Zhang PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
5767285fed1SHong Zhang
577d4002b98SHong Zhang if (i == totalslices - 1 && A->rmap->n & 0x07) { /* if last slice has padding rows */
578d4002b98SHong Zhang mask = (__mmask8)(0xff >> (8 - (A->rmap->n & 0x07)));
579ef588d5cSRichard Tran Mills vec_y = _mm512_mask_loadu_pd(vec_y, mask, &y[8 * i]);
5807285fed1SHong Zhang } else {
581ef588d5cSRichard Tran Mills vec_y = _mm512_loadu_pd(&y[8 * i]);
5827285fed1SHong Zhang }
5837285fed1SHong Zhang vec_y2 = _mm512_setzero_pd();
5847285fed1SHong Zhang vec_y3 = _mm512_setzero_pd();
5857285fed1SHong Zhang vec_y4 = _mm512_setzero_pd();
5867285fed1SHong Zhang
587da81f932SPierre Jolivet j = a->sliidx[i] >> 3; /* 8 bytes are read at each time, corresponding to a slice column */
5887285fed1SHong Zhang switch ((a->sliidx[i + 1] - a->sliidx[i]) / 8 & 3) {
5897285fed1SHong Zhang case 3:
5907285fed1SHong Zhang AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
5919371c9d4SSatish Balay acolidx += 8;
5929371c9d4SSatish Balay aval += 8;
5937285fed1SHong Zhang AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2);
5949371c9d4SSatish Balay acolidx += 8;
5959371c9d4SSatish Balay aval += 8;
5967285fed1SHong Zhang AVX512_Mult_Private(vec_idx3, vec_x3, vec_vals3, vec_y3);
5979371c9d4SSatish Balay acolidx += 8;
5989371c9d4SSatish Balay aval += 8;
5997285fed1SHong Zhang j += 3;
6007285fed1SHong Zhang break;
6017285fed1SHong Zhang case 2:
6027285fed1SHong Zhang AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
6039371c9d4SSatish Balay acolidx += 8;
6049371c9d4SSatish Balay aval += 8;
6057285fed1SHong Zhang AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2);
6069371c9d4SSatish Balay acolidx += 8;
6079371c9d4SSatish Balay aval += 8;
6087285fed1SHong Zhang j += 2;
6097285fed1SHong Zhang break;
6107285fed1SHong Zhang case 1:
6117285fed1SHong Zhang AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
6129371c9d4SSatish Balay acolidx += 8;
6139371c9d4SSatish Balay aval += 8;
6147285fed1SHong Zhang j += 1;
6157285fed1SHong Zhang break;
6167285fed1SHong Zhang }
6177285fed1SHong Zhang #pragma novector
6187285fed1SHong Zhang for (; j < (a->sliidx[i + 1] >> 3); j += 4) {
6197285fed1SHong Zhang AVX512_Mult_Private(vec_idx, vec_x, vec_vals, vec_y);
6209371c9d4SSatish Balay acolidx += 8;
6219371c9d4SSatish Balay aval += 8;
6227285fed1SHong Zhang AVX512_Mult_Private(vec_idx2, vec_x2, vec_vals2, vec_y2);
6239371c9d4SSatish Balay acolidx += 8;
6249371c9d4SSatish Balay aval += 8;
6257285fed1SHong Zhang AVX512_Mult_Private(vec_idx3, vec_x3, vec_vals3, vec_y3);
6269371c9d4SSatish Balay acolidx += 8;
6279371c9d4SSatish Balay aval += 8;
6287285fed1SHong Zhang AVX512_Mult_Private(vec_idx4, vec_x4, vec_vals4, vec_y4);
6299371c9d4SSatish Balay acolidx += 8;
6309371c9d4SSatish Balay aval += 8;
6317285fed1SHong Zhang }
6327285fed1SHong Zhang
6337285fed1SHong Zhang vec_y = _mm512_add_pd(vec_y, vec_y2);
6347285fed1SHong Zhang vec_y = _mm512_add_pd(vec_y, vec_y3);
6357285fed1SHong Zhang vec_y = _mm512_add_pd(vec_y, vec_y4);
6367285fed1SHong Zhang if (i == totalslices - 1 && A->rmap->n & 0x07) { /* if last slice has padding rows */
637ef588d5cSRichard Tran Mills _mm512_mask_storeu_pd(&z[8 * i], mask, vec_y);
638d4002b98SHong Zhang } else {
639ef588d5cSRichard Tran Mills _mm512_storeu_pd(&z[8 * i], vec_y);
640d4002b98SHong Zhang }
6417285fed1SHong Zhang }
64221cec45eSHong Zhang #elif defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
64307e43b41SHong Zhang PetscCheck(a->sliceheight == 8, PETSC_COMM_SELF, PETSC_ERR_SUP, "The kernel requires a slice height of 8, but the input matrix has a slice height of %" PetscInt_FMT, a->sliceheight);
6447285fed1SHong Zhang for (i = 0; i < totalslices; i++) { /* loop over full slices */
6457285fed1SHong Zhang PetscPrefetchBlock(acolidx, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
6467285fed1SHong Zhang PetscPrefetchBlock(aval, a->sliidx[i + 1] - a->sliidx[i], 0, PETSC_PREFETCH_HINT_T0);
6477285fed1SHong Zhang
6487285fed1SHong Zhang /* last slice may have padding rows. Don't use vectorization. */
6497285fed1SHong Zhang if (i == totalslices - 1 && (A->rmap->n & 0x07)) {
6507285fed1SHong Zhang for (r = 0; r < (A->rmap->n & 0x07); ++r) {
6517285fed1SHong Zhang row = 8 * i + r;
6527285fed1SHong Zhang yval = (MatScalar)0.0;
6537285fed1SHong Zhang nnz_in_row = a->rlen[row];
6547285fed1SHong Zhang for (j = 0; j < nnz_in_row; ++j) yval += aval[8 * j + r] * x[acolidx[8 * j + r]];
6557285fed1SHong Zhang z[row] = y[row] + yval;
6567285fed1SHong Zhang }
6577285fed1SHong Zhang break;
6587285fed1SHong Zhang }
6597285fed1SHong Zhang
6607285fed1SHong Zhang vec_y = _mm256_loadu_pd(y + 8 * i);
6617285fed1SHong Zhang vec_y2 = _mm256_loadu_pd(y + 8 * i + 4);
6627285fed1SHong Zhang
6637285fed1SHong Zhang /* Process slice of height 8 (512 bits) via two subslices of height 4 (256 bits) via AVX */
6647285fed1SHong Zhang for (j = a->sliidx[i]; j < a->sliidx[i + 1]; j += 8) {
6657285fed1SHong Zhang vec_vals = _mm256_loadu_pd(aval);
666165f9cc3SJed Brown vec_x_tmp = _mm_setzero_pd();
6677285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
6687285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
669165f9cc3SJed Brown vec_x = _mm256_setzero_pd();
6707285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x, vec_x_tmp, 0);
6717285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
6727285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
6737285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x, vec_x_tmp, 1);
6747285fed1SHong Zhang vec_y = _mm256_add_pd(_mm256_mul_pd(vec_x, vec_vals), vec_y);
6757285fed1SHong Zhang aval += 4;
6767285fed1SHong Zhang
6777285fed1SHong Zhang vec_vals = _mm256_loadu_pd(aval);
6787285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
6797285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
6807285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x, vec_x_tmp, 0);
6817285fed1SHong Zhang vec_x_tmp = _mm_loadl_pd(vec_x_tmp, x + *acolidx++);
6827285fed1SHong Zhang vec_x_tmp = _mm_loadh_pd(vec_x_tmp, x + *acolidx++);
6837285fed1SHong Zhang vec_x = _mm256_insertf128_pd(vec_x, vec_x_tmp, 1);
6847285fed1SHong Zhang vec_y2 = _mm256_add_pd(_mm256_mul_pd(vec_x, vec_vals), vec_y2);
6857285fed1SHong Zhang aval += 4;
6867285fed1SHong Zhang }
6877285fed1SHong Zhang
6887285fed1SHong Zhang _mm256_storeu_pd(z + i * 8, vec_y);
6897285fed1SHong Zhang _mm256_storeu_pd(z + i * 8 + 4, vec_y2);
6907285fed1SHong Zhang }
691d4002b98SHong Zhang #else
69207e43b41SHong Zhang PetscCall(PetscMalloc1(sliceheight, &sum));
6937285fed1SHong Zhang for (i = 0; i < totalslices; i++) { /* loop over slices */
69407e43b41SHong Zhang for (j = 0; j < sliceheight; j++) {
6952d1451d4SHong Zhang sum[j] = 0.0;
69607e43b41SHong Zhang for (k = a->sliidx[i] + j; k < a->sliidx[i + 1]; k += sliceheight) sum[j] += aval[k] * x[acolidx[k]];
697d4002b98SHong Zhang }
69807e43b41SHong Zhang if (i == totalslices - 1 && (A->rmap->n % sliceheight)) {
69907e43b41SHong Zhang for (j = 0; j < (A->rmap->n % sliceheight); j++) z[sliceheight * i + j] = y[sliceheight * i + j] + sum[j];
700d4002b98SHong Zhang } else {
70107e43b41SHong Zhang for (j = 0; j < sliceheight; j++) z[sliceheight * i + j] = y[sliceheight * i + j] + sum[j];
7027285fed1SHong Zhang }
703d4002b98SHong Zhang }
70407e43b41SHong Zhang PetscCall(PetscFree(sum));
705d4002b98SHong Zhang #endif
706d4002b98SHong Zhang
7079566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * a->nz));
7089566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x));
7099566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayPair(yy, zz, &y, &z));
7103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
711d4002b98SHong Zhang }
712d4002b98SHong Zhang
MatMultTransposeAdd_SeqSELL(Mat A,Vec xx,Vec zz,Vec yy)713d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTransposeAdd_SeqSELL(Mat A, Vec xx, Vec zz, Vec yy)
714d71ae5a4SJacob Faibussowitsch {
715d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
716d4002b98SHong Zhang PetscScalar *y;
717d4002b98SHong Zhang const PetscScalar *x;
718d4002b98SHong Zhang const MatScalar *aval = a->val;
719d4002b98SHong Zhang const PetscInt *acolidx = a->colidx;
72007e43b41SHong Zhang PetscInt i, j, r, row, nnz_in_row, totalslices = a->totalslices, sliceheight = a->sliceheight;
721d4002b98SHong Zhang
722d4002b98SHong Zhang #if defined(PETSC_HAVE_PRAGMA_DISJOINT)
723d4002b98SHong Zhang #pragma disjoint(*x, *y, *aval)
724d4002b98SHong Zhang #endif
725d4002b98SHong Zhang
726d4002b98SHong Zhang PetscFunctionBegin;
727b94d7dedSBarry Smith if (A->symmetric == PETSC_BOOL3_TRUE) {
7289566063dSJacob Faibussowitsch PetscCall(MatMultAdd_SeqSELL(A, xx, zz, yy));
7293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
7309fc32365SStefano Zampini }
7319566063dSJacob Faibussowitsch if (zz != yy) PetscCall(VecCopy(zz, yy));
7322d1451d4SHong Zhang
7332d1451d4SHong Zhang if (a->nz) {
7349566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xx, &x));
7359566063dSJacob Faibussowitsch PetscCall(VecGetArray(yy, &y));
736d4002b98SHong Zhang for (i = 0; i < a->totalslices; i++) { /* loop over slices */
73707e43b41SHong Zhang if (i == totalslices - 1 && (A->rmap->n % sliceheight)) {
73807e43b41SHong Zhang for (r = 0; r < (A->rmap->n % sliceheight); ++r) {
73907e43b41SHong Zhang row = sliceheight * i + r;
7407285fed1SHong Zhang nnz_in_row = a->rlen[row];
74107e43b41SHong Zhang for (j = 0; j < nnz_in_row; ++j) y[acolidx[sliceheight * j + r]] += aval[sliceheight * j + r] * x[row];
7427285fed1SHong Zhang }
7437285fed1SHong Zhang break;
7447285fed1SHong Zhang }
74507e43b41SHong Zhang for (r = 0; r < sliceheight; ++r)
74607e43b41SHong Zhang for (j = a->sliidx[i] + r; j < a->sliidx[i + 1]; j += sliceheight) y[acolidx[j]] += aval[j] * x[sliceheight * i + r];
747d4002b98SHong Zhang }
7482d1451d4SHong Zhang PetscCall(PetscLogFlops(2.0 * a->nz));
7499566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xx, &x));
7509566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(yy, &y));
7512d1451d4SHong Zhang }
7523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
753d4002b98SHong Zhang }
754d4002b98SHong Zhang
MatMultTranspose_SeqSELL(Mat A,Vec xx,Vec yy)755d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTranspose_SeqSELL(Mat A, Vec xx, Vec yy)
756d71ae5a4SJacob Faibussowitsch {
757d4002b98SHong Zhang PetscFunctionBegin;
758b94d7dedSBarry Smith if (A->symmetric == PETSC_BOOL3_TRUE) {
7599566063dSJacob Faibussowitsch PetscCall(MatMult_SeqSELL(A, xx, yy));
7609fc32365SStefano Zampini } else {
7619566063dSJacob Faibussowitsch PetscCall(VecSet(yy, 0.0));
7629566063dSJacob Faibussowitsch PetscCall(MatMultTransposeAdd_SeqSELL(A, xx, yy, yy));
7639fc32365SStefano Zampini }
7643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
765d4002b98SHong Zhang }
766d4002b98SHong Zhang
MatGetDiagonalMarkers_SeqSELL(Mat A,const PetscInt ** diag,PetscBool * diagDense)7679234b629SBarry Smith static PetscErrorCode MatGetDiagonalMarkers_SeqSELL(Mat A, const PetscInt **diag, PetscBool *diagDense)
768d71ae5a4SJacob Faibussowitsch {
769d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
770d4002b98SHong Zhang
771d4002b98SHong Zhang PetscFunctionBegin;
772421480d9SBarry Smith if (A->factortype != MAT_FACTOR_NONE) {
773421480d9SBarry Smith PetscAssertPointer(diag, 2);
774421480d9SBarry Smith PetscCheck(!diagDense, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot check for dense diagonal with factored matrices");
775421480d9SBarry Smith *diag = a->diag;
7763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
777d4002b98SHong Zhang }
778421480d9SBarry Smith PetscCheck(diag || diagDense, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "At least one of diag or diagDense must be requested");
779421480d9SBarry Smith if (a->diagNonzeroState != A->nonzerostate || (diag && !a->diag)) {
78007425a8dSBarry Smith const PetscInt m = A->rmap->n;
78107425a8dSBarry Smith PetscInt shift;
782d4002b98SHong Zhang
783421480d9SBarry Smith if (!diag && !a->diag) {
78407425a8dSBarry Smith a->diagDense = PETSC_TRUE;
785421480d9SBarry Smith for (PetscInt i = 0; i < m; i++) {
786421480d9SBarry Smith PetscBool found = PETSC_FALSE;
787421480d9SBarry Smith
788421480d9SBarry Smith shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */
789421480d9SBarry Smith for (PetscInt j = 0; j < a->rlen[i]; j++) {
790421480d9SBarry Smith if (a->colidx[shift + a->sliceheight * j] == i) {
791421480d9SBarry Smith a->diag[i] = shift + a->sliceheight * j;
792421480d9SBarry Smith found = PETSC_TRUE;
793421480d9SBarry Smith break;
794421480d9SBarry Smith }
795421480d9SBarry Smith }
796421480d9SBarry Smith if (!found) {
797421480d9SBarry Smith a->diagDense = PETSC_FALSE;
798421480d9SBarry Smith *diagDense = a->diagDense;
799421480d9SBarry Smith a->diagNonzeroState = A->nonzerostate;
800421480d9SBarry Smith PetscFunctionReturn(PETSC_SUCCESS);
801421480d9SBarry Smith }
802421480d9SBarry Smith }
803421480d9SBarry Smith } else {
804421480d9SBarry Smith if (!a->diag) PetscCall(PetscMalloc1(m, &a->diag));
805421480d9SBarry Smith a->diagDense = PETSC_TRUE;
806421480d9SBarry Smith for (PetscInt i = 0; i < m; i++) {
80707425a8dSBarry Smith PetscBool found = PETSC_FALSE;
80807425a8dSBarry Smith
80907e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */
810d4002b98SHong Zhang a->diag[i] = -1;
81107425a8dSBarry Smith for (PetscInt j = 0; j < a->rlen[i]; j++) {
81207e43b41SHong Zhang if (a->colidx[shift + a->sliceheight * j] == i) {
81307e43b41SHong Zhang a->diag[i] = shift + a->sliceheight * j;
81407425a8dSBarry Smith found = PETSC_TRUE;
815d4002b98SHong Zhang break;
816d4002b98SHong Zhang }
817d4002b98SHong Zhang }
