xref: /petsc/src/mat/interface/matrix.c (revision 562efe2ef922487c6beae96ba39e19afd4eefbe6)
1 /*
2    This is where the abstract matrix operations are defined
3    Portions of this code are under:
4    Copyright (c) 2022 Advanced Micro Devices, Inc. All rights reserved.
5 */
6 
7 #include <petsc/private/matimpl.h> /*I "petscmat.h" I*/
8 #include <petsc/private/isimpl.h>
9 #include <petsc/private/vecimpl.h>
10 
11 /* Logging support */
12 PetscClassId MAT_CLASSID;
13 PetscClassId MAT_COLORING_CLASSID;
14 PetscClassId MAT_FDCOLORING_CLASSID;
15 PetscClassId MAT_TRANSPOSECOLORING_CLASSID;
16 
17 PetscLogEvent MAT_Mult, MAT_MultAdd, MAT_MultTranspose;
18 PetscLogEvent MAT_MultTransposeAdd, MAT_Solve, MAT_Solves, MAT_SolveAdd, MAT_SolveTranspose, MAT_MatSolve, MAT_MatTrSolve;
19 PetscLogEvent MAT_SolveTransposeAdd, MAT_SOR, MAT_ForwardSolve, MAT_BackwardSolve, MAT_LUFactor, MAT_LUFactorSymbolic;
20 PetscLogEvent MAT_LUFactorNumeric, MAT_CholeskyFactor, MAT_CholeskyFactorSymbolic, MAT_CholeskyFactorNumeric, MAT_ILUFactor;
21 PetscLogEvent MAT_ILUFactorSymbolic, MAT_ICCFactorSymbolic, MAT_Copy, MAT_Convert, MAT_Scale, MAT_AssemblyBegin;
22 PetscLogEvent MAT_QRFactorNumeric, MAT_QRFactorSymbolic, MAT_QRFactor;
23 PetscLogEvent MAT_AssemblyEnd, MAT_SetValues, MAT_GetValues, MAT_GetRow, MAT_GetRowIJ, MAT_CreateSubMats, MAT_GetOrdering, MAT_RedundantMat, MAT_GetSeqNonzeroStructure;
24 PetscLogEvent MAT_IncreaseOverlap, MAT_Partitioning, MAT_PartitioningND, MAT_Coarsen, MAT_ZeroEntries, MAT_Load, MAT_View, MAT_AXPY, MAT_FDColoringCreate;
25 PetscLogEvent MAT_FDColoringSetUp, MAT_FDColoringApply, MAT_Transpose, MAT_FDColoringFunction, MAT_CreateSubMat;
26 PetscLogEvent MAT_TransposeColoringCreate;
27 PetscLogEvent MAT_MatMult, MAT_MatMultSymbolic, MAT_MatMultNumeric;
28 PetscLogEvent MAT_PtAP, MAT_PtAPSymbolic, MAT_PtAPNumeric, MAT_RARt, MAT_RARtSymbolic, MAT_RARtNumeric;
29 PetscLogEvent MAT_MatTransposeMult, MAT_MatTransposeMultSymbolic, MAT_MatTransposeMultNumeric;
30 PetscLogEvent MAT_TransposeMatMult, MAT_TransposeMatMultSymbolic, MAT_TransposeMatMultNumeric;
31 PetscLogEvent MAT_MatMatMult, MAT_MatMatMultSymbolic, MAT_MatMatMultNumeric;
32 PetscLogEvent MAT_MultHermitianTranspose, MAT_MultHermitianTransposeAdd;
33 PetscLogEvent MAT_Getsymtransreduced, MAT_GetBrowsOfAcols;
34 PetscLogEvent MAT_GetBrowsOfAocols, MAT_Getlocalmat, MAT_Getlocalmatcondensed, MAT_Seqstompi, MAT_Seqstompinum, MAT_Seqstompisym;
35 PetscLogEvent MAT_GetMultiProcBlock;
36 PetscLogEvent MAT_CUSPARSECopyToGPU, MAT_CUSPARSECopyFromGPU, MAT_CUSPARSEGenerateTranspose, MAT_CUSPARSESolveAnalysis;
37 PetscLogEvent MAT_HIPSPARSECopyToGPU, MAT_HIPSPARSECopyFromGPU, MAT_HIPSPARSEGenerateTranspose, MAT_HIPSPARSESolveAnalysis;
38 PetscLogEvent MAT_PreallCOO, MAT_SetVCOO;
39 PetscLogEvent MAT_SetValuesBatch;
40 PetscLogEvent MAT_ViennaCLCopyToGPU;
41 PetscLogEvent MAT_CUDACopyToGPU;
42 PetscLogEvent MAT_DenseCopyToGPU, MAT_DenseCopyFromGPU;
43 PetscLogEvent MAT_Merge, MAT_Residual, MAT_SetRandom;
44 PetscLogEvent MAT_FactorFactS, MAT_FactorInvS;
45 PetscLogEvent MATCOLORING_Apply, MATCOLORING_Comm, MATCOLORING_Local, MATCOLORING_ISCreate, MATCOLORING_SetUp, MATCOLORING_Weights;
46 PetscLogEvent MAT_H2Opus_Build, MAT_H2Opus_Compress, MAT_H2Opus_Orthog, MAT_H2Opus_LR;
47 
48 const char *const MatFactorTypes[] = {"NONE", "LU", "CHOLESKY", "ILU", "ICC", "ILUDT", "QR", "MatFactorType", "MAT_FACTOR_", NULL};
49 
50 /*@
51   MatSetRandom - Sets all components of a matrix to random numbers.
52 
53   Logically Collective
54 
55   Input Parameters:
56 + x    - the matrix
57 - rctx - the `PetscRandom` object, formed by `PetscRandomCreate()`, or `NULL` and
58           it will create one internally.
59 
60   Example:
61 .vb
62      PetscRandomCreate(PETSC_COMM_WORLD,&rctx);
63      MatSetRandom(x,rctx);
64      PetscRandomDestroy(rctx);
65 .ve
66 
67   Level: intermediate
68 
69   Notes:
70   For sparse matrices that have been preallocated but not been assembled, it randomly selects appropriate locations,
71 
72   for sparse matrices that already have nonzero locations, it fills the locations with random numbers.
73 
74   It generates an error if used on unassembled sparse matrices that have not been preallocated.
75 
76 .seealso: [](ch_matrices), `Mat`, `PetscRandom`, `PetscRandomCreate()`, `MatZeroEntries()`, `MatSetValues()`, `PetscRandomDestroy()`
77 @*/
78 PetscErrorCode MatSetRandom(Mat x, PetscRandom rctx)
79 {
80   PetscRandom randObj = NULL;
81 
82   PetscFunctionBegin;
83   PetscValidHeaderSpecific(x, MAT_CLASSID, 1);
84   if (rctx) PetscValidHeaderSpecific(rctx, PETSC_RANDOM_CLASSID, 2);
85   PetscValidType(x, 1);
86   MatCheckPreallocated(x, 1);
87 
88   if (!rctx) {
89     MPI_Comm comm;
90     PetscCall(PetscObjectGetComm((PetscObject)x, &comm));
91     PetscCall(PetscRandomCreate(comm, &randObj));
92     PetscCall(PetscRandomSetType(randObj, x->defaultrandtype));
93     PetscCall(PetscRandomSetFromOptions(randObj));
94     rctx = randObj;
95   }
96   PetscCall(PetscLogEventBegin(MAT_SetRandom, x, rctx, 0, 0));
97   PetscUseTypeMethod(x, setrandom, rctx);
98   PetscCall(PetscLogEventEnd(MAT_SetRandom, x, rctx, 0, 0));
99 
100   PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY));
101   PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY));
102   PetscCall(PetscRandomDestroy(&randObj));
103   PetscFunctionReturn(PETSC_SUCCESS);
104 }
105 
106 /*@
107   MatFactorGetErrorZeroPivot - returns the pivot value that was determined to be zero and the row it occurred in
108 
109   Logically Collective
110 
111   Input Parameter:
112 . mat - the factored matrix
113 
114   Output Parameters:
115 + pivot - the pivot value computed
116 - row   - the row that the zero pivot occurred. This row value must be interpreted carefully due to row reorderings and which processes
117          the share the matrix
118 
119   Level: advanced
120 
121   Notes:
122   This routine does not work for factorizations done with external packages.
123 
124   This routine should only be called if `MatGetFactorError()` returns a value of `MAT_FACTOR_NUMERIC_ZEROPIVOT`
125 
126   This can also be called on non-factored matrices that come from, for example, matrices used in SOR.
127 
128 .seealso: [](ch_matrices), `Mat`, `MatZeroEntries()`, `MatFactor()`, `MatGetFactor()`,
129 `MatLUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`, `MatFactorClearError()`,
130 `MAT_FACTOR_NUMERIC_ZEROPIVOT`
131 @*/
132 PetscErrorCode MatFactorGetErrorZeroPivot(Mat mat, PetscReal *pivot, PetscInt *row)
133 {
134   PetscFunctionBegin;
135   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
136   PetscAssertPointer(pivot, 2);
137   PetscAssertPointer(row, 3);
138   *pivot = mat->factorerror_zeropivot_value;
139   *row   = mat->factorerror_zeropivot_row;
140   PetscFunctionReturn(PETSC_SUCCESS);
141 }
142 
143 /*@
144   MatFactorGetError - gets the error code from a factorization
145 
146   Logically Collective
147 
148   Input Parameter:
149 . mat - the factored matrix
150 
151   Output Parameter:
152 . err - the error code
153 
154   Level: advanced
155 
156   Note:
157   This can also be called on non-factored matrices that come from, for example, matrices used in SOR.
158 
159 .seealso: [](ch_matrices), `Mat`, `MatZeroEntries()`, `MatFactor()`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`,
160           `MatFactorClearError()`, `MatFactorGetErrorZeroPivot()`, `MatFactorError`
161 @*/
162 PetscErrorCode MatFactorGetError(Mat mat, MatFactorError *err)
163 {
164   PetscFunctionBegin;
165   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
166   PetscAssertPointer(err, 2);
167   *err = mat->factorerrortype;
168   PetscFunctionReturn(PETSC_SUCCESS);
169 }
170 
171 /*@
172   MatFactorClearError - clears the error code in a factorization
173 
174   Logically Collective
175 
176   Input Parameter:
177 . mat - the factored matrix
178 
179   Level: developer
180 
181   Note:
182   This can also be called on non-factored matrices that come from, for example, matrices used in SOR.
183 
184 .seealso: [](ch_matrices), `Mat`, `MatZeroEntries()`, `MatFactor()`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`, `MatFactorGetError()`, `MatFactorGetErrorZeroPivot()`,
185           `MatGetErrorCode()`, `MatFactorError`
186 @*/
187 PetscErrorCode MatFactorClearError(Mat mat)
188 {
189   PetscFunctionBegin;
190   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
191   mat->factorerrortype             = MAT_FACTOR_NOERROR;
192   mat->factorerror_zeropivot_value = 0.0;
193   mat->factorerror_zeropivot_row   = 0;
194   PetscFunctionReturn(PETSC_SUCCESS);
195 }
196 
197 PETSC_INTERN PetscErrorCode MatFindNonzeroRowsOrCols_Basic(Mat mat, PetscBool cols, PetscReal tol, IS *nonzero)
198 {
199   Vec                r, l;
200   const PetscScalar *al;
201   PetscInt           i, nz, gnz, N, n;
202 
203   PetscFunctionBegin;
204   PetscCall(MatCreateVecs(mat, &r, &l));
205   if (!cols) { /* nonzero rows */
206     PetscCall(MatGetSize(mat, &N, NULL));
207     PetscCall(MatGetLocalSize(mat, &n, NULL));
208     PetscCall(VecSet(l, 0.0));
209     PetscCall(VecSetRandom(r, NULL));
210     PetscCall(MatMult(mat, r, l));
211     PetscCall(VecGetArrayRead(l, &al));
212   } else { /* nonzero columns */
213     PetscCall(MatGetSize(mat, NULL, &N));
214     PetscCall(MatGetLocalSize(mat, NULL, &n));
215     PetscCall(VecSet(r, 0.0));
216     PetscCall(VecSetRandom(l, NULL));
217     PetscCall(MatMultTranspose(mat, l, r));
218     PetscCall(VecGetArrayRead(r, &al));
219   }
220   if (tol <= 0.0) {
221     for (i = 0, nz = 0; i < n; i++)
222       if (al[i] != 0.0) nz++;
223   } else {
224     for (i = 0, nz = 0; i < n; i++)
225       if (PetscAbsScalar(al[i]) > tol) nz++;
226   }
227   PetscCall(MPIU_Allreduce(&nz, &gnz, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)mat)));
228   if (gnz != N) {
229     PetscInt *nzr;
230     PetscCall(PetscMalloc1(nz, &nzr));
231     if (nz) {
232       if (tol < 0) {
233         for (i = 0, nz = 0; i < n; i++)
234           if (al[i] != 0.0) nzr[nz++] = i;
235       } else {
236         for (i = 0, nz = 0; i < n; i++)
237           if (PetscAbsScalar(al[i]) > tol) nzr[nz++] = i;
238       }
239     }
240     PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)mat), nz, nzr, PETSC_OWN_POINTER, nonzero));
241   } else *nonzero = NULL;
242   if (!cols) { /* nonzero rows */
243     PetscCall(VecRestoreArrayRead(l, &al));
244   } else {
245     PetscCall(VecRestoreArrayRead(r, &al));
246   }
247   PetscCall(VecDestroy(&l));
248   PetscCall(VecDestroy(&r));
249   PetscFunctionReturn(PETSC_SUCCESS);
250 }
251 
252 /*@
253   MatFindNonzeroRows - Locate all rows that are not completely zero in the matrix
254 
255   Input Parameter:
256 . mat - the matrix
257 
258   Output Parameter:
259 . keptrows - the rows that are not completely zero
260 
261   Level: intermediate
262 
263   Note:
264   `keptrows` is set to `NULL` if all rows are nonzero.
265 
266 .seealso: [](ch_matrices), `Mat`, `MatFindZeroRows()`
267  @*/
268 PetscErrorCode MatFindNonzeroRows(Mat mat, IS *keptrows)
269 {
270   PetscFunctionBegin;
271   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
272   PetscValidType(mat, 1);
273   PetscAssertPointer(keptrows, 2);
274   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
275   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
276   if (mat->ops->findnonzerorows) PetscUseTypeMethod(mat, findnonzerorows, keptrows);
277   else PetscCall(MatFindNonzeroRowsOrCols_Basic(mat, PETSC_FALSE, 0.0, keptrows));
278   PetscFunctionReturn(PETSC_SUCCESS);
279 }
280 
281 /*@
282   MatFindZeroRows - Locate all rows that are completely zero in the matrix
283 
284   Input Parameter:
285 . mat - the matrix
286 
287   Output Parameter:
288 . zerorows - the rows that are completely zero
289 
290   Level: intermediate
291 
292   Note:
293   `zerorows` is set to `NULL` if no rows are zero.
294 
295 .seealso: [](ch_matrices), `Mat`, `MatFindNonzeroRows()`
296  @*/
297 PetscErrorCode MatFindZeroRows(Mat mat, IS *zerorows)
298 {
299   IS       keptrows;
300   PetscInt m, n;
301 
302   PetscFunctionBegin;
303   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
304   PetscValidType(mat, 1);
305   PetscAssertPointer(zerorows, 2);
306   PetscCall(MatFindNonzeroRows(mat, &keptrows));
307   /* MatFindNonzeroRows sets keptrows to NULL if there are no zero rows.
308      In keeping with this convention, we set zerorows to NULL if there are no zero
309      rows. */
310   if (keptrows == NULL) {
311     *zerorows = NULL;
312   } else {
313     PetscCall(MatGetOwnershipRange(mat, &m, &n));
314     PetscCall(ISComplement(keptrows, m, n, zerorows));
315     PetscCall(ISDestroy(&keptrows));
316   }
317   PetscFunctionReturn(PETSC_SUCCESS);
318 }
319 
320 /*@
321   MatGetDiagonalBlock - Returns the part of the matrix associated with the on-process coupling
322 
323   Not Collective
324 
325   Input Parameter:
326 . A - the matrix
327 
328   Output Parameter:
329 . a - the diagonal part (which is a SEQUENTIAL matrix)
330 
331   Level: advanced
332 
333   Notes:
334   See `MatCreateAIJ()` for more information on the "diagonal part" of the matrix.
335 
336   Use caution, as the reference count on the returned matrix is not incremented and it is used as part of `A`'s normal operation.
337 
338 .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()`, `MATAIJ`, `MATBAIJ`, `MATSBAIJ`
339 @*/
340 PetscErrorCode MatGetDiagonalBlock(Mat A, Mat *a)
341 {
342   PetscFunctionBegin;
343   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
344   PetscValidType(A, 1);
345   PetscAssertPointer(a, 2);
346   PetscCheck(!A->factortype, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
347   if (A->ops->getdiagonalblock) PetscUseTypeMethod(A, getdiagonalblock, a);
348   else {
349     PetscMPIInt size;
350 
351     PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
352     PetscCheck(size == 1, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for parallel matrix type %s", ((PetscObject)A)->type_name);
353     *a = A;
354   }
355   PetscFunctionReturn(PETSC_SUCCESS);
356 }
357 
358 /*@
359   MatGetTrace - Gets the trace of a matrix. The sum of the diagonal entries.
360 
361   Collective
362 
363   Input Parameter:
364 . mat - the matrix
365 
366   Output Parameter:
367 . trace - the sum of the diagonal entries
368 
369   Level: advanced
370 
371 .seealso: [](ch_matrices), `Mat`
372 @*/
373 PetscErrorCode MatGetTrace(Mat mat, PetscScalar *trace)
374 {
375   Vec diag;
376 
377   PetscFunctionBegin;
378   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
379   PetscAssertPointer(trace, 2);
380   PetscCall(MatCreateVecs(mat, &diag, NULL));
381   PetscCall(MatGetDiagonal(mat, diag));
382   PetscCall(VecSum(diag, trace));
383   PetscCall(VecDestroy(&diag));
384   PetscFunctionReturn(PETSC_SUCCESS);
385 }
386 
387 /*@
388   MatRealPart - Zeros out the imaginary part of the matrix
389 
390   Logically Collective
391 
392   Input Parameter:
393 . mat - the matrix
394 
395   Level: advanced
396 
397 .seealso: [](ch_matrices), `Mat`, `MatImaginaryPart()`
398 @*/
399 PetscErrorCode MatRealPart(Mat mat)
400 {
401   PetscFunctionBegin;
402   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
403   PetscValidType(mat, 1);
404   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
405   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
406   MatCheckPreallocated(mat, 1);
407   PetscUseTypeMethod(mat, realpart);
408   PetscFunctionReturn(PETSC_SUCCESS);
409 }
410 
411 /*@C
412   MatGetGhosts - Get the global indices of all ghost nodes defined by the sparse matrix
413 
414   Collective
415 
416   Input Parameter:
417 . mat - the matrix
418 
419   Output Parameters:
420 + nghosts - number of ghosts (for `MATBAIJ` and `MATSBAIJ` matrices there is one ghost for each matrix block)
421 - ghosts  - the global indices of the ghost points
422 
423   Level: advanced
424 
425   Note:
426   `nghosts` and `ghosts` are suitable to pass into `VecCreateGhost()` or `VecCreateGhostBlock()`
427 
428 .seealso: [](ch_matrices), `Mat`, `VecCreateGhost()`, `VecCreateGhostBlock()`
429 @*/
430 PetscErrorCode MatGetGhosts(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[])
431 {
432   PetscFunctionBegin;
433   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
434   PetscValidType(mat, 1);
435   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
436   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
437   if (mat->ops->getghosts) PetscUseTypeMethod(mat, getghosts, nghosts, ghosts);
438   else {
439     if (nghosts) *nghosts = 0;
440     if (ghosts) *ghosts = NULL;
441   }
442   PetscFunctionReturn(PETSC_SUCCESS);
443 }
444 
445 /*@
446   MatImaginaryPart - Moves the imaginary part of the matrix to the real part and zeros the imaginary part
447 
448   Logically Collective
449 
450   Input Parameter:
451 . mat - the matrix
452 
453   Level: advanced
454 
455 .seealso: [](ch_matrices), `Mat`, `MatRealPart()`
456 @*/
457 PetscErrorCode MatImaginaryPart(Mat mat)
458 {
459   PetscFunctionBegin;
460   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
461   PetscValidType(mat, 1);
462   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
463   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
464   MatCheckPreallocated(mat, 1);
465   PetscUseTypeMethod(mat, imaginarypart);
466   PetscFunctionReturn(PETSC_SUCCESS);
467 }
468 
469 /*@
470   MatMissingDiagonal - Determine if sparse matrix is missing a diagonal entry (or block entry for `MATBAIJ` and `MATSBAIJ` matrices) in the nonzero structure
471 
472   Not Collective
473 
474   Input Parameter:
475 . mat - the matrix
476 
477   Output Parameters:
478 + missing - is any diagonal entry missing
479 - dd      - first diagonal entry that is missing (optional) on this process
480 
481   Level: advanced
482 
483   Note:
484   This does not return diagonal entries that are in the nonzero structure but happen to have a zero numerical value
485 
486 .seealso: [](ch_matrices), `Mat`
487 @*/
488 PetscErrorCode MatMissingDiagonal(Mat mat, PetscBool *missing, PetscInt *dd)
489 {
490   PetscFunctionBegin;
491   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
492   PetscValidType(mat, 1);
493   PetscAssertPointer(missing, 2);
494   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix %s", ((PetscObject)mat)->type_name);
495   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
496   PetscUseTypeMethod(mat, missingdiagonal, missing, dd);
497   PetscFunctionReturn(PETSC_SUCCESS);
498 }
499 
500 // PetscClangLinter pragma disable: -fdoc-section-header-unknown
501 /*@C
502   MatGetRow - Gets a row of a matrix.  You MUST call `MatRestoreRow()`
503   for each row that you get to ensure that your application does
504   not bleed memory.
505 
506   Not Collective
507 
508   Input Parameters:
509 + mat - the matrix
510 - row - the row to get
511 
512   Output Parameters:
513 + ncols - if not `NULL`, the number of nonzeros in `row`
514 . cols  - if not `NULL`, the column numbers
515 - vals  - if not `NULL`, the numerical values
516 
517   Level: advanced
518 
519   Notes:
520   This routine is provided for people who need to have direct access
521   to the structure of a matrix.  We hope that we provide enough
522   high-level matrix routines that few users will need it.
523 
524   `MatGetRow()` always returns 0-based column indices, regardless of
525   whether the internal representation is 0-based (default) or 1-based.
526 
527   For better efficiency, set `cols` and/or `vals` to `NULL` if you do
528   not wish to extract these quantities.
529 
530   The user can only examine the values extracted with `MatGetRow()`;
531   the values CANNOT be altered.  To change the matrix entries, one
532   must use `MatSetValues()`.
533 
534   You can only have one call to `MatGetRow()` outstanding for a particular
535   matrix at a time, per processor. `MatGetRow()` can only obtain rows
536   associated with the given processor, it cannot get rows from the
537   other processors; for that we suggest using `MatCreateSubMatrices()`, then
538   `MatGetRow()` on the submatrix. The row index passed to `MatGetRow()`
539   is in the global number of rows.
540 
541   Use `MatGetRowIJ()` and `MatRestoreRowIJ()` to access all the local indices of the sparse matrix.
542 
543   Use `MatSeqAIJGetArray()` and similar functions to access the numerical values for certain matrix types directly.
544 
545   Fortran Note:
546   The calling sequence is
547 .vb
548    MatGetRow(matrix,row,ncols,cols,values,ierr)
549          Mat     matrix (input)
550          integer row    (input)
551          integer ncols  (output)
552          integer cols(maxcols) (output)
553          double precision (or double complex) values(maxcols) output
554 .ve
555   where maxcols >= maximum nonzeros in any row of the matrix.
556 
557 .seealso: [](ch_matrices), `Mat`, `MatRestoreRow()`, `MatSetValues()`, `MatGetValues()`, `MatCreateSubMatrices()`, `MatGetDiagonal()`, `MatGetRowIJ()`, `MatRestoreRowIJ()`
558 @*/
559 PetscErrorCode MatGetRow(Mat mat, PetscInt row, PetscInt *ncols, const PetscInt *cols[], const PetscScalar *vals[])
560 {
561   PetscInt incols;
562 
563   PetscFunctionBegin;
564   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
565   PetscValidType(mat, 1);
566   PetscCheck(mat->assembled, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
567   PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
568   MatCheckPreallocated(mat, 1);
569   PetscCheck(row >= mat->rmap->rstart && row < mat->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Only for local rows, %" PetscInt_FMT " not in [%" PetscInt_FMT ",%" PetscInt_FMT ")", row, mat->rmap->rstart, mat->rmap->rend);
570   PetscCall(PetscLogEventBegin(MAT_GetRow, mat, 0, 0, 0));
571   PetscUseTypeMethod(mat, getrow, row, &incols, (PetscInt **)cols, (PetscScalar **)vals);
572   if (ncols) *ncols = incols;
573   PetscCall(PetscLogEventEnd(MAT_GetRow, mat, 0, 0, 0));
574   PetscFunctionReturn(PETSC_SUCCESS);
575 }
576 
577 /*@
578   MatConjugate - replaces the matrix values with their complex conjugates
579 
580   Logically Collective
581 
582   Input Parameter:
583 . mat - the matrix
584 
585   Level: advanced
586 
587 .seealso: [](ch_matrices), `Mat`, `MatRealPart()`, `MatImaginaryPart()`, `VecConjugate()`, `MatTranspose()`
588 @*/
589 PetscErrorCode MatConjugate(Mat mat)
590 {
591   PetscFunctionBegin;
592   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
593   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
594   if (PetscDefined(USE_COMPLEX) && mat->hermitian != PETSC_BOOL3_TRUE) {
595     PetscUseTypeMethod(mat, conjugate);
596     PetscCall(PetscObjectStateIncrease((PetscObject)mat));
597   }
598   PetscFunctionReturn(PETSC_SUCCESS);
599 }
600 
601 /*@C
602   MatRestoreRow - Frees any temporary space allocated by `MatGetRow()`.
603 
604   Not Collective
605 
606   Input Parameters:
607 + mat   - the matrix
608 . row   - the row to get
609 . ncols - the number of nonzeros
610 . cols  - the columns of the nonzeros
611 - vals  - if nonzero the column values
612 
613   Level: advanced
614 
615   Notes:
616   This routine should be called after you have finished examining the entries.
617 
618   This routine zeros out `ncols`, `cols`, and `vals`. This is to prevent accidental
619   us of the array after it has been restored. If you pass `NULL`, it will
620   not zero the pointers.  Use of `cols` or `vals` after `MatRestoreRow()` is invalid.
621 
622   Fortran Notes:
623   The calling sequence is
624 .vb
625    MatRestoreRow(matrix,row,ncols,cols,values,ierr)
626       Mat     matrix (input)
627       integer row    (input)
628       integer ncols  (output)
629       integer cols(maxcols) (output)
630       double precision (or double complex) values(maxcols) output
631 .ve
632   Where maxcols >= maximum nonzeros in any row of the matrix.
633 
634   In Fortran `MatRestoreRow()` MUST be called after `MatGetRow()`
635   before another call to `MatGetRow()` can be made.
636 
637 .seealso: [](ch_matrices), `Mat`, `MatGetRow()`
638 @*/
639 PetscErrorCode MatRestoreRow(Mat mat, PetscInt row, PetscInt *ncols, const PetscInt *cols[], const PetscScalar *vals[])
640 {
641   PetscFunctionBegin;
642   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
643   if (ncols) PetscAssertPointer(ncols, 3);
644   PetscCheck(mat->assembled, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
645   if (!mat->ops->restorerow) PetscFunctionReturn(PETSC_SUCCESS);
646   PetscUseTypeMethod(mat, restorerow, row, ncols, (PetscInt **)cols, (PetscScalar **)vals);
647   if (ncols) *ncols = 0;
648   if (cols) *cols = NULL;
649   if (vals) *vals = NULL;
650   PetscFunctionReturn(PETSC_SUCCESS);
651 }
652 
653 /*@
654   MatGetRowUpperTriangular - Sets a flag to enable calls to `MatGetRow()` for matrix in `MATSBAIJ` format.
655   You should call `MatRestoreRowUpperTriangular()` after calling` MatGetRow()` and `MatRestoreRow()` to disable the flag.
656 
657   Not Collective
658 
659   Input Parameter:
660 . mat - the matrix
661 
662   Level: advanced
663 
664   Note:
665   The flag is to ensure that users are aware that `MatGetRow()` only provides the upper triangular part of the row for the matrices in `MATSBAIJ` format.
666 
667 .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MatRestoreRowUpperTriangular()`
668 @*/
669 PetscErrorCode MatGetRowUpperTriangular(Mat mat)
670 {
671   PetscFunctionBegin;
672   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
673   PetscValidType(mat, 1);
674   PetscCheck(mat->assembled, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
675   PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
676   MatCheckPreallocated(mat, 1);
677   if (!mat->ops->getrowuppertriangular) PetscFunctionReturn(PETSC_SUCCESS);
678   PetscUseTypeMethod(mat, getrowuppertriangular);
679   PetscFunctionReturn(PETSC_SUCCESS);
680 }
681 
682 /*@
683   MatRestoreRowUpperTriangular - Disable calls to `MatGetRow()` for matrix in `MATSBAIJ` format.
684 
685   Not Collective
686 
687   Input Parameter:
688 . mat - the matrix
689 
690   Level: advanced
691 
692   Note:
693   This routine should be called after you have finished calls to `MatGetRow()` and `MatRestoreRow()`.
694 
695 .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MatGetRowUpperTriangular()`
696 @*/
697 PetscErrorCode MatRestoreRowUpperTriangular(Mat mat)
698 {
699   PetscFunctionBegin;
700   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
701   PetscValidType(mat, 1);
702   PetscCheck(mat->assembled, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
703   PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
704   MatCheckPreallocated(mat, 1);
705   if (!mat->ops->restorerowuppertriangular) PetscFunctionReturn(PETSC_SUCCESS);
706   PetscUseTypeMethod(mat, restorerowuppertriangular);
707   PetscFunctionReturn(PETSC_SUCCESS);
708 }
709 
710 /*@C
711   MatSetOptionsPrefix - Sets the prefix used for searching for all
712   `Mat` options in the database.
713 
714   Logically Collective
715 
716   Input Parameters:
717 + A      - the matrix
718 - prefix - the prefix to prepend to all option names
719 
720   Level: advanced
721 
722   Notes:
723   A hyphen (-) must NOT be given at the beginning of the prefix name.
724   The first character of all runtime options is AUTOMATICALLY the hyphen.
725 
726   This is NOT used for options for the factorization of the matrix. Normally the
727   prefix is automatically passed in from the PC calling the factorization. To set
728   it directly use  `MatSetOptionsPrefixFactor()`
729 
730 .seealso: [](ch_matrices), `Mat`, `MatSetFromOptions()`, `MatSetOptionsPrefixFactor()`
731 @*/
732 PetscErrorCode MatSetOptionsPrefix(Mat A, const char prefix[])
733 {
734   PetscFunctionBegin;
735   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
736   PetscCall(PetscObjectSetOptionsPrefix((PetscObject)A, prefix));
737   PetscFunctionReturn(PETSC_SUCCESS);
738 }
739 
740 /*@C
741   MatSetOptionsPrefixFactor - Sets the prefix used for searching for all matrix factor options in the database for
742   for matrices created with `MatGetFactor()`
743 
744   Logically Collective
745 
746   Input Parameters:
747 + A      - the matrix
748 - prefix - the prefix to prepend to all option names for the factored matrix
749 
750   Level: developer
751 
752   Notes:
753   A hyphen (-) must NOT be given at the beginning of the prefix name.
754   The first character of all runtime options is AUTOMATICALLY the hyphen.
755 
756   Normally the prefix is automatically passed in from the `PC` calling the factorization. To set
757   it directly when not using `KSP`/`PC` use  `MatSetOptionsPrefixFactor()`
758 
759 .seealso: [](ch_matrices), `Mat`,   [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatSetFromOptions()`, `MatSetOptionsPrefix()`, `MatAppendOptionsPrefixFactor()`
760 @*/
761 PetscErrorCode MatSetOptionsPrefixFactor(Mat A, const char prefix[])
762 {
763   PetscFunctionBegin;
764   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
765   if (prefix) {
766     PetscAssertPointer(prefix, 2);
767     PetscCheck(prefix[0] != '-', PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Options prefix should not begin with a hyphen");
768     if (prefix != A->factorprefix) {
769       PetscCall(PetscFree(A->factorprefix));
770       PetscCall(PetscStrallocpy(prefix, &A->factorprefix));
771     }
772   } else PetscCall(PetscFree(A->factorprefix));
773   PetscFunctionReturn(PETSC_SUCCESS);
774 }
775 
776 /*@C
777   MatAppendOptionsPrefixFactor - Appends to the prefix used for searching for all matrix factor options in the database for
778   for matrices created with `MatGetFactor()`
779 
780   Logically Collective
781 
782   Input Parameters:
783 + A      - the matrix
784 - prefix - the prefix to prepend to all option names for the factored matrix
785 
786   Level: developer
787 
788   Notes:
789   A hyphen (-) must NOT be given at the beginning of the prefix name.
790   The first character of all runtime options is AUTOMATICALLY the hyphen.
791 
792   Normally the prefix is automatically passed in from the `PC` calling the factorization. To set
793   it directly when not using `KSP`/`PC` use  `MatAppendOptionsPrefixFactor()`
794 
795 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `PetscOptionsCreate()`, `PetscOptionsDestroy()`, `PetscObjectSetOptionsPrefix()`, `PetscObjectPrependOptionsPrefix()`,
796           `PetscObjectGetOptionsPrefix()`, `TSAppendOptionsPrefix()`, `SNESAppendOptionsPrefix()`, `KSPAppendOptionsPrefix()`, `MatSetOptionsPrefixFactor()`,
797           `MatSetOptionsPrefix()`
798 @*/
799 PetscErrorCode MatAppendOptionsPrefixFactor(Mat A, const char prefix[])
800 {
801   size_t len1, len2, new_len;
802 
803   PetscFunctionBegin;
804   PetscValidHeader(A, 1);
805   if (!prefix) PetscFunctionReturn(PETSC_SUCCESS);
806   if (!A->factorprefix) {
807     PetscCall(MatSetOptionsPrefixFactor(A, prefix));
808     PetscFunctionReturn(PETSC_SUCCESS);
809   }
810   PetscCheck(prefix[0] != '-', PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Options prefix should not begin with a hyphen");
811 
812   PetscCall(PetscStrlen(A->factorprefix, &len1));
813   PetscCall(PetscStrlen(prefix, &len2));
814   new_len = len1 + len2 + 1;
815   PetscCall(PetscRealloc(new_len * sizeof(*(A->factorprefix)), &A->factorprefix));
816   PetscCall(PetscStrncpy(A->factorprefix + len1, prefix, len2 + 1));
817   PetscFunctionReturn(PETSC_SUCCESS);
818 }
819 
820 /*@C
821   MatAppendOptionsPrefix - Appends to the prefix used for searching for all
822   matrix options in the database.
823 
824   Logically Collective
825 
826   Input Parameters:
827 + A      - the matrix
828 - prefix - the prefix to prepend to all option names
829 
830   Level: advanced
831 
832   Note:
833   A hyphen (-) must NOT be given at the beginning of the prefix name.
834   The first character of all runtime options is AUTOMATICALLY the hyphen.
835 
836 .seealso: [](ch_matrices), `Mat`, `MatGetOptionsPrefix()`, `MatAppendOptionsPrefixFactor()`, `MatSetOptionsPrefix()`
837 @*/
838 PetscErrorCode MatAppendOptionsPrefix(Mat A, const char prefix[])
839 {
840   PetscFunctionBegin;
841   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
842   PetscCall(PetscObjectAppendOptionsPrefix((PetscObject)A, prefix));
843   PetscFunctionReturn(PETSC_SUCCESS);
844 }
845 
846 /*@C
847   MatGetOptionsPrefix - Gets the prefix used for searching for all
848   matrix options in the database.
849 
850   Not Collective
851 
852   Input Parameter:
853 . A - the matrix
854 
855   Output Parameter:
856 . prefix - pointer to the prefix string used
857 
858   Level: advanced
859 
860   Fortran Note:
861   The user should pass in a string `prefix` of
862   sufficient length to hold the prefix.
863 
864 .seealso: [](ch_matrices), `Mat`, `MatAppendOptionsPrefix()`, `MatSetOptionsPrefix()`, `MatAppendOptionsPrefixFactor()`, `MatSetOptionsPrefixFactor()`
865 @*/
866 PetscErrorCode MatGetOptionsPrefix(Mat A, const char *prefix[])
867 {
868   PetscFunctionBegin;
869   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
870   PetscAssertPointer(prefix, 2);
871   PetscCall(PetscObjectGetOptionsPrefix((PetscObject)A, prefix));
872   PetscFunctionReturn(PETSC_SUCCESS);
873 }
874 
875 /*@
876   MatResetPreallocation - Reset matrix to use the original nonzero pattern provided by the user.
877 
878   Collective
879 
880   Input Parameter:
881 . A - the matrix
882 
883   Level: beginner
884 
885   Notes:
886   The allocated memory will be shrunk after calling `MatAssemblyBegin()` and `MatAssemblyEnd()` with `MAT_FINAL_ASSEMBLY`.
887 
888   Users can reset the preallocation to access the original memory.
889 
890   Currently only supported for  `MATAIJ` matrices.
891 
892 .seealso: [](ch_matrices), `Mat`, `MatSeqAIJSetPreallocation()`, `MatMPIAIJSetPreallocation()`, `MatXAIJSetPreallocation()`
893 @*/
894 PetscErrorCode MatResetPreallocation(Mat A)
895 {
896   PetscFunctionBegin;
897   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
898   PetscValidType(A, 1);
899   PetscCheck(A->insertmode == NOT_SET_VALUES, PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot reset preallocation after setting some values but not yet calling MatAssemblyBegin()/MatAsssemblyEnd()");
900   if (A->num_ass == 0) PetscFunctionReturn(PETSC_SUCCESS);
901   PetscUseMethod(A, "MatResetPreallocation_C", (Mat), (A));
902   PetscFunctionReturn(PETSC_SUCCESS);
903 }
904 
905 /*@
906   MatSetUp - Sets up the internal matrix data structures for later use.
907 
908   Collective
909 
910   Input Parameter:
911 . A - the matrix
912 
913   Level: intermediate
914 
915   Notes:
916   If the user has not set preallocation for this matrix then an efficient algorithm will be used for the first round of
917   setting values in the matrix.
918 
919   This routine is called internally by other matrix functions when needed so rarely needs to be called by users
920 
921 .seealso: [](ch_matrices), `Mat`, `MatMult()`, `MatCreate()`, `MatDestroy()`, `MatXAIJSetPreallocation()`
922 @*/
923 PetscErrorCode MatSetUp(Mat A)
924 {
925   PetscFunctionBegin;
926   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
927   if (!((PetscObject)A)->type_name) {
928     PetscMPIInt size;
929 
930     PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
931     PetscCall(MatSetType(A, size == 1 ? MATSEQAIJ : MATMPIAIJ));
932   }
933   if (!A->preallocated) PetscTryTypeMethod(A, setup);
934   PetscCall(PetscLayoutSetUp(A->rmap));
935   PetscCall(PetscLayoutSetUp(A->cmap));
936   A->preallocated = PETSC_TRUE;
937   PetscFunctionReturn(PETSC_SUCCESS);
938 }
939 
940 #if defined(PETSC_HAVE_SAWS)
941   #include <petscviewersaws.h>
942 #endif
943 
944 /*
945    If threadsafety is on extraneous matrices may be printed
946 
947    This flag cannot be stored in the matrix because the original matrix in MatView() may assemble a new matrix which is passed into MatViewFromOptions()
948 */
949 #if !defined(PETSC_HAVE_THREADSAFETY)
950 static PetscInt insidematview = 0;
951 #endif
952 
953 /*@C
954   MatViewFromOptions - View properties of the matrix based on options set in the options database
955 
956   Collective
957 
958   Input Parameters:
959 + A    - the matrix
960 . obj  - optional additional object that provides the options prefix to use
961 - name - command line option
962 
963   Options Database Key:
964 . -mat_view [viewertype]:... - the viewer and its options
965 
966   Level: intermediate
967 
968   Note:
969 .vb
970     If no value is provided ascii:stdout is used
971        ascii[:[filename][:[format][:append]]]    defaults to stdout - format can be one of ascii_info, ascii_info_detail, or ascii_matlab,
972                                                   for example ascii::ascii_info prints just the information about the object not all details
973                                                   unless :append is given filename opens in write mode, overwriting what was already there
974        binary[:[filename][:[format][:append]]]   defaults to the file binaryoutput
975        draw[:drawtype[:filename]]                for example, draw:tikz, draw:tikz:figure.tex  or draw:x
976        socket[:port]                             defaults to the standard output port
977        saws[:communicatorname]                    publishes object to the Scientific Application Webserver (SAWs)
978 .ve
979 
980 .seealso: [](ch_matrices), `Mat`, `MatView()`, `PetscObjectViewFromOptions()`, `MatCreate()`
981 @*/
982 PetscErrorCode MatViewFromOptions(Mat A, PetscObject obj, const char name[])
983 {
984   PetscFunctionBegin;
985   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
986 #if !defined(PETSC_HAVE_THREADSAFETY)
987   if (insidematview) PetscFunctionReturn(PETSC_SUCCESS);
988 #endif
989   PetscCall(PetscObjectViewFromOptions((PetscObject)A, obj, name));
990   PetscFunctionReturn(PETSC_SUCCESS);
991 }
992 
993 /*@C
994   MatView - display information about a matrix in a variety ways
995 
996   Collective
997 
998   Input Parameters:
999 + mat    - the matrix
1000 - viewer - visualization context
1001 
1002   Options Database Keys:
1003 + -mat_view ::ascii_info           - Prints info on matrix at conclusion of `MatAssemblyEnd()`
1004 . -mat_view ::ascii_info_detail    - Prints more detailed info
1005 . -mat_view                        - Prints matrix in ASCII format
1006 . -mat_view ::ascii_matlab         - Prints matrix in MATLAB format
1007 . -mat_view draw                   - PetscDraws nonzero structure of matrix, using `MatView()` and `PetscDrawOpenX()`.
1008 . -display <name>                  - Sets display name (default is host)
1009 . -draw_pause <sec>                - Sets number of seconds to pause after display
1010 . -mat_view socket                 - Sends matrix to socket, can be accessed from MATLAB (see Users-Manual: ch_matlab for details)
1011 . -viewer_socket_machine <machine> - -
1012 . -viewer_socket_port <port>       - -
1013 . -mat_view binary                 - save matrix to file in binary format
1014 - -viewer_binary_filename <name>   - -
1015 
1016   Level: beginner
1017 
1018   Notes:
1019   The available visualization contexts include
1020 +    `PETSC_VIEWER_STDOUT_SELF` - for sequential matrices
1021 .    `PETSC_VIEWER_STDOUT_WORLD` - for parallel matrices created on `PETSC_COMM_WORLD`
1022 .    `PETSC_VIEWER_STDOUT_`(comm) - for matrices created on MPI communicator comm
1023 -     `PETSC_VIEWER_DRAW_WORLD` - graphical display of nonzero structure
1024 
1025   The user can open alternative visualization contexts with
1026 +    `PetscViewerASCIIOpen()` - Outputs matrix to a specified file
1027 .    `PetscViewerBinaryOpen()` - Outputs matrix in binary to a
1028   specified file; corresponding input uses `MatLoad()`
1029 .    `PetscViewerDrawOpen()` - Outputs nonzero matrix structure to
1030   an X window display
1031 -    `PetscViewerSocketOpen()` - Outputs matrix to Socket viewer.
1032   Currently only the `MATSEQDENSE` and `MATAIJ`
1033   matrix types support the Socket viewer.
1034 
1035   The user can call `PetscViewerPushFormat()` to specify the output
1036   format of ASCII printed objects (when using `PETSC_VIEWER_STDOUT_SELF`,
1037   `PETSC_VIEWER_STDOUT_WORLD` and `PetscViewerASCIIOpen()`).  Available formats include
1038 +    `PETSC_VIEWER_DEFAULT` - default, prints matrix contents
1039 .    `PETSC_VIEWER_ASCII_MATLAB` - prints matrix contents in MATLAB format
1040 .    `PETSC_VIEWER_ASCII_DENSE` - prints entire matrix including zeros
1041 .    `PETSC_VIEWER_ASCII_COMMON` - prints matrix contents, using a sparse
1042   format common among all matrix types
1043 .    `PETSC_VIEWER_ASCII_IMPL` - prints matrix contents, using an implementation-specific
1044   format (which is in many cases the same as the default)
1045 .    `PETSC_VIEWER_ASCII_INFO` - prints basic information about the matrix
1046   size and structure (not the matrix entries)
1047 -    `PETSC_VIEWER_ASCII_INFO_DETAIL` - prints more detailed information about
1048   the matrix structure
1049 
1050   The ASCII viewers are only recommended for small matrices on at most a moderate number of processes,
1051   the program will seemingly hang and take hours for larger matrices, for larger matrices one should use the binary format.
1052 
1053   In the debugger you can do "call MatView(mat,0)" to display the matrix. (The same holds for any PETSc object viewer).
1054 
1055   See the manual page for `MatLoad()` for the exact format of the binary file when the binary
1056   viewer is used.
1057 
1058   See share/petsc/matlab/PetscBinaryRead.m for a MATLAB code that can read in the binary file when the binary
1059   viewer is used and lib/petsc/bin/PetscBinaryIO.py for loading them into Python.
1060 
1061   One can use '-mat_view draw -draw_pause -1' to pause the graphical display of matrix nonzero structure,
1062   and then use the following mouse functions.
1063 .vb
1064   left mouse: zoom in
1065   middle mouse: zoom out
1066   right mouse: continue with the simulation
1067 .ve
1068 
1069 .seealso: [](ch_matrices), `Mat`, `PetscViewerPushFormat()`, `PetscViewerASCIIOpen()`, `PetscViewerDrawOpen()`, `PetscViewer`,
1070           `PetscViewerSocketOpen()`, `PetscViewerBinaryOpen()`, `MatLoad()`, `MatViewFromOptions()`
1071 @*/
1072 PetscErrorCode MatView(Mat mat, PetscViewer viewer)
1073 {
1074   PetscInt          rows, cols, rbs, cbs;
1075   PetscBool         isascii, isstring, issaws;
1076   PetscViewerFormat format;
1077   PetscMPIInt       size;
1078 
1079   PetscFunctionBegin;
1080   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
1081   PetscValidType(mat, 1);
1082   if (!viewer) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)mat), &viewer));
1083   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
1084   PetscCheckSameComm(mat, 1, viewer, 2);
1085 
1086   PetscCall(PetscViewerGetFormat(viewer, &format));
1087   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)mat), &size));
1088   if (size == 1 && format == PETSC_VIEWER_LOAD_BALANCE) PetscFunctionReturn(PETSC_SUCCESS);
1089 
1090 #if !defined(PETSC_HAVE_THREADSAFETY)
1091   insidematview++;
1092 #endif
1093   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSTRING, &isstring));
1094   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii));
1095   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSAWS, &issaws));
1096   PetscCheck((isascii && (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL)) || !mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "No viewers for factored matrix except ASCII, info, or info_detail");
1097 
1098   PetscCall(PetscLogEventBegin(MAT_View, mat, viewer, 0, 0));
1099   if (isascii) {
1100     if (!mat->preallocated) {
1101       PetscCall(PetscViewerASCIIPrintf(viewer, "Matrix has not been preallocated yet\n"));
1102 #if !defined(PETSC_HAVE_THREADSAFETY)
1103       insidematview--;
1104 #endif
1105       PetscCall(PetscLogEventEnd(MAT_View, mat, viewer, 0, 0));
1106       PetscFunctionReturn(PETSC_SUCCESS);
1107     }
1108     if (!mat->assembled) {
1109       PetscCall(PetscViewerASCIIPrintf(viewer, "Matrix has not been assembled yet\n"));
1110 #if !defined(PETSC_HAVE_THREADSAFETY)
1111       insidematview--;
1112 #endif
1113       PetscCall(PetscLogEventEnd(MAT_View, mat, viewer, 0, 0));
1114       PetscFunctionReturn(PETSC_SUCCESS);
1115     }
1116     PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)mat, viewer));
1117     if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
1118       MatNullSpace nullsp, transnullsp;
1119 
1120       PetscCall(PetscViewerASCIIPushTab(viewer));
1121       PetscCall(MatGetSize(mat, &rows, &cols));
1122       PetscCall(MatGetBlockSizes(mat, &rbs, &cbs));
1123       if (rbs != 1 || cbs != 1) {
1124         if (rbs != cbs) PetscCall(PetscViewerASCIIPrintf(viewer, "rows=%" PetscInt_FMT ", cols=%" PetscInt_FMT ", rbs=%" PetscInt_FMT ", cbs=%" PetscInt_FMT "\n", rows, cols, rbs, cbs));
1125         else PetscCall(PetscViewerASCIIPrintf(viewer, "rows=%" PetscInt_FMT ", cols=%" PetscInt_FMT ", bs=%" PetscInt_FMT "\n", rows, cols, rbs));
1126       } else PetscCall(PetscViewerASCIIPrintf(viewer, "rows=%" PetscInt_FMT ", cols=%" PetscInt_FMT "\n", rows, cols));
1127       if (mat->factortype) {
1128         MatSolverType solver;
1129         PetscCall(MatFactorGetSolverType(mat, &solver));
1130         PetscCall(PetscViewerASCIIPrintf(viewer, "package used to perform factorization: %s\n", solver));
1131       }
1132       if (mat->ops->getinfo) {
1133         MatInfo info;
1134         PetscCall(MatGetInfo(mat, MAT_GLOBAL_SUM, &info));
1135         PetscCall(PetscViewerASCIIPrintf(viewer, "total: nonzeros=%.f, allocated nonzeros=%.f\n", info.nz_used, info.nz_allocated));
1136         if (!mat->factortype) PetscCall(PetscViewerASCIIPrintf(viewer, "total number of mallocs used during MatSetValues calls=%" PetscInt_FMT "\n", (PetscInt)info.mallocs));
1137       }
1138       PetscCall(MatGetNullSpace(mat, &nullsp));
1139       PetscCall(MatGetTransposeNullSpace(mat, &transnullsp));
1140       if (nullsp) PetscCall(PetscViewerASCIIPrintf(viewer, "  has attached null space\n"));
1141       if (transnullsp && transnullsp != nullsp) PetscCall(PetscViewerASCIIPrintf(viewer, "  has attached transposed null space\n"));
1142       PetscCall(MatGetNearNullSpace(mat, &nullsp));
1143       if (nullsp) PetscCall(PetscViewerASCIIPrintf(viewer, "  has attached near null space\n"));
1144       PetscCall(PetscViewerASCIIPushTab(viewer));
1145       PetscCall(MatProductView(mat, viewer));
1146       PetscCall(PetscViewerASCIIPopTab(viewer));
1147     }
1148   } else if (issaws) {
1149 #if defined(PETSC_HAVE_SAWS)
1150     PetscMPIInt rank;
1151 
1152     PetscCall(PetscObjectName((PetscObject)mat));
1153     PetscCallMPI(MPI_Comm_rank(PETSC_COMM_WORLD, &rank));
1154     if (!((PetscObject)mat)->amsmem && rank == 0) PetscCall(PetscObjectViewSAWs((PetscObject)mat, viewer));
1155 #endif
1156   } else if (isstring) {
1157     const char *type;
1158     PetscCall(MatGetType(mat, &type));
1159     PetscCall(PetscViewerStringSPrintf(viewer, " MatType: %-7.7s", type));
1160     PetscTryTypeMethod(mat, view, viewer);
1161   }
1162   if ((format == PETSC_VIEWER_NATIVE || format == PETSC_VIEWER_LOAD_BALANCE) && mat->ops->viewnative) {
1163     PetscCall(PetscViewerASCIIPushTab(viewer));
1164     PetscUseTypeMethod(mat, viewnative, viewer);
1165     PetscCall(PetscViewerASCIIPopTab(viewer));
1166   } else if (mat->ops->view) {
1167     PetscCall(PetscViewerASCIIPushTab(viewer));
1168     PetscUseTypeMethod(mat, view, viewer);
1169     PetscCall(PetscViewerASCIIPopTab(viewer));
1170   }
1171   if (isascii) {
1172     PetscCall(PetscViewerGetFormat(viewer, &format));
1173     if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) PetscCall(PetscViewerASCIIPopTab(viewer));
1174   }
1175   PetscCall(PetscLogEventEnd(MAT_View, mat, viewer, 0, 0));
1176 #if !defined(PETSC_HAVE_THREADSAFETY)
1177   insidematview--;
1178 #endif
1179   PetscFunctionReturn(PETSC_SUCCESS);
1180 }
1181 
1182 #if defined(PETSC_USE_DEBUG)
1183   #include <../src/sys/totalview/tv_data_display.h>
1184 PETSC_UNUSED static int TV_display_type(const struct _p_Mat *mat)
1185 {
1186   TV_add_row("Local rows", "int", &mat->rmap->n);
1187   TV_add_row("Local columns", "int", &mat->cmap->n);
1188   TV_add_row("Global rows", "int", &mat->rmap->N);
1189   TV_add_row("Global columns", "int", &mat->cmap->N);
1190   TV_add_row("Typename", TV_ascii_string_type, ((PetscObject)mat)->type_name);
1191   return TV_format_OK;
1192 }
1193 #endif
1194 
1195 /*@C
1196   MatLoad - Loads a matrix that has been stored in binary/HDF5 format
1197   with `MatView()`.  The matrix format is determined from the options database.
1198   Generates a parallel MPI matrix if the communicator has more than one
1199   processor.  The default matrix type is `MATAIJ`.
1200 
1201   Collective
1202 
1203   Input Parameters:
1204 + mat    - the newly loaded matrix, this needs to have been created with `MatCreate()`
1205             or some related function before a call to `MatLoad()`
1206 - viewer - `PETSCVIEWERBINARY`/`PETSCVIEWERHDF5` file viewer
1207 
1208   Options Database Keys:
1209    Used with block matrix formats (`MATSEQBAIJ`,  ...) to specify
1210    block size
1211 . -matload_block_size <bs> - set block size
1212 
1213   Level: beginner
1214 
1215   Notes:
1216   If the `Mat` type has not yet been given then `MATAIJ` is used, call `MatSetFromOptions()` on the
1217   `Mat` before calling this routine if you wish to set it from the options database.
1218 
1219   `MatLoad()` automatically loads into the options database any options
1220   given in the file filename.info where filename is the name of the file
1221   that was passed to the `PetscViewerBinaryOpen()`. The options in the info
1222   file will be ignored if you use the -viewer_binary_skip_info option.
1223 
1224   If the type or size of mat is not set before a call to `MatLoad()`, PETSc
1225   sets the default matrix type AIJ and sets the local and global sizes.
1226   If type and/or size is already set, then the same are used.
1227 
1228   In parallel, each processor can load a subset of rows (or the
1229   entire matrix).  This routine is especially useful when a large
1230   matrix is stored on disk and only part of it is desired on each
1231   processor.  For example, a parallel solver may access only some of
1232   the rows from each processor.  The algorithm used here reads
1233   relatively small blocks of data rather than reading the entire
1234   matrix and then subsetting it.
1235 
1236   Viewer's `PetscViewerType` must be either `PETSCVIEWERBINARY` or `PETSCVIEWERHDF5`.
1237   Such viewer can be created using `PetscViewerBinaryOpen()` or `PetscViewerHDF5Open()`,
1238   or the sequence like
1239 .vb
1240     `PetscViewer` v;
1241     `PetscViewerCreate`(`PETSC_COMM_WORLD`,&v);
1242     `PetscViewerSetType`(v,`PETSCVIEWERBINARY`);
1243     `PetscViewerSetFromOptions`(v);
1244     `PetscViewerFileSetMode`(v,`FILE_MODE_READ`);
1245     `PetscViewerFileSetName`(v,"datafile");
1246 .ve
1247   The optional `PetscViewerSetFromOptions()` call allows overriding `PetscViewerSetType()` using the option
1248 $ -viewer_type {binary, hdf5}
1249 
1250   See the example src/ksp/ksp/tutorials/ex27.c with the first approach,
1251   and src/mat/tutorials/ex10.c with the second approach.
1252 
1253   In case of `PETSCVIEWERBINARY`, a native PETSc binary format is used. Each of the blocks
1254   is read onto MPI rank 0 and then shipped to its destination MPI rank, one after another.
1255   Multiple objects, both matrices and vectors, can be stored within the same file.
1256   Their `PetscObject` name is ignored; they are loaded in the order of their storage.
1257 
1258   Most users should not need to know the details of the binary storage
1259   format, since `MatLoad()` and `MatView()` completely hide these details.
1260   But for anyone who is interested, the standard binary matrix storage
1261   format is
1262 
1263 .vb
1264     PetscInt    MAT_FILE_CLASSID
1265     PetscInt    number of rows
1266     PetscInt    number of columns
1267     PetscInt    total number of nonzeros
1268     PetscInt    *number nonzeros in each row
1269     PetscInt    *column indices of all nonzeros (starting index is zero)
1270     PetscScalar *values of all nonzeros
1271 .ve
1272   If PETSc was not configured with `--with-64-bit-indices` then only `MATMPIAIJ` matrices with more than `PETSC_INT_MAX` non-zeros can be
1273   stored or loaded (each MPI process part of the matrix must have less than `PETSC_INT_MAX` nonzeros). Since the total nonzero count in this
1274   case will not fit in a (32-bit) `PetscInt` the value `PETSC_INT_MAX` is used for the header entry `total number of nonzeros`.
1275 
1276   PETSc automatically does the byte swapping for
1277   machines that store the bytes reversed. Thus if you write your own binary
1278   read/write routines you have to swap the bytes; see `PetscBinaryRead()`
1279   and `PetscBinaryWrite()` to see how this may be done.
1280 
1281   In case of `PETSCVIEWERHDF5`, a parallel HDF5 reader is used.
1282   Each processor's chunk is loaded independently by its owning MPI process.
1283   Multiple objects, both matrices and vectors, can be stored within the same file.
1284   They are looked up by their PetscObject name.
1285 
1286   As the MATLAB MAT-File Version 7.3 format is also a HDF5 flavor, we decided to use
1287   by default the same structure and naming of the AIJ arrays and column count
1288   within the HDF5 file. This means that a MAT file saved with -v7.3 flag, e.g.
1289 $    save example.mat A b -v7.3
1290   can be directly read by this routine (see Reference 1 for details).
1291 
1292   Depending on your MATLAB version, this format might be a default,
1293   otherwise you can set it as default in Preferences.
1294 
1295   Unless -nocompression flag is used to save the file in MATLAB,
1296   PETSc must be configured with ZLIB package.
1297 
1298   See also examples src/mat/tutorials/ex10.c and src/ksp/ksp/tutorials/ex27.c
1299 
1300   This reader currently supports only real `MATSEQAIJ`, `MATMPIAIJ`, `MATSEQDENSE` and `MATMPIDENSE` matrices for `PETSCVIEWERHDF5`
1301 
1302   Corresponding `MatView()` is not yet implemented.
1303 
1304   The loaded matrix is actually a transpose of the original one in MATLAB,
1305   unless you push `PETSC_VIEWER_HDF5_MAT` format (see examples above).
1306   With this format, matrix is automatically transposed by PETSc,
1307   unless the matrix is marked as SPD or symmetric
1308   (see `MatSetOption()`, `MAT_SPD`, `MAT_SYMMETRIC`).
1309 
1310   References:
1311 .  * - MATLAB(R) Documentation, manual page of save(), https://www.mathworks.com/help/matlab/ref/save.html#btox10b-1-version
1312 
1313 .seealso: [](ch_matrices), `Mat`, `PetscViewerBinaryOpen()`, `PetscViewerSetType()`, `MatView()`, `VecLoad()`
1314  @*/
1315 PetscErrorCode MatLoad(Mat mat, PetscViewer viewer)
1316 {
1317   PetscBool flg;
1318 
1319   PetscFunctionBegin;
1320   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
1321   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
1322 
1323   if (!((PetscObject)mat)->type_name) PetscCall(MatSetType(mat, MATAIJ));
1324 
1325   flg = PETSC_FALSE;
1326   PetscCall(PetscOptionsGetBool(((PetscObject)mat)->options, ((PetscObject)mat)->prefix, "-matload_symmetric", &flg, NULL));
1327   if (flg) {
1328     PetscCall(MatSetOption(mat, MAT_SYMMETRIC, PETSC_TRUE));
1329     PetscCall(MatSetOption(mat, MAT_SYMMETRY_ETERNAL, PETSC_TRUE));
1330   }
1331   flg = PETSC_FALSE;
1332   PetscCall(PetscOptionsGetBool(((PetscObject)mat)->options, ((PetscObject)mat)->prefix, "-matload_spd", &flg, NULL));
1333   if (flg) PetscCall(MatSetOption(mat, MAT_SPD, PETSC_TRUE));
1334 
1335   PetscCall(PetscLogEventBegin(MAT_Load, mat, viewer, 0, 0));
1336   PetscUseTypeMethod(mat, load, viewer);
1337   PetscCall(PetscLogEventEnd(MAT_Load, mat, viewer, 0, 0));
1338   PetscFunctionReturn(PETSC_SUCCESS);
1339 }
1340 
1341 static PetscErrorCode MatDestroy_Redundant(Mat_Redundant **redundant)
1342 {
1343   Mat_Redundant *redund = *redundant;
1344 
1345   PetscFunctionBegin;
1346   if (redund) {
1347     if (redund->matseq) { /* via MatCreateSubMatrices()  */
1348       PetscCall(ISDestroy(&redund->isrow));
1349       PetscCall(ISDestroy(&redund->iscol));
1350       PetscCall(MatDestroySubMatrices(1, &redund->matseq));
1351     } else {
1352       PetscCall(PetscFree2(redund->send_rank, redund->recv_rank));
1353       PetscCall(PetscFree(redund->sbuf_j));
1354       PetscCall(PetscFree(redund->sbuf_a));
1355       for (PetscInt i = 0; i < redund->nrecvs; i++) {
1356         PetscCall(PetscFree(redund->rbuf_j[i]));
1357         PetscCall(PetscFree(redund->rbuf_a[i]));
1358       }
1359       PetscCall(PetscFree4(redund->sbuf_nz, redund->rbuf_nz, redund->rbuf_j, redund->rbuf_a));
1360     }
1361 
1362     if (redund->subcomm) PetscCall(PetscCommDestroy(&redund->subcomm));
1363     PetscCall(PetscFree(redund));
1364   }
1365   PetscFunctionReturn(PETSC_SUCCESS);
1366 }
1367 
1368 /*@C
1369   MatDestroy - Frees space taken by a matrix.
1370 
1371   Collective
1372 
1373   Input Parameter:
1374 . A - the matrix
1375 
1376   Level: beginner
1377 
1378   Developer Note:
1379   Some special arrays of matrices are not destroyed in this routine but instead by the routines called by
1380   `MatDestroySubMatrices()`. Thus one must be sure that any changes here must also be made in those routines.