81807425a8dSBarry Smith if (!found) a->diagDense = PETSC_FALSE;
819d4002b98SHong Zhang }
820421480d9SBarry Smith }
82107425a8dSBarry Smith a->diagNonzeroState = A->nonzerostate;
822421480d9SBarry Smith }
823421480d9SBarry Smith if (diag) *diag = a->diag;
824421480d9SBarry Smith if (diagDense) *diagDense = a->diagDense;
8253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
826d4002b98SHong Zhang }
827d4002b98SHong Zhang
828d4002b98SHong Zhang /*
829d4002b98SHong Zhang Negative shift indicates do not generate an error if there is a zero diagonal, just invert it anyways
830d4002b98SHong Zhang */
MatInvertDiagonalForSOR_SeqSELL(Mat A,PetscScalar omega,PetscScalar fshift)83107425a8dSBarry Smith static PetscErrorCode MatInvertDiagonalForSOR_SeqSELL(Mat A, PetscScalar omega, PetscScalar fshift)
832d71ae5a4SJacob Faibussowitsch {
833d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
834421480d9SBarry Smith PetscInt i, m = A->rmap->n;
835d4002b98SHong Zhang MatScalar *val = a->val;
836d4002b98SHong Zhang PetscScalar *idiag, *mdiag;
837421480d9SBarry Smith const PetscInt *diag;
838421480d9SBarry Smith PetscBool diagDense;
839d4002b98SHong Zhang
840d4002b98SHong Zhang PetscFunctionBegin;
84107425a8dSBarry Smith if (a->idiagState == ((PetscObject)A)->state && a->omega == omega && a->fshift == fshift) PetscFunctionReturn(PETSC_SUCCESS);
842421480d9SBarry Smith PetscCall(MatGetDiagonalMarkers_SeqSELL(A, &diag, &diagDense));
843421480d9SBarry Smith PetscCheck(diagDense, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix must have all diagonal locations to invert them");
844421480d9SBarry Smith
845d4002b98SHong Zhang if (!a->idiag) {
8469566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(m, &a->idiag, m, &a->mdiag, m, &a->ssor_work));
847d4002b98SHong Zhang val = a->val;
848d4002b98SHong Zhang }
849d4002b98SHong Zhang mdiag = a->mdiag;
850d4002b98SHong Zhang idiag = a->idiag;
851d4002b98SHong Zhang
852d4002b98SHong Zhang if (omega == 1.0 && PetscRealPart(fshift) <= 0.0) {
853d4002b98SHong Zhang for (i = 0; i < m; i++) {
854d4002b98SHong Zhang mdiag[i] = val[diag[i]];
855d4002b98SHong Zhang if (!PetscAbsScalar(mdiag[i])) { /* zero diagonal */
8560fdf79fbSJacob Faibussowitsch PetscCheck(PetscRealPart(fshift), PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Zero diagonal on row %" PetscInt_FMT, i);
8579566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Zero diagonal on row %" PetscInt_FMT "\n", i));
858d4002b98SHong Zhang A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
859d4002b98SHong Zhang A->factorerror_zeropivot_value = 0.0;
860d4002b98SHong Zhang A->factorerror_zeropivot_row = i;
861d4002b98SHong Zhang }
862d4002b98SHong Zhang idiag[i] = 1.0 / val[diag[i]];
863d4002b98SHong Zhang }
8649566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(m));
865d4002b98SHong Zhang } else {
866d4002b98SHong Zhang for (i = 0; i < m; i++) {
867d4002b98SHong Zhang mdiag[i] = val[diag[i]];
868d4002b98SHong Zhang idiag[i] = omega / (fshift + val[diag[i]]);
869d4002b98SHong Zhang }
8709566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * m));
871d4002b98SHong Zhang }
87207425a8dSBarry Smith a->idiagState = ((PetscObject)A)->state;
87307425a8dSBarry Smith a->omega = omega;
87407425a8dSBarry Smith a->fshift = fshift;
8753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
876d4002b98SHong Zhang }
877d4002b98SHong Zhang
MatZeroEntries_SeqSELL(Mat A)878d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroEntries_SeqSELL(Mat A)
879d71ae5a4SJacob Faibussowitsch {
880d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
881d4002b98SHong Zhang
882d4002b98SHong Zhang PetscFunctionBegin;
8839566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(a->val, a->sliidx[a->totalslices]));
8843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
885d4002b98SHong Zhang }
886d4002b98SHong Zhang
MatDestroy_SeqSELL(Mat A)887d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_SeqSELL(Mat A)
888d71ae5a4SJacob Faibussowitsch {
889d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
890d4002b98SHong Zhang
891d4002b98SHong Zhang PetscFunctionBegin;
8923ba16761SJacob Faibussowitsch PetscCall(PetscLogObjectState((PetscObject)A, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT ", NZ=%" PetscInt_FMT, A->rmap->n, A->cmap->n, a->nz));
8939566063dSJacob Faibussowitsch PetscCall(MatSeqXSELLFreeSELL(A, &a->val, &a->colidx));
8949566063dSJacob Faibussowitsch PetscCall(ISDestroy(&a->row));
8959566063dSJacob Faibussowitsch PetscCall(ISDestroy(&a->col));
8969566063dSJacob Faibussowitsch PetscCall(PetscFree(a->diag));
8979566063dSJacob Faibussowitsch PetscCall(PetscFree(a->rlen));
8989566063dSJacob Faibussowitsch PetscCall(PetscFree(a->sliidx));
8999566063dSJacob Faibussowitsch PetscCall(PetscFree3(a->idiag, a->mdiag, a->ssor_work));
9009566063dSJacob Faibussowitsch PetscCall(PetscFree(a->solve_work));
9019566063dSJacob Faibussowitsch PetscCall(ISDestroy(&a->icol));
9029566063dSJacob Faibussowitsch PetscCall(PetscFree(a->saved_values));
9039566063dSJacob Faibussowitsch PetscCall(PetscFree2(a->getrowcols, a->getrowvals));
9049566063dSJacob Faibussowitsch PetscCall(PetscFree(A->data));
905773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
90690d2215bSHong Zhang PetscCall(PetscFree(a->chunk_slice_map));
90790d2215bSHong Zhang #endif
908d4002b98SHong Zhang
9099566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)A, NULL));
9109566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatStoreValues_C", NULL));
9119566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatRetrieveValues_C", NULL));
9129566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLSetPreallocation_C", NULL));
9132e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLGetArray_C", NULL));
9142e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLRestoreArray_C", NULL));
915b5917f1bSHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatConvert_seqsell_seqaij_C", NULL));
9162d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA)
917b5917f1bSHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatConvert_seqsell_seqsellcuda_C", NULL));
9182d1451d4SHong Zhang #endif
919773bf0f6SHong Zhang #if defined(PETSC_HAVE_HIP)
920773bf0f6SHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatConvert_seqsell_seqsellhip_C", NULL));
921773bf0f6SHong Zhang #endif
92207e43b41SHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLGetFillRatio_C", NULL));
92307e43b41SHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLGetMaxSliceWidth_C", NULL));
92407e43b41SHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLGetAvgSliceWidth_C", NULL));
925b921024eSHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLGetVarSliceSize_C", NULL));
92607e43b41SHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSeqSELLSetSliceHeight_C", NULL));
9273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
928d4002b98SHong Zhang }
929d4002b98SHong Zhang
MatSetOption_SeqSELL(Mat A,MatOption op,PetscBool flg)930d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_SeqSELL(Mat A, MatOption op, PetscBool flg)
931d71ae5a4SJacob Faibussowitsch {
932d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
933d4002b98SHong Zhang
934d4002b98SHong Zhang PetscFunctionBegin;
935d4002b98SHong Zhang switch (op) {
936d71ae5a4SJacob Faibussowitsch case MAT_ROW_ORIENTED:
937d71ae5a4SJacob Faibussowitsch a->roworiented = flg;
938d71ae5a4SJacob Faibussowitsch break;
939d71ae5a4SJacob Faibussowitsch case MAT_KEEP_NONZERO_PATTERN:
940d71ae5a4SJacob Faibussowitsch a->keepnonzeropattern = flg;
941d71ae5a4SJacob Faibussowitsch break;
942d71ae5a4SJacob Faibussowitsch case MAT_NEW_NONZERO_LOCATIONS:
943d71ae5a4SJacob Faibussowitsch a->nonew = (flg ? 0 : 1);
944d71ae5a4SJacob Faibussowitsch break;
945d71ae5a4SJacob Faibussowitsch case MAT_NEW_NONZERO_LOCATION_ERR:
946d71ae5a4SJacob Faibussowitsch a->nonew = (flg ? -1 : 0);
947d71ae5a4SJacob Faibussowitsch break;
948d71ae5a4SJacob Faibussowitsch case MAT_NEW_NONZERO_ALLOCATION_ERR:
949d71ae5a4SJacob Faibussowitsch a->nonew = (flg ? -2 : 0);
950d71ae5a4SJacob Faibussowitsch break;
951d71ae5a4SJacob Faibussowitsch case MAT_UNUSED_NONZERO_LOCATION_ERR:
952d71ae5a4SJacob Faibussowitsch a->nounused = (flg ? -1 : 0);
953d71ae5a4SJacob Faibussowitsch break;
954d71ae5a4SJacob Faibussowitsch default:
955888c827cSStefano Zampini break;
956d4002b98SHong Zhang }
9573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
958d4002b98SHong Zhang }
959d4002b98SHong Zhang
MatGetDiagonal_SeqSELL(Mat A,Vec v)960d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDiagonal_SeqSELL(Mat A, Vec v)
961d71ae5a4SJacob Faibussowitsch {
962d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
963d4002b98SHong Zhang PetscInt i, j, n, shift;
964d4002b98SHong Zhang PetscScalar *x, zero = 0.0;
965d4002b98SHong Zhang
966d4002b98SHong Zhang PetscFunctionBegin;
9679566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(v, &n));
96808401ef6SPierre Jolivet PetscCheck(n == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Nonconforming matrix and vector");
969d4002b98SHong Zhang
970d4002b98SHong Zhang if (A->factortype == MAT_FACTOR_ILU || A->factortype == MAT_FACTOR_LU) {
971421480d9SBarry Smith const PetscInt *diag;
972421480d9SBarry Smith
973421480d9SBarry Smith PetscCall(MatGetDiagonalMarkers_SeqSELL(A, &diag, NULL));
974421480d9SBarry Smith PetscCall(VecGetArrayWrite(v, &x));
975d4002b98SHong Zhang for (i = 0; i < n; i++) x[i] = 1.0 / a->val[diag[i]];
976421480d9SBarry Smith PetscCall(VecRestoreArrayWrite(v, &x));
9773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
978d4002b98SHong Zhang }
979d4002b98SHong Zhang
9809566063dSJacob Faibussowitsch PetscCall(VecSet(v, zero));
9819566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &x));
982d4002b98SHong Zhang for (i = 0; i < n; i++) { /* loop over rows */
98307e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */
984d4002b98SHong Zhang x[i] = 0;
985d4002b98SHong Zhang for (j = 0; j < a->rlen[i]; j++) {
98607e43b41SHong Zhang if (a->colidx[shift + a->sliceheight * j] == i) {
98707e43b41SHong Zhang x[i] = a->val[shift + a->sliceheight * j];
988d4002b98SHong Zhang break;
989d4002b98SHong Zhang }
990d4002b98SHong Zhang }
991d4002b98SHong Zhang }
9929566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &x));
9933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
994d4002b98SHong Zhang }
995d4002b98SHong Zhang
MatDiagonalScale_SeqSELL(Mat A,Vec ll,Vec rr)996d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDiagonalScale_SeqSELL(Mat A, Vec ll, Vec rr)
997d71ae5a4SJacob Faibussowitsch {
998d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
999d4002b98SHong Zhang const PetscScalar *l, *r;
1000d4002b98SHong Zhang PetscInt i, j, m, n, row;
1001d4002b98SHong Zhang
1002d4002b98SHong Zhang PetscFunctionBegin;
1003d4002b98SHong Zhang if (ll) {
1004d4002b98SHong Zhang /* The local size is used so that VecMPI can be passed to this routine
1005d4002b98SHong Zhang by MatDiagonalScale_MPISELL */
10069566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &m));
100708401ef6SPierre Jolivet PetscCheck(m == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left scaling vector wrong length");
10089566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ll, &l));
1009d4002b98SHong Zhang for (i = 0; i < a->totalslices; i++) { /* loop over slices */
101007e43b41SHong Zhang if (i == a->totalslices - 1 && (A->rmap->n % a->sliceheight)) { /* if last slice has padding rows */
101107e43b41SHong Zhang for (j = a->sliidx[i], row = 0; j < a->sliidx[i + 1]; j++, row = (row + 1) % a->sliceheight) {
101207e43b41SHong Zhang if (row < (A->rmap->n % a->sliceheight)) a->val[j] *= l[a->sliceheight * i + row];
1013dab86139SHong Zhang }
1014dab86139SHong Zhang } else {
1015ac530a7eSPierre Jolivet for (j = a->sliidx[i], row = 0; j < a->sliidx[i + 1]; j++, row = (row + 1) % a->sliceheight) a->val[j] *= l[a->sliceheight * i + row];
1016d4002b98SHong Zhang }
1017dab86139SHong Zhang }
10189566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ll, &l));
10199566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(a->nz));
1020d4002b98SHong Zhang }
1021d4002b98SHong Zhang if (rr) {
10229566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &n));
102308401ef6SPierre Jolivet PetscCheck(n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Right scaling vector wrong length");
10249566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(rr, &r));
1025d4002b98SHong Zhang for (i = 0; i < a->totalslices; i++) { /* loop over slices */
102607e43b41SHong Zhang if (i == a->totalslices - 1 && (A->rmap->n % a->sliceheight)) { /* if last slice has padding rows */
102707e43b41SHong Zhang for (j = a->sliidx[i], row = 0; j < a->sliidx[i + 1]; j++, row = ((row + 1) % a->sliceheight)) {
102807e43b41SHong Zhang if (row < (A->rmap->n % a->sliceheight)) a->val[j] *= r[a->colidx[j]];
1029dab86139SHong Zhang }
1030dab86139SHong Zhang } else {
1031ad540459SPierre Jolivet for (j = a->sliidx[i]; j < a->sliidx[i + 1]; j++) a->val[j] *= r[a->colidx[j]];
1032d4002b98SHong Zhang }
1033dab86139SHong Zhang }
10349566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(rr, &r));
10359566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(a->nz));
1036d4002b98SHong Zhang }
1037773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
10382d1451d4SHong Zhang if (A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) A->offloadmask = PETSC_OFFLOAD_CPU;
10392d1451d4SHong Zhang #endif
10403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1041d4002b98SHong Zhang }
1042d4002b98SHong Zhang
MatGetValues_SeqSELL(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[])1043d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetValues_SeqSELL(Mat A, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], PetscScalar v[])
1044d71ae5a4SJacob Faibussowitsch {
1045d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
1046d4002b98SHong Zhang PetscInt *cp, i, k, low, high, t, row, col, l;
1047d4002b98SHong Zhang PetscInt shift;
1048d4002b98SHong Zhang MatScalar *vp;
1049d4002b98SHong Zhang
1050d4002b98SHong Zhang PetscFunctionBegin;
105168aafef3SStefano Zampini for (k = 0; k < m; k++) { /* loop over requested rows */
1052d4002b98SHong Zhang row = im[k];
1053d4002b98SHong Zhang if (row < 0) continue;
10546bdcaf15SBarry Smith PetscCheck(row < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, row, A->rmap->n - 1);
105507e43b41SHong Zhang shift = a->sliidx[row / a->sliceheight] + (row % a->sliceheight); /* starting index of the row */
1056d4002b98SHong Zhang cp = a->colidx + shift; /* pointer to the row */
1057d4002b98SHong Zhang vp = a->val + shift; /* pointer to the row */
105868aafef3SStefano Zampini for (l = 0; l < n; l++) { /* loop over requested columns */
1059d4002b98SHong Zhang col = in[l];
1060d4002b98SHong Zhang if (col < 0) continue;
10616bdcaf15SBarry Smith PetscCheck(col < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: row %" PetscInt_FMT " max %" PetscInt_FMT, col, A->cmap->n - 1);
10629371c9d4SSatish Balay high = a->rlen[row];
10639371c9d4SSatish Balay low = 0; /* assume unsorted */
1064d4002b98SHong Zhang while (high - low > 5) {
1065d4002b98SHong Zhang t = (low + high) / 2;
106607e43b41SHong Zhang if (*(cp + a->sliceheight * t) > col) high = t;
1067d4002b98SHong Zhang else low = t;
1068d4002b98SHong Zhang }
1069d4002b98SHong Zhang for (i = low; i < high; i++) {
107007e43b41SHong Zhang if (*(cp + a->sliceheight * i) > col) break;
107107e43b41SHong Zhang if (*(cp + a->sliceheight * i) == col) {
107207e43b41SHong Zhang *v++ = *(vp + a->sliceheight * i);
1073d4002b98SHong Zhang goto finished;
1074d4002b98SHong Zhang }
1075d4002b98SHong Zhang }
1076d4002b98SHong Zhang *v++ = 0.0;
1077d4002b98SHong Zhang finished:;
1078d4002b98SHong Zhang }
1079d4002b98SHong Zhang }
10803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1081d4002b98SHong Zhang }
1082d4002b98SHong Zhang
MatView_SeqSELL_ASCII(Mat A,PetscViewer viewer)1083ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_SeqSELL_ASCII(Mat A, PetscViewer viewer)
1084d71ae5a4SJacob Faibussowitsch {
1085d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
1086d4002b98SHong Zhang PetscInt i, j, m = A->rmap->n, shift;
1087d4002b98SHong Zhang const char *name;
1088d4002b98SHong Zhang PetscViewerFormat format;
1089d4002b98SHong Zhang
1090d4002b98SHong Zhang PetscFunctionBegin;
10919566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format));
1092d4002b98SHong Zhang if (format == PETSC_VIEWER_ASCII_MATLAB) {
1093d4002b98SHong Zhang PetscInt nofinalvalue = 0;
1094d4002b98SHong Zhang /*
10953a7d0413SPierre Jolivet if (m && ((a->i[m] == a->i[m-1]) || (a->j[a->nz-1] != A->cmap->n-1))) nofinalvalue = 1;
1096d4002b98SHong Zhang */
10979566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE));
10989566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%% Size = %" PetscInt_FMT " %" PetscInt_FMT " \n", m, A->cmap->n));
10999566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%% Nonzeros = %" PetscInt_FMT " \n", a->nz));
1100d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
11019566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "zzz = zeros(%" PetscInt_FMT ",4);\n", a->nz + nofinalvalue));
1102d4002b98SHong Zhang #else
11039566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "zzz = zeros(%" PetscInt_FMT ",3);\n", a->nz + nofinalvalue));
1104d4002b98SHong Zhang #endif
11059566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "zzz = [\n"));
1106d4002b98SHong Zhang
1107d4002b98SHong Zhang for (i = 0; i < m; i++) {
110807e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
1109d4002b98SHong Zhang for (j = 0; j < a->rlen[i]; j++) {
1110d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
111107e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT " %18.16e %18.16e\n", i + 1, a->colidx[shift + a->sliceheight * j] + 1, (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)PetscImaginaryPart(a->val[shift + a->sliceheight * j])));
1112d4002b98SHong Zhang #else
111307e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT " %18.16e\n", i + 1, a->colidx[shift + a->sliceheight * j] + 1, (double)a->val[shift + a->sliceheight * j]));
1114d4002b98SHong Zhang #endif
1115d4002b98SHong Zhang }
1116d4002b98SHong Zhang }
1117d4002b98SHong Zhang /*
1118d4002b98SHong Zhang if (nofinalvalue) {
1119d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
11209566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT " %18.16e %18.16e\n",m,A->cmap->n,0.,0.));
1121d4002b98SHong Zhang #else
11229566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"%" PetscInt_FMT " %" PetscInt_FMT " %18.16e\n",m,A->cmap->n,0.0));
1123d4002b98SHong Zhang #endif
1124d4002b98SHong Zhang }
1125d4002b98SHong Zhang */
11269566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)A, &name));
11279566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "];\n %s = spconvert(zzz);\n", name));
11289566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE));
1129d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO || format == PETSC_VIEWER_ASCII_INFO) {
11303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1131d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_COMMON) {
11329566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE));
1133d4002b98SHong Zhang for (i = 0; i < m; i++) {
11349566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "row %" PetscInt_FMT ":", i));
113507e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
1136d4002b98SHong Zhang for (j = 0; j < a->rlen[i]; j++) {
1137d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
113807e43b41SHong Zhang if (PetscImaginaryPart(a->val[shift + a->sliceheight * j]) > 0.0 && PetscRealPart(a->val[shift + a->sliceheight * j]) != 0.0) {
113907e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)PetscImaginaryPart(a->val[shift + a->sliceheight * j])));
114007e43b41SHong Zhang } else if (PetscImaginaryPart(a->val[shift + a->sliceheight * j]) < 0.0 && PetscRealPart(a->val[shift + a->sliceheight * j]) != 0.0) {
114107e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)-PetscImaginaryPart(a->val[shift + a->sliceheight * j])));
114207e43b41SHong Zhang } else if (PetscRealPart(a->val[shift + a->sliceheight * j]) != 0.0) {
114307e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j])));
1144d4002b98SHong Zhang }
1145d4002b98SHong Zhang #else
114607e43b41SHong Zhang if (a->val[shift + a->sliceheight * j] != 0.0) PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[shift + a->sliceheight * j], (double)a->val[shift + a->sliceheight * j]));
1147d4002b98SHong Zhang #endif
1148d4002b98SHong Zhang }
11499566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\n"));
1150d4002b98SHong Zhang }
11519566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE));
1152d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_DENSE) {
1153d4002b98SHong Zhang PetscInt cnt = 0, jcnt;
1154d4002b98SHong Zhang PetscScalar value;
1155d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1156d4002b98SHong Zhang PetscBool realonly = PETSC_TRUE;
1157d4002b98SHong Zhang for (i = 0; i < a->sliidx[a->totalslices]; i++) {
1158d4002b98SHong Zhang if (PetscImaginaryPart(a->val[i]) != 0.0) {
1159d4002b98SHong Zhang realonly = PETSC_FALSE;
1160d4002b98SHong Zhang break;
1161d4002b98SHong Zhang }
1162d4002b98SHong Zhang }
1163d4002b98SHong Zhang #endif
1164d4002b98SHong Zhang
11659566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE));
1166d4002b98SHong Zhang for (i = 0; i < m; i++) {
1167d4002b98SHong Zhang jcnt = 0;
116807e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
1169d4002b98SHong Zhang for (j = 0; j < A->cmap->n; j++) {
117007e43b41SHong Zhang if (jcnt < a->rlen[i] && j == a->colidx[shift + a->sliceheight * j]) {
1171d4002b98SHong Zhang value = a->val[cnt++];
1172d4002b98SHong Zhang jcnt++;
1173d4002b98SHong Zhang } else {
1174d4002b98SHong Zhang value = 0.0;
1175d4002b98SHong Zhang }
1176d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1177d4002b98SHong Zhang if (realonly) {
11789566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " %7.5e ", (double)PetscRealPart(value)));
1179d4002b98SHong Zhang } else {
11809566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " %7.5e+%7.5e i ", (double)PetscRealPart(value), (double)PetscImaginaryPart(value)));
1181d4002b98SHong Zhang }
1182d4002b98SHong Zhang #else
11839566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " %7.5e ", (double)value));
1184d4002b98SHong Zhang #endif
1185d4002b98SHong Zhang }
11869566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\n"));
1187d4002b98SHong Zhang }
11889566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE));
1189d4002b98SHong Zhang } else if (format == PETSC_VIEWER_ASCII_MATRIXMARKET) {
1190d4002b98SHong Zhang PetscInt fshift = 1;
11919566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE));
1192d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
11939566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%%%%MatrixMarket matrix coordinate complex general\n"));
1194d4002b98SHong Zhang #else
11959566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%%%%MatrixMarket matrix coordinate real general\n"));
1196d4002b98SHong Zhang #endif
11979566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT "\n", m, A->cmap->n, a->nz));
1198d4002b98SHong Zhang for (i = 0; i < m; i++) {
119907e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
1200d4002b98SHong Zhang for (j = 0; j < a->rlen[i]; j++) {
1201d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
120207e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT " %g %g\n", i + fshift, a->colidx[shift + a->sliceheight * j] + fshift, (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)PetscImaginaryPart(a->val[shift + a->sliceheight * j])));
1203d4002b98SHong Zhang #else
120407e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT " %g\n", i + fshift, a->colidx[shift + a->sliceheight * j] + fshift, (double)a->val[shift + a->sliceheight * j]));
1205d4002b98SHong Zhang #endif
1206d4002b98SHong Zhang }
1207d4002b98SHong Zhang }
12089566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE));
120968aafef3SStefano Zampini } else if (format == PETSC_VIEWER_NATIVE) {
121068aafef3SStefano Zampini for (i = 0; i < a->totalslices; i++) { /* loop over slices */
121168aafef3SStefano Zampini PetscInt row;
12129566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "slice %" PetscInt_FMT ": %" PetscInt_FMT " %" PetscInt_FMT "\n", i, a->sliidx[i], a->sliidx[i + 1]));
121307e43b41SHong Zhang for (j = a->sliidx[i], row = 0; j < a->sliidx[i + 1]; j++, row = (row + 1) % a->sliceheight) {
121468aafef3SStefano Zampini #if defined(PETSC_USE_COMPLEX)
121568aafef3SStefano Zampini if (PetscImaginaryPart(a->val[j]) > 0.0) {
121607e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, " %" PetscInt_FMT " %" PetscInt_FMT " %g + %g i\n", a->sliceheight * i + row, a->colidx[j], (double)PetscRealPart(a->val[j]), (double)PetscImaginaryPart(a->val[j])));
121768aafef3SStefano Zampini } else if (PetscImaginaryPart(a->val[j]) < 0.0) {
121807e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, " %" PetscInt_FMT " %" PetscInt_FMT " %g - %g i\n", a->sliceheight * i + row, a->colidx[j], (double)PetscRealPart(a->val[j]), -(double)PetscImaginaryPart(a->val[j])));
121968aafef3SStefano Zampini } else {
122007e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, " %" PetscInt_FMT " %" PetscInt_FMT " %g\n", a->sliceheight * i + row, a->colidx[j], (double)PetscRealPart(a->val[j])));
122168aafef3SStefano Zampini }
122268aafef3SStefano Zampini #else
122307e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, " %" PetscInt_FMT " %" PetscInt_FMT " %g\n", a->sliceheight * i + row, a->colidx[j], (double)a->val[j]));
122468aafef3SStefano Zampini #endif
122568aafef3SStefano Zampini }
122668aafef3SStefano Zampini }
1227d4002b98SHong Zhang } else {
12289566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE));
1229d4002b98SHong Zhang if (A->factortype) {
1230d4002b98SHong Zhang for (i = 0; i < m; i++) {
123107e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
12329566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "row %" PetscInt_FMT ":", i));
1233d4002b98SHong Zhang /* L part */
123407e43b41SHong Zhang for (j = shift; j < a->diag[i]; j += a->sliceheight) {
1235d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
123607e43b41SHong Zhang if (PetscImaginaryPart(a->val[shift + a->sliceheight * j]) > 0.0) {
12379566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[j], (double)PetscRealPart(a->val[j]), (double)PetscImaginaryPart(a->val[j])));
123807e43b41SHong Zhang } else if (PetscImaginaryPart(a->val[shift + a->sliceheight * j]) < 0.0) {
12399566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[j], (double)PetscRealPart(a->val[j]), (double)(-PetscImaginaryPart(a->val[j]))));
1240d4002b98SHong Zhang } else {
12419566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)PetscRealPart(a->val[j])));
1242d4002b98SHong Zhang }
1243d4002b98SHong Zhang #else
12449566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)a->val[j]));
1245d4002b98SHong Zhang #endif
1246d4002b98SHong Zhang }
1247d4002b98SHong Zhang /* diagonal */
1248d4002b98SHong Zhang j = a->diag[i];