1381   `MatHeaderMerge()` and `MatHeaderReplace()` also manipulate the data in the `Mat` object and likely need changes
1382   if changes are needed here.
1383 
1384 .seealso: [](ch_matrices), `Mat`, `MatCreate()`
1385 @*/
1386 PetscErrorCode MatDestroy(Mat *A)
1387 {
1388   PetscFunctionBegin;
1389   if (!*A) PetscFunctionReturn(PETSC_SUCCESS);
1390   PetscValidHeaderSpecific(*A, MAT_CLASSID, 1);
1391   if (--((PetscObject)(*A))->refct > 0) {
1392     *A = NULL;
1393     PetscFunctionReturn(PETSC_SUCCESS);
1394   }
1395 
1396   /* if memory was published with SAWs then destroy it */
1397   PetscCall(PetscObjectSAWsViewOff((PetscObject)*A));
1398   PetscTryTypeMethod((*A), destroy);
1399 
1400   PetscCall(PetscFree((*A)->factorprefix));
1401   PetscCall(PetscFree((*A)->defaultvectype));
1402   PetscCall(PetscFree((*A)->defaultrandtype));
1403   PetscCall(PetscFree((*A)->bsizes));
1404   PetscCall(PetscFree((*A)->solvertype));
1405   for (PetscInt i = 0; i < MAT_FACTOR_NUM_TYPES; i++) PetscCall(PetscFree((*A)->preferredordering[i]));
1406   if ((*A)->redundant && (*A)->redundant->matseq[0] == *A) (*A)->redundant->matseq[0] = NULL;
1407   PetscCall(MatDestroy_Redundant(&(*A)->redundant));
1408   PetscCall(MatProductClear(*A));
1409   PetscCall(MatNullSpaceDestroy(&(*A)->nullsp));
1410   PetscCall(MatNullSpaceDestroy(&(*A)->transnullsp));
1411   PetscCall(MatNullSpaceDestroy(&(*A)->nearnullsp));
1412   PetscCall(MatDestroy(&(*A)->schur));
1413   PetscCall(PetscLayoutDestroy(&(*A)->rmap));
1414   PetscCall(PetscLayoutDestroy(&(*A)->cmap));
1415   PetscCall(PetscHeaderDestroy(A));
1416   PetscFunctionReturn(PETSC_SUCCESS);
1417 }
1418 
1419 // PetscClangLinter pragma disable: -fdoc-section-header-unknown
1420 /*@C
1421   MatSetValues - Inserts or adds a block of values into a matrix.
1422   These values may be cached, so `MatAssemblyBegin()` and `MatAssemblyEnd()`
1423   MUST be called after all calls to `MatSetValues()` have been completed.
1424 
1425   Not Collective
1426 
1427   Input Parameters:
1428 + mat  - the matrix
1429 . v    - a logically two-dimensional array of values
1430 . m    - the number of rows
1431 . idxm - the global indices of the rows
1432 . n    - the number of columns
1433 . idxn - the global indices of the columns
1434 - addv - either `ADD_VALUES` to add values to any existing entries, or `INSERT_VALUES` to replace existing entries with new values
1435 
1436   Level: beginner
1437 
1438   Notes:
1439   By default the values, `v`, are stored row-oriented. See `MatSetOption()` for other options.
1440 
1441   Calls to `MatSetValues()` with the `INSERT_VALUES` and `ADD_VALUES`
1442   options cannot be mixed without intervening calls to the assembly
1443   routines.
1444 
1445   `MatSetValues()` uses 0-based row and column numbers in Fortran
1446   as well as in C.
1447 
1448   Negative indices may be passed in `idxm` and `idxn`, these rows and columns are
1449   simply ignored. This allows easily inserting element stiffness matrices
1450   with homogeneous Dirichlet boundary conditions that you don't want represented
1451   in the matrix.
1452 
1453   Efficiency Alert:
1454   The routine `MatSetValuesBlocked()` may offer much better efficiency
1455   for users of block sparse formats (`MATSEQBAIJ` and `MATMPIBAIJ`).
1456 
1457   Developer Note:
1458   This is labeled with C so does not automatically generate Fortran stubs and interfaces
1459   because it requires multiple Fortran interfaces depending on which arguments are scalar or arrays.
1460 
1461 .seealso: [](ch_matrices), `Mat`, `MatSetOption()`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValuesBlocked()`, `MatSetValuesLocal()`,
1462           `InsertMode`, `INSERT_VALUES`, `ADD_VALUES`
1463 @*/
1464 PetscErrorCode MatSetValues(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], const PetscScalar v[], InsertMode addv)
1465 {
1466   PetscFunctionBeginHot;
1467   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
1468   PetscValidType(mat, 1);
1469   if (!m || !n) PetscFunctionReturn(PETSC_SUCCESS); /* no values to insert */
1470   PetscAssertPointer(idxm, 3);
1471   PetscAssertPointer(idxn, 5);
1472   MatCheckPreallocated(mat, 1);
1473 
1474   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
1475   else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values");
1476 
1477   if (PetscDefined(USE_DEBUG)) {
1478     PetscInt i, j;
1479 
1480     PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
1481     for (i = 0; i < m; i++) {
1482       for (j = 0; j < n; j++) {
1483         if (mat->erroriffailure && PetscIsInfOrNanScalar(v[i * n + j]))
1484 #if defined(PETSC_USE_COMPLEX)
1485           SETERRQ(PETSC_COMM_SELF, PETSC_ERR_FP, "Inserting %g+i%g at matrix entry (%" PetscInt_FMT ",%" PetscInt_FMT ")", (double)PetscRealPart(v[i * n + j]), (double)PetscImaginaryPart(v[i * n + j]), idxm[i], idxn[j]);
1486 #else
1487           SETERRQ(PETSC_COMM_SELF, PETSC_ERR_FP, "Inserting %g at matrix entry (%" PetscInt_FMT ",%" PetscInt_FMT ")", (double)v[i * n + j], idxm[i], idxn[j]);
1488 #endif
1489       }
1490     }
1491     for (i = 0; i < m; i++) PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot insert in row %" PetscInt_FMT ", maximum is %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
1492     for (i = 0; i < n; i++) PetscCheck(idxn[i] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot insert in column %" PetscInt_FMT ", maximum is %" PetscInt_FMT, idxn[i], mat->cmap->N - 1);
1493   }
1494 
1495   if (mat->assembled) {
1496     mat->was_assembled = PETSC_TRUE;
1497     mat->assembled     = PETSC_FALSE;
1498   }
1499   PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0));
1500   PetscUseTypeMethod(mat, setvalues, m, idxm, n, idxn, v, addv);
1501   PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0));
1502   PetscFunctionReturn(PETSC_SUCCESS);
1503 }
1504 
1505 // PetscClangLinter pragma disable: -fdoc-section-header-unknown
1506 /*@C
1507   MatSetValuesIS - Inserts or adds a block of values into a matrix using an `IS` to indicate the rows and columns
1508   These values may be cached, so `MatAssemblyBegin()` and `MatAssemblyEnd()`
1509   MUST be called after all calls to `MatSetValues()` have been completed.
1510 
1511   Not Collective
1512 
1513   Input Parameters:
1514 + mat  - the matrix
1515 . v    - a logically two-dimensional array of values
1516 . ism  - the rows to provide
1517 . isn  - the columns to provide
1518 - addv - either `ADD_VALUES` to add values to any existing entries, or `INSERT_VALUES` to replace existing entries with new values
1519 
1520   Level: beginner
1521 
1522   Notes:
1523   By default the values, `v`, are stored row-oriented. See `MatSetOption()` for other options.
1524 
1525   Calls to `MatSetValues()` with the `INSERT_VALUES` and `ADD_VALUES`
1526   options cannot be mixed without intervening calls to the assembly
1527   routines.
1528 
1529   `MatSetValues()` uses 0-based row and column numbers in Fortran
1530   as well as in C.
1531 
1532   Negative indices may be passed in `ism` and `isn`, these rows and columns are
1533   simply ignored. This allows easily inserting element stiffness matrices
1534   with homogeneous Dirichlet boundary conditions that you don't want represented
1535   in the matrix.
1536 
1537   Efficiency Alert:
1538   The routine `MatSetValuesBlocked()` may offer much better efficiency
1539   for users of block sparse formats (`MATSEQBAIJ` and `MATMPIBAIJ`).
1540 
1541   This is currently not optimized for any particular `ISType`
1542 
1543   Developer Note:
1544   This is labeled with C so does not automatically generate Fortran stubs and interfaces
1545   because it requires multiple Fortran interfaces depending on which arguments are scalar or arrays.
1546 
1547 .seealso: [](ch_matrices), `Mat`, `MatSetOption()`, `MatSetValues()`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValuesBlocked()`, `MatSetValuesLocal()`,
1548           `InsertMode`, `INSERT_VALUES`, `ADD_VALUES`
1549 @*/
1550 PetscErrorCode MatSetValuesIS(Mat mat, IS ism, IS isn, const PetscScalar v[], InsertMode addv)
1551 {
1552   PetscInt        m, n;
1553   const PetscInt *rows, *cols;
1554 
1555   PetscFunctionBeginHot;
1556   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
1557   PetscCall(ISGetIndices(ism, &rows));
1558   PetscCall(ISGetIndices(isn, &cols));
1559   PetscCall(ISGetLocalSize(ism, &m));
1560   PetscCall(ISGetLocalSize(isn, &n));
1561   PetscCall(MatSetValues(mat, m, rows, n, cols, v, addv));
1562   PetscCall(ISRestoreIndices(ism, &rows));
1563   PetscCall(ISRestoreIndices(isn, &cols));
1564   PetscFunctionReturn(PETSC_SUCCESS);
1565 }
1566 
1567 /*@
1568   MatSetValuesRowLocal - Inserts a row (block row for `MATBAIJ` matrices) of nonzero
1569   values into a matrix
1570 
1571   Not Collective
1572 
1573   Input Parameters:
1574 + mat - the matrix
1575 . row - the (block) row to set
1576 - v   - a logically two-dimensional array of values
1577 
1578   Level: intermediate
1579 
1580   Notes:
1581   The values, `v`, are column-oriented (for the block version) and sorted
1582 
1583   All the nonzero values in `row` must be provided
1584 
1585   The matrix must have previously had its column indices set, likely by having been assembled.
1586 
1587   `row` must belong to this MPI process
1588 
1589 .seealso: [](ch_matrices), `Mat`, `MatSetOption()`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValuesBlocked()`, `MatSetValuesLocal()`,
1590           `InsertMode`, `INSERT_VALUES`, `ADD_VALUES`, `MatSetValues()`, `MatSetValuesRow()`, `MatSetLocalToGlobalMapping()`
1591 @*/
1592 PetscErrorCode MatSetValuesRowLocal(Mat mat, PetscInt row, const PetscScalar v[])
1593 {
1594   PetscInt globalrow;
1595 
1596   PetscFunctionBegin;
1597   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
1598   PetscValidType(mat, 1);
1599   PetscAssertPointer(v, 3);
1600   PetscCall(ISLocalToGlobalMappingApply(mat->rmap->mapping, 1, &row, &globalrow));
1601   PetscCall(MatSetValuesRow(mat, globalrow, v));
1602   PetscFunctionReturn(PETSC_SUCCESS);
1603 }
1604 
1605 /*@
1606   MatSetValuesRow - Inserts a row (block row for `MATBAIJ` matrices) of nonzero
1607   values into a matrix
1608 
1609   Not Collective
1610 
1611   Input Parameters:
1612 + mat - the matrix
1613 . row - the (block) row to set
1614 - v   - a logically two-dimensional (column major) array of values for  block matrices with blocksize larger than one, otherwise a one dimensional array of values
1615 
1616   Level: advanced
1617 
1618   Notes:
1619   The values, `v`, are column-oriented for the block version.
1620 
1621   All the nonzeros in `row` must be provided
1622 
1623   THE MATRIX MUST HAVE PREVIOUSLY HAD ITS COLUMN INDICES SET. IT IS RARE THAT THIS ROUTINE IS USED, usually `MatSetValues()` is used.
1624 
1625   `row` must belong to this process
1626 
1627 .seealso: [](ch_matrices), `Mat`, `MatSetValues()`, `MatSetOption()`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValuesBlocked()`, `MatSetValuesLocal()`,
1628           `InsertMode`, `INSERT_VALUES`, `ADD_VALUES`
1629 @*/
1630 PetscErrorCode MatSetValuesRow(Mat mat, PetscInt row, const PetscScalar v[])
1631 {
1632   PetscFunctionBeginHot;
1633   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
1634   PetscValidType(mat, 1);
1635   MatCheckPreallocated(mat, 1);
1636   PetscAssertPointer(v, 3);
1637   PetscCheck(mat->insertmode != ADD_VALUES, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add and insert values");
1638   PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
1639   mat->insertmode = INSERT_VALUES;
1640 
1641   if (mat->assembled) {
1642     mat->was_assembled = PETSC_TRUE;
1643     mat->assembled     = PETSC_FALSE;
1644   }
1645   PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0));
1646   PetscUseTypeMethod(mat, setvaluesrow, row, v);
1647   PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0));
1648   PetscFunctionReturn(PETSC_SUCCESS);
1649 }
1650 
1651 // PetscClangLinter pragma disable: -fdoc-section-header-unknown
1652 /*@
1653   MatSetValuesStencil - Inserts or adds a block of values into a matrix.
1654   Using structured grid indexing
1655 
1656   Not Collective
1657 
1658   Input Parameters:
1659 + mat  - the matrix
1660 . m    - number of rows being entered
1661 . idxm - grid coordinates (and component number when dof > 1) for matrix rows being entered
1662 . n    - number of columns being entered
1663 . idxn - grid coordinates (and component number when dof > 1) for matrix columns being entered
1664 . v    - a logically two-dimensional array of values
1665 - addv - either `ADD_VALUES` to add to existing entries at that location or `INSERT_VALUES` to replace existing entries with new values
1666 
1667   Level: beginner
1668 
1669   Notes:
1670   By default the values, `v`, are row-oriented.  See `MatSetOption()` for other options.
1671 
1672   Calls to `MatSetValuesStencil()` with the `INSERT_VALUES` and `ADD_VALUES`
1673   options cannot be mixed without intervening calls to the assembly
1674   routines.
1675 
1676   The grid coordinates are across the entire grid, not just the local portion
1677 
1678   `MatSetValuesStencil()` uses 0-based row and column numbers in Fortran
1679   as well as in C.
1680 
1681   For setting/accessing vector values via array coordinates you can use the `DMDAVecGetArray()` routine
1682 
1683   In order to use this routine you must either obtain the matrix with `DMCreateMatrix()`
1684   or call `MatSetLocalToGlobalMapping()` and `MatSetStencil()` first.
1685 
1686   The columns and rows in the stencil passed in MUST be contained within the
1687   ghost region of the given process as set with DMDACreateXXX() or `MatSetStencil()`. For example,
1688   if you create a `DMDA` with an overlap of one grid level and on a particular process its first
1689   local nonghost x logical coordinate is 6 (so its first ghost x logical coordinate is 5) the
1690   first i index you can use in your column and row indices in `MatSetStencil()` is 5.
1691 
1692   For periodic boundary conditions use negative indices for values to the left (below 0; that are to be
1693   obtained by wrapping values from right edge). For values to the right of the last entry using that index plus one
1694   etc to obtain values that obtained by wrapping the values from the left edge. This does not work for anything but the
1695   `DM_BOUNDARY_PERIODIC` boundary type.
1696 
1697   For indices that don't mean anything for your case (like the k index when working in 2d) or the c index when you have
1698   a single value per point) you can skip filling those indices.
1699 
1700   Inspired by the structured grid interface to the HYPRE package
1701   (https://computation.llnl.gov/projects/hypre-scalable-linear-solvers-multigrid-methods)
1702 
1703   Efficiency Alert:
1704   The routine `MatSetValuesBlockedStencil()` may offer much better efficiency
1705   for users of block sparse formats (`MATSEQBAIJ` and `MATMPIBAIJ`).
1706 
1707   Fortran Note:
1708   `idxm` and `idxn` should be declared as
1709 $     MatStencil idxm(4,m),idxn(4,n)
1710   and the values inserted using
1711 .vb
1712     idxm(MatStencil_i,1) = i
1713     idxm(MatStencil_j,1) = j
1714     idxm(MatStencil_k,1) = k
1715     idxm(MatStencil_c,1) = c
1716     etc
1717 .ve
1718 
1719 .seealso: [](ch_matrices), `Mat`, `DMDA`, `MatSetOption()`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValuesBlocked()`, `MatSetValuesLocal()`
1720           `MatSetValues()`, `MatSetValuesBlockedStencil()`, `MatSetStencil()`, `DMCreateMatrix()`, `DMDAVecGetArray()`, `MatStencil`
1721 @*/
1722 PetscErrorCode MatSetValuesStencil(Mat mat, PetscInt m, const MatStencil idxm[], PetscInt n, const MatStencil idxn[], const PetscScalar v[], InsertMode addv)
1723 {
1724   PetscInt  buf[8192], *bufm = NULL, *bufn = NULL, *jdxm, *jdxn;
1725   PetscInt  j, i, dim = mat->stencil.dim, *dims = mat->stencil.dims + 1, tmp;
1726   PetscInt *starts = mat->stencil.starts, *dxm = (PetscInt *)idxm, *dxn = (PetscInt *)idxn, sdim = dim - (1 - (PetscInt)mat->stencil.noc);
1727 
1728   PetscFunctionBegin;
1729   if (!m || !n) PetscFunctionReturn(PETSC_SUCCESS); /* no values to insert */
1730   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
1731   PetscValidType(mat, 1);
1732   PetscAssertPointer(idxm, 3);
1733   PetscAssertPointer(idxn, 5);
1734 
1735   if ((m + n) <= (PetscInt)PETSC_STATIC_ARRAY_LENGTH(buf)) {
1736     jdxm = buf;
1737     jdxn = buf + m;
1738   } else {
1739     PetscCall(PetscMalloc2(m, &bufm, n, &bufn));
1740     jdxm = bufm;
1741     jdxn = bufn;
1742   }
1743   for (i = 0; i < m; i++) {
1744     for (j = 0; j < 3 - sdim; j++) dxm++;
1745     tmp = *dxm++ - starts[0];
1746     for (j = 0; j < dim - 1; j++) {
1747       if ((*dxm++ - starts[j + 1]) < 0 || tmp < 0) tmp = -1;
1748       else tmp = tmp * dims[j] + *(dxm - 1) - starts[j + 1];
1749     }
1750     if (mat->stencil.noc) dxm++;
1751     jdxm[i] = tmp;
1752   }
1753   for (i = 0; i < n; i++) {
1754     for (j = 0; j < 3 - sdim; j++) dxn++;
1755     tmp = *dxn++ - starts[0];
1756     for (j = 0; j < dim - 1; j++) {
1757       if ((*dxn++ - starts[j + 1]) < 0 || tmp < 0) tmp = -1;
1758       else tmp = tmp * dims[j] + *(dxn - 1) - starts[j + 1];
1759     }
1760     if (mat->stencil.noc) dxn++;
1761     jdxn[i] = tmp;
1762   }
1763   PetscCall(MatSetValuesLocal(mat, m, jdxm, n, jdxn, v, addv));
1764   PetscCall(PetscFree2(bufm, bufn));
1765   PetscFunctionReturn(PETSC_SUCCESS);
1766 }
1767 
1768 /*@
1769   MatSetValuesBlockedStencil - Inserts or adds a block of values into a matrix.
1770   Using structured grid indexing
1771 
1772   Not Collective
1773 
1774   Input Parameters:
1775 + mat  - the matrix
1776 . m    - number of rows being entered
1777 . idxm - grid coordinates for matrix rows being entered
1778 . n    - number of columns being entered
1779 . idxn - grid coordinates for matrix columns being entered
1780 . v    - a logically two-dimensional array of values
1781 - addv - either `ADD_VALUES` to add to existing entries or `INSERT_VALUES` to replace existing entries with new values
1782 
1783   Level: beginner
1784 
1785   Notes:
1786   By default the values, `v`, are row-oriented and unsorted.
1787   See `MatSetOption()` for other options.
1788 
1789   Calls to `MatSetValuesBlockedStencil()` with the `INSERT_VALUES` and `ADD_VALUES`
1790   options cannot be mixed without intervening calls to the assembly
1791   routines.
1792 
1793   The grid coordinates are across the entire grid, not just the local portion
1794 
1795   `MatSetValuesBlockedStencil()` uses 0-based row and column numbers in Fortran
1796   as well as in C.
1797 
1798   For setting/accessing vector values via array coordinates you can use the `DMDAVecGetArray()` routine
1799 
1800   In order to use this routine you must either obtain the matrix with `DMCreateMatrix()`
1801   or call `MatSetBlockSize()`, `MatSetLocalToGlobalMapping()` and `MatSetStencil()` first.
1802 
1803   The columns and rows in the stencil passed in MUST be contained within the
1804   ghost region of the given process as set with DMDACreateXXX() or `MatSetStencil()`. For example,
1805   if you create a `DMDA` with an overlap of one grid level and on a particular process its first
1806   local nonghost x logical coordinate is 6 (so its first ghost x logical coordinate is 5) the
1807   first i index you can use in your column and row indices in `MatSetStencil()` is 5.
1808 
1809   Negative indices may be passed in idxm and idxn, these rows and columns are
1810   simply ignored. This allows easily inserting element stiffness matrices
1811   with homogeneous Dirichlet boundary conditions that you don't want represented
1812   in the matrix.
1813 
1814   Inspired by the structured grid interface to the HYPRE package
1815   (https://computation.llnl.gov/projects/hypre-scalable-linear-solvers-multigrid-methods)
1816 
1817   Fortran Note:
1818   `idxm` and `idxn` should be declared as
1819 $     MatStencil idxm(4,m),idxn(4,n)
1820   and the values inserted using
1821 .vb
1822     idxm(MatStencil_i,1) = i
1823     idxm(MatStencil_j,1) = j
1824     idxm(MatStencil_k,1) = k
1825    etc
1826 .ve
1827 
1828 .seealso: [](ch_matrices), `Mat`, `DMDA`, `MatSetOption()`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValuesBlocked()`, `MatSetValuesLocal()`
1829           `MatSetValues()`, `MatSetValuesStencil()`, `MatSetStencil()`, `DMCreateMatrix()`, `DMDAVecGetArray()`, `MatStencil`,
1830           `MatSetBlockSize()`, `MatSetLocalToGlobalMapping()`
1831 @*/
1832 PetscErrorCode MatSetValuesBlockedStencil(Mat mat, PetscInt m, const MatStencil idxm[], PetscInt n, const MatStencil idxn[], const PetscScalar v[], InsertMode addv)
1833 {
1834   PetscInt  buf[8192], *bufm = NULL, *bufn = NULL, *jdxm, *jdxn;
1835   PetscInt  j, i, dim = mat->stencil.dim, *dims = mat->stencil.dims + 1, tmp;
1836   PetscInt *starts = mat->stencil.starts, *dxm = (PetscInt *)idxm, *dxn = (PetscInt *)idxn, sdim = dim - (1 - (PetscInt)mat->stencil.noc);
1837 
1838   PetscFunctionBegin;
1839   if (!m || !n) PetscFunctionReturn(PETSC_SUCCESS); /* no values to insert */
1840   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
1841   PetscValidType(mat, 1);
1842   PetscAssertPointer(idxm, 3);
1843   PetscAssertPointer(idxn, 5);
1844   PetscAssertPointer(v, 6);
1845 
1846   if ((m + n) <= (PetscInt)PETSC_STATIC_ARRAY_LENGTH(buf)) {
1847     jdxm = buf;
1848     jdxn = buf + m;
1849   } else {
1850     PetscCall(PetscMalloc2(m, &bufm, n, &bufn));
1851     jdxm = bufm;
1852     jdxn = bufn;
1853   }
1854   for (i = 0; i < m; i++) {
1855     for (j = 0; j < 3 - sdim; j++) dxm++;
1856     tmp = *dxm++ - starts[0];
1857     for (j = 0; j < sdim - 1; j++) {
1858       if ((*dxm++ - starts[j + 1]) < 0 || tmp < 0) tmp = -1;
1859       else tmp = tmp * dims[j] + *(dxm - 1) - starts[j + 1];
1860     }
1861     dxm++;
1862     jdxm[i] = tmp;
1863   }
1864   for (i = 0; i < n; i++) {
1865     for (j = 0; j < 3 - sdim; j++) dxn++;
1866     tmp = *dxn++ - starts[0];
1867     for (j = 0; j < sdim - 1; j++) {
1868       if ((*dxn++ - starts[j + 1]) < 0 || tmp < 0) tmp = -1;
1869       else tmp = tmp * dims[j] + *(dxn - 1) - starts[j + 1];
1870     }
1871     dxn++;
1872     jdxn[i] = tmp;
1873   }
1874   PetscCall(MatSetValuesBlockedLocal(mat, m, jdxm, n, jdxn, v, addv));
1875   PetscCall(PetscFree2(bufm, bufn));
1876   PetscFunctionReturn(PETSC_SUCCESS);
1877 }
1878 
1879 /*@
1880   MatSetStencil - Sets the grid information for setting values into a matrix via
1881   `MatSetValuesStencil()`
1882 
1883   Not Collective
1884 
1885   Input Parameters:
1886 + mat    - the matrix
1887 . dim    - dimension of the grid 1, 2, or 3
1888 . dims   - number of grid points in x, y, and z direction, including ghost points on your processor
1889 . starts - starting point of ghost nodes on your processor in x, y, and z direction
1890 - dof    - number of degrees of freedom per node
1891 
1892   Level: beginner
1893 
1894   Notes:
1895   Inspired by the structured grid interface to the HYPRE package
1896   (www.llnl.gov/CASC/hyper)
1897 
1898   For matrices generated with `DMCreateMatrix()` this routine is automatically called and so not needed by the
1899   user.
1900 
1901 .seealso: [](ch_matrices), `Mat`, `MatStencil`, `MatSetOption()`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValuesBlocked()`, `MatSetValuesLocal()`
1902           `MatSetValues()`, `MatSetValuesBlockedStencil()`, `MatSetValuesStencil()`
1903 @*/
1904 PetscErrorCode MatSetStencil(Mat mat, PetscInt dim, const PetscInt dims[], const PetscInt starts[], PetscInt dof)
1905 {
1906   PetscFunctionBegin;
1907   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
1908   PetscAssertPointer(dims, 3);
1909   PetscAssertPointer(starts, 4);
1910 
1911   mat->stencil.dim = dim + (dof > 1);
1912   for (PetscInt i = 0; i < dim; i++) {
1913     mat->stencil.dims[i]   = dims[dim - i - 1]; /* copy the values in backwards */
1914     mat->stencil.starts[i] = starts[dim - i - 1];
1915   }
1916   mat->stencil.dims[dim]   = dof;
1917   mat->stencil.starts[dim] = 0;
1918   mat->stencil.noc         = (PetscBool)(dof == 1);
1919   PetscFunctionReturn(PETSC_SUCCESS);
1920 }
1921 
1922 /*@C
1923   MatSetValuesBlocked - Inserts or adds a block of values into a matrix.
1924 
1925   Not Collective
1926 
1927   Input Parameters:
1928 + mat  - the matrix
1929 . v    - a logically two-dimensional array of values
1930 . m    - the number of block rows
1931 . idxm - the global block indices
1932 . n    - the number of block columns
1933 . idxn - the global block indices
1934 - addv - either `ADD_VALUES` to add values to any existing entries, or `INSERT_VALUES` replaces existing entries with new values
1935 
1936   Level: intermediate
1937 
1938   Notes:
1939   If you create the matrix yourself (that is not with a call to `DMCreateMatrix()`) then you MUST call
1940   MatXXXXSetPreallocation() or `MatSetUp()` before using this routine.
1941 
1942   The `m` and `n` count the NUMBER of blocks in the row direction and column direction,
1943   NOT the total number of rows/columns; for example, if the block size is 2 and
1944   you are passing in values for rows 2,3,4,5  then m would be 2 (not 4).
1945   The values in idxm would be 1 2; that is the first index for each block divided by
1946   the block size.
1947 
1948   You must call `MatSetBlockSize()` when constructing this matrix (before
1949   preallocating it).
1950 
1951   By default the values, `v`, are row-oriented, so the layout of
1952   `v` is the same as for `MatSetValues()`. See `MatSetOption()` for other options.
1953 
1954   Calls to `MatSetValuesBlocked()` with the `INSERT_VALUES` and `ADD_VALUES`
1955   options cannot be mixed without intervening calls to the assembly
1956   routines.
1957 
1958   `MatSetValuesBlocked()` uses 0-based row and column numbers in Fortran
1959   as well as in C.
1960 
1961   Negative indices may be passed in `idxm` and `idxn`, these rows and columns are
1962   simply ignored. This allows easily inserting element stiffness matrices
1963   with homogeneous Dirichlet boundary conditions that you don't want represented
1964   in the matrix.
1965 
1966   Each time an entry is set within a sparse matrix via `MatSetValues()`,
1967   internal searching must be done to determine where to place the
1968   data in the matrix storage space.  By instead inserting blocks of
1969   entries via `MatSetValuesBlocked()`, the overhead of matrix assembly is
1970   reduced.
1971 
1972   Example:
1973 .vb
1974    Suppose m=n=2 and block size(bs) = 2 The array is
1975 
1976    1  2  | 3  4
1977    5  6  | 7  8
1978    - - - | - - -
1979    9  10 | 11 12
1980    13 14 | 15 16
1981 
1982    v[] should be passed in like
1983    v[] = [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16]
1984 
1985   If you are not using row oriented storage of v (that is you called MatSetOption(mat,MAT_ROW_ORIENTED,PETSC_FALSE)) then
1986    v[] = [1,5,9,13,2,6,10,14,3,7,11,15,4,8,12,16]
1987 .ve
1988 
1989 .seealso: [](ch_matrices), `Mat`, `MatSetBlockSize()`, `MatSetOption()`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValues()`, `MatSetValuesBlockedLocal()`
1990 @*/
1991 PetscErrorCode MatSetValuesBlocked(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], const PetscScalar v[], InsertMode addv)
1992 {
1993   PetscFunctionBeginHot;
1994   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
1995   PetscValidType(mat, 1);
1996   if (!m || !n) PetscFunctionReturn(PETSC_SUCCESS); /* no values to insert */
1997   PetscAssertPointer(idxm, 3);
1998   PetscAssertPointer(idxn, 5);
1999   MatCheckPreallocated(mat, 1);
2000   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
2001   else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values");
2002   if (PetscDefined(USE_DEBUG)) {
2003     PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
2004     PetscCheck(mat->ops->setvaluesblocked || mat->ops->setvalues, PETSC_COMM_SELF, PETSC_ERR_SUP, "Mat type %s", ((PetscObject)mat)->type_name);
2005   }
2006   if (PetscDefined(USE_DEBUG)) {
2007     PetscInt rbs, cbs, M, N, i;
2008     PetscCall(MatGetBlockSizes(mat, &rbs, &cbs));
2009     PetscCall(MatGetSize(mat, &M, &N));
2010     for (i = 0; i < m; i++) PetscCheck(idxm[i] * rbs < M, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row block index %" PetscInt_FMT " (index %" PetscInt_FMT ") greater than row length %" PetscInt_FMT, i, idxm[i], M);
2011     for (i = 0; i < n; i++) PetscCheck(idxn[i] * cbs < N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column block index %" PetscInt_FMT " (index %" PetscInt_FMT ") great than column length %" PetscInt_FMT, i, idxn[i], N);
2012   }
2013   if (mat->assembled) {
2014     mat->was_assembled = PETSC_TRUE;
2015     mat->assembled     = PETSC_FALSE;
2016   }
2017   PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0));
2018   if (mat->ops->setvaluesblocked) {
2019     PetscUseTypeMethod(mat, setvaluesblocked, m, idxm, n, idxn, v, addv);
2020   } else {
2021     PetscInt buf[8192], *bufr = NULL, *bufc = NULL, *iidxm, *iidxn;
2022     PetscInt i, j, bs, cbs;
2023 
2024     PetscCall(MatGetBlockSizes(mat, &bs, &cbs));
2025     if ((m * bs + n * cbs) <= (PetscInt)PETSC_STATIC_ARRAY_LENGTH(buf)) {
2026       iidxm = buf;
2027       iidxn = buf + m * bs;
2028     } else {
2029       PetscCall(PetscMalloc2(m * bs, &bufr, n * cbs, &bufc));
2030       iidxm = bufr;
2031       iidxn = bufc;
2032     }
2033     for (i = 0; i < m; i++) {
2034       for (j = 0; j < bs; j++) iidxm[i * bs + j] = bs * idxm[i] + j;
2035     }
2036     if (m != n || bs != cbs || idxm != idxn) {
2037       for (i = 0; i < n; i++) {
2038         for (j = 0; j < cbs; j++) iidxn[i * cbs + j] = cbs * idxn[i] + j;
2039       }
2040     } else iidxn = iidxm;
2041     PetscCall(MatSetValues(mat, m * bs, iidxm, n * cbs, iidxn, v, addv));
2042     PetscCall(PetscFree2(bufr, bufc));
2043   }
2044   PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0));
2045   PetscFunctionReturn(PETSC_SUCCESS);
2046 }
2047 
2048 /*@C
2049   MatGetValues - Gets a block of local values from a matrix.
2050 
2051   Not Collective; can only return values that are owned by the give process
2052 
2053   Input Parameters:
2054 + mat  - the matrix
2055 . v    - a logically two-dimensional array for storing the values
2056 . m    - the number of rows
2057 . idxm - the  global indices of the rows
2058 . n    - the number of columns
2059 - idxn - the global indices of the columns
2060 
2061   Level: advanced
2062 
2063   Notes:
2064   The user must allocate space (m*n `PetscScalar`s) for the values, `v`.
2065   The values, `v`, are then returned in a row-oriented format,
2066   analogous to that used by default in `MatSetValues()`.
2067 
2068   `MatGetValues()` uses 0-based row and column numbers in
2069   Fortran as well as in C.
2070 
2071   `MatGetValues()` requires that the matrix has been assembled
2072   with `MatAssemblyBegin()`/`MatAssemblyEnd()`.  Thus, calls to
2073   `MatSetValues()` and `MatGetValues()` CANNOT be made in succession
2074   without intermediate matrix assembly.
2075 
2076   Negative row or column indices will be ignored and those locations in `v` will be
2077   left unchanged.
2078 
2079   For the standard row-based matrix formats, `idxm` can only contain rows owned by the requesting MPI process.
2080   That is, rows with global index greater than or equal to rstart and less than rend where rstart and rend are obtainable
2081   from `MatGetOwnershipRange`(mat,&rstart,&rend).
2082 
2083 .seealso: [](ch_matrices), `Mat`, `MatGetRow()`, `MatCreateSubMatrices()`, `MatSetValues()`, `MatGetOwnershipRange()`, `MatGetValuesLocal()`, `MatGetValue()`
2084 @*/
2085 PetscErrorCode MatGetValues(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
2086 {
2087   PetscFunctionBegin;
2088   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
2089   PetscValidType(mat, 1);
2090   if (!m || !n) PetscFunctionReturn(PETSC_SUCCESS);
2091   PetscAssertPointer(idxm, 3);
2092   PetscAssertPointer(idxn, 5);
2093   PetscAssertPointer(v, 6);
2094   PetscCheck(mat->assembled, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
2095   PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
2096   MatCheckPreallocated(mat, 1);
2097 
2098   PetscCall(PetscLogEventBegin(MAT_GetValues, mat, 0, 0, 0));
2099   PetscUseTypeMethod(mat, getvalues, m, idxm, n, idxn, v);
2100   PetscCall(PetscLogEventEnd(MAT_GetValues, mat, 0, 0, 0));
2101   PetscFunctionReturn(PETSC_SUCCESS);
2102 }
2103 
2104 /*@C
2105   MatGetValuesLocal - retrieves values from certain locations in a matrix using the local numbering of the indices
2106   defined previously by `MatSetLocalToGlobalMapping()`
2107 
2108   Not Collective
2109 
2110   Input Parameters:
2111 + mat  - the matrix
2112 . nrow - number of rows
2113 . irow - the row local indices
2114 . ncol - number of columns
2115 - icol - the column local indices
2116 
2117   Output Parameter:
2118 . y - a logically two-dimensional array of values
2119 
2120   Level: advanced
2121 
2122   Notes:
2123   If you create the matrix yourself (that is not with a call to `DMCreateMatrix()`) then you MUST call `MatSetLocalToGlobalMapping()` before using this routine.
2124 
2125   This routine can only return values that are owned by the requesting MPI process. That is, for standard matrix formats, rows that, in the global numbering,
2126   are greater than or equal to rstart and less than rend where rstart and rend are obtainable from `MatGetOwnershipRange`(mat,&rstart,&rend). One can
2127   determine if the resulting global row associated with the local row r is owned by the requesting MPI process by applying the `ISLocalToGlobalMapping` set
2128   with `MatSetLocalToGlobalMapping()`.
2129 
2130   Developer Note:
2131   This is labelled with C so does not automatically generate Fortran stubs and interfaces
2132   because it requires multiple Fortran interfaces depending on which arguments are scalar or arrays.
2133 
2134 .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValues()`, `MatSetLocalToGlobalMapping()`,
2135           `MatSetValuesLocal()`, `MatGetValues()`
2136 @*/
2137 PetscErrorCode MatGetValuesLocal(Mat mat, PetscInt nrow, const PetscInt irow[], PetscInt ncol, const PetscInt icol[], PetscScalar y[])
2138 {
2139   PetscFunctionBeginHot;
2140   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
2141   PetscValidType(mat, 1);
2142   MatCheckPreallocated(mat, 1);
2143   if (!nrow || !ncol) PetscFunctionReturn(PETSC_SUCCESS); /* no values to retrieve */
2144   PetscAssertPointer(irow, 3);
2145   PetscAssertPointer(icol, 5);
2146   if (PetscDefined(USE_DEBUG)) {
2147     PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
2148     PetscCheck(mat->ops->getvalueslocal || mat->ops->getvalues, PETSC_COMM_SELF, PETSC_ERR_SUP, "Mat type %s", ((PetscObject)mat)->type_name);
2149   }
2150   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
2151   PetscCall(PetscLogEventBegin(MAT_GetValues, mat, 0, 0, 0));
2152   if (mat->ops->getvalueslocal) PetscUseTypeMethod(mat, getvalueslocal, nrow, irow, ncol, icol, y);
2153   else {
2154     PetscInt buf[8192], *bufr = NULL, *bufc = NULL, *irowm, *icolm;
2155     if ((nrow + ncol) <= (PetscInt)PETSC_STATIC_ARRAY_LENGTH(buf)) {
2156       irowm = buf;
2157       icolm = buf + nrow;
2158     } else {
2159       PetscCall(PetscMalloc2(nrow, &bufr, ncol, &bufc));
2160       irowm = bufr;
2161       icolm = bufc;
2162     }
2163     PetscCheck(mat->rmap->mapping, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "MatGetValuesLocal() cannot proceed without local-to-global row mapping (See MatSetLocalToGlobalMapping()).");
2164     PetscCheck(mat->cmap->mapping, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "MatGetValuesLocal() cannot proceed without local-to-global column mapping (See MatSetLocalToGlobalMapping()).");
2165     PetscCall(ISLocalToGlobalMappingApply(mat->rmap->mapping, nrow, irow, irowm));
2166     PetscCall(ISLocalToGlobalMappingApply(mat->cmap->mapping, ncol, icol, icolm));
2167     PetscCall(MatGetValues(mat, nrow, irowm, ncol, icolm, y));
2168     PetscCall(PetscFree2(bufr, bufc));
2169   }
2170   PetscCall(PetscLogEventEnd(MAT_GetValues, mat, 0, 0, 0));
2171   PetscFunctionReturn(PETSC_SUCCESS);
2172 }
2173 
2174 /*@
2175   MatSetValuesBatch - Adds (`ADD_VALUES`) many blocks of values into a matrix at once. The blocks must all be square and
2176   the same size. Currently, this can only be called once and creates the given matrix.
2177 
2178   Not Collective
2179 
2180   Input Parameters:
2181 + mat  - the matrix
2182 . nb   - the number of blocks
2183 . bs   - the number of rows (and columns) in each block
2184 . rows - a concatenation of the rows for each block
2185 - v    - a concatenation of logically two-dimensional arrays of values
2186 
2187   Level: advanced
2188 
2189   Notes:
2190   `MatSetPreallocationCOO()` and `MatSetValuesCOO()` may be a better way to provide the values
2191 
2192   In the future, we will extend this routine to handle rectangular blocks, and to allow multiple calls for a given matrix.
2193 
2194 .seealso: [](ch_matrices), `Mat`, `MatSetOption()`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValuesBlocked()`, `MatSetValuesLocal()`,
2195           `InsertMode`, `INSERT_VALUES`, `ADD_VALUES`, `MatSetValues()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
2196 @*/
2197 PetscErrorCode MatSetValuesBatch(Mat mat, PetscInt nb, PetscInt bs, PetscInt rows[], const PetscScalar v[])
2198 {
2199   PetscFunctionBegin;
2200   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
2201   PetscValidType(mat, 1);
2202   PetscAssertPointer(rows, 4);
2203   PetscAssertPointer(v, 5);
2204   PetscAssert(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
2205 
2206   PetscCall(PetscLogEventBegin(MAT_SetValuesBatch, mat, 0, 0, 0));
2207   if (mat->ops->setvaluesbatch) PetscUseTypeMethod(mat, setvaluesbatch, nb, bs, rows, v);
2208   else {
2209     for (PetscInt b = 0; b < nb; ++b) PetscCall(MatSetValues(mat, bs, &rows[b * bs], bs, &rows[b * bs], &v[b * bs * bs], ADD_VALUES));
2210   }
2211   PetscCall(PetscLogEventEnd(MAT_SetValuesBatch, mat, 0, 0, 0));
2212   PetscFunctionReturn(PETSC_SUCCESS);
2213 }
2214 
2215 /*@
2216   MatSetLocalToGlobalMapping - Sets a local-to-global numbering for use by
2217   the routine `MatSetValuesLocal()` to allow users to insert matrix entries
2218   using a local (per-processor) numbering.
2219 
2220   Not Collective
2221 
2222   Input Parameters:
2223 + x        - the matrix
2224 . rmapping - row mapping created with `ISLocalToGlobalMappingCreate()` or `ISLocalToGlobalMappingCreateIS()`
2225 - cmapping - column mapping
2226 
2227   Level: intermediate
2228 
2229   Note:
2230   If the matrix is obtained with `DMCreateMatrix()` then this may already have been called on the matrix
2231 
2232 .seealso: [](ch_matrices), `Mat`, `DM`, `DMCreateMatrix()`, `MatGetLocalToGlobalMapping()`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValues()`, `MatSetValuesLocal()`, `MatGetValuesLocal()`
2233 @*/
2234 PetscErrorCode MatSetLocalToGlobalMapping(Mat x, ISLocalToGlobalMapping rmapping, ISLocalToGlobalMapping cmapping)
2235 {
2236   PetscFunctionBegin;
2237   PetscValidHeaderSpecific(x, MAT_CLASSID, 1);
2238   PetscValidType(x, 1);
2239   if (rmapping) PetscValidHeaderSpecific(rmapping, IS_LTOGM_CLASSID, 2);
2240   if (cmapping) PetscValidHeaderSpecific(cmapping, IS_LTOGM_CLASSID, 3);
2241   if (x->ops->setlocaltoglobalmapping) PetscUseTypeMethod(x, setlocaltoglobalmapping, rmapping, cmapping);
2242   else {
2243     PetscCall(PetscLayoutSetISLocalToGlobalMapping(x->rmap, rmapping));
2244     PetscCall(PetscLayoutSetISLocalToGlobalMapping(x->cmap, cmapping));
2245   }
2246   PetscFunctionReturn(PETSC_SUCCESS);
2247 }
2248 
2249 /*@
2250   MatGetLocalToGlobalMapping - Gets the local-to-global numbering set by `MatSetLocalToGlobalMapping()`
2251 
2252   Not Collective
2253 
2254   Input Parameter:
2255 . A - the matrix
2256 
2257   Output Parameters:
2258 + rmapping - row mapping
2259 - cmapping - column mapping
2260 
2261   Level: advanced
2262 
2263 .seealso: [](ch_matrices), `Mat`, `MatSetLocalToGlobalMapping()`, `MatSetValuesLocal()`
2264 @*/
2265 PetscErrorCode MatGetLocalToGlobalMapping(Mat A, ISLocalToGlobalMapping *rmapping, ISLocalToGlobalMapping *cmapping)
2266 {
2267   PetscFunctionBegin;
2268   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
2269   PetscValidType(A, 1);
2270   if (rmapping) {
2271     PetscAssertPointer(rmapping, 2);
2272     *rmapping = A->rmap->mapping;
2273   }
2274   if (cmapping) {
2275     PetscAssertPointer(cmapping, 3);
2276     *cmapping = A->cmap->mapping;
2277   }
2278   PetscFunctionReturn(PETSC_SUCCESS);
2279 }
2280 
2281 /*@
2282   MatSetLayouts - Sets the `PetscLayout` objects for rows and columns of a matrix
2283 
2284   Logically Collective
2285 
2286   Input Parameters:
2287 + A    - the matrix
2288 . rmap - row layout
2289 - cmap - column layout
2290 
2291   Level: advanced
2292 
2293   Note:
2294   The `PetscLayout` objects are usually created automatically for the matrix so this routine rarely needs to be called.
2295 
2296 .seealso: [](ch_matrices), `Mat`, `PetscLayout`, `MatCreateVecs()`, `MatGetLocalToGlobalMapping()`, `MatGetLayouts()`
2297 @*/
2298 PetscErrorCode MatSetLayouts(Mat A, PetscLayout rmap, PetscLayout cmap)
2299 {
2300   PetscFunctionBegin;
2301   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
2302   PetscCall(PetscLayoutReference(rmap, &A->rmap));
2303   PetscCall(PetscLayoutReference(cmap, &A->cmap));
2304   PetscFunctionReturn(PETSC_SUCCESS);
2305 }
2306 
2307 /*@
2308   MatGetLayouts - Gets the `PetscLayout` objects for rows and columns
2309 
2310   Not Collective
2311 
2312   Input Parameter:
2313 . A - the matrix
2314 
2315   Output Parameters:
2316 + rmap - row layout
2317 - cmap - column layout
2318 
2319   Level: advanced
2320 
2321 .seealso: [](ch_matrices), `Mat`, [Matrix Layouts](sec_matlayout), `PetscLayout`, `MatCreateVecs()`, `MatGetLocalToGlobalMapping()`, `MatSetLayouts()`
2322 @*/
2323 PetscErrorCode MatGetLayouts(Mat A, PetscLayout *rmap, PetscLayout *cmap)
2324 {
2325   PetscFunctionBegin;
2326   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
2327   PetscValidType(A, 1);
2328   if (rmap) {
2329     PetscAssertPointer(rmap, 2);
2330     *rmap = A->rmap;
2331   }
2332   if (cmap) {
2333     PetscAssertPointer(cmap, 3);
2334     *cmap = A->cmap;
2335   }
2336   PetscFunctionReturn(PETSC_SUCCESS);
2337 }
2338 
2339 /*@C
2340   MatSetValuesLocal - Inserts or adds values into certain locations of a matrix,
2341   using a local numbering of the rows and columns.
2342 
2343   Not Collective
2344 
2345   Input Parameters:
2346 + mat  - the matrix
2347 . nrow - number of rows
2348 . irow - the row local indices
2349 . ncol - number of columns
2350 . icol - the column local indices
2351 . y    - a logically two-dimensional array of values
2352 - addv - either `INSERT_VALUES` to add values to any existing entries, or `INSERT_VALUES` to replace existing entries with new values
2353 
2354   Level: intermediate
2355 
2356   Notes:
2357   If you create the matrix yourself (that is not with a call to `DMCreateMatrix()`) then you MUST call `MatSetLocalToGlobalMapping()` before using this routine
2358 
2359   Calls to `MatSetValuesLocal()` with the `INSERT_VALUES` and `ADD_VALUES`
2360   options cannot be mixed without intervening calls to the assembly
2361   routines.
2362 
2363   These values may be cached, so `MatAssemblyBegin()` and `MatAssemblyEnd()`
2364   MUST be called after all calls to `MatSetValuesLocal()` have been completed.
2365 
2366   Developer Note:
2367   This is labeled with C so does not automatically generate Fortran stubs and interfaces
2368   because it requires multiple Fortran interfaces depending on which arguments are scalar or arrays.
2369 
2370 .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValues()`, `MatSetLocalToGlobalMapping()`,
2371           `MatGetValuesLocal()`
2372 @*/
2373 PetscErrorCode MatSetValuesLocal(Mat mat, PetscInt nrow, const PetscInt irow[], PetscInt ncol, const PetscInt icol[], const PetscScalar y[], InsertMode addv)
2374 {
2375   PetscFunctionBeginHot;
2376   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
2377   PetscValidType(mat, 1);
2378   MatCheckPreallocated(mat, 1);
2379   if (!nrow || !ncol) PetscFunctionReturn(PETSC_SUCCESS); /* no values to insert */
2380   PetscAssertPointer(irow, 3);
2381   PetscAssertPointer(icol, 5);
2382   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
2383   else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values");
2384   if (PetscDefined(USE_DEBUG)) {
2385     PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
2386     PetscCheck(mat->ops->setvalueslocal || mat->ops->setvalues, PETSC_COMM_SELF, PETSC_ERR_SUP, "Mat type %s", ((PetscObject)mat)->type_name);
2387   }
2388 
2389   if (mat->assembled) {
2390     mat->was_assembled = PETSC_TRUE;
2391     mat->assembled     = PETSC_FALSE;
2392   }
2393   PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0));
2394   if (mat->ops->setvalueslocal) PetscUseTypeMethod(mat, setvalueslocal, nrow, irow, ncol, icol, y, addv);
2395   else {
2396     PetscInt        buf[8192], *bufr = NULL, *bufc = NULL;
2397     const PetscInt *irowm, *icolm;
2398 
2399     if ((!mat->rmap->mapping && !mat->cmap->mapping) || (nrow + ncol) <= (PetscInt)PETSC_STATIC_ARRAY_LENGTH(buf)) {
2400       bufr  = buf;
2401       bufc  = buf + nrow;
2402       irowm = bufr;
2403       icolm = bufc;
2404     } else {
2405       PetscCall(PetscMalloc2(nrow, &bufr, ncol, &bufc));
2406       irowm = bufr;
2407       icolm = bufc;
2408     }
2409     if (mat->rmap->mapping) PetscCall(ISLocalToGlobalMappingApply(mat->rmap->mapping, nrow, irow, bufr));
2410     else irowm = irow;
2411     if (mat->cmap->mapping) {
2412       if (mat->cmap->mapping != mat->rmap->mapping || ncol != nrow || icol != irow) {
2413         PetscCall(ISLocalToGlobalMappingApply(mat->cmap->mapping, ncol, icol, bufc));
2414       } else icolm = irowm;
2415     } else icolm = icol;
2416     PetscCall(MatSetValues(mat, nrow, irowm, ncol, icolm, y, addv));
2417     if (bufr != buf) PetscCall(PetscFree2(bufr, bufc));
2418   }
2419   PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0));
2420   PetscFunctionReturn(PETSC_SUCCESS);
2421 }
2422 
2423 /*@C
2424   MatSetValuesBlockedLocal - Inserts or adds values into certain locations of a matrix,
2425   using a local ordering of the nodes a block at a time.
2426 
2427   Not Collective
2428 
2429   Input Parameters:
2430 + mat  - the matrix
2431 . nrow - number of rows
2432 . irow - the row local indices
2433 . ncol - number of columns
2434 . icol - the column local indices
2435 . y    - a logically two-dimensional array of values
2436 - addv - either `ADD_VALUES` to add values to any existing entries, or `INSERT_VALUES` to replace existing entries with new values
2437 
2438   Level: intermediate
2439 
2440   Notes:
2441   If you create the matrix yourself (that is not with a call to `DMCreateMatrix()`) then you MUST call `MatSetBlockSize()` and `MatSetLocalToGlobalMapping()`
2442   before using this routineBefore calling `MatSetValuesLocal()`, the user must first set the
2443 
2444   Calls to `MatSetValuesBlockedLocal()` with the `INSERT_VALUES` and `ADD_VALUES`
2445   options cannot be mixed without intervening calls to the assembly
2446   routines.
2447 
2448   These values may be cached, so `MatAssemblyBegin()` and `MatAssemblyEnd()`
2449   MUST be called after all calls to `MatSetValuesBlockedLocal()` have been completed.
2450 
2451   Developer Note:
2452   This is labeled with C so does not automatically generate Fortran stubs and interfaces
2453   because it requires multiple Fortran interfaces depending on which arguments are scalar or arrays.
2454 
2455 .seealso: [](ch_matrices), `Mat`, `MatSetBlockSize()`, `MatSetLocalToGlobalMapping()`, `MatAssemblyBegin()`, `MatAssemblyEnd()`,
2456           `MatSetValuesLocal()`, `MatSetValuesBlocked()`
2457 @*/
2458 PetscErrorCode MatSetValuesBlockedLocal(Mat mat, PetscInt nrow, const PetscInt irow[], PetscInt ncol, const PetscInt icol[], const PetscScalar y[], InsertMode addv)
2459 {
2460   PetscFunctionBeginHot;
2461   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
2462   PetscValidType(mat, 1);
2463   MatCheckPreallocated(mat, 1);
2464   if (!nrow || !ncol) PetscFunctionReturn(PETSC_SUCCESS); /* no values to insert */
2465   PetscAssertPointer(irow, 3);
2466   PetscAssertPointer(icol, 5);
2467   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
2468   else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values");
2469   if (PetscDefined(USE_DEBUG)) {
2470     PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
2471     PetscCheck(mat->ops->setvaluesblockedlocal || mat->ops->setvaluesblocked || mat->ops->setvalueslocal || mat->ops->setvalues, PETSC_COMM_SELF, PETSC_ERR_SUP, "Mat type %s", ((PetscObject)mat)->type_name);
2472   }
2473 
2474   if (mat->assembled) {
2475     mat->was_assembled = PETSC_TRUE;
2476     mat->assembled     = PETSC_FALSE;
2477   }
2478   if (PetscUnlikelyDebug(mat->rmap->mapping)) { /* Condition on the mapping existing, because MatSetValuesBlockedLocal_IS does not require it to be set. */
2479     PetscInt irbs, rbs;
2480     PetscCall(MatGetBlockSizes(mat, &rbs, NULL));
2481     PetscCall(ISLocalToGlobalMappingGetBlockSize(mat->rmap->mapping, &irbs));
2482     PetscCheck(rbs == irbs, PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "Different row block sizes! mat %" PetscInt_FMT ", row l2g map %" PetscInt_FMT, rbs, irbs);
2483   }
2484   if (PetscUnlikelyDebug(mat->cmap->mapping)) {
2485     PetscInt icbs, cbs;
2486     PetscCall(MatGetBlockSizes(mat, NULL, &cbs));
2487     PetscCall(ISLocalToGlobalMappingGetBlockSize(mat->cmap->mapping, &icbs));
2488     PetscCheck(cbs == icbs, PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "Different col block sizes! mat %" PetscInt_FMT ", col l2g map %" PetscInt_FMT, cbs, icbs);
2489   }
2490   PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0));
2491   if (mat->ops->setvaluesblockedlocal) PetscUseTypeMethod(mat, setvaluesblockedlocal, nrow, irow, ncol, icol, y, addv);
2492   else {
2493     PetscInt        buf[8192], *bufr = NULL, *bufc = NULL;
2494     const PetscInt *irowm, *icolm;
2495 
2496     if ((!mat->rmap->mapping && !mat->cmap->mapping) || (nrow + ncol) <= ((PetscInt)PETSC_STATIC_ARRAY_LENGTH(buf))) {
2497       bufr  = buf;
2498       bufc  = buf + nrow;
2499       irowm = bufr;
2500       icolm = bufc;
2501     } else {
2502       PetscCall(PetscMalloc2(nrow, &bufr, ncol, &bufc));
2503       irowm = bufr;
2504       icolm = bufc;
2505     }
2506     if (mat->rmap->mapping) PetscCall(ISLocalToGlobalMappingApplyBlock(mat->rmap->mapping, nrow, irow, bufr));
2507     else irowm = irow;
2508     if (mat->cmap->mapping) {
2509       if (mat->cmap->mapping != mat->rmap->mapping || ncol != nrow || icol != irow) {
2510         PetscCall(ISLocalToGlobalMappingApplyBlock(mat->cmap->mapping, ncol, icol, bufc));
2511       } else icolm = irowm;
2512     } else icolm = icol;
2513     PetscCall(MatSetValuesBlocked(mat, nrow, irowm, ncol, icolm, y, addv));
2514     if (bufr != buf) PetscCall(PetscFree2(bufr, bufc));
2515   }
2516   PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0));
2517   PetscFunctionReturn(PETSC_SUCCESS);
2518 }
2519 
2520 /*@
2521   MatMultDiagonalBlock - Computes the matrix-vector product, $y = Dx$. Where `D` is defined by the inode or block structure of the diagonal
2522 
2523   Collective
2524 
2525   Input Parameters:
2526 + mat - the matrix
2527 - x   - the vector to be multiplied
2528 
2529   Output Parameter:
2530 . y - the result
2531 
2532   Level: developer
2533 
2534   Note:
2535   The vectors `x` and `y` cannot be the same.  I.e., one cannot
2536   call `MatMultDiagonalBlock`(A,y,y).
2537 
2538 .seealso: [](ch_matrices), `Mat`, `MatMult()`, `MatMultTranspose()`, `MatMultAdd()`, `MatMultTransposeAdd()`
2539 @*/
2540 PetscErrorCode MatMultDiagonalBlock(Mat mat, Vec x, Vec y)
2541 {
2542   PetscFunctionBegin;
2543   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
2544   PetscValidType(mat, 1);
2545   PetscValidHeaderSpecific(x, VEC_CLASSID, 2);
2546   PetscValidHeaderSpecific(y, VEC_CLASSID, 3);
2547 
2548   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
2549   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
2550   PetscCheck(x != y, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "x and y must be different vectors");
2551   MatCheckPreallocated(mat, 1);
2552 
2553   PetscUseTypeMethod(mat, multdiagonalblock, x, y);
2554   PetscCall(PetscObjectStateIncrease((PetscObject)y));
2555   PetscFunctionReturn(PETSC_SUCCESS);
2556 }
2557 
2558 /*@
2559   MatMult - Computes the matrix-vector product, $y = Ax$.
2560 
2561   Neighbor-wise Collective
2562 
2563   Input Parameters:
2564 + mat - the matrix
2565 - x   - the vector to be multiplied
2566 
2567   Output Parameter:
2568 . y - the result
2569 
2570   Level: beginner
2571 
2572   Note:
2573   The vectors `x` and `y` cannot be the same.  I.e., one cannot
2574   call `MatMult`(A,y,y).
2575 
2576 .seealso: [](ch_matrices), `Mat`, `MatMultTranspose()`, `MatMultAdd()`, `MatMultTransposeAdd()`
2577 @*/
2578 PetscErrorCode MatMult(Mat mat, Vec x, Vec y)
2579 {
2580   PetscFunctionBegin;
2581   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
2582   PetscValidType(mat, 1);
2583   PetscValidHeaderSpecific(x, VEC_CLASSID, 2);
2584   VecCheckAssembled(x);
2585   PetscValidHeaderSpecific(y, VEC_CLASSID, 3);
2586   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
2587   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
2588   PetscCheck(x != y, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "x and y must be different vectors");
2589   PetscCheck(mat->cmap->N == x->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec x: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->cmap->N, x->map->N);
2590   PetscCheck(mat->rmap->N == y->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec y: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->N, y->map->N);
2591   PetscCheck(mat->cmap->n == x->map->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Mat mat,Vec x: local dim %" PetscInt_FMT " %" PetscInt_FMT, mat->cmap->n, x->map->n);
2592   PetscCheck(mat->rmap->n == y->map->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Mat mat,Vec y: local dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->n, y->map->n);
2593   PetscCall(VecSetErrorIfLocked(y, 3));
2594   if (mat->erroriffailure) PetscCall(VecValidValues_Internal(x, 2, PETSC_TRUE));
2595   MatCheckPreallocated(mat, 1);
2596 
2597   PetscCall(VecLockReadPush(x));
2598   PetscCall(PetscLogEventBegin(MAT_Mult, mat, x, y, 0));
2599   PetscUseTypeMethod(mat, mult, x, y);
2600   PetscCall(PetscLogEventEnd(MAT_Mult, mat, x, y, 0));
2601   if (mat->erroriffailure) PetscCall(VecValidValues_Internal(y, 3, PETSC_FALSE));
2602   PetscCall(VecLockReadPop(x));
2603   PetscFunctionReturn(PETSC_SUCCESS);
2604 }
2605 
2606 /*@
2607   MatMultTranspose - Computes matrix transpose times a vector $y = A^T * x$.
2608 
2609   Neighbor-wise Collective
2610 
2611   Input Parameters:
2612 + mat - the matrix
2613 - x   - the vector to be multiplied
2614 
2615   Output Parameter:
2616 . y - the result
2617 
2618   Level: beginner
2619 
2620   Notes:
2621   The vectors `x` and `y` cannot be the same.  I.e., one cannot
2622   call `MatMultTranspose`(A,y,y).
2623 
2624   For complex numbers this does NOT compute the Hermitian (complex conjugate) transpose multiple,
2625   use `MatMultHermitianTranspose()`
2626 
2627 .seealso: [](ch_matrices), `Mat`, `MatMult()`, `MatMultAdd()`, `MatMultTransposeAdd()`, `MatMultHermitianTranspose()`, `MatTranspose()`
2628 @*/
2629 PetscErrorCode MatMultTranspose(Mat mat, Vec x, Vec y)
2630 {
2631   PetscErrorCode (*op)(Mat, Vec, Vec) = NULL;
2632 
2633   PetscFunctionBegin;
2634   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
2635   PetscValidType(mat, 1);
2636   PetscValidHeaderSpecific(x, VEC_CLASSID, 2);
2637   VecCheckAssembled(x);
2638   PetscValidHeaderSpecific(y, VEC_CLASSID, 3);
2639 
2640   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
2641   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
2642   PetscCheck(x != y, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "x and y must be different vectors");
2643   PetscCheck(mat->cmap->N == y->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec y: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->cmap->N, y->map->N);
2644   PetscCheck(mat->rmap->N == x->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec x: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->N, x->map->N);
2645   PetscCheck(mat->cmap->n == y->map->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Mat mat,Vec y: local dim %" PetscInt_FMT " %" PetscInt_FMT, mat->cmap->n, y->map->n);
2646   PetscCheck(mat->rmap->n == x->map->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Mat mat,Vec x: local dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->n, x->map->n);
2647   if (mat->erroriffailure) PetscCall(VecValidValues_Internal(x, 2, PETSC_TRUE));
2648   MatCheckPreallocated(mat, 1);
2649 
2650   if (!mat->ops->multtranspose) {
2651     if (mat->symmetric == PETSC_BOOL3_TRUE && mat->ops->mult) op = mat->ops->mult;
2652     PetscCheck(op, PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "Matrix type %s does not have a multiply transpose defined or is symmetric and does not have a multiply defined", ((PetscObject)mat)->type_name);
2653   } else op = mat->ops->multtranspose;
2654   PetscCall(PetscLogEventBegin(MAT_MultTranspose, mat, x, y, 0));
2655   PetscCall(VecLockReadPush(x));
2656   PetscCall((*op)(mat, x, y));
2657   PetscCall(VecLockReadPop(x));
2658   PetscCall(PetscLogEventEnd(MAT_MultTranspose, mat, x, y, 0));
2659   PetscCall(PetscObjectStateIncrease((PetscObject)y));
2660   if (mat->erroriffailure) PetscCall(VecValidValues_Internal(y, 3, PETSC_FALSE));
2661   PetscFunctionReturn(PETSC_SUCCESS);
2662 }
2663 
2664 /*@
2665   MatMultHermitianTranspose - Computes matrix Hermitian-transpose times a vector $y = A^H * x$.
2666 
2667   Neighbor-wise Collective
2668 
2669   Input Parameters:
2670 + mat - the matrix
2671 - x   - the vector to be multiplied
2672 
2673   Output Parameter:
2674 . y - the result
2675 
2676   Level: beginner
2677 
2678   Notes:
2679   The vectors `x` and `y` cannot be the same.  I.e., one cannot
2680   call `MatMultHermitianTranspose`(A,y,y).