1249d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1250d4002b98SHong Zhang if (PetscImaginaryPart(a->val[j]) > 0.0) {
12519566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[j], (double)PetscRealPart(1.0 / a->val[j]), (double)PetscImaginaryPart(1.0 / a->val[j])));
1252d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[j]) < 0.0) {
12539566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[j], (double)PetscRealPart(1.0 / a->val[j]), (double)(-PetscImaginaryPart(1.0 / a->val[j]))));
1254d4002b98SHong Zhang } else {
12559566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)PetscRealPart(1.0 / a->val[j])));
1256d4002b98SHong Zhang }
1257d4002b98SHong Zhang #else
1258835f2295SStefano Zampini PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)(1 / a->val[j])));
1259d4002b98SHong Zhang #endif
1260d4002b98SHong Zhang
1261d4002b98SHong Zhang /* U part */
126207e43b41SHong Zhang for (j = a->diag[i] + 1; j < shift + a->sliceheight * a->rlen[i]; j += a->sliceheight) {
1263d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1264d4002b98SHong Zhang if (PetscImaginaryPart(a->val[j]) > 0.0) {
12659566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[j], (double)PetscRealPart(a->val[j]), (double)PetscImaginaryPart(a->val[j])));
1266d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[j]) < 0.0) {
12679566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[j], (double)PetscRealPart(a->val[j]), (double)(-PetscImaginaryPart(a->val[j]))));
1268d4002b98SHong Zhang } else {
12699566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)PetscRealPart(a->val[j])));
1270d4002b98SHong Zhang }
1271d4002b98SHong Zhang #else
12729566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[j], (double)a->val[j]));
1273d4002b98SHong Zhang #endif
1274d4002b98SHong Zhang }
12759566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\n"));
1276d4002b98SHong Zhang }
1277d4002b98SHong Zhang } else {
1278d4002b98SHong Zhang for (i = 0; i < m; i++) {
127907e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
12809566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "row %" PetscInt_FMT ":", i));
1281d4002b98SHong Zhang for (j = 0; j < a->rlen[i]; j++) {
1282d4002b98SHong Zhang #if defined(PETSC_USE_COMPLEX)
1283d4002b98SHong Zhang if (PetscImaginaryPart(a->val[j]) > 0.0) {
128407e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g + %g i)", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)PetscImaginaryPart(a->val[shift + a->sliceheight * j])));
1285d4002b98SHong Zhang } else if (PetscImaginaryPart(a->val[j]) < 0.0) {
128607e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g - %g i)", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j]), (double)-PetscImaginaryPart(a->val[shift + a->sliceheight * j])));
1287d4002b98SHong Zhang } else {
128807e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[shift + a->sliceheight * j], (double)PetscRealPart(a->val[shift + a->sliceheight * j])));
1289d4002b98SHong Zhang }
1290d4002b98SHong Zhang #else
129107e43b41SHong Zhang PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ", %g) ", a->colidx[shift + a->sliceheight * j], (double)a->val[shift + a->sliceheight * j]));
1292d4002b98SHong Zhang #endif
1293d4002b98SHong Zhang }
12949566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\n"));
1295d4002b98SHong Zhang }
1296d4002b98SHong Zhang }
12979566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE));
1298d4002b98SHong Zhang }
12999566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer));
13003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1301d4002b98SHong Zhang }
1302d4002b98SHong Zhang
1303d4002b98SHong Zhang #include <petscdraw.h>
MatView_SeqSELL_Draw_Zoom(PetscDraw draw,void * Aa)1304ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_SeqSELL_Draw_Zoom(PetscDraw draw, void *Aa)
1305d71ae5a4SJacob Faibussowitsch {
1306d4002b98SHong Zhang Mat A = (Mat)Aa;
1307d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
1308d4002b98SHong Zhang PetscInt i, j, m = A->rmap->n, shift;
1309d4002b98SHong Zhang int color;
1310d4002b98SHong Zhang PetscReal xl, yl, xr, yr, x_l, x_r, y_l, y_r;
1311d4002b98SHong Zhang PetscViewer viewer;
1312d4002b98SHong Zhang PetscViewerFormat format;
1313d4002b98SHong Zhang
1314d4002b98SHong Zhang PetscFunctionBegin;
13159566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A, "Zoomviewer", (PetscObject *)&viewer));
13169566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format));
13179566063dSJacob Faibussowitsch PetscCall(PetscDrawGetCoordinates(draw, &xl, &yl, &xr, &yr));
1318d4002b98SHong Zhang
1319d4002b98SHong Zhang /* loop over matrix elements drawing boxes */
1320d4002b98SHong Zhang
1321d4002b98SHong Zhang if (format != PETSC_VIEWER_DRAW_CONTOUR) {
1322d0609cedSBarry Smith PetscDrawCollectiveBegin(draw);
1323d4002b98SHong Zhang /* Blue for negative, Cyan for zero and Red for positive */
1324d4002b98SHong Zhang color = PETSC_DRAW_BLUE;
1325d4002b98SHong Zhang for (i = 0; i < m; i++) {
132607e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */
13279371c9d4SSatish Balay y_l = m - i - 1.0;
13289371c9d4SSatish Balay y_r = y_l + 1.0;
1329d4002b98SHong Zhang for (j = 0; j < a->rlen[i]; j++) {
133007e43b41SHong Zhang x_l = a->colidx[shift + a->sliceheight * j];
13319371c9d4SSatish Balay x_r = x_l + 1.0;
133207e43b41SHong Zhang if (PetscRealPart(a->val[shift + a->sliceheight * j]) >= 0.) continue;
13339566063dSJacob Faibussowitsch PetscCall(PetscDrawRectangle(draw, x_l, y_l, x_r, y_r, color, color, color, color));
1334d4002b98SHong Zhang }
1335d4002b98SHong Zhang }
1336d4002b98SHong Zhang color = PETSC_DRAW_CYAN;
1337d4002b98SHong Zhang for (i = 0; i < m; i++) {
133807e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
13399371c9d4SSatish Balay y_l = m - i - 1.0;
13409371c9d4SSatish Balay y_r = y_l + 1.0;
1341d4002b98SHong Zhang for (j = 0; j < a->rlen[i]; j++) {
134207e43b41SHong Zhang x_l = a->colidx[shift + a->sliceheight * j];
13439371c9d4SSatish Balay x_r = x_l + 1.0;
134407e43b41SHong Zhang if (a->val[shift + a->sliceheight * j] != 0.) continue;
13459566063dSJacob Faibussowitsch PetscCall(PetscDrawRectangle(draw, x_l, y_l, x_r, y_r, color, color, color, color));
1346d4002b98SHong Zhang }
1347d4002b98SHong Zhang }
1348d4002b98SHong Zhang color = PETSC_DRAW_RED;
1349d4002b98SHong Zhang for (i = 0; i < m; i++) {
135007e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
13519371c9d4SSatish Balay y_l = m - i - 1.0;
13529371c9d4SSatish Balay y_r = y_l + 1.0;
1353d4002b98SHong Zhang for (j = 0; j < a->rlen[i]; j++) {
135407e43b41SHong Zhang x_l = a->colidx[shift + a->sliceheight * j];
13559371c9d4SSatish Balay x_r = x_l + 1.0;
135607e43b41SHong Zhang if (PetscRealPart(a->val[shift + a->sliceheight * j]) <= 0.) continue;
13579566063dSJacob Faibussowitsch PetscCall(PetscDrawRectangle(draw, x_l, y_l, x_r, y_r, color, color, color, color));
1358d4002b98SHong Zhang }
1359d4002b98SHong Zhang }
1360d0609cedSBarry Smith PetscDrawCollectiveEnd(draw);
1361d4002b98SHong Zhang } else {
1362d4002b98SHong Zhang /* use contour shading to indicate magnitude of values */
1363d4002b98SHong Zhang /* first determine max of all nonzero values */
1364d4002b98SHong Zhang PetscReal minv = 0.0, maxv = 0.0;
1365d4002b98SHong Zhang PetscInt count = 0;
1366d4002b98SHong Zhang PetscDraw popup;
1367d4002b98SHong Zhang for (i = 0; i < a->sliidx[a->totalslices]; i++) {
1368d4002b98SHong Zhang if (PetscAbsScalar(a->val[i]) > maxv) maxv = PetscAbsScalar(a->val[i]);
1369d4002b98SHong Zhang }
1370d4002b98SHong Zhang if (minv >= maxv) maxv = minv + PETSC_SMALL;
13719566063dSJacob Faibussowitsch PetscCall(PetscDrawGetPopup(draw, &popup));
13729566063dSJacob Faibussowitsch PetscCall(PetscDrawScalePopup(popup, minv, maxv));
1373d4002b98SHong Zhang
1374d0609cedSBarry Smith PetscDrawCollectiveBegin(draw);
1375d4002b98SHong Zhang for (i = 0; i < m; i++) {
137607e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight;
1377d4002b98SHong Zhang y_l = m - i - 1.0;
1378d4002b98SHong Zhang y_r = y_l + 1.0;
1379d4002b98SHong Zhang for (j = 0; j < a->rlen[i]; j++) {
138007e43b41SHong Zhang x_l = a->colidx[shift + a->sliceheight * j];
1381d4002b98SHong Zhang x_r = x_l + 1.0;
1382d4002b98SHong Zhang color = PetscDrawRealToColor(PetscAbsScalar(a->val[count]), minv, maxv);
13839566063dSJacob Faibussowitsch PetscCall(PetscDrawRectangle(draw, x_l, y_l, x_r, y_r, color, color, color, color));
1384d4002b98SHong Zhang count++;
1385d4002b98SHong Zhang }
1386d4002b98SHong Zhang }
1387d0609cedSBarry Smith PetscDrawCollectiveEnd(draw);
1388d4002b98SHong Zhang }
13893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1390d4002b98SHong Zhang }
1391d4002b98SHong Zhang
1392d4002b98SHong Zhang #include <petscdraw.h>
MatView_SeqSELL_Draw(Mat A,PetscViewer viewer)1393ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_SeqSELL_Draw(Mat A, PetscViewer viewer)
1394d71ae5a4SJacob Faibussowitsch {
1395d4002b98SHong Zhang PetscDraw draw;
1396d4002b98SHong Zhang PetscReal xr, yr, xl, yl, h, w;
1397d4002b98SHong Zhang PetscBool isnull;
1398d4002b98SHong Zhang
1399d4002b98SHong Zhang PetscFunctionBegin;
14009566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
14019566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull));
14023ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
1403d4002b98SHong Zhang
14049371c9d4SSatish Balay xr = A->cmap->n;
14059371c9d4SSatish Balay yr = A->rmap->n;
14069371c9d4SSatish Balay h = yr / 10.0;
14079371c9d4SSatish Balay w = xr / 10.0;
14089371c9d4SSatish Balay xr += w;
14099371c9d4SSatish Balay yr += h;
14109371c9d4SSatish Balay xl = -w;
14119371c9d4SSatish Balay yl = -h;
14129566063dSJacob Faibussowitsch PetscCall(PetscDrawSetCoordinates(draw, xl, yl, xr, yr));
14139566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "Zoomviewer", (PetscObject)viewer));
14149566063dSJacob Faibussowitsch PetscCall(PetscDrawZoom(draw, MatView_SeqSELL_Draw_Zoom, A));
14159566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "Zoomviewer", NULL));
14169566063dSJacob Faibussowitsch PetscCall(PetscDrawSave(draw));
14173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1418d4002b98SHong Zhang }
1419d4002b98SHong Zhang
MatView_SeqSELL(Mat A,PetscViewer viewer)1420d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_SeqSELL(Mat A, PetscViewer viewer)
1421d71ae5a4SJacob Faibussowitsch {
14229f196a02SMartin Diehl PetscBool isascii, isbinary, isdraw;
1423d4002b98SHong Zhang
1424d4002b98SHong Zhang PetscFunctionBegin;
14259f196a02SMartin Diehl PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii));
14269566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
14279566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
14289f196a02SMartin Diehl if (isascii) {
14299566063dSJacob Faibussowitsch PetscCall(MatView_SeqSELL_ASCII(A, viewer));
1430d4002b98SHong Zhang } else if (isbinary) {
14319566063dSJacob Faibussowitsch /* PetscCall(MatView_SeqSELL_Binary(A,viewer)); */
14321baa6e33SBarry Smith } else if (isdraw) PetscCall(MatView_SeqSELL_Draw(A, viewer));
14333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1434d4002b98SHong Zhang }
1435d4002b98SHong Zhang
MatAssemblyEnd_SeqSELL(Mat A,MatAssemblyType mode)1436d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_SeqSELL(Mat A, MatAssemblyType mode)
1437d71ae5a4SJacob Faibussowitsch {
1438d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
1439d4002b98SHong Zhang PetscInt i, shift, row_in_slice, row, nrow, *cp, lastcol, j, k;
1440d4002b98SHong Zhang MatScalar *vp;
1441773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
144290d2215bSHong Zhang PetscInt totalchunks = 0;
144390d2215bSHong Zhang #endif
1444d4002b98SHong Zhang
1445d4002b98SHong Zhang PetscFunctionBegin;
14463ba16761SJacob Faibussowitsch if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(PETSC_SUCCESS);
1447d4002b98SHong Zhang /* To do: compress out the unused elements */
14489566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Matrix size: %" PetscInt_FMT " X %" PetscInt_FMT "; storage space: %" PetscInt_FMT " allocated %" PetscInt_FMT " used (%" PetscInt_FMT " nonzeros+%" PetscInt_FMT " paddedzeros)\n", A->rmap->n, A->cmap->n, a->maxallocmat, a->sliidx[a->totalslices], a->nz, a->sliidx[a->totalslices] - a->nz));
14499566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Number of mallocs during MatSetValues() is %" PetscInt_FMT "\n", a->reallocs));
14509566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Maximum nonzeros in any row is %" PetscInt_FMT "\n", a->rlenmax));
14512d1451d4SHong Zhang a->nonzerorowcnt = 0;
1452d4002b98SHong Zhang /* Set unused slots for column indices to last valid column index. Set unused slots for values to zero. This allows for a use of unmasked intrinsics -> higher performance */
1453d4002b98SHong Zhang for (i = 0; i < a->totalslices; ++i) {
1454d4002b98SHong Zhang shift = a->sliidx[i]; /* starting index of the slice */
14558e3a54c0SPierre Jolivet cp = PetscSafePointerPlusOffset(a->colidx, shift); /* pointer to the column indices of the slice */
14568e3a54c0SPierre Jolivet vp = PetscSafePointerPlusOffset(a->val, shift); /* pointer to the nonzero values of the slice */
145707e43b41SHong Zhang for (row_in_slice = 0; row_in_slice < a->sliceheight; ++row_in_slice) { /* loop over rows in the slice */
145807e43b41SHong Zhang row = a->sliceheight * i + row_in_slice;
1459d4002b98SHong Zhang nrow = a->rlen[row]; /* number of nonzeros in row */
1460d4002b98SHong Zhang /*
1461d4002b98SHong Zhang Search for the nearest nonzero. Normally setting the index to zero may cause extra communication.
1462d4002b98SHong Zhang But if the entire slice are empty, it is fine to use 0 since the index will not be loaded.
1463d4002b98SHong Zhang */
1464d4002b98SHong Zhang lastcol = 0;
1465d4002b98SHong Zhang if (nrow > 0) { /* nonempty row */
14662d1451d4SHong Zhang a->nonzerorowcnt++;
146707e43b41SHong Zhang lastcol = cp[a->sliceheight * (nrow - 1) + row_in_slice]; /* use the index from the last nonzero at current row */
1468aaa8cc7dSPierre Jolivet } else if (!row_in_slice) { /* first row of the correct slice is empty */
146907e43b41SHong Zhang for (j = 1; j < a->sliceheight; j++) {
147007e43b41SHong Zhang if (a->rlen[a->sliceheight * i + j]) {
1471d4002b98SHong Zhang lastcol = cp[j];
1472d4002b98SHong Zhang break;
1473d4002b98SHong Zhang }
1474d4002b98SHong Zhang }
1475d4002b98SHong Zhang } else {
1476d4002b98SHong Zhang if (a->sliidx[i + 1] != shift) lastcol = cp[row_in_slice - 1]; /* use the index from the previous row */
1477d4002b98SHong Zhang }
1478d4002b98SHong Zhang
147907e43b41SHong Zhang for (k = nrow; k < (a->sliidx[i + 1] - shift) / a->sliceheight; ++k) {
148007e43b41SHong Zhang cp[a->sliceheight * k + row_in_slice] = lastcol;
148107e43b41SHong Zhang vp[a->sliceheight * k + row_in_slice] = (MatScalar)0;
1482d4002b98SHong Zhang }
1483d4002b98SHong Zhang }
1484d4002b98SHong Zhang }
1485d4002b98SHong Zhang
1486d4002b98SHong Zhang A->info.mallocs += a->reallocs;
1487d4002b98SHong Zhang a->reallocs = 0;
1488d4002b98SHong Zhang
1489773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
149090d2215bSHong Zhang if (!a->chunksize && a->totalslices) {
149190d2215bSHong Zhang a->chunksize = 64;
149290d2215bSHong Zhang while (a->chunksize < 1024 && 2 * a->chunksize <= a->sliidx[a->totalslices] / a->totalslices) a->chunksize *= 2;
149390d2215bSHong Zhang totalchunks = 1 + (a->sliidx[a->totalslices] - 1) / a->chunksize;
149490d2215bSHong Zhang }
149590d2215bSHong Zhang if (totalchunks != a->totalchunks) {
149690d2215bSHong Zhang PetscCall(PetscFree(a->chunk_slice_map));
149790d2215bSHong Zhang PetscCall(PetscMalloc1(totalchunks, &a->chunk_slice_map));
149890d2215bSHong Zhang a->totalchunks = totalchunks;
149990d2215bSHong Zhang }
150090d2215bSHong Zhang j = 0;
150190d2215bSHong Zhang for (i = 0; i < totalchunks; i++) {
150290d2215bSHong Zhang while (a->sliidx[j + 1] <= i * a->chunksize && j < a->totalslices) j++;
150390d2215bSHong Zhang a->chunk_slice_map[i] = j;
150490d2215bSHong Zhang }
150590d2215bSHong Zhang #endif
15063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1507d4002b98SHong Zhang }
1508d4002b98SHong Zhang
MatGetInfo_SeqSELL(Mat A,MatInfoType flag,MatInfo * info)1509d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetInfo_SeqSELL(Mat A, MatInfoType flag, MatInfo *info)
1510d71ae5a4SJacob Faibussowitsch {
1511d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
1512d4002b98SHong Zhang
1513d4002b98SHong Zhang PetscFunctionBegin;
1514d4002b98SHong Zhang info->block_size = 1.0;
15153966268fSBarry Smith info->nz_allocated = a->maxallocmat;
15163966268fSBarry Smith info->nz_used = a->sliidx[a->totalslices]; /* include padding zeros */
15173966268fSBarry Smith info->nz_unneeded = (a->maxallocmat - a->sliidx[a->totalslices]);
15183966268fSBarry Smith info->assemblies = A->num_ass;
15193966268fSBarry Smith info->mallocs = A->info.mallocs;
15204dfa11a4SJacob Faibussowitsch info->memory = 0; /* REVIEW ME */
1521d4002b98SHong Zhang if (A->factortype) {
1522d4002b98SHong Zhang info->fill_ratio_given = A->info.fill_ratio_given;
1523d4002b98SHong Zhang info->fill_ratio_needed = A->info.fill_ratio_needed;
1524d4002b98SHong Zhang info->factor_mallocs = A->info.factor_mallocs;
1525d4002b98SHong Zhang } else {
1526d4002b98SHong Zhang info->fill_ratio_given = 0;
1527d4002b98SHong Zhang info->fill_ratio_needed = 0;
1528d4002b98SHong Zhang info->factor_mallocs = 0;
1529d4002b98SHong Zhang }
15303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1531d4002b98SHong Zhang }
1532d4002b98SHong Zhang
MatSetValues_SeqSELL(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is)1533d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_SeqSELL(Mat A, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode is)
1534d71ae5a4SJacob Faibussowitsch {
1535d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
1536d4002b98SHong Zhang PetscInt shift, i, k, l, low, high, t, ii, row, col, nrow;
1537d4002b98SHong Zhang PetscInt *cp, nonew = a->nonew, lastcol = -1;
1538d4002b98SHong Zhang MatScalar *vp, value;
1539773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
15402d1451d4SHong Zhang PetscBool inserted = PETSC_FALSE;
15414e58db63SHong Zhang PetscInt mul = DEVICE_MEM_ALIGN / a->sliceheight;
15422d1451d4SHong Zhang #endif
1543d4002b98SHong Zhang
1544d4002b98SHong Zhang PetscFunctionBegin;
1545d4002b98SHong Zhang for (k = 0; k < m; k++) { /* loop over added rows */
1546d4002b98SHong Zhang row = im[k];
1547d4002b98SHong Zhang if (row < 0) continue;
15486bdcaf15SBarry Smith PetscCheck(row < A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, row, A->rmap->n - 1);
154907e43b41SHong Zhang shift = a->sliidx[row / a->sliceheight] + row % a->sliceheight; /* starting index of the row */
1550d4002b98SHong Zhang cp = a->colidx + shift; /* pointer to the row */
1551d4002b98SHong Zhang vp = a->val + shift; /* pointer to the row */
1552d4002b98SHong Zhang nrow = a->rlen[row];
1553d4002b98SHong Zhang low = 0;
1554d4002b98SHong Zhang high = nrow;
1555d4002b98SHong Zhang
1556d4002b98SHong Zhang for (l = 0; l < n; l++) { /* loop over added columns */
1557d4002b98SHong Zhang col = in[l];
1558d4002b98SHong Zhang if (col < 0) continue;
15596bdcaf15SBarry Smith PetscCheck(col < A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Col too large: row %" PetscInt_FMT " max %" PetscInt_FMT, col, A->cmap->n - 1);
1560d4002b98SHong Zhang if (a->roworiented) {
1561d4002b98SHong Zhang value = v[l + k * n];
1562d4002b98SHong Zhang } else {
1563d4002b98SHong Zhang value = v[k + l * m];
1564d4002b98SHong Zhang }
1565d4002b98SHong Zhang if ((value == 0.0 && a->ignorezeroentries) && (is == ADD_VALUES)) continue;
1566d4002b98SHong Zhang
1567ed73aabaSBarry Smith /* search in this row for the specified column, i indicates the column to be set */
1568d4002b98SHong Zhang if (col <= lastcol) low = 0;
1569d4002b98SHong Zhang else high = nrow;
1570d4002b98SHong Zhang lastcol = col;
1571d4002b98SHong Zhang while (high - low > 5) {
1572d4002b98SHong Zhang t = (low + high) / 2;
157307e43b41SHong Zhang if (*(cp + a->sliceheight * t) > col) high = t;
1574d4002b98SHong Zhang else low = t;
1575d4002b98SHong Zhang }
1576d4002b98SHong Zhang for (i = low; i < high; i++) {
157707e43b41SHong Zhang if (*(cp + a->sliceheight * i) > col) break;
157807e43b41SHong Zhang if (*(cp + a->sliceheight * i) == col) {
157907e43b41SHong Zhang if (is == ADD_VALUES) *(vp + a->sliceheight * i) += value;
158007e43b41SHong Zhang else *(vp + a->sliceheight * i) = value;
1581773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
15822d1451d4SHong Zhang inserted = PETSC_TRUE;
15832d1451d4SHong Zhang #endif
1584d4002b98SHong Zhang low = i + 1;
1585d4002b98SHong Zhang goto noinsert;
1586d4002b98SHong Zhang }
1587d4002b98SHong Zhang }
1588d4002b98SHong Zhang if (value == 0.0 && a->ignorezeroentries) goto noinsert;
1589d4002b98SHong Zhang if (nonew == 1) goto noinsert;
159008401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", row, col);
1591773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
15924e58db63SHong Zhang MatSeqXSELLReallocateSELL(A, A->rmap->n, 1, nrow, a->sliidx, a->sliceheight, row / a->sliceheight, row, col, a->colidx, a->val, cp, vp, nonew, MatScalar, mul);
15934e58db63SHong Zhang #else
1594d4002b98SHong Zhang /* If the current row length exceeds the slice width (e.g. nrow==slice_width), allocate a new space, otherwise do nothing */
15954e58db63SHong Zhang MatSeqXSELLReallocateSELL(A, A->rmap->n, 1, nrow, a->sliidx, a->sliceheight, row / a->sliceheight, row, col, a->colidx, a->val, cp, vp, nonew, MatScalar, 1);
15964e58db63SHong Zhang #endif
1597d4002b98SHong Zhang /* add the new nonzero to the high position, shift the remaining elements in current row to the right by one slot */
1598d4002b98SHong Zhang for (ii = nrow - 1; ii >= i; ii--) {
159907e43b41SHong Zhang *(cp + a->sliceheight * (ii + 1)) = *(cp + a->sliceheight * ii);
160007e43b41SHong Zhang *(vp + a->sliceheight * (ii + 1)) = *(vp + a->sliceheight * ii);
1601d4002b98SHong Zhang }
1602d4002b98SHong Zhang a->rlen[row]++;
160307e43b41SHong Zhang *(cp + a->sliceheight * i) = col;
160407e43b41SHong Zhang *(vp + a->sliceheight * i) = value;
1605d4002b98SHong Zhang a->nz++;
1606773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
16072d1451d4SHong Zhang inserted = PETSC_TRUE;
16082d1451d4SHong Zhang #endif
16099371c9d4SSatish Balay low = i + 1;
16109371c9d4SSatish Balay high++;
16119371c9d4SSatish Balay nrow++;
1612d4002b98SHong Zhang noinsert:;
1613d4002b98SHong Zhang }
1614d4002b98SHong Zhang a->rlen[row] = nrow;
1615d4002b98SHong Zhang }
1616773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
16172d1451d4SHong Zhang if (A->offloadmask != PETSC_OFFLOAD_UNALLOCATED && inserted) A->offloadmask = PETSC_OFFLOAD_CPU;
16182d1451d4SHong Zhang #endif
16193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1620d4002b98SHong Zhang }
1621d4002b98SHong Zhang
MatCopy_SeqSELL(Mat A,Mat B,MatStructure str)1622d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCopy_SeqSELL(Mat A, Mat B, MatStructure str)
1623d71ae5a4SJacob Faibussowitsch {
1624d4002b98SHong Zhang PetscFunctionBegin;
1625d4002b98SHong Zhang /* If the two matrices have the same copy implementation, use fast copy. */
1626d4002b98SHong Zhang if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) {
1627d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
1628d4002b98SHong Zhang Mat_SeqSELL *b = (Mat_SeqSELL *)B->data;
1629d4002b98SHong Zhang
163008401ef6SPierre Jolivet PetscCheck(a->sliidx[a->totalslices] == b->sliidx[b->totalslices], PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Number of nonzeros in two matrices are different");
16319566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(b->val, a->val, a->sliidx[a->totalslices]));
1632d4002b98SHong Zhang } else {
16339566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str));
1634d4002b98SHong Zhang }
16353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1636d4002b98SHong Zhang }
1637d4002b98SHong Zhang
MatSetUp_SeqSELL(Mat A)1638d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetUp_SeqSELL(Mat A)
1639d71ae5a4SJacob Faibussowitsch {
1640d4002b98SHong Zhang PetscFunctionBegin;
16419566063dSJacob Faibussowitsch PetscCall(MatSeqSELLSetPreallocation(A, PETSC_DEFAULT, NULL));
16423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1643d4002b98SHong Zhang }
1644d4002b98SHong Zhang
MatSeqSELLGetArray_SeqSELL(Mat A,PetscScalar * array[])1645d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLGetArray_SeqSELL(Mat A, PetscScalar *array[])
1646d71ae5a4SJacob Faibussowitsch {
1647d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
1648d4002b98SHong Zhang
1649d4002b98SHong Zhang PetscFunctionBegin;
1650d4002b98SHong Zhang *array = a->val;
16513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1652d4002b98SHong Zhang }
1653d4002b98SHong Zhang
MatSeqSELLRestoreArray_SeqSELL(Mat A,PetscScalar * array[])1654d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqSELLRestoreArray_SeqSELL(Mat A, PetscScalar *array[])
1655d71ae5a4SJacob Faibussowitsch {
1656d4002b98SHong Zhang PetscFunctionBegin;
16573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1658d4002b98SHong Zhang }
1659d4002b98SHong Zhang
MatScale_SeqSELL(Mat inA,PetscScalar alpha)1660d71ae5a4SJacob Faibussowitsch PetscErrorCode MatScale_SeqSELL(Mat inA, PetscScalar alpha)
1661d71ae5a4SJacob Faibussowitsch {
1662d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)inA->data;
1663d4002b98SHong Zhang MatScalar *aval = a->val;
1664d4002b98SHong Zhang PetscScalar oalpha = alpha;
1665d4002b98SHong Zhang PetscBLASInt one = 1, size;
1666d4002b98SHong Zhang
1667d4002b98SHong Zhang PetscFunctionBegin;
16689566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(a->sliidx[a->totalslices], &size));
1669792fecdfSBarry Smith PetscCallBLAS("BLASscal", BLASscal_(&size, &oalpha, aval, &one));
16709566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(a->nz));
1671773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
16722d1451d4SHong Zhang if (inA->offloadmask != PETSC_OFFLOAD_UNALLOCATED) inA->offloadmask = PETSC_OFFLOAD_CPU;
16732d1451d4SHong Zhang #endif
16743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1675d4002b98SHong Zhang }
1676d4002b98SHong Zhang
MatShift_SeqSELL(Mat Y,PetscScalar a)1677d71ae5a4SJacob Faibussowitsch PetscErrorCode MatShift_SeqSELL(Mat Y, PetscScalar a)
1678d71ae5a4SJacob Faibussowitsch {
1679d4002b98SHong Zhang Mat_SeqSELL *y = (Mat_SeqSELL *)Y->data;
1680d4002b98SHong Zhang
1681d4002b98SHong Zhang PetscFunctionBegin;
168248a46eb9SPierre Jolivet if (!Y->preallocated || !y->nz) PetscCall(MatSeqSELLSetPreallocation(Y, 1, NULL));
16839566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a));
16843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1685d4002b98SHong Zhang }
1686d4002b98SHong Zhang
MatSOR_SeqSELL(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)1687d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSOR_SeqSELL(Mat A, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
1688d71ae5a4SJacob Faibussowitsch {
1689d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
1690d4002b98SHong Zhang PetscScalar *x, sum, *t;
1691f4259b30SLisandro Dalcin const MatScalar *idiag = NULL, *mdiag;
1692d4002b98SHong Zhang const PetscScalar *b, *xb;
1693d4002b98SHong Zhang PetscInt n, m = A->rmap->n, i, j, shift;
1694d4002b98SHong Zhang const PetscInt *diag;
1695d4002b98SHong Zhang
1696d4002b98SHong Zhang PetscFunctionBegin;
1697d4002b98SHong Zhang its = its * lits;
1698d4002b98SHong Zhang
169907425a8dSBarry Smith PetscCall(MatInvertDiagonalForSOR_SeqSELL(A, omega, fshift));
1700d4002b98SHong Zhang diag = a->diag;
1701d4002b98SHong Zhang t = a->ssor_work;
1702d4002b98SHong Zhang idiag = a->idiag;
1703d4002b98SHong Zhang mdiag = a->mdiag;
1704d4002b98SHong Zhang
17059566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx, &x));
17069566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb, &b));
1707d4002b98SHong Zhang /* We count flops by assuming the upper triangular and lower triangular parts have the same number of nonzeros */
170808401ef6SPierre Jolivet PetscCheck(flag != SOR_APPLY_UPPER, PETSC_COMM_SELF, PETSC_ERR_SUP, "SOR_APPLY_UPPER is not implemented");
170908401ef6SPierre Jolivet PetscCheck(flag != SOR_APPLY_LOWER, PETSC_COMM_SELF, PETSC_ERR_SUP, "SOR_APPLY_LOWER is not implemented");
1710aed4548fSBarry Smith PetscCheck(!(flag & SOR_EISENSTAT), PETSC_COMM_SELF, PETSC_ERR_SUP, "No support yet for Eisenstat");
1711d4002b98SHong Zhang
1712d4002b98SHong Zhang if (flag & SOR_ZERO_INITIAL_GUESS) {
1713d4002b98SHong Zhang if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) {
1714d4002b98SHong Zhang for (i = 0; i < m; i++) {
171507e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */
1716d4002b98SHong Zhang sum = b[i];
171707e43b41SHong Zhang n = (diag[i] - shift) / a->sliceheight;
171807e43b41SHong Zhang for (j = 0; j < n; j++) sum -= a->val[shift + a->sliceheight * j] * x[a->colidx[shift + a->sliceheight * j]];
1719d4002b98SHong Zhang t[i] = sum;
1720d4002b98SHong Zhang x[i] = sum * idiag[i];
1721d4002b98SHong Zhang }
1722d4002b98SHong Zhang xb = t;
17239566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(a->nz));
1724d4002b98SHong Zhang } else xb = b;