2681 
2682   Also called the conjugate transpose, complex conjugate transpose, or adjoint.
2683 
2684   For real numbers `MatMultTranspose()` and `MatMultHermitianTranspose()` are identical.
2685 
2686 .seealso: [](ch_matrices), `Mat`, `MatMult()`, `MatMultAdd()`, `MatMultHermitianTransposeAdd()`, `MatMultTranspose()`
2687 @*/
2688 PetscErrorCode MatMultHermitianTranspose(Mat mat, Vec x, Vec y)
2689 {
2690   PetscFunctionBegin;
2691   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
2692   PetscValidType(mat, 1);
2693   PetscValidHeaderSpecific(x, VEC_CLASSID, 2);
2694   PetscValidHeaderSpecific(y, VEC_CLASSID, 3);
2695 
2696   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
2697   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
2698   PetscCheck(x != y, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "x and y must be different vectors");
2699   PetscCheck(mat->cmap->N == y->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec y: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->cmap->N, y->map->N);
2700   PetscCheck(mat->rmap->N == x->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec x: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->N, x->map->N);
2701   PetscCheck(mat->cmap->n == y->map->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Mat mat,Vec y: local dim %" PetscInt_FMT " %" PetscInt_FMT, mat->cmap->n, y->map->n);
2702   PetscCheck(mat->rmap->n == x->map->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Mat mat,Vec x: local dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->n, x->map->n);
2703   MatCheckPreallocated(mat, 1);
2704 
2705   PetscCall(PetscLogEventBegin(MAT_MultHermitianTranspose, mat, x, y, 0));
2706 #if defined(PETSC_USE_COMPLEX)
2707   if (mat->ops->multhermitiantranspose || (mat->hermitian == PETSC_BOOL3_TRUE && mat->ops->mult)) {
2708     PetscCall(VecLockReadPush(x));
2709     if (mat->ops->multhermitiantranspose) PetscUseTypeMethod(mat, multhermitiantranspose, x, y);
2710     else PetscUseTypeMethod(mat, mult, x, y);
2711     PetscCall(VecLockReadPop(x));
2712   } else {
2713     Vec w;
2714     PetscCall(VecDuplicate(x, &w));
2715     PetscCall(VecCopy(x, w));
2716     PetscCall(VecConjugate(w));
2717     PetscCall(MatMultTranspose(mat, w, y));
2718     PetscCall(VecDestroy(&w));
2719     PetscCall(VecConjugate(y));
2720   }
2721   PetscCall(PetscObjectStateIncrease((PetscObject)y));
2722 #else
2723   PetscCall(MatMultTranspose(mat, x, y));
2724 #endif
2725   PetscCall(PetscLogEventEnd(MAT_MultHermitianTranspose, mat, x, y, 0));
2726   PetscFunctionReturn(PETSC_SUCCESS);
2727 }
2728 
2729 /*@
2730   MatMultAdd -  Computes $v3 = v2 + A * v1$.
2731 
2732   Neighbor-wise Collective
2733 
2734   Input Parameters:
2735 + mat - the matrix
2736 . v1  - the vector to be multiplied by `mat`
2737 - v2  - the vector to be added to the result
2738 
2739   Output Parameter:
2740 . v3 - the result
2741 
2742   Level: beginner
2743 
2744   Note:
2745   The vectors `v1` and `v3` cannot be the same.  I.e., one cannot
2746   call `MatMultAdd`(A,v1,v2,v1).
2747 
2748 .seealso: [](ch_matrices), `Mat`, `MatMultTranspose()`, `MatMult()`, `MatMultTransposeAdd()`
2749 @*/
2750 PetscErrorCode MatMultAdd(Mat mat, Vec v1, Vec v2, Vec v3)
2751 {
2752   PetscFunctionBegin;
2753   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
2754   PetscValidType(mat, 1);
2755   PetscValidHeaderSpecific(v1, VEC_CLASSID, 2);
2756   PetscValidHeaderSpecific(v2, VEC_CLASSID, 3);
2757   PetscValidHeaderSpecific(v3, VEC_CLASSID, 4);
2758 
2759   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
2760   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
2761   PetscCheck(mat->cmap->N == v1->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec v1: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->cmap->N, v1->map->N);
2762   /* PetscCheck(mat->rmap->N == v2->map->N,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Mat mat,Vec v2: global dim %" PetscInt_FMT " %" PetscInt_FMT,mat->rmap->N,v2->map->N);
2763      PetscCheck(mat->rmap->N == v3->map->N,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Mat mat,Vec v3: global dim %" PetscInt_FMT " %" PetscInt_FMT,mat->rmap->N,v3->map->N); */
2764   PetscCheck(mat->rmap->n == v3->map->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Mat mat,Vec v3: local dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->n, v3->map->n);
2765   PetscCheck(mat->rmap->n == v2->map->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Mat mat,Vec v2: local dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->n, v2->map->n);
2766   PetscCheck(v1 != v3, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_IDN, "v1 and v3 must be different vectors");
2767   MatCheckPreallocated(mat, 1);
2768 
2769   PetscCall(PetscLogEventBegin(MAT_MultAdd, mat, v1, v2, v3));
2770   PetscCall(VecLockReadPush(v1));
2771   PetscUseTypeMethod(mat, multadd, v1, v2, v3);
2772   PetscCall(VecLockReadPop(v1));
2773   PetscCall(PetscLogEventEnd(MAT_MultAdd, mat, v1, v2, v3));
2774   PetscCall(PetscObjectStateIncrease((PetscObject)v3));
2775   PetscFunctionReturn(PETSC_SUCCESS);
2776 }
2777 
2778 /*@
2779   MatMultTransposeAdd - Computes $v3 = v2 + A^T * v1$.
2780 
2781   Neighbor-wise Collective
2782 
2783   Input Parameters:
2784 + mat - the matrix
2785 . v1  - the vector to be multiplied by the transpose of the matrix
2786 - v2  - the vector to be added to the result
2787 
2788   Output Parameter:
2789 . v3 - the result
2790 
2791   Level: beginner
2792 
2793   Note:
2794   The vectors `v1` and `v3` cannot be the same.  I.e., one cannot
2795   call `MatMultTransposeAdd`(A,v1,v2,v1).
2796 
2797 .seealso: [](ch_matrices), `Mat`, `MatMultTranspose()`, `MatMultAdd()`, `MatMult()`
2798 @*/
2799 PetscErrorCode MatMultTransposeAdd(Mat mat, Vec v1, Vec v2, Vec v3)
2800 {
2801   PetscErrorCode (*op)(Mat, Vec, Vec, Vec) = (!mat->ops->multtransposeadd && mat->symmetric) ? mat->ops->multadd : mat->ops->multtransposeadd;
2802 
2803   PetscFunctionBegin;
2804   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
2805   PetscValidType(mat, 1);
2806   PetscValidHeaderSpecific(v1, VEC_CLASSID, 2);
2807   PetscValidHeaderSpecific(v2, VEC_CLASSID, 3);
2808   PetscValidHeaderSpecific(v3, VEC_CLASSID, 4);
2809 
2810   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
2811   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
2812   PetscCheck(mat->rmap->N == v1->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec v1: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->N, v1->map->N);
2813   PetscCheck(mat->cmap->N == v2->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec v2: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->cmap->N, v2->map->N);
2814   PetscCheck(mat->cmap->N == v3->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec v3: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->cmap->N, v3->map->N);
2815   PetscCheck(v1 != v3, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_IDN, "v1 and v3 must be different vectors");
2816   PetscCheck(op, PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "Mat type %s", ((PetscObject)mat)->type_name);
2817   MatCheckPreallocated(mat, 1);
2818 
2819   PetscCall(PetscLogEventBegin(MAT_MultTransposeAdd, mat, v1, v2, v3));
2820   PetscCall(VecLockReadPush(v1));
2821   PetscCall((*op)(mat, v1, v2, v3));
2822   PetscCall(VecLockReadPop(v1));
2823   PetscCall(PetscLogEventEnd(MAT_MultTransposeAdd, mat, v1, v2, v3));
2824   PetscCall(PetscObjectStateIncrease((PetscObject)v3));
2825   PetscFunctionReturn(PETSC_SUCCESS);
2826 }
2827 
2828 /*@
2829   MatMultHermitianTransposeAdd - Computes $v3 = v2 + A^H * v1$.
2830 
2831   Neighbor-wise Collective
2832 
2833   Input Parameters:
2834 + mat - the matrix
2835 . v1  - the vector to be multiplied by the Hermitian transpose
2836 - v2  - the vector to be added to the result
2837 
2838   Output Parameter:
2839 . v3 - the result
2840 
2841   Level: beginner
2842 
2843   Note:
2844   The vectors `v1` and `v3` cannot be the same.  I.e., one cannot
2845   call `MatMultHermitianTransposeAdd`(A,v1,v2,v1).
2846 
2847 .seealso: [](ch_matrices), `Mat`, `MatMultHermitianTranspose()`, `MatMultTranspose()`, `MatMultAdd()`, `MatMult()`
2848 @*/
2849 PetscErrorCode MatMultHermitianTransposeAdd(Mat mat, Vec v1, Vec v2, Vec v3)
2850 {
2851   PetscFunctionBegin;
2852   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
2853   PetscValidType(mat, 1);
2854   PetscValidHeaderSpecific(v1, VEC_CLASSID, 2);
2855   PetscValidHeaderSpecific(v2, VEC_CLASSID, 3);
2856   PetscValidHeaderSpecific(v3, VEC_CLASSID, 4);
2857 
2858   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
2859   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
2860   PetscCheck(v1 != v3, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_IDN, "v1 and v3 must be different vectors");
2861   PetscCheck(mat->rmap->N == v1->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec v1: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->N, v1->map->N);
2862   PetscCheck(mat->cmap->N == v2->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec v2: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->cmap->N, v2->map->N);
2863   PetscCheck(mat->cmap->N == v3->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec v3: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->cmap->N, v3->map->N);
2864   MatCheckPreallocated(mat, 1);
2865 
2866   PetscCall(PetscLogEventBegin(MAT_MultHermitianTransposeAdd, mat, v1, v2, v3));
2867   PetscCall(VecLockReadPush(v1));
2868   if (mat->ops->multhermitiantransposeadd) PetscUseTypeMethod(mat, multhermitiantransposeadd, v1, v2, v3);
2869   else {
2870     Vec w, z;
2871     PetscCall(VecDuplicate(v1, &w));
2872     PetscCall(VecCopy(v1, w));
2873     PetscCall(VecConjugate(w));
2874     PetscCall(VecDuplicate(v3, &z));
2875     PetscCall(MatMultTranspose(mat, w, z));
2876     PetscCall(VecDestroy(&w));
2877     PetscCall(VecConjugate(z));
2878     if (v2 != v3) {
2879       PetscCall(VecWAXPY(v3, 1.0, v2, z));
2880     } else {
2881       PetscCall(VecAXPY(v3, 1.0, z));
2882     }
2883     PetscCall(VecDestroy(&z));
2884   }
2885   PetscCall(VecLockReadPop(v1));
2886   PetscCall(PetscLogEventEnd(MAT_MultHermitianTransposeAdd, mat, v1, v2, v3));
2887   PetscCall(PetscObjectStateIncrease((PetscObject)v3));
2888   PetscFunctionReturn(PETSC_SUCCESS);
2889 }
2890 
2891 /*@C
2892   MatGetFactorType - gets the type of factorization a matrix is
2893 
2894   Not Collective
2895 
2896   Input Parameter:
2897 . mat - the matrix
2898 
2899   Output Parameter:
2900 . t - the type, one of `MAT_FACTOR_NONE`, `MAT_FACTOR_LU`, `MAT_FACTOR_CHOLESKY`, `MAT_FACTOR_ILU`, `MAT_FACTOR_ICC,MAT_FACTOR_ILUDT`, `MAT_FACTOR_QR`
2901 
2902   Level: intermediate
2903 
2904 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatFactorType`, `MatGetFactor()`, `MatSetFactorType()`, `MAT_FACTOR_NONE`, `MAT_FACTOR_LU`, `MAT_FACTOR_CHOLESKY`, `MAT_FACTOR_ILU`,
2905           `MAT_FACTOR_ICC`,`MAT_FACTOR_ILUDT`, `MAT_FACTOR_QR`
2906 @*/
2907 PetscErrorCode MatGetFactorType(Mat mat, MatFactorType *t)
2908 {
2909   PetscFunctionBegin;
2910   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
2911   PetscValidType(mat, 1);
2912   PetscAssertPointer(t, 2);
2913   *t = mat->factortype;
2914   PetscFunctionReturn(PETSC_SUCCESS);
2915 }
2916 
2917 /*@C
2918   MatSetFactorType - sets the type of factorization a matrix is
2919 
2920   Logically Collective
2921 
2922   Input Parameters:
2923 + mat - the matrix
2924 - t   - the type, one of `MAT_FACTOR_NONE`, `MAT_FACTOR_LU`, `MAT_FACTOR_CHOLESKY`, `MAT_FACTOR_ILU`, `MAT_FACTOR_ICC,MAT_FACTOR_ILUDT`, `MAT_FACTOR_QR`
2925 
2926   Level: intermediate
2927 
2928 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatFactorType`, `MatGetFactor()`, `MatGetFactorType()`, `MAT_FACTOR_NONE`, `MAT_FACTOR_LU`, `MAT_FACTOR_CHOLESKY`, `MAT_FACTOR_ILU`,
2929           `MAT_FACTOR_ICC`,`MAT_FACTOR_ILUDT`, `MAT_FACTOR_QR`
2930 @*/
2931 PetscErrorCode MatSetFactorType(Mat mat, MatFactorType t)
2932 {
2933   PetscFunctionBegin;
2934   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
2935   PetscValidType(mat, 1);
2936   mat->factortype = t;
2937   PetscFunctionReturn(PETSC_SUCCESS);
2938 }
2939 
2940 /*@C
2941   MatGetInfo - Returns information about matrix storage (number of
2942   nonzeros, memory, etc.).
2943 
2944   Collective if `MAT_GLOBAL_MAX` or `MAT_GLOBAL_SUM` is used as the flag
2945 
2946   Input Parameters:
2947 + mat  - the matrix
2948 - flag - flag indicating the type of parameters to be returned (`MAT_LOCAL` - local matrix, `MAT_GLOBAL_MAX` - maximum over all processors, `MAT_GLOBAL_SUM` - sum over all processors)
2949 
2950   Output Parameter:
2951 . info - matrix information context
2952 
2953   Options Database Key:
2954 . -mat_view ::ascii_info - print matrix info to `PETSC_STDOUT`
2955 
2956   Notes:
2957   The `MatInfo` context contains a variety of matrix data, including
2958   number of nonzeros allocated and used, number of mallocs during
2959   matrix assembly, etc.  Additional information for factored matrices
2960   is provided (such as the fill ratio, number of mallocs during
2961   factorization, etc.).
2962 
2963   Example:
2964   See the file ${PETSC_DIR}/include/petscmat.h for a complete list of
2965   data within the MatInfo context.  For example,
2966 .vb
2967       MatInfo info;
2968       Mat     A;
2969       double  mal, nz_a, nz_u;
2970 
2971       MatGetInfo(A, MAT_LOCAL, &info);
2972       mal  = info.mallocs;
2973       nz_a = info.nz_allocated;
2974 .ve
2975 
2976   Fortran users should declare info as a double precision
2977   array of dimension `MAT_INFO_SIZE`, and then extract the parameters
2978   of interest.  See the file ${PETSC_DIR}/include/petsc/finclude/petscmat.h
2979   a complete list of parameter names.
2980 .vb
2981       double  precision info(MAT_INFO_SIZE)
2982       double  precision mal, nz_a
2983       Mat     A
2984       integer ierr
2985 
2986       call MatGetInfo(A, MAT_LOCAL, info, ierr)
2987       mal = info(MAT_INFO_MALLOCS)
2988       nz_a = info(MAT_INFO_NZ_ALLOCATED)
2989 .ve
2990 
2991   Level: intermediate
2992 
2993   Developer Note:
2994   The Fortran interface is not autogenerated as the
2995   interface definition cannot be generated correctly [due to `MatInfo` argument]
2996 
2997 .seealso: [](ch_matrices), `Mat`, `MatInfo`, `MatStashGetInfo()`
2998 @*/
2999 PetscErrorCode MatGetInfo(Mat mat, MatInfoType flag, MatInfo *info)
3000 {
3001   PetscFunctionBegin;
3002   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
3003   PetscValidType(mat, 1);
3004   PetscAssertPointer(info, 3);
3005   MatCheckPreallocated(mat, 1);
3006   PetscUseTypeMethod(mat, getinfo, flag, info);
3007   PetscFunctionReturn(PETSC_SUCCESS);
3008 }
3009 
3010 /*
3011    This is used by external packages where it is not easy to get the info from the actual
3012    matrix factorization.
3013 */
3014 PetscErrorCode MatGetInfo_External(Mat A, MatInfoType flag, MatInfo *info)
3015 {
3016   PetscFunctionBegin;
3017   PetscCall(PetscMemzero(info, sizeof(MatInfo)));
3018   PetscFunctionReturn(PETSC_SUCCESS);
3019 }
3020 
3021 /*@C
3022   MatLUFactor - Performs in-place LU factorization of matrix.
3023 
3024   Collective
3025 
3026   Input Parameters:
3027 + mat  - the matrix
3028 . row  - row permutation
3029 . col  - column permutation
3030 - info - options for factorization, includes
3031 .vb
3032           fill - expected fill as ratio of original fill.
3033           dtcol - pivot tolerance (0 no pivot, 1 full column pivoting)
3034                    Run with the option -info to determine an optimal value to use
3035 .ve
3036 
3037   Level: developer
3038 
3039   Notes:
3040   Most users should employ the `KSP` interface for linear solvers
3041   instead of working directly with matrix algebra routines such as this.
3042   See, e.g., `KSPCreate()`.
3043 
3044   This changes the state of the matrix to a factored matrix; it cannot be used
3045   for example with `MatSetValues()` unless one first calls `MatSetUnfactored()`.
3046 
3047   This is really in-place only for dense matrices, the preferred approach is to use `MatGetFactor()`, `MatLUFactorSymbolic()`, and `MatLUFactorNumeric()`
3048   when not using `KSP`.
3049 
3050   Developer Note:
3051   The Fortran interface is not autogenerated as the
3052   interface definition cannot be generated correctly [due to `MatFactorInfo`]
3053 
3054 .seealso: [](ch_matrices), [Matrix Factorization](sec_matfactor), `Mat`, `MatFactorType`, `MatLUFactorSymbolic()`, `MatLUFactorNumeric()`, `MatCholeskyFactor()`,
3055           `MatGetOrdering()`, `MatSetUnfactored()`, `MatFactorInfo`, `MatGetFactor()`
3056 @*/
3057 PetscErrorCode MatLUFactor(Mat mat, IS row, IS col, const MatFactorInfo *info)
3058 {
3059   MatFactorInfo tinfo;
3060 
3061   PetscFunctionBegin;
3062   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
3063   if (row) PetscValidHeaderSpecific(row, IS_CLASSID, 2);
3064   if (col) PetscValidHeaderSpecific(col, IS_CLASSID, 3);
3065   if (info) PetscAssertPointer(info, 4);
3066   PetscValidType(mat, 1);
3067   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
3068   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
3069   MatCheckPreallocated(mat, 1);
3070   if (!info) {
3071     PetscCall(MatFactorInfoInitialize(&tinfo));
3072     info = &tinfo;
3073   }
3074 
3075   PetscCall(PetscLogEventBegin(MAT_LUFactor, mat, row, col, 0));
3076   PetscUseTypeMethod(mat, lufactor, row, col, info);
3077   PetscCall(PetscLogEventEnd(MAT_LUFactor, mat, row, col, 0));
3078   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
3079   PetscFunctionReturn(PETSC_SUCCESS);
3080 }
3081 
3082 /*@C
3083   MatILUFactor - Performs in-place ILU factorization of matrix.
3084 
3085   Collective
3086 
3087   Input Parameters:
3088 + mat  - the matrix
3089 . row  - row permutation
3090 . col  - column permutation
3091 - info - structure containing
3092 .vb
3093       levels - number of levels of fill.
3094       expected fill - as ratio of original fill.
3095       1 or 0 - indicating force fill on diagonal (improves robustness for matrices
3096                 missing diagonal entries)
3097 .ve
3098 
3099   Level: developer
3100 
3101   Notes:
3102   Most users should employ the `KSP` interface for linear solvers
3103   instead of working directly with matrix algebra routines such as this.
3104   See, e.g., `KSPCreate()`.
3105 
3106   Probably really in-place only when level of fill is zero, otherwise allocates
3107   new space to store factored matrix and deletes previous memory. The preferred approach is to use `MatGetFactor()`, `MatILUFactorSymbolic()`, and `MatILUFactorNumeric()`
3108   when not using `KSP`.
3109 
3110   Developer Note:
3111   The Fortran interface is not autogenerated as the
3112   interface definition cannot be generated correctly [due to MatFactorInfo]
3113 
3114 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatILUFactorSymbolic()`, `MatLUFactorNumeric()`, `MatCholeskyFactor()`, `MatFactorInfo`
3115 @*/
3116 PetscErrorCode MatILUFactor(Mat mat, IS row, IS col, const MatFactorInfo *info)
3117 {
3118   PetscFunctionBegin;
3119   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
3120   if (row) PetscValidHeaderSpecific(row, IS_CLASSID, 2);
3121   if (col) PetscValidHeaderSpecific(col, IS_CLASSID, 3);
3122   PetscAssertPointer(info, 4);
3123   PetscValidType(mat, 1);
3124   PetscCheck(mat->rmap->N == mat->cmap->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONG, "matrix must be square");
3125   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
3126   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
3127   MatCheckPreallocated(mat, 1);
3128 
3129   PetscCall(PetscLogEventBegin(MAT_ILUFactor, mat, row, col, 0));
3130   PetscUseTypeMethod(mat, ilufactor, row, col, info);
3131   PetscCall(PetscLogEventEnd(MAT_ILUFactor, mat, row, col, 0));
3132   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
3133   PetscFunctionReturn(PETSC_SUCCESS);
3134 }
3135 
3136 /*@C
3137   MatLUFactorSymbolic - Performs symbolic LU factorization of matrix.
3138   Call this routine before calling `MatLUFactorNumeric()` and after `MatGetFactor()`.
3139 
3140   Collective
3141 
3142   Input Parameters:
3143 + fact - the factor matrix obtained with `MatGetFactor()`
3144 . mat  - the matrix
3145 . row  - the row permutation
3146 . col  - the column permutation
3147 - info - options for factorization, includes
3148 .vb
3149           fill - expected fill as ratio of original fill. Run with the option -info to determine an optimal value to use
3150           dtcol - pivot tolerance (0 no pivot, 1 full column pivoting)
3151 .ve
3152 
3153   Level: developer
3154 
3155   Notes:
3156   See [Matrix Factorization](sec_matfactor) for additional information about factorizations
3157 
3158   Most users should employ the simplified `KSP` interface for linear solvers
3159   instead of working directly with matrix algebra routines such as this.
3160   See, e.g., `KSPCreate()`.
3161 
3162   Developer Note:
3163   The Fortran interface is not autogenerated as the
3164   interface definition cannot be generated correctly [due to `MatFactorInfo`]
3165 
3166 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatLUFactor()`, `MatLUFactorNumeric()`, `MatCholeskyFactor()`, `MatFactorInfo`, `MatFactorInfoInitialize()`
3167 @*/
3168 PetscErrorCode MatLUFactorSymbolic(Mat fact, Mat mat, IS row, IS col, const MatFactorInfo *info)
3169 {
3170   MatFactorInfo tinfo;
3171 
3172   PetscFunctionBegin;
3173   PetscValidHeaderSpecific(fact, MAT_CLASSID, 1);
3174   PetscValidHeaderSpecific(mat, MAT_CLASSID, 2);
3175   if (row) PetscValidHeaderSpecific(row, IS_CLASSID, 3);
3176   if (col) PetscValidHeaderSpecific(col, IS_CLASSID, 4);
3177   if (info) PetscAssertPointer(info, 5);
3178   PetscValidType(fact, 1);
3179   PetscValidType(mat, 2);
3180   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
3181   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
3182   MatCheckPreallocated(mat, 2);
3183   if (!info) {
3184     PetscCall(MatFactorInfoInitialize(&tinfo));
3185     info = &tinfo;
3186   }
3187 
3188   if (!fact->trivialsymbolic) PetscCall(PetscLogEventBegin(MAT_LUFactorSymbolic, mat, row, col, 0));
3189   PetscUseTypeMethod(fact, lufactorsymbolic, mat, row, col, info);
3190   if (!fact->trivialsymbolic) PetscCall(PetscLogEventEnd(MAT_LUFactorSymbolic, mat, row, col, 0));
3191   PetscCall(PetscObjectStateIncrease((PetscObject)fact));
3192   PetscFunctionReturn(PETSC_SUCCESS);
3193 }
3194 
3195 /*@C
3196   MatLUFactorNumeric - Performs numeric LU factorization of a matrix.
3197   Call this routine after first calling `MatLUFactorSymbolic()` and `MatGetFactor()`.
3198 
3199   Collective
3200 
3201   Input Parameters:
3202 + fact - the factor matrix obtained with `MatGetFactor()`
3203 . mat  - the matrix
3204 - info - options for factorization
3205 
3206   Level: developer
3207 
3208   Notes:
3209   See `MatLUFactor()` for in-place factorization.  See
3210   `MatCholeskyFactorNumeric()` for the symmetric, positive definite case.
3211 
3212   Most users should employ the `KSP` interface for linear solvers
3213   instead of working directly with matrix algebra routines such as this.
3214   See, e.g., `KSPCreate()`.
3215 
3216   Developer Note:
3217   The Fortran interface is not autogenerated as the
3218   interface definition cannot be generated correctly [due to `MatFactorInfo`]
3219 
3220 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatFactorInfo`, `MatLUFactorSymbolic()`, `MatLUFactor()`, `MatCholeskyFactor()`
3221 @*/
3222 PetscErrorCode MatLUFactorNumeric(Mat fact, Mat mat, const MatFactorInfo *info)
3223 {
3224   MatFactorInfo tinfo;
3225 
3226   PetscFunctionBegin;
3227   PetscValidHeaderSpecific(fact, MAT_CLASSID, 1);
3228   PetscValidHeaderSpecific(mat, MAT_CLASSID, 2);
3229   PetscValidType(fact, 1);
3230   PetscValidType(mat, 2);
3231   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
3232   PetscCheck(mat->rmap->N == (fact)->rmap->N && mat->cmap->N == (fact)->cmap->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Mat fact: global dimensions are different %" PetscInt_FMT " should = %" PetscInt_FMT " %" PetscInt_FMT " should = %" PetscInt_FMT,
3233              mat->rmap->N, (fact)->rmap->N, mat->cmap->N, (fact)->cmap->N);
3234 
3235   MatCheckPreallocated(mat, 2);
3236   if (!info) {
3237     PetscCall(MatFactorInfoInitialize(&tinfo));
3238     info = &tinfo;
3239   }
3240 
3241   if (!fact->trivialsymbolic) PetscCall(PetscLogEventBegin(MAT_LUFactorNumeric, mat, fact, 0, 0));
3242   else PetscCall(PetscLogEventBegin(MAT_LUFactor, mat, fact, 0, 0));
3243   PetscUseTypeMethod(fact, lufactornumeric, mat, info);
3244   if (!fact->trivialsymbolic) PetscCall(PetscLogEventEnd(MAT_LUFactorNumeric, mat, fact, 0, 0));
3245   else PetscCall(PetscLogEventEnd(MAT_LUFactor, mat, fact, 0, 0));
3246   PetscCall(MatViewFromOptions(fact, NULL, "-mat_factor_view"));
3247   PetscCall(PetscObjectStateIncrease((PetscObject)fact));
3248   PetscFunctionReturn(PETSC_SUCCESS);
3249 }
3250 
3251 /*@C
3252   MatCholeskyFactor - Performs in-place Cholesky factorization of a
3253   symmetric matrix.
3254 
3255   Collective
3256 
3257   Input Parameters:
3258 + mat  - the matrix
3259 . perm - row and column permutations
3260 - info - expected fill as ratio of original fill
3261 
3262   Level: developer
3263 
3264   Notes:
3265   See `MatLUFactor()` for the nonsymmetric case.  See also `MatGetFactor()`,
3266   `MatCholeskyFactorSymbolic()`, and `MatCholeskyFactorNumeric()`.
3267 
3268   Most users should employ the `KSP` interface for linear solvers
3269   instead of working directly with matrix algebra routines such as this.
3270   See, e.g., `KSPCreate()`.
3271 
3272   Developer Note:
3273   The Fortran interface is not autogenerated as the
3274   interface definition cannot be generated correctly [due to `MatFactorInfo`]
3275 
3276 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatFactorInfo`, `MatLUFactor()`, `MatCholeskyFactorSymbolic()`, `MatCholeskyFactorNumeric()`
3277           `MatGetOrdering()`
3278 @*/
3279 PetscErrorCode MatCholeskyFactor(Mat mat, IS perm, const MatFactorInfo *info)
3280 {
3281   MatFactorInfo tinfo;
3282 
3283   PetscFunctionBegin;
3284   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
3285   if (perm) PetscValidHeaderSpecific(perm, IS_CLASSID, 2);
3286   if (info) PetscAssertPointer(info, 3);
3287   PetscValidType(mat, 1);
3288   PetscCheck(mat->rmap->N == mat->cmap->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONG, "Matrix must be square");
3289   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
3290   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
3291   MatCheckPreallocated(mat, 1);
3292   if (!info) {
3293     PetscCall(MatFactorInfoInitialize(&tinfo));
3294     info = &tinfo;
3295   }
3296 
3297   PetscCall(PetscLogEventBegin(MAT_CholeskyFactor, mat, perm, 0, 0));
3298   PetscUseTypeMethod(mat, choleskyfactor, perm, info);
3299   PetscCall(PetscLogEventEnd(MAT_CholeskyFactor, mat, perm, 0, 0));
3300   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
3301   PetscFunctionReturn(PETSC_SUCCESS);
3302 }
3303 
3304 /*@C
3305   MatCholeskyFactorSymbolic - Performs symbolic Cholesky factorization
3306   of a symmetric matrix.
3307 
3308   Collective
3309 
3310   Input Parameters:
3311 + fact - the factor matrix obtained with `MatGetFactor()`
3312 . mat  - the matrix
3313 . perm - row and column permutations
3314 - info - options for factorization, includes
3315 .vb
3316           fill - expected fill as ratio of original fill.
3317           dtcol - pivot tolerance (0 no pivot, 1 full column pivoting)
3318                    Run with the option -info to determine an optimal value to use
3319 .ve
3320 
3321   Level: developer
3322 
3323   Notes:
3324   See `MatLUFactorSymbolic()` for the nonsymmetric case.  See also
3325   `MatCholeskyFactor()` and `MatCholeskyFactorNumeric()`.
3326 
3327   Most users should employ the `KSP` interface for linear solvers
3328   instead of working directly with matrix algebra routines such as this.
3329   See, e.g., `KSPCreate()`.
3330 
3331   Developer Note:
3332   The Fortran interface is not autogenerated as the
3333   interface definition cannot be generated correctly [due to `MatFactorInfo`]
3334 
3335 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatFactorInfo`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatCholeskyFactor()`, `MatCholeskyFactorNumeric()`
3336           `MatGetOrdering()`
3337 @*/
3338 PetscErrorCode MatCholeskyFactorSymbolic(Mat fact, Mat mat, IS perm, const MatFactorInfo *info)
3339 {
3340   MatFactorInfo tinfo;
3341 
3342   PetscFunctionBegin;
3343   PetscValidHeaderSpecific(fact, MAT_CLASSID, 1);
3344   PetscValidHeaderSpecific(mat, MAT_CLASSID, 2);
3345   if (perm) PetscValidHeaderSpecific(perm, IS_CLASSID, 3);
3346   if (info) PetscAssertPointer(info, 4);
3347   PetscValidType(fact, 1);
3348   PetscValidType(mat, 2);
3349   PetscCheck(mat->rmap->N == mat->cmap->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONG, "Matrix must be square");
3350   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
3351   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
3352   MatCheckPreallocated(mat, 2);
3353   if (!info) {
3354     PetscCall(MatFactorInfoInitialize(&tinfo));
3355     info = &tinfo;
3356   }
3357 
3358   if (!fact->trivialsymbolic) PetscCall(PetscLogEventBegin(MAT_CholeskyFactorSymbolic, mat, perm, 0, 0));
3359   PetscUseTypeMethod(fact, choleskyfactorsymbolic, mat, perm, info);
3360   if (!fact->trivialsymbolic) PetscCall(PetscLogEventEnd(MAT_CholeskyFactorSymbolic, mat, perm, 0, 0));
3361   PetscCall(PetscObjectStateIncrease((PetscObject)fact));
3362   PetscFunctionReturn(PETSC_SUCCESS);
3363 }
3364 
3365 /*@C
3366   MatCholeskyFactorNumeric - Performs numeric Cholesky factorization
3367   of a symmetric matrix. Call this routine after first calling `MatGetFactor()` and
3368   `MatCholeskyFactorSymbolic()`.
3369 
3370   Collective
3371 
3372   Input Parameters:
3373 + fact - the factor matrix obtained with `MatGetFactor()`, where the factored values are stored
3374 . mat  - the initial matrix that is to be factored
3375 - info - options for factorization
3376 
3377   Level: developer
3378 
3379   Note:
3380   Most users should employ the `KSP` interface for linear solvers
3381   instead of working directly with matrix algebra routines such as this.
3382   See, e.g., `KSPCreate()`.
3383 
3384   Developer Note:
3385   The Fortran interface is not autogenerated as the
3386   interface definition cannot be generated correctly [due to `MatFactorInfo`]
3387 
3388 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatFactorInfo`, `MatGetFactor()`, `MatCholeskyFactorSymbolic()`, `MatCholeskyFactor()`, `MatLUFactorNumeric()`
3389 @*/
3390 PetscErrorCode MatCholeskyFactorNumeric(Mat fact, Mat mat, const MatFactorInfo *info)
3391 {
3392   MatFactorInfo tinfo;
3393 
3394   PetscFunctionBegin;
3395   PetscValidHeaderSpecific(fact, MAT_CLASSID, 1);
3396   PetscValidHeaderSpecific(mat, MAT_CLASSID, 2);
3397   PetscValidType(fact, 1);
3398   PetscValidType(mat, 2);
3399   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
3400   PetscCheck(mat->rmap->N == (fact)->rmap->N && mat->cmap->N == (fact)->cmap->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Mat fact: global dim %" PetscInt_FMT " should = %" PetscInt_FMT " %" PetscInt_FMT " should = %" PetscInt_FMT,
3401              mat->rmap->N, (fact)->rmap->N, mat->cmap->N, (fact)->cmap->N);
3402   MatCheckPreallocated(mat, 2);
3403   if (!info) {
3404     PetscCall(MatFactorInfoInitialize(&tinfo));
3405     info = &tinfo;
3406   }
3407 
3408   if (!fact->trivialsymbolic) PetscCall(PetscLogEventBegin(MAT_CholeskyFactorNumeric, mat, fact, 0, 0));
3409   else PetscCall(PetscLogEventBegin(MAT_CholeskyFactor, mat, fact, 0, 0));
3410   PetscUseTypeMethod(fact, choleskyfactornumeric, mat, info);
3411   if (!fact->trivialsymbolic) PetscCall(PetscLogEventEnd(MAT_CholeskyFactorNumeric, mat, fact, 0, 0));
3412   else PetscCall(PetscLogEventEnd(MAT_CholeskyFactor, mat, fact, 0, 0));
3413   PetscCall(MatViewFromOptions(fact, NULL, "-mat_factor_view"));
3414   PetscCall(PetscObjectStateIncrease((PetscObject)fact));
3415   PetscFunctionReturn(PETSC_SUCCESS);
3416 }
3417 
3418 /*@
3419   MatQRFactor - Performs in-place QR factorization of matrix.
3420 
3421   Collective
3422 
3423   Input Parameters:
3424 + mat  - the matrix
3425 . col  - column permutation
3426 - info - options for factorization, includes
3427 .vb
3428           fill - expected fill as ratio of original fill.
3429           dtcol - pivot tolerance (0 no pivot, 1 full column pivoting)
3430                    Run with the option -info to determine an optimal value to use
3431 .ve
3432 
3433   Level: developer
3434 
3435   Notes:
3436   Most users should employ the `KSP` interface for linear solvers
3437   instead of working directly with matrix algebra routines such as this.
3438   See, e.g., `KSPCreate()`.
3439 
3440   This changes the state of the matrix to a factored matrix; it cannot be used
3441   for example with `MatSetValues()` unless one first calls `MatSetUnfactored()`.
3442 
3443   Developer Note:
3444   The Fortran interface is not autogenerated as the
3445   interface definition cannot be generated correctly [due to MatFactorInfo]
3446 
3447 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatFactorInfo`, `MatGetFactor()`, `MatQRFactorSymbolic()`, `MatQRFactorNumeric()`, `MatLUFactor()`,
3448           `MatSetUnfactored()`
3449 @*/
3450 PetscErrorCode MatQRFactor(Mat mat, IS col, const MatFactorInfo *info)
3451 {
3452   PetscFunctionBegin;
3453   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
3454   if (col) PetscValidHeaderSpecific(col, IS_CLASSID, 2);
3455   if (info) PetscAssertPointer(info, 3);
3456   PetscValidType(mat, 1);
3457   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
3458   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
3459   MatCheckPreallocated(mat, 1);
3460   PetscCall(PetscLogEventBegin(MAT_QRFactor, mat, col, 0, 0));
3461   PetscUseMethod(mat, "MatQRFactor_C", (Mat, IS, const MatFactorInfo *), (mat, col, info));
3462   PetscCall(PetscLogEventEnd(MAT_QRFactor, mat, col, 0, 0));
3463   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
3464   PetscFunctionReturn(PETSC_SUCCESS);
3465 }
3466 
3467 /*@
3468   MatQRFactorSymbolic - Performs symbolic QR factorization of matrix.
3469   Call this routine after `MatGetFactor()` but before calling `MatQRFactorNumeric()`.
3470 
3471   Collective
3472 
3473   Input Parameters:
3474 + fact - the factor matrix obtained with `MatGetFactor()`
3475 . mat  - the matrix
3476 . col  - column permutation
3477 - info - options for factorization, includes
3478 .vb
3479           fill - expected fill as ratio of original fill.
3480           dtcol - pivot tolerance (0 no pivot, 1 full column pivoting)
3481                    Run with the option -info to determine an optimal value to use
3482 .ve
3483 
3484   Level: developer
3485 
3486   Note:
3487   Most users should employ the `KSP` interface for linear solvers
3488   instead of working directly with matrix algebra routines such as this.
3489   See, e.g., `KSPCreate()`.
3490 
3491   Developer Note:
3492   The Fortran interface is not autogenerated as the
3493   interface definition cannot be generated correctly [due to `MatFactorInfo`]
3494 
3495 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatFactorInfo`, `MatQRFactor()`, `MatQRFactorNumeric()`, `MatLUFactor()`, `MatFactorInfoInitialize()`
3496 @*/
3497 PetscErrorCode MatQRFactorSymbolic(Mat fact, Mat mat, IS col, const MatFactorInfo *info)
3498 {
3499   MatFactorInfo tinfo;
3500 
3501   PetscFunctionBegin;
3502   PetscValidHeaderSpecific(fact, MAT_CLASSID, 1);
3503   PetscValidHeaderSpecific(mat, MAT_CLASSID, 2);
3504   if (col) PetscValidHeaderSpecific(col, IS_CLASSID, 3);
3505   if (info) PetscAssertPointer(info, 4);
3506   PetscValidType(fact, 1);
3507   PetscValidType(mat, 2);
3508   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
3509   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
3510   MatCheckPreallocated(mat, 2);
3511   if (!info) {
3512     PetscCall(MatFactorInfoInitialize(&tinfo));
3513     info = &tinfo;
3514   }
3515 
3516   if (!fact->trivialsymbolic) PetscCall(PetscLogEventBegin(MAT_QRFactorSymbolic, fact, mat, col, 0));
3517   PetscUseMethod(fact, "MatQRFactorSymbolic_C", (Mat, Mat, IS, const MatFactorInfo *), (fact, mat, col, info));
3518   if (!fact->trivialsymbolic) PetscCall(PetscLogEventEnd(MAT_QRFactorSymbolic, fact, mat, col, 0));
3519   PetscCall(PetscObjectStateIncrease((PetscObject)fact));
3520   PetscFunctionReturn(PETSC_SUCCESS);
3521 }
3522 
3523 /*@
3524   MatQRFactorNumeric - Performs numeric QR factorization of a matrix.
3525   Call this routine after first calling `MatGetFactor()`, and `MatQRFactorSymbolic()`.
3526 
3527   Collective
3528 
3529   Input Parameters:
3530 + fact - the factor matrix obtained with `MatGetFactor()`
3531 . mat  - the matrix
3532 - info - options for factorization
3533 
3534   Level: developer
3535 
3536   Notes:
3537   See `MatQRFactor()` for in-place factorization.
3538 
3539   Most users should employ the `KSP` interface for linear solvers
3540   instead of working directly with matrix algebra routines such as this.
3541   See, e.g., `KSPCreate()`.
3542 
3543   Developer Note:
3544   The Fortran interface is not autogenerated as the
3545   interface definition cannot be generated correctly [due to `MatFactorInfo`]
3546 
3547 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatFactorInfo`, `MatGetFactor()`, `MatQRFactor()`, `MatQRFactorSymbolic()`, `MatLUFactor()`
3548 @*/
3549 PetscErrorCode MatQRFactorNumeric(Mat fact, Mat mat, const MatFactorInfo *info)
3550 {
3551   MatFactorInfo tinfo;
3552 
3553   PetscFunctionBegin;
3554   PetscValidHeaderSpecific(fact, MAT_CLASSID, 1);
3555   PetscValidHeaderSpecific(mat, MAT_CLASSID, 2);
3556   PetscValidType(fact, 1);
3557   PetscValidType(mat, 2);
3558   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
3559   PetscCheck(mat->rmap->N == fact->rmap->N && mat->cmap->N == fact->cmap->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Mat fact: global dimensions are different %" PetscInt_FMT " should = %" PetscInt_FMT " %" PetscInt_FMT " should = %" PetscInt_FMT,
3560              mat->rmap->N, (fact)->rmap->N, mat->cmap->N, (fact)->cmap->N);
3561 
3562   MatCheckPreallocated(mat, 2);
3563   if (!info) {
3564     PetscCall(MatFactorInfoInitialize(&tinfo));
3565     info = &tinfo;
3566   }
3567 
3568   if (!fact->trivialsymbolic) PetscCall(PetscLogEventBegin(MAT_QRFactorNumeric, mat, fact, 0, 0));
3569   else PetscCall(PetscLogEventBegin(MAT_QRFactor, mat, fact, 0, 0));
3570   PetscUseMethod(fact, "MatQRFactorNumeric_C", (Mat, Mat, const MatFactorInfo *), (fact, mat, info));
3571   if (!fact->trivialsymbolic) PetscCall(PetscLogEventEnd(MAT_QRFactorNumeric, mat, fact, 0, 0));
3572   else PetscCall(PetscLogEventEnd(MAT_QRFactor, mat, fact, 0, 0));
3573   PetscCall(MatViewFromOptions(fact, NULL, "-mat_factor_view"));
3574   PetscCall(PetscObjectStateIncrease((PetscObject)fact));
3575   PetscFunctionReturn(PETSC_SUCCESS);
3576 }
3577 
3578 /*@
3579   MatSolve - Solves $A x = b$, given a factored matrix.
3580 
3581   Neighbor-wise Collective
3582 
3583   Input Parameters:
3584 + mat - the factored matrix
3585 - b   - the right-hand-side vector
3586 
3587   Output Parameter:
3588 . x - the result vector
3589 
3590   Level: developer
3591 
3592   Notes:
3593   The vectors `b` and `x` cannot be the same.  I.e., one cannot
3594   call `MatSolve`(A,x,x).
3595 
3596   Most users should employ the `KSP` interface for linear solvers
3597   instead of working directly with matrix algebra routines such as this.
3598   See, e.g., `KSPCreate()`.
3599 
3600 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatLUFactor()`, `MatSolveAdd()`, `MatSolveTranspose()`, `MatSolveTransposeAdd()`
3601 @*/
3602 PetscErrorCode MatSolve(Mat mat, Vec b, Vec x)
3603 {
3604   PetscFunctionBegin;
3605   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
3606   PetscValidType(mat, 1);
3607   PetscValidHeaderSpecific(b, VEC_CLASSID, 2);
3608   PetscValidHeaderSpecific(x, VEC_CLASSID, 3);
3609   PetscCheckSameComm(mat, 1, b, 2);
3610   PetscCheckSameComm(mat, 1, x, 3);
3611   PetscCheck(x != b, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_IDN, "x and b must be different vectors");
3612   PetscCheck(mat->cmap->N == x->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec x: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->cmap->N, x->map->N);
3613   PetscCheck(mat->rmap->N == b->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec b: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->N, b->map->N);
3614   PetscCheck(mat->rmap->n == b->map->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Mat mat,Vec b: local dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->n, b->map->n);
3615   if (!mat->rmap->N && !mat->cmap->N) PetscFunctionReturn(PETSC_SUCCESS);
3616   MatCheckPreallocated(mat, 1);
3617 
3618   PetscCall(PetscLogEventBegin(MAT_Solve, mat, b, x, 0));
3619   if (mat->factorerrortype) {
3620     PetscCall(PetscInfo(mat, "MatFactorError %d\n", mat->factorerrortype));
3621     PetscCall(VecSetInf(x));
3622   } else PetscUseTypeMethod(mat, solve, b, x);
3623   PetscCall(PetscLogEventEnd(MAT_Solve, mat, b, x, 0));
3624   PetscCall(PetscObjectStateIncrease((PetscObject)x));
3625   PetscFunctionReturn(PETSC_SUCCESS);
3626 }
3627 
3628 static PetscErrorCode MatMatSolve_Basic(Mat A, Mat B, Mat X, PetscBool trans)
3629 {
3630   Vec      b, x;
3631   PetscInt N, i;
3632   PetscErrorCode (*f)(Mat, Vec, Vec);
3633   PetscBool Abound, Bneedconv = PETSC_FALSE, Xneedconv = PETSC_FALSE;
3634 
3635   PetscFunctionBegin;
3636   if (A->factorerrortype) {
3637     PetscCall(PetscInfo(A, "MatFactorError %d\n", A->factorerrortype));
3638     PetscCall(MatSetInf(X));
3639     PetscFunctionReturn(PETSC_SUCCESS);
3640   }
3641   f = (!trans || (!A->ops->solvetranspose && A->symmetric)) ? A->ops->solve : A->ops->solvetranspose;
3642   PetscCheck(f, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Mat type %s", ((PetscObject)A)->type_name);
3643   PetscCall(MatBoundToCPU(A, &Abound));
3644   if (!Abound) {
3645     PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &Bneedconv, MATSEQDENSE, MATMPIDENSE, ""));
3646     PetscCall(PetscObjectTypeCompareAny((PetscObject)X, &Xneedconv, MATSEQDENSE, MATMPIDENSE, ""));
3647   }
3648 #if PetscDefined(HAVE_CUDA)
3649   if (Bneedconv) PetscCall(MatConvert(B, MATDENSECUDA, MAT_INPLACE_MATRIX, &B));
3650   if (Xneedconv) PetscCall(MatConvert(X, MATDENSECUDA, MAT_INPLACE_MATRIX, &X));
3651 #elif PetscDefined(HAVE_HIP)
3652   if (Bneedconv) PetscCall(MatConvert(B, MATDENSEHIP, MAT_INPLACE_MATRIX, &B));
3653   if (Xneedconv) PetscCall(MatConvert(X, MATDENSEHIP, MAT_INPLACE_MATRIX, &X));
3654 #endif
3655   PetscCall(MatGetSize(B, NULL, &N));
3656   for (i = 0; i < N; i++) {
3657     PetscCall(MatDenseGetColumnVecRead(B, i, &b));
3658     PetscCall(MatDenseGetColumnVecWrite(X, i, &x));
3659     PetscCall((*f)(A, b, x));
3660     PetscCall(MatDenseRestoreColumnVecWrite(X, i, &x));
3661     PetscCall(MatDenseRestoreColumnVecRead(B, i, &b));
3662   }
3663   if (Bneedconv) PetscCall(MatConvert(B, MATDENSE, MAT_INPLACE_MATRIX, &B));
3664   if (Xneedconv) PetscCall(MatConvert(X, MATDENSE, MAT_INPLACE_MATRIX, &X));
3665   PetscFunctionReturn(PETSC_SUCCESS);
3666 }
3667 
3668 /*@
3669   MatMatSolve - Solves $A X = B$, given a factored matrix.
3670 
3671   Neighbor-wise Collective
3672 
3673   Input Parameters:
3674 + A - the factored matrix
3675 - B - the right-hand-side matrix `MATDENSE` (or sparse `MATAIJ`-- when using MUMPS)
3676 
3677   Output Parameter:
3678 . X - the result matrix (dense matrix)
3679 
3680   Level: developer
3681 
3682   Note:
3683   If `B` is a `MATDENSE` matrix then one can call `MatMatSolve`(A,B,B) except with `MATSOLVERMKL_CPARDISO`;
3684   otherwise, `B` and `X` cannot be the same.
3685 
3686 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatSolve()`, `MatMatSolveTranspose()`, `MatLUFactor()`, `MatCholeskyFactor()`
3687 @*/
3688 PetscErrorCode MatMatSolve(Mat A, Mat B, Mat X)
3689 {
3690   PetscFunctionBegin;
3691   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
3692   PetscValidType(A, 1);
3693   PetscValidHeaderSpecific(B, MAT_CLASSID, 2);
3694   PetscValidHeaderSpecific(X, MAT_CLASSID, 3);
3695   PetscCheckSameComm(A, 1, B, 2);
3696   PetscCheckSameComm(A, 1, X, 3);
3697   PetscCheck(A->cmap->N == X->rmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_SIZ, "Mat A,Mat X: global dim %" PetscInt_FMT " %" PetscInt_FMT, A->cmap->N, X->rmap->N);
3698   PetscCheck(A->rmap->N == B->rmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_SIZ, "Mat A,Mat B: global dim %" PetscInt_FMT " %" PetscInt_FMT, A->rmap->N, B->rmap->N);
3699   PetscCheck(X->cmap->N == B->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_SIZ, "Solution matrix must have same number of columns as rhs matrix");
3700   if (!A->rmap->N && !A->cmap->N) PetscFunctionReturn(PETSC_SUCCESS);
3701   MatCheckPreallocated(A, 1);
3702 
3703   PetscCall(PetscLogEventBegin(MAT_MatSolve, A, B, X, 0));
3704   if (!A->ops->matsolve) {
3705     PetscCall(PetscInfo(A, "Mat type %s using basic MatMatSolve\n", ((PetscObject)A)->type_name));
3706     PetscCall(MatMatSolve_Basic(A, B, X, PETSC_FALSE));
3707   } else PetscUseTypeMethod(A, matsolve, B, X);
3708   PetscCall(PetscLogEventEnd(MAT_MatSolve, A, B, X, 0));
3709   PetscCall(PetscObjectStateIncrease((PetscObject)X));
3710   PetscFunctionReturn(PETSC_SUCCESS);
3711 }
3712 
3713 /*@
3714   MatMatSolveTranspose - Solves $A^T X = B $, given a factored matrix.
3715 
3716   Neighbor-wise Collective
3717 
3718   Input Parameters:
3719 + A - the factored matrix
3720 - B - the right-hand-side matrix  (`MATDENSE` matrix)
3721 
3722   Output Parameter:
3723 . X - the result matrix (dense matrix)
3724 
3725   Level: developer
3726 
3727   Note:
3728   The matrices `B` and `X` cannot be the same.  I.e., one cannot
3729   call `MatMatSolveTranspose`(A,X,X).
3730 
3731 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatSolveTranspose()`, `MatMatSolve()`, `MatLUFactor()`, `MatCholeskyFactor()`
3732 @*/
3733 PetscErrorCode MatMatSolveTranspose(Mat A, Mat B, Mat X)
3734 {
3735   PetscFunctionBegin;
3736   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
3737   PetscValidType(A, 1);
3738   PetscValidHeaderSpecific(B, MAT_CLASSID, 2);
3739   PetscValidHeaderSpecific(X, MAT_CLASSID, 3);
3740   PetscCheckSameComm(A, 1, B, 2);
3741   PetscCheckSameComm(A, 1, X, 3);
3742   PetscCheck(X != B, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_IDN, "X and B must be different matrices");
3743   PetscCheck(A->cmap->N == X->rmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_SIZ, "Mat A,Mat X: global dim %" PetscInt_FMT " %" PetscInt_FMT, A->cmap->N, X->rmap->N);
3744   PetscCheck(A->rmap->N == B->rmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_SIZ, "Mat A,Mat B: global dim %" PetscInt_FMT " %" PetscInt_FMT, A->rmap->N, B->rmap->N);
3745   PetscCheck(A->rmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Mat A,Mat B: local dim %" PetscInt_FMT " %" PetscInt_FMT, A->rmap->n, B->rmap->n);
3746   PetscCheck(X->cmap->N >= B->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Solution matrix must have same number of columns as rhs matrix");
3747   if (!A->rmap->N && !A->cmap->N) PetscFunctionReturn(PETSC_SUCCESS);
3748   MatCheckPreallocated(A, 1);
3749 
3750   PetscCall(PetscLogEventBegin(MAT_MatSolve, A, B, X, 0));
3751   if (!A->ops->matsolvetranspose) {
3752     PetscCall(PetscInfo(A, "Mat type %s using basic MatMatSolveTranspose\n", ((PetscObject)A)->type_name));
3753     PetscCall(MatMatSolve_Basic(A, B, X, PETSC_TRUE));
3754   } else PetscUseTypeMethod(A, matsolvetranspose, B, X);
3755   PetscCall(PetscLogEventEnd(MAT_MatSolve, A, B, X, 0));
3756   PetscCall(PetscObjectStateIncrease((PetscObject)X));
3757   PetscFunctionReturn(PETSC_SUCCESS);
3758 }
3759 
3760 /*@
3761   MatMatTransposeSolve - Solves $A X = B^T$, given a factored matrix.
3762 
3763   Neighbor-wise Collective
3764 
3765   Input Parameters:
3766 + A  - the factored matrix
3767 - Bt - the transpose of right-hand-side matrix as a `MATDENSE`
3768 
3769   Output Parameter:
3770 . X - the result matrix (dense matrix)
3771 
3772   Level: developer
3773 
3774   Note:
3775   For MUMPS, it only supports centralized sparse compressed column format on the host processor for right hand side matrix. User must create `Bt` in sparse compressed row
3776   format on the host processor and call `MatMatTransposeSolve()` to implement MUMPS' `MatMatSolve()`.
3777 
3778 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatMatSolve()`, `MatMatSolveTranspose()`, `MatLUFactor()`, `MatCholeskyFactor()`
3779 @*/
3780 PetscErrorCode MatMatTransposeSolve(Mat A, Mat Bt, Mat X)
3781 {
3782   PetscFunctionBegin;
3783   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
3784   PetscValidType(A, 1);
3785   PetscValidHeaderSpecific(Bt, MAT_CLASSID, 2);
3786   PetscValidHeaderSpecific(X, MAT_CLASSID, 3);
3787   PetscCheckSameComm(A, 1, Bt, 2);
3788   PetscCheckSameComm(A, 1, X, 3);
3789 
3790   PetscCheck(X != Bt, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_IDN, "X and B must be different matrices");
3791   PetscCheck(A->cmap->N == X->rmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_SIZ, "Mat A,Mat X: global dim %" PetscInt_FMT " %" PetscInt_FMT, A->cmap->N, X->rmap->N);
3792   PetscCheck(A->rmap->N == Bt->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_SIZ, "Mat A,Mat Bt: global dim %" PetscInt_FMT " %" PetscInt_FMT, A->rmap->N, Bt->cmap->N);
3793   PetscCheck(X->cmap->N >= Bt->rmap->N, PetscObjectComm((PetscObject)X), PETSC_ERR_ARG_SIZ, "Solution matrix must have same number of columns as row number of the rhs matrix");
3794   if (!A->rmap->N && !A->cmap->N) PetscFunctionReturn(PETSC_SUCCESS);
3795   PetscCheck(A->factortype, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONGSTATE, "Unfactored matrix");
3796   MatCheckPreallocated(A, 1);
3797 
3798   PetscCall(PetscLogEventBegin(MAT_MatTrSolve, A, Bt, X, 0));
3799   PetscUseTypeMethod(A, mattransposesolve, Bt, X);
3800   PetscCall(PetscLogEventEnd(MAT_MatTrSolve, A, Bt, X, 0));
3801   PetscCall(PetscObjectStateIncrease((PetscObject)X));
3802   PetscFunctionReturn(PETSC_SUCCESS);
3803 }
3804 
3805 /*@
3806   MatForwardSolve - Solves $ L x = b $, given a factored matrix, $A = LU $, or
3807   $U^T*D^(1/2) x = b$, given a factored symmetric matrix, $A = U^T*D*U$,
3808 
3809   Neighbor-wise Collective
3810 
3811   Input Parameters:
3812 + mat - the factored matrix
3813 - b   - the right-hand-side vector
3814 
3815   Output Parameter:
3816 . x - the result vector
3817 
3818   Level: developer
3819 
3820   Notes:
3821   `MatSolve()` should be used for most applications, as it performs
3822   a forward solve followed by a backward solve.
3823 
3824   The vectors `b` and `x` cannot be the same,  i.e., one cannot
3825   call `MatForwardSolve`(A,x,x).
3826 
3827   For matrix in `MATSEQBAIJ` format with block size larger than 1,
3828   the diagonal blocks are not implemented as $D = D^(1/2) * D^(1/2)$ yet.
3829   `MatForwardSolve()` solves $U^T*D y = b$, and
3830   `MatBackwardSolve()` solves $U x = y$.
3831   Thus they do not provide a symmetric preconditioner.
3832 
3833 .seealso: [](ch_matrices), `Mat`, `MatBackwardSolve()`, `MatGetFactor()`, `MatSolve()`
3834 @*/
3835 PetscErrorCode MatForwardSolve(Mat mat, Vec b, Vec x)
3836 {
3837   PetscFunctionBegin;
3838   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
3839   PetscValidType(mat, 1);
3840   PetscValidHeaderSpecific(b, VEC_CLASSID, 2);
3841   PetscValidHeaderSpecific(x, VEC_CLASSID, 3);
3842   PetscCheckSameComm(mat, 1, b, 2);
3843   PetscCheckSameComm(mat, 1, x, 3);
3844   PetscCheck(x != b, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_IDN, "x and b must be different vectors");
3845   PetscCheck(mat->cmap->N == x->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec x: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->cmap->N, x->map->N);
3846   PetscCheck(mat->rmap->N == b->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec b: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->N, b->map->N);
3847   PetscCheck(mat->rmap->n == b->map->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Mat mat,Vec b: local dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->n, b->map->n);
3848   if (!mat->rmap->N && !mat->cmap->N) PetscFunctionReturn(PETSC_SUCCESS);
3849   MatCheckPreallocated(mat, 1);
3850 
3851   PetscCall(PetscLogEventBegin(MAT_ForwardSolve, mat, b, x, 0));
3852   PetscUseTypeMethod(mat, forwardsolve, b, x);
3853   PetscCall(PetscLogEventEnd(MAT_ForwardSolve, mat, b, x, 0));
3854   PetscCall(PetscObjectStateIncrease((PetscObject)x));
3855   PetscFunctionReturn(PETSC_SUCCESS);
3856 }
3857 
3858 /*@
3859   MatBackwardSolve - Solves $U x = b$, given a factored matrix, $A = LU$.
3860   $D^(1/2) U x = b$, given a factored symmetric matrix, $A = U^T*D*U$,
3861 
3862   Neighbor-wise Collective
3863 
3864   Input Parameters:
3865 + mat - the factored matrix
3866 - b   - the right-hand-side vector
3867 
3868   Output Parameter:
3869 . x - the result vector
3870 
3871   Level: developer
3872 
3873   Notes:
3874   `MatSolve()` should be used for most applications, as it performs
3875   a forward solve followed by a backward solve.
3876 
3877   The vectors `b` and `x` cannot be the same.  I.e., one cannot
3878   call `MatBackwardSolve`(A,x,x).
3879 
3880   For matrix in `MATSEQBAIJ` format with block size larger than 1,
3881   the diagonal blocks are not implemented as $D = D^(1/2) * D^(1/2)$ yet.
3882   `MatForwardSolve()` solves $U^T*D y = b$, and
3883   `MatBackwardSolve()` solves $U x = y$.
3884   Thus they do not provide a symmetric preconditioner.
3885 
3886 .seealso: [](ch_matrices), `Mat`, `MatForwardSolve()`, `MatGetFactor()`, `MatSolve()`
3887 @*/
3888 PetscErrorCode MatBackwardSolve(Mat mat, Vec b, Vec x)
3889 {
3890   PetscFunctionBegin;
3891   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
3892   PetscValidType(mat, 1);
3893   PetscValidHeaderSpecific(b, VEC_CLASSID, 2);
3894   PetscValidHeaderSpecific(x, VEC_CLASSID, 3);
3895   PetscCheckSameComm(mat, 1, b, 2);
3896   PetscCheckSameComm(mat, 1, x, 3);
3897   PetscCheck(x != b, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_IDN, "x and b must be different vectors");
3898   PetscCheck(mat->cmap->N == x->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec x: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->cmap->N, x->map->N);
3899   PetscCheck(mat->rmap->N == b->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec b: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->N, b->map->N);
3900   PetscCheck(mat->rmap->n == b->map->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Mat mat,Vec b: local dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->n, b->map->n);
3901   if (!mat->rmap->N && !mat->cmap->N) PetscFunctionReturn(PETSC_SUCCESS);
3902   MatCheckPreallocated(mat, 1);
3903 
3904   PetscCall(PetscLogEventBegin(MAT_BackwardSolve, mat, b, x, 0));
3905   PetscUseTypeMethod(mat, backwardsolve, b, x);
3906   PetscCall(PetscLogEventEnd(MAT_BackwardSolve, mat, b, x, 0));
3907   PetscCall(PetscObjectStateIncrease((PetscObject)x));
3908   PetscFunctionReturn(PETSC_SUCCESS);
3909 }
3910 
3911 /*@
3912   MatSolveAdd - Computes $x = y + A^{-1}*b$, given a factored matrix.
3913 
3914   Neighbor-wise Collective
3915 
3916   Input Parameters:
3917 + mat - the factored matrix
3918 . b   - the right-hand-side vector
3919 - y   - the vector to be added to
3920 
3921   Output Parameter:
3922 . x - the result vector
3923 
3924   Level: developer
3925 
3926   Note:
3927   The vectors `b` and `x` cannot be the same.  I.e., one cannot
3928   call `MatSolveAdd`(A,x,y,x).