1725d4002b98SHong Zhang if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) {
1726d4002b98SHong Zhang for (i = m - 1; i >= 0; i--) {
172707e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */
1728d4002b98SHong Zhang sum = xb[i];
172907e43b41SHong Zhang n = a->rlen[i] - (diag[i] - shift) / a->sliceheight - 1;
173007e43b41SHong Zhang for (j = 1; j <= n; j++) sum -= a->val[diag[i] + a->sliceheight * j] * x[a->colidx[diag[i] + a->sliceheight * j]];
1731d4002b98SHong Zhang if (xb == b) {
1732d4002b98SHong Zhang x[i] = sum * idiag[i];
1733d4002b98SHong Zhang } else {
1734d4002b98SHong Zhang x[i] = (1. - omega) * x[i] + sum * idiag[i]; /* omega in idiag */
1735d4002b98SHong Zhang }
1736d4002b98SHong Zhang }
17379566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(a->nz)); /* assumes 1/2 in upper */
1738d4002b98SHong Zhang }
1739d4002b98SHong Zhang its--;
1740d4002b98SHong Zhang }
1741d4002b98SHong Zhang while (its--) {
1742d4002b98SHong Zhang if ((flag & SOR_FORWARD_SWEEP) || (flag & SOR_LOCAL_FORWARD_SWEEP)) {
1743d4002b98SHong Zhang for (i = 0; i < m; i++) {
1744d4002b98SHong Zhang /* lower */
174507e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */
1746d4002b98SHong Zhang sum = b[i];
174707e43b41SHong Zhang n = (diag[i] - shift) / a->sliceheight;
174807e43b41SHong Zhang for (j = 0; j < n; j++) sum -= a->val[shift + a->sliceheight * j] * x[a->colidx[shift + a->sliceheight * j]];
1749d4002b98SHong Zhang t[i] = sum; /* save application of the lower-triangular part */
1750d4002b98SHong Zhang /* upper */
175107e43b41SHong Zhang n = a->rlen[i] - (diag[i] - shift) / a->sliceheight - 1;
175207e43b41SHong Zhang for (j = 1; j <= n; j++) sum -= a->val[diag[i] + a->sliceheight * j] * x[a->colidx[diag[i] + a->sliceheight * j]];
1753d4002b98SHong Zhang x[i] = (1. - omega) * x[i] + sum * idiag[i]; /* omega in idiag */
1754d4002b98SHong Zhang }
1755d4002b98SHong Zhang xb = t;
17569566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * a->nz));
1757d4002b98SHong Zhang } else xb = b;
1758d4002b98SHong Zhang if ((flag & SOR_BACKWARD_SWEEP) || (flag & SOR_LOCAL_BACKWARD_SWEEP)) {
1759d4002b98SHong Zhang for (i = m - 1; i >= 0; i--) {
176007e43b41SHong Zhang shift = a->sliidx[i / a->sliceheight] + i % a->sliceheight; /* starting index of the row i */
1761d4002b98SHong Zhang sum = xb[i];
1762d4002b98SHong Zhang if (xb == b) {
1763d4002b98SHong Zhang /* whole matrix (no checkpointing available) */
1764d4002b98SHong Zhang n = a->rlen[i];
176507e43b41SHong Zhang for (j = 0; j < n; j++) sum -= a->val[shift + a->sliceheight * j] * x[a->colidx[shift + a->sliceheight * j]];
1766d4002b98SHong Zhang x[i] = (1. - omega) * x[i] + (sum + mdiag[i] * x[i]) * idiag[i];
1767d4002b98SHong Zhang } else { /* lower-triangular part has been saved, so only apply upper-triangular */
176807e43b41SHong Zhang n = a->rlen[i] - (diag[i] - shift) / a->sliceheight - 1;
176907e43b41SHong Zhang for (j = 1; j <= n; j++) sum -= a->val[diag[i] + a->sliceheight * j] * x[a->colidx[diag[i] + a->sliceheight * j]];
1770d4002b98SHong Zhang x[i] = (1. - omega) * x[i] + sum * idiag[i]; /* omega in idiag */
1771d4002b98SHong Zhang }
1772d4002b98SHong Zhang }
1773d4002b98SHong Zhang if (xb == b) {
17749566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * a->nz));
1775d4002b98SHong Zhang } else {
17769566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(a->nz)); /* assumes 1/2 in upper */
1777d4002b98SHong Zhang }
1778d4002b98SHong Zhang }
1779d4002b98SHong Zhang }
17809566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx, &x));
17819566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb, &b));
17823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1783d4002b98SHong Zhang }
1784d4002b98SHong Zhang
1785d4002b98SHong Zhang static struct _MatOps MatOps_Values = {MatSetValues_SeqSELL,
17866108893eSStefano Zampini MatGetRow_SeqSELL,
17876108893eSStefano Zampini MatRestoreRow_SeqSELL,
1788d4002b98SHong Zhang MatMult_SeqSELL,
1789d4002b98SHong Zhang /* 4*/ MatMultAdd_SeqSELL,
1790d4002b98SHong Zhang MatMultTranspose_SeqSELL,
1791d4002b98SHong Zhang MatMultTransposeAdd_SeqSELL,
1792f4259b30SLisandro Dalcin NULL,
1793f4259b30SLisandro Dalcin NULL,
1794f4259b30SLisandro Dalcin NULL,
1795f4259b30SLisandro Dalcin /* 10*/ NULL,
1796f4259b30SLisandro Dalcin NULL,
1797f4259b30SLisandro Dalcin NULL,
1798d4002b98SHong Zhang MatSOR_SeqSELL,
1799f4259b30SLisandro Dalcin NULL,
1800d4002b98SHong Zhang /* 15*/ MatGetInfo_SeqSELL,
1801d4002b98SHong Zhang MatEqual_SeqSELL,
1802d4002b98SHong Zhang MatGetDiagonal_SeqSELL,
1803d4002b98SHong Zhang MatDiagonalScale_SeqSELL,
1804f4259b30SLisandro Dalcin NULL,
1805f4259b30SLisandro Dalcin /* 20*/ NULL,
1806d4002b98SHong Zhang MatAssemblyEnd_SeqSELL,
1807d4002b98SHong Zhang MatSetOption_SeqSELL,
1808d4002b98SHong Zhang MatZeroEntries_SeqSELL,
1809f4259b30SLisandro Dalcin /* 24*/ NULL,
1810f4259b30SLisandro Dalcin NULL,
1811f4259b30SLisandro Dalcin NULL,
1812f4259b30SLisandro Dalcin NULL,
1813f4259b30SLisandro Dalcin NULL,
1814d4002b98SHong Zhang /* 29*/ MatSetUp_SeqSELL,
1815f4259b30SLisandro Dalcin NULL,
1816f4259b30SLisandro Dalcin NULL,
1817f4259b30SLisandro Dalcin NULL,
1818f4259b30SLisandro Dalcin NULL,
1819d4002b98SHong Zhang /* 34*/ MatDuplicate_SeqSELL,
1820f4259b30SLisandro Dalcin NULL,
1821f4259b30SLisandro Dalcin NULL,
1822f4259b30SLisandro Dalcin NULL,
1823f4259b30SLisandro Dalcin NULL,
1824f4259b30SLisandro Dalcin /* 39*/ NULL,
1825f4259b30SLisandro Dalcin NULL,
1826f4259b30SLisandro Dalcin NULL,
1827d4002b98SHong Zhang MatGetValues_SeqSELL,
1828d4002b98SHong Zhang MatCopy_SeqSELL,
1829f4259b30SLisandro Dalcin /* 44*/ NULL,
1830d4002b98SHong Zhang MatScale_SeqSELL,
1831d4002b98SHong Zhang MatShift_SeqSELL,
1832f4259b30SLisandro Dalcin NULL,
1833f4259b30SLisandro Dalcin NULL,
1834f4259b30SLisandro Dalcin /* 49*/ NULL,
1835f4259b30SLisandro Dalcin NULL,
1836f4259b30SLisandro Dalcin NULL,
1837f4259b30SLisandro Dalcin NULL,
1838f4259b30SLisandro Dalcin NULL,
1839d4002b98SHong Zhang /* 54*/ MatFDColoringCreate_SeqXAIJ,
1840f4259b30SLisandro Dalcin NULL,
1841f4259b30SLisandro Dalcin NULL,
1842f4259b30SLisandro Dalcin NULL,
1843f4259b30SLisandro Dalcin NULL,
1844f4259b30SLisandro Dalcin /* 59*/ NULL,
1845d4002b98SHong Zhang MatDestroy_SeqSELL,
1846d4002b98SHong Zhang MatView_SeqSELL,
1847f4259b30SLisandro Dalcin NULL,
1848f4259b30SLisandro Dalcin NULL,
1849f4259b30SLisandro Dalcin /* 64*/ NULL,
1850f4259b30SLisandro Dalcin NULL,
1851f4259b30SLisandro Dalcin NULL,
1852f4259b30SLisandro Dalcin NULL,
1853f4259b30SLisandro Dalcin NULL,
1854f4259b30SLisandro Dalcin /* 69*/ NULL,
1855f4259b30SLisandro Dalcin NULL,
1856f4259b30SLisandro Dalcin NULL,
18578bb0f5c6SPierre Jolivet MatFDColoringApply_AIJ, /* reuse the FDColoring function for AIJ */
1858f4259b30SLisandro Dalcin NULL,
1859f4259b30SLisandro Dalcin /* 74*/ NULL,
18608bb0f5c6SPierre Jolivet NULL,
1861f4259b30SLisandro Dalcin NULL,
1862f4259b30SLisandro Dalcin NULL,
1863f4259b30SLisandro Dalcin NULL,
1864f4259b30SLisandro Dalcin /* 79*/ NULL,
1865f4259b30SLisandro Dalcin NULL,
1866f4259b30SLisandro Dalcin NULL,
1867f4259b30SLisandro Dalcin NULL,
1868f4259b30SLisandro Dalcin NULL,
1869f4259b30SLisandro Dalcin /* 84*/ NULL,
1870f4259b30SLisandro Dalcin NULL,
1871f4259b30SLisandro Dalcin NULL,
1872f4259b30SLisandro Dalcin NULL,
1873f4259b30SLisandro Dalcin NULL,
1874f4259b30SLisandro Dalcin /* 89*/ NULL,
1875f4259b30SLisandro Dalcin NULL,
1876f4259b30SLisandro Dalcin NULL,
1877f4259b30SLisandro Dalcin NULL,
18788bb0f5c6SPierre Jolivet MatConjugate_SeqSELL,
1879f4259b30SLisandro Dalcin /* 94*/ NULL,
1880f4259b30SLisandro Dalcin NULL,
1881f4259b30SLisandro Dalcin NULL,
1882f4259b30SLisandro Dalcin NULL,
1883f4259b30SLisandro Dalcin NULL,
1884f4259b30SLisandro Dalcin /* 99*/ NULL,
1885f4259b30SLisandro Dalcin NULL,
1886f4259b30SLisandro Dalcin NULL,
1887f4259b30SLisandro Dalcin NULL,
18888bb0f5c6SPierre Jolivet NULL,
1889421480d9SBarry Smith /*104*/ NULL,
1890f4259b30SLisandro Dalcin NULL,
1891f4259b30SLisandro Dalcin NULL,
1892f4259b30SLisandro Dalcin NULL,
1893f4259b30SLisandro Dalcin NULL,
1894f4259b30SLisandro Dalcin /*109*/ NULL,
1895f4259b30SLisandro Dalcin NULL,
1896f4259b30SLisandro Dalcin NULL,
1897f4259b30SLisandro Dalcin NULL,
18988bb0f5c6SPierre Jolivet NULL,
1899f4259b30SLisandro Dalcin /*114*/ NULL,
1900f4259b30SLisandro Dalcin NULL,
1901f4259b30SLisandro Dalcin NULL,
1902f4259b30SLisandro Dalcin NULL,
1903f4259b30SLisandro Dalcin NULL,
1904f4259b30SLisandro Dalcin /*119*/ NULL,
1905f4259b30SLisandro Dalcin NULL,
1906f4259b30SLisandro Dalcin NULL,
1907f4259b30SLisandro Dalcin NULL,
1908f4259b30SLisandro Dalcin NULL,
1909f4259b30SLisandro Dalcin /*124*/ NULL,
1910f4259b30SLisandro Dalcin NULL,
1911f4259b30SLisandro Dalcin NULL,
1912f4259b30SLisandro Dalcin NULL,
1913421480d9SBarry Smith MatFDColoringSetUp_SeqXAIJ,
1914421480d9SBarry Smith /*129*/ NULL,
1915f4259b30SLisandro Dalcin NULL,
1916f4259b30SLisandro Dalcin NULL,
1917f4259b30SLisandro Dalcin NULL,
1918f4259b30SLisandro Dalcin NULL,
1919f4259b30SLisandro Dalcin /*134*/ NULL,
1920f4259b30SLisandro Dalcin NULL,
1921f4259b30SLisandro Dalcin NULL,
1922f4259b30SLisandro Dalcin NULL,
1923f4259b30SLisandro Dalcin NULL,
1924f4259b30SLisandro Dalcin /*139*/ NULL,
1925f4259b30SLisandro Dalcin NULL,
1926f4259b30SLisandro Dalcin NULL,
192703db1824SAlex Lindsay NULL,
1928dec0b466SHong Zhang NULL};
1929d4002b98SHong Zhang
MatStoreValues_SeqSELL(Mat mat)1930ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_SeqSELL(Mat mat)
1931d71ae5a4SJacob Faibussowitsch {
1932d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data;
1933d4002b98SHong Zhang
1934d4002b98SHong Zhang PetscFunctionBegin;
193528b400f6SJacob Faibussowitsch PetscCheck(a->nonew, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
1936d4002b98SHong Zhang
1937d4002b98SHong Zhang /* allocate space for values if not already there */
1938aa624791SPierre Jolivet if (!a->saved_values) PetscCall(PetscMalloc1(a->sliidx[a->totalslices] + 1, &a->saved_values));
1939d4002b98SHong Zhang
1940d4002b98SHong Zhang /* copy values over */
19419566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->saved_values, a->val, a->sliidx[a->totalslices]));
19423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1943d4002b98SHong Zhang }
1944d4002b98SHong Zhang
MatRetrieveValues_SeqSELL(Mat mat)1945ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_SeqSELL(Mat mat)
1946d71ae5a4SJacob Faibussowitsch {
1947d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data;
1948d4002b98SHong Zhang
1949d4002b98SHong Zhang PetscFunctionBegin;
195028b400f6SJacob Faibussowitsch PetscCheck(a->nonew, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
195128b400f6SJacob Faibussowitsch PetscCheck(a->saved_values, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call MatStoreValues(A);first");
19529566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->val, a->saved_values, a->sliidx[a->totalslices]));
19533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
1954d4002b98SHong Zhang }
1955d4002b98SHong Zhang
MatSeqSELLGetFillRatio_SeqSELL(Mat mat,PetscReal * ratio)1956ba38deedSJacob Faibussowitsch static PetscErrorCode MatSeqSELLGetFillRatio_SeqSELL(Mat mat, PetscReal *ratio)
195707e43b41SHong Zhang {
195807e43b41SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data;
195907e43b41SHong Zhang
196007e43b41SHong Zhang PetscFunctionBegin;
196107e43b41SHong Zhang if (a->totalslices && a->sliidx[a->totalslices]) {
196207e43b41SHong Zhang *ratio = (PetscReal)(a->sliidx[a->totalslices] - a->nz) / a->sliidx[a->totalslices];
196307e43b41SHong Zhang } else {
196407e43b41SHong Zhang *ratio = 0.0;
196507e43b41SHong Zhang }
196607e43b41SHong Zhang PetscFunctionReturn(PETSC_SUCCESS);
196707e43b41SHong Zhang }
196807e43b41SHong Zhang
MatSeqSELLGetMaxSliceWidth_SeqSELL(Mat mat,PetscInt * slicewidth)1969ba38deedSJacob Faibussowitsch static PetscErrorCode MatSeqSELLGetMaxSliceWidth_SeqSELL(Mat mat, PetscInt *slicewidth)
197007e43b41SHong Zhang {
197107e43b41SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data;
197207e43b41SHong Zhang PetscInt i, current_slicewidth;
197307e43b41SHong Zhang
197407e43b41SHong Zhang PetscFunctionBegin;
197507e43b41SHong Zhang *slicewidth = 0;
197607e43b41SHong Zhang for (i = 0; i < a->totalslices; i++) {
197707e43b41SHong Zhang current_slicewidth = (a->sliidx[i + 1] - a->sliidx[i]) / a->sliceheight;
197807e43b41SHong Zhang if (current_slicewidth > *slicewidth) *slicewidth = current_slicewidth;
197907e43b41SHong Zhang }
198007e43b41SHong Zhang PetscFunctionReturn(PETSC_SUCCESS);
198107e43b41SHong Zhang }
198207e43b41SHong Zhang
MatSeqSELLGetAvgSliceWidth_SeqSELL(Mat mat,PetscReal * slicewidth)1983ba38deedSJacob Faibussowitsch static PetscErrorCode MatSeqSELLGetAvgSliceWidth_SeqSELL(Mat mat, PetscReal *slicewidth)
198407e43b41SHong Zhang {
198507e43b41SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data;
198607e43b41SHong Zhang
198707e43b41SHong Zhang PetscFunctionBegin;
198807e43b41SHong Zhang *slicewidth = 0;
1989ac530a7eSPierre Jolivet if (a->totalslices) *slicewidth = (PetscReal)a->sliidx[a->totalslices] / a->sliceheight / a->totalslices;
199007e43b41SHong Zhang PetscFunctionReturn(PETSC_SUCCESS);
199107e43b41SHong Zhang }
199207e43b41SHong Zhang
MatSeqSELLGetVarSliceSize_SeqSELL(Mat mat,PetscReal * variance)1993ba38deedSJacob Faibussowitsch static PetscErrorCode MatSeqSELLGetVarSliceSize_SeqSELL(Mat mat, PetscReal *variance)
1994b921024eSHong Zhang {
1995b921024eSHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)mat->data;
1996b921024eSHong Zhang PetscReal mean;
1997b921024eSHong Zhang PetscInt i, totalslices = a->totalslices, *sliidx = a->sliidx;
1998b921024eSHong Zhang
1999b921024eSHong Zhang PetscFunctionBegin;
2000b921024eSHong Zhang *variance = 0;
2001b921024eSHong Zhang if (totalslices) {
2002b921024eSHong Zhang mean = (PetscReal)sliidx[totalslices] / totalslices;
2003ac530a7eSPierre Jolivet for (i = 1; i <= totalslices; i++) *variance += ((PetscReal)(sliidx[i] - sliidx[i - 1]) - mean) * ((PetscReal)(sliidx[i] - sliidx[i - 1]) - mean) / totalslices;
2004b921024eSHong Zhang }
2005b921024eSHong Zhang PetscFunctionReturn(PETSC_SUCCESS);
2006b921024eSHong Zhang }
2007b921024eSHong Zhang
MatSeqSELLSetSliceHeight_SeqSELL(Mat A,PetscInt sliceheight)2008ba38deedSJacob Faibussowitsch static PetscErrorCode MatSeqSELLSetSliceHeight_SeqSELL(Mat A, PetscInt sliceheight)
200907e43b41SHong Zhang {
201007e43b41SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
201107e43b41SHong Zhang
201207e43b41SHong Zhang PetscFunctionBegin;
201307e43b41SHong Zhang if (A->preallocated) PetscFunctionReturn(PETSC_SUCCESS);
201407e43b41SHong Zhang PetscCheck(a->sliceheight <= 0 || a->sliceheight == sliceheight, PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot change slice height %" PetscInt_FMT " to %" PetscInt_FMT, a->sliceheight, sliceheight);
201507e43b41SHong Zhang a->sliceheight = sliceheight;
2016773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
2017773bf0f6SHong Zhang PetscCheck(PetscMax(DEVICE_MEM_ALIGN, sliceheight) % PetscMin(DEVICE_MEM_ALIGN, sliceheight) == 0, PETSC_COMM_SELF, PETSC_ERR_SUP, "The slice height is not compatible with DEVICE_MEM_ALIGN (one must be divisible by the other) %" PetscInt_FMT, sliceheight);
20184e58db63SHong Zhang #endif
201907e43b41SHong Zhang PetscFunctionReturn(PETSC_SUCCESS);
202007e43b41SHong Zhang }
202107e43b41SHong Zhang
2022cc4c1da9SBarry Smith /*@
202307e43b41SHong Zhang MatSeqSELLGetFillRatio - returns a ratio that indicates the irregularity of the matrix.
202407e43b41SHong Zhang
202507e43b41SHong Zhang Not Collective
202607e43b41SHong Zhang
202707e43b41SHong Zhang Input Parameter:
202807e43b41SHong Zhang . A - a MATSEQSELL matrix
202907e43b41SHong Zhang
203007e43b41SHong Zhang Output Parameter:
203107e43b41SHong Zhang . ratio - ratio of number of padded zeros to number of allocated elements
203207e43b41SHong Zhang
203307e43b41SHong Zhang Level: intermediate
20342920cce0SJacob Faibussowitsch
20352920cce0SJacob Faibussowitsch .seealso: `MATSEQSELL`, `MatSeqSELLGetAvgSliceWidth()`
203607e43b41SHong Zhang @*/
MatSeqSELLGetFillRatio(Mat A,PetscReal * ratio)203707e43b41SHong Zhang PetscErrorCode MatSeqSELLGetFillRatio(Mat A, PetscReal *ratio)
203807e43b41SHong Zhang {
203907e43b41SHong Zhang PetscFunctionBegin;
204007e43b41SHong Zhang PetscUseMethod(A, "MatSeqSELLGetFillRatio_C", (Mat, PetscReal *), (A, ratio));
204107e43b41SHong Zhang PetscFunctionReturn(PETSC_SUCCESS);
204207e43b41SHong Zhang }
204307e43b41SHong Zhang
2044cc4c1da9SBarry Smith /*@
204507e43b41SHong Zhang MatSeqSELLGetMaxSliceWidth - returns the maximum slice width.
204607e43b41SHong Zhang
204707e43b41SHong Zhang Not Collective
204807e43b41SHong Zhang
204907e43b41SHong Zhang Input Parameter:
205007e43b41SHong Zhang . A - a MATSEQSELL matrix
205107e43b41SHong Zhang
205207e43b41SHong Zhang Output Parameter:
205307e43b41SHong Zhang . slicewidth - maximum slice width
205407e43b41SHong Zhang
205507e43b41SHong Zhang Level: intermediate
20562920cce0SJacob Faibussowitsch
20572920cce0SJacob Faibussowitsch .seealso: `MATSEQSELL`, `MatSeqSELLGetAvgSliceWidth()`
205807e43b41SHong Zhang @*/
MatSeqSELLGetMaxSliceWidth(Mat A,PetscInt * slicewidth)205907e43b41SHong Zhang PetscErrorCode MatSeqSELLGetMaxSliceWidth(Mat A, PetscInt *slicewidth)
206007e43b41SHong Zhang {
206107e43b41SHong Zhang PetscFunctionBegin;
206207e43b41SHong Zhang PetscUseMethod(A, "MatSeqSELLGetMaxSliceWidth_C", (Mat, PetscInt *), (A, slicewidth));
206307e43b41SHong Zhang PetscFunctionReturn(PETSC_SUCCESS);
206407e43b41SHong Zhang }
206507e43b41SHong Zhang
2066cc4c1da9SBarry Smith /*@
206707e43b41SHong Zhang MatSeqSELLGetAvgSliceWidth - returns the average slice width.
206807e43b41SHong Zhang
206907e43b41SHong Zhang Not Collective
207007e43b41SHong Zhang
207107e43b41SHong Zhang Input Parameter:
207207e43b41SHong Zhang . A - a MATSEQSELL matrix
207307e43b41SHong Zhang
207407e43b41SHong Zhang Output Parameter:
207507e43b41SHong Zhang . slicewidth - average slice width
207607e43b41SHong Zhang
207707e43b41SHong Zhang Level: intermediate
20782920cce0SJacob Faibussowitsch
20792920cce0SJacob Faibussowitsch .seealso: `MATSEQSELL`, `MatSeqSELLGetMaxSliceWidth()`
208007e43b41SHong Zhang @*/
MatSeqSELLGetAvgSliceWidth(Mat A,PetscReal * slicewidth)208107e43b41SHong Zhang PetscErrorCode MatSeqSELLGetAvgSliceWidth(Mat A, PetscReal *slicewidth)
208207e43b41SHong Zhang {
208307e43b41SHong Zhang PetscFunctionBegin;
208407e43b41SHong Zhang PetscUseMethod(A, "MatSeqSELLGetAvgSliceWidth_C", (Mat, PetscReal *), (A, slicewidth));
208507e43b41SHong Zhang PetscFunctionReturn(PETSC_SUCCESS);
208607e43b41SHong Zhang }
208707e43b41SHong Zhang
2088cc4c1da9SBarry Smith /*@
208907e43b41SHong Zhang MatSeqSELLSetSliceHeight - sets the slice height.
209007e43b41SHong Zhang
209107e43b41SHong Zhang Not Collective
209207e43b41SHong Zhang
209307e43b41SHong Zhang Input Parameters:
209407e43b41SHong Zhang + A - a MATSEQSELL matrix
209507e43b41SHong Zhang - sliceheight - slice height
209607e43b41SHong Zhang
209707e43b41SHong Zhang Notes:
209807e43b41SHong Zhang You cannot change the slice height once it have been set.
209907e43b41SHong Zhang
210007e43b41SHong Zhang The slice height must be set before MatSetUp() or MatXXXSetPreallocation() is called.
210107e43b41SHong Zhang
210207e43b41SHong Zhang Level: intermediate
21032920cce0SJacob Faibussowitsch
21042920cce0SJacob Faibussowitsch .seealso: `MATSEQSELL`, `MatSeqSELLGetVarSliceSize()`
210507e43b41SHong Zhang @*/
MatSeqSELLSetSliceHeight(Mat A,PetscInt sliceheight)210607e43b41SHong Zhang PetscErrorCode MatSeqSELLSetSliceHeight(Mat A, PetscInt sliceheight)
210707e43b41SHong Zhang {
210807e43b41SHong Zhang PetscFunctionBegin;
210907e43b41SHong Zhang PetscUseMethod(A, "MatSeqSELLSetSliceHeight_C", (Mat, PetscInt), (A, sliceheight));
211007e43b41SHong Zhang PetscFunctionReturn(PETSC_SUCCESS);
211107e43b41SHong Zhang }
211207e43b41SHong Zhang
2113cc4c1da9SBarry Smith /*@
211407e43b41SHong Zhang MatSeqSELLGetVarSliceSize - returns the variance of the slice size.
211507e43b41SHong Zhang
211607e43b41SHong Zhang Not Collective
211707e43b41SHong Zhang
211807e43b41SHong Zhang Input Parameter:
211907e43b41SHong Zhang . A - a MATSEQSELL matrix
212007e43b41SHong Zhang
212107e43b41SHong Zhang Output Parameter:
212207e43b41SHong Zhang . variance - variance of the slice size
212307e43b41SHong Zhang
212407e43b41SHong Zhang Level: intermediate
21252920cce0SJacob Faibussowitsch
21262920cce0SJacob Faibussowitsch .seealso: `MATSEQSELL`, `MatSeqSELLSetSliceHeight()`
212707e43b41SHong Zhang @*/
MatSeqSELLGetVarSliceSize(Mat A,PetscReal * variance)212807e43b41SHong Zhang PetscErrorCode MatSeqSELLGetVarSliceSize(Mat A, PetscReal *variance)
212907e43b41SHong Zhang {
213007e43b41SHong Zhang PetscFunctionBegin;
213107e43b41SHong Zhang PetscUseMethod(A, "MatSeqSELLGetVarSliceSize_C", (Mat, PetscReal *), (A, variance));
213207e43b41SHong Zhang PetscFunctionReturn(PETSC_SUCCESS);
213307e43b41SHong Zhang }
213407e43b41SHong Zhang
21352d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA)
21362d1451d4SHong Zhang PETSC_EXTERN PetscErrorCode MatConvert_SeqSELL_SeqSELLCUDA(Mat);
21372d1451d4SHong Zhang #endif
2138773bf0f6SHong Zhang #if defined(PETSC_HAVE_HIP)
2139773bf0f6SHong Zhang PETSC_EXTERN PetscErrorCode MatConvert_SeqSELL_SeqSELLHIP(Mat);
2140773bf0f6SHong Zhang #endif
21412d1451d4SHong Zhang
MatCreate_SeqSELL(Mat B)2142d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_SeqSELL(Mat B)
2143d71ae5a4SJacob Faibussowitsch {
2144d4002b98SHong Zhang Mat_SeqSELL *b;
2145d4002b98SHong Zhang PetscMPIInt size;
2146d4002b98SHong Zhang
2147d4002b98SHong Zhang PetscFunctionBegin;
21489566063dSJacob Faibussowitsch PetscCall(PetscCitationsRegister(citation, &cited));
21499566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
215008401ef6SPierre Jolivet PetscCheck(size <= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Comm must be of size 1");
2151d4002b98SHong Zhang
21524dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b));
2153d4002b98SHong Zhang
2154d4002b98SHong Zhang B->data = (void *)b;
2155aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values;
2156d4002b98SHong Zhang
2157f4259b30SLisandro Dalcin b->row = NULL;
2158f4259b30SLisandro Dalcin b->col = NULL;
2159f4259b30SLisandro Dalcin b->icol = NULL;
2160d4002b98SHong Zhang b->reallocs = 0;
2161d4002b98SHong Zhang b->ignorezeroentries = PETSC_FALSE;
2162d4002b98SHong Zhang b->roworiented = PETSC_TRUE;
2163d4002b98SHong Zhang b->nonew = 0;
2164f4259b30SLisandro Dalcin b->diag = NULL;
2165f4259b30SLisandro Dalcin b->solve_work = NULL;
2166f4259b30SLisandro Dalcin B->spptr = NULL;
2167f4259b30SLisandro Dalcin b->saved_values = NULL;
2168f4259b30SLisandro Dalcin b->idiag = NULL;
2169f4259b30SLisandro Dalcin b->mdiag = NULL;
2170f4259b30SLisandro Dalcin b->ssor_work = NULL;
2171d4002b98SHong Zhang b->omega = 1.0;
2172d4002b98SHong Zhang b->fshift = 0.0;
2173d4002b98SHong Zhang b->keepnonzeropattern = PETSC_FALSE;
217407e43b41SHong Zhang b->sliceheight = 0;
2175d4002b98SHong Zhang
21769566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATSEQSELL));
21779566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLGetArray_C", MatSeqSELLGetArray_SeqSELL));
21789566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLRestoreArray_C", MatSeqSELLRestoreArray_SeqSELL));
21799566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_SeqSELL));
21809566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_SeqSELL));
21819566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLSetPreallocation_C", MatSeqSELLSetPreallocation_SeqSELL));
2182b5917f1bSHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqsell_seqaij_C", MatConvert_SeqSELL_SeqAIJ));
21832d1451d4SHong Zhang #if defined(PETSC_HAVE_CUDA)
2184b5917f1bSHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqsell_seqsellcuda_C", MatConvert_SeqSELL_SeqSELLCUDA));
21852d1451d4SHong Zhang #endif
2186773bf0f6SHong Zhang #if defined(PETSC_HAVE_HIP)
2187773bf0f6SHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_seqsell_seqsellhip_C", MatConvert_SeqSELL_SeqSELLHIP));
2188773bf0f6SHong Zhang #endif
218907e43b41SHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLGetFillRatio_C", MatSeqSELLGetFillRatio_SeqSELL));
219007e43b41SHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLGetMaxSliceWidth_C", MatSeqSELLGetMaxSliceWidth_SeqSELL));
219107e43b41SHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLGetAvgSliceWidth_C", MatSeqSELLGetAvgSliceWidth_SeqSELL));
2192b921024eSHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLGetVarSliceSize_C", MatSeqSELLGetVarSliceSize_SeqSELL));
219307e43b41SHong Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSeqSELLSetSliceHeight_C", MatSeqSELLSetSliceHeight_SeqSELL));
219407e43b41SHong Zhang
219507e43b41SHong Zhang PetscObjectOptionsBegin((PetscObject)B);
219607e43b41SHong Zhang {
219707e43b41SHong Zhang PetscInt newsh = -1;
219807e43b41SHong Zhang PetscBool flg;
2199773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
220090d2215bSHong Zhang PetscInt chunksize = 0;
220190d2215bSHong Zhang #endif
220207e43b41SHong Zhang
220307e43b41SHong Zhang PetscCall(PetscOptionsInt("-mat_sell_slice_height", "Set the slice height used to store SELL matrix", "MatSELLSetSliceHeight", newsh, &newsh, &flg));
22043a7d0413SPierre Jolivet if (flg) PetscCall(MatSeqSELLSetSliceHeight(B, newsh));
2205773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
2206773bf0f6SHong Zhang PetscCall(PetscOptionsInt("-mat_sell_chunk_size", "Set the chunksize for load-balanced CUDA/HIP kernels. Choices include 64,128,256,512,1024", NULL, chunksize, &chunksize, &flg));
220790d2215bSHong Zhang if (flg) {
220890d2215bSHong Zhang PetscCheck(chunksize >= 64 && chunksize <= 1024 && chunksize % 64 == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "chunksize must be a number in {64,128,256,512,1024}: value %" PetscInt_FMT, chunksize);
220990d2215bSHong Zhang b->chunksize = chunksize;
221090d2215bSHong Zhang }
221190d2215bSHong Zhang #endif
221207e43b41SHong Zhang }
221307e43b41SHong Zhang PetscOptionsEnd();
22143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2215d4002b98SHong Zhang }
2216d4002b98SHong Zhang
2217d4002b98SHong Zhang /*
2218d4002b98SHong Zhang Given a matrix generated with MatGetFactor() duplicates all the information in A into B
2219d4002b98SHong Zhang */
MatDuplicateNoCreate_SeqSELL(Mat C,Mat A,MatDuplicateOption cpvalues,PetscBool mallocmatspace)2220ba38deedSJacob Faibussowitsch static PetscErrorCode MatDuplicateNoCreate_SeqSELL(Mat C, Mat A, MatDuplicateOption cpvalues, PetscBool mallocmatspace)
2221d71ae5a4SJacob Faibussowitsch {
2222ed73aabaSBarry Smith Mat_SeqSELL *c = (Mat_SeqSELL *)C->data, *a = (Mat_SeqSELL *)A->data;
2223d4002b98SHong Zhang PetscInt i, m = A->rmap->n;
2224d4002b98SHong Zhang PetscInt totalslices = a->totalslices;
2225d4002b98SHong Zhang
2226d4002b98SHong Zhang PetscFunctionBegin;
2227d4002b98SHong Zhang C->factortype = A->factortype;
2228f4259b30SLisandro Dalcin c->row = NULL;
2229f4259b30SLisandro Dalcin c->col = NULL;
2230f4259b30SLisandro Dalcin c->icol = NULL;
2231d4002b98SHong Zhang c->reallocs = 0;
2232d4002b98SHong Zhang C->assembled = PETSC_TRUE;
2233d4002b98SHong Zhang
22349566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->rmap, &C->rmap));
22359566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->cmap, &C->cmap));
2236d4002b98SHong Zhang
2237773bf0f6SHong Zhang c->sliceheight = a->sliceheight;