3929 
3930 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatSolve()`, `MatGetFactor()`, `MatSolveTranspose()`, `MatSolveTransposeAdd()`
3931 @*/
3932 PetscErrorCode MatSolveAdd(Mat mat, Vec b, Vec y, Vec x)
3933 {
3934   PetscScalar one = 1.0;
3935   Vec         tmp;
3936 
3937   PetscFunctionBegin;
3938   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
3939   PetscValidType(mat, 1);
3940   PetscValidHeaderSpecific(y, VEC_CLASSID, 3);
3941   PetscValidHeaderSpecific(b, VEC_CLASSID, 2);
3942   PetscValidHeaderSpecific(x, VEC_CLASSID, 4);
3943   PetscCheckSameComm(mat, 1, b, 2);
3944   PetscCheckSameComm(mat, 1, y, 3);
3945   PetscCheckSameComm(mat, 1, x, 4);
3946   PetscCheck(x != b, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_IDN, "x and b must be different vectors");
3947   PetscCheck(mat->cmap->N == x->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec x: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->cmap->N, x->map->N);
3948   PetscCheck(mat->rmap->N == b->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec b: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->N, b->map->N);
3949   PetscCheck(mat->rmap->N == y->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec y: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->N, y->map->N);
3950   PetscCheck(mat->rmap->n == b->map->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Mat mat,Vec b: local dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->n, b->map->n);
3951   PetscCheck(x->map->n == y->map->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Vec x,Vec y: local dim %" PetscInt_FMT " %" PetscInt_FMT, x->map->n, y->map->n);
3952   if (!mat->rmap->N && !mat->cmap->N) PetscFunctionReturn(PETSC_SUCCESS);
3953   MatCheckPreallocated(mat, 1);
3954 
3955   PetscCall(PetscLogEventBegin(MAT_SolveAdd, mat, b, x, y));
3956   if (mat->factorerrortype) {
3957     PetscCall(PetscInfo(mat, "MatFactorError %d\n", mat->factorerrortype));
3958     PetscCall(VecSetInf(x));
3959   } else if (mat->ops->solveadd) {
3960     PetscUseTypeMethod(mat, solveadd, b, y, x);
3961   } else {
3962     /* do the solve then the add manually */
3963     if (x != y) {
3964       PetscCall(MatSolve(mat, b, x));
3965       PetscCall(VecAXPY(x, one, y));
3966     } else {
3967       PetscCall(VecDuplicate(x, &tmp));
3968       PetscCall(VecCopy(x, tmp));
3969       PetscCall(MatSolve(mat, b, x));
3970       PetscCall(VecAXPY(x, one, tmp));
3971       PetscCall(VecDestroy(&tmp));
3972     }
3973   }
3974   PetscCall(PetscLogEventEnd(MAT_SolveAdd, mat, b, x, y));
3975   PetscCall(PetscObjectStateIncrease((PetscObject)x));
3976   PetscFunctionReturn(PETSC_SUCCESS);
3977 }
3978 
3979 /*@
3980   MatSolveTranspose - Solves $A^T x = b$, given a factored matrix.
3981 
3982   Neighbor-wise Collective
3983 
3984   Input Parameters:
3985 + mat - the factored matrix
3986 - b   - the right-hand-side vector
3987 
3988   Output Parameter:
3989 . x - the result vector
3990 
3991   Level: developer
3992 
3993   Notes:
3994   The vectors `b` and `x` cannot be the same.  I.e., one cannot
3995   call `MatSolveTranspose`(A,x,x).
3996 
3997   Most users should employ the `KSP` interface for linear solvers
3998   instead of working directly with matrix algebra routines such as this.
3999   See, e.g., `KSPCreate()`.
4000 
4001 .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `KSP`, `MatSolve()`, `MatSolveAdd()`, `MatSolveTransposeAdd()`
4002 @*/
4003 PetscErrorCode MatSolveTranspose(Mat mat, Vec b, Vec x)
4004 {
4005   PetscErrorCode (*f)(Mat, Vec, Vec) = (!mat->ops->solvetranspose && mat->symmetric) ? mat->ops->solve : mat->ops->solvetranspose;
4006 
4007   PetscFunctionBegin;
4008   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
4009   PetscValidType(mat, 1);
4010   PetscValidHeaderSpecific(b, VEC_CLASSID, 2);
4011   PetscValidHeaderSpecific(x, VEC_CLASSID, 3);
4012   PetscCheckSameComm(mat, 1, b, 2);
4013   PetscCheckSameComm(mat, 1, x, 3);
4014   PetscCheck(x != b, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_IDN, "x and b must be different vectors");
4015   PetscCheck(mat->rmap->N == x->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec x: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->N, x->map->N);
4016   PetscCheck(mat->cmap->N == b->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec b: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->cmap->N, b->map->N);
4017   if (!mat->rmap->N && !mat->cmap->N) PetscFunctionReturn(PETSC_SUCCESS);
4018   MatCheckPreallocated(mat, 1);
4019   PetscCall(PetscLogEventBegin(MAT_SolveTranspose, mat, b, x, 0));
4020   if (mat->factorerrortype) {
4021     PetscCall(PetscInfo(mat, "MatFactorError %d\n", mat->factorerrortype));
4022     PetscCall(VecSetInf(x));
4023   } else {
4024     PetscCheck(f, PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "Matrix type %s", ((PetscObject)mat)->type_name);
4025     PetscCall((*f)(mat, b, x));
4026   }
4027   PetscCall(PetscLogEventEnd(MAT_SolveTranspose, mat, b, x, 0));
4028   PetscCall(PetscObjectStateIncrease((PetscObject)x));
4029   PetscFunctionReturn(PETSC_SUCCESS);
4030 }
4031 
4032 /*@
4033   MatSolveTransposeAdd - Computes $x = y + A^{-T} b$
4034   factored matrix.
4035 
4036   Neighbor-wise Collective
4037 
4038   Input Parameters:
4039 + mat - the factored matrix
4040 . b   - the right-hand-side vector
4041 - y   - the vector to be added to
4042 
4043   Output Parameter:
4044 . x - the result vector
4045 
4046   Level: developer
4047 
4048   Note:
4049   The vectors `b` and `x` cannot be the same.  I.e., one cannot
4050   call `MatSolveTransposeAdd`(A,x,y,x).
4051 
4052 .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatSolve()`, `MatSolveAdd()`, `MatSolveTranspose()`
4053 @*/
4054 PetscErrorCode MatSolveTransposeAdd(Mat mat, Vec b, Vec y, Vec x)
4055 {
4056   PetscScalar one = 1.0;
4057   Vec         tmp;
4058   PetscErrorCode (*f)(Mat, Vec, Vec, Vec) = (!mat->ops->solvetransposeadd && mat->symmetric) ? mat->ops->solveadd : mat->ops->solvetransposeadd;
4059 
4060   PetscFunctionBegin;
4061   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
4062   PetscValidType(mat, 1);
4063   PetscValidHeaderSpecific(y, VEC_CLASSID, 3);
4064   PetscValidHeaderSpecific(b, VEC_CLASSID, 2);
4065   PetscValidHeaderSpecific(x, VEC_CLASSID, 4);
4066   PetscCheckSameComm(mat, 1, b, 2);
4067   PetscCheckSameComm(mat, 1, y, 3);
4068   PetscCheckSameComm(mat, 1, x, 4);
4069   PetscCheck(x != b, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_IDN, "x and b must be different vectors");
4070   PetscCheck(mat->rmap->N == x->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec x: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->N, x->map->N);
4071   PetscCheck(mat->cmap->N == b->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec b: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->cmap->N, b->map->N);
4072   PetscCheck(mat->cmap->N == y->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec y: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->cmap->N, y->map->N);
4073   PetscCheck(x->map->n == y->map->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Vec x,Vec y: local dim %" PetscInt_FMT " %" PetscInt_FMT, x->map->n, y->map->n);
4074   if (!mat->rmap->N && !mat->cmap->N) PetscFunctionReturn(PETSC_SUCCESS);
4075   MatCheckPreallocated(mat, 1);
4076 
4077   PetscCall(PetscLogEventBegin(MAT_SolveTransposeAdd, mat, b, x, y));
4078   if (mat->factorerrortype) {
4079     PetscCall(PetscInfo(mat, "MatFactorError %d\n", mat->factorerrortype));
4080     PetscCall(VecSetInf(x));
4081   } else if (f) {
4082     PetscCall((*f)(mat, b, y, x));
4083   } else {
4084     /* do the solve then the add manually */
4085     if (x != y) {
4086       PetscCall(MatSolveTranspose(mat, b, x));
4087       PetscCall(VecAXPY(x, one, y));
4088     } else {
4089       PetscCall(VecDuplicate(x, &tmp));
4090       PetscCall(VecCopy(x, tmp));
4091       PetscCall(MatSolveTranspose(mat, b, x));
4092       PetscCall(VecAXPY(x, one, tmp));
4093       PetscCall(VecDestroy(&tmp));
4094     }
4095   }
4096   PetscCall(PetscLogEventEnd(MAT_SolveTransposeAdd, mat, b, x, y));
4097   PetscCall(PetscObjectStateIncrease((PetscObject)x));
4098   PetscFunctionReturn(PETSC_SUCCESS);
4099 }
4100 
4101 // PetscClangLinter pragma disable: -fdoc-section-header-unknown
4102 /*@
4103   MatSOR - Computes relaxation (SOR, Gauss-Seidel) sweeps.
4104 
4105   Neighbor-wise Collective
4106 
4107   Input Parameters:
4108 + mat   - the matrix
4109 . b     - the right hand side
4110 . omega - the relaxation factor
4111 . flag  - flag indicating the type of SOR (see below)
4112 . shift - diagonal shift
4113 . its   - the number of iterations
4114 - lits  - the number of local iterations
4115 
4116   Output Parameter:
4117 . x - the solution (can contain an initial guess, use option `SOR_ZERO_INITIAL_GUESS` to indicate no guess)
4118 
4119   SOR Flags:
4120 +     `SOR_FORWARD_SWEEP` - forward SOR
4121 .     `SOR_BACKWARD_SWEEP` - backward SOR
4122 .     `SOR_SYMMETRIC_SWEEP` - SSOR (symmetric SOR)
4123 .     `SOR_LOCAL_FORWARD_SWEEP` - local forward SOR
4124 .     `SOR_LOCAL_BACKWARD_SWEEP` - local forward SOR
4125 .     `SOR_LOCAL_SYMMETRIC_SWEEP` - local SSOR
4126 .     `SOR_EISENSTAT` - SOR with Eisenstat trick
4127 .     `SOR_APPLY_UPPER`, `SOR_APPLY_LOWER` - applies
4128   upper/lower triangular part of matrix to
4129   vector (with omega)
4130 -     `SOR_ZERO_INITIAL_GUESS` - zero initial guess
4131 
4132   Level: developer
4133 
4134   Notes:
4135   `SOR_LOCAL_FORWARD_SWEEP`, `SOR_LOCAL_BACKWARD_SWEEP`, and
4136   `SOR_LOCAL_SYMMETRIC_SWEEP` perform separate independent smoothings
4137   on each processor.
4138 
4139   Application programmers will not generally use `MatSOR()` directly,
4140   but instead will employ the `KSP`/`PC` interface.
4141 
4142   For `MATBAIJ`, `MATSBAIJ`, and `MATAIJ` matrices with Inodes this does a block SOR smoothing, otherwise it does a pointwise smoothing
4143 
4144   Most users should employ the `KSP` interface for linear solvers
4145   instead of working directly with matrix algebra routines such as this.
4146   See, e.g., `KSPCreate()`.
4147 
4148   Vectors `x` and `b` CANNOT be the same
4149 
4150   The flags are implemented as bitwise inclusive or operations.
4151   For example, use (`SOR_ZERO_INITIAL_GUESS` | `SOR_SYMMETRIC_SWEEP`)
4152   to specify a zero initial guess for SSOR.
4153 
4154   Developer Note:
4155   We should add block SOR support for `MATAIJ` matrices with block size set to great than one and no inodes
4156 
4157 .seealso: [](ch_matrices), `Mat`, `MatMult()`, `KSP`, `PC`, `MatGetFactor()`
4158 @*/
4159 PetscErrorCode MatSOR(Mat mat, Vec b, PetscReal omega, MatSORType flag, PetscReal shift, PetscInt its, PetscInt lits, Vec x)
4160 {
4161   PetscFunctionBegin;
4162   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
4163   PetscValidType(mat, 1);
4164   PetscValidHeaderSpecific(b, VEC_CLASSID, 2);
4165   PetscValidHeaderSpecific(x, VEC_CLASSID, 8);
4166   PetscCheckSameComm(mat, 1, b, 2);
4167   PetscCheckSameComm(mat, 1, x, 8);
4168   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
4169   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
4170   PetscCheck(mat->cmap->N == x->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec x: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->cmap->N, x->map->N);
4171   PetscCheck(mat->rmap->N == b->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec b: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->N, b->map->N);
4172   PetscCheck(mat->rmap->n == b->map->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Mat mat,Vec b: local dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->n, b->map->n);
4173   PetscCheck(its > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Relaxation requires global its %" PetscInt_FMT " positive", its);
4174   PetscCheck(lits > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Relaxation requires local its %" PetscInt_FMT " positive", lits);
4175   PetscCheck(b != x, PETSC_COMM_SELF, PETSC_ERR_ARG_IDN, "b and x vector cannot be the same");
4176 
4177   MatCheckPreallocated(mat, 1);
4178   PetscCall(PetscLogEventBegin(MAT_SOR, mat, b, x, 0));
4179   PetscUseTypeMethod(mat, sor, b, omega, flag, shift, its, lits, x);
4180   PetscCall(PetscLogEventEnd(MAT_SOR, mat, b, x, 0));
4181   PetscCall(PetscObjectStateIncrease((PetscObject)x));
4182   PetscFunctionReturn(PETSC_SUCCESS);
4183 }
4184 
4185 /*
4186       Default matrix copy routine.
4187 */
4188 PetscErrorCode MatCopy_Basic(Mat A, Mat B, MatStructure str)
4189 {
4190   PetscInt           i, rstart = 0, rend = 0, nz;
4191   const PetscInt    *cwork;
4192   const PetscScalar *vwork;
4193 
4194   PetscFunctionBegin;
4195   if (B->assembled) PetscCall(MatZeroEntries(B));
4196   if (str == SAME_NONZERO_PATTERN) {
4197     PetscCall(MatGetOwnershipRange(A, &rstart, &rend));
4198     for (i = rstart; i < rend; i++) {
4199       PetscCall(MatGetRow(A, i, &nz, &cwork, &vwork));
4200       PetscCall(MatSetValues(B, 1, &i, nz, cwork, vwork, INSERT_VALUES));
4201       PetscCall(MatRestoreRow(A, i, &nz, &cwork, &vwork));
4202     }
4203   } else {
4204     PetscCall(MatAYPX(B, 0.0, A, str));
4205   }
4206   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
4207   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
4208   PetscFunctionReturn(PETSC_SUCCESS);
4209 }
4210 
4211 /*@
4212   MatCopy - Copies a matrix to another matrix.
4213 
4214   Collective
4215 
4216   Input Parameters:
4217 + A   - the matrix
4218 - str - `SAME_NONZERO_PATTERN` or `DIFFERENT_NONZERO_PATTERN`
4219 
4220   Output Parameter:
4221 . B - where the copy is put
4222 
4223   Level: intermediate
4224 
4225   Notes:
4226   If you use `SAME_NONZERO_PATTERN` then the two matrices must have the same nonzero pattern or the routine will crash.
4227 
4228   `MatCopy()` copies the matrix entries of a matrix to another existing
4229   matrix (after first zeroing the second matrix).  A related routine is
4230   `MatConvert()`, which first creates a new matrix and then copies the data.
4231 
4232 .seealso: [](ch_matrices), `Mat`, `MatConvert()`, `MatDuplicate()`
4233 @*/
4234 PetscErrorCode MatCopy(Mat A, Mat B, MatStructure str)
4235 {
4236   PetscInt i;
4237 
4238   PetscFunctionBegin;
4239   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
4240   PetscValidHeaderSpecific(B, MAT_CLASSID, 2);
4241   PetscValidType(A, 1);
4242   PetscValidType(B, 2);
4243   PetscCheckSameComm(A, 1, B, 2);
4244   MatCheckPreallocated(B, 2);
4245   PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
4246   PetscCheck(!A->factortype, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
4247   PetscCheck(A->rmap->N == B->rmap->N && A->cmap->N == B->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_SIZ, "Mat A,Mat B: global dim (%" PetscInt_FMT ",%" PetscInt_FMT ") (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->N, B->rmap->N,
4248              A->cmap->N, B->cmap->N);
4249   MatCheckPreallocated(A, 1);
4250   if (A == B) PetscFunctionReturn(PETSC_SUCCESS);
4251 
4252   PetscCall(PetscLogEventBegin(MAT_Copy, A, B, 0, 0));
4253   if (A->ops->copy) PetscUseTypeMethod(A, copy, B, str);
4254   else PetscCall(MatCopy_Basic(A, B, str));
4255 
4256   B->stencil.dim = A->stencil.dim;
4257   B->stencil.noc = A->stencil.noc;
4258   for (i = 0; i <= A->stencil.dim + (A->stencil.noc ? 0 : -1); i++) {
4259     B->stencil.dims[i]   = A->stencil.dims[i];
4260     B->stencil.starts[i] = A->stencil.starts[i];
4261   }
4262 
4263   PetscCall(PetscLogEventEnd(MAT_Copy, A, B, 0, 0));
4264   PetscCall(PetscObjectStateIncrease((PetscObject)B));
4265   PetscFunctionReturn(PETSC_SUCCESS);
4266 }
4267 
4268 /*@C
4269   MatConvert - Converts a matrix to another matrix, either of the same
4270   or different type.
4271 
4272   Collective
4273 
4274   Input Parameters:
4275 + mat     - the matrix
4276 . newtype - new matrix type.  Use `MATSAME` to create a new matrix of the
4277    same type as the original matrix.
4278 - reuse   - denotes if the destination matrix is to be created or reused.
4279    Use `MAT_INPLACE_MATRIX` for inplace conversion (that is when you want the input mat to be changed to contain the matrix in the new format), otherwise use
4280    `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` (can only be used after the first call was made with `MAT_INITIAL_MATRIX`, causes the matrix space in M to be reused).
4281 
4282   Output Parameter:
4283 . M - pointer to place new matrix
4284 
4285   Level: intermediate
4286 
4287   Notes:
4288   `MatConvert()` first creates a new matrix and then copies the data from
4289   the first matrix.  A related routine is `MatCopy()`, which copies the matrix
4290   entries of one matrix to another already existing matrix context.
4291 
4292   Cannot be used to convert a sequential matrix to parallel or parallel to sequential,
4293   the MPI communicator of the generated matrix is always the same as the communicator
4294   of the input matrix.
4295 
4296 .seealso: [](ch_matrices), `Mat`, `MatCopy()`, `MatDuplicate()`, `MAT_INITIAL_MATRIX`, `MAT_REUSE_MATRIX`, `MAT_INPLACE_MATRIX`
4297 @*/
4298 PetscErrorCode MatConvert(Mat mat, MatType newtype, MatReuse reuse, Mat *M)
4299 {
4300   PetscBool  sametype, issame, flg;
4301   PetscBool3 issymmetric, ishermitian;
4302   char       convname[256], mtype[256];
4303   Mat        B;
4304 
4305   PetscFunctionBegin;
4306   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
4307   PetscValidType(mat, 1);
4308   PetscAssertPointer(M, 4);
4309   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
4310   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
4311   MatCheckPreallocated(mat, 1);
4312 
4313   PetscCall(PetscOptionsGetString(((PetscObject)mat)->options, ((PetscObject)mat)->prefix, "-matconvert_type", mtype, sizeof(mtype), &flg));
4314   if (flg) newtype = mtype;
4315 
4316   PetscCall(PetscObjectTypeCompare((PetscObject)mat, newtype, &sametype));
4317   PetscCall(PetscStrcmp(newtype, "same", &issame));
4318   PetscCheck(!(reuse == MAT_INPLACE_MATRIX) || !(mat != *M), PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "MAT_INPLACE_MATRIX requires same input and output matrix");
4319   if (reuse == MAT_REUSE_MATRIX) {
4320     PetscValidHeaderSpecific(*M, MAT_CLASSID, 4);
4321     PetscCheck(mat != *M, PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "MAT_REUSE_MATRIX means reuse matrix in final argument, perhaps you mean MAT_INPLACE_MATRIX");
4322   }
4323 
4324   if ((reuse == MAT_INPLACE_MATRIX) && (issame || sametype)) {
4325     PetscCall(PetscInfo(mat, "Early return for inplace %s %d %d\n", ((PetscObject)mat)->type_name, sametype, issame));
4326     PetscFunctionReturn(PETSC_SUCCESS);
4327   }
4328 
4329   /* Cache Mat options because some converters use MatHeaderReplace  */
4330   issymmetric = mat->symmetric;
4331   ishermitian = mat->hermitian;
4332 
4333   if ((sametype || issame) && (reuse == MAT_INITIAL_MATRIX) && mat->ops->duplicate) {
4334     PetscCall(PetscInfo(mat, "Calling duplicate for initial matrix %s %d %d\n", ((PetscObject)mat)->type_name, sametype, issame));
4335     PetscUseTypeMethod(mat, duplicate, MAT_COPY_VALUES, M);
4336   } else {
4337     PetscErrorCode (*conv)(Mat, MatType, MatReuse, Mat *) = NULL;
4338     const char *prefix[3]                                 = {"seq", "mpi", ""};
4339     PetscInt    i;
4340     /*
4341        Order of precedence:
4342        0) See if newtype is a superclass of the current matrix.
4343        1) See if a specialized converter is known to the current matrix.
4344        2) See if a specialized converter is known to the desired matrix class.
4345        3) See if a good general converter is registered for the desired class
4346           (as of 6/27/03 only MATMPIADJ falls into this category).
4347        4) See if a good general converter is known for the current matrix.
4348        5) Use a really basic converter.
4349     */
4350 
4351     /* 0) See if newtype is a superclass of the current matrix.
4352           i.e mat is mpiaij and newtype is aij */
4353     for (i = 0; i < 2; i++) {
4354       PetscCall(PetscStrncpy(convname, prefix[i], sizeof(convname)));
4355       PetscCall(PetscStrlcat(convname, newtype, sizeof(convname)));
4356       PetscCall(PetscStrcmp(convname, ((PetscObject)mat)->type_name, &flg));
4357       PetscCall(PetscInfo(mat, "Check superclass %s %s -> %d\n", convname, ((PetscObject)mat)->type_name, flg));
4358       if (flg) {
4359         if (reuse == MAT_INPLACE_MATRIX) {
4360           PetscCall(PetscInfo(mat, "Early return\n"));
4361           PetscFunctionReturn(PETSC_SUCCESS);
4362         } else if (reuse == MAT_INITIAL_MATRIX && mat->ops->duplicate) {
4363           PetscCall(PetscInfo(mat, "Calling MatDuplicate\n"));
4364           PetscUseTypeMethod(mat, duplicate, MAT_COPY_VALUES, M);
4365           PetscFunctionReturn(PETSC_SUCCESS);
4366         } else if (reuse == MAT_REUSE_MATRIX && mat->ops->copy) {
4367           PetscCall(PetscInfo(mat, "Calling MatCopy\n"));
4368           PetscCall(MatCopy(mat, *M, SAME_NONZERO_PATTERN));
4369           PetscFunctionReturn(PETSC_SUCCESS);
4370         }
4371       }
4372     }
4373     /* 1) See if a specialized converter is known to the current matrix and the desired class */
4374     for (i = 0; i < 3; i++) {
4375       PetscCall(PetscStrncpy(convname, "MatConvert_", sizeof(convname)));
4376       PetscCall(PetscStrlcat(convname, ((PetscObject)mat)->type_name, sizeof(convname)));
4377       PetscCall(PetscStrlcat(convname, "_", sizeof(convname)));
4378       PetscCall(PetscStrlcat(convname, prefix[i], sizeof(convname)));
4379       PetscCall(PetscStrlcat(convname, issame ? ((PetscObject)mat)->type_name : newtype, sizeof(convname)));
4380       PetscCall(PetscStrlcat(convname, "_C", sizeof(convname)));
4381       PetscCall(PetscObjectQueryFunction((PetscObject)mat, convname, &conv));
4382       PetscCall(PetscInfo(mat, "Check specialized (1) %s (%s) -> %d\n", convname, ((PetscObject)mat)->type_name, !!conv));
4383       if (conv) goto foundconv;
4384     }
4385 
4386     /* 2)  See if a specialized converter is known to the desired matrix class. */
4387     PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &B));
4388     PetscCall(MatSetSizes(B, mat->rmap->n, mat->cmap->n, mat->rmap->N, mat->cmap->N));
4389     PetscCall(MatSetType(B, newtype));
4390     for (i = 0; i < 3; i++) {
4391       PetscCall(PetscStrncpy(convname, "MatConvert_", sizeof(convname)));
4392       PetscCall(PetscStrlcat(convname, ((PetscObject)mat)->type_name, sizeof(convname)));
4393       PetscCall(PetscStrlcat(convname, "_", sizeof(convname)));
4394       PetscCall(PetscStrlcat(convname, prefix[i], sizeof(convname)));
4395       PetscCall(PetscStrlcat(convname, newtype, sizeof(convname)));
4396       PetscCall(PetscStrlcat(convname, "_C", sizeof(convname)));
4397       PetscCall(PetscObjectQueryFunction((PetscObject)B, convname, &conv));
4398       PetscCall(PetscInfo(mat, "Check specialized (2) %s (%s) -> %d\n", convname, ((PetscObject)B)->type_name, !!conv));
4399       if (conv) {
4400         PetscCall(MatDestroy(&B));
4401         goto foundconv;
4402       }
4403     }
4404 
4405     /* 3) See if a good general converter is registered for the desired class */
4406     conv = B->ops->convertfrom;
4407     PetscCall(PetscInfo(mat, "Check convertfrom (%s) -> %d\n", ((PetscObject)B)->type_name, !!conv));
4408     PetscCall(MatDestroy(&B));
4409     if (conv) goto foundconv;
4410 
4411     /* 4) See if a good general converter is known for the current matrix */
4412     if (mat->ops->convert) conv = mat->ops->convert;
4413     PetscCall(PetscInfo(mat, "Check general convert (%s) -> %d\n", ((PetscObject)mat)->type_name, !!conv));
4414     if (conv) goto foundconv;
4415 
4416     /* 5) Use a really basic converter. */
4417     PetscCall(PetscInfo(mat, "Using MatConvert_Basic\n"));
4418     conv = MatConvert_Basic;
4419 
4420   foundconv:
4421     PetscCall(PetscLogEventBegin(MAT_Convert, mat, 0, 0, 0));
4422     PetscCall((*conv)(mat, newtype, reuse, M));
4423     if (mat->rmap->mapping && mat->cmap->mapping && !(*M)->rmap->mapping && !(*M)->cmap->mapping) {
4424       /* the block sizes must be same if the mappings are copied over */
4425       (*M)->rmap->bs = mat->rmap->bs;
4426       (*M)->cmap->bs = mat->cmap->bs;
4427       PetscCall(PetscObjectReference((PetscObject)mat->rmap->mapping));
4428       PetscCall(PetscObjectReference((PetscObject)mat->cmap->mapping));
4429       (*M)->rmap->mapping = mat->rmap->mapping;
4430       (*M)->cmap->mapping = mat->cmap->mapping;
4431     }
4432     (*M)->stencil.dim = mat->stencil.dim;
4433     (*M)->stencil.noc = mat->stencil.noc;
4434     for (i = 0; i <= mat->stencil.dim + (mat->stencil.noc ? 0 : -1); i++) {
4435       (*M)->stencil.dims[i]   = mat->stencil.dims[i];
4436       (*M)->stencil.starts[i] = mat->stencil.starts[i];
4437     }
4438     PetscCall(PetscLogEventEnd(MAT_Convert, mat, 0, 0, 0));
4439   }
4440   PetscCall(PetscObjectStateIncrease((PetscObject)*M));
4441 
4442   /* Copy Mat options */
4443   if (issymmetric == PETSC_BOOL3_TRUE) PetscCall(MatSetOption(*M, MAT_SYMMETRIC, PETSC_TRUE));
4444   else if (issymmetric == PETSC_BOOL3_FALSE) PetscCall(MatSetOption(*M, MAT_SYMMETRIC, PETSC_FALSE));
4445   if (ishermitian == PETSC_BOOL3_TRUE) PetscCall(MatSetOption(*M, MAT_HERMITIAN, PETSC_TRUE));
4446   else if (ishermitian == PETSC_BOOL3_FALSE) PetscCall(MatSetOption(*M, MAT_HERMITIAN, PETSC_FALSE));
4447   PetscFunctionReturn(PETSC_SUCCESS);
4448 }
4449 
4450 /*@C
4451   MatFactorGetSolverType - Returns name of the package providing the factorization routines
4452 
4453   Not Collective
4454 
4455   Input Parameter:
4456 . mat - the matrix, must be a factored matrix
4457 
4458   Output Parameter:
4459 . type - the string name of the package (do not free this string)
4460 
4461   Level: intermediate
4462 
4463   Fortran Note:
4464   Pass in an empty string and the package name will be copied into it. Make sure the string is long enough.
4465 
4466 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatSolverType`, `MatCopy()`, `MatDuplicate()`, `MatGetFactorAvailable()`
4467 @*/
4468 PetscErrorCode MatFactorGetSolverType(Mat mat, MatSolverType *type)
4469 {
4470   PetscErrorCode (*conv)(Mat, MatSolverType *);
4471 
4472   PetscFunctionBegin;
4473   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
4474   PetscValidType(mat, 1);
4475   PetscAssertPointer(type, 2);
4476   PetscCheck(mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Only for factored matrix");
4477   PetscCall(PetscObjectQueryFunction((PetscObject)mat, "MatFactorGetSolverType_C", &conv));
4478   if (conv) PetscCall((*conv)(mat, type));
4479   else *type = MATSOLVERPETSC;
4480   PetscFunctionReturn(PETSC_SUCCESS);
4481 }
4482 
4483 typedef struct _MatSolverTypeForSpecifcType *MatSolverTypeForSpecifcType;
4484 struct _MatSolverTypeForSpecifcType {
4485   MatType mtype;
4486   /* no entry for MAT_FACTOR_NONE */
4487   PetscErrorCode (*createfactor[MAT_FACTOR_NUM_TYPES - 1])(Mat, MatFactorType, Mat *);
4488   MatSolverTypeForSpecifcType next;
4489 };
4490 
4491 typedef struct _MatSolverTypeHolder *MatSolverTypeHolder;
4492 struct _MatSolverTypeHolder {
4493   char                       *name;
4494   MatSolverTypeForSpecifcType handlers;
4495   MatSolverTypeHolder         next;
4496 };
4497 
4498 static MatSolverTypeHolder MatSolverTypeHolders = NULL;
4499 
4500 /*@C
4501   MatSolverTypeRegister - Registers a `MatSolverType` that works for a particular matrix type
4502 
4503   Input Parameters:
4504 + package      - name of the package, for example petsc or superlu
4505 . mtype        - the matrix type that works with this package
4506 . ftype        - the type of factorization supported by the package
4507 - createfactor - routine that will create the factored matrix ready to be used
4508 
4509   Level: developer
4510 
4511 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatFactorGetSolverType()`, `MatCopy()`, `MatDuplicate()`, `MatGetFactorAvailable()`, `MatGetFactor()`
4512 @*/
4513 PetscErrorCode MatSolverTypeRegister(MatSolverType package, MatType mtype, MatFactorType ftype, PetscErrorCode (*createfactor)(Mat, MatFactorType, Mat *))
4514 {
4515   MatSolverTypeHolder         next = MatSolverTypeHolders, prev = NULL;
4516   PetscBool                   flg;
4517   MatSolverTypeForSpecifcType inext, iprev = NULL;
4518 
4519   PetscFunctionBegin;
4520   PetscCall(MatInitializePackage());
4521   if (!next) {
4522     PetscCall(PetscNew(&MatSolverTypeHolders));
4523     PetscCall(PetscStrallocpy(package, &MatSolverTypeHolders->name));
4524     PetscCall(PetscNew(&MatSolverTypeHolders->handlers));
4525     PetscCall(PetscStrallocpy(mtype, (char **)&MatSolverTypeHolders->handlers->mtype));
4526     MatSolverTypeHolders->handlers->createfactor[(int)ftype - 1] = createfactor;
4527     PetscFunctionReturn(PETSC_SUCCESS);
4528   }
4529   while (next) {
4530     PetscCall(PetscStrcasecmp(package, next->name, &flg));
4531     if (flg) {
4532       PetscCheck(next->handlers, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MatSolverTypeHolder is missing handlers");
4533       inext = next->handlers;
4534       while (inext) {
4535         PetscCall(PetscStrcasecmp(mtype, inext->mtype, &flg));
4536         if (flg) {
4537           inext->createfactor[(int)ftype - 1] = createfactor;
4538           PetscFunctionReturn(PETSC_SUCCESS);
4539         }
4540         iprev = inext;
4541         inext = inext->next;
4542       }
4543       PetscCall(PetscNew(&iprev->next));
4544       PetscCall(PetscStrallocpy(mtype, (char **)&iprev->next->mtype));
4545       iprev->next->createfactor[(int)ftype - 1] = createfactor;
4546       PetscFunctionReturn(PETSC_SUCCESS);
4547     }
4548     prev = next;
4549     next = next->next;
4550   }
4551   PetscCall(PetscNew(&prev->next));
4552   PetscCall(PetscStrallocpy(package, &prev->next->name));
4553   PetscCall(PetscNew(&prev->next->handlers));
4554   PetscCall(PetscStrallocpy(mtype, (char **)&prev->next->handlers->mtype));
4555   prev->next->handlers->createfactor[(int)ftype - 1] = createfactor;
4556   PetscFunctionReturn(PETSC_SUCCESS);
4557 }
4558 
4559 /*@C
4560   MatSolverTypeGet - Gets the function that creates the factor matrix if it exist
4561 
4562   Input Parameters:
4563 + type  - name of the package, for example petsc or superlu
4564 . ftype - the type of factorization supported by the type
4565 - mtype - the matrix type that works with this type
4566 
4567   Output Parameters:
4568 + foundtype    - `PETSC_TRUE` if the type was registered
4569 . foundmtype   - `PETSC_TRUE` if the type supports the requested mtype
4570 - createfactor - routine that will create the factored matrix ready to be used or `NULL` if not found
4571 
4572   Level: developer
4573 
4574 .seealso: [](ch_matrices), `Mat`, `MatFactorType`, `MatType`, `MatCopy()`, `MatDuplicate()`, `MatGetFactorAvailable()`, `MatSolverTypeRegister()`, `MatGetFactor()`
4575 @*/
4576 PetscErrorCode MatSolverTypeGet(MatSolverType type, MatType mtype, MatFactorType ftype, PetscBool *foundtype, PetscBool *foundmtype, PetscErrorCode (**createfactor)(Mat, MatFactorType, Mat *))
4577 {
4578   MatSolverTypeHolder         next = MatSolverTypeHolders;
4579   PetscBool                   flg;
4580   MatSolverTypeForSpecifcType inext;
4581 
4582   PetscFunctionBegin;
4583   if (foundtype) *foundtype = PETSC_FALSE;
4584   if (foundmtype) *foundmtype = PETSC_FALSE;
4585   if (createfactor) *createfactor = NULL;
4586 
4587   if (type) {
4588     while (next) {
4589       PetscCall(PetscStrcasecmp(type, next->name, &flg));
4590       if (flg) {
4591         if (foundtype) *foundtype = PETSC_TRUE;
4592         inext = next->handlers;
4593         while (inext) {
4594           PetscCall(PetscStrbeginswith(mtype, inext->mtype, &flg));
4595           if (flg) {
4596             if (foundmtype) *foundmtype = PETSC_TRUE;
4597             if (createfactor) *createfactor = inext->createfactor[(int)ftype - 1];
4598             PetscFunctionReturn(PETSC_SUCCESS);
4599           }
4600           inext = inext->next;
4601         }
4602       }
4603       next = next->next;
4604     }
4605   } else {
4606     while (next) {
4607       inext = next->handlers;
4608       while (inext) {
4609         PetscCall(PetscStrcmp(mtype, inext->mtype, &flg));
4610         if (flg && inext->createfactor[(int)ftype - 1]) {
4611           if (foundtype) *foundtype = PETSC_TRUE;
4612           if (foundmtype) *foundmtype = PETSC_TRUE;
4613           if (createfactor) *createfactor = inext->createfactor[(int)ftype - 1];
4614           PetscFunctionReturn(PETSC_SUCCESS);
4615         }
4616         inext = inext->next;
4617       }
4618       next = next->next;
4619     }
4620     /* try with base classes inext->mtype */
4621     next = MatSolverTypeHolders;
4622     while (next) {
4623       inext = next->handlers;
4624       while (inext) {
4625         PetscCall(PetscStrbeginswith(mtype, inext->mtype, &flg));
4626         if (flg && inext->createfactor[(int)ftype - 1]) {
4627           if (foundtype) *foundtype = PETSC_TRUE;
4628           if (foundmtype) *foundmtype = PETSC_TRUE;
4629           if (createfactor) *createfactor = inext->createfactor[(int)ftype - 1];
4630           PetscFunctionReturn(PETSC_SUCCESS);
4631         }
4632         inext = inext->next;
4633       }
4634       next = next->next;
4635     }
4636   }
4637   PetscFunctionReturn(PETSC_SUCCESS);
4638 }
4639 
4640 PetscErrorCode MatSolverTypeDestroy(void)
4641 {
4642   MatSolverTypeHolder         next = MatSolverTypeHolders, prev;
4643   MatSolverTypeForSpecifcType inext, iprev;
4644 
4645   PetscFunctionBegin;
4646   while (next) {
4647     PetscCall(PetscFree(next->name));
4648     inext = next->handlers;
4649     while (inext) {
4650       PetscCall(PetscFree(inext->mtype));
4651       iprev = inext;
4652       inext = inext->next;
4653       PetscCall(PetscFree(iprev));
4654     }
4655     prev = next;
4656     next = next->next;
4657     PetscCall(PetscFree(prev));
4658   }
4659   MatSolverTypeHolders = NULL;
4660   PetscFunctionReturn(PETSC_SUCCESS);
4661 }
4662 
4663 /*@C
4664   MatFactorGetCanUseOrdering - Indicates if the factorization can use the ordering provided in `MatLUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`
4665 
4666   Logically Collective
4667 
4668   Input Parameter:
4669 . mat - the matrix
4670 
4671   Output Parameter:
4672 . flg - `PETSC_TRUE` if uses the ordering
4673 
4674   Level: developer
4675 
4676   Note:
4677   Most internal PETSc factorizations use the ordering passed to the factorization routine but external
4678   packages do not, thus we want to skip generating the ordering when it is not needed or used.
4679 
4680 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatCopy()`, `MatDuplicate()`, `MatGetFactorAvailable()`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`
4681 @*/
4682 PetscErrorCode MatFactorGetCanUseOrdering(Mat mat, PetscBool *flg)
4683 {
4684   PetscFunctionBegin;
4685   *flg = mat->canuseordering;
4686   PetscFunctionReturn(PETSC_SUCCESS);
4687 }
4688 
4689 /*@C
4690   MatFactorGetPreferredOrdering - The preferred ordering for a particular matrix factor object
4691 
4692   Logically Collective
4693 
4694   Input Parameters:
4695 + mat   - the matrix obtained with `MatGetFactor()`
4696 - ftype - the factorization type to be used
4697 
4698   Output Parameter:
4699 . otype - the preferred ordering type
4700 
4701   Level: developer
4702 
4703 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatFactorType`, `MatOrderingType`, `MatCopy()`, `MatDuplicate()`, `MatGetFactorAvailable()`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`
4704 @*/
4705 PetscErrorCode MatFactorGetPreferredOrdering(Mat mat, MatFactorType ftype, MatOrderingType *otype)
4706 {
4707   PetscFunctionBegin;
4708   *otype = mat->preferredordering[ftype];
4709   PetscCheck(*otype, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MatFactor did not have a preferred ordering");
4710   PetscFunctionReturn(PETSC_SUCCESS);
4711 }
4712 
4713 /*@C
4714   MatGetFactor - Returns a matrix suitable to calls to MatXXFactorSymbolic()
4715 
4716   Collective
4717 
4718   Input Parameters:
4719 + mat   - the matrix
4720 . type  - name of solver type, for example, superlu, petsc (to use PETSc's default)
4721 - ftype - factor type, `MAT_FACTOR_LU`, `MAT_FACTOR_CHOLESKY`, `MAT_FACTOR_ICC`, `MAT_FACTOR_ILU`, `MAT_FACTOR_QR`
4722 
4723   Output Parameter:
4724 . f - the factor matrix used with MatXXFactorSymbolic() calls. Can be `NULL` in some cases, see notes below.
4725 
4726   Options Database Key:
4727 . -mat_factor_bind_factorization <host, device> - Where to do matrix factorization? Default is device (might consume more device memory.
4728                                   One can choose host to save device memory). Currently only supported with `MATSEQAIJCUSPARSE` matrices.
4729 
4730   Level: intermediate
4731 
4732   Notes:
4733   The return matrix can be `NULL` if the requested factorization is not available, since some combinations of matrix types and factorization
4734   types registered with `MatSolverTypeRegister()` cannot be fully tested if not at runtime.
4735 
4736   Users usually access the factorization solvers via `KSP`
4737 
4738   Some PETSc matrix formats have alternative solvers available that are contained in alternative packages
4739   such as pastix, superlu, mumps etc.
4740 
4741   PETSc must have been ./configure to use the external solver, using the option --download-package
4742 
4743   Some of the packages have options for controlling the factorization, these are in the form -prefix_mat_packagename_packageoption
4744   where prefix is normally obtained from the calling `KSP`/`PC`. If `MatGetFactor()` is called directly one can set
4745   call `MatSetOptionsPrefixFactor()` on the originating matrix or  `MatSetOptionsPrefix()` on the resulting factor matrix.
4746 
4747   Developer Note:
4748   This should actually be called `MatCreateFactor()` since it creates a new factor object
4749 
4750 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `KSP`, `MatSolverType`, `MatFactorType`, `MatCopy()`, `MatDuplicate()`, `MatGetFactorAvailable()`, `MatFactorGetCanUseOrdering()`, `MatSolverTypeRegister()`,
4751           `MAT_FACTOR_LU`, `MAT_FACTOR_CHOLESKY`, `MAT_FACTOR_ICC`, `MAT_FACTOR_ILU`, `MAT_FACTOR_QR`
4752 @*/
4753 PetscErrorCode MatGetFactor(Mat mat, MatSolverType type, MatFactorType ftype, Mat *f)
4754 {
4755   PetscBool foundtype, foundmtype;
4756   PetscErrorCode (*conv)(Mat, MatFactorType, Mat *);
4757 
4758   PetscFunctionBegin;
4759   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
4760   PetscValidType(mat, 1);
4761 
4762   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
4763   MatCheckPreallocated(mat, 1);
4764 
4765   PetscCall(MatSolverTypeGet(type, ((PetscObject)mat)->type_name, ftype, &foundtype, &foundmtype, &conv));
4766   if (!foundtype) {
4767     if (type) {
4768       SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_MISSING_FACTOR, "Could not locate solver type %s for factorization type %s and matrix type %s. Perhaps you must ./configure with --download-%s", type, MatFactorTypes[ftype],
4769               ((PetscObject)mat)->type_name, type);
4770     } else {
4771       SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_MISSING_FACTOR, "Could not locate a solver type for factorization type %s and matrix type %s.", MatFactorTypes[ftype], ((PetscObject)mat)->type_name);
4772     }
4773   }
4774   PetscCheck(foundmtype, PetscObjectComm((PetscObject)mat), PETSC_ERR_MISSING_FACTOR, "MatSolverType %s does not support matrix type %s", type, ((PetscObject)mat)->type_name);
4775   PetscCheck(conv, PetscObjectComm((PetscObject)mat), PETSC_ERR_MISSING_FACTOR, "MatSolverType %s does not support factorization type %s for matrix type %s", type, MatFactorTypes[ftype], ((PetscObject)mat)->type_name);
4776 
4777   PetscCall((*conv)(mat, ftype, f));
4778   if (mat->factorprefix) PetscCall(MatSetOptionsPrefix(*f, mat->factorprefix));
4779   PetscFunctionReturn(PETSC_SUCCESS);
4780 }
4781 
4782 /*@C
4783   MatGetFactorAvailable - Returns a a flag if matrix supports particular type and factor type
4784 
4785   Not Collective
4786 
4787   Input Parameters:
4788 + mat   - the matrix
4789 . type  - name of solver type, for example, superlu, petsc (to use PETSc's default)
4790 - ftype - factor type, `MAT_FACTOR_LU`, `MAT_FACTOR_CHOLESKY`, `MAT_FACTOR_ICC`, `MAT_FACTOR_ILU`, `MAT_FACTOR_QR`
4791 
4792   Output Parameter:
4793 . flg - PETSC_TRUE if the factorization is available
4794 
4795   Level: intermediate
4796 
4797   Notes:
4798   Some PETSc matrix formats have alternative solvers available that are contained in alternative packages
4799   such as pastix, superlu, mumps etc.
4800 
4801   PETSc must have been ./configure to use the external solver, using the option --download-package
4802 
4803   Developer Note:
4804   This should actually be called `MatCreateFactorAvailable()` since `MatGetFactor()` creates a new factor object
4805 
4806 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatSolverType`, `MatFactorType`, `MatGetFactor()`, `MatCopy()`, `MatDuplicate()`, `MatSolverTypeRegister()`,
4807           `MAT_FACTOR_LU`, `MAT_FACTOR_CHOLESKY`, `MAT_FACTOR_ICC`, `MAT_FACTOR_ILU`, `MAT_FACTOR_QR`
4808 @*/
4809 PetscErrorCode MatGetFactorAvailable(Mat mat, MatSolverType type, MatFactorType ftype, PetscBool *flg)
4810 {
4811   PetscErrorCode (*gconv)(Mat, MatFactorType, Mat *);
4812 
4813   PetscFunctionBegin;
4814   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
4815   PetscValidType(mat, 1);
4816   PetscAssertPointer(flg, 4);
4817 
4818   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
4819   MatCheckPreallocated(mat, 1);
4820 
4821   PetscCall(MatSolverTypeGet(type, ((PetscObject)mat)->type_name, ftype, NULL, NULL, &gconv));
4822   *flg = gconv ? PETSC_TRUE : PETSC_FALSE;
4823   PetscFunctionReturn(PETSC_SUCCESS);
4824 }
4825 
4826 /*@
4827   MatDuplicate - Duplicates a matrix including the non-zero structure.
4828 
4829   Collective
4830 
4831   Input Parameters:
4832 + mat - the matrix
4833 - op  - One of `MAT_DO_NOT_COPY_VALUES`, `MAT_COPY_VALUES`, or `MAT_SHARE_NONZERO_PATTERN`.
4834         See the manual page for `MatDuplicateOption()` for an explanation of these options.
4835 
4836   Output Parameter:
4837 . M - pointer to place new matrix
4838 
4839   Level: intermediate
4840 
4841   Notes:
4842   You cannot change the nonzero pattern for the parent or child matrix later if you use `MAT_SHARE_NONZERO_PATTERN`.
4843 
4844   If `op` is not `MAT_COPY_VALUES` the numerical values in the new matrix are zeroed.
4845 
4846   May be called with an unassembled input `Mat` if `MAT_DO_NOT_COPY_VALUES` is used, in which case the output `Mat` is unassembled as well.
4847 
4848   When original mat is a product of matrix operation, e.g., an output of `MatMatMult()` or `MatCreateSubMatrix()`, only the matrix data structure of `mat`
4849   is duplicated and the internal data structures created for the reuse of previous matrix operations are not duplicated.
4850   User should not use `MatDuplicate()` to create new matrix `M` if `M` is intended to be reused as the product of matrix operation.
4851 
4852 .seealso: [](ch_matrices), `Mat`, `MatCopy()`, `MatConvert()`, `MatDuplicateOption`
4853 @*/
4854 PetscErrorCode MatDuplicate(Mat mat, MatDuplicateOption op, Mat *M)
4855 {
4856   Mat         B;
4857   VecType     vtype;
4858   PetscInt    i;
4859   PetscObject dm, container_h, container_d;
4860   void (*viewf)(void);
4861 
4862   PetscFunctionBegin;
4863   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
4864   PetscValidType(mat, 1);
4865   PetscAssertPointer(M, 3);
4866   PetscCheck(op != MAT_COPY_VALUES || mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "MAT_COPY_VALUES not allowed for unassembled matrix");
4867   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
4868   MatCheckPreallocated(mat, 1);
4869 
4870   *M = NULL;
4871   PetscCall(PetscLogEventBegin(MAT_Convert, mat, 0, 0, 0));
4872   PetscUseTypeMethod(mat, duplicate, op, M);
4873   PetscCall(PetscLogEventEnd(MAT_Convert, mat, 0, 0, 0));
4874   B = *M;
4875 
4876   PetscCall(MatGetOperation(mat, MATOP_VIEW, &viewf));
4877   if (viewf) PetscCall(MatSetOperation(B, MATOP_VIEW, viewf));
4878   PetscCall(MatGetVecType(mat, &vtype));
4879   PetscCall(MatSetVecType(B, vtype));
4880 
4881   B->stencil.dim = mat->stencil.dim;
4882   B->stencil.noc = mat->stencil.noc;
4883   for (i = 0; i <= mat->stencil.dim + (mat->stencil.noc ? 0 : -1); i++) {
4884     B->stencil.dims[i]   = mat->stencil.dims[i];
4885     B->stencil.starts[i] = mat->stencil.starts[i];
4886   }
4887 
4888   B->nooffproczerorows = mat->nooffproczerorows;
4889   B->nooffprocentries  = mat->nooffprocentries;
4890 
4891   PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_dm", &dm));
4892   if (dm) PetscCall(PetscObjectCompose((PetscObject)B, "__PETSc_dm", dm));
4893   PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", &container_h));
4894   if (container_h) PetscCall(PetscObjectCompose((PetscObject)B, "__PETSc_MatCOOStruct_Host", container_h));
4895   PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Device", &container_d));
4896   if (container_d) PetscCall(PetscObjectCompose((PetscObject)B, "__PETSc_MatCOOStruct_Device", container_d));
4897   PetscCall(PetscObjectStateIncrease((PetscObject)B));
4898   PetscFunctionReturn(PETSC_SUCCESS);
4899 }
4900 
4901 /*@
4902   MatGetDiagonal - Gets the diagonal of a matrix as a `Vec`
4903 
4904   Logically Collective
4905 
4906   Input Parameter:
4907 . mat - the matrix
4908 
4909   Output Parameter:
4910 . v - the diagonal of the matrix
4911 
4912   Level: intermediate
4913 
4914   Note:
4915   If `mat` has local sizes `n` x `m`, this routine fills the first `ndiag = min(n, m)` entries
4916   of `v` with the diagonal values. Thus `v` must have local size of at least `ndiag`. If `v`
4917   is larger than `ndiag`, the values of the remaining entries are unspecified.
4918 
4919   Currently only correct in parallel for square matrices.
4920 
4921 .seealso: [](ch_matrices), `Mat`, `Vec`, `MatGetRow()`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatGetRowMaxAbs()`
4922 @*/
4923 PetscErrorCode MatGetDiagonal(Mat mat, Vec v)
4924 {
4925   PetscFunctionBegin;
4926   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
4927   PetscValidType(mat, 1);
4928   PetscValidHeaderSpecific(v, VEC_CLASSID, 2);
4929   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
4930   MatCheckPreallocated(mat, 1);
4931   if (PetscDefined(USE_DEBUG)) {
4932     PetscInt nv, row, col, ndiag;
4933 
4934     PetscCall(VecGetLocalSize(v, &nv));
4935     PetscCall(MatGetLocalSize(mat, &row, &col));
4936     ndiag = PetscMin(row, col);
4937     PetscCheck(nv >= ndiag, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Nonconforming Mat and Vec. Vec local size %" PetscInt_FMT " < Mat local diagonal length %" PetscInt_FMT, nv, ndiag);
4938   }
4939 
4940   PetscUseTypeMethod(mat, getdiagonal, v);
4941   PetscCall(PetscObjectStateIncrease((PetscObject)v));
4942   PetscFunctionReturn(PETSC_SUCCESS);
4943 }
4944 
4945 /*@C
4946   MatGetRowMin - Gets the minimum value (of the real part) of each
4947   row of the matrix
4948 
4949   Logically Collective
4950 
4951   Input Parameter:
4952 . mat - the matrix
4953 
4954   Output Parameters:
4955 + v   - the vector for storing the maximums
4956 - idx - the indices of the column found for each row (optional)
4957 
4958   Level: intermediate
4959 
4960   Note:
4961   The result of this call are the same as if one converted the matrix to dense format
4962   and found the minimum value in each row (i.e. the implicit zeros are counted as zeros).
4963 
4964   This code is only implemented for a couple of matrix formats.
4965 
4966 .seealso: [](ch_matrices), `Mat`, `MatGetDiagonal()`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatGetRowMaxAbs()`, `MatGetRowMinAbs()`,
4967           `MatGetRowMax()`
4968 @*/
4969 PetscErrorCode MatGetRowMin(Mat mat, Vec v, PetscInt idx[])
4970 {
4971   PetscFunctionBegin;
4972   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
4973   PetscValidType(mat, 1);
4974   PetscValidHeaderSpecific(v, VEC_CLASSID, 2);
4975   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
4976 
4977   if (!mat->cmap->N) {
4978     PetscCall(VecSet(v, PETSC_MAX_REAL));
4979     if (idx) {
4980       PetscInt i, m = mat->rmap->n;
4981       for (i = 0; i < m; i++) idx[i] = -1;
4982     }
4983   } else {
4984     MatCheckPreallocated(mat, 1);
4985   }
4986   PetscUseTypeMethod(mat, getrowmin, v, idx);
4987   PetscCall(PetscObjectStateIncrease((PetscObject)v));
4988   PetscFunctionReturn(PETSC_SUCCESS);
4989 }
4990 
4991 /*@C
4992   MatGetRowMinAbs - Gets the minimum value (in absolute value) of each
4993   row of the matrix
4994 
4995   Logically Collective
4996 
4997   Input Parameter:
4998 . mat - the matrix
4999 
5000   Output Parameters:
5001 + v   - the vector for storing the minimums
5002 - idx - the indices of the column found for each row (or `NULL` if not needed)
5003 
5004   Level: intermediate
5005 
5006   Notes:
5007   if a row is completely empty or has only 0.0 values then the `idx` value for that
5008   row is 0 (the first column).
5009 
5010   This code is only implemented for a couple of matrix formats.
5011 
5012 .seealso: [](ch_matrices), `Mat`, `MatGetDiagonal()`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatGetRowMax()`, `MatGetRowMaxAbs()`, `MatGetRowMin()`
5013 @*/
5014 PetscErrorCode MatGetRowMinAbs(Mat mat, Vec v, PetscInt idx[])
5015 {
5016   PetscFunctionBegin;
5017   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
5018   PetscValidType(mat, 1);
5019   PetscValidHeaderSpecific(v, VEC_CLASSID, 2);
5020   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
5021   PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
5022 
5023   if (!mat->cmap->N) {
5024     PetscCall(VecSet(v, 0.0));
5025     if (idx) {
5026       PetscInt i, m = mat->rmap->n;
5027       for (i = 0; i < m; i++) idx[i] = -1;
5028     }
5029   } else {
5030     MatCheckPreallocated(mat, 1);
5031     if (idx) PetscCall(PetscArrayzero(idx, mat->rmap->n));
5032     PetscUseTypeMethod(mat, getrowminabs, v, idx);
5033   }
5034   PetscCall(PetscObjectStateIncrease((PetscObject)v));
5035   PetscFunctionReturn(PETSC_SUCCESS);
5036 }
5037 
5038 /*@C
5039   MatGetRowMax - Gets the maximum value (of the real part) of each
5040   row of the matrix
5041 
5042   Logically Collective
5043 
5044   Input Parameter:
5045 . mat - the matrix
5046 
5047   Output Parameters:
5048 + v   - the vector for storing the maximums
5049 - idx - the indices of the column found for each row (optional)
5050 
5051   Level: intermediate
5052 
5053   Notes:
5054   The result of this call are the same as if one converted the matrix to dense format
5055   and found the minimum value in each row (i.e. the implicit zeros are counted as zeros).
5056 
5057   This code is only implemented for a couple of matrix formats.
5058 
5059 .seealso: [](ch_matrices), `Mat`, `MatGetDiagonal()`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatGetRowMaxAbs()`, `MatGetRowMin()`, `MatGetRowMinAbs()`
5060 @*/
5061 PetscErrorCode MatGetRowMax(Mat mat, Vec v, PetscInt idx[])
5062 {
5063   PetscFunctionBegin;
5064   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
5065   PetscValidType(mat, 1);
5066   PetscValidHeaderSpecific(v, VEC_CLASSID, 2);
5067   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
5068 
5069   if (!mat->cmap->N) {
5070     PetscCall(VecSet(v, PETSC_MIN_REAL));
5071     if (idx) {
5072       PetscInt i, m = mat->rmap->n;
5073       for (i = 0; i < m; i++) idx[i] = -1;
5074     }
5075   } else {
5076     MatCheckPreallocated(mat, 1);
5077     PetscUseTypeMethod(mat, getrowmax, v, idx);
5078   }
5079   PetscCall(PetscObjectStateIncrease((PetscObject)v));
5080   PetscFunctionReturn(PETSC_SUCCESS);
5081 }
5082 
5083 /*@C
5084   MatGetRowMaxAbs - Gets the maximum value (in absolute value) of each
5085   row of the matrix
5086 
5087   Logically Collective
5088 
5089   Input Parameter:
5090 . mat - the matrix
5091 
5092   Output Parameters:
5093 + v   - the vector for storing the maximums
5094 - idx - the indices of the column found for each row (or `NULL` if not needed)
5095 
5096   Level: intermediate
5097 
5098   Notes:
5099   if a row is completely empty or has only 0.0 values then the `idx` value for that
5100   row is 0 (the first column).
5101 
5102   This code is only implemented for a couple of matrix formats.
5103 
5104 .seealso: [](ch_matrices), `Mat`, `MatGetDiagonal()`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatGetRowMax()`, `MatGetRowMin()`, `MatGetRowMinAbs()`
5105 @*/
5106 PetscErrorCode MatGetRowMaxAbs(Mat mat, Vec v, PetscInt idx[])
5107 {
5108   PetscFunctionBegin;
5109   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
5110   PetscValidType(mat, 1);
5111   PetscValidHeaderSpecific(v, VEC_CLASSID, 2);
5112   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
5113 
5114   if (!mat->cmap->N) {
5115     PetscCall(VecSet(v, 0.0));
5116     if (idx) {
5117       PetscInt i, m = mat->rmap->n;
5118       for (i = 0; i < m; i++) idx[i] = -1;
5119     }
5120   } else {
5121     MatCheckPreallocated(mat, 1);
5122     if (idx) PetscCall(PetscArrayzero(idx, mat->rmap->n));
5123     PetscUseTypeMethod(mat, getrowmaxabs, v, idx);
5124   }
5125   PetscCall(PetscObjectStateIncrease((PetscObject)v));
5126   PetscFunctionReturn(PETSC_SUCCESS);
5127 }
5128 
5129 /*@
5130   MatGetRowSum - Gets the sum of each row of the matrix
5131 
5132   Logically or Neighborhood Collective
5133 
5134   Input Parameter:
5135 . mat - the matrix
5136 
5137   Output Parameter:
5138 . v - the vector for storing the sum of rows
5139 
5140   Level: intermediate
5141 
5142   Note:
5143   This code is slow since it is not currently specialized for different formats
5144 
5145 .seealso: [](ch_matrices), `Mat`, `MatGetDiagonal()`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatGetRowMax()`, `MatGetRowMin()`, `MatGetRowMaxAbs()`, `MatGetRowMinAbs()`
5146 @*/
5147 PetscErrorCode MatGetRowSum(Mat mat, Vec v)
5148 {
5149   Vec ones;
5150 
5151   PetscFunctionBegin;
5152   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
5153   PetscValidType(mat, 1);
5154   PetscValidHeaderSpecific(v, VEC_CLASSID, 2);
5155   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
5156   MatCheckPreallocated(mat, 1);
5157   PetscCall(MatCreateVecs(mat, &ones, NULL));
5158   PetscCall(VecSet(ones, 1.));
5159   PetscCall(MatMult(mat, ones, v));
5160   PetscCall(VecDestroy(&ones));
5161   PetscFunctionReturn(PETSC_SUCCESS);
5162 }
5163 
5164 /*@
5165   MatTransposeSetPrecursor - Set the matrix from which the second matrix will receive numerical transpose data with a call to `MatTranspose`(A,`MAT_REUSE_MATRIX`,&B)
5166   when B was not obtained with `MatTranspose`(A,`MAT_INITIAL_MATRIX`,&B)
5167 
5168   Collective
5169 
5170   Input Parameter:
5171 . mat - the matrix to provide the transpose
5172 
5173   Output Parameter:
5174 . B - the matrix to contain the transpose; it MUST have the nonzero structure of the transpose of A or the code will crash or generate incorrect results
5175 
5176   Level: advanced
5177 
5178   Note:
5179   Normally the use of `MatTranspose`(A, `MAT_REUSE_MATRIX`, &B) requires that `B` was obtained with a call to `MatTranspose`(A, `MAT_INITIAL_MATRIX`, &B). This
5180   routine allows bypassing that call.
5181 
5182 .seealso: [](ch_matrices), `Mat`, `MatTransposeSymbolic()`, `MatTranspose()`, `MatMultTranspose()`, `MatMultTransposeAdd()`, `MatIsTranspose()`, `MatReuse`, `MAT_INITIAL_MATRIX`, `MAT_REUSE_MATRIX`, `MAT_INPLACE_MATRIX`
5183 @*/
5184 PetscErrorCode MatTransposeSetPrecursor(Mat mat, Mat B)
5185 {
5186   PetscContainer  rB = NULL;
5187   MatParentState *rb = NULL;
5188 
5189   PetscFunctionBegin;
5190   PetscCall(PetscNew(&rb));
5191   rb->id    = ((PetscObject)mat)->id;
5192   rb->state = 0;
5193   PetscCall(MatGetNonzeroState(mat, &rb->nonzerostate));
5194   PetscCall(PetscContainerCreate(PetscObjectComm((PetscObject)B), &rB));
5195   PetscCall(PetscContainerSetPointer(rB, rb));
5196   PetscCall(PetscContainerSetUserDestroy(rB, PetscContainerUserDestroyDefault));
5197   PetscCall(PetscObjectCompose((PetscObject)B, "MatTransposeParent", (PetscObject)rB));
5198   PetscCall(PetscObjectDereference((PetscObject)rB));
5199   PetscFunctionReturn(PETSC_SUCCESS);
5200 }
5201 
5202 /*@
5203   MatTranspose - Computes an in-place or out-of-place transpose of a matrix.
5204 
5205   Collective
5206 
5207   Input Parameters:
5208 + mat   - the matrix to transpose
5209 - reuse - either `MAT_INITIAL_MATRIX`, `MAT_REUSE_MATRIX`, or `MAT_INPLACE_MATRIX`
5210 
5211   Output Parameter:
5212 . B - the transpose
5213 
5214   Level: intermediate
5215 
5216   Notes:
5217   If you use `MAT_INPLACE_MATRIX` then you must pass in `&mat` for `B`
5218 
5219   `MAT_REUSE_MATRIX` uses the `B` matrix obtained from a previous call to this function with `MAT_INITIAL_MATRIX`. If you already have a matrix to contain the
5220   transpose, call `MatTransposeSetPrecursor(mat, B)` before calling this routine.
5221 
5222   If the nonzero structure of mat changed from the previous call to this function with the same matrices an error will be generated for some matrix types.
5223 
5224   Consider using `MatCreateTranspose()` instead if you only need a matrix that behaves like the transpose, but don't need the storage to be changed.
5225 
5226   If mat is unchanged from the last call this function returns immediately without recomputing the result
5227 
5228   If you only need the symbolic transpose, and not the numerical values, use `MatTransposeSymbolic()`
5229 
5230 .seealso: [](ch_matrices), `Mat`, `MatTransposeSetPrecursor()`, `MatMultTranspose()`, `MatMultTransposeAdd()`, `MatIsTranspose()`, `MatReuse`, `MAT_INITIAL_MATRIX`, `MAT_REUSE_MATRIX`, `MAT_INPLACE_MATRIX`,
5231           `MatTransposeSymbolic()`, `MatCreateTranspose()`
5232 @*/
5233 PetscErrorCode MatTranspose(Mat mat, MatReuse reuse, Mat *B)
5234 {
5235   PetscContainer  rB = NULL;
5236   MatParentState *rb = NULL;
5237 
5238   PetscFunctionBegin;
5239   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
5240   PetscValidType(mat, 1);
5241   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
5242   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
5243   PetscCheck(reuse != MAT_INPLACE_MATRIX || mat == *B, PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "MAT_INPLACE_MATRIX requires last matrix to match first");
5244   PetscCheck(reuse != MAT_REUSE_MATRIX || mat != *B, PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "Perhaps you mean MAT_INPLACE_MATRIX");
5245   MatCheckPreallocated(mat, 1);
5246   if (reuse == MAT_REUSE_MATRIX) {
5247     PetscCall(PetscObjectQuery((PetscObject)*B, "MatTransposeParent", (PetscObject *)&rB));
5248     PetscCheck(rB, PetscObjectComm((PetscObject)*B), PETSC_ERR_ARG_WRONG, "Reuse matrix used was not generated from call to MatTranspose(). Suggest MatTransposeSetPrecursor().");
5249     PetscCall(PetscContainerGetPointer(rB, (void **)&rb));
5250     PetscCheck(rb->id == ((PetscObject)mat)->id, PetscObjectComm((PetscObject)*B), PETSC_ERR_ARG_WRONG, "Reuse matrix used was not generated from input matrix");
5251     if (rb->state == ((PetscObject)mat)->state) PetscFunctionReturn(PETSC_SUCCESS);
5252   }
5253 
5254   PetscCall(PetscLogEventBegin(MAT_Transpose, mat, 0, 0, 0));
5255   if (reuse != MAT_INPLACE_MATRIX || mat->symmetric != PETSC_BOOL3_TRUE) {
5256     PetscUseTypeMethod(mat, transpose, reuse, B);
5257     PetscCall(PetscObjectStateIncrease((PetscObject)*B));
5258   }
5259   PetscCall(PetscLogEventEnd(MAT_Transpose, mat, 0, 0, 0));
5260 
5261   if (reuse == MAT_INITIAL_MATRIX) PetscCall(MatTransposeSetPrecursor(mat, *B));
5262   if (reuse != MAT_INPLACE_MATRIX) {
5263     PetscCall(PetscObjectQuery((PetscObject)*B, "MatTransposeParent", (PetscObject *)&rB));
5264     PetscCall(PetscContainerGetPointer(rB, (void **)&rb));
5265     rb->state        = ((PetscObject)mat)->state;
5266     rb->nonzerostate = mat->nonzerostate;
5267   }
5268   PetscFunctionReturn(PETSC_SUCCESS);
5269 }
5270 
5271 /*@
5272   MatTransposeSymbolic - Computes the symbolic part of the transpose of a matrix.
5273 
5274   Collective
5275 
5276   Input Parameter:
5277 . A - the matrix to transpose
5278 
5279   Output Parameter:
5280 . B - the transpose. This is a complete matrix but the numerical portion is invalid. One can call `MatTranspose`(A,`MAT_REUSE_MATRIX`,&B) to compute the
5281       numerical portion.
5282 
5283   Level: intermediate
5284 
5285   Note:
5286   This is not supported for many matrix types, use `MatTranspose()` in those cases
5287 
5288 .seealso: [](ch_matrices), `Mat`, `MatTransposeSetPrecursor()`, `MatTranspose()`, `MatMultTranspose()`, `MatMultTransposeAdd()`, `MatIsTranspose()`, `MatReuse`, `MAT_INITIAL_MATRIX`, `MAT_REUSE_MATRIX`, `MAT_INPLACE_MATRIX`
5289 @*/
5290 PetscErrorCode MatTransposeSymbolic(Mat A, Mat *B)
5291 {
5292   PetscFunctionBegin;
5293   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
5294   PetscValidType(A, 1);
5295   PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
5296   PetscCheck(!A->factortype, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
5297   PetscCall(PetscLogEventBegin(MAT_Transpose, A, 0, 0, 0));
5298   PetscUseTypeMethod(A, transposesymbolic, B);
5299   PetscCall(PetscLogEventEnd(MAT_Transpose, A, 0, 0, 0));
5300 
5301   PetscCall(MatTransposeSetPrecursor(A, *B));
5302   PetscFunctionReturn(PETSC_SUCCESS);
5303 }
5304 
5305 PetscErrorCode MatTransposeCheckNonzeroState_Private(Mat A, Mat B)
5306 {
5307   PetscContainer  rB;
5308   MatParentState *rb;
5309 
5310   PetscFunctionBegin;
5311   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
5312   PetscValidType(A, 1);
5313   PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
5314   PetscCheck(!A->factortype, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
5315   PetscCall(PetscObjectQuery((PetscObject)B, "MatTransposeParent", (PetscObject *)&rB));
5316   PetscCheck(rB, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_WRONG, "Reuse matrix used was not generated from call to MatTranspose()");
5317   PetscCall(PetscContainerGetPointer(rB, (void **)&rb));
5318   PetscCheck(rb->id == ((PetscObject)A)->id, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_WRONG, "Reuse matrix used was not generated from input matrix");
5319   PetscCheck(rb->nonzerostate == A->nonzerostate, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_WRONGSTATE, "Reuse matrix has changed nonzero structure");
5320   PetscFunctionReturn(PETSC_SUCCESS);
5321 }
5322 
5323 /*@
5324   MatIsTranspose - Test whether a matrix is another one's transpose,
5325   or its own, in which case it tests symmetry.
5326 
5327   Collective
5328 
5329   Input Parameters:
5330 + A   - the matrix to test
5331 . B   - the matrix to test against, this can equal the first parameter
5332 - tol - tolerance, differences between entries smaller than this are counted as zero
5333 
5334   Output Parameter:
5335 . flg - the result
5336 
5337   Level: intermediate
5338 
5339   Notes:
5340   Only available for `MATAIJ` matrices.
5341 
5342   The sequential algorithm has a running time of the order of the number of nonzeros; the parallel
5343   test involves parallel copies of the block off-diagonal parts of the matrix.
5344 
5345 .seealso: [](ch_matrices), `Mat`, `MatTranspose()`, `MatIsSymmetric()`, `MatIsHermitian()`
5346 @*/
5347 PetscErrorCode MatIsTranspose(Mat A, Mat B, PetscReal tol, PetscBool *flg)
5348 {
5349   PetscErrorCode (*f)(Mat, Mat, PetscReal, PetscBool *), (*g)(Mat, Mat, PetscReal, PetscBool *);
5350 
5351   PetscFunctionBegin;
5352   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
5353   PetscValidHeaderSpecific(B, MAT_CLASSID, 2);
5354   PetscAssertPointer(flg, 4);
5355   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatIsTranspose_C", &f));
5356   PetscCall(PetscObjectQueryFunction((PetscObject)B, "MatIsTranspose_C", &g));
5357   *flg = PETSC_FALSE;
5358   if (f && g) {
5359     PetscCheck(f == g, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_NOTSAMETYPE, "Matrices do not have the same comparator for symmetry test");
5360     PetscCall((*f)(A, B, tol, flg));
5361   } else {
5362     MatType mattype;
5363 
5364     PetscCall(MatGetType(f ? B : A, &mattype));
5365     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Matrix of type %s does not support checking for transpose", mattype);
5366   }
5367   PetscFunctionReturn(PETSC_SUCCESS);
5368 }
5369 
5370 /*@
5371   MatHermitianTranspose - Computes an in-place or out-of-place Hermitian transpose of a matrix in complex conjugate.
5372 
5373   Collective
5374 
5375   Input Parameters:
5376 + mat   - the matrix to transpose and complex conjugate
5377 - reuse - either `MAT_INITIAL_MATRIX`, `MAT_REUSE_MATRIX`, or `MAT_INPLACE_MATRIX`
5378 
5379   Output Parameter:
5380 . B - the Hermitian transpose
5381 
5382   Level: intermediate
5383 
5384 .seealso: [](ch_matrices), `Mat`, `MatTranspose()`, `MatMultTranspose()`, `MatMultTransposeAdd()`, `MatIsTranspose()`, `MatReuse`
5385 @*/
5386 PetscErrorCode MatHermitianTranspose(Mat mat, MatReuse reuse, Mat *B)
5387 {
5388   PetscFunctionBegin;
5389   PetscCall(MatTranspose(mat, reuse, B));
5390 #if defined(PETSC_USE_COMPLEX)
5391   PetscCall(MatConjugate(*B));
5392 #endif
5393   PetscFunctionReturn(PETSC_SUCCESS);
5394 }
5395 
5396 /*@
5397   MatIsHermitianTranspose - Test whether a matrix is another one's Hermitian transpose,
5398 
5399   Collective
5400 
5401   Input Parameters:
5402 + A   - the matrix to test
5403 . B   - the matrix to test against, this can equal the first parameter
5404 - tol - tolerance, differences between entries smaller than this are counted as zero
5405 
5406   Output Parameter:
5407 . flg - the result
5408 
5409   Level: intermediate
5410 
5411   Notes:
5412   Only available for `MATAIJ` matrices.
5413 
5414   The sequential algorithm
5415   has a running time of the order of the number of nonzeros; the parallel
5416   test involves parallel copies of the block off-diagonal parts of the matrix.
5417 
5418 .seealso: [](ch_matrices), `Mat`, `MatTranspose()`, `MatIsSymmetric()`, `MatIsHermitian()`, `MatIsTranspose()`
5419 @*/
5420 PetscErrorCode MatIsHermitianTranspose(Mat A, Mat B, PetscReal tol, PetscBool *flg)
5421 {
5422   PetscErrorCode (*f)(Mat, Mat, PetscReal, PetscBool *), (*g)(Mat, Mat, PetscReal, PetscBool *);
5423 
5424   PetscFunctionBegin;
5425   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
5426   PetscValidHeaderSpecific(B, MAT_CLASSID, 2);
5427   PetscAssertPointer(flg, 4);
5428   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatIsHermitianTranspose_C", &f));
5429   PetscCall(PetscObjectQueryFunction((PetscObject)B, "MatIsHermitianTranspose_C", &g));
5430   if (f && g) {
5431     PetscCheck(f != g, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_NOTSAMETYPE, "Matrices do not have the same comparator for Hermitian test");
5432     PetscCall((*f)(A, B, tol, flg));
5433   }
5434   PetscFunctionReturn(PETSC_SUCCESS);
5435 }
5436 
5437 /*@
5438   MatPermute - Creates a new matrix with rows and columns permuted from the
5439   original.
5440 
5441   Collective
5442 
5443   Input Parameters:
5444 + mat - the matrix to permute
5445 . row - row permutation, each processor supplies only the permutation for its rows
5446 - col - column permutation, each processor supplies only the permutation for its columns
5447 
5448   Output Parameter:
5449 . B - the permuted matrix
5450 
5451   Level: advanced
5452 
5453   Note:
5454   The index sets map from row/col of permuted matrix to row/col of original matrix.
5455   The index sets should be on the same communicator as mat and have the same local sizes.
5456 
5457   Developer Note:
5458   If you want to implement `MatPermute()` for a matrix type, and your approach doesn't
5459   exploit the fact that row and col are permutations, consider implementing the
5460   more general `MatCreateSubMatrix()` instead.
5461 
5462 .seealso: [](ch_matrices), `Mat`, `MatGetOrdering()`, `ISAllGather()`, `MatCreateSubMatrix()`
5463 @*/
5464 PetscErrorCode MatPermute(Mat mat, IS row, IS col, Mat *B)
5465 {
5466   PetscFunctionBegin;
5467   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
5468   PetscValidType(mat, 1);
5469   PetscValidHeaderSpecific(row, IS_CLASSID, 2);
5470   PetscValidHeaderSpecific(col, IS_CLASSID, 3);
5471   PetscAssertPointer(B, 4);
5472   PetscCheckSameComm(mat, 1, row, 2);
5473   if (row != col) PetscCheckSameComm(row, 2, col, 3);
5474   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
5475   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
5476   PetscCheck(mat->ops->permute || mat->ops->createsubmatrix, PETSC_COMM_SELF, PETSC_ERR_SUP, "MatPermute not available for Mat type %s", ((PetscObject)mat)->type_name);
5477   MatCheckPreallocated(mat, 1);
5478 
5479   if (mat->ops->permute) {
5480     PetscUseTypeMethod(mat, permute, row, col, B);
5481     PetscCall(PetscObjectStateIncrease((PetscObject)*B));
5482   } else {
5483     PetscCall(MatCreateSubMatrix(mat, row, col, MAT_INITIAL_MATRIX, B));
5484   }
5485   PetscFunctionReturn(PETSC_SUCCESS);
5486 }
5487 
5488 /*@
5489   MatEqual - Compares two matrices.
5490 
5491   Collective
5492 
5493   Input Parameters:
5494 + A - the first matrix
5495 - B - the second matrix
5496 
5497   Output Parameter:
5498 . flg - `PETSC_TRUE` if the matrices are equal; `PETSC_FALSE` otherwise.
5499 
5500   Level: intermediate
5501 
5502 .seealso: [](ch_matrices), `Mat`
5503 @*/
5504 PetscErrorCode MatEqual(Mat A, Mat B, PetscBool *flg)
5505 {
5506   PetscFunctionBegin;
5507   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
5508   PetscValidHeaderSpecific(B, MAT_CLASSID, 2);
5509   PetscValidType(A, 1);
5510   PetscValidType(B, 2);
5511   PetscAssertPointer(flg, 3);
5512   PetscCheckSameComm(A, 1, B, 2);
5513   MatCheckPreallocated(A, 1);
5514   MatCheckPreallocated(B, 2);
5515   PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
5516   PetscCheck(B->assembled, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
5517   PetscCheck(A->rmap->N == B->rmap->N && A->cmap->N == B->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_SIZ, "Mat A,Mat B: global dim %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, A->rmap->N, B->rmap->N, A->cmap->N,
5518              B->cmap->N);
5519   if (A->ops->equal && A->ops->equal == B->ops->equal) {
5520     PetscUseTypeMethod(A, equal, B, flg);
5521   } else {
5522     PetscCall(MatMultEqual(A, B, 10, flg));
5523   }
5524   PetscFunctionReturn(PETSC_SUCCESS);
5525 }
5526 
5527 /*@
5528   MatDiagonalScale - Scales a matrix on the left and right by diagonal
5529   matrices that are stored as vectors.  Either of the two scaling
5530   matrices can be `NULL`.
5531 
5532   Collective
5533 
5534   Input Parameters:
5535 + mat - the matrix to be scaled
5536 . l   - the left scaling vector (or `NULL`)
5537 - r   - the right scaling vector (or `NULL`)
5538 
5539   Level: intermediate
5540 
5541   Note:
5542   `MatDiagonalScale()` computes $A = LAR$, where
5543   L = a diagonal matrix (stored as a vector), R = a diagonal matrix (stored as a vector)
5544   The L scales the rows of the matrix, the R scales the columns of the matrix.
5545 
5546 .seealso: [](ch_matrices), `Mat`, `MatScale()`, `MatShift()`, `MatDiagonalSet()`
5547 @*/
5548 PetscErrorCode MatDiagonalScale(Mat mat, Vec l, Vec r)
5549 {
5550   PetscFunctionBegin;
5551   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
5552   PetscValidType(mat, 1);
5553   if (l) {
5554     PetscValidHeaderSpecific(l, VEC_CLASSID, 2);
5555     PetscCheckSameComm(mat, 1, l, 2);
5556   }
5557   if (r) {
5558     PetscValidHeaderSpecific(r, VEC_CLASSID, 3);
5559     PetscCheckSameComm(mat, 1, r, 3);
5560   }
5561   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
5562   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
5563   MatCheckPreallocated(mat, 1);
5564   if (!l && !r) PetscFunctionReturn(PETSC_SUCCESS);
5565 
5566   PetscCall(PetscLogEventBegin(MAT_Scale, mat, 0, 0, 0));
5567   PetscUseTypeMethod(mat, diagonalscale, l, r);
5568   PetscCall(PetscLogEventEnd(MAT_Scale, mat, 0, 0, 0));
5569   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
5570   if (l != r) mat->symmetric = PETSC_BOOL3_FALSE;
5571   PetscFunctionReturn(PETSC_SUCCESS);
5572 }
5573 
5574 /*@
5575   MatScale - Scales all elements of a matrix by a given number.
5576 
5577   Logically Collective
5578 
5579   Input Parameters:
5580 + mat - the matrix to be scaled
5581 - a   - the scaling value
5582 
5583   Level: intermediate
5584 
5585 .seealso: [](ch_matrices), `Mat`, `MatDiagonalScale()`
5586 @*/
5587 PetscErrorCode MatScale(Mat mat, PetscScalar a)
5588 {
5589   PetscFunctionBegin;
5590   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
5591   PetscValidType(mat, 1);
5592   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
5593   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
5594   PetscValidLogicalCollectiveScalar(mat, a, 2);
5595   MatCheckPreallocated(mat, 1);
5596 
5597   PetscCall(PetscLogEventBegin(MAT_Scale, mat, 0, 0, 0));
5598   if (a != (PetscScalar)1.0) {
5599     PetscUseTypeMethod(mat, scale, a);
5600     PetscCall(PetscObjectStateIncrease((PetscObject)mat));
5601   }
5602   PetscCall(PetscLogEventEnd(MAT_Scale, mat, 0, 0, 0));
5603   PetscFunctionReturn(PETSC_SUCCESS);
5604 }
5605 
5606 /*@
5607   MatNorm - Calculates various norms of a matrix.
5608 
5609   Collective
5610 
5611   Input Parameters:
5612 + mat  - the matrix
5613 - type - the type of norm, `NORM_1`, `NORM_FROBENIUS`, `NORM_INFINITY`
5614 
5615   Output Parameter:
5616 . nrm - the resulting norm
5617 
5618   Level: intermediate
5619 
5620 .seealso: [](ch_matrices), `Mat`
5621 @*/
5622 PetscErrorCode MatNorm(Mat mat, NormType type, PetscReal *nrm)
5623 {
5624   PetscFunctionBegin;
5625   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
5626   PetscValidType(mat, 1);
5627   PetscAssertPointer(nrm, 3);
5628 
5629   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
5630   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
5631   MatCheckPreallocated(mat, 1);
5632 
5633   PetscUseTypeMethod(mat, norm, type, nrm);
5634   PetscFunctionReturn(PETSC_SUCCESS);
5635 }
5636 
5637 /*
5638      This variable is used to prevent counting of MatAssemblyBegin() that
5639    are called from within a MatAssemblyEnd().
5640 */
5641 static PetscInt MatAssemblyEnd_InUse = 0;
5642 /*@
5643   MatAssemblyBegin - Begins assembling the matrix.  This routine should
5644   be called after completing all calls to `MatSetValues()`.
5645 
5646   Collective
5647 
5648   Input Parameters:
5649 + mat  - the matrix
5650 - type - type of assembly, either `MAT_FLUSH_ASSEMBLY` or `MAT_FINAL_ASSEMBLY`
5651 
5652   Level: beginner
5653 
5654   Notes:
5655   `MatSetValues()` generally caches the values that belong to other MPI processes.  The matrix is ready to
5656   use only after `MatAssemblyBegin()` and `MatAssemblyEnd()` have been called.
5657 
5658   Use `MAT_FLUSH_ASSEMBLY` when switching between `ADD_VALUES` and `INSERT_VALUES`
5659   in `MatSetValues()`; use `MAT_FINAL_ASSEMBLY` for the final assembly before
5660   using the matrix.
5661 
5662   ALL processes that share a matrix MUST call `MatAssemblyBegin()` and `MatAssemblyEnd()` the SAME NUMBER of times, and each time with the
5663   same flag of `MAT_FLUSH_ASSEMBLY` or `MAT_FINAL_ASSEMBLY` for all processes. Thus you CANNOT locally change from `ADD_VALUES` to `INSERT_VALUES`, that is
5664   a global collective operation requiring all processes that share the matrix.
5665 
5666   Space for preallocated nonzeros that is not filled by a call to `MatSetValues()` or a related routine are compressed
5667   out by assembly. If you intend to use that extra space on a subsequent assembly, be sure to insert explicit zeros
5668   before `MAT_FINAL_ASSEMBLY` so the space is not compressed out.
5669 
5670 .seealso: [](ch_matrices), `Mat`, `MatAssemblyEnd()`, `MatSetValues()`, `MatAssembled()`
5671 @*/
5672 PetscErrorCode MatAssemblyBegin(Mat mat, MatAssemblyType type)
5673 {
5674   PetscFunctionBegin;
5675   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
5676   PetscValidType(mat, 1);
5677   MatCheckPreallocated(mat, 1);
5678   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix.\nDid you forget to call MatSetUnfactored()?");
5679   if (mat->assembled) {
5680     mat->was_assembled = PETSC_TRUE;
5681     mat->assembled     = PETSC_FALSE;
5682   }
5683 
5684   if (!MatAssemblyEnd_InUse) {
5685     PetscCall(PetscLogEventBegin(MAT_AssemblyBegin, mat, 0, 0, 0));
5686     PetscTryTypeMethod(mat, assemblybegin, type);
5687     PetscCall(PetscLogEventEnd(MAT_AssemblyBegin, mat, 0, 0, 0));
5688   } else PetscTryTypeMethod(mat, assemblybegin, type);
5689   PetscFunctionReturn(PETSC_SUCCESS);
5690 }
5691 
5692 /*@
5693   MatAssembled - Indicates if a matrix has been assembled and is ready for
5694   use; for example, in matrix-vector product.
5695 
5696   Not Collective
5697 
5698   Input Parameter:
5699 . mat - the matrix
5700 
5701   Output Parameter:
5702 . assembled - `PETSC_TRUE` or `PETSC_FALSE`
5703 
5704   Level: advanced
5705 
5706 .seealso: [](ch_matrices), `Mat`, `MatAssemblyEnd()`, `MatSetValues()`, `MatAssemblyBegin()`
5707 @*/
5708 PetscErrorCode MatAssembled(Mat mat, PetscBool *assembled)
5709 {
5710   PetscFunctionBegin;
5711   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
5712   PetscAssertPointer(assembled, 2);
5713   *assembled = mat->assembled;
5714   PetscFunctionReturn(PETSC_SUCCESS);
5715 }
5716 
5717 /*@
5718   MatAssemblyEnd - Completes assembling the matrix.  This routine should
5719   be called after `MatAssemblyBegin()`.
5720 
5721   Collective
5722 
5723   Input Parameters:
5724 + mat  - the matrix
5725 - type - type of assembly, either `MAT_FLUSH_ASSEMBLY` or `MAT_FINAL_ASSEMBLY`
5726 
5727   Options Database Keys:
5728 + -mat_view ::ascii_info             - Prints info on matrix at conclusion of `MatAssemblyEnd()`
5729 . -mat_view ::ascii_info_detail      - Prints more detailed info
5730 . -mat_view                          - Prints matrix in ASCII format
5731 . -mat_view ::ascii_matlab           - Prints matrix in MATLAB format
5732 . -mat_view draw                     - draws nonzero structure of matrix, using `MatView()` and `PetscDrawOpenX()`.
5733 . -display <name>                    - Sets display name (default is host)
5734 . -draw_pause <sec>                  - Sets number of seconds to pause after display
5735 . -mat_view socket                   - Sends matrix to socket, can be accessed from MATLAB (See [Using MATLAB with PETSc](ch_matlab))
5736 . -viewer_socket_machine <machine>   - Machine to use for socket
5737 . -viewer_socket_port <port>         - Port number to use for socket
5738 - -mat_view binary:filename[:append] - Save matrix to file in binary format
5739 
5740   Level: beginner
5741 
5742 .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatSetValues()`, `PetscDrawOpenX()`, `PetscDrawCreate()`, `MatView()`, `MatAssembled()`, `PetscViewerSocketOpen()`
5743 @*/
5744 PetscErrorCode MatAssemblyEnd(Mat mat, MatAssemblyType type)
5745 {
5746   static PetscInt inassm = 0;
5747   PetscBool       flg    = PETSC_FALSE;
5748 
5749   PetscFunctionBegin;
5750   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
5751   PetscValidType(mat, 1);
5752 
5753   inassm++;
5754   MatAssemblyEnd_InUse++;
5755   if (MatAssemblyEnd_InUse == 1) { /* Do the logging only the first time through */
5756     PetscCall(PetscLogEventBegin(MAT_AssemblyEnd, mat, 0, 0, 0));
5757     PetscTryTypeMethod(mat, assemblyend, type);
5758     PetscCall(PetscLogEventEnd(MAT_AssemblyEnd, mat, 0, 0, 0));
5759   } else PetscTryTypeMethod(mat, assemblyend, type);
5760 
5761   /* Flush assembly is not a true assembly */
5762   if (type != MAT_FLUSH_ASSEMBLY) {
5763     if (mat->num_ass) {
5764       if (!mat->symmetry_eternal) {
5765         mat->symmetric = PETSC_BOOL3_UNKNOWN;
5766         mat->hermitian = PETSC_BOOL3_UNKNOWN;
5767       }
5768       if (!mat->structural_symmetry_eternal && mat->ass_nonzerostate != mat->nonzerostate) mat->structurally_symmetric = PETSC_BOOL3_UNKNOWN;
5769       if (!mat->spd_eternal) mat->spd = PETSC_BOOL3_UNKNOWN;
5770     }
5771     mat->num_ass++;
5772     mat->assembled        = PETSC_TRUE;
5773     mat->ass_nonzerostate = mat->nonzerostate;
5774   }
5775 
5776   mat->insertmode = NOT_SET_VALUES;
5777   MatAssemblyEnd_InUse--;
5778   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
5779   if (inassm == 1 && type != MAT_FLUSH_ASSEMBLY) {
5780     PetscCall(MatViewFromOptions(mat, NULL, "-mat_view"));
5781 
5782     if (mat->checksymmetryonassembly) {
5783       PetscCall(MatIsSymmetric(mat, mat->checksymmetrytol, &flg));
5784       if (flg) {
5785         PetscCall(PetscPrintf(PetscObjectComm((PetscObject)mat), "Matrix is symmetric (tolerance %g)\n", (double)mat->checksymmetrytol));
5786       } else {
5787         PetscCall(PetscPrintf(PetscObjectComm((PetscObject)mat), "Matrix is not symmetric (tolerance %g)\n", (double)mat->checksymmetrytol));
5788       }
5789     }
5790     if (mat->nullsp && mat->checknullspaceonassembly) PetscCall(MatNullSpaceTest(mat->nullsp, mat, NULL));
5791   }
5792   inassm--;
5793   PetscFunctionReturn(PETSC_SUCCESS);
5794 }
5795 
5796 // PetscClangLinter pragma disable: -fdoc-section-header-unknown
5797 /*@
5798   MatSetOption - Sets a parameter option for a matrix. Some options
5799   may be specific to certain storage formats.  Some options
5800   determine how values will be inserted (or added). Sorted,
5801   row-oriented input will generally assemble the fastest. The default
5802   is row-oriented.
5803 
5804   Logically Collective for certain operations, such as `MAT_SPD`, not collective for `MAT_ROW_ORIENTED`, see `MatOption`
5805 
5806   Input Parameters:
5807 + mat - the matrix
5808 . op  - the option, one of those listed below (and possibly others),
5809 - flg - turn the option on (`PETSC_TRUE`) or off (`PETSC_FALSE`)
5810 
5811   Options Describing Matrix Structure:
5812 + `MAT_SPD`                         - symmetric positive definite
5813 . `MAT_SYMMETRIC`                   - symmetric in terms of both structure and value
5814 . `MAT_HERMITIAN`                   - transpose is the complex conjugation
5815 . `MAT_STRUCTURALLY_SYMMETRIC`      - symmetric nonzero structure
5816 . `MAT_SYMMETRY_ETERNAL`            - indicates the symmetry (or Hermitian structure) or its absence will persist through any changes to the matrix
5817 . `MAT_STRUCTURAL_SYMMETRY_ETERNAL` - indicates the structural symmetry or its absence will persist through any changes to the matrix
5818 . `MAT_SPD_ETERNAL`                 - indicates the value of `MAT_SPD` (true or false) will persist through any changes to the matrix
5819 
5820    These are not really options of the matrix, they are knowledge about the structure of the matrix that users may provide so that they
5821    do not need to be computed (usually at a high cost)
5822 
5823    Options For Use with `MatSetValues()`:
5824    Insert a logically dense subblock, which can be
5825 . `MAT_ROW_ORIENTED`                - row-oriented (default)
5826 
5827    These options reflect the data you pass in with `MatSetValues()`; it has
5828    nothing to do with how the data is stored internally in the matrix
5829    data structure.
5830 
5831    When (re)assembling a matrix, we can restrict the input for
5832    efficiency/debugging purposes.  These options include
5833 . `MAT_NEW_NONZERO_LOCATIONS`       - additional insertions will be allowed if they generate a new nonzero (slow)
5834 . `MAT_FORCE_DIAGONAL_ENTRIES`      - forces diagonal entries to be allocated
5835 . `MAT_IGNORE_OFF_PROC_ENTRIES`     - drops off-processor entries
5836 . `MAT_NEW_NONZERO_LOCATION_ERR`    - generates an error for new matrix entry
5837 . `MAT_USE_HASH_TABLE`              - uses a hash table to speed up matrix assembly
5838 . `MAT_NO_OFF_PROC_ENTRIES`         - you know each process will only set values for its own rows, will generate an error if
5839         any process sets values for another process. This avoids all reductions in the MatAssembly routines and thus improves
5840         performance for very large process counts.
5841 - `MAT_SUBSET_OFF_PROC_ENTRIES`     - you know that the first assembly after setting this flag will set a superset
5842         of the off-process entries required for all subsequent assemblies. This avoids a rendezvous step in the MatAssembly
5843         functions, instead sending only neighbor messages.
5844 
5845   Level: intermediate
5846 
5847   Notes:
5848   Except for `MAT_UNUSED_NONZERO_LOCATION_ERR` and  `MAT_ROW_ORIENTED` all processes that share the matrix must pass the same value in flg!
5849 
5850   Some options are relevant only for particular matrix types and
5851   are thus ignored by others.  Other options are not supported by
5852   certain matrix types and will generate an error message if set.
5853 
5854   If using Fortran to compute a matrix, one may need to
5855   use the column-oriented option (or convert to the row-oriented
5856   format).
5857 
5858   `MAT_NEW_NONZERO_LOCATIONS` set to `PETSC_FALSE` indicates that any add or insertion
5859   that would generate a new entry in the nonzero structure is instead
5860   ignored.  Thus, if memory has not already been allocated for this particular
5861   data, then the insertion is ignored. For dense matrices, in which
5862   the entire array is allocated, no entries are ever ignored.
5863   Set after the first `MatAssemblyEnd()`. If this option is set then the `MatAssemblyBegin()`/`MatAssemblyEnd()` processes has one less global reduction
5864 
5865   `MAT_NEW_NONZERO_LOCATION_ERR` set to PETSC_TRUE indicates that any add or insertion
5866   that would generate a new entry in the nonzero structure instead produces
5867   an error. (Currently supported for `MATAIJ` and `MATBAIJ` formats only.) If this option is set then the `MatAssemblyBegin()`/`MatAssemblyEnd()` processes has one less global reduction
5868 
5869   `MAT_NEW_NONZERO_ALLOCATION_ERR` set to `PETSC_TRUE` indicates that any add or insertion
5870   that would generate a new entry that has not been preallocated will
5871   instead produce an error. (Currently supported for `MATAIJ` and `MATBAIJ` formats
5872   only.) This is a useful flag when debugging matrix memory preallocation.
5873   If this option is set then the `MatAssemblyBegin()`/`MatAssemblyEnd()` processes has one less global reduction
5874 
5875   `MAT_IGNORE_OFF_PROC_ENTRIES` set to `PETSC_TRUE` indicates entries destined for
5876   other processors should be dropped, rather than stashed.
5877   This is useful if you know that the "owning" processor is also
5878   always generating the correct matrix entries, so that PETSc need
5879   not transfer duplicate entries generated on another processor.
5880 
5881   `MAT_USE_HASH_TABLE` indicates that a hash table be used to improve the
5882   searches during matrix assembly. When this flag is set, the hash table
5883   is created during the first matrix assembly. This hash table is
5884   used the next time through, during `MatSetValues()`/`MatSetValuesBlocked()`
5885   to improve the searching of indices. `MAT_NEW_NONZERO_LOCATIONS` flag
5886   should be used with `MAT_USE_HASH_TABLE` flag. This option is currently
5887   supported by `MATMPIBAIJ` format only.
5888 
5889   `MAT_KEEP_NONZERO_PATTERN` indicates when `MatZeroRows()` is called the zeroed entries
5890   are kept in the nonzero structure
5891 
5892   `MAT_IGNORE_ZERO_ENTRIES` - for `MATAIJ` and `MATIS` matrices this will stop zero values from creating
5893   a zero location in the matrix
5894 
5895   `MAT_USE_INODES` - indicates using inode version of the code - works with `MATAIJ` matrix types
5896 
5897   `MAT_NO_OFF_PROC_ZERO_ROWS` - you know each process will only zero its own rows. This avoids all reductions in the
5898   zero row routines and thus improves performance for very large process counts.
5899 
5900   `MAT_IGNORE_LOWER_TRIANGULAR` - For `MATSBAIJ` matrices will ignore any insertions you make in the lower triangular
5901   part of the matrix (since they should match the upper triangular part).
5902 
5903   `MAT_SORTED_FULL` - each process provides exactly its local rows; all column indices for a given row are passed in a
5904   single call to `MatSetValues()`, preallocation is perfect, row oriented, `INSERT_VALUES` is used. Common
5905   with finite difference schemes with non-periodic boundary conditions.
5906 
5907   Developer Note:
5908   `MAT_SYMMETRY_ETERNAL`, `MAT_STRUCTURAL_SYMMETRY_ETERNAL`, and `MAT_SPD_ETERNAL` are used by `MatAssemblyEnd()` and in other
5909   places where otherwise the value of `MAT_SYMMETRIC`, `MAT_STRUCTURALLY_SYMMETRIC` or `MAT_SPD` would need to be changed back
5910   to `PETSC_BOOL3_UNKNOWN` because the matrix values had changed so the code cannot be certain that the related property had
5911   not changed.
5912 
5913 .seealso: [](ch_matrices), `MatOption`, `Mat`, `MatGetOption()`
5914 @*/
5915 PetscErrorCode MatSetOption(Mat mat, MatOption op, PetscBool flg)
5916 {
5917   PetscFunctionBegin;
5918   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
5919   if (op > 0) {
5920     PetscValidLogicalCollectiveEnum(mat, op, 2);
5921     PetscValidLogicalCollectiveBool(mat, flg, 3);
5922   }
5923 
5924   PetscCheck(((int)op) > MAT_OPTION_MIN && ((int)op) < MAT_OPTION_MAX, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_OUTOFRANGE, "Options %d is out of range", (int)op);
5925 
5926   switch (op) {
5927   case MAT_FORCE_DIAGONAL_ENTRIES:
5928     mat->force_diagonals = flg;
5929     PetscFunctionReturn(PETSC_SUCCESS);
5930   case MAT_NO_OFF_PROC_ENTRIES:
5931     mat->nooffprocentries = flg;
5932     PetscFunctionReturn(PETSC_SUCCESS);
5933   case MAT_SUBSET_OFF_PROC_ENTRIES:
5934     mat->assembly_subset = flg;
5935     if (!mat->assembly_subset) { /* See the same logic in VecAssembly wrt VEC_SUBSET_OFF_PROC_ENTRIES */
5936 #if !defined(PETSC_HAVE_MPIUNI)
5937       PetscCall(MatStashScatterDestroy_BTS(&mat->stash));
5938 #endif
5939       mat->stash.first_assembly_done = PETSC_FALSE;
5940     }
5941     PetscFunctionReturn(PETSC_SUCCESS);
5942   case MAT_NO_OFF_PROC_ZERO_ROWS:
5943     mat->nooffproczerorows = flg;
5944     PetscFunctionReturn(PETSC_SUCCESS);
5945   case MAT_SPD:
5946     if (flg) {
5947       mat->spd                    = PETSC_BOOL3_TRUE;
5948       mat->symmetric              = PETSC_BOOL3_TRUE;
5949       mat->structurally_symmetric = PETSC_BOOL3_TRUE;
5950     } else {
5951       mat->spd = PETSC_BOOL3_FALSE;
5952     }
5953     break;
5954   case MAT_SYMMETRIC:
5955     mat->symmetric = flg ? PETSC_BOOL3_TRUE : PETSC_BOOL3_FALSE;
5956     if (flg) mat->structurally_symmetric = PETSC_BOOL3_TRUE;
5957 #if !defined(PETSC_USE_COMPLEX)
5958     mat->hermitian = flg ? PETSC_BOOL3_TRUE : PETSC_BOOL3_FALSE;
5959 #endif
5960     break;
5961   case MAT_HERMITIAN:
5962     mat->hermitian = flg ? PETSC_BOOL3_TRUE : PETSC_BOOL3_FALSE;
5963     if (flg) mat->structurally_symmetric = PETSC_BOOL3_TRUE;
5964 #if !defined(PETSC_USE_COMPLEX)
5965     mat->symmetric = flg ? PETSC_BOOL3_TRUE : PETSC_BOOL3_FALSE;
5966 #endif
5967     break;
5968   case MAT_STRUCTURALLY_SYMMETRIC:
5969     mat->structurally_symmetric = flg ? PETSC_BOOL3_TRUE : PETSC_BOOL3_FALSE;
5970     break;
5971   case MAT_SYMMETRY_ETERNAL:
5972     PetscCheck(mat->symmetric != PETSC_BOOL3_UNKNOWN, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Cannot set MAT_SYMMETRY_ETERNAL without first setting MAT_SYMMETRIC to true or false");
5973     mat->symmetry_eternal = flg;
5974     if (flg) mat->structural_symmetry_eternal = PETSC_TRUE;
5975     break;
5976   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
5977     PetscCheck(mat->structurally_symmetric != PETSC_BOOL3_UNKNOWN, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Cannot set MAT_STRUCTURAL_SYMMETRY_ETERNAL without first setting MAT_STRUCTURALLY_SYMMETRIC to true or false");
5978     mat->structural_symmetry_eternal = flg;
5979     break;
5980   case MAT_SPD_ETERNAL:
5981     PetscCheck(mat->spd != PETSC_BOOL3_UNKNOWN, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Cannot set MAT_SPD_ETERNAL without first setting MAT_SPD to true or false");
5982     mat->spd_eternal = flg;
5983     if (flg) {
5984       mat->structural_symmetry_eternal = PETSC_TRUE;
5985       mat->symmetry_eternal            = PETSC_TRUE;
5986     }
5987     break;
5988   case MAT_STRUCTURE_ONLY:
5989     mat->structure_only = flg;
5990     break;
5991   case MAT_SORTED_FULL:
5992     mat->sortedfull = flg;
5993     break;
5994   default:
5995     break;
5996   }
5997   PetscTryTypeMethod(mat, setoption, op, flg);
5998   PetscFunctionReturn(PETSC_SUCCESS);
5999 }
6000 
6001 /*@
6002   MatGetOption - Gets a parameter option that has been set for a matrix.
6003 
6004   Logically Collective
6005 
6006   Input Parameters:
6007 + mat - the matrix
6008 - op  - the option, this only responds to certain options, check the code for which ones
6009 
6010   Output Parameter:
6011 . flg - turn the option on (`PETSC_TRUE`) or off (`PETSC_FALSE`)
6012 
6013   Level: intermediate
6014 
6015   Notes:
6016   Can only be called after `MatSetSizes()` and `MatSetType()` have been set.
6017 
6018   Certain option values may be unknown, for those use the routines `MatIsSymmetric()`, `MatIsHermitian()`, `MatIsStructurallySymmetric()`, or
6019   `MatIsSymmetricKnown()`, `MatIsHermitianKnown()`, `MatIsStructurallySymmetricKnown()`
6020 
6021 .seealso: [](ch_matrices), `Mat`, `MatOption`, `MatSetOption()`, `MatIsSymmetric()`, `MatIsHermitian()`, `MatIsStructurallySymmetric()`,
6022     `MatIsSymmetricKnown()`, `MatIsHermitianKnown()`, `MatIsStructurallySymmetricKnown()`
6023 @*/
6024 PetscErrorCode MatGetOption(Mat mat, MatOption op, PetscBool *flg)
6025 {
6026   PetscFunctionBegin;
6027   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
6028   PetscValidType(mat, 1);
6029 
6030   PetscCheck(((int)op) > MAT_OPTION_MIN && ((int)op) < MAT_OPTION_MAX, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_OUTOFRANGE, "Options %d is out of range", (int)op);
6031   PetscCheck(((PetscObject)mat)->type_name, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_TYPENOTSET, "Cannot get options until type and size have been set, see MatSetType() and MatSetSizes()");
6032 
6033   switch (op) {
6034   case MAT_NO_OFF_PROC_ENTRIES:
6035     *flg = mat->nooffprocentries;
6036     break;
6037   case MAT_NO_OFF_PROC_ZERO_ROWS:
6038     *flg = mat->nooffproczerorows;
6039     break;
6040   case MAT_SYMMETRIC:
6041     SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "Use MatIsSymmetric() or MatIsSymmetricKnown()");
6042     break;
6043   case MAT_HERMITIAN:
6044     SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "Use MatIsHermitian() or MatIsHermitianKnown()");
6045     break;
6046   case MAT_STRUCTURALLY_SYMMETRIC:
6047     SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "Use MatIsStructurallySymmetric() or MatIsStructurallySymmetricKnown()");
6048     break;
6049   case MAT_SPD:
6050     SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "Use MatIsSPDKnown()");
6051     break;
6052   case MAT_SYMMETRY_ETERNAL:
6053     *flg = mat->symmetry_eternal;
6054     break;
6055   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
6056     *flg = mat->symmetry_eternal;
6057     break;
6058   default:
6059     break;
6060   }
6061   PetscFunctionReturn(PETSC_SUCCESS);
6062 }
6063 
6064 /*@
6065   MatZeroEntries - Zeros all entries of a matrix.  For sparse matrices
6066   this routine retains the old nonzero structure.
6067 
6068   Logically Collective
6069 
6070   Input Parameter:
6071 . mat - the matrix
6072 
6073   Level: intermediate
6074 
6075   Note:
6076   If the matrix was not preallocated then a default, likely poor preallocation will be set in the matrix, so this should be called after the preallocation phase.
6077   See the Performance chapter of the users manual for information on preallocating matrices.
6078 
6079 .seealso: [](ch_matrices), `Mat`, `MatZeroRows()`, `MatZeroRowsColumns()`
6080 @*/
6081 PetscErrorCode MatZeroEntries(Mat mat)
6082 {
6083   PetscFunctionBegin;
6084   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
6085   PetscValidType(mat, 1);
6086   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
6087   PetscCheck(mat->insertmode == NOT_SET_VALUES, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for matrices where you have set values but not yet assembled");
6088   MatCheckPreallocated(mat, 1);
6089 
6090   PetscCall(PetscLogEventBegin(MAT_ZeroEntries, mat, 0, 0, 0));
6091   PetscUseTypeMethod(mat, zeroentries);
6092   PetscCall(PetscLogEventEnd(MAT_ZeroEntries, mat, 0, 0, 0));
6093   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
6094   PetscFunctionReturn(PETSC_SUCCESS);
6095 }
6096 
6097 /*@
6098   MatZeroRowsColumns - Zeros all entries (except possibly the main diagonal)
6099   of a set of rows and columns of a matrix.
6100 
6101   Collective
6102 
6103   Input Parameters:
6104 + mat     - the matrix
6105 . numRows - the number of rows/columns to zero
6106 . rows    - the global row indices
6107 . diag    - value put in the diagonal of the eliminated rows
6108 . x       - optional vector of the solution for zeroed rows (other entries in vector are not used), these must be set before this call
6109 - b       - optional vector of the right hand side, that will be adjusted by provided solution entries
6110 
6111   Level: intermediate
6112 
6113   Notes:
6114   This routine, along with `MatZeroRows()`, is typically used to eliminate known Dirichlet boundary conditions from a linear system.
6115 
6116   For each zeroed row, the value of the corresponding `b` is set to diag times the value of the corresponding `x`.
6117   The other entries of `b` will be adjusted by the known values of `x` times the corresponding matrix entries in the columns that are being eliminated
6118 
6119   If the resulting linear system is to be solved with `KSP` then one can (but does not have to) call `KSPSetInitialGuessNonzero()` to allow the
6120   Krylov method to take advantage of the known solution on the zeroed rows.
6121 
6122   For the parallel case, all processes that share the matrix (i.e.,
6123   those in the communicator used for matrix creation) MUST call this
6124   routine, regardless of whether any rows being zeroed are owned by
6125   them.
6126 
6127   Unlike `MatZeroRows()` this does not change the nonzero structure of the matrix, it merely zeros those entries in the matrix.
6128 
6129   Each processor can indicate any rows in the entire matrix to be zeroed (i.e. each process does NOT have to
6130   list only rows local to itself).
6131 
6132   The option `MAT_NO_OFF_PROC_ZERO_ROWS` does not apply to this routine.
6133 
6134 .seealso: [](ch_matrices), `Mat`, `MatZeroRowsIS()`, `MatZeroRows()`, `MatZeroRowsLocalIS()`, `MatZeroRowsStencil()`, `MatZeroEntries()`, `MatZeroRowsLocal()`, `MatSetOption()`,
6135           `MatZeroRowsColumnsLocal()`, `MatZeroRowsColumnsLocalIS()`, `MatZeroRowsColumnsIS()`, `MatZeroRowsColumnsStencil()`
6136 @*/
6137 PetscErrorCode MatZeroRowsColumns(Mat mat, PetscInt numRows, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
6138 {
6139   PetscFunctionBegin;
6140   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
6141   PetscValidType(mat, 1);
6142   if (numRows) PetscAssertPointer(rows, 3);
6143   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
6144   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
6145   MatCheckPreallocated(mat, 1);
6146 
6147   PetscUseTypeMethod(mat, zerorowscolumns, numRows, rows, diag, x, b);
6148   PetscCall(MatViewFromOptions(mat, NULL, "-mat_view"));
6149   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
6150   PetscFunctionReturn(PETSC_SUCCESS);
6151 }
6152 
6153 /*@
6154   MatZeroRowsColumnsIS - Zeros all entries (except possibly the main diagonal)
6155   of a set of rows and columns of a matrix.
6156 
6157   Collective
6158 
6159   Input Parameters:
6160 + mat  - the matrix
6161 . is   - the rows to zero
6162 . diag - value put in all diagonals of eliminated rows (0.0 will even eliminate diagonal entry)
6163 . x    - optional vector of solutions for zeroed rows (other entries in vector are not used)
6164 - b    - optional vector of right hand side, that will be adjusted by provided solution
6165 
6166   Level: intermediate
6167 
6168   Note:
6169   See `MatZeroRowsColumns()` for details on how this routine operates.
6170 
6171 .seealso: [](ch_matrices), `Mat`, `MatZeroRowsIS()`, `MatZeroRowsColumns()`, `MatZeroRowsLocalIS()`, `MatZeroRowsStencil()`, `MatZeroEntries()`, `MatZeroRowsLocal()`, `MatSetOption()`,
6172           `MatZeroRowsColumnsLocal()`, `MatZeroRowsColumnsLocalIS()`, `MatZeroRows()`, `MatZeroRowsColumnsStencil()`
6173 @*/
6174 PetscErrorCode MatZeroRowsColumnsIS(Mat mat, IS is, PetscScalar diag, Vec x, Vec b)
6175 {
6176   PetscInt        numRows;
6177   const PetscInt *rows;
6178 
6179   PetscFunctionBegin;
6180   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
6181   PetscValidHeaderSpecific(is, IS_CLASSID, 2);
6182   PetscValidType(mat, 1);
6183   PetscValidType(is, 2);
6184   PetscCall(ISGetLocalSize(is, &numRows));
6185   PetscCall(ISGetIndices(is, &rows));
6186   PetscCall(MatZeroRowsColumns(mat, numRows, rows, diag, x, b));
6187   PetscCall(ISRestoreIndices(is, &rows));
6188   PetscFunctionReturn(PETSC_SUCCESS);
6189 }
6190 
6191 /*@
6192   MatZeroRows - Zeros all entries (except possibly the main diagonal)
6193   of a set of rows of a matrix.
6194 
6195   Collective
6196 
6197   Input Parameters:
6198 + mat     - the matrix
6199 . numRows - the number of rows to zero
6200 . rows    - the global row indices
6201 . diag    - value put in the diagonal of the zeroed rows
6202 . x       - optional vector of solutions for zeroed rows (other entries in vector are not used), these must be set before this call
6203 - b       - optional vector of right hand side, that will be adjusted by provided solution entries
6204 
6205   Level: intermediate
6206 
6207   Notes:
6208   This routine, along with `MatZeroRowsColumns()`, is typically used to eliminate known Dirichlet boundary conditions from a linear system.
6209 
6210   For each zeroed row, the value of the corresponding `b` is set to `diag` times the value of the corresponding `x`.
6211 
6212   If the resulting linear system is to be solved with `KSP` then one can (but does not have to) call `KSPSetInitialGuessNonzero()` to allow the
6213   Krylov method to take advantage of the known solution on the zeroed rows.
6214 
6215   May be followed by using a `PC` of type `PCREDISTRIBUTE` to solve the reduced problem (`PCDISTRIBUTE` completely eliminates the zeroed rows and their corresponding columns)
6216   from the matrix.
6217 
6218   Unlike `MatZeroRowsColumns()` for the `MATAIJ` and `MATBAIJ` matrix formats this removes the old nonzero structure, from the eliminated rows of the matrix
6219   but does not release memory.  Because of this removal matrix-vector products with the adjusted matrix will be a bit faster. For the dense and block diagonal
6220   formats this does not alter the nonzero structure.
6221 
6222   If the option `MatSetOption`(mat,`MAT_KEEP_NONZERO_PATTERN`,`PETSC_TRUE`) the nonzero structure
6223   of the matrix is not changed the values are
6224   merely zeroed.
6225 
6226   The user can set a value in the diagonal entry (or for the `MATAIJ` format
6227   formats can optionally remove the main diagonal entry from the
6228   nonzero structure as well, by passing 0.0 as the final argument).
6229 
6230   For the parallel case, all processes that share the matrix (i.e.,
6231   those in the communicator used for matrix creation) MUST call this
6232   routine, regardless of whether any rows being zeroed are owned by
6233   them.
6234 
6235   Each processor can indicate any rows in the entire matrix to be zeroed (i.e. each process does NOT have to
6236   list only rows local to itself).
6237 
6238   You can call `MatSetOption`(mat,`MAT_NO_OFF_PROC_ZERO_ROWS`,`PETSC_TRUE`) if each process indicates only rows it
6239   owns that are to be zeroed. This saves a global synchronization in the implementation.
6240 
6241 .seealso: [](ch_matrices), `Mat`, `MatZeroRowsIS()`, `MatZeroRowsColumns()`, `MatZeroRowsLocalIS()`, `MatZeroRowsStencil()`, `MatZeroEntries()`, `MatZeroRowsLocal()`, `MatSetOption()`,
6242           `MatZeroRowsColumnsLocal()`, `MatZeroRowsColumnsLocalIS()`, `MatZeroRowsColumnsIS()`, `MatZeroRowsColumnsStencil()`, `PCREDISTRIBUTE`
6243 @*/
6244 PetscErrorCode MatZeroRows(Mat mat, PetscInt numRows, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
6245 {
6246   PetscFunctionBegin;
6247   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
6248   PetscValidType(mat, 1);
6249   if (numRows) PetscAssertPointer(rows, 3);
6250   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
6251   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
6252   MatCheckPreallocated(mat, 1);
6253 
6254   PetscUseTypeMethod(mat, zerorows, numRows, rows, diag, x, b);
6255   PetscCall(MatViewFromOptions(mat, NULL, "-mat_view"));
6256   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
6257   PetscFunctionReturn(PETSC_SUCCESS);
6258 }
6259 
6260 /*@
6261   MatZeroRowsIS - Zeros all entries (except possibly the main diagonal)
6262   of a set of rows of a matrix.
6263 
6264   Collective
6265 
6266   Input Parameters:
6267 + mat  - the matrix
6268 . is   - index set of rows to remove (if `NULL` then no row is removed)
6269 . diag - value put in all diagonals of eliminated rows
6270 . x    - optional vector of solutions for zeroed rows (other entries in vector are not used)
6271 - b    - optional vector of right hand side, that will be adjusted by provided solution
6272 
6273   Level: intermediate
6274 
6275   Note:
6276   See `MatZeroRows()` for details on how this routine operates.
6277 
6278 .seealso: [](ch_matrices), `Mat`, `MatZeroRows()`, `MatZeroRowsColumns()`, `MatZeroRowsLocalIS()`, `MatZeroRowsStencil()`, `MatZeroEntries()`, `MatZeroRowsLocal()`, `MatSetOption()`,
6279           `MatZeroRowsColumnsLocal()`, `MatZeroRowsColumnsLocalIS()`, `MatZeroRowsColumnsIS()`, `MatZeroRowsColumnsStencil()`
6280 @*/
6281 PetscErrorCode MatZeroRowsIS(Mat mat, IS is, PetscScalar diag, Vec x, Vec b)
6282 {
6283   PetscInt        numRows = 0;
6284   const PetscInt *rows    = NULL;
6285 
6286   PetscFunctionBegin;
6287   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
6288   PetscValidType(mat, 1);
6289   if (is) {
6290     PetscValidHeaderSpecific(is, IS_CLASSID, 2);
6291     PetscCall(ISGetLocalSize(is, &numRows));
6292     PetscCall(ISGetIndices(is, &rows));
6293   }
6294   PetscCall(MatZeroRows(mat, numRows, rows, diag, x, b));
6295   if (is) PetscCall(ISRestoreIndices(is, &rows));
6296   PetscFunctionReturn(PETSC_SUCCESS);
6297 }
6298 
6299 /*@
6300   MatZeroRowsStencil - Zeros all entries (except possibly the main diagonal)
6301   of a set of rows of a matrix. These rows must be local to the process.
6302 
6303   Collective
6304 
6305   Input Parameters:
6306 + mat     - the matrix
6307 . numRows - the number of rows to remove
6308 . rows    - the grid coordinates (and component number when dof > 1) for matrix rows
6309 . diag    - value put in all diagonals of eliminated rows (0.0 will even eliminate diagonal entry)
6310 . x       - optional vector of solutions for zeroed rows (other entries in vector are not used)
6311 - b       - optional vector of right hand side, that will be adjusted by provided solution
6312 
6313   Level: intermediate
6314 
6315   Notes:
6316   See `MatZeroRows()` for details on how this routine operates.
6317 
6318   The grid coordinates are across the entire grid, not just the local portion
6319 
6320   For periodic boundary conditions use negative indices for values to the left (below 0; that are to be
6321   obtained by wrapping values from right edge). For values to the right of the last entry using that index plus one
6322   etc to obtain values that obtained by wrapping the values from the left edge. This does not work for anything but the
6323   `DM_BOUNDARY_PERIODIC` boundary type.
6324 
6325   For indices that don't mean anything for your case (like the k index when working in 2d) or the c index when you have
6326   a single value per point) you can skip filling those indices.
6327 
6328   Fortran Note:
6329   `idxm` and `idxn` should be declared as
6330 $     MatStencil idxm(4, m)
6331   and the values inserted using
6332 .vb
6333     idxm(MatStencil_i, 1) = i
6334     idxm(MatStencil_j, 1) = j
6335     idxm(MatStencil_k, 1) = k
6336     idxm(MatStencil_c, 1) = c
6337    etc
6338 .ve
6339 
6340 .seealso: [](ch_matrices), `Mat`, `MatZeroRowsIS()`, `MatZeroRowsColumns()`, `MatZeroRowsLocalIS()`, `MatZeroRowsl()`, `MatZeroEntries()`, `MatZeroRowsLocal()`, `MatSetOption()`,
6341           `MatZeroRowsColumnsLocal()`, `MatZeroRowsColumnsLocalIS()`, `MatZeroRowsColumnsIS()`, `MatZeroRowsColumnsStencil()`
6342 @*/
6343 PetscErrorCode MatZeroRowsStencil(Mat mat, PetscInt numRows, const MatStencil rows[], PetscScalar diag, Vec x, Vec b)
6344 {
6345   PetscInt  dim    = mat->stencil.dim;
6346   PetscInt  sdim   = dim - (1 - (PetscInt)mat->stencil.noc);
6347   PetscInt *dims   = mat->stencil.dims + 1;
6348   PetscInt *starts = mat->stencil.starts;
6349   PetscInt *dxm    = (PetscInt *)rows;
6350   PetscInt *jdxm, i, j, tmp, numNewRows = 0;
6351 
6352   PetscFunctionBegin;
6353   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
6354   PetscValidType(mat, 1);
6355   if (numRows) PetscAssertPointer(rows, 3);
6356 
6357   PetscCall(PetscMalloc1(numRows, &jdxm));
6358   for (i = 0; i < numRows; ++i) {
6359     /* Skip unused dimensions (they are ordered k, j, i, c) */
6360     for (j = 0; j < 3 - sdim; ++j) dxm++;
6361     /* Local index in X dir */
6362     tmp = *dxm++ - starts[0];
6363     /* Loop over remaining dimensions */
6364     for (j = 0; j < dim - 1; ++j) {
6365       /* If nonlocal, set index to be negative */
6366       if ((*dxm++ - starts[j + 1]) < 0 || tmp < 0) tmp = PETSC_MIN_INT;
6367       /* Update local index */
6368       else tmp = tmp * dims[j] + *(dxm - 1) - starts[j + 1];
6369     }
6370     /* Skip component slot if necessary */
6371     if (mat->stencil.noc) dxm++;
6372     /* Local row number */
6373     if (tmp >= 0) jdxm[numNewRows++] = tmp;
6374   }
6375   PetscCall(MatZeroRowsLocal(mat, numNewRows, jdxm, diag, x, b));
6376   PetscCall(PetscFree(jdxm));
6377   PetscFunctionReturn(PETSC_SUCCESS);
6378 }
6379 
6380 /*@
6381   MatZeroRowsColumnsStencil - Zeros all row and column entries (except possibly the main diagonal)
6382   of a set of rows and columns of a matrix.
6383 
6384   Collective
6385 
6386   Input Parameters:
6387 + mat     - the matrix
6388 . numRows - the number of rows/columns to remove
6389 . rows    - the grid coordinates (and component number when dof > 1) for matrix rows
6390 . diag    - value put in all diagonals of eliminated rows (0.0 will even eliminate diagonal entry)
6391 . x       - optional vector of solutions for zeroed rows (other entries in vector are not used)
6392 - b       - optional vector of right hand side, that will be adjusted by provided solution
6393 
6394   Level: intermediate
6395 
6396   Notes:
6397   See `MatZeroRowsColumns()` for details on how this routine operates.
6398 
6399   The grid coordinates are across the entire grid, not just the local portion
6400 
6401   For periodic boundary conditions use negative indices for values to the left (below 0; that are to be
6402   obtained by wrapping values from right edge). For values to the right of the last entry using that index plus one
6403   etc to obtain values that obtained by wrapping the values from the left edge. This does not work for anything but the
6404   `DM_BOUNDARY_PERIODIC` boundary type.
6405 
6406   For indices that don't mean anything for your case (like the k index when working in 2d) or the c index when you have
6407   a single value per point) you can skip filling those indices.
6408 
6409   Fortran Note:
6410   `idxm` and `idxn` should be declared as
6411 $     MatStencil idxm(4, m)
6412   and the values inserted using
6413 .vb
6414     idxm(MatStencil_i, 1) = i
6415     idxm(MatStencil_j, 1) = j
6416     idxm(MatStencil_k, 1) = k
6417     idxm(MatStencil_c, 1) = c
6418     etc
6419 .ve
6420 
6421 .seealso: [](ch_matrices), `Mat`, `MatZeroRowsIS()`, `MatZeroRowsColumns()`, `MatZeroRowsLocalIS()`, `MatZeroRowsStencil()`, `MatZeroEntries()`, `MatZeroRowsLocal()`, `MatSetOption()`,
6422           `MatZeroRowsColumnsLocal()`, `MatZeroRowsColumnsLocalIS()`, `MatZeroRowsColumnsIS()`, `MatZeroRows()`
6423 @*/
6424 PetscErrorCode MatZeroRowsColumnsStencil(Mat mat, PetscInt numRows, const MatStencil rows[], PetscScalar diag, Vec x, Vec b)
6425 {
6426   PetscInt  dim    = mat->stencil.dim;
6427   PetscInt  sdim   = dim - (1 - (PetscInt)mat->stencil.noc);
6428   PetscInt *dims   = mat->stencil.dims + 1;
6429   PetscInt *starts = mat->stencil.starts;
6430   PetscInt *dxm    = (PetscInt *)rows;
6431   PetscInt *jdxm, i, j, tmp, numNewRows = 0;
6432 
6433   PetscFunctionBegin;
6434   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
6435   PetscValidType(mat, 1);
6436   if (numRows) PetscAssertPointer(rows, 3);
6437 
6438   PetscCall(PetscMalloc1(numRows, &jdxm));
6439   for (i = 0; i < numRows; ++i) {
6440     /* Skip unused dimensions (they are ordered k, j, i, c) */
6441     for (j = 0; j < 3 - sdim; ++j) dxm++;
6442     /* Local index in X dir */
6443     tmp = *dxm++ - starts[0];
6444     /* Loop over remaining dimensions */
6445     for (j = 0; j < dim - 1; ++j) {
6446       /* If nonlocal, set index to be negative */
6447       if ((*dxm++ - starts[j + 1]) < 0 || tmp < 0) tmp = PETSC_MIN_INT;
6448       /* Update local index */
6449       else tmp = tmp * dims[j] + *(dxm - 1) - starts[j + 1];
6450     }
6451     /* Skip component slot if necessary */
6452     if (mat->stencil.noc) dxm++;
6453     /* Local row number */
6454     if (tmp >= 0) jdxm[numNewRows++] = tmp;
6455   }
6456   PetscCall(MatZeroRowsColumnsLocal(mat, numNewRows, jdxm, diag, x, b));
6457   PetscCall(PetscFree(jdxm));
6458   PetscFunctionReturn(PETSC_SUCCESS);
6459 }
6460 
6461 /*@C
6462   MatZeroRowsLocal - Zeros all entries (except possibly the main diagonal)
6463   of a set of rows of a matrix; using local numbering of rows.