2238773bf0f6SHong Zhang PetscCall(PetscMalloc1(c->sliceheight * totalslices, &c->rlen));
22399566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(totalslices + 1, &c->sliidx));
2240d4002b98SHong Zhang
2241d4002b98SHong Zhang for (i = 0; i < m; i++) c->rlen[i] = a->rlen[i];
2242d4002b98SHong Zhang for (i = 0; i < totalslices + 1; i++) c->sliidx[i] = a->sliidx[i];
2243d4002b98SHong Zhang
2244d4002b98SHong Zhang /* allocate the matrix space */
2245d4002b98SHong Zhang if (mallocmatspace) {
22469566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(a->maxallocmat, &c->val, a->maxallocmat, &c->colidx));
2247d4002b98SHong Zhang
2248d4002b98SHong Zhang c->singlemalloc = PETSC_TRUE;
2249d4002b98SHong Zhang
2250d4002b98SHong Zhang if (m > 0) {
22519566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(c->colidx, a->colidx, a->maxallocmat));
2252d4002b98SHong Zhang if (cpvalues == MAT_COPY_VALUES) {
22539566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(c->val, a->val, a->maxallocmat));
2254d4002b98SHong Zhang } else {
22559566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(c->val, a->maxallocmat));
2256d4002b98SHong Zhang }
2257d4002b98SHong Zhang }
2258d4002b98SHong Zhang }
2259d4002b98SHong Zhang
2260d4002b98SHong Zhang c->ignorezeroentries = a->ignorezeroentries;
2261d4002b98SHong Zhang c->roworiented = a->roworiented;
2262d4002b98SHong Zhang c->nonew = a->nonew;
2263f4259b30SLisandro Dalcin c->solve_work = NULL;
2264f4259b30SLisandro Dalcin c->saved_values = NULL;
2265f4259b30SLisandro Dalcin c->idiag = NULL;
2266f4259b30SLisandro Dalcin c->ssor_work = NULL;
2267d4002b98SHong Zhang c->keepnonzeropattern = a->keepnonzeropattern;
2268d4002b98SHong Zhang c->free_val = PETSC_TRUE;
2269d4002b98SHong Zhang c->free_colidx = PETSC_TRUE;
2270d4002b98SHong Zhang
2271d4002b98SHong Zhang c->maxallocmat = a->maxallocmat;
2272d4002b98SHong Zhang c->maxallocrow = a->maxallocrow;
2273d4002b98SHong Zhang c->rlenmax = a->rlenmax;
2274d4002b98SHong Zhang c->nz = a->nz;
2275d4002b98SHong Zhang C->preallocated = PETSC_TRUE;
2276d4002b98SHong Zhang
2277d4002b98SHong Zhang c->nonzerorowcnt = a->nonzerorowcnt;
2278d4002b98SHong Zhang C->nonzerostate = A->nonzerostate;
2279d4002b98SHong Zhang
22809566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)A)->qlist, &((PetscObject)C)->qlist));
22813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2282d4002b98SHong Zhang }
2283d4002b98SHong Zhang
MatDuplicate_SeqSELL(Mat A,MatDuplicateOption cpvalues,Mat * B)2284d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_SeqSELL(Mat A, MatDuplicateOption cpvalues, Mat *B)
2285d71ae5a4SJacob Faibussowitsch {
2286d4002b98SHong Zhang PetscFunctionBegin;
22879566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), B));
22889566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*B, A->rmap->n, A->cmap->n, A->rmap->n, A->cmap->n));
228948a46eb9SPierre Jolivet if (!(A->rmap->n % A->rmap->bs) && !(A->cmap->n % A->cmap->bs)) PetscCall(MatSetBlockSizesFromMats(*B, A, A));
22909566063dSJacob Faibussowitsch PetscCall(MatSetType(*B, ((PetscObject)A)->type_name));
22919566063dSJacob Faibussowitsch PetscCall(MatDuplicateNoCreate_SeqSELL(*B, A, cpvalues, PETSC_TRUE));
22923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2293d4002b98SHong Zhang }
2294d4002b98SHong Zhang
2295ed73aabaSBarry Smith /*MC
2296ed73aabaSBarry Smith MATSEQSELL - MATSEQSELL = "seqsell" - A matrix type to be used for sequential sparse matrices,
22971d27aa22SBarry Smith based on the sliced Ellpack format, {cite}`zhangellpack2018`
2298ed73aabaSBarry Smith
229920f4b53cSBarry Smith Options Database Key:
230011a5261eSBarry Smith . -mat_type seqsell - sets the matrix type to "`MATSEQELL` during a call to `MatSetFromOptions()`
2301ed73aabaSBarry Smith
2302ed73aabaSBarry Smith Level: beginner
2303ed73aabaSBarry Smith
230494764886SPierre Jolivet .seealso: `Mat`, `MatCreateSeqSELL()`, `MATSELL`, `MATMPISELL`, `MATSEQAIJ`, `MATAIJ`, `MATMPIAIJ`
2305ed73aabaSBarry Smith M*/
2306ed73aabaSBarry Smith
2307ed73aabaSBarry Smith /*MC
23081d27aa22SBarry Smith MATSELL - MATSELL = "sell" - A matrix type to be used for sparse matrices, {cite}`zhangellpack2018`
2309ed73aabaSBarry Smith
231011a5261eSBarry Smith This matrix type is identical to `MATSEQSELL` when constructed with a single process communicator,
231111a5261eSBarry Smith and `MATMPISELL` otherwise. As a result, for single process communicators,
231211a5261eSBarry Smith `MatSeqSELLSetPreallocation()` is supported, and similarly `MatMPISELLSetPreallocation()` is supported
2313ed73aabaSBarry Smith for communicators controlling multiple processes. It is recommended that you call both of
2314ed73aabaSBarry Smith the above preallocation routines for simplicity.
2315ed73aabaSBarry Smith
231620f4b53cSBarry Smith Options Database Key:
2317ed73aabaSBarry Smith . -mat_type sell - sets the matrix type to "sell" during a call to MatSetFromOptions()
2318ed73aabaSBarry Smith
2319ed73aabaSBarry Smith Level: beginner
2320ed73aabaSBarry Smith
2321ed73aabaSBarry Smith Notes:
23227de69702SBarry Smith This format is only supported for real scalars, double precision, and 32-bit indices (the defaults).
2323ed73aabaSBarry Smith
2324ed73aabaSBarry Smith It can provide better performance on Intel and AMD processes with AVX2 or AVX512 support for matrices that have a similar number of
2325ed73aabaSBarry Smith non-zeros in contiguous groups of rows. However if the computation is memory bandwidth limited it may not provide much improvement.
2326ed73aabaSBarry Smith
2327ed73aabaSBarry Smith Developer Notes:
2328ed73aabaSBarry Smith On Intel (and AMD) systems some of the matrix operations use SIMD (AVX) instructions to achieve higher performance.
2329ed73aabaSBarry Smith
2330ed73aabaSBarry Smith The sparse matrix format is as follows. For simplicity we assume a slice size of 2, it is actually 8
2331ed73aabaSBarry Smith .vb
2332ed73aabaSBarry Smith (2 0 3 4)
2333ed73aabaSBarry Smith Consider the matrix A = (5 0 6 0)
2334ed73aabaSBarry Smith (0 0 7 8)
2335ed73aabaSBarry Smith (0 0 9 9)
2336ed73aabaSBarry Smith
2337ed73aabaSBarry Smith symbolically the Ellpack format can be written as
2338ed73aabaSBarry Smith
2339ed73aabaSBarry Smith (2 3 4 |) (0 2 3 |)
2340ed73aabaSBarry Smith v = (5 6 0 |) colidx = (0 2 2 |)
2341ed73aabaSBarry Smith -------- ---------
2342ed73aabaSBarry Smith (7 8 |) (2 3 |)
2343ed73aabaSBarry Smith (9 9 |) (2 3 |)
2344ed73aabaSBarry Smith
2345ed73aabaSBarry Smith The data for 2 contiguous rows of the matrix are stored together (in column-major format) (with any left-over rows handled as a special case).
2346ed73aabaSBarry Smith Any of the rows in a slice fewer columns than the rest of the slice (row 1 above) are padded with a previous valid column in their "extra" colidx[] locations and
2347ed73aabaSBarry Smith zeros in their "extra" v locations so that the matrix operations do not need special code to handle different length rows within the 2 rows in a slice.
2348ed73aabaSBarry Smith
2349ed73aabaSBarry Smith The one-dimensional representation of v used in the code is (2 5 3 6 4 0 7 9 8 9) and for colidx is (0 0 2 2 3 2 2 2 3 3)
2350ed73aabaSBarry Smith
2351ed73aabaSBarry Smith .ve
2352ed73aabaSBarry Smith
23531d27aa22SBarry Smith See `MatMult_SeqSELL()` for how this format is used with the SIMD operations to achieve high performance.
2354ed73aabaSBarry Smith
235594764886SPierre Jolivet .seealso: `Mat`, `MatCreateSeqSELL()`, `MatCreateSeqAIJ()`, `MatCreateSELL()`, `MATSEQSELL`, `MATMPISELL`, `MATSEQAIJ`, `MATMPIAIJ`, `MATAIJ`
2356ed73aabaSBarry Smith M*/
2357ed73aabaSBarry Smith
23585d83a8b1SBarry Smith /*@
235911a5261eSBarry Smith MatCreateSeqSELL - Creates a sparse matrix in `MATSEQSELL` format.
2360d4002b98SHong Zhang
23612ef1f0ffSBarry Smith Collective
2362d4002b98SHong Zhang
2363d4002b98SHong Zhang Input Parameters:
236411a5261eSBarry Smith + comm - MPI communicator, set to `PETSC_COMM_SELF`
2365d4002b98SHong Zhang . m - number of rows
2366d4002b98SHong Zhang . n - number of columns
236720f4b53cSBarry Smith . rlenmax - maximum number of nonzeros in a row, ignored if `rlen` is provided
236820f4b53cSBarry Smith - rlen - array containing the number of nonzeros in the various rows (possibly different for each row) or NULL
2369d4002b98SHong Zhang
2370d4002b98SHong Zhang Output Parameter:
2371d4002b98SHong Zhang . A - the matrix
2372d4002b98SHong Zhang
237320f4b53cSBarry Smith Level: intermediate
237420f4b53cSBarry Smith
237520f4b53cSBarry Smith Notes:
237611a5261eSBarry Smith It is recommended that one use the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
2377f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly.
237811a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqSELLSetPreallocation()`]
2379d4002b98SHong Zhang
238020f4b53cSBarry Smith Specify the preallocated storage with either `rlenmax` or `rlen` (not both).
238120f4b53cSBarry Smith Set `rlenmax` = `PETSC_DEFAULT` and `rlen` = `NULL` for PETSc to control dynamic memory
238220f4b53cSBarry Smith allocation.
2383d4002b98SHong Zhang
2384fe59aa6dSJacob Faibussowitsch .seealso: `Mat`, `MATSEQSELL`, `MatCreate()`, `MatCreateSELL()`, `MatSetValues()`, `MatSeqSELLSetPreallocation()`, `MATSELL`, `MATMPISELL`
2385d4002b98SHong Zhang @*/
MatCreateSeqSELL(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt rlenmax,const PetscInt rlen[],Mat * A)238620f4b53cSBarry Smith PetscErrorCode MatCreateSeqSELL(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt rlenmax, const PetscInt rlen[], Mat *A)
2387d71ae5a4SJacob Faibussowitsch {
2388d4002b98SHong Zhang PetscFunctionBegin;
23899566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A));
23909566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, m, n));
23919566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQSELL));
239220f4b53cSBarry Smith PetscCall(MatSeqSELLSetPreallocation_SeqSELL(*A, rlenmax, rlen));
23933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2394d4002b98SHong Zhang }
2395d4002b98SHong Zhang
MatEqual_SeqSELL(Mat A,Mat B,PetscBool * flg)2396d71ae5a4SJacob Faibussowitsch PetscErrorCode MatEqual_SeqSELL(Mat A, Mat B, PetscBool *flg)
2397d71ae5a4SJacob Faibussowitsch {
2398d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data, *b = (Mat_SeqSELL *)B->data;
2399d4002b98SHong Zhang PetscInt totalslices = a->totalslices;
2400d4002b98SHong Zhang
2401d4002b98SHong Zhang PetscFunctionBegin;
2402d4002b98SHong Zhang /* If the matrix dimensions are not equal,or no of nonzeros */
2403d4002b98SHong Zhang if ((A->rmap->n != B->rmap->n) || (A->cmap->n != B->cmap->n) || (a->nz != b->nz) || (a->rlenmax != b->rlenmax)) {
2404d4002b98SHong Zhang *flg = PETSC_FALSE;
24053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2406d4002b98SHong Zhang }
2407d4002b98SHong Zhang /* if the a->colidx are the same */
24089566063dSJacob Faibussowitsch PetscCall(PetscArraycmp(a->colidx, b->colidx, a->sliidx[totalslices], flg));
24093ba16761SJacob Faibussowitsch if (!*flg) PetscFunctionReturn(PETSC_SUCCESS);
2410d4002b98SHong Zhang /* if a->val are the same */
24119566063dSJacob Faibussowitsch PetscCall(PetscArraycmp(a->val, b->val, a->sliidx[totalslices], flg));
24123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2413d4002b98SHong Zhang }
2414d4002b98SHong Zhang
MatConjugate_SeqSELL(Mat A)2415d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConjugate_SeqSELL(Mat A)
2416d71ae5a4SJacob Faibussowitsch {
2417d4002b98SHong Zhang Mat_SeqSELL *a = (Mat_SeqSELL *)A->data;
2418d4002b98SHong Zhang PetscScalar *val = a->val;
2419d4002b98SHong Zhang
2420d4002b98SHong Zhang PetscFunctionBegin;
2421*65d0d443SPierre Jolivet for (PetscInt i = 0; i < a->sliidx[a->totalslices]; i++) val[i] = PetscConj(val[i]);
2422773bf0f6SHong Zhang #if defined(PETSC_HAVE_CUPM)
24232d1451d4SHong Zhang if (A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) A->offloadmask = PETSC_OFFLOAD_CPU;
24242d1451d4SHong Zhang #endif
24253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS);
2426d4002b98SHong Zhang }
2427