6464 
6465   Collective
6466 
6467   Input Parameters:
6468 + mat     - the matrix
6469 . numRows - the number of rows to remove
6470 . rows    - the local row indices
6471 . diag    - value put in all diagonals of eliminated rows
6472 . x       - optional vector of solutions for zeroed rows (other entries in vector are not used)
6473 - b       - optional vector of right hand side, that will be adjusted by provided solution
6474 
6475   Level: intermediate
6476 
6477   Notes:
6478   Before calling `MatZeroRowsLocal()`, the user must first set the
6479   local-to-global mapping by calling MatSetLocalToGlobalMapping(), this is often already set for matrices obtained with `DMCreateMatrix()`.
6480 
6481   See `MatZeroRows()` for details on how this routine operates.
6482 
6483 .seealso: [](ch_matrices), `Mat`, `MatZeroRowsIS()`, `MatZeroRowsColumns()`, `MatZeroRowsLocalIS()`, `MatZeroRowsStencil()`, `MatZeroEntries()`, `MatZeroRows()`, `MatSetOption()`,
6484           `MatZeroRowsColumnsLocal()`, `MatZeroRowsColumnsLocalIS()`, `MatZeroRowsColumnsIS()`, `MatZeroRowsColumnsStencil()`
6485 @*/
6486 PetscErrorCode MatZeroRowsLocal(Mat mat, PetscInt numRows, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
6487 {
6488   PetscFunctionBegin;
6489   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
6490   PetscValidType(mat, 1);
6491   if (numRows) PetscAssertPointer(rows, 3);
6492   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
6493   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
6494   MatCheckPreallocated(mat, 1);
6495 
6496   if (mat->ops->zerorowslocal) {
6497     PetscUseTypeMethod(mat, zerorowslocal, numRows, rows, diag, x, b);
6498   } else {
6499     IS              is, newis;
6500     const PetscInt *newRows;
6501 
6502     PetscCheck(mat->rmap->mapping, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Need to provide local to global mapping to matrix first");
6503     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numRows, rows, PETSC_COPY_VALUES, &is));
6504     PetscCall(ISLocalToGlobalMappingApplyIS(mat->rmap->mapping, is, &newis));
6505     PetscCall(ISGetIndices(newis, &newRows));
6506     PetscUseTypeMethod(mat, zerorows, numRows, newRows, diag, x, b);
6507     PetscCall(ISRestoreIndices(newis, &newRows));
6508     PetscCall(ISDestroy(&newis));
6509     PetscCall(ISDestroy(&is));
6510   }
6511   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
6512   PetscFunctionReturn(PETSC_SUCCESS);
6513 }
6514 
6515 /*@
6516   MatZeroRowsLocalIS - Zeros all entries (except possibly the main diagonal)
6517   of a set of rows of a matrix; using local numbering of rows.
6518 
6519   Collective
6520 
6521   Input Parameters:
6522 + mat  - the matrix
6523 . is   - index set of rows to remove
6524 . diag - value put in all diagonals of eliminated rows
6525 . x    - optional vector of solutions for zeroed rows (other entries in vector are not used)
6526 - b    - optional vector of right hand side, that will be adjusted by provided solution
6527 
6528   Level: intermediate
6529 
6530   Notes:
6531   Before calling `MatZeroRowsLocalIS()`, the user must first set the
6532   local-to-global mapping by calling `MatSetLocalToGlobalMapping()`, this is often already set for matrices obtained with `DMCreateMatrix()`.
6533 
6534   See `MatZeroRows()` for details on how this routine operates.
6535 
6536 .seealso: [](ch_matrices), `Mat`, `MatZeroRowsIS()`, `MatZeroRowsColumns()`, `MatZeroRows()`, `MatZeroRowsStencil()`, `MatZeroEntries()`, `MatZeroRowsLocal()`, `MatSetOption()`,
6537           `MatZeroRowsColumnsLocal()`, `MatZeroRowsColumnsLocalIS()`, `MatZeroRowsColumnsIS()`, `MatZeroRowsColumnsStencil()`
6538 @*/
6539 PetscErrorCode MatZeroRowsLocalIS(Mat mat, IS is, PetscScalar diag, Vec x, Vec b)
6540 {
6541   PetscInt        numRows;
6542   const PetscInt *rows;
6543 
6544   PetscFunctionBegin;
6545   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
6546   PetscValidType(mat, 1);
6547   PetscValidHeaderSpecific(is, IS_CLASSID, 2);
6548   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
6549   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
6550   MatCheckPreallocated(mat, 1);
6551 
6552   PetscCall(ISGetLocalSize(is, &numRows));
6553   PetscCall(ISGetIndices(is, &rows));
6554   PetscCall(MatZeroRowsLocal(mat, numRows, rows, diag, x, b));
6555   PetscCall(ISRestoreIndices(is, &rows));
6556   PetscFunctionReturn(PETSC_SUCCESS);
6557 }
6558 
6559 /*@
6560   MatZeroRowsColumnsLocal - Zeros all entries (except possibly the main diagonal)
6561   of a set of rows and columns of a matrix; using local numbering of rows.
6562 
6563   Collective
6564 
6565   Input Parameters:
6566 + mat     - the matrix
6567 . numRows - the number of rows to remove
6568 . rows    - the global row indices
6569 . diag    - value put in all diagonals of eliminated rows
6570 . x       - optional vector of solutions for zeroed rows (other entries in vector are not used)
6571 - b       - optional vector of right hand side, that will be adjusted by provided solution
6572 
6573   Level: intermediate
6574 
6575   Notes:
6576   Before calling `MatZeroRowsColumnsLocal()`, the user must first set the
6577   local-to-global mapping by calling `MatSetLocalToGlobalMapping()`, this is often already set for matrices obtained with `DMCreateMatrix()`.
6578 
6579   See `MatZeroRowsColumns()` for details on how this routine operates.
6580 
6581 .seealso: [](ch_matrices), `Mat`, `MatZeroRowsIS()`, `MatZeroRowsColumns()`, `MatZeroRowsLocalIS()`, `MatZeroRowsStencil()`, `MatZeroEntries()`, `MatZeroRowsLocal()`, `MatSetOption()`,
6582           `MatZeroRows()`, `MatZeroRowsColumnsLocalIS()`, `MatZeroRowsColumnsIS()`, `MatZeroRowsColumnsStencil()`
6583 @*/
6584 PetscErrorCode MatZeroRowsColumnsLocal(Mat mat, PetscInt numRows, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
6585 {
6586   IS              is, newis;
6587   const PetscInt *newRows;
6588 
6589   PetscFunctionBegin;
6590   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
6591   PetscValidType(mat, 1);
6592   if (numRows) PetscAssertPointer(rows, 3);
6593   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
6594   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
6595   MatCheckPreallocated(mat, 1);
6596 
6597   PetscCheck(mat->cmap->mapping, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Need to provide local to global mapping to matrix first");
6598   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numRows, rows, PETSC_COPY_VALUES, &is));
6599   PetscCall(ISLocalToGlobalMappingApplyIS(mat->cmap->mapping, is, &newis));
6600   PetscCall(ISGetIndices(newis, &newRows));
6601   PetscUseTypeMethod(mat, zerorowscolumns, numRows, newRows, diag, x, b);
6602   PetscCall(ISRestoreIndices(newis, &newRows));
6603   PetscCall(ISDestroy(&newis));
6604   PetscCall(ISDestroy(&is));
6605   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
6606   PetscFunctionReturn(PETSC_SUCCESS);
6607 }
6608 
6609 /*@
6610   MatZeroRowsColumnsLocalIS - Zeros all entries (except possibly the main diagonal)
6611   of a set of rows and columns of a matrix; using local numbering of rows.
6612 
6613   Collective
6614 
6615   Input Parameters:
6616 + mat  - the matrix
6617 . is   - index set of rows to remove
6618 . diag - value put in all diagonals of eliminated rows
6619 . x    - optional vector of solutions for zeroed rows (other entries in vector are not used)
6620 - b    - optional vector of right hand side, that will be adjusted by provided solution
6621 
6622   Level: intermediate
6623 
6624   Notes:
6625   Before calling `MatZeroRowsColumnsLocalIS()`, the user must first set the
6626   local-to-global mapping by calling `MatSetLocalToGlobalMapping()`, this is often already set for matrices obtained with `DMCreateMatrix()`.
6627 
6628   See `MatZeroRowsColumns()` for details on how this routine operates.
6629 
6630 .seealso: [](ch_matrices), `Mat`, `MatZeroRowsIS()`, `MatZeroRowsColumns()`, `MatZeroRowsLocalIS()`, `MatZeroRowsStencil()`, `MatZeroEntries()`, `MatZeroRowsLocal()`, `MatSetOption()`,
6631           `MatZeroRowsColumnsLocal()`, `MatZeroRows()`, `MatZeroRowsColumnsIS()`, `MatZeroRowsColumnsStencil()`
6632 @*/
6633 PetscErrorCode MatZeroRowsColumnsLocalIS(Mat mat, IS is, PetscScalar diag, Vec x, Vec b)
6634 {
6635   PetscInt        numRows;
6636   const PetscInt *rows;
6637 
6638   PetscFunctionBegin;
6639   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
6640   PetscValidType(mat, 1);
6641   PetscValidHeaderSpecific(is, IS_CLASSID, 2);
6642   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
6643   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
6644   MatCheckPreallocated(mat, 1);
6645 
6646   PetscCall(ISGetLocalSize(is, &numRows));
6647   PetscCall(ISGetIndices(is, &rows));
6648   PetscCall(MatZeroRowsColumnsLocal(mat, numRows, rows, diag, x, b));
6649   PetscCall(ISRestoreIndices(is, &rows));
6650   PetscFunctionReturn(PETSC_SUCCESS);
6651 }
6652 
6653 /*@C
6654   MatGetSize - Returns the numbers of rows and columns in a matrix.
6655 
6656   Not Collective
6657 
6658   Input Parameter:
6659 . mat - the matrix
6660 
6661   Output Parameters:
6662 + m - the number of global rows
6663 - n - the number of global columns
6664 
6665   Level: beginner
6666 
6667   Note:
6668   Both output parameters can be `NULL` on input.
6669 
6670 .seealso: [](ch_matrices), `Mat`, `MatSetSizes()`, `MatGetLocalSize()`
6671 @*/
6672 PetscErrorCode MatGetSize(Mat mat, PetscInt *m, PetscInt *n)
6673 {
6674   PetscFunctionBegin;
6675   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
6676   if (m) *m = mat->rmap->N;
6677   if (n) *n = mat->cmap->N;
6678   PetscFunctionReturn(PETSC_SUCCESS);
6679 }
6680 
6681 /*@C
6682   MatGetLocalSize - For most matrix formats, excluding `MATELEMENTAL` and `MATSCALAPACK`, Returns the number of local rows and local columns
6683   of a matrix. For all matrices this is the local size of the left and right vectors as returned by `MatCreateVecs()`.
6684 
6685   Not Collective
6686 
6687   Input Parameter:
6688 . mat - the matrix
6689 
6690   Output Parameters:
6691 + m - the number of local rows, use `NULL` to not obtain this value
6692 - n - the number of local columns, use `NULL` to not obtain this value
6693 
6694   Level: beginner
6695 
6696 .seealso: [](ch_matrices), `Mat`, `MatSetSizes()`, `MatGetSize()`
6697 @*/
6698 PetscErrorCode MatGetLocalSize(Mat mat, PetscInt *m, PetscInt *n)
6699 {
6700   PetscFunctionBegin;
6701   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
6702   if (m) PetscAssertPointer(m, 2);
6703   if (n) PetscAssertPointer(n, 3);
6704   if (m) *m = mat->rmap->n;
6705   if (n) *n = mat->cmap->n;
6706   PetscFunctionReturn(PETSC_SUCCESS);
6707 }
6708 
6709 /*@C
6710   MatGetOwnershipRangeColumn - Returns the range of matrix columns associated with rows of a
6711   vector one multiplies this matrix by that are owned by this processor.
6712 
6713   Not Collective, unless matrix has not been allocated, then collective
6714 
6715   Input Parameter:
6716 . mat - the matrix
6717 
6718   Output Parameters:
6719 + m - the global index of the first local column, use `NULL` to not obtain this value
6720 - n - one more than the global index of the last local column, use `NULL` to not obtain this value
6721 
6722   Level: developer
6723 
6724   Note:
6725   Returns the columns of the "diagonal block" for most sparse matrix formats. See [Matrix
6726   Layouts](sec_matlayout) for details on matrix layouts.
6727 
6728 .seealso: [](ch_matrices), `Mat`, `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangesColumn()`, `PetscLayout`
6729 @*/
6730 PetscErrorCode MatGetOwnershipRangeColumn(Mat mat, PetscInt *m, PetscInt *n)
6731 {
6732   PetscFunctionBegin;
6733   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
6734   PetscValidType(mat, 1);
6735   if (m) PetscAssertPointer(m, 2);
6736   if (n) PetscAssertPointer(n, 3);
6737   MatCheckPreallocated(mat, 1);
6738   if (m) *m = mat->cmap->rstart;
6739   if (n) *n = mat->cmap->rend;
6740   PetscFunctionReturn(PETSC_SUCCESS);
6741 }
6742 
6743 /*@C
6744   MatGetOwnershipRange - For matrices that own values by row, excludes `MATELEMENTAL` and `MATSCALAPACK`, returns the range of matrix rows owned by
6745   this MPI process.
6746 
6747   Not Collective
6748 
6749   Input Parameter:
6750 . mat - the matrix
6751 
6752   Output Parameters:
6753 + m - the global index of the first local row, use `NULL` to not obtain this value
6754 - n - one more than the global index of the last local row, use `NULL` to not obtain this value
6755 
6756   Level: beginner
6757 
6758   Note:
6759   For all matrices  it returns the range of matrix rows associated with rows of a vector that
6760   would contain the result of a matrix vector product with this matrix. See [Matrix
6761   Layouts](sec_matlayout) for details on matrix layouts.
6762 
6763 .seealso: [](ch_matrices), `Mat`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, `MatGetOwnershipRangesColumn()`, `PetscSplitOwnership()`, `PetscSplitOwnershipBlock()`,
6764           `PetscLayout`
6765 @*/
6766 PetscErrorCode MatGetOwnershipRange(Mat mat, PetscInt *m, PetscInt *n)
6767 {
6768   PetscFunctionBegin;
6769   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
6770   PetscValidType(mat, 1);
6771   if (m) PetscAssertPointer(m, 2);
6772   if (n) PetscAssertPointer(n, 3);
6773   MatCheckPreallocated(mat, 1);
6774   if (m) *m = mat->rmap->rstart;
6775   if (n) *n = mat->rmap->rend;
6776   PetscFunctionReturn(PETSC_SUCCESS);
6777 }
6778 
6779 /*@C
6780   MatGetOwnershipRanges - For matrices that own values by row, excludes `MATELEMENTAL` and
6781   `MATSCALAPACK`, returns the range of matrix rows owned by each process.
6782 
6783   Not Collective, unless matrix has not been allocated
6784 
6785   Input Parameter:
6786 . mat - the matrix
6787 
6788   Output Parameter:
6789 . ranges - start of each processors portion plus one more than the total length at the end
6790 
6791   Level: beginner
6792 
6793   Note:
6794   For all matrices  it returns the ranges of matrix rows associated with rows of a vector that
6795   would contain the result of a matrix vector product with this matrix. See [Matrix
6796   Layouts](sec_matlayout) for details on matrix layouts.
6797 
6798 .seealso: [](ch_matrices), `Mat`, `MatGetOwnershipRange()`, `MatGetOwnershipRangeColumn()`, `MatGetOwnershipRangesColumn()`, `PetscLayout`
6799 @*/
6800 PetscErrorCode MatGetOwnershipRanges(Mat mat, const PetscInt **ranges)
6801 {
6802   PetscFunctionBegin;
6803   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
6804   PetscValidType(mat, 1);
6805   MatCheckPreallocated(mat, 1);
6806   PetscCall(PetscLayoutGetRanges(mat->rmap, ranges));
6807   PetscFunctionReturn(PETSC_SUCCESS);
6808 }
6809 
6810 /*@C
6811   MatGetOwnershipRangesColumn - Returns the ranges of matrix columns associated with rows of a
6812   vector one multiplies this vector by that are owned by each processor.
6813 
6814   Not Collective, unless matrix has not been allocated
6815 
6816   Input Parameter:
6817 . mat - the matrix
6818 
6819   Output Parameter:
6820 . ranges - start of each processors portion plus one more than the total length at the end
6821 
6822   Level: beginner
6823 
6824   Note:
6825   Returns the columns of the "diagonal blocks", for most sparse matrix formats. See [Matrix
6826   Layouts](sec_matlayout) for details on matrix layouts.
6827 
6828 .seealso: [](ch_matrices), `Mat`, `MatGetOwnershipRange()`, `MatGetOwnershipRangeColumn()`, `MatGetOwnershipRanges()`
6829 @*/
6830 PetscErrorCode MatGetOwnershipRangesColumn(Mat mat, const PetscInt **ranges)
6831 {
6832   PetscFunctionBegin;
6833   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
6834   PetscValidType(mat, 1);
6835   MatCheckPreallocated(mat, 1);
6836   PetscCall(PetscLayoutGetRanges(mat->cmap, ranges));
6837   PetscFunctionReturn(PETSC_SUCCESS);
6838 }
6839 
6840 /*@C
6841   MatGetOwnershipIS - Get row and column ownership of a matrices' values as index sets.
6842 
6843   Not Collective
6844 
6845   Input Parameter:
6846 . A - matrix
6847 
6848   Output Parameters:
6849 + rows - rows in which this process owns elements, , use `NULL` to not obtain this value
6850 - cols - columns in which this process owns elements, use `NULL` to not obtain this value
6851 
6852   Level: intermediate
6853 
6854   Note:
6855   For most matrices, excluding `MATELEMENTAL` and `MATSCALAPACK`, this corresponds to values
6856   returned by `MatGetOwnershipRange()`, `MatGetOwnershipRangeColumn()`. For `MATELEMENTAL` and
6857   `MATSCALAPACK` the ownership is more complicated. See [Matrix Layouts](sec_matlayout) for
6858   details on matrix layouts.
6859 
6860 .seealso: [](ch_matrices), `Mat`, `MatGetOwnershipRange()`, `MatGetOwnershipRangeColumn()`, `MatSetValues()`, ``MATELEMENTAL``, ``MATSCALAPACK``
6861 @*/
6862 PetscErrorCode MatGetOwnershipIS(Mat A, IS *rows, IS *cols)
6863 {
6864   PetscErrorCode (*f)(Mat, IS *, IS *);
6865 
6866   PetscFunctionBegin;
6867   MatCheckPreallocated(A, 1);
6868   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatGetOwnershipIS_C", &f));
6869   if (f) {
6870     PetscCall((*f)(A, rows, cols));
6871   } else { /* Create a standard row-based partition, each process is responsible for ALL columns in their row block */
6872     if (rows) PetscCall(ISCreateStride(PETSC_COMM_SELF, A->rmap->n, A->rmap->rstart, 1, rows));
6873     if (cols) PetscCall(ISCreateStride(PETSC_COMM_SELF, A->cmap->N, 0, 1, cols));
6874   }
6875   PetscFunctionReturn(PETSC_SUCCESS);
6876 }
6877 
6878 /*@C
6879   MatILUFactorSymbolic - Performs symbolic ILU factorization of a matrix obtained with `MatGetFactor()`
6880   Uses levels of fill only, not drop tolerance. Use `MatLUFactorNumeric()`
6881   to complete the factorization.
6882 
6883   Collective
6884 
6885   Input Parameters:
6886 + fact - the factorized matrix obtained with `MatGetFactor()`
6887 . mat  - the matrix
6888 . row  - row permutation
6889 . col  - column permutation
6890 - info - structure containing
6891 .vb
6892       levels - number of levels of fill.
6893       expected fill - as ratio of original fill.
6894       1 or 0 - indicating force fill on diagonal (improves robustness for matrices
6895                 missing diagonal entries)
6896 .ve
6897 
6898   Level: developer
6899 
6900   Notes:
6901   See [Matrix Factorization](sec_matfactor) for additional information.
6902 
6903   Most users should employ the `KSP` interface for linear solvers
6904   instead of working directly with matrix algebra routines such as this.
6905   See, e.g., `KSPCreate()`.
6906 
6907   Uses the definition of level of fill as in Y. Saad, 2003
6908 
6909   Developer Note:
6910   The Fortran interface is not autogenerated as the
6911   interface definition cannot be generated correctly [due to `MatFactorInfo`]
6912 
6913   References:
6914 .  * - Y. Saad, Iterative methods for sparse linear systems Philadelphia: Society for Industrial and Applied Mathematics, 2003
6915 
6916 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatLUFactorNumeric()`, `MatCholeskyFactor()`
6917           `MatGetOrdering()`, `MatFactorInfo`
6918 @*/
6919 PetscErrorCode MatILUFactorSymbolic(Mat fact, Mat mat, IS row, IS col, const MatFactorInfo *info)
6920 {
6921   PetscFunctionBegin;
6922   PetscValidHeaderSpecific(mat, MAT_CLASSID, 2);
6923   PetscValidType(mat, 2);
6924   if (row) PetscValidHeaderSpecific(row, IS_CLASSID, 3);
6925   if (col) PetscValidHeaderSpecific(col, IS_CLASSID, 4);
6926   PetscAssertPointer(info, 5);
6927   PetscAssertPointer(fact, 1);
6928   PetscCheck(info->levels >= 0, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_OUTOFRANGE, "Levels of fill negative %" PetscInt_FMT, (PetscInt)info->levels);
6929   PetscCheck(info->fill >= 1.0, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_OUTOFRANGE, "Expected fill less than 1.0 %g", (double)info->fill);
6930   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
6931   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
6932   MatCheckPreallocated(mat, 2);
6933 
6934   if (!fact->trivialsymbolic) PetscCall(PetscLogEventBegin(MAT_ILUFactorSymbolic, mat, row, col, 0));
6935   PetscUseTypeMethod(fact, ilufactorsymbolic, mat, row, col, info);
6936   if (!fact->trivialsymbolic) PetscCall(PetscLogEventEnd(MAT_ILUFactorSymbolic, mat, row, col, 0));
6937   PetscFunctionReturn(PETSC_SUCCESS);
6938 }
6939 
6940 /*@C
6941   MatICCFactorSymbolic - Performs symbolic incomplete
6942   Cholesky factorization for a symmetric matrix.  Use
6943   `MatCholeskyFactorNumeric()` to complete the factorization.
6944 
6945   Collective
6946 
6947   Input Parameters:
6948 + fact - the factorized matrix obtained with `MatGetFactor()`
6949 . mat  - the matrix to be factored
6950 . perm - row and column permutation
6951 - info - structure containing
6952 .vb
6953       levels - number of levels of fill.
6954       expected fill - as ratio of original fill.
6955 .ve
6956 
6957   Level: developer
6958 
6959   Notes:
6960   Most users should employ the `KSP` interface for linear solvers
6961   instead of working directly with matrix algebra routines such as this.
6962   See, e.g., `KSPCreate()`.
6963 
6964   This uses the definition of level of fill as in Y. Saad, 2003
6965 
6966   Developer Note:
6967   The Fortran interface is not autogenerated as the
6968   interface definition cannot be generated correctly [due to `MatFactorInfo`]
6969 
6970   References:
6971 .  * - Y. Saad, Iterative methods for sparse linear systems Philadelphia: Society for Industrial and Applied Mathematics, 2003
6972 
6973 .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatCholeskyFactorNumeric()`, `MatCholeskyFactor()`, `MatFactorInfo`
6974 @*/
6975 PetscErrorCode MatICCFactorSymbolic(Mat fact, Mat mat, IS perm, const MatFactorInfo *info)
6976 {
6977   PetscFunctionBegin;
6978   PetscValidHeaderSpecific(mat, MAT_CLASSID, 2);
6979   PetscValidType(mat, 2);
6980   if (perm) PetscValidHeaderSpecific(perm, IS_CLASSID, 3);
6981   PetscAssertPointer(info, 4);
6982   PetscAssertPointer(fact, 1);
6983   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
6984   PetscCheck(info->levels >= 0, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_OUTOFRANGE, "Levels negative %" PetscInt_FMT, (PetscInt)info->levels);
6985   PetscCheck(info->fill >= 1.0, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_OUTOFRANGE, "Expected fill less than 1.0 %g", (double)info->fill);
6986   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
6987   MatCheckPreallocated(mat, 2);
6988 
6989   if (!fact->trivialsymbolic) PetscCall(PetscLogEventBegin(MAT_ICCFactorSymbolic, mat, perm, 0, 0));
6990   PetscUseTypeMethod(fact, iccfactorsymbolic, mat, perm, info);
6991   if (!fact->trivialsymbolic) PetscCall(PetscLogEventEnd(MAT_ICCFactorSymbolic, mat, perm, 0, 0));
6992   PetscFunctionReturn(PETSC_SUCCESS);
6993 }
6994 
6995 /*@C
6996   MatCreateSubMatrices - Extracts several submatrices from a matrix. If submat
6997   points to an array of valid matrices, they may be reused to store the new
6998   submatrices.
6999 
7000   Collective
7001 
7002   Input Parameters:
7003 + mat   - the matrix
7004 . n     - the number of submatrixes to be extracted (on this processor, may be zero)
7005 . irow  - index set of rows to extract
7006 . icol  - index set of columns to extract
7007 - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
7008 
7009   Output Parameter:
7010 . submat - the array of submatrices
7011 
7012   Level: advanced
7013 
7014   Notes:
7015   `MatCreateSubMatrices()` can extract ONLY sequential submatrices
7016   (from both sequential and parallel matrices). Use `MatCreateSubMatrix()`
7017   to extract a parallel submatrix.
7018 
7019   Some matrix types place restrictions on the row and column
7020   indices, such as that they be sorted or that they be equal to each other.
7021 
7022   The index sets may not have duplicate entries.
7023 
7024   When extracting submatrices from a parallel matrix, each processor can
7025   form a different submatrix by setting the rows and columns of its
7026   individual index sets according to the local submatrix desired.
7027 
7028   When finished using the submatrices, the user should destroy
7029   them with `MatDestroySubMatrices()`.
7030 
7031   `MAT_REUSE_MATRIX` can only be used when the nonzero structure of the
7032   original matrix has not changed from that last call to `MatCreateSubMatrices()`.
7033 
7034   This routine creates the matrices in submat; you should NOT create them before
7035   calling it. It also allocates the array of matrix pointers submat.
7036 
7037   For `MATBAIJ` matrices the index sets must respect the block structure, that is if they
7038   request one row/column in a block, they must request all rows/columns that are in
7039   that block. For example, if the block size is 2 you cannot request just row 0 and
7040   column 0.
7041 
7042   Fortran Note:
7043   The Fortran interface is slightly different from that given below; it
7044   requires one to pass in as `submat` a `Mat` (integer) array of size at least n+1.
7045 
7046 .seealso: [](ch_matrices), `Mat`, `MatDestroySubMatrices()`, `MatCreateSubMatrix()`, `MatGetRow()`, `MatGetDiagonal()`, `MatReuse`
7047 @*/
7048 PetscErrorCode MatCreateSubMatrices(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
7049 {
7050   PetscInt  i;
7051   PetscBool eq;
7052 
7053   PetscFunctionBegin;
7054   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
7055   PetscValidType(mat, 1);
7056   if (n) {
7057     PetscAssertPointer(irow, 3);
7058     for (i = 0; i < n; i++) PetscValidHeaderSpecific(irow[i], IS_CLASSID, 3);
7059     PetscAssertPointer(icol, 4);
7060     for (i = 0; i < n; i++) PetscValidHeaderSpecific(icol[i], IS_CLASSID, 4);
7061   }
7062   PetscAssertPointer(submat, 6);
7063   if (n && scall == MAT_REUSE_MATRIX) {
7064     PetscAssertPointer(*submat, 6);
7065     for (i = 0; i < n; i++) PetscValidHeaderSpecific((*submat)[i], MAT_CLASSID, 6);
7066   }
7067   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
7068   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
7069   MatCheckPreallocated(mat, 1);
7070   PetscCall(PetscLogEventBegin(MAT_CreateSubMats, mat, 0, 0, 0));
7071   PetscUseTypeMethod(mat, createsubmatrices, n, irow, icol, scall, submat);
7072   PetscCall(PetscLogEventEnd(MAT_CreateSubMats, mat, 0, 0, 0));
7073   for (i = 0; i < n; i++) {
7074     (*submat)[i]->factortype = MAT_FACTOR_NONE; /* in case in place factorization was previously done on submatrix */
7075     PetscCall(ISEqualUnsorted(irow[i], icol[i], &eq));
7076     if (eq) PetscCall(MatPropagateSymmetryOptions(mat, (*submat)[i]));
7077 #if defined(PETSC_HAVE_VIENNACL) || defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP)
7078     if (mat->boundtocpu && mat->bindingpropagates) {
7079       PetscCall(MatBindToCPU((*submat)[i], PETSC_TRUE));
7080       PetscCall(MatSetBindingPropagates((*submat)[i], PETSC_TRUE));
7081     }
7082 #endif
7083   }
7084   PetscFunctionReturn(PETSC_SUCCESS);
7085 }
7086 
7087 /*@C
7088   MatCreateSubMatricesMPI - Extracts MPI submatrices across a sub communicator of mat (by pairs of `IS` that may live on subcomms).
7089 
7090   Collective
7091 
7092   Input Parameters:
7093 + mat   - the matrix
7094 . n     - the number of submatrixes to be extracted
7095 . irow  - index set of rows to extract
7096 . icol  - index set of columns to extract
7097 - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
7098 
7099   Output Parameter:
7100 . submat - the array of submatrices
7101 
7102   Level: advanced
7103 
7104   Note:
7105   This is used by `PCGASM`
7106 
7107 .seealso: [](ch_matrices), `Mat`, `PCGASM`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatGetRow()`, `MatGetDiagonal()`, `MatReuse`
7108 @*/
7109 PetscErrorCode MatCreateSubMatricesMPI(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[])
7110 {
7111   PetscInt  i;
7112   PetscBool eq;
7113 
7114   PetscFunctionBegin;
7115   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
7116   PetscValidType(mat, 1);
7117   if (n) {
7118     PetscAssertPointer(irow, 3);
7119     PetscValidHeaderSpecific(*irow, IS_CLASSID, 3);
7120     PetscAssertPointer(icol, 4);
7121     PetscValidHeaderSpecific(*icol, IS_CLASSID, 4);
7122   }
7123   PetscAssertPointer(submat, 6);
7124   if (n && scall == MAT_REUSE_MATRIX) {
7125     PetscAssertPointer(*submat, 6);
7126     PetscValidHeaderSpecific(**submat, MAT_CLASSID, 6);
7127   }
7128   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
7129   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
7130   MatCheckPreallocated(mat, 1);
7131 
7132   PetscCall(PetscLogEventBegin(MAT_CreateSubMats, mat, 0, 0, 0));
7133   PetscUseTypeMethod(mat, createsubmatricesmpi, n, irow, icol, scall, submat);
7134   PetscCall(PetscLogEventEnd(MAT_CreateSubMats, mat, 0, 0, 0));
7135   for (i = 0; i < n; i++) {
7136     PetscCall(ISEqualUnsorted(irow[i], icol[i], &eq));
7137     if (eq) PetscCall(MatPropagateSymmetryOptions(mat, (*submat)[i]));
7138   }
7139   PetscFunctionReturn(PETSC_SUCCESS);
7140 }
7141 
7142 /*@C
7143   MatDestroyMatrices - Destroys an array of matrices.
7144 
7145   Collective
7146 
7147   Input Parameters:
7148 + n   - the number of local matrices
7149 - mat - the matrices (this is a pointer to the array of matrices)
7150 
7151   Level: advanced
7152 
7153   Note:
7154   Frees not only the matrices, but also the array that contains the matrices
7155 
7156   Fortran Note:
7157   This does not free the array.
7158 
7159 .seealso: [](ch_matrices), `Mat`, `MatCreateSubMatrices()` `MatDestroySubMatrices()`
7160 @*/
7161 PetscErrorCode MatDestroyMatrices(PetscInt n, Mat *mat[])
7162 {
7163   PetscInt i;
7164 
7165   PetscFunctionBegin;
7166   if (!*mat) PetscFunctionReturn(PETSC_SUCCESS);
7167   PetscCheck(n >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to destroy negative number of matrices %" PetscInt_FMT, n);
7168   PetscAssertPointer(mat, 2);
7169 
7170   for (i = 0; i < n; i++) PetscCall(MatDestroy(&(*mat)[i]));
7171 
7172   /* memory is allocated even if n = 0 */
7173   PetscCall(PetscFree(*mat));
7174   PetscFunctionReturn(PETSC_SUCCESS);
7175 }
7176 
7177 /*@C
7178   MatDestroySubMatrices - Destroys a set of matrices obtained with `MatCreateSubMatrices()`.
7179 
7180   Collective
7181 
7182   Input Parameters:
7183 + n   - the number of local matrices
7184 - mat - the matrices (this is a pointer to the array of matrices, just to match the calling
7185                        sequence of `MatCreateSubMatrices()`)
7186 
7187   Level: advanced
7188 
7189   Note:
7190   Frees not only the matrices, but also the array that contains the matrices
7191 
7192   Fortran Note:
7193   This does not free the array.
7194 
7195 .seealso: [](ch_matrices), `Mat`, `MatCreateSubMatrices()`, `MatDestroyMatrices()`
7196 @*/
7197 PetscErrorCode MatDestroySubMatrices(PetscInt n, Mat *mat[])
7198 {
7199   Mat mat0;
7200 
7201   PetscFunctionBegin;
7202   if (!*mat) PetscFunctionReturn(PETSC_SUCCESS);
7203   /* mat[] is an array of length n+1, see MatCreateSubMatrices_xxx() */
7204   PetscCheck(n >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to destroy negative number of matrices %" PetscInt_FMT, n);
7205   PetscAssertPointer(mat, 2);
7206 
7207   mat0 = (*mat)[0];
7208   if (mat0 && mat0->ops->destroysubmatrices) {
7209     PetscCall((*mat0->ops->destroysubmatrices)(n, mat));
7210   } else {
7211     PetscCall(MatDestroyMatrices(n, mat));
7212   }
7213   PetscFunctionReturn(PETSC_SUCCESS);
7214 }
7215 
7216 /*@C
7217   MatGetSeqNonzeroStructure - Extracts the nonzero structure from a matrix and stores it, in its entirety, on each process
7218 
7219   Collective
7220 
7221   Input Parameter:
7222 . mat - the matrix
7223 
7224   Output Parameter:
7225 . matstruct - the sequential matrix with the nonzero structure of mat
7226 
7227   Level: developer
7228 
7229 .seealso: [](ch_matrices), `Mat`, `MatDestroySeqNonzeroStructure()`, `MatCreateSubMatrices()`, `MatDestroyMatrices()`
7230 @*/
7231 PetscErrorCode MatGetSeqNonzeroStructure(Mat mat, Mat *matstruct)
7232 {
7233   PetscFunctionBegin;
7234   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
7235   PetscAssertPointer(matstruct, 2);
7236 
7237   PetscValidType(mat, 1);
7238   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
7239   MatCheckPreallocated(mat, 1);
7240 
7241   PetscCall(PetscLogEventBegin(MAT_GetSeqNonzeroStructure, mat, 0, 0, 0));
7242   PetscUseTypeMethod(mat, getseqnonzerostructure, matstruct);
7243   PetscCall(PetscLogEventEnd(MAT_GetSeqNonzeroStructure, mat, 0, 0, 0));
7244   PetscFunctionReturn(PETSC_SUCCESS);
7245 }
7246 
7247 /*@C
7248   MatDestroySeqNonzeroStructure - Destroys matrix obtained with `MatGetSeqNonzeroStructure()`.
7249 
7250   Collective
7251 
7252   Input Parameter:
7253 . mat - the matrix (this is a pointer to the array of matrices, just to match the calling
7254                        sequence of `MatGetSeqNonzeroStructure()`)
7255 
7256   Level: advanced
7257 
7258   Note:
7259   Frees not only the matrices, but also the array that contains the matrices
7260 
7261 .seealso: [](ch_matrices), `Mat`, `MatGetSeqNonzeroStructure()`
7262 @*/
7263 PetscErrorCode MatDestroySeqNonzeroStructure(Mat *mat)
7264 {
7265   PetscFunctionBegin;
7266   PetscAssertPointer(mat, 1);
7267   PetscCall(MatDestroy(mat));
7268   PetscFunctionReturn(PETSC_SUCCESS);
7269 }
7270 
7271 /*@
7272   MatIncreaseOverlap - Given a set of submatrices indicated by index sets,
7273   replaces the index sets by larger ones that represent submatrices with
7274   additional overlap.
7275 
7276   Collective
7277 
7278   Input Parameters:
7279 + mat - the matrix
7280 . n   - the number of index sets
7281 . is  - the array of index sets (these index sets will changed during the call)
7282 - ov  - the additional overlap requested
7283 
7284   Options Database Key:
7285 . -mat_increase_overlap_scalable - use a scalable algorithm to compute the overlap (supported by MPIAIJ matrix)
7286 
7287   Level: developer
7288 
7289   Note:
7290   The computed overlap preserves the matrix block sizes when the blocks are square.
7291   That is: if a matrix nonzero for a given block would increase the overlap all columns associated with
7292   that block are included in the overlap regardless of whether each specific column would increase the overlap.
7293 
7294 .seealso: [](ch_matrices), `Mat`, `PCASM`, `MatSetBlockSize()`, `MatIncreaseOverlapSplit()`, `MatCreateSubMatrices()`
7295 @*/
7296 PetscErrorCode MatIncreaseOverlap(Mat mat, PetscInt n, IS is[], PetscInt ov)
7297 {
7298   PetscInt i, bs, cbs;
7299 
7300   PetscFunctionBegin;
7301   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
7302   PetscValidType(mat, 1);
7303   PetscValidLogicalCollectiveInt(mat, n, 2);
7304   PetscCheck(n >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Must have one or more domains, you have %" PetscInt_FMT, n);
7305   if (n) {
7306     PetscAssertPointer(is, 3);
7307     for (i = 0; i < n; i++) PetscValidHeaderSpecific(is[i], IS_CLASSID, 3);
7308   }
7309   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
7310   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
7311   MatCheckPreallocated(mat, 1);
7312 
7313   if (!ov || !n) PetscFunctionReturn(PETSC_SUCCESS);
7314   PetscCall(PetscLogEventBegin(MAT_IncreaseOverlap, mat, 0, 0, 0));
7315   PetscUseTypeMethod(mat, increaseoverlap, n, is, ov);
7316   PetscCall(PetscLogEventEnd(MAT_IncreaseOverlap, mat, 0, 0, 0));
7317   PetscCall(MatGetBlockSizes(mat, &bs, &cbs));
7318   if (bs == cbs) {
7319     for (i = 0; i < n; i++) PetscCall(ISSetBlockSize(is[i], bs));
7320   }
7321   PetscFunctionReturn(PETSC_SUCCESS);
7322 }
7323 
7324 PetscErrorCode MatIncreaseOverlapSplit_Single(Mat, IS *, PetscInt);
7325 
7326 /*@
7327   MatIncreaseOverlapSplit - Given a set of submatrices indicated by index sets across
7328   a sub communicator, replaces the index sets by larger ones that represent submatrices with
7329   additional overlap.
7330 
7331   Collective
7332 
7333   Input Parameters:
7334 + mat - the matrix
7335 . n   - the number of index sets
7336 . is  - the array of index sets (these index sets will changed during the call)
7337 - ov  - the additional overlap requested
7338 
7339   `   Options Database Key:
7340 . -mat_increase_overlap_scalable - use a scalable algorithm to compute the overlap (supported by MPIAIJ matrix)
7341 
7342   Level: developer
7343 
7344 .seealso: [](ch_matrices), `Mat`, `MatCreateSubMatrices()`, `MatIncreaseOverlap()`
7345 @*/
7346 PetscErrorCode MatIncreaseOverlapSplit(Mat mat, PetscInt n, IS is[], PetscInt ov)
7347 {
7348   PetscInt i;
7349 
7350   PetscFunctionBegin;
7351   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
7352   PetscValidType(mat, 1);
7353   PetscCheck(n >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Must have one or more domains, you have %" PetscInt_FMT, n);
7354   if (n) {
7355     PetscAssertPointer(is, 3);
7356     PetscValidHeaderSpecific(*is, IS_CLASSID, 3);
7357   }
7358   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
7359   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
7360   MatCheckPreallocated(mat, 1);
7361   if (!ov) PetscFunctionReturn(PETSC_SUCCESS);
7362   PetscCall(PetscLogEventBegin(MAT_IncreaseOverlap, mat, 0, 0, 0));
7363   for (i = 0; i < n; i++) PetscCall(MatIncreaseOverlapSplit_Single(mat, &is[i], ov));
7364   PetscCall(PetscLogEventEnd(MAT_IncreaseOverlap, mat, 0, 0, 0));
7365   PetscFunctionReturn(PETSC_SUCCESS);
7366 }
7367 
7368 /*@
7369   MatGetBlockSize - Returns the matrix block size.
7370 
7371   Not Collective
7372 
7373   Input Parameter:
7374 . mat - the matrix
7375 
7376   Output Parameter:
7377 . bs - block size
7378 
7379   Level: intermediate
7380 
7381   Notes:
7382   Block row formats are `MATBAIJ` and `MATSBAIJ` ALWAYS have square block storage in the matrix.
7383 
7384   If the block size has not been set yet this routine returns 1.
7385 
7386 .seealso: [](ch_matrices), `Mat`, `MATBAIJ`, `MATSBAIJ`, `MatCreateSeqBAIJ()`, `MatCreateBAIJ()`, `MatGetBlockSizes()`
7387 @*/
7388 PetscErrorCode MatGetBlockSize(Mat mat, PetscInt *bs)
7389 {
7390   PetscFunctionBegin;
7391   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
7392   PetscAssertPointer(bs, 2);
7393   *bs = PetscAbs(mat->rmap->bs);
7394   PetscFunctionReturn(PETSC_SUCCESS);
7395 }
7396 
7397 /*@
7398   MatGetBlockSizes - Returns the matrix block row and column sizes.
7399 
7400   Not Collective
7401 
7402   Input Parameter:
7403 . mat - the matrix
7404 
7405   Output Parameters:
7406 + rbs - row block size
7407 - cbs - column block size
7408 
7409   Level: intermediate
7410 
7411   Notes:
7412   Block row formats are `MATBAIJ` and `MATSBAIJ` ALWAYS have square block storage in the matrix.
7413   If you pass a different block size for the columns than the rows, the row block size determines the square block storage.
7414 
7415   If a block size has not been set yet this routine returns 1.
7416 
7417 .seealso: [](ch_matrices), `Mat`, `MATBAIJ`, `MATSBAIJ`, `MatCreateSeqBAIJ()`, `MatCreateBAIJ()`, `MatGetBlockSize()`, `MatSetBlockSize()`, `MatSetBlockSizes()`
7418 @*/
7419 PetscErrorCode MatGetBlockSizes(Mat mat, PetscInt *rbs, PetscInt *cbs)
7420 {
7421   PetscFunctionBegin;
7422   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
7423   if (rbs) PetscAssertPointer(rbs, 2);
7424   if (cbs) PetscAssertPointer(cbs, 3);
7425   if (rbs) *rbs = PetscAbs(mat->rmap->bs);
7426   if (cbs) *cbs = PetscAbs(mat->cmap->bs);
7427   PetscFunctionReturn(PETSC_SUCCESS);
7428 }
7429 
7430 /*@
7431   MatSetBlockSize - Sets the matrix block size.
7432 
7433   Logically Collective
7434 
7435   Input Parameters:
7436 + mat - the matrix
7437 - bs  - block size
7438 
7439   Level: intermediate
7440 
7441   Notes:
7442   Block row formats are `MATBAIJ` and `MATSBAIJ` formats ALWAYS have square block storage in the matrix.
7443   This must be called before `MatSetUp()` or MatXXXSetPreallocation() (or will default to 1) and the block size cannot be changed later.
7444 
7445   For `MATAIJ` matrix format, this function can be called at a later stage, provided that the specified block size
7446   is compatible with the matrix local sizes.
7447 
7448 .seealso: [](ch_matrices), `Mat`, `MATBAIJ`, `MATSBAIJ`, `MATAIJ`, `MatCreateSeqBAIJ()`, `MatCreateBAIJ()`, `MatGetBlockSize()`, `MatSetBlockSizes()`, `MatGetBlockSizes()`
7449 @*/
7450 PetscErrorCode MatSetBlockSize(Mat mat, PetscInt bs)
7451 {
7452   PetscFunctionBegin;
7453   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
7454   PetscValidLogicalCollectiveInt(mat, bs, 2);
7455   PetscCall(MatSetBlockSizes(mat, bs, bs));
7456   PetscFunctionReturn(PETSC_SUCCESS);
7457 }
7458 
7459 typedef struct {
7460   PetscInt         n;
7461   IS              *is;
7462   Mat             *mat;
7463   PetscObjectState nonzerostate;
7464   Mat              C;
7465 } EnvelopeData;
7466 
7467 static PetscErrorCode EnvelopeDataDestroy(EnvelopeData *edata)
7468 {
7469   for (PetscInt i = 0; i < edata->n; i++) PetscCall(ISDestroy(&edata->is[i]));
7470   PetscCall(PetscFree(edata->is));
7471   PetscCall(PetscFree(edata));
7472   return PETSC_SUCCESS;
7473 }
7474 
7475 /*@
7476   MatComputeVariableBlockEnvelope - Given a matrix whose nonzeros are in blocks along the diagonal this computes and stores
7477   the sizes of these blocks in the matrix. An individual block may lie over several processes.
7478 
7479   Collective
7480 
7481   Input Parameter:
7482 . mat - the matrix
7483 
7484   Level: intermediate
7485 
7486   Notes:
7487   There can be zeros within the blocks
7488 
7489   The blocks can overlap between processes, including laying on more than two processes
7490 
7491 .seealso: [](ch_matrices), `Mat`, `MatInvertVariableBlockEnvelope()`, `MatSetVariableBlockSizes()`
7492 @*/
7493 PetscErrorCode MatComputeVariableBlockEnvelope(Mat mat)
7494 {
7495   PetscInt           n, *sizes, *starts, i = 0, env = 0, tbs = 0, lblocks = 0, rstart, II, ln = 0, cnt = 0, cstart, cend;
7496   PetscInt          *diag, *odiag, sc;
7497   VecScatter         scatter;
7498   PetscScalar       *seqv;
7499   const PetscScalar *parv;
7500   const PetscInt    *ia, *ja;
7501   PetscBool          set, flag, done;
7502   Mat                AA = mat, A;
7503   MPI_Comm           comm;
7504   PetscMPIInt        rank, size, tag;
7505   MPI_Status         status;
7506   PetscContainer     container;
7507   EnvelopeData      *edata;
7508   Vec                seq, par;
7509   IS                 isglobal;
7510 
7511   PetscFunctionBegin;
7512   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
7513   PetscCall(MatIsSymmetricKnown(mat, &set, &flag));
7514   if (!set || !flag) {
7515     /* TODO: only needs nonzero structure of transpose */
7516     PetscCall(MatTranspose(mat, MAT_INITIAL_MATRIX, &AA));
7517     PetscCall(MatAXPY(AA, 1.0, mat, DIFFERENT_NONZERO_PATTERN));
7518   }
7519   PetscCall(MatAIJGetLocalMat(AA, &A));
7520   PetscCall(MatGetRowIJ(A, 0, PETSC_FALSE, PETSC_FALSE, &n, &ia, &ja, &done));
7521   PetscCheck(done, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Unable to get IJ structure from matrix");
7522 
7523   PetscCall(MatGetLocalSize(mat, &n, NULL));
7524   PetscCall(PetscObjectGetNewTag((PetscObject)mat, &tag));
7525   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
7526   PetscCallMPI(MPI_Comm_size(comm, &size));
7527   PetscCallMPI(MPI_Comm_rank(comm, &rank));
7528 
7529   PetscCall(PetscMalloc2(n, &sizes, n, &starts));
7530 
7531   if (rank > 0) {
7532     PetscCallMPI(MPI_Recv(&env, 1, MPIU_INT, rank - 1, tag, comm, &status));
7533     PetscCallMPI(MPI_Recv(&tbs, 1, MPIU_INT, rank - 1, tag, comm, &status));
7534   }
7535   PetscCall(MatGetOwnershipRange(mat, &rstart, NULL));
7536   for (i = 0; i < n; i++) {
7537     env = PetscMax(env, ja[ia[i + 1] - 1]);
7538     II  = rstart + i;
7539     if (env == II) {
7540       starts[lblocks]  = tbs;
7541       sizes[lblocks++] = 1 + II - tbs;
7542       tbs              = 1 + II;
7543     }
7544   }
7545   if (rank < size - 1) {
7546     PetscCallMPI(MPI_Send(&env, 1, MPIU_INT, rank + 1, tag, comm));
7547     PetscCallMPI(MPI_Send(&tbs, 1, MPIU_INT, rank + 1, tag, comm));
7548   }
7549 
7550   PetscCall(MatRestoreRowIJ(A, 0, PETSC_FALSE, PETSC_FALSE, &n, &ia, &ja, &done));
7551   if (!set || !flag) PetscCall(MatDestroy(&AA));
7552   PetscCall(MatDestroy(&A));
7553 
7554   PetscCall(PetscNew(&edata));
7555   PetscCall(MatGetNonzeroState(mat, &edata->nonzerostate));
7556   edata->n = lblocks;
7557   /* create IS needed for extracting blocks from the original matrix */
7558   PetscCall(PetscMalloc1(lblocks, &edata->is));
7559   for (PetscInt i = 0; i < lblocks; i++) PetscCall(ISCreateStride(PETSC_COMM_SELF, sizes[i], starts[i], 1, &edata->is[i]));
7560 
7561   /* Create the resulting inverse matrix structure with preallocation information */
7562   PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &edata->C));
7563   PetscCall(MatSetSizes(edata->C, mat->rmap->n, mat->cmap->n, mat->rmap->N, mat->cmap->N));
7564   PetscCall(MatSetBlockSizesFromMats(edata->C, mat, mat));
7565   PetscCall(MatSetType(edata->C, MATAIJ));
7566 
7567   /* Communicate the start and end of each row, from each block to the correct rank */
7568   /* TODO: Use PetscSF instead of VecScatter */
7569   for (PetscInt i = 0; i < lblocks; i++) ln += sizes[i];
7570   PetscCall(VecCreateSeq(PETSC_COMM_SELF, 2 * ln, &seq));
7571   PetscCall(VecGetArrayWrite(seq, &seqv));
7572   for (PetscInt i = 0; i < lblocks; i++) {
7573     for (PetscInt j = 0; j < sizes[i]; j++) {
7574       seqv[cnt]     = starts[i];
7575       seqv[cnt + 1] = starts[i] + sizes[i];
7576       cnt += 2;
7577     }
7578   }
7579   PetscCall(VecRestoreArrayWrite(seq, &seqv));
7580   PetscCallMPI(MPI_Scan(&cnt, &sc, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)mat)));
7581   sc -= cnt;
7582   PetscCall(VecCreateMPI(PetscObjectComm((PetscObject)mat), 2 * mat->rmap->n, 2 * mat->rmap->N, &par));
7583   PetscCall(ISCreateStride(PETSC_COMM_SELF, cnt, sc, 1, &isglobal));
7584   PetscCall(VecScatterCreate(seq, NULL, par, isglobal, &scatter));
7585   PetscCall(ISDestroy(&isglobal));
7586   PetscCall(VecScatterBegin(scatter, seq, par, INSERT_VALUES, SCATTER_FORWARD));
7587   PetscCall(VecScatterEnd(scatter, seq, par, INSERT_VALUES, SCATTER_FORWARD));
7588   PetscCall(VecScatterDestroy(&scatter));
7589   PetscCall(VecDestroy(&seq));
7590   PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend));
7591   PetscCall(PetscMalloc2(mat->rmap->n, &diag, mat->rmap->n, &odiag));
7592   PetscCall(VecGetArrayRead(par, &parv));
7593   cnt = 0;
7594   PetscCall(MatGetSize(mat, NULL, &n));
7595   for (PetscInt i = 0; i < mat->rmap->n; i++) {
7596     PetscInt start, end, d = 0, od = 0;
7597 
7598     start = (PetscInt)PetscRealPart(parv[cnt]);
7599     end   = (PetscInt)PetscRealPart(parv[cnt + 1]);
7600     cnt += 2;
7601 
7602     if (start < cstart) {
7603       od += cstart - start + n - cend;
7604       d += cend - cstart;
7605     } else if (start < cend) {
7606       od += n - cend;
7607       d += cend - start;
7608     } else od += n - start;
7609     if (end <= cstart) {
7610       od -= cstart - end + n - cend;
7611       d -= cend - cstart;
7612     } else if (end < cend) {
7613       od -= n - cend;
7614       d -= cend - end;
7615     } else od -= n - end;
7616 
7617     odiag[i] = od;
7618     diag[i]  = d;
7619   }
7620   PetscCall(VecRestoreArrayRead(par, &parv));
7621   PetscCall(VecDestroy(&par));
7622   PetscCall(MatXAIJSetPreallocation(edata->C, mat->rmap->bs, diag, odiag, NULL, NULL));
7623   PetscCall(PetscFree2(diag, odiag));
7624   PetscCall(PetscFree2(sizes, starts));
7625 
7626   PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
7627   PetscCall(PetscContainerSetPointer(container, edata));
7628   PetscCall(PetscContainerSetUserDestroy(container, (PetscErrorCode(*)(void *))EnvelopeDataDestroy));
7629   PetscCall(PetscObjectCompose((PetscObject)mat, "EnvelopeData", (PetscObject)container));
7630   PetscCall(PetscObjectDereference((PetscObject)container));
7631   PetscFunctionReturn(PETSC_SUCCESS);
7632 }
7633 
7634 /*@
7635   MatInvertVariableBlockEnvelope - set matrix C to be the inverted block diagonal of matrix A
7636 
7637   Collective
7638 
7639   Input Parameters:
7640 + A     - the matrix
7641 - reuse - indicates if the `C` matrix was obtained from a previous call to this routine
7642 
7643   Output Parameter:
7644 . C - matrix with inverted block diagonal of `A`
7645 
7646   Level: advanced
7647 
7648   Note:
7649   For efficiency the matrix `A` should have all the nonzero entries clustered in smallish blocks along the diagonal.
7650 
7651 .seealso: [](ch_matrices), `Mat`, `MatInvertBlockDiagonal()`, `MatComputeBlockDiagonal()`
7652 @*/
7653 PetscErrorCode MatInvertVariableBlockEnvelope(Mat A, MatReuse reuse, Mat *C)
7654 {
7655   PetscContainer   container;
7656   EnvelopeData    *edata;
7657   PetscObjectState nonzerostate;
7658 
7659   PetscFunctionBegin;
7660   PetscCall(PetscObjectQuery((PetscObject)A, "EnvelopeData", (PetscObject *)&container));
7661   if (!container) {
7662     PetscCall(MatComputeVariableBlockEnvelope(A));
7663     PetscCall(PetscObjectQuery((PetscObject)A, "EnvelopeData", (PetscObject *)&container));
7664   }
7665   PetscCall(PetscContainerGetPointer(container, (void **)&edata));
7666   PetscCall(MatGetNonzeroState(A, &nonzerostate));
7667   PetscCheck(nonzerostate <= edata->nonzerostate, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Cannot handle changes to matrix nonzero structure");
7668   PetscCheck(reuse != MAT_REUSE_MATRIX || *C == edata->C, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "C matrix must be the same as previously output");
7669 
7670   PetscCall(MatCreateSubMatrices(A, edata->n, edata->is, edata->is, MAT_INITIAL_MATRIX, &edata->mat));
7671   *C = edata->C;
7672 
7673   for (PetscInt i = 0; i < edata->n; i++) {
7674     Mat          D;
7675     PetscScalar *dvalues;
7676 
7677     PetscCall(MatConvert(edata->mat[i], MATSEQDENSE, MAT_INITIAL_MATRIX, &D));
7678     PetscCall(MatSetOption(*C, MAT_ROW_ORIENTED, PETSC_FALSE));
7679     PetscCall(MatSeqDenseInvert(D));
7680     PetscCall(MatDenseGetArray(D, &dvalues));
7681     PetscCall(MatSetValuesIS(*C, edata->is[i], edata->is[i], dvalues, INSERT_VALUES));
7682     PetscCall(MatDestroy(&D));
7683   }
7684   PetscCall(MatDestroySubMatrices(edata->n, &edata->mat));
7685   PetscCall(MatAssemblyBegin(*C, MAT_FINAL_ASSEMBLY));
7686   PetscCall(MatAssemblyEnd(*C, MAT_FINAL_ASSEMBLY));
7687   PetscFunctionReturn(PETSC_SUCCESS);
7688 }
7689 
7690 /*@
7691   MatSetVariableBlockSizes - Sets diagonal point-blocks of the matrix that need not be of the same size
7692 
7693   Logically Collective
7694 
7695   Input Parameters:
7696 + mat     - the matrix
7697 . nblocks - the number of blocks on this process, each block can only exist on a single process
7698 - bsizes  - the block sizes
7699 
7700   Level: intermediate
7701 
7702   Notes:
7703   Currently used by `PCVPBJACOBI` for `MATAIJ` matrices
7704 
7705   Each variable point-block set of degrees of freedom must live on a single MPI process. That is a point block cannot straddle two MPI processes.
7706 
7707 .seealso: [](ch_matrices), `Mat`, `MatCreateSeqBAIJ()`, `MatCreateBAIJ()`, `MatGetBlockSize()`, `MatSetBlockSizes()`, `MatGetBlockSizes()`, `MatGetVariableBlockSizes()`,
7708           `MatComputeVariableBlockEnvelope()`, `PCVPBJACOBI`
7709 @*/
7710 PetscErrorCode MatSetVariableBlockSizes(Mat mat, PetscInt nblocks, PetscInt *bsizes)
7711 {
7712   PetscInt i, ncnt = 0, nlocal;
7713 
7714   PetscFunctionBegin;
7715   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
7716   PetscCheck(nblocks >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Number of local blocks must be great than or equal to zero");
7717   PetscCall(MatGetLocalSize(mat, &nlocal, NULL));
7718   for (i = 0; i < nblocks; i++) ncnt += bsizes[i];
7719   PetscCheck(ncnt == nlocal, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Sum of local block sizes %" PetscInt_FMT " does not equal local size of matrix %" PetscInt_FMT, ncnt, nlocal);
7720   PetscCall(PetscFree(mat->bsizes));
7721   mat->nblocks = nblocks;
7722   PetscCall(PetscMalloc1(nblocks, &mat->bsizes));
7723   PetscCall(PetscArraycpy(mat->bsizes, bsizes, nblocks));
7724   PetscFunctionReturn(PETSC_SUCCESS);
7725 }
7726 
7727 /*@C
7728   MatGetVariableBlockSizes - Gets a diagonal blocks of the matrix that need not be of the same size
7729 
7730   Logically Collective; No Fortran Support
7731 
7732   Input Parameter:
7733 . mat - the matrix
7734 
7735   Output Parameters:
7736 + nblocks - the number of blocks on this process
7737 - bsizes  - the block sizes
7738 
7739   Level: intermediate
7740 
7741 .seealso: [](ch_matrices), `Mat`, `MatCreateSeqBAIJ()`, `MatCreateBAIJ()`, `MatGetBlockSize()`, `MatSetBlockSizes()`, `MatGetBlockSizes()`, `MatSetVariableBlockSizes()`, `MatComputeVariableBlockEnvelope()`
7742 @*/
7743 PetscErrorCode MatGetVariableBlockSizes(Mat mat, PetscInt *nblocks, const PetscInt **bsizes)
7744 {
7745   PetscFunctionBegin;
7746   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
7747   *nblocks = mat->nblocks;
7748   *bsizes  = mat->bsizes;
7749   PetscFunctionReturn(PETSC_SUCCESS);
7750 }
7751 
7752 /*@
7753   MatSetBlockSizes - Sets the matrix block row and column sizes.
7754 
7755   Logically Collective
7756 
7757   Input Parameters:
7758 + mat - the matrix
7759 . rbs - row block size
7760 - cbs - column block size
7761 
7762   Level: intermediate
7763 
7764   Notes:
7765   Block row formats are `MATBAIJ` and  `MATSBAIJ`. These formats ALWAYS have square block storage in the matrix.
7766   If you pass a different block size for the columns than the rows, the row block size determines the square block storage.
7767   This must be called before `MatSetUp()` or MatXXXSetPreallocation() (or will default to 1) and the block size cannot be changed later.
7768 
7769   For `MATAIJ` matrix this function can be called at a later stage, provided that the specified block sizes
7770   are compatible with the matrix local sizes.
7771 
7772   The row and column block size determine the blocksize of the "row" and "column" vectors returned by `MatCreateVecs()`.
7773 
7774 .seealso: [](ch_matrices), `Mat`, `MatCreateSeqBAIJ()`, `MatCreateBAIJ()`, `MatGetBlockSize()`, `MatSetBlockSize()`, `MatGetBlockSizes()`
7775 @*/
7776 PetscErrorCode MatSetBlockSizes(Mat mat, PetscInt rbs, PetscInt cbs)
7777 {
7778   PetscFunctionBegin;
7779   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
7780   PetscValidLogicalCollectiveInt(mat, rbs, 2);
7781   PetscValidLogicalCollectiveInt(mat, cbs, 3);
7782   PetscTryTypeMethod(mat, setblocksizes, rbs, cbs);
7783   if (mat->rmap->refcnt) {
7784     ISLocalToGlobalMapping l2g  = NULL;
7785     PetscLayout            nmap = NULL;
7786 
7787     PetscCall(PetscLayoutDuplicate(mat->rmap, &nmap));
7788     if (mat->rmap->mapping) PetscCall(ISLocalToGlobalMappingDuplicate(mat->rmap->mapping, &l2g));
7789     PetscCall(PetscLayoutDestroy(&mat->rmap));
7790     mat->rmap          = nmap;
7791     mat->rmap->mapping = l2g;
7792   }
7793   if (mat->cmap->refcnt) {
7794     ISLocalToGlobalMapping l2g  = NULL;
7795     PetscLayout            nmap = NULL;
7796 
7797     PetscCall(PetscLayoutDuplicate(mat->cmap, &nmap));
7798     if (mat->cmap->mapping) PetscCall(ISLocalToGlobalMappingDuplicate(mat->cmap->mapping, &l2g));
7799     PetscCall(PetscLayoutDestroy(&mat->cmap));
7800     mat->cmap          = nmap;
7801     mat->cmap->mapping = l2g;
7802   }
7803   PetscCall(PetscLayoutSetBlockSize(mat->rmap, rbs));
7804   PetscCall(PetscLayoutSetBlockSize(mat->cmap, cbs));
7805   PetscFunctionReturn(PETSC_SUCCESS);
7806 }
7807 
7808 /*@
7809   MatSetBlockSizesFromMats - Sets the matrix block row and column sizes to match a pair of matrices
7810 
7811   Logically Collective
7812 
7813   Input Parameters:
7814 + mat     - the matrix
7815 . fromRow - matrix from which to copy row block size
7816 - fromCol - matrix from which to copy column block size (can be same as fromRow)
7817 
7818   Level: developer
7819 
7820 .seealso: [](ch_matrices), `Mat`, `MatCreateSeqBAIJ()`, `MatCreateBAIJ()`, `MatGetBlockSize()`, `MatSetBlockSizes()`
7821 @*/
7822 PetscErrorCode MatSetBlockSizesFromMats(Mat mat, Mat fromRow, Mat fromCol)
7823 {
7824   PetscFunctionBegin;
7825   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
7826   PetscValidHeaderSpecific(fromRow, MAT_CLASSID, 2);
7827   PetscValidHeaderSpecific(fromCol, MAT_CLASSID, 3);
7828   if (fromRow->rmap->bs > 0) PetscCall(PetscLayoutSetBlockSize(mat->rmap, fromRow->rmap->bs));
7829   if (fromCol->cmap->bs > 0) PetscCall(PetscLayoutSetBlockSize(mat->cmap, fromCol->cmap->bs));
7830   PetscFunctionReturn(PETSC_SUCCESS);
7831 }
7832 
7833 /*@
7834   MatResidual - Default routine to calculate the residual r = b - Ax
7835 
7836   Collective
7837 
7838   Input Parameters:
7839 + mat - the matrix
7840 . b   - the right-hand-side
7841 - x   - the approximate solution
7842 
7843   Output Parameter:
7844 . r - location to store the residual
7845 
7846   Level: developer
7847 
7848 .seealso: [](ch_matrices), `Mat`, `MatMult()`, `MatMultAdd()`, `PCMGSetResidual()`
7849 @*/
7850 PetscErrorCode MatResidual(Mat mat, Vec b, Vec x, Vec r)
7851 {
7852   PetscFunctionBegin;
7853   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
7854   PetscValidHeaderSpecific(b, VEC_CLASSID, 2);
7855   PetscValidHeaderSpecific(x, VEC_CLASSID, 3);
7856   PetscValidHeaderSpecific(r, VEC_CLASSID, 4);
7857   PetscValidType(mat, 1);
7858   MatCheckPreallocated(mat, 1);
7859   PetscCall(PetscLogEventBegin(MAT_Residual, mat, 0, 0, 0));
7860   if (!mat->ops->residual) {
7861     PetscCall(MatMult(mat, x, r));
7862     PetscCall(VecAYPX(r, -1.0, b));
7863   } else {
7864     PetscUseTypeMethod(mat, residual, b, x, r);
7865   }
7866   PetscCall(PetscLogEventEnd(MAT_Residual, mat, 0, 0, 0));
7867   PetscFunctionReturn(PETSC_SUCCESS);
7868 }
7869 
7870 /*MC
7871     MatGetRowIJF90 - Obtains the compressed row storage i and j indices for the local rows of a sparse matrix
7872 
7873     Synopsis:
7874     MatGetRowIJF90(Mat A, PetscInt shift, PetscBool symmetric, PetscBool inodecompressed, PetscInt n, {PetscInt, pointer :: ia(:)}, {PetscInt, pointer :: ja(:)}, PetscBool done,integer ierr)
7875 
7876     Not Collective
7877 
7878     Input Parameters:
7879 +   A - the matrix
7880 .   shift -  0 or 1 indicating we want the indices starting at 0 or 1
7881 .   symmetric - `PETSC_TRUE` or `PETSC_FALSE` indicating the matrix data structure should be symmetrized
7882 -   inodecompressed - `PETSC_TRUE` or `PETSC_FALSE`  indicating if the nonzero structure of the
7883                  inodes or the nonzero elements is wanted. For `MATBAIJ` matrices the compressed version is
7884                  always used.
7885 
7886     Output Parameters:
7887 +   n - number of local rows in the (possibly compressed) matrix
7888 .   ia - the row pointers; that is ia[0] = 0, ia[row] = ia[row-1] + number of elements in that row of the matrix
7889 .   ja - the column indices
7890 -   done - indicates if the routine actually worked and returned appropriate ia[] and ja[] arrays; callers
7891            are responsible for handling the case when done == `PETSC_FALSE` and ia and ja are not set
7892 
7893     Level: developer
7894 
7895     Note:
7896     Use  `MatRestoreRowIJF90()` when you no longer need access to the data
7897 
7898 .seealso: [](ch_matrices), [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatGetRowIJ()`, `MatRestoreRowIJ()`, `MatRestoreRowIJF90()`
7899 M*/
7900 
7901 /*MC
7902     MatRestoreRowIJF90 - restores the compressed row storage i and j indices for the local rows of a sparse matrix obtained with `MatGetRowIJF90()`
7903 
7904     Synopsis:
7905     MatRestoreRowIJF90(Mat A, PetscInt shift, PetscBool symmetric, PetscBool inodecompressed, PetscInt n, {PetscInt, pointer :: ia(:)}, {PetscInt, pointer :: ja(:)}, PetscBool done,integer ierr)
7906 
7907     Not Collective
7908 
7909     Input Parameters:
7910 +   A - the  matrix
7911 .   shift -  0 or 1 indicating we want the indices starting at 0 or 1
7912 .   symmetric - `PETSC_TRUE` or `PETSC_FALSE` indicating the matrix data structure should be symmetrized
7913     inodecompressed - `PETSC_TRUE` or `PETSC_FALSE`  indicating if the nonzero structure of the
7914                  inodes or the nonzero elements is wanted. For `MATBAIJ` matrices the compressed version is
7915                  always used.
7916 .   n - number of local rows in the (possibly compressed) matrix
7917 .   ia - the row pointers; that is ia[0] = 0, ia[row] = ia[row-1] + number of elements in that row of the matrix
7918 .   ja - the column indices
7919 -   done - indicates if the routine actually worked and returned appropriate ia[] and ja[] arrays; callers
7920            are responsible for handling the case when done == `PETSC_FALSE` and ia and ja are not set
7921 
7922     Level: developer
7923 
7924 .seealso: [](ch_matrices), [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatGetRowIJ()`, `MatRestoreRowIJ()`, `MatGetRowIJF90()`
7925 M*/
7926 
7927 /*@C
7928   MatGetRowIJ - Returns the compressed row storage i and j indices for the local rows of a sparse matrix
7929 
7930   Collective
7931 
7932   Input Parameters:
7933 + mat             - the matrix
7934 . shift           - 0 or 1 indicating we want the indices starting at 0 or 1
7935 . symmetric       - `PETSC_TRUE` or `PETSC_FALSE` indicating the matrix data structure should be symmetrized
7936 - inodecompressed - `PETSC_TRUE` or `PETSC_FALSE`  indicating if the nonzero structure of the
7937                  inodes or the nonzero elements is wanted. For `MATBAIJ` matrices the compressed version is
7938                  always used.
7939 
7940   Output Parameters:
7941 + n    - number of local rows in the (possibly compressed) matrix, use `NULL` if not needed
7942 . ia   - the row pointers; that is ia[0] = 0, ia[row] = ia[row-1] + number of elements in that row of the matrix, use `NULL` if not needed
7943 . ja   - the column indices, use `NULL` if not needed
7944 - done - indicates if the routine actually worked and returned appropriate ia[] and ja[] arrays; callers
7945            are responsible for handling the case when done == `PETSC_FALSE` and ia and ja are not set
7946 
7947   Level: developer
7948 
7949   Notes:
7950   You CANNOT change any of the ia[] or ja[] values.
7951 
7952   Use `MatRestoreRowIJ()` when you are finished accessing the ia[] and ja[] values.
7953 
7954   Fortran Notes:
7955   Use
7956 .vb
7957     PetscInt, pointer :: ia(:),ja(:)
7958     call MatGetRowIJF90(mat,shift,symmetric,inodecompressed,n,ia,ja,done,ierr)
7959     ! Access the ith and jth entries via ia(i) and ja(j)
7960 .ve
7961 
7962   `MatGetRowIJ()` Fortran binding is deprecated (since PETSc 3.19), use `MatGetRowIJF90()`
7963 
7964 .seealso: [](ch_matrices), `Mat`, `MATAIJ`, `MatGetRowIJF90()`, `MatGetColumnIJ()`, `MatRestoreRowIJ()`, `MatSeqAIJGetArray()`
7965 @*/
7966 PetscErrorCode MatGetRowIJ(Mat mat, PetscInt shift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *n, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
7967 {
7968   PetscFunctionBegin;
7969   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
7970   PetscValidType(mat, 1);
7971   if (n) PetscAssertPointer(n, 5);
7972   if (ia) PetscAssertPointer(ia, 6);
7973   if (ja) PetscAssertPointer(ja, 7);
7974   if (done) PetscAssertPointer(done, 8);
7975   MatCheckPreallocated(mat, 1);
7976   if (!mat->ops->getrowij && done) *done = PETSC_FALSE;
7977   else {
7978     if (done) *done = PETSC_TRUE;
7979     PetscCall(PetscLogEventBegin(MAT_GetRowIJ, mat, 0, 0, 0));
7980     PetscUseTypeMethod(mat, getrowij, shift, symmetric, inodecompressed, n, ia, ja, done);
7981     PetscCall(PetscLogEventEnd(MAT_GetRowIJ, mat, 0, 0, 0));
7982   }
7983   PetscFunctionReturn(PETSC_SUCCESS);
7984 }
7985 
7986 /*@C
7987   MatGetColumnIJ - Returns the compressed column storage i and j indices for sequential matrices.
7988 
7989   Collective
7990 
7991   Input Parameters:
7992 + mat             - the matrix
7993 . shift           - 1 or zero indicating we want the indices starting at 0 or 1
7994 . symmetric       - `PETSC_TRUE` or `PETSC_FALSE` indicating the matrix data structure should be
7995                 symmetrized
7996 . inodecompressed - `PETSC_TRUE` or `PETSC_FALSE` indicating if the nonzero structure of the
7997                  inodes or the nonzero elements is wanted. For `MATBAIJ` matrices the compressed version is
7998                  always used.
7999 . n               - number of columns in the (possibly compressed) matrix
8000 . ia              - the column pointers; that is ia[0] = 0, ia[col] = i[col-1] + number of elements in that col of the matrix
8001 - ja              - the row indices
8002 
8003   Output Parameter:
8004 . done - `PETSC_TRUE` or `PETSC_FALSE`, indicating whether the values have been returned
8005 
8006   Level: developer
8007 
8008 .seealso: [](ch_matrices), `Mat`, `MatGetRowIJ()`, `MatRestoreColumnIJ()`
8009 @*/
8010 PetscErrorCode MatGetColumnIJ(Mat mat, PetscInt shift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *n, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
8011 {
8012   PetscFunctionBegin;
8013   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
8014   PetscValidType(mat, 1);
8015   PetscAssertPointer(n, 5);
8016   if (ia) PetscAssertPointer(ia, 6);
8017   if (ja) PetscAssertPointer(ja, 7);
8018   PetscAssertPointer(done, 8);
8019   MatCheckPreallocated(mat, 1);
8020   if (!mat->ops->getcolumnij) *done = PETSC_FALSE;
8021   else {
8022     *done = PETSC_TRUE;
8023     PetscUseTypeMethod(mat, getcolumnij, shift, symmetric, inodecompressed, n, ia, ja, done);
8024   }
8025   PetscFunctionReturn(PETSC_SUCCESS);
8026 }
8027 
8028 /*@C
8029   MatRestoreRowIJ - Call after you are completed with the ia,ja indices obtained with `MatGetRowIJ()`.
8030 
8031   Collective
8032 
8033   Input Parameters:
8034 + mat             - the matrix
8035 . shift           - 1 or zero indicating we want the indices starting at 0 or 1
8036 . symmetric       - `PETSC_TRUE` or `PETSC_FALSE` indicating the matrix data structure should be symmetrized
8037 . inodecompressed - `PETSC_TRUE` or `PETSC_FALSE` indicating if the nonzero structure of the
8038                  inodes or the nonzero elements is wanted. For `MATBAIJ` matrices the compressed version is
8039                  always used.
8040 . n               - size of (possibly compressed) matrix
8041 . ia              - the row pointers
8042 - ja              - the column indices
8043 
8044   Output Parameter:
8045 . done - `PETSC_TRUE` or `PETSC_FALSE` indicated that the values have been returned
8046 
8047   Level: developer
8048 
8049   Note:
8050   This routine zeros out `n`, `ia`, and `ja`. This is to prevent accidental
8051   us of the array after it has been restored. If you pass `NULL`, it will
8052   not zero the pointers.  Use of ia or ja after `MatRestoreRowIJ()` is invalid.
8053 
8054   Fortran Note:
8055   `MatRestoreRowIJ()` Fortran binding is deprecated (since PETSc 3.19), use `MatRestoreRowIJF90()`
8056 
8057 .seealso: [](ch_matrices), `Mat`, `MatGetRowIJ()`, `MatRestoreRowIJF90()`, `MatRestoreColumnIJ()`
8058 @*/
8059 PetscErrorCode MatRestoreRowIJ(Mat mat, PetscInt shift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *n, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
8060 {
8061   PetscFunctionBegin;
8062   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
8063   PetscValidType(mat, 1);
8064   if (ia) PetscAssertPointer(ia, 6);
8065   if (ja) PetscAssertPointer(ja, 7);
8066   if (done) PetscAssertPointer(done, 8);
8067   MatCheckPreallocated(mat, 1);
8068 
8069   if (!mat->ops->restorerowij && done) *done = PETSC_FALSE;
8070   else {
8071     if (done) *done = PETSC_TRUE;
8072     PetscUseTypeMethod(mat, restorerowij, shift, symmetric, inodecompressed, n, ia, ja, done);
8073     if (n) *n = 0;
8074     if (ia) *ia = NULL;
8075     if (ja) *ja = NULL;
8076   }
8077   PetscFunctionReturn(PETSC_SUCCESS);
8078 }
8079 
8080 /*@C
8081   MatRestoreColumnIJ - Call after you are completed with the ia,ja indices obtained with `MatGetColumnIJ()`.
8082 
8083   Collective
8084 
8085   Input Parameters:
8086 + mat             - the matrix
8087 . shift           - 1 or zero indicating we want the indices starting at 0 or 1
8088 . symmetric       - `PETSC_TRUE` or `PETSC_FALSE` indicating the matrix data structure should be symmetrized
8089 - inodecompressed - `PETSC_TRUE` or `PETSC_FALSE` indicating if the nonzero structure of the
8090                  inodes or the nonzero elements is wanted. For `MATBAIJ` matrices the compressed version is
8091                  always used.
8092 
8093   Output Parameters:
8094 + n    - size of (possibly compressed) matrix
8095 . ia   - the column pointers
8096 . ja   - the row indices
8097 - done - `PETSC_TRUE` or `PETSC_FALSE` indicated that the values have been returned
8098 
8099   Level: developer
8100 
8101 .seealso: [](ch_matrices), `Mat`, `MatGetColumnIJ()`, `MatRestoreRowIJ()`
8102 @*/
8103 PetscErrorCode MatRestoreColumnIJ(Mat mat, PetscInt shift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *n, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
8104 {
8105   PetscFunctionBegin;
8106   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
8107   PetscValidType(mat, 1);
8108   if (ia) PetscAssertPointer(ia, 6);
8109   if (ja) PetscAssertPointer(ja, 7);
8110   PetscAssertPointer(done, 8);
8111   MatCheckPreallocated(mat, 1);
8112 
8113   if (!mat->ops->restorecolumnij) *done = PETSC_FALSE;
8114   else {
8115     *done = PETSC_TRUE;
8116     PetscUseTypeMethod(mat, restorecolumnij, shift, symmetric, inodecompressed, n, ia, ja, done);
8117     if (n) *n = 0;
8118     if (ia) *ia = NULL;
8119     if (ja) *ja = NULL;
8120   }
8121   PetscFunctionReturn(PETSC_SUCCESS);
8122 }
8123 
8124 /*@C
8125   MatColoringPatch - Used inside matrix coloring routines that use `MatGetRowIJ()` and/or
8126   `MatGetColumnIJ()`.
8127 
8128   Collective
8129 
8130   Input Parameters:
8131 + mat        - the matrix
8132 . ncolors    - maximum color value
8133 . n          - number of entries in colorarray
8134 - colorarray - array indicating color for each column
8135 
8136   Output Parameter:
8137 . iscoloring - coloring generated using colorarray information
8138 
8139   Level: developer
8140 
8141 .seealso: [](ch_matrices), `Mat`, `MatGetRowIJ()`, `MatGetColumnIJ()`
8142 @*/
8143 PetscErrorCode MatColoringPatch(Mat mat, PetscInt ncolors, PetscInt n, ISColoringValue colorarray[], ISColoring *iscoloring)
8144 {
8145   PetscFunctionBegin;
8146   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
8147   PetscValidType(mat, 1);
8148   PetscAssertPointer(colorarray, 4);
8149   PetscAssertPointer(iscoloring, 5);
8150   MatCheckPreallocated(mat, 1);
8151 
8152   if (!mat->ops->coloringpatch) {
8153     PetscCall(ISColoringCreate(PetscObjectComm((PetscObject)mat), ncolors, n, colorarray, PETSC_OWN_POINTER, iscoloring));
8154   } else {
8155     PetscUseTypeMethod(mat, coloringpatch, ncolors, n, colorarray, iscoloring);
8156   }
8157   PetscFunctionReturn(PETSC_SUCCESS);
8158 }
8159 
8160 /*@
8161   MatSetUnfactored - Resets a factored matrix to be treated as unfactored.
8162 
8163   Logically Collective
8164 
8165   Input Parameter:
8166 . mat - the factored matrix to be reset
8167 
8168   Level: developer
8169 
8170   Notes:
8171   This routine should be used only with factored matrices formed by in-place
8172   factorization via ILU(0) (or by in-place LU factorization for the `MATSEQDENSE`
8173   format).  This option can save memory, for example, when solving nonlinear
8174   systems with a matrix-free Newton-Krylov method and a matrix-based, in-place
8175   ILU(0) preconditioner.
8176 
8177   One can specify in-place ILU(0) factorization by calling
8178 .vb
8179      PCType(pc,PCILU);
8180      PCFactorSeUseInPlace(pc);
8181 .ve
8182   or by using the options -pc_type ilu -pc_factor_in_place
8183 
8184   In-place factorization ILU(0) can also be used as a local
8185   solver for the blocks within the block Jacobi or additive Schwarz
8186   methods (runtime option: -sub_pc_factor_in_place).  See Users-Manual: ch_pc
8187   for details on setting local solver options.
8188 
8189   Most users should employ the `KSP` interface for linear solvers
8190   instead of working directly with matrix algebra routines such as this.
8191   See, e.g., `KSPCreate()`.
8192 
8193 .seealso: [](ch_matrices), `Mat`, `PCFactorSetUseInPlace()`, `PCFactorGetUseInPlace()`
8194 @*/
8195 PetscErrorCode MatSetUnfactored(Mat mat)
8196 {
8197   PetscFunctionBegin;
8198   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
8199   PetscValidType(mat, 1);
8200   MatCheckPreallocated(mat, 1);
8201   mat->factortype = MAT_FACTOR_NONE;
8202   if (!mat->ops->setunfactored) PetscFunctionReturn(PETSC_SUCCESS);
8203   PetscUseTypeMethod(mat, setunfactored);
8204   PetscFunctionReturn(PETSC_SUCCESS);
8205 }
8206 
8207 /*MC
8208     MatDenseGetArrayF90 - Accesses a matrix array from Fortran
8209 
8210     Synopsis:
8211     MatDenseGetArrayF90(Mat x,{Scalar, pointer :: xx_v(:,:)},integer ierr)
8212 
8213     Not Collective
8214 
8215     Input Parameter:
8216 .   x - matrix
8217 
8218     Output Parameters:
8219 +   xx_v - the Fortran pointer to the array
8220 -   ierr - error code
8221 
8222     Example of Usage:
8223 .vb
8224       PetscScalar, pointer xx_v(:,:)
8225       ....
8226       call MatDenseGetArrayF90(x,xx_v,ierr)
8227       a = xx_v(3)
8228       call MatDenseRestoreArrayF90(x,xx_v,ierr)
8229 .ve
8230 
8231     Level: advanced
8232 
8233 .seealso: [](ch_matrices), `Mat`, `MatDenseRestoreArrayF90()`, `MatDenseGetArray()`, `MatDenseRestoreArray()`, `MatSeqAIJGetArrayF90()`
8234 M*/
8235 
8236 /*MC
8237     MatDenseRestoreArrayF90 - Restores a matrix array that has been
8238     accessed with `MatDenseGetArrayF90()`.
8239 
8240     Synopsis:
8241     MatDenseRestoreArrayF90(Mat x,{Scalar, pointer :: xx_v(:,:)},integer ierr)
8242 
8243     Not Collective
8244 
8245     Input Parameters:
8246 +   x - matrix
8247 -   xx_v - the Fortran90 pointer to the array
8248 
8249     Output Parameter:
8250 .   ierr - error code
8251 
8252     Example of Usage:
8253 .vb
8254        PetscScalar, pointer xx_v(:,:)
8255        ....
8256        call MatDenseGetArrayF90(x,xx_v,ierr)
8257        a = xx_v(3)
8258        call MatDenseRestoreArrayF90(x,xx_v,ierr)
8259 .ve
8260 
8261     Level: advanced
8262 
8263 .seealso: [](ch_matrices), `Mat`, `MatDenseGetArrayF90()`, `MatDenseGetArray()`, `MatDenseRestoreArray()`, `MatSeqAIJRestoreArrayF90()`
8264 M*/
8265 
8266 /*MC
8267     MatSeqAIJGetArrayF90 - Accesses a matrix array from Fortran.
8268 
8269     Synopsis:
8270     MatSeqAIJGetArrayF90(Mat x,{Scalar, pointer :: xx_v(:)},integer ierr)
8271 
8272     Not Collective
8273 
8274     Input Parameter:
8275 .   x - matrix
8276 
8277     Output Parameters:
8278 +   xx_v - the Fortran pointer to the array
8279 -   ierr - error code
8280 
8281     Example of Usage:
8282 .vb
8283       PetscScalar, pointer xx_v(:)
8284       ....
8285       call MatSeqAIJGetArrayF90(x,xx_v,ierr)
8286       a = xx_v(3)
8287       call MatSeqAIJRestoreArrayF90(x,xx_v,ierr)
8288 .ve
8289 
8290     Level: advanced
8291 
8292 .seealso: [](ch_matrices), `Mat`, `MatSeqAIJRestoreArrayF90()`, `MatSeqAIJGetArray()`, `MatSeqAIJRestoreArray()`, `MatDenseGetArrayF90()`
8293 M*/
8294 
8295 /*MC
8296     MatSeqAIJRestoreArrayF90 - Restores a matrix array that has been
8297     accessed with `MatSeqAIJGetArrayF90()`.
8298 
8299     Synopsis:
8300     MatSeqAIJRestoreArrayF90(Mat x,{Scalar, pointer :: xx_v(:)},integer ierr)
8301 
8302     Not Collective
8303 
8304     Input Parameters:
8305 +   x - matrix
8306 -   xx_v - the Fortran90 pointer to the array
8307 
8308     Output Parameter:
8309 .   ierr - error code
8310 
8311     Example of Usage:
8312 .vb
8313        PetscScalar, pointer xx_v(:)
8314        ....
8315        call MatSeqAIJGetArrayF90(x,xx_v,ierr)
8316        a = xx_v(3)
8317        call MatSeqAIJRestoreArrayF90(x,xx_v,ierr)
8318 .ve
8319 
8320     Level: advanced
8321 
8322 .seealso: [](ch_matrices), `Mat`, `MatSeqAIJGetArrayF90()`, `MatSeqAIJGetArray()`, `MatSeqAIJRestoreArray()`, `MatDenseRestoreArrayF90()`
8323 M*/
8324 
8325 /*@
8326   MatCreateSubMatrix - Gets a single submatrix on the same number of processors
8327   as the original matrix.
8328 
8329   Collective
8330 
8331   Input Parameters:
8332 + mat   - the original matrix
8333 . isrow - parallel `IS` containing the rows this processor should obtain
8334 . iscol - parallel `IS` containing all columns you wish to keep. Each process should list the columns that will be in IT's "diagonal part" in the new matrix.
8335 - cll   - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
8336 
8337   Output Parameter:
8338 . newmat - the new submatrix, of the same type as the original matrix
8339 
8340   Level: advanced
8341 
8342   Notes:
8343   The submatrix will be able to be multiplied with vectors using the same layout as `iscol`.
8344 
8345   Some matrix types place restrictions on the row and column indices, such
8346   as that they be sorted or that they be equal to each other. For `MATBAIJ` and `MATSBAIJ` matrices the indices must include all rows/columns of a block;
8347   for example, if the block size is 3 one cannot select the 0 and 2 rows without selecting the 1 row.
8348 
8349   The index sets may not have duplicate entries.
8350 
8351   The first time this is called you should use a cll of `MAT_INITIAL_MATRIX`,
8352   the `MatCreateSubMatrix()` routine will create the newmat for you. Any additional calls
8353   to this routine with a mat of the same nonzero structure and with a call of `MAT_REUSE_MATRIX`
8354   will reuse the matrix generated the first time.  You should call `MatDestroy()` on `newmat` when
8355   you are finished using it.
8356 
8357   The communicator of the newly obtained matrix is ALWAYS the same as the communicator of
8358   the input matrix.
8359 
8360   If `iscol` is `NULL` then all columns are obtained (not supported in Fortran).
8361 
8362   Example usage:
8363   Consider the following 8x8 matrix with 34 non-zero values, that is
8364   assembled across 3 processors. Let's assume that proc0 owns 3 rows,
8365   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
8366   as follows
8367 .vb
8368             1  2  0  |  0  3  0  |  0  4
8369     Proc0   0  5  6  |  7  0  0  |  8  0
8370             9  0 10  | 11  0  0  | 12  0
8371     -------------------------------------
8372            13  0 14  | 15 16 17  |  0  0
8373     Proc1   0 18  0  | 19 20 21  |  0  0
8374             0  0  0  | 22 23  0  | 24  0
8375     -------------------------------------
8376     Proc2  25 26 27  |  0  0 28  | 29  0
8377            30  0  0  | 31 32 33  |  0 34
8378 .ve
8379 
8380   Suppose `isrow` = [0 1 | 4 | 6 7] and `iscol` = [1 2 | 3 4 5 | 6].  The resulting submatrix is
8381 
8382 .vb
8383             2  0  |  0  3  0  |  0
8384     Proc0   5  6  |  7  0  0  |  8
8385     -------------------------------
8386     Proc1  18  0  | 19 20 21  |  0
8387     -------------------------------
8388     Proc2  26 27  |  0  0 28  | 29
8389             0  0  | 31 32 33  |  0
8390 .ve
8391 
8392 .seealso: [](ch_matrices), `Mat`, `MatCreateSubMatrices()`, `MatCreateSubMatricesMPI()`, `MatCreateSubMatrixVirtual()`, `MatSubMatrixVirtualUpdate()`
8393 @*/
8394 PetscErrorCode MatCreateSubMatrix(Mat mat, IS isrow, IS iscol, MatReuse cll, Mat *newmat)
8395 {
8396   PetscMPIInt size;
8397   Mat        *local;
8398   IS          iscoltmp;
8399   PetscBool   flg;
8400 
8401   PetscFunctionBegin;
8402   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
8403   PetscValidHeaderSpecific(isrow, IS_CLASSID, 2);
8404   if (iscol) PetscValidHeaderSpecific(iscol, IS_CLASSID, 3);
8405   PetscAssertPointer(newmat, 5);
8406   if (cll == MAT_REUSE_MATRIX) PetscValidHeaderSpecific(*newmat, MAT_CLASSID, 5);
8407   PetscValidType(mat, 1);
8408   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
8409   PetscCheck(cll != MAT_IGNORE_MATRIX, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Cannot use MAT_IGNORE_MATRIX");
8410 
8411   MatCheckPreallocated(mat, 1);
8412   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)mat), &size));
8413 
8414   if (!iscol || isrow == iscol) {
8415     PetscBool   stride;
8416     PetscMPIInt grabentirematrix = 0, grab;
8417     PetscCall(PetscObjectTypeCompare((PetscObject)isrow, ISSTRIDE, &stride));
8418     if (stride) {
8419       PetscInt first, step, n, rstart, rend;
8420       PetscCall(ISStrideGetInfo(isrow, &first, &step));
8421       if (step == 1) {
8422         PetscCall(MatGetOwnershipRange(mat, &rstart, &rend));
8423         if (rstart == first) {
8424           PetscCall(ISGetLocalSize(isrow, &n));
8425           if (n == rend - rstart) grabentirematrix = 1;
8426         }
8427       }
8428     }
8429     PetscCall(MPIU_Allreduce(&grabentirematrix, &grab, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat)));
8430     if (grab) {
8431       PetscCall(PetscInfo(mat, "Getting entire matrix as submatrix\n"));
8432       if (cll == MAT_INITIAL_MATRIX) {
8433         *newmat = mat;
8434         PetscCall(PetscObjectReference((PetscObject)mat));
8435       }
8436       PetscFunctionReturn(PETSC_SUCCESS);
8437     }
8438   }
8439 
8440   if (!iscol) {
8441     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), mat->cmap->n, mat->cmap->rstart, 1, &iscoltmp));
8442   } else {
8443     iscoltmp = iscol;
8444   }
8445 
8446   /* if original matrix is on just one processor then use submatrix generated */
8447   if (mat->ops->createsubmatrices && !mat->ops->createsubmatrix && size == 1 && cll == MAT_REUSE_MATRIX) {
8448     PetscCall(MatCreateSubMatrices(mat, 1, &isrow, &iscoltmp, MAT_REUSE_MATRIX, &newmat));
8449     goto setproperties;
8450   } else if (mat->ops->createsubmatrices && !mat->ops->createsubmatrix && size == 1) {
8451     PetscCall(MatCreateSubMatrices(mat, 1, &isrow, &iscoltmp, MAT_INITIAL_MATRIX, &local));
8452     *newmat = *local;
8453     PetscCall(PetscFree(local));
8454     goto setproperties;
8455   } else if (!mat->ops->createsubmatrix) {
8456     /* Create a new matrix type that implements the operation using the full matrix */
8457     PetscCall(PetscLogEventBegin(MAT_CreateSubMat, mat, 0, 0, 0));
8458     switch (cll) {
8459     case MAT_INITIAL_MATRIX:
8460       PetscCall(MatCreateSubMatrixVirtual(mat, isrow, iscoltmp, newmat));
8461       break;
8462     case MAT_REUSE_MATRIX:
8463       PetscCall(MatSubMatrixVirtualUpdate(*newmat, mat, isrow, iscoltmp));
8464       break;
8465     default:
8466       SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_OUTOFRANGE, "Invalid MatReuse, must be either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX");
8467     }
8468     PetscCall(PetscLogEventEnd(MAT_CreateSubMat, mat, 0, 0, 0));
8469     goto setproperties;
8470   }
8471 
8472   PetscCall(PetscLogEventBegin(MAT_CreateSubMat, mat, 0, 0, 0));
8473   PetscUseTypeMethod(mat, createsubmatrix, isrow, iscoltmp, cll, newmat);
8474   PetscCall(PetscLogEventEnd(MAT_CreateSubMat, mat, 0, 0, 0));
8475 
8476 setproperties:
8477   PetscCall(ISEqualUnsorted(isrow, iscoltmp, &flg));
8478   if (flg) PetscCall(MatPropagateSymmetryOptions(mat, *newmat));
8479   if (!iscol) PetscCall(ISDestroy(&iscoltmp));
8480   if (*newmat && cll == MAT_INITIAL_MATRIX) PetscCall(PetscObjectStateIncrease((PetscObject)*newmat));
8481   PetscFunctionReturn(PETSC_SUCCESS);
8482 }
8483 
8484 /*@
8485   MatPropagateSymmetryOptions - Propagates symmetry options set on a matrix to another matrix
8486 
8487   Not Collective
8488 
8489   Input Parameters:
8490 + A - the matrix we wish to propagate options from
8491 - B - the matrix we wish to propagate options to
8492 
8493   Level: beginner
8494 
8495   Note:
8496   Propagates the options associated to `MAT_SYMMETRY_ETERNAL`, `MAT_STRUCTURALLY_SYMMETRIC`, `MAT_HERMITIAN`, `MAT_SPD`, `MAT_SYMMETRIC`, and `MAT_STRUCTURAL_SYMMETRY_ETERNAL`
8497 
8498 .seealso: [](ch_matrices), `Mat`, `MatSetOption()`, `MatIsSymmetricKnown()`, `MatIsSPDKnown()`, `MatIsHermitianKnown()`, `MatIsStructurallySymmetricKnown()`
8499 @*/
8500 PetscErrorCode MatPropagateSymmetryOptions(Mat A, Mat B)
8501 {
8502   PetscFunctionBegin;
8503   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
8504   PetscValidHeaderSpecific(B, MAT_CLASSID, 2);
8505   B->symmetry_eternal            = A->symmetry_eternal;
8506   B->structural_symmetry_eternal = A->structural_symmetry_eternal;
8507   B->symmetric                   = A->symmetric;
8508   B->structurally_symmetric      = A->structurally_symmetric;
8509   B->spd                         = A->spd;
8510   B->hermitian                   = A->hermitian;
8511   PetscFunctionReturn(PETSC_SUCCESS);
8512 }
8513 
8514 /*@
8515   MatStashSetInitialSize - sets the sizes of the matrix stash, that is
8516   used during the assembly process to store values that belong to
8517   other processors.
8518 
8519   Not Collective
8520 
8521   Input Parameters:
8522 + mat   - the matrix
8523 . size  - the initial size of the stash.
8524 - bsize - the initial size of the block-stash(if used).
8525 
8526   Options Database Keys:
8527 + -matstash_initial_size <size> or <size0,size1,...sizep-1>            - set initial size
8528 - -matstash_block_initial_size <bsize>  or <bsize0,bsize1,...bsizep-1> - set initial block size
8529 
8530   Level: intermediate
8531 
8532   Notes:
8533   The block-stash is used for values set with `MatSetValuesBlocked()` while
8534   the stash is used for values set with `MatSetValues()`
8535 
8536   Run with the option -info and look for output of the form
8537   MatAssemblyBegin_MPIXXX:Stash has MM entries, uses nn mallocs.
8538   to determine the appropriate value, MM, to use for size and
8539   MatAssemblyBegin_MPIXXX:Block-Stash has BMM entries, uses nn mallocs.
8540   to determine the value, BMM to use for bsize
8541 
8542 .seealso: [](ch_matrices), `MatAssemblyBegin()`, `MatAssemblyEnd()`, `Mat`, `MatStashGetInfo()`
8543 @*/
8544 PetscErrorCode MatStashSetInitialSize(Mat mat, PetscInt size, PetscInt bsize)
8545 {
8546   PetscFunctionBegin;
8547   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
8548   PetscValidType(mat, 1);
8549   PetscCall(MatStashSetInitialSize_Private(&mat->stash, size));
8550   PetscCall(MatStashSetInitialSize_Private(&mat->bstash, bsize));
8551   PetscFunctionReturn(PETSC_SUCCESS);
8552 }
8553 
8554 /*@
8555   MatInterpolateAdd - $w = y + A*x$ or $A^T*x$ depending on the shape of
8556   the matrix
8557 
8558   Neighbor-wise Collective
8559 
8560   Input Parameters:
8561 + A - the matrix
8562 . x - the vector to be multiplied by the interpolation operator
8563 - y - the vector to be added to the result
8564 
8565   Output Parameter:
8566 . w - the resulting vector
8567 
8568   Level: intermediate
8569 
8570   Notes:
8571   `w` may be the same vector as `y`.
8572 
8573   This allows one to use either the restriction or interpolation (its transpose)
8574   matrix to do the interpolation
8575 
8576 .seealso: [](ch_matrices), `Mat`, `MatMultAdd()`, `MatMultTransposeAdd()`, `MatRestrict()`, `PCMG`
8577 @*/
8578 PetscErrorCode MatInterpolateAdd(Mat A, Vec x, Vec y, Vec w)
8579 {
8580   PetscInt M, N, Ny;
8581 
8582   PetscFunctionBegin;
8583   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
8584   PetscValidHeaderSpecific(x, VEC_CLASSID, 2);
8585   PetscValidHeaderSpecific(y, VEC_CLASSID, 3);
8586   PetscValidHeaderSpecific(w, VEC_CLASSID, 4);
8587   PetscCall(MatGetSize(A, &M, &N));
8588   PetscCall(VecGetSize(y, &Ny));
8589   if (M == Ny) {
8590     PetscCall(MatMultAdd(A, x, y, w));
8591   } else {
8592     PetscCall(MatMultTransposeAdd(A, x, y, w));
8593   }
8594   PetscFunctionReturn(PETSC_SUCCESS);
8595 }
8596 
8597 /*@
8598   MatInterpolate - $y = A*x$ or $A^T*x$ depending on the shape of
8599   the matrix
8600 
8601   Neighbor-wise Collective
8602 
8603   Input Parameters:
8604 + A - the matrix
8605 - x - the vector to be interpolated
8606 
8607   Output Parameter:
8608 . y - the resulting vector
8609 
8610   Level: intermediate
8611 
8612   Note:
8613   This allows one to use either the restriction or interpolation (its transpose)
8614   matrix to do the interpolation
8615 
8616 .seealso: [](ch_matrices), `Mat`, `MatMultAdd()`, `MatMultTransposeAdd()`, `MatRestrict()`, `PCMG`
8617 @*/
8618 PetscErrorCode MatInterpolate(Mat A, Vec x, Vec y)
8619 {
8620   PetscInt M, N, Ny;
8621 
8622   PetscFunctionBegin;
8623   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
8624   PetscValidHeaderSpecific(x, VEC_CLASSID, 2);
8625   PetscValidHeaderSpecific(y, VEC_CLASSID, 3);
8626   PetscCall(MatGetSize(A, &M, &N));
8627   PetscCall(VecGetSize(y, &Ny));
8628   if (M == Ny) {
8629     PetscCall(MatMult(A, x, y));
8630   } else {
8631     PetscCall(MatMultTranspose(A, x, y));
8632   }
8633   PetscFunctionReturn(PETSC_SUCCESS);
8634 }
8635 
8636 /*@
8637   MatRestrict - $y = A*x$ or $A^T*x$
8638 
8639   Neighbor-wise Collective
8640 
8641   Input Parameters:
8642 + A - the matrix
8643 - x - the vector to be restricted
8644 
8645   Output Parameter:
8646 . y - the resulting vector
8647 
8648   Level: intermediate
8649 
8650   Note:
8651   This allows one to use either the restriction or interpolation (its transpose)
8652   matrix to do the restriction
8653 
8654 .seealso: [](ch_matrices), `Mat`, `MatMultAdd()`, `MatMultTransposeAdd()`, `MatInterpolate()`, `PCMG`
8655 @*/
8656 PetscErrorCode MatRestrict(Mat A, Vec x, Vec y)
8657 {
8658   PetscInt M, N, Ny;
8659 
8660   PetscFunctionBegin;
8661   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
8662   PetscValidHeaderSpecific(x, VEC_CLASSID, 2);
8663   PetscValidHeaderSpecific(y, VEC_CLASSID, 3);
8664   PetscCall(MatGetSize(A, &M, &N));
8665   PetscCall(VecGetSize(y, &Ny));
8666   if (M == Ny) {
8667     PetscCall(MatMult(A, x, y));
8668   } else {
8669     PetscCall(MatMultTranspose(A, x, y));
8670   }
8671   PetscFunctionReturn(PETSC_SUCCESS);
8672 }
8673 
8674 /*@
8675   MatMatInterpolateAdd - $Y = W + A*X$ or $W + A^T*X$ depending on the shape of `A`
8676 
8677   Neighbor-wise Collective
8678 
8679   Input Parameters:
8680 + A - the matrix
8681 . x - the input dense matrix to be multiplied
8682 - w - the input dense matrix to be added to the result
8683 
8684   Output Parameter:
8685 . y - the output dense matrix
8686 
8687   Level: intermediate
8688 
8689   Note:
8690   This allows one to use either the restriction or interpolation (its transpose)
8691   matrix to do the interpolation. `y` matrix can be reused if already created with the proper sizes,
8692   otherwise it will be recreated. `y` must be initialized to `NULL` if not supplied.
8693 
8694 .seealso: [](ch_matrices), `Mat`, `MatInterpolateAdd()`, `MatMatInterpolate()`, `MatMatRestrict()`, `PCMG`
8695 @*/
8696 PetscErrorCode MatMatInterpolateAdd(Mat A, Mat x, Mat w, Mat *y)
8697 {
8698   PetscInt  M, N, Mx, Nx, Mo, My = 0, Ny = 0;
8699   PetscBool trans = PETSC_TRUE;
8700   MatReuse  reuse = MAT_INITIAL_MATRIX;
8701 
8702   PetscFunctionBegin;
8703   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
8704   PetscValidHeaderSpecific(x, MAT_CLASSID, 2);
8705   PetscValidType(x, 2);
8706   if (w) PetscValidHeaderSpecific(w, MAT_CLASSID, 3);
8707   if (*y) PetscValidHeaderSpecific(*y, MAT_CLASSID, 4);
8708   PetscCall(MatGetSize(A, &M, &N));
8709   PetscCall(MatGetSize(x, &Mx, &Nx));
8710   if (N == Mx) trans = PETSC_FALSE;
8711   else PetscCheck(M == Mx, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Size mismatch: A %" PetscInt_FMT "x%" PetscInt_FMT ", X %" PetscInt_FMT "x%" PetscInt_FMT, M, N, Mx, Nx);
8712   Mo = trans ? N : M;
8713   if (*y) {
8714     PetscCall(MatGetSize(*y, &My, &Ny));
8715     if (Mo == My && Nx == Ny) {
8716       reuse = MAT_REUSE_MATRIX;
8717     } else {
8718       PetscCheck(w || *y != w, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Cannot reuse y and w, size mismatch: A %" PetscInt_FMT "x%" PetscInt_FMT ", X %" PetscInt_FMT "x%" PetscInt_FMT ", Y %" PetscInt_FMT "x%" PetscInt_FMT, M, N, Mx, Nx, My, Ny);
8719       PetscCall(MatDestroy(y));
8720     }
8721   }
8722 
8723   if (w && *y == w) { /* this is to minimize changes in PCMG */
8724     PetscBool flg;
8725 
8726     PetscCall(PetscObjectQuery((PetscObject)*y, "__MatMatIntAdd_w", (PetscObject *)&w));
8727     if (w) {
8728       PetscInt My, Ny, Mw, Nw;
8729 
8730       PetscCall(PetscObjectTypeCompare((PetscObject)*y, ((PetscObject)w)->type_name, &flg));
8731       PetscCall(MatGetSize(*y, &My, &Ny));
8732       PetscCall(MatGetSize(w, &Mw, &Nw));
8733       if (!flg || My != Mw || Ny != Nw) w = NULL;
8734     }
8735     if (!w) {
8736       PetscCall(MatDuplicate(*y, MAT_COPY_VALUES, &w));
8737       PetscCall(PetscObjectCompose((PetscObject)*y, "__MatMatIntAdd_w", (PetscObject)w));
8738       PetscCall(PetscObjectDereference((PetscObject)w));
8739     } else {
8740       PetscCall(MatCopy(*y, w, UNKNOWN_NONZERO_PATTERN));
8741     }
8742   }
8743   if (!trans) {
8744     PetscCall(MatMatMult(A, x, reuse, PETSC_DEFAULT, y));
8745   } else {
8746     PetscCall(MatTransposeMatMult(A, x, reuse, PETSC_DEFAULT, y));
8747   }
8748   if (w) PetscCall(MatAXPY(*y, 1.0, w, UNKNOWN_NONZERO_PATTERN));
8749   PetscFunctionReturn(PETSC_SUCCESS);
8750 }
8751 
8752 /*@
8753   MatMatInterpolate - $Y = A*X$ or $A^T*X$ depending on the shape of `A`
8754 
8755   Neighbor-wise Collective
8756 
8757   Input Parameters:
8758 + A - the matrix
8759 - x - the input dense matrix
8760 
8761   Output Parameter:
8762 . y - the output dense matrix
8763 
8764   Level: intermediate
8765 
8766   Note:
8767   This allows one to use either the restriction or interpolation (its transpose)
8768   matrix to do the interpolation. `y` matrix can be reused if already created with the proper sizes,
8769   otherwise it will be recreated. `y` must be initialized to `NULL` if not supplied.
8770 
8771 .seealso: [](ch_matrices), `Mat`, `MatInterpolate()`, `MatRestrict()`, `MatMatRestrict()`, `PCMG`
8772 @*/
8773 PetscErrorCode MatMatInterpolate(Mat A, Mat x, Mat *y)
8774 {
8775   PetscFunctionBegin;
8776   PetscCall(MatMatInterpolateAdd(A, x, NULL, y));
8777   PetscFunctionReturn(PETSC_SUCCESS);
8778 }
8779 
8780 /*@
8781   MatMatRestrict - $Y = A*X$ or $A^T*X$ depending on the shape of `A`
8782 
8783   Neighbor-wise Collective
8784 
8785   Input Parameters:
8786 + A - the matrix
8787 - x - the input dense matrix
8788 
8789   Output Parameter:
8790 . y - the output dense matrix
8791 
8792   Level: intermediate
8793 
8794   Note:
8795   This allows one to use either the restriction or interpolation (its transpose)
8796   matrix to do the restriction. `y` matrix can be reused if already created with the proper sizes,
8797   otherwise it will be recreated. `y` must be initialized to `NULL` if not supplied.
8798 
8799 .seealso: [](ch_matrices), `Mat`, `MatRestrict()`, `MatInterpolate()`, `MatMatInterpolate()`, `PCMG`
8800 @*/
8801 PetscErrorCode MatMatRestrict(Mat A, Mat x, Mat *y)
8802 {
8803   PetscFunctionBegin;
8804   PetscCall(MatMatInterpolateAdd(A, x, NULL, y));
8805   PetscFunctionReturn(PETSC_SUCCESS);
8806 }
8807 
8808 /*@
8809   MatGetNullSpace - retrieves the null space of a matrix.
8810 
8811   Logically Collective
8812 
8813   Input Parameters:
8814 + mat    - the matrix
8815 - nullsp - the null space object
8816 
8817   Level: developer
8818 
8819 .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatNullSpaceCreate()`, `MatSetNearNullSpace()`, `MatSetNullSpace()`, `MatNullSpace`
8820 @*/
8821 PetscErrorCode MatGetNullSpace(Mat mat, MatNullSpace *nullsp)
8822 {
8823   PetscFunctionBegin;
8824   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
8825   PetscAssertPointer(nullsp, 2);
8826   *nullsp = (mat->symmetric == PETSC_BOOL3_TRUE && !mat->nullsp) ? mat->transnullsp : mat->nullsp;
8827   PetscFunctionReturn(PETSC_SUCCESS);
8828 }
8829 
8830 /*@
8831   MatSetNullSpace - attaches a null space to a matrix.
8832 
8833   Logically Collective
8834 
8835   Input Parameters:
8836 + mat    - the matrix
8837 - nullsp - the null space object
8838 
8839   Level: advanced
8840 
8841   Notes:
8842   This null space is used by the `KSP` linear solvers to solve singular systems.
8843 
8844   Overwrites any previous null space that may have been attached. You can remove the null space from the matrix object by calling this routine with an nullsp of `NULL`
8845 
8846   For inconsistent singular systems (linear systems where the right hand side is not in the range of the operator) the `KSP` residuals will not converge to
8847   to zero but the linear system will still be solved in a least squares sense.
8848 
8849   The fundamental theorem of linear algebra (Gilbert Strang, Introduction to Applied Mathematics, page 72) states that
8850   the domain of a matrix A (from $R^n$ to $R^m$ (m rows, n columns) $R^n$ = the direct sum of the null space of A, n(A), + the range of $A^T$, $R(A^T)$.
8851   Similarly $R^m$ = direct sum n($A^T$) + R(A).  Hence the linear system $A x = b$ has a solution only if b in R(A) (or correspondingly b is orthogonal to
8852   n($A^T$)) and if x is a solution then x + alpha n(A) is a solution for any alpha. The minimum norm solution is orthogonal to n(A). For problems without a solution
8853   the solution that minimizes the norm of the residual (the least squares solution) can be obtained by solving A x = \hat{b} where \hat{b} is b orthogonalized to the n($A^T$).
8854   This  \hat{b} can be obtained by calling `MatNullSpaceRemove()` with the null space of the transpose of the matrix.
8855 
8856   If the matrix is known to be symmetric because it is an `MATSBAIJ` matrix or one as called
8857   `MatSetOption`(mat,`MAT_SYMMETRIC` or possibly `MAT_SYMMETRY_ETERNAL`,`PETSC_TRUE`); this
8858   routine also automatically calls `MatSetTransposeNullSpace()`.
8859 
8860   The user should call `MatNullSpaceDestroy()`.
8861 
8862 .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatNullSpaceCreate()`, `MatSetNearNullSpace()`, `MatGetNullSpace()`, `MatSetTransposeNullSpace()`, `MatGetTransposeNullSpace()`, `MatNullSpaceRemove()`,
8863           `KSPSetPCSide()`
8864 @*/
8865 PetscErrorCode MatSetNullSpace(Mat mat, MatNullSpace nullsp)
8866 {
8867   PetscFunctionBegin;
8868   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
8869   if (nullsp) PetscValidHeaderSpecific(nullsp, MAT_NULLSPACE_CLASSID, 2);
8870   if (nullsp) PetscCall(PetscObjectReference((PetscObject)nullsp));
8871   PetscCall(MatNullSpaceDestroy(&mat->nullsp));
8872   mat->nullsp = nullsp;
8873   if (mat->symmetric == PETSC_BOOL3_TRUE) PetscCall(MatSetTransposeNullSpace(mat, nullsp));
8874   PetscFunctionReturn(PETSC_SUCCESS);
8875 }
8876 
8877 /*@
8878   MatGetTransposeNullSpace - retrieves the null space of the transpose of a matrix.
8879 
8880   Logically Collective
8881 
8882   Input Parameters:
8883 + mat    - the matrix
8884 - nullsp - the null space object
8885 
8886   Level: developer
8887 
8888 .seealso: [](ch_matrices), `Mat`, `MatNullSpace`, `MatCreate()`, `MatNullSpaceCreate()`, `MatSetNearNullSpace()`, `MatSetTransposeNullSpace()`, `MatSetNullSpace()`, `MatGetNullSpace()`
8889 @*/
8890 PetscErrorCode MatGetTransposeNullSpace(Mat mat, MatNullSpace *nullsp)
8891 {
8892   PetscFunctionBegin;
8893   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
8894   PetscValidType(mat, 1);
8895   PetscAssertPointer(nullsp, 2);
8896   *nullsp = (mat->symmetric == PETSC_BOOL3_TRUE && !mat->transnullsp) ? mat->nullsp : mat->transnullsp;
8897   PetscFunctionReturn(PETSC_SUCCESS);
8898 }
8899 
8900 /*@
8901   MatSetTransposeNullSpace - attaches the null space of a transpose of a matrix to the matrix
8902 
8903   Logically Collective
8904 
8905   Input Parameters:
8906 + mat    - the matrix
8907 - nullsp - the null space object
8908 
8909   Level: advanced
8910 
8911   Notes:
8912   This allows solving singular linear systems defined by the transpose of the matrix using `KSP` solvers with left preconditioning.
8913 
8914   See `MatSetNullSpace()`
8915 
8916 .seealso: [](ch_matrices), `Mat`, `MatNullSpace`, `MatCreate()`, `MatNullSpaceCreate()`, `MatSetNearNullSpace()`, `MatGetNullSpace()`, `MatSetNullSpace()`, `MatGetTransposeNullSpace()`, `MatNullSpaceRemove()`, `KSPSetPCSide()`
8917 @*/
8918 PetscErrorCode MatSetTransposeNullSpace(Mat mat, MatNullSpace nullsp)
8919 {
8920   PetscFunctionBegin;
8921   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
8922   if (nullsp) PetscValidHeaderSpecific(nullsp, MAT_NULLSPACE_CLASSID, 2);
8923   if (nullsp) PetscCall(PetscObjectReference((PetscObject)nullsp));
8924   PetscCall(MatNullSpaceDestroy(&mat->transnullsp));
8925   mat->transnullsp = nullsp;
8926   PetscFunctionReturn(PETSC_SUCCESS);
8927 }
8928 
8929 /*@
8930   MatSetNearNullSpace - attaches a null space to a matrix, which is often the null space (rigid body modes) of the operator without boundary conditions
8931   This null space will be used to provide near null space vectors to a multigrid preconditioner built from this matrix.
8932 
8933   Logically Collective
8934 
8935   Input Parameters:
8936 + mat    - the matrix
8937 - nullsp - the null space object
8938 
8939   Level: advanced
8940 
8941   Notes:
8942   Overwrites any previous near null space that may have been attached
8943 
8944   You can remove the null space by calling this routine with an `nullsp` of `NULL`
8945 
8946 .seealso: [](ch_matrices), `Mat`, `MatNullSpace`, `MatCreate()`, `MatNullSpaceCreate()`, `MatSetNullSpace()`, `MatNullSpaceCreateRigidBody()`, `MatGetNearNullSpace()`
8947 @*/
8948 PetscErrorCode MatSetNearNullSpace(Mat mat, MatNullSpace nullsp)
8949 {
8950   PetscFunctionBegin;
8951   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
8952   PetscValidType(mat, 1);
8953   if (nullsp) PetscValidHeaderSpecific(nullsp, MAT_NULLSPACE_CLASSID, 2);
8954   MatCheckPreallocated(mat, 1);
8955   if (nullsp) PetscCall(PetscObjectReference((PetscObject)nullsp));
8956   PetscCall(MatNullSpaceDestroy(&mat->nearnullsp));
8957   mat->nearnullsp = nullsp;
8958   PetscFunctionReturn(PETSC_SUCCESS);
8959 }
8960 
8961 /*@
8962   MatGetNearNullSpace - Get null space attached with `MatSetNearNullSpace()`
8963 
8964   Not Collective
8965 
8966   Input Parameter:
8967 . mat - the matrix
8968 
8969   Output Parameter:
8970 . nullsp - the null space object, `NULL` if not set
8971 
8972   Level: advanced
8973 
8974 .seealso: [](ch_matrices), `Mat`, `MatNullSpace`, `MatSetNearNullSpace()`, `MatGetNullSpace()`, `MatNullSpaceCreate()`
8975 @*/
8976 PetscErrorCode MatGetNearNullSpace(Mat mat, MatNullSpace *nullsp)
8977 {
8978   PetscFunctionBegin;
8979   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
8980   PetscValidType(mat, 1);
8981   PetscAssertPointer(nullsp, 2);
8982   MatCheckPreallocated(mat, 1);
8983   *nullsp = mat->nearnullsp;
8984   PetscFunctionReturn(PETSC_SUCCESS);
8985 }
8986 
8987 /*@C
8988   MatICCFactor - Performs in-place incomplete Cholesky factorization of matrix.
8989 
8990   Collective
8991 
8992   Input Parameters:
8993 + mat  - the matrix
8994 . row  - row/column permutation
8995 - info - information on desired factorization process
8996 
8997   Level: developer
8998 
8999   Notes:
9000   Probably really in-place only when level of fill is zero, otherwise allocates
9001   new space to store factored matrix and deletes previous memory.
9002 
9003   Most users should employ the `KSP` interface for linear solvers
9004   instead of working directly with matrix algebra routines such as this.
9005   See, e.g., `KSPCreate()`.
9006 
9007   Developer Note:
9008   The Fortran interface is not autogenerated as the
9009   interface definition cannot be generated correctly [due to `MatFactorInfo`]
9010 
9011 .seealso: [](ch_matrices), `Mat`, `MatFactorInfo`, `MatGetFactor()`, `MatICCFactorSymbolic()`, `MatLUFactorNumeric()`, `MatCholeskyFactor()`
9012 @*/
9013 PetscErrorCode MatICCFactor(Mat mat, IS row, const MatFactorInfo *info)
9014 {
9015   PetscFunctionBegin;
9016   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
9017   PetscValidType(mat, 1);
9018   if (row) PetscValidHeaderSpecific(row, IS_CLASSID, 2);
9019   PetscAssertPointer(info, 3);
9020   PetscCheck(mat->rmap->N == mat->cmap->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONG, "matrix must be square");
9021   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
9022   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
9023   MatCheckPreallocated(mat, 1);
9024   PetscUseTypeMethod(mat, iccfactor, row, info);
9025   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
9026   PetscFunctionReturn(PETSC_SUCCESS);
9027 }
9028 
9029 /*@
9030   MatDiagonalScaleLocal - Scales columns of a matrix given the scaling values including the
9031   ghosted ones.
9032 
9033   Not Collective
9034 
9035   Input Parameters:
9036 + mat  - the matrix
9037 - diag - the diagonal values, including ghost ones
9038 
9039   Level: developer
9040 
9041   Notes:
9042   Works only for `MATMPIAIJ` and `MATMPIBAIJ` matrices
9043 
9044   This allows one to avoid during communication to perform the scaling that must be done with `MatDiagonalScale()`
9045 
9046 .seealso: [](ch_matrices), `Mat`, `MatDiagonalScale()`
9047 @*/
9048 PetscErrorCode MatDiagonalScaleLocal(Mat mat, Vec diag)
9049 {
9050   PetscMPIInt size;
9051 
9052   PetscFunctionBegin;
9053   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
9054   PetscValidHeaderSpecific(diag, VEC_CLASSID, 2);
9055   PetscValidType(mat, 1);
9056 
9057   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Matrix must be already assembled");
9058   PetscCall(PetscLogEventBegin(MAT_Scale, mat, 0, 0, 0));
9059   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)mat), &size));
9060   if (size == 1) {
9061     PetscInt n, m;
9062     PetscCall(VecGetSize(diag, &n));
9063     PetscCall(MatGetSize(mat, NULL, &m));
9064     PetscCheck(m == n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only supported for sequential matrices when no ghost points/periodic conditions");
9065     PetscCall(MatDiagonalScale(mat, NULL, diag));
9066   } else {
9067     PetscUseMethod(mat, "MatDiagonalScaleLocal_C", (Mat, Vec), (mat, diag));
9068   }
9069   PetscCall(PetscLogEventEnd(MAT_Scale, mat, 0, 0, 0));
9070   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
9071   PetscFunctionReturn(PETSC_SUCCESS);
9072 }
9073 
9074 /*@
9075   MatGetInertia - Gets the inertia from a factored matrix
9076 
9077   Collective
9078 
9079   Input Parameter:
9080 . mat - the matrix
9081 
9082   Output Parameters:
9083 + nneg  - number of negative eigenvalues
9084 . nzero - number of zero eigenvalues
9085 - npos  - number of positive eigenvalues
9086 
9087   Level: advanced
9088 
9089   Note:
9090   Matrix must have been factored by `MatCholeskyFactor()`
9091 
9092 .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatCholeskyFactor()`
9093 @*/
9094 PetscErrorCode MatGetInertia(Mat mat, PetscInt *nneg, PetscInt *nzero, PetscInt *npos)
9095 {
9096   PetscFunctionBegin;
9097   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
9098   PetscValidType(mat, 1);
9099   PetscCheck(mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Unfactored matrix");
9100   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Numeric factor mat is not assembled");
9101   PetscUseTypeMethod(mat, getinertia, nneg, nzero, npos);
9102   PetscFunctionReturn(PETSC_SUCCESS);
9103 }
9104 
9105 /*@C
9106   MatSolves - Solves $A x = b$, given a factored matrix, for a collection of vectors
9107 
9108   Neighbor-wise Collective
9109 
9110   Input Parameters:
9111 + mat - the factored matrix obtained with `MatGetFactor()`
9112 - b   - the right-hand-side vectors
9113 
9114   Output Parameter:
9115 . x - the result vectors
9116 
9117   Level: developer
9118 
9119   Note:
9120   The vectors `b` and `x` cannot be the same.  I.e., one cannot
9121   call `MatSolves`(A,x,x).
9122 
9123 .seealso: [](ch_matrices), `Mat`, `Vecs`, `MatSolveAdd()`, `MatSolveTranspose()`, `MatSolveTransposeAdd()`, `MatSolve()`
9124 @*/
9125 PetscErrorCode MatSolves(Mat mat, Vecs b, Vecs x)
9126 {
9127   PetscFunctionBegin;
9128   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
9129   PetscValidType(mat, 1);
9130   PetscCheck(x != b, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_IDN, "x and b must be different vectors");
9131   PetscCheck(mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Unfactored matrix");
9132   if (!mat->rmap->N && !mat->cmap->N) PetscFunctionReturn(PETSC_SUCCESS);
9133 
9134   MatCheckPreallocated(mat, 1);
9135   PetscCall(PetscLogEventBegin(MAT_Solves, mat, 0, 0, 0));
9136   PetscUseTypeMethod(mat, solves, b, x);
9137   PetscCall(PetscLogEventEnd(MAT_Solves, mat, 0, 0, 0));
9138   PetscFunctionReturn(PETSC_SUCCESS);
9139 }
9140 
9141 /*@
9142   MatIsSymmetric - Test whether a matrix is symmetric
9143 
9144   Collective
9145 
9146   Input Parameters:
9147 + A   - the matrix to test
9148 - tol - difference between value and its transpose less than this amount counts as equal (use 0.0 for exact transpose)
9149 
9150   Output Parameter:
9151 . flg - the result
9152 
9153   Level: intermediate
9154 
9155   Notes:
9156   For real numbers `MatIsSymmetric()` and `MatIsHermitian()` return identical results
9157 
9158   If the matrix does not yet know if it is symmetric or not this can be an expensive operation, also available `MatIsSymmetricKnown()`
9159 
9160   One can declare that a matrix is symmetric with `MatSetOption`(mat,`MAT_SYMMETRIC`,`PETSC_TRUE`) and if it is known to remain symmetric
9161   after changes to the matrices values one can call `MatSetOption`(mat,`MAT_SYMMETRY_ETERNAL`,`PETSC_TRUE`)
9162 
9163 .seealso: [](ch_matrices), `Mat`, `MatTranspose()`, `MatIsTranspose()`, `MatIsHermitian()`, `MatIsStructurallySymmetric()`, `MatSetOption()`, `MatIsSymmetricKnown()`,
9164           `MAT_SYMMETRIC`, `MAT_SYMMETRY_ETERNAL`
9165 @*/
9166 PetscErrorCode MatIsSymmetric(Mat A, PetscReal tol, PetscBool *flg)
9167 {
9168   PetscFunctionBegin;
9169   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
9170   PetscAssertPointer(flg, 3);
9171 
9172   if (A->symmetric == PETSC_BOOL3_TRUE) *flg = PETSC_TRUE;
9173   else if (A->symmetric == PETSC_BOOL3_FALSE) *flg = PETSC_FALSE;
9174   else {
9175     PetscUseTypeMethod(A, issymmetric, tol, flg);
9176     if (!tol) PetscCall(MatSetOption(A, MAT_SYMMETRIC, *flg));
9177   }
9178   PetscFunctionReturn(PETSC_SUCCESS);
9179 }
9180 
9181 /*@
9182   MatIsHermitian - Test whether a matrix is Hermitian
9183 
9184   Collective
9185 
9186   Input Parameters:
9187 + A   - the matrix to test
9188 - tol - difference between value and its transpose less than this amount counts as equal (use 0.0 for exact Hermitian)
9189 
9190   Output Parameter:
9191 . flg - the result
9192 
9193   Level: intermediate
9194 
9195   Notes:
9196   For real numbers `MatIsSymmetric()` and `MatIsHermitian()` return identical results
9197 
9198   If the matrix does not yet know if it is Hermitian or not this can be an expensive operation, also available `MatIsHermitianKnown()`
9199 
9200   One can declare that a matrix is Hermitian with `MatSetOption`(mat,`MAT_HERMITIAN`,`PETSC_TRUE`) and if it is known to remain Hermitian
9201   after changes to the matrices values one can call `MatSetOption`(mat,`MAT_SYMEMTRY_ETERNAL`,`PETSC_TRUE`)
9202 
9203 .seealso: [](ch_matrices), `Mat`, `MatTranspose()`, `MatIsTranspose()`, `MatIsHermitianKnown()`, `MatIsStructurallySymmetric()`, `MatSetOption()`,
9204           `MatIsSymmetricKnown()`, `MatIsSymmetric()`, `MAT_HERMITIAN`, `MAT_SYMMETRY_ETERNAL`
9205 @*/
9206 PetscErrorCode MatIsHermitian(Mat A, PetscReal tol, PetscBool *flg)
9207 {
9208   PetscFunctionBegin;
9209   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
9210   PetscAssertPointer(flg, 3);
9211 
9212   if (A->hermitian == PETSC_BOOL3_TRUE) *flg = PETSC_TRUE;
9213   else if (A->hermitian == PETSC_BOOL3_FALSE) *flg = PETSC_FALSE;
9214   else {
9215     PetscUseTypeMethod(A, ishermitian, tol, flg);
9216     if (!tol) PetscCall(MatSetOption(A, MAT_HERMITIAN, *flg));
9217   }
9218   PetscFunctionReturn(PETSC_SUCCESS);
9219 }
9220 
9221 /*@
9222   MatIsSymmetricKnown - Checks if a matrix knows if it is symmetric or not and its symmetric state
9223 
9224   Not Collective
9225 
9226   Input Parameter:
9227 . A - the matrix to check
9228 
9229   Output Parameters:
9230 + set - `PETSC_TRUE` if the matrix knows its symmetry state (this tells you if the next flag is valid)
9231 - flg - the result (only valid if set is `PETSC_TRUE`)
9232 
9233   Level: advanced
9234 
9235   Notes:
9236   Does not check the matrix values directly, so this may return unknown (set = `PETSC_FALSE`). Use `MatIsSymmetric()`
9237   if you want it explicitly checked
9238 
9239   One can declare that a matrix is symmetric with `MatSetOption`(mat,`MAT_SYMMETRIC`,`PETSC_TRUE`) and if it is known to remain symmetric
9240   after changes to the matrices values one can call `MatSetOption`(mat,`MAT_SYMMETRY_ETERNAL`,`PETSC_TRUE`)
9241 
9242 .seealso: [](ch_matrices), `Mat`, `MAT_SYMMETRY_ETERNAL`, `MatTranspose()`, `MatIsTranspose()`, `MatIsHermitian()`, `MatIsStructurallySymmetric()`, `MatSetOption()`, `MatIsSymmetric()`, `MatIsHermitianKnown()`
9243 @*/
9244 PetscErrorCode MatIsSymmetricKnown(Mat A, PetscBool *set, PetscBool *flg)
9245 {
9246   PetscFunctionBegin;
9247   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
9248   PetscAssertPointer(set, 2);
9249   PetscAssertPointer(flg, 3);
9250   if (A->symmetric != PETSC_BOOL3_UNKNOWN) {
9251     *set = PETSC_TRUE;
9252     *flg = PetscBool3ToBool(A->symmetric);
9253   } else {
9254     *set = PETSC_FALSE;
9255   }
9256   PetscFunctionReturn(PETSC_SUCCESS);
9257 }
9258 
9259 /*@
9260   MatIsSPDKnown - Checks if a matrix knows if it is symmetric positive definite or not and its symmetric positive definite state
9261 
9262   Not Collective
9263 
9264   Input Parameter:
9265 . A - the matrix to check
9266 
9267   Output Parameters:
9268 + set - `PETSC_TRUE` if the matrix knows its symmetric positive definite state (this tells you if the next flag is valid)
9269 - flg - the result (only valid if set is `PETSC_TRUE`)
9270 
9271   Level: advanced
9272 
9273   Notes:
9274   Does not check the matrix values directly, so this may return unknown (set = `PETSC_FALSE`).
9275 
9276   One can declare that a matrix is SPD with `MatSetOption`(mat,`MAT_SPD`,`PETSC_TRUE`) and if it is known to remain SPD
9277   after changes to the matrices values one can call `MatSetOption`(mat,`MAT_SPD_ETERNAL`,`PETSC_TRUE`)
9278 
9279 .seealso: [](ch_matrices), `Mat`, `MAT_SPD_ETERNAL`, `MAT_SPD`, `MatTranspose()`, `MatIsTranspose()`, `MatIsHermitian()`, `MatIsStructurallySymmetric()`, `MatSetOption()`, `MatIsSymmetric()`, `MatIsHermitianKnown()`
9280 @*/
9281 PetscErrorCode MatIsSPDKnown(Mat A, PetscBool *set, PetscBool *flg)
9282 {
9283   PetscFunctionBegin;
9284   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
9285   PetscAssertPointer(set, 2);
9286   PetscAssertPointer(flg, 3);
9287   if (A->spd != PETSC_BOOL3_UNKNOWN) {
9288     *set = PETSC_TRUE;
9289     *flg = PetscBool3ToBool(A->spd);
9290   } else {
9291     *set = PETSC_FALSE;
9292   }
9293   PetscFunctionReturn(PETSC_SUCCESS);
9294 }
9295 
9296 /*@
9297   MatIsHermitianKnown - Checks if a matrix knows if it is Hermitian or not and its Hermitian state
9298 
9299   Not Collective
9300 
9301   Input Parameter:
9302 . A - the matrix to check
9303 
9304   Output Parameters:
9305 + set - `PETSC_TRUE` if the matrix knows its Hermitian state (this tells you if the next flag is valid)
9306 - flg - the result (only valid if set is `PETSC_TRUE`)
9307 
9308   Level: advanced
9309 
9310   Notes:
9311   Does not check the matrix values directly, so this may return unknown (set = `PETSC_FALSE`). Use `MatIsHermitian()`
9312   if you want it explicitly checked
9313 
9314   One can declare that a matrix is Hermitian with `MatSetOption`(mat,`MAT_HERMITIAN`,`PETSC_TRUE`) and if it is known to remain Hermitian
9315   after changes to the matrices values one can call `MatSetOption`(mat,`MAT_SYMMETRY_ETERNAL`,`PETSC_TRUE`)
9316 
9317 .seealso: [](ch_matrices), `Mat`, `MAT_SYMMETRY_ETERNAL`, `MAT_HERMITIAN`, `MatTranspose()`, `MatIsTranspose()`, `MatIsHermitian()`, `MatIsStructurallySymmetric()`, `MatSetOption()`, `MatIsSymmetric()`
9318 @*/
9319 PetscErrorCode MatIsHermitianKnown(Mat A, PetscBool *set, PetscBool *flg)
9320 {
9321   PetscFunctionBegin;
9322   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
9323   PetscAssertPointer(set, 2);
9324   PetscAssertPointer(flg, 3);
9325   if (A->hermitian != PETSC_BOOL3_UNKNOWN) {
9326     *set = PETSC_TRUE;
9327     *flg = PetscBool3ToBool(A->hermitian);
9328   } else {
9329     *set = PETSC_FALSE;
9330   }
9331   PetscFunctionReturn(PETSC_SUCCESS);
9332 }
9333 
9334 /*@
9335   MatIsStructurallySymmetric - Test whether a matrix is structurally symmetric
9336 
9337   Collective
9338 
9339   Input Parameter:
9340 . A - the matrix to test
9341 
9342   Output Parameter:
9343 . flg - the result
9344 
9345   Level: intermediate
9346 
9347   Notes:
9348   If the matrix does yet know it is structurally symmetric this can be an expensive operation, also available `MatIsStructurallySymmetricKnown()`
9349 
9350   One can declare that a matrix is structurally symmetric with `MatSetOption`(mat,`MAT_STRUCTURALLY_SYMMETRIC`,`PETSC_TRUE`) and if it is known to remain structurally
9351   symmetric after changes to the matrices values one can call `MatSetOption`(mat,`MAT_STRUCTURAL_SYMMETRY_ETERNAL`,`PETSC_TRUE`)
9352 
9353 .seealso: [](ch_matrices), `Mat`, `MAT_STRUCTURALLY_SYMMETRIC`, `MAT_STRUCTURAL_SYMMETRY_ETERNAL`, `MatTranspose()`, `MatIsTranspose()`, `MatIsHermitian()`, `MatIsSymmetric()`, `MatSetOption()`, `MatIsStructurallySymmetricKnown()`
9354 @*/
9355 PetscErrorCode MatIsStructurallySymmetric(Mat A, PetscBool *flg)
9356 {
9357   PetscFunctionBegin;
9358   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
9359   PetscAssertPointer(flg, 2);
9360   if (A->structurally_symmetric != PETSC_BOOL3_UNKNOWN) {
9361     *flg = PetscBool3ToBool(A->structurally_symmetric);
9362   } else {
9363     PetscUseTypeMethod(A, isstructurallysymmetric, flg);
9364     PetscCall(MatSetOption(A, MAT_STRUCTURALLY_SYMMETRIC, *flg));
9365   }
9366   PetscFunctionReturn(PETSC_SUCCESS);
9367 }
9368 
9369 /*@
9370   MatIsStructurallySymmetricKnown - Checks if a matrix knows if it is structurally symmetric or not and its structurally symmetric state
9371 
9372   Not Collective
9373 
9374   Input Parameter:
9375 . A - the matrix to check
9376 
9377   Output Parameters:
9378 + set - PETSC_TRUE if the matrix knows its structurally symmetric state (this tells you if the next flag is valid)
9379 - flg - the result (only valid if set is PETSC_TRUE)
9380 
9381   Level: advanced
9382 
9383   Notes:
9384   One can declare that a matrix is structurally symmetric with `MatSetOption`(mat,`MAT_STRUCTURALLY_SYMMETRIC`,`PETSC_TRUE`) and if it is known to remain structurally
9385   symmetric after changes to the matrices values one can call `MatSetOption`(mat,`MAT_STRUCTURAL_SYMMETRY_ETERNAL`,`PETSC_TRUE`)
9386 
9387   Use `MatIsStructurallySymmetric()` to explicitly check if a matrix is structurally symmetric (this is an expensive operation)
9388 
9389 .seealso: [](ch_matrices), `Mat`, `MAT_STRUCTURALLY_SYMMETRIC`, `MatTranspose()`, `MatIsTranspose()`, `MatIsHermitian()`, `MatIsStructurallySymmetric()`, `MatSetOption()`, `MatIsSymmetric()`, `MatIsHermitianKnown()`
9390 @*/
9391 PetscErrorCode MatIsStructurallySymmetricKnown(Mat A, PetscBool *set, PetscBool *flg)
9392 {
9393   PetscFunctionBegin;
9394   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
9395   PetscAssertPointer(set, 2);
9396   PetscAssertPointer(flg, 3);
9397   if (A->structurally_symmetric != PETSC_BOOL3_UNKNOWN) {
9398     *set = PETSC_TRUE;
9399     *flg = PetscBool3ToBool(A->structurally_symmetric);
9400   } else {
9401     *set = PETSC_FALSE;
9402   }
9403   PetscFunctionReturn(PETSC_SUCCESS);
9404 }
9405 
9406 /*@
9407   MatStashGetInfo - Gets how many values are currently in the matrix stash, i.e. need
9408   to be communicated to other processors during the `MatAssemblyBegin()`/`MatAssemblyEnd()` process
9409 
9410   Not Collective
9411 
9412   Input Parameter:
9413 . mat - the matrix
9414 
9415   Output Parameters:
9416 + nstash    - the size of the stash
9417 . reallocs  - the number of additional mallocs incurred.
9418 . bnstash   - the size of the block stash
9419 - breallocs - the number of additional mallocs incurred.in the block stash
9420 
9421   Level: advanced
9422 
9423 .seealso: [](ch_matrices), `MatAssemblyBegin()`, `MatAssemblyEnd()`, `Mat`, `MatStashSetInitialSize()`
9424 @*/
9425 PetscErrorCode MatStashGetInfo(Mat mat, PetscInt *nstash, PetscInt *reallocs, PetscInt *bnstash, PetscInt *breallocs)
9426 {
9427   PetscFunctionBegin;
9428   PetscCall(MatStashGetInfo_Private(&mat->stash, nstash, reallocs));
9429   PetscCall(MatStashGetInfo_Private(&mat->bstash, bnstash, breallocs));
9430   PetscFunctionReturn(PETSC_SUCCESS);
9431 }
9432 
9433 /*@C
9434   MatCreateVecs - Get vector(s) compatible with the matrix, i.e. with the same
9435   parallel layout, `PetscLayout` for rows and columns
9436 
9437   Collective
9438 
9439   Input Parameter:
9440 . mat - the matrix
9441 
9442   Output Parameters:
9443 + right - (optional) vector that the matrix can be multiplied against
9444 - left  - (optional) vector that the matrix vector product can be stored in
9445 
9446   Level: advanced
9447 
9448   Notes:
9449   The blocksize of the returned vectors is determined by the row and column block sizes set with `MatSetBlockSizes()` or the single blocksize (same for both) set by `MatSetBlockSize()`.
9450 
9451   These are new vectors which are not owned by the mat, they should be destroyed in `VecDestroy()` when no longer needed
9452 
9453 .seealso: [](ch_matrices), `Mat`, `Vec`, `VecCreate()`, `VecDestroy()`, `DMCreateGlobalVector()`
9454 @*/
9455 PetscErrorCode MatCreateVecs(Mat mat, Vec *right, Vec *left)
9456 {
9457   PetscFunctionBegin;
9458   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
9459   PetscValidType(mat, 1);
9460   if (mat->ops->getvecs) {
9461     PetscUseTypeMethod(mat, getvecs, right, left);
9462   } else {
9463     if (right) {
9464       PetscCheck(mat->cmap->n >= 0, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "PetscLayout for columns not yet setup");
9465       PetscCall(VecCreateWithLayout_Private(mat->cmap, right));
9466       PetscCall(VecSetType(*right, mat->defaultvectype));
9467 #if defined(PETSC_HAVE_VIENNACL) || defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP)
9468       if (mat->boundtocpu && mat->bindingpropagates) {
9469         PetscCall(VecSetBindingPropagates(*right, PETSC_TRUE));
9470         PetscCall(VecBindToCPU(*right, PETSC_TRUE));
9471       }
9472 #endif
9473     }
9474     if (left) {
9475       PetscCheck(mat->rmap->n >= 0, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "PetscLayout for rows not yet setup");
9476       PetscCall(VecCreateWithLayout_Private(mat->rmap, left));
9477       PetscCall(VecSetType(*left, mat->defaultvectype));
9478 #if defined(PETSC_HAVE_VIENNACL) || defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP)
9479       if (mat->boundtocpu && mat->bindingpropagates) {
9480         PetscCall(VecSetBindingPropagates(*left, PETSC_TRUE));
9481         PetscCall(VecBindToCPU(*left, PETSC_TRUE));
9482       }
9483 #endif
9484     }
9485   }
9486   PetscFunctionReturn(PETSC_SUCCESS);
9487 }
9488 
9489 /*@C
9490   MatFactorInfoInitialize - Initializes a `MatFactorInfo` data structure
9491   with default values.
9492 
9493   Not Collective
9494 
9495   Input Parameter:
9496 . info - the `MatFactorInfo` data structure
9497 
9498   Level: developer
9499 
9500   Notes:
9501   The solvers are generally used through the `KSP` and `PC` objects, for example
9502   `PCLU`, `PCILU`, `PCCHOLESKY`, `PCICC`
9503 
9504   Once the data structure is initialized one may change certain entries as desired for the particular factorization to be performed
9505 
9506   Developer Note:
9507   The Fortran interface is not autogenerated as the
9508   interface definition cannot be generated correctly [due to `MatFactorInfo`]
9509 
9510 .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorInfo`
9511 @*/
9512 PetscErrorCode MatFactorInfoInitialize(MatFactorInfo *info)
9513 {
9514   PetscFunctionBegin;
9515   PetscCall(PetscMemzero(info, sizeof(MatFactorInfo)));
9516   PetscFunctionReturn(PETSC_SUCCESS);
9517 }
9518 
9519 /*@
9520   MatFactorSetSchurIS - Set indices corresponding to the Schur complement you wish to have computed
9521 
9522   Collective
9523 
9524   Input Parameters:
9525 + mat - the factored matrix
9526 - is  - the index set defining the Schur indices (0-based)
9527 
9528   Level: advanced
9529 
9530   Notes:
9531   Call `MatFactorSolveSchurComplement()` or `MatFactorSolveSchurComplementTranspose()` after this call to solve a Schur complement system.
9532 
9533   You can call `MatFactorGetSchurComplement()` or `MatFactorCreateSchurComplement()` after this call.
9534 
9535   This functionality is only supported for `MATSOLVERMUMPS` and `MATSOLVERMKL_PARDISO`
9536 
9537 .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorGetSchurComplement()`, `MatFactorRestoreSchurComplement()`, `MatFactorCreateSchurComplement()`, `MatFactorSolveSchurComplement()`,
9538           `MatFactorSolveSchurComplementTranspose()`, `MATSOLVERMUMPS`, `MATSOLVERMKL_PARDISO`
9539 @*/
9540 PetscErrorCode MatFactorSetSchurIS(Mat mat, IS is)
9541 {
9542   PetscErrorCode (*f)(Mat, IS);
9543 
9544   PetscFunctionBegin;
9545   PetscValidType(mat, 1);
9546   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
9547   PetscValidType(is, 2);
9548   PetscValidHeaderSpecific(is, IS_CLASSID, 2);
9549   PetscCheckSameComm(mat, 1, is, 2);
9550   PetscCheck(mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Only for factored matrix");
9551   PetscCall(PetscObjectQueryFunction((PetscObject)mat, "MatFactorSetSchurIS_C", &f));
9552   PetscCheck(f, PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "The selected MatSolverType does not support Schur complement computation. You should use MATSOLVERMUMPS or MATSOLVERMKL_PARDISO");
9553   PetscCall(MatDestroy(&mat->schur));
9554   PetscCall((*f)(mat, is));
9555   PetscCheck(mat->schur, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Schur complement has not been created");
9556   PetscFunctionReturn(PETSC_SUCCESS);
9557 }
9558 
9559 /*@
9560   MatFactorCreateSchurComplement - Create a Schur complement matrix object using Schur data computed during the factorization step
9561 
9562   Logically Collective
9563 
9564   Input Parameters:
9565 + F      - the factored matrix obtained by calling `MatGetFactor()`
9566 . S      - location where to return the Schur complement, can be `NULL`
9567 - status - the status of the Schur complement matrix, can be `NULL`
9568 
9569   Level: advanced
9570 
9571   Notes:
9572   You must call `MatFactorSetSchurIS()` before calling this routine.
9573 
9574   This functionality is only supported for `MATSOLVERMUMPS` and `MATSOLVERMKL_PARDISO`
9575 
9576   The routine provides a copy of the Schur matrix stored within the solver data structures.
9577   The caller must destroy the object when it is no longer needed.
9578   If `MatFactorInvertSchurComplement()` has been called, the routine gets back the inverse.
9579 
9580   Use `MatFactorGetSchurComplement()` to get access to the Schur complement matrix inside the factored matrix instead of making a copy of it (which this function does)
9581 
9582   See `MatCreateSchurComplement()` or `MatGetSchurComplement()` for ways to create virtual or approximate Schur complements.
9583 
9584   Developer Note:
9585   The reason this routine exists is because the representation of the Schur complement within the factor matrix may be different than a standard PETSc
9586   matrix representation and we normally do not want to use the time or memory to make a copy as a regular PETSc matrix.
9587 
9588 .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorSetSchurIS()`, `MatFactorGetSchurComplement()`, `MatFactorSchurStatus`, `MATSOLVERMUMPS`, `MATSOLVERMKL_PARDISO`
9589 @*/
9590 PetscErrorCode MatFactorCreateSchurComplement(Mat F, Mat *S, MatFactorSchurStatus *status)
9591 {
9592   PetscFunctionBegin;
9593   PetscValidHeaderSpecific(F, MAT_CLASSID, 1);
9594   if (S) PetscAssertPointer(S, 2);
9595   if (status) PetscAssertPointer(status, 3);
9596   if (S) {
9597     PetscErrorCode (*f)(Mat, Mat *);
9598 
9599     PetscCall(PetscObjectQueryFunction((PetscObject)F, "MatFactorCreateSchurComplement_C", &f));
9600     if (f) {
9601       PetscCall((*f)(F, S));
9602     } else {
9603       PetscCall(MatDuplicate(F->schur, MAT_COPY_VALUES, S));
9604     }
9605   }
9606   if (status) *status = F->schur_status;
9607   PetscFunctionReturn(PETSC_SUCCESS);
9608 }
9609 
9610 /*@
9611   MatFactorGetSchurComplement - Gets access to a Schur complement matrix using the current Schur data within a factored matrix
9612 
9613   Logically Collective
9614 
9615   Input Parameters:
9616 + F      - the factored matrix obtained by calling `MatGetFactor()`
9617 . S      - location where to return the Schur complement, can be `NULL`
9618 - status - the status of the Schur complement matrix, can be `NULL`
9619 
9620   Level: advanced
9621 
9622   Notes:
9623   You must call `MatFactorSetSchurIS()` before calling this routine.
9624 
9625   Schur complement mode is currently implemented for sequential matrices with factor type of `MATSOLVERMUMPS`
9626 
9627   The routine returns a the Schur Complement stored within the data structures of the solver.
9628 
9629   If `MatFactorInvertSchurComplement()` has previously been called, the returned matrix is actually the inverse of the Schur complement.
9630 
9631   The returned matrix should not be destroyed; the caller should call `MatFactorRestoreSchurComplement()` when the object is no longer needed.
9632 
9633   Use `MatFactorCreateSchurComplement()` to create a copy of the Schur complement matrix that is within a factored matrix
9634 
9635   See `MatCreateSchurComplement()` or `MatGetSchurComplement()` for ways to create virtual or approximate Schur complements.
9636 
9637 .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorSetSchurIS()`, `MatFactorRestoreSchurComplement()`, `MatFactorCreateSchurComplement()`, `MatFactorSchurStatus`
9638 @*/
9639 PetscErrorCode MatFactorGetSchurComplement(Mat F, Mat *S, MatFactorSchurStatus *status)
9640 {
9641   PetscFunctionBegin;
9642   PetscValidHeaderSpecific(F, MAT_CLASSID, 1);
9643   if (S) {
9644     PetscAssertPointer(S, 2);
9645     *S = F->schur;
9646   }
9647   if (status) {
9648     PetscAssertPointer(status, 3);
9649     *status = F->schur_status;
9650   }
9651   PetscFunctionReturn(PETSC_SUCCESS);
9652 }
9653 
9654 static PetscErrorCode MatFactorUpdateSchurStatus_Private(Mat F)
9655 {
9656   Mat S = F->schur;
9657 
9658   PetscFunctionBegin;
9659   switch (F->schur_status) {
9660   case MAT_FACTOR_SCHUR_UNFACTORED: // fall-through
9661   case MAT_FACTOR_SCHUR_INVERTED:
9662     if (S) {
9663       S->ops->solve             = NULL;
9664       S->ops->matsolve          = NULL;
9665       S->ops->solvetranspose    = NULL;
9666       S->ops->matsolvetranspose = NULL;
9667       S->ops->solveadd          = NULL;
9668       S->ops->solvetransposeadd = NULL;
9669       S->factortype             = MAT_FACTOR_NONE;
9670       PetscCall(PetscFree(S->solvertype));
9671     }
9672   case MAT_FACTOR_SCHUR_FACTORED: // fall-through
9673     break;
9674   default:
9675     SETERRQ(PetscObjectComm((PetscObject)F), PETSC_ERR_SUP, "Unhandled MatFactorSchurStatus %d", F->schur_status);
9676   }
9677   PetscFunctionReturn(PETSC_SUCCESS);
9678 }
9679 
9680 /*@
9681   MatFactorRestoreSchurComplement - Restore the Schur complement matrix object obtained from a call to `MatFactorGetSchurComplement()`
9682 
9683   Logically Collective
9684 
9685   Input Parameters:
9686 + F      - the factored matrix obtained by calling `MatGetFactor()`
9687 . S      - location where the Schur complement is stored
9688 - status - the status of the Schur complement matrix (see `MatFactorSchurStatus`)
9689 
9690   Level: advanced
9691 
9692 .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorSetSchurIS()`, `MatFactorCreateSchurComplement()`, `MatFactorSchurStatus`
9693 @*/
9694 PetscErrorCode MatFactorRestoreSchurComplement(Mat F, Mat *S, MatFactorSchurStatus status)
9695 {
9696   PetscFunctionBegin;
9697   PetscValidHeaderSpecific(F, MAT_CLASSID, 1);
9698   if (S) {
9699     PetscValidHeaderSpecific(*S, MAT_CLASSID, 2);
9700     *S = NULL;
9701   }
9702   F->schur_status = status;
9703   PetscCall(MatFactorUpdateSchurStatus_Private(F));
9704   PetscFunctionReturn(PETSC_SUCCESS);
9705 }
9706 
9707 /*@
9708   MatFactorSolveSchurComplementTranspose - Solve the transpose of the Schur complement system computed during the factorization step
9709 
9710   Logically Collective
9711 
9712   Input Parameters:
9713 + F   - the factored matrix obtained by calling `MatGetFactor()`
9714 . rhs - location where the right hand side of the Schur complement system is stored
9715 - sol - location where the solution of the Schur complement system has to be returned
9716 
9717   Level: advanced
9718 
9719   Notes:
9720   The sizes of the vectors should match the size of the Schur complement
9721 
9722   Must be called after `MatFactorSetSchurIS()`
9723 
9724 .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorSetSchurIS()`, `MatFactorSolveSchurComplement()`
9725 @*/
9726 PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat F, Vec rhs, Vec sol)
9727 {
9728   PetscFunctionBegin;
9729   PetscValidType(F, 1);
9730   PetscValidType(rhs, 2);
9731   PetscValidType(sol, 3);
9732   PetscValidHeaderSpecific(F, MAT_CLASSID, 1);
9733   PetscValidHeaderSpecific(rhs, VEC_CLASSID, 2);
9734   PetscValidHeaderSpecific(sol, VEC_CLASSID, 3);
9735   PetscCheckSameComm(F, 1, rhs, 2);
9736   PetscCheckSameComm(F, 1, sol, 3);
9737   PetscCall(MatFactorFactorizeSchurComplement(F));
9738   switch (F->schur_status) {
9739   case MAT_FACTOR_SCHUR_FACTORED:
9740     PetscCall(MatSolveTranspose(F->schur, rhs, sol));
9741     break;
9742   case MAT_FACTOR_SCHUR_INVERTED:
9743     PetscCall(MatMultTranspose(F->schur, rhs, sol));
9744     break;
9745   default:
9746     SETERRQ(PetscObjectComm((PetscObject)F), PETSC_ERR_SUP, "Unhandled MatFactorSchurStatus %d", F->schur_status);
9747   }
9748   PetscFunctionReturn(PETSC_SUCCESS);
9749 }
9750 
9751 /*@
9752   MatFactorSolveSchurComplement - Solve the Schur complement system computed during the factorization step
9753 
9754   Logically Collective
9755 
9756   Input Parameters:
9757 + F   - the factored matrix obtained by calling `MatGetFactor()`
9758 . rhs - location where the right hand side of the Schur complement system is stored
9759 - sol - location where the solution of the Schur complement system has to be returned
9760 
9761   Level: advanced
9762 
9763   Notes:
9764   The sizes of the vectors should match the size of the Schur complement
9765 
9766   Must be called after `MatFactorSetSchurIS()`
9767 
9768 .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorSetSchurIS()`, `MatFactorSolveSchurComplementTranspose()`
9769 @*/
9770 PetscErrorCode MatFactorSolveSchurComplement(Mat F, Vec rhs, Vec sol)
9771 {
9772   PetscFunctionBegin;
9773   PetscValidType(F, 1);
9774   PetscValidType(rhs, 2);
9775   PetscValidType(sol, 3);
9776   PetscValidHeaderSpecific(F, MAT_CLASSID, 1);
9777   PetscValidHeaderSpecific(rhs, VEC_CLASSID, 2);
9778   PetscValidHeaderSpecific(sol, VEC_CLASSID, 3);
9779   PetscCheckSameComm(F, 1, rhs, 2);
9780   PetscCheckSameComm(F, 1, sol, 3);
9781   PetscCall(MatFactorFactorizeSchurComplement(F));
9782   switch (F->schur_status) {
9783   case MAT_FACTOR_SCHUR_FACTORED:
9784     PetscCall(MatSolve(F->schur, rhs, sol));
9785     break;
9786   case MAT_FACTOR_SCHUR_INVERTED:
9787     PetscCall(MatMult(F->schur, rhs, sol));
9788     break;
9789   default:
9790     SETERRQ(PetscObjectComm((PetscObject)F), PETSC_ERR_SUP, "Unhandled MatFactorSchurStatus %d", F->schur_status);
9791   }
9792   PetscFunctionReturn(PETSC_SUCCESS);
9793 }
9794 
9795 PETSC_EXTERN PetscErrorCode MatSeqDenseInvertFactors_Private(Mat);
9796 #if PetscDefined(HAVE_CUDA)
9797 PETSC_SINGLE_LIBRARY_INTERN PetscErrorCode MatSeqDenseCUDAInvertFactors_Internal(Mat);
9798 #endif
9799 
9800 /* Schur status updated in the interface */
9801 static PetscErrorCode MatFactorInvertSchurComplement_Private(Mat F)
9802 {
9803   Mat S = F->schur;
9804 
9805   PetscFunctionBegin;
9806   if (S) {
9807     PetscMPIInt size;
9808     PetscBool   isdense, isdensecuda;
9809 
9810     PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)S), &size));
9811     PetscCheck(size <= 1, PetscObjectComm((PetscObject)S), PETSC_ERR_SUP, "Not yet implemented");
9812     PetscCall(PetscObjectTypeCompare((PetscObject)S, MATSEQDENSE, &isdense));
9813     PetscCall(PetscObjectTypeCompare((PetscObject)S, MATSEQDENSECUDA, &isdensecuda));
9814     PetscCheck(isdense || isdensecuda, PetscObjectComm((PetscObject)S), PETSC_ERR_SUP, "Not implemented for type %s", ((PetscObject)S)->type_name);
9815     PetscCall(PetscLogEventBegin(MAT_FactorInvS, F, 0, 0, 0));
9816     if (isdense) {
9817       PetscCall(MatSeqDenseInvertFactors_Private(S));
9818     } else if (isdensecuda) {
9819 #if defined(PETSC_HAVE_CUDA)
9820       PetscCall(MatSeqDenseCUDAInvertFactors_Internal(S));
9821 #endif
9822     }
9823     // HIP??????????????
9824     PetscCall(PetscLogEventEnd(MAT_FactorInvS, F, 0, 0, 0));
9825   }
9826   PetscFunctionReturn(PETSC_SUCCESS);
9827 }
9828 
9829 /*@
9830   MatFactorInvertSchurComplement - Invert the Schur complement matrix computed during the factorization step
9831 
9832   Logically Collective
9833 
9834   Input Parameter:
9835 . F - the factored matrix obtained by calling `MatGetFactor()`
9836 
9837   Level: advanced
9838 
9839   Notes:
9840   Must be called after `MatFactorSetSchurIS()`.
9841 
9842   Call `MatFactorGetSchurComplement()` or  `MatFactorCreateSchurComplement()` AFTER this call to actually compute the inverse and get access to it.
9843 
9844 .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorSetSchurIS()`, `MatFactorGetSchurComplement()`, `MatFactorCreateSchurComplement()`
9845 @*/
9846 PetscErrorCode MatFactorInvertSchurComplement(Mat F)
9847 {
9848   PetscFunctionBegin;
9849   PetscValidType(F, 1);
9850   PetscValidHeaderSpecific(F, MAT_CLASSID, 1);
9851   if (F->schur_status == MAT_FACTOR_SCHUR_INVERTED) PetscFunctionReturn(PETSC_SUCCESS);
9852   PetscCall(MatFactorFactorizeSchurComplement(F));
9853   PetscCall(MatFactorInvertSchurComplement_Private(F));
9854   F->schur_status = MAT_FACTOR_SCHUR_INVERTED;
9855   PetscFunctionReturn(PETSC_SUCCESS);
9856 }
9857 
9858 /*@
9859   MatFactorFactorizeSchurComplement - Factorize the Schur complement matrix computed during the factorization step
9860 
9861   Logically Collective
9862 
9863   Input Parameter:
9864 . F - the factored matrix obtained by calling `MatGetFactor()`
9865 
9866   Level: advanced
9867 
9868   Note:
9869   Must be called after `MatFactorSetSchurIS()`
9870 
9871 .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorSetSchurIS()`, `MatFactorInvertSchurComplement()`
9872 @*/
9873 PetscErrorCode MatFactorFactorizeSchurComplement(Mat F)
9874 {
9875   MatFactorInfo info;
9876 
9877   PetscFunctionBegin;
9878   PetscValidType(F, 1);
9879   PetscValidHeaderSpecific(F, MAT_CLASSID, 1);
9880   if (F->schur_status == MAT_FACTOR_SCHUR_INVERTED || F->schur_status == MAT_FACTOR_SCHUR_FACTORED) PetscFunctionReturn(PETSC_SUCCESS);
9881   PetscCall(PetscLogEventBegin(MAT_FactorFactS, F, 0, 0, 0));
9882   PetscCall(PetscMemzero(&info, sizeof(MatFactorInfo)));
9883   if (F->factortype == MAT_FACTOR_CHOLESKY) { /* LDL^t regarded as Cholesky */
9884     PetscCall(MatCholeskyFactor(F->schur, NULL, &info));
9885   } else {
9886     PetscCall(MatLUFactor(F->schur, NULL, NULL, &info));
9887   }
9888   PetscCall(PetscLogEventEnd(MAT_FactorFactS, F, 0, 0, 0));
9889   F->schur_status = MAT_FACTOR_SCHUR_FACTORED;
9890   PetscFunctionReturn(PETSC_SUCCESS);
9891 }
9892 
9893 /*@
9894   MatPtAP - Creates the matrix product $C = P^T * A * P$
9895 
9896   Neighbor-wise Collective
9897 
9898   Input Parameters:
9899 + A     - the matrix
9900 . P     - the projection matrix
9901 . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
9902 - fill  - expected fill as ratio of nnz(C)/(nnz(A) + nnz(P)), use `PETSC_DEFAULT` if you do not have a good estimate
9903           if the result is a dense matrix this is irrelevant
9904 
9905   Output Parameter:
9906 . C - the product matrix
9907 
9908   Level: intermediate
9909 
9910   Notes:
9911   C will be created and must be destroyed by the user with `MatDestroy()`.
9912 
9913   An alternative approach to this function is to use `MatProductCreate()` and set the desired options before the computation is done
9914 
9915   Developer Note:
9916   For matrix types without special implementation the function fallbacks to `MatMatMult()` followed by `MatTransposeMatMult()`.
9917 
9918 .seealso: [](ch_matrices), `Mat`, `MatProductCreate()`, `MatMatMult()`, `MatRARt()`
9919 @*/
9920 PetscErrorCode MatPtAP(Mat A, Mat P, MatReuse scall, PetscReal fill, Mat *C)
9921 {
9922   PetscFunctionBegin;
9923   if (scall == MAT_REUSE_MATRIX) MatCheckProduct(*C, 5);
9924   PetscCheck(scall != MAT_INPLACE_MATRIX, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Inplace product not supported");
9925 
9926   if (scall == MAT_INITIAL_MATRIX) {
9927     PetscCall(MatProductCreate(A, P, NULL, C));
9928     PetscCall(MatProductSetType(*C, MATPRODUCT_PtAP));
9929     PetscCall(MatProductSetAlgorithm(*C, "default"));
9930     PetscCall(MatProductSetFill(*C, fill));
9931 
9932     (*C)->product->api_user = PETSC_TRUE;
9933     PetscCall(MatProductSetFromOptions(*C));
9934     PetscCheck((*C)->ops->productsymbolic, PetscObjectComm((PetscObject)(*C)), PETSC_ERR_SUP, "MatProduct %s not supported for A %s and P %s", MatProductTypes[MATPRODUCT_PtAP], ((PetscObject)A)->type_name, ((PetscObject)P)->type_name);
9935     PetscCall(MatProductSymbolic(*C));
9936   } else { /* scall == MAT_REUSE_MATRIX */
9937     PetscCall(MatProductReplaceMats(A, P, NULL, *C));
9938   }
9939 
9940   PetscCall(MatProductNumeric(*C));
9941   (*C)->symmetric = A->symmetric;
9942   (*C)->spd       = A->spd;
9943   PetscFunctionReturn(PETSC_SUCCESS);
9944 }
9945 
9946 /*@
9947   MatRARt - Creates the matrix product $C = R * A * R^T$
9948 
9949   Neighbor-wise Collective
9950 
9951   Input Parameters:
9952 + A     - the matrix
9953 . R     - the projection matrix
9954 . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
9955 - fill  - expected fill as ratio of nnz(C)/nnz(A), use `PETSC_DEFAULT` if you do not have a good estimate
9956           if the result is a dense matrix this is irrelevant
9957 
9958   Output Parameter:
9959 . C - the product matrix
9960 
9961   Level: intermediate
9962 
9963   Notes:
9964   C will be created and must be destroyed by the user with `MatDestroy()`.
9965 
9966   An alternative approach to this function is to use `MatProductCreate()` and set the desired options before the computation is done
9967 
9968   This routine is currently only implemented for pairs of `MATAIJ` matrices and classes
9969   which inherit from `MATAIJ`. Due to PETSc sparse matrix block row distribution among processes,
9970   parallel MatRARt is implemented via explicit transpose of R, which could be very expensive.
9971   We recommend using MatPtAP().
9972 
9973 .seealso: [](ch_matrices), `Mat`, `MatProductCreate()`, `MatMatMult()`, `MatPtAP()`
9974 @*/
9975 PetscErrorCode MatRARt(Mat A, Mat R, MatReuse scall, PetscReal fill, Mat *C)
9976 {
9977   PetscFunctionBegin;
9978   if (scall == MAT_REUSE_MATRIX) MatCheckProduct(*C, 5);
9979   PetscCheck(scall != MAT_INPLACE_MATRIX, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Inplace product not supported");
9980 
9981   if (scall == MAT_INITIAL_MATRIX) {
9982     PetscCall(MatProductCreate(A, R, NULL, C));
9983     PetscCall(MatProductSetType(*C, MATPRODUCT_RARt));
9984     PetscCall(MatProductSetAlgorithm(*C, "default"));
9985     PetscCall(MatProductSetFill(*C, fill));
9986 
9987     (*C)->product->api_user = PETSC_TRUE;
9988     PetscCall(MatProductSetFromOptions(*C));
9989     PetscCheck((*C)->ops->productsymbolic, PetscObjectComm((PetscObject)(*C)), PETSC_ERR_SUP, "MatProduct %s not supported for A %s and R %s", MatProductTypes[MATPRODUCT_RARt], ((PetscObject)A)->type_name, ((PetscObject)R)->type_name);
9990     PetscCall(MatProductSymbolic(*C));
9991   } else { /* scall == MAT_REUSE_MATRIX */
9992     PetscCall(MatProductReplaceMats(A, R, NULL, *C));
9993   }
9994 
9995   PetscCall(MatProductNumeric(*C));
9996   if (A->symmetric == PETSC_BOOL3_TRUE) PetscCall(MatSetOption(*C, MAT_SYMMETRIC, PETSC_TRUE));
9997   PetscFunctionReturn(PETSC_SUCCESS);
9998 }
9999 
10000 static PetscErrorCode MatProduct_Private(Mat A, Mat B, MatReuse scall, PetscReal fill, MatProductType ptype, Mat *C)
10001 {
10002   PetscFunctionBegin;
10003   PetscCheck(scall != MAT_INPLACE_MATRIX, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Inplace product not supported");
10004 
10005   if (scall == MAT_INITIAL_MATRIX) {
10006     PetscCall(PetscInfo(A, "Calling MatProduct API with MAT_INITIAL_MATRIX and product type %s\n", MatProductTypes[ptype]));
10007     PetscCall(MatProductCreate(A, B, NULL, C));
10008     PetscCall(MatProductSetType(*C, ptype));
10009     PetscCall(MatProductSetAlgorithm(*C, MATPRODUCTALGORITHMDEFAULT));
10010     PetscCall(MatProductSetFill(*C, fill));
10011 
10012     (*C)->product->api_user = PETSC_TRUE;
10013     PetscCall(MatProductSetFromOptions(*C));
10014     PetscCall(MatProductSymbolic(*C));
10015   } else { /* scall == MAT_REUSE_MATRIX */
10016     Mat_Product *product = (*C)->product;
10017     PetscBool    isdense;
10018 
10019     PetscCall(PetscObjectBaseTypeCompareAny((PetscObject)(*C), &isdense, MATSEQDENSE, MATMPIDENSE, ""));
10020     if (isdense && product && product->type != ptype) {
10021       PetscCall(MatProductClear(*C));
10022       product = NULL;
10023     }
10024     PetscCall(PetscInfo(A, "Calling MatProduct API with MAT_REUSE_MATRIX %s product present and product type %s\n", product ? "with" : "without", MatProductTypes[ptype]));
10025     if (!product) { /* user provide the dense matrix *C without calling MatProductCreate() or reusing it from previous calls */
10026       PetscCheck(isdense, PetscObjectComm((PetscObject)(*C)), PETSC_ERR_SUP, "Call MatProductCreate() first");
10027       PetscCall(MatProductCreate_Private(A, B, NULL, *C));
10028       product           = (*C)->product;
10029       product->fill     = fill;
10030       product->api_user = PETSC_TRUE;
10031       product->clear    = PETSC_TRUE;
10032 
10033       PetscCall(MatProductSetType(*C, ptype));
10034       PetscCall(MatProductSetFromOptions(*C));
10035       PetscCheck((*C)->ops->productsymbolic, PetscObjectComm((PetscObject)(*C)), PETSC_ERR_SUP, "MatProduct %s not supported for %s and %s", MatProductTypes[ptype], ((PetscObject)A)->type_name, ((PetscObject)B)->type_name);
10036       PetscCall(MatProductSymbolic(*C));
10037     } else { /* user may change input matrices A or B when REUSE */
10038       PetscCall(MatProductReplaceMats(A, B, NULL, *C));
10039     }
10040   }
10041   PetscCall(MatProductNumeric(*C));
10042   PetscFunctionReturn(PETSC_SUCCESS);
10043 }
10044 
10045 /*@
10046   MatMatMult - Performs matrix-matrix multiplication C=A*B.
10047 
10048   Neighbor-wise Collective
10049 
10050   Input Parameters:
10051 + A     - the left matrix
10052 . B     - the right matrix
10053 . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
10054 - fill  - expected fill as ratio of nnz(C)/(nnz(A) + nnz(B)), use `PETSC_DEFAULT` if you do not have a good estimate
10055           if the result is a dense matrix this is irrelevant
10056 
10057   Output Parameter:
10058 . C - the product matrix
10059 
10060   Notes:
10061   Unless scall is `MAT_REUSE_MATRIX` C will be created.
10062 
10063   `MAT_REUSE_MATRIX` can only be used if the matrices A and B have the same nonzero pattern as in the previous call and C was obtained from a previous
10064   call to this function with `MAT_INITIAL_MATRIX`.
10065 
10066   To determine the correct fill value, run with -info and search for the string "Fill ratio" to see the value actually needed.
10067 
10068   In the special case where matrix B (and hence C) are dense you can create the correctly sized matrix C yourself and then call this routine with `MAT_REUSE_MATRIX`,
10069   rather than first having `MatMatMult()` create it for you. You can NEVER do this if the matrix C is sparse.
10070 
10071   Example of Usage:
10072 .vb
10073      MatProductCreate(A,B,NULL,&C);
10074      MatProductSetType(C,MATPRODUCT_AB);
10075      MatProductSymbolic(C);
10076      MatProductNumeric(C); // compute C=A * B
10077      MatProductReplaceMats(A1,B1,NULL,C); // compute C=A1 * B1
10078      MatProductNumeric(C);
10079      MatProductReplaceMats(A2,NULL,NULL,C); // compute C=A2 * B1
10080      MatProductNumeric(C);
10081 .ve
10082 
10083   Level: intermediate
10084 
10085 .seealso: [](ch_matrices), `Mat`, `MatProductType`, `MATPRODUCT_AB`, `MatTransposeMatMult()`, `MatMatTransposeMult()`, `MatPtAP()`, `MatProductCreate()`, `MatProductSymbolic()`, `MatProductReplaceMats()`, `MatProductNumeric()`
10086 @*/
10087 PetscErrorCode MatMatMult(Mat A, Mat B, MatReuse scall, PetscReal fill, Mat *C)
10088 {
10089   PetscFunctionBegin;
10090   PetscCall(MatProduct_Private(A, B, scall, fill, MATPRODUCT_AB, C));
10091   PetscFunctionReturn(PETSC_SUCCESS);
10092 }
10093 
10094 /*@
10095   MatMatTransposeMult - Performs matrix-matrix multiplication $C = A*B^T$.
10096 
10097   Neighbor-wise Collective
10098 
10099   Input Parameters:
10100 + A     - the left matrix
10101 . B     - the right matrix
10102 . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
10103 - fill  - expected fill as ratio of nnz(C)/(nnz(A) + nnz(B)), use `PETSC_DEFAULT` if not known
10104 
10105   Output Parameter:
10106 . C - the product matrix
10107 
10108   Options Database Key:
10109 . -matmattransmult_mpidense_mpidense_via {allgatherv,cyclic} - Choose between algorithms for `MATMPIDENSE` matrices: the
10110               first redundantly copies the transposed `B` matrix on each process and requires O(log P) communication complexity;
10111               the second never stores more than one portion of the `B` matrix at a time but requires O(P) communication complexity.
10112 
10113   Level: intermediate
10114 
10115   Notes:
10116   C will be created if `MAT_INITIAL_MATRIX` and must be destroyed by the user with `MatDestroy()`.
10117 
10118   `MAT_REUSE_MATRIX` can only be used if the matrices A and B have the same nonzero pattern as in the previous call
10119 
10120   To determine the correct fill value, run with -info and search for the string "Fill ratio" to see the value
10121   actually needed.
10122 
10123   This routine is currently only implemented for pairs of `MATSEQAIJ` matrices, for the `MATSEQDENSE` class,
10124   and for pairs of `MATMPIDENSE` matrices.
10125 
10126   This routine is shorthand for using `MatProductCreate()` with the `MatProductType` of `MATPRODUCT_ABt`
10127 
10128 .seealso: [](ch_matrices), `Mat`, `MatProductCreate()`, `MATPRODUCT_ABt`, `MatMatMult()`, `MatTransposeMatMult()` `MatPtAP()`, `MatProductAlgorithm`, `MatProductType`
10129 @*/
10130 PetscErrorCode MatMatTransposeMult(Mat A, Mat B, MatReuse scall, PetscReal fill, Mat *C)
10131 {
10132   PetscFunctionBegin;
10133   PetscCall(MatProduct_Private(A, B, scall, fill, MATPRODUCT_ABt, C));
10134   if (A == B) PetscCall(MatSetOption(*C, MAT_SYMMETRIC, PETSC_TRUE));
10135   PetscFunctionReturn(PETSC_SUCCESS);
10136 }
10137 
10138 /*@
10139   MatTransposeMatMult - Performs matrix-matrix multiplication $C = A^T*B$.
10140 
10141   Neighbor-wise Collective
10142 
10143   Input Parameters:
10144 + A     - the left matrix
10145 . B     - the right matrix
10146 . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
10147 - fill  - expected fill as ratio of nnz(C)/(nnz(A) + nnz(B)), use `PETSC_DEFAULT` if not known
10148 
10149   Output Parameter:
10150 . C - the product matrix
10151 
10152   Level: intermediate
10153 
10154   Notes:
10155   `C` will be created if `MAT_INITIAL_MATRIX` and must be destroyed by the user with `MatDestroy()`.
10156 
10157   `MAT_REUSE_MATRIX` can only be used if the matrices A and B have the same nonzero pattern as in the previous call.
10158 
10159   This routine is shorthand for using `MatProductCreate()` with the `MatProductType` of `MATPRODUCT_AtB`
10160 
10161   To determine the correct fill value, run with -info and search for the string "Fill ratio" to see the value
10162   actually needed.
10163 
10164   This routine is currently implemented for pairs of `MATAIJ` matrices and pairs of `MATSEQDENSE` matrices and classes
10165   which inherit from `MATSEQAIJ`.  `C` will be of the same type as the input matrices.
10166 
10167 .seealso: [](ch_matrices), `Mat`, `MatProductCreate()`, `MATPRODUCT_AtB`, `MatMatMult()`, `MatMatTransposeMult()`, `MatPtAP()`
10168 @*/
10169 PetscErrorCode MatTransposeMatMult(Mat A, Mat B, MatReuse scall, PetscReal fill, Mat *C)
10170 {
10171   PetscFunctionBegin;
10172   PetscCall(MatProduct_Private(A, B, scall, fill, MATPRODUCT_AtB, C));
10173   PetscFunctionReturn(PETSC_SUCCESS);
10174 }
10175 
10176 /*@
10177   MatMatMatMult - Performs matrix-matrix-matrix multiplication D=A*B*C.
10178 
10179   Neighbor-wise Collective
10180 
10181   Input Parameters:
10182 + A     - the left matrix
10183 . B     - the middle matrix
10184 . C     - the right matrix
10185 . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
10186 - fill  - expected fill as ratio of nnz(D)/(nnz(A) + nnz(B)+nnz(C)), use `PETSC_DEFAULT` if you do not have a good estimate
10187           if the result is a dense matrix this is irrelevant
10188 
10189   Output Parameter:
10190 . D - the product matrix
10191 
10192   Level: intermediate
10193 
10194   Notes:
10195   Unless `scall` is `MAT_REUSE_MATRIX` D will be created.
10196 
10197   `MAT_REUSE_MATRIX` can only be used if the matrices `A`, `B`, and `C` have the same nonzero pattern as in the previous call
10198 
10199   This routine is shorthand for using `MatProductCreate()` with the `MatProductType` of `MATPRODUCT_ABC`
10200 
10201   To determine the correct fill value, run with -info and search for the string "Fill ratio" to see the value
10202   actually needed.
10203 
10204   If you have many matrices with the same non-zero structure to multiply, you
10205   should use `MAT_REUSE_MATRIX` in all calls but the first
10206 
10207 .seealso: [](ch_matrices), `Mat`, `MatProductCreate()`, `MATPRODUCT_ABC`, `MatMatMult`, `MatPtAP()`, `MatMatTransposeMult()`, `MatTransposeMatMult()`
10208 @*/
10209 PetscErrorCode MatMatMatMult(Mat A, Mat B, Mat C, MatReuse scall, PetscReal fill, Mat *D)
10210 {
10211   PetscFunctionBegin;
10212   if (scall == MAT_REUSE_MATRIX) MatCheckProduct(*D, 6);
10213   PetscCheck(scall != MAT_INPLACE_MATRIX, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Inplace product not supported");
10214 
10215   if (scall == MAT_INITIAL_MATRIX) {
10216     PetscCall(MatProductCreate(A, B, C, D));
10217     PetscCall(MatProductSetType(*D, MATPRODUCT_ABC));
10218     PetscCall(MatProductSetAlgorithm(*D, "default"));
10219     PetscCall(MatProductSetFill(*D, fill));
10220 
10221     (*D)->product->api_user = PETSC_TRUE;
10222     PetscCall(MatProductSetFromOptions(*D));
10223     PetscCheck((*D)->ops->productsymbolic, PetscObjectComm((PetscObject)(*D)), PETSC_ERR_SUP, "MatProduct %s not supported for A %s, B %s and C %s", MatProductTypes[MATPRODUCT_ABC], ((PetscObject)A)->type_name, ((PetscObject)B)->type_name,
10224                ((PetscObject)C)->type_name);
10225     PetscCall(MatProductSymbolic(*D));
10226   } else { /* user may change input matrices when REUSE */
10227     PetscCall(MatProductReplaceMats(A, B, C, *D));
10228   }
10229   PetscCall(MatProductNumeric(*D));
10230   PetscFunctionReturn(PETSC_SUCCESS);
10231 }
10232 
10233 /*@
10234   MatCreateRedundantMatrix - Create redundant matrices and put them into processors of subcommunicators.
10235 
10236   Collective
10237 
10238   Input Parameters:
10239 + mat      - the matrix
10240 . nsubcomm - the number of subcommunicators (= number of redundant parallel or sequential matrices)
10241 . subcomm  - MPI communicator split from the communicator where mat resides in (or `MPI_COMM_NULL` if nsubcomm is used)
10242 - reuse    - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
10243 
10244   Output Parameter:
10245 . matredundant - redundant matrix
10246 
10247   Level: advanced
10248 
10249   Notes:
10250   `MAT_REUSE_MATRIX` can only be used when the nonzero structure of the
10251   original matrix has not changed from that last call to `MatCreateRedundantMatrix()`.
10252 
10253   This routine creates the duplicated matrices in the subcommunicators; you should NOT create them before
10254   calling it.
10255 
10256   `PetscSubcommCreate()` can be used to manage the creation of the subcomm but need not be.
10257 
10258 .seealso: [](ch_matrices), `Mat`, `MatDestroy()`, `PetscSubcommCreate()`, `PetscSubcomm`
10259 @*/
10260 PetscErrorCode MatCreateRedundantMatrix(Mat mat, PetscInt nsubcomm, MPI_Comm subcomm, MatReuse reuse, Mat *matredundant)
10261 {
10262   MPI_Comm       comm;
10263   PetscMPIInt    size;
10264   PetscInt       mloc_sub, nloc_sub, rstart, rend, M = mat->rmap->N, N = mat->cmap->N, bs = mat->rmap->bs;
10265   Mat_Redundant *redund     = NULL;
10266   PetscSubcomm   psubcomm   = NULL;
10267   MPI_Comm       subcomm_in = subcomm;
10268   Mat           *matseq;
10269   IS             isrow, iscol;
10270   PetscBool      newsubcomm = PETSC_FALSE;
10271 
10272   PetscFunctionBegin;
10273   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
10274   if (nsubcomm && reuse == MAT_REUSE_MATRIX) {
10275     PetscAssertPointer(*matredundant, 5);
10276     PetscValidHeaderSpecific(*matredundant, MAT_CLASSID, 5);
10277   }
10278 
10279   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)mat), &size));
10280   if (size == 1 || nsubcomm == 1) {
10281     if (reuse == MAT_INITIAL_MATRIX) {
10282       PetscCall(MatDuplicate(mat, MAT_COPY_VALUES, matredundant));
10283     } else {
10284       PetscCheck(*matredundant != mat, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "MAT_REUSE_MATRIX means reuse the matrix passed in as the final argument, not the original matrix");
10285       PetscCall(MatCopy(mat, *matredundant, SAME_NONZERO_PATTERN));
10286     }
10287     PetscFunctionReturn(PETSC_SUCCESS);
10288   }
10289 
10290   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
10291   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
10292   MatCheckPreallocated(mat, 1);
10293 
10294   PetscCall(PetscLogEventBegin(MAT_RedundantMat, mat, 0, 0, 0));
10295   if (subcomm_in == MPI_COMM_NULL && reuse == MAT_INITIAL_MATRIX) { /* get subcomm if user does not provide subcomm */
10296     /* create psubcomm, then get subcomm */
10297     PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
10298     PetscCallMPI(MPI_Comm_size(comm, &size));
10299     PetscCheck(nsubcomm >= 1 && nsubcomm <= size, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "nsubcomm must between 1 and %d", size);
10300 
10301     PetscCall(PetscSubcommCreate(comm, &psubcomm));
10302     PetscCall(PetscSubcommSetNumber(psubcomm, nsubcomm));
10303     PetscCall(PetscSubcommSetType(psubcomm, PETSC_SUBCOMM_CONTIGUOUS));
10304     PetscCall(PetscSubcommSetFromOptions(psubcomm));
10305     PetscCall(PetscCommDuplicate(PetscSubcommChild(psubcomm), &subcomm, NULL));
10306     newsubcomm = PETSC_TRUE;
10307     PetscCall(PetscSubcommDestroy(&psubcomm));
10308   }
10309 
10310   /* get isrow, iscol and a local sequential matrix matseq[0] */
10311   if (reuse == MAT_INITIAL_MATRIX) {
10312     mloc_sub = PETSC_DECIDE;
10313     nloc_sub = PETSC_DECIDE;
10314     if (bs < 1) {
10315       PetscCall(PetscSplitOwnership(subcomm, &mloc_sub, &M));
10316       PetscCall(PetscSplitOwnership(subcomm, &nloc_sub, &N));
10317     } else {
10318       PetscCall(PetscSplitOwnershipBlock(subcomm, bs, &mloc_sub, &M));
10319       PetscCall(PetscSplitOwnershipBlock(subcomm, bs, &nloc_sub, &N));
10320     }
10321     PetscCallMPI(MPI_Scan(&mloc_sub, &rend, 1, MPIU_INT, MPI_SUM, subcomm));
10322     rstart = rend - mloc_sub;
10323     PetscCall(ISCreateStride(PETSC_COMM_SELF, mloc_sub, rstart, 1, &isrow));
10324     PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol));
10325     PetscCall(ISSetIdentity(iscol));
10326   } else { /* reuse == MAT_REUSE_MATRIX */
10327     PetscCheck(*matredundant != mat, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "MAT_REUSE_MATRIX means reuse the matrix passed in as the final argument, not the original matrix");
10328     /* retrieve subcomm */
10329     PetscCall(PetscObjectGetComm((PetscObject)(*matredundant), &subcomm));
10330     redund = (*matredundant)->redundant;
10331     isrow  = redund->isrow;
10332     iscol  = redund->iscol;
10333     matseq = redund->matseq;
10334   }
10335   PetscCall(MatCreateSubMatrices(mat, 1, &isrow, &iscol, reuse, &matseq));
10336 
10337   /* get matredundant over subcomm */
10338   if (reuse == MAT_INITIAL_MATRIX) {
10339     PetscCall(MatCreateMPIMatConcatenateSeqMat(subcomm, matseq[0], nloc_sub, reuse, matredundant));
10340 
10341     /* create a supporting struct and attach it to C for reuse */
10342     PetscCall(PetscNew(&redund));
10343     (*matredundant)->redundant = redund;
10344     redund->isrow              = isrow;
10345     redund->iscol              = iscol;
10346     redund->matseq             = matseq;
10347     if (newsubcomm) {
10348       redund->subcomm = subcomm;
10349     } else {
10350       redund->subcomm = MPI_COMM_NULL;
10351     }
10352   } else {
10353     PetscCall(MatCreateMPIMatConcatenateSeqMat(subcomm, matseq[0], PETSC_DECIDE, reuse, matredundant));
10354   }
10355 #if defined(PETSC_HAVE_VIENNACL) || defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP)
10356   if (matseq[0]->boundtocpu && matseq[0]->bindingpropagates) {
10357     PetscCall(MatBindToCPU(*matredundant, PETSC_TRUE));
10358     PetscCall(MatSetBindingPropagates(*matredundant, PETSC_TRUE));
10359   }
10360 #endif
10361   PetscCall(PetscLogEventEnd(MAT_RedundantMat, mat, 0, 0, 0));
10362   PetscFunctionReturn(PETSC_SUCCESS);
10363 }
10364 
10365 /*@C
10366   MatGetMultiProcBlock - Create multiple 'parallel submatrices' from
10367   a given `Mat`. Each submatrix can span multiple procs.
10368 
10369   Collective
10370 
10371   Input Parameters:
10372 + mat     - the matrix
10373 . subComm - the sub communicator obtained as if by `MPI_Comm_split(PetscObjectComm((PetscObject)mat))`
10374 - scall   - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
10375 
10376   Output Parameter:
10377 . subMat - parallel sub-matrices each spanning a given `subcomm`
10378 
10379   Level: advanced
10380 
10381   Notes:
10382   The submatrix partition across processors is dictated by `subComm` a
10383   communicator obtained by `MPI_comm_split()` or via `PetscSubcommCreate()`. The `subComm`
10384   is not restricted to be grouped with consecutive original MPI processes.
10385 
10386   Due the `MPI_Comm_split()` usage, the parallel layout of the submatrices
10387   map directly to the layout of the original matrix [wrt the local
10388   row,col partitioning]. So the original 'DiagonalMat' naturally maps
10389   into the 'DiagonalMat' of the `subMat`, hence it is used directly from
10390   the `subMat`. However the offDiagMat looses some columns - and this is
10391   reconstructed with `MatSetValues()`
10392 
10393   This is used by `PCBJACOBI` when a single block spans multiple MPI processes.
10394 
10395 .seealso: [](ch_matrices), `Mat`, `MatCreateRedundantMatrix()`, `MatCreateSubMatrices()`, `PCBJACOBI`
10396 @*/
10397 PetscErrorCode MatGetMultiProcBlock(Mat mat, MPI_Comm subComm, MatReuse scall, Mat *subMat)
10398 {
10399   PetscMPIInt commsize, subCommSize;
10400 
10401   PetscFunctionBegin;
10402   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)mat), &commsize));
10403   PetscCallMPI(MPI_Comm_size(subComm, &subCommSize));
10404   PetscCheck(subCommSize <= commsize, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_OUTOFRANGE, "CommSize %d < SubCommZize %d", commsize, subCommSize);
10405 
10406   PetscCheck(scall != MAT_REUSE_MATRIX || *subMat != mat, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "MAT_REUSE_MATRIX means reuse the matrix passed in as the final argument, not the original matrix");
10407   PetscCall(PetscLogEventBegin(MAT_GetMultiProcBlock, mat, 0, 0, 0));
10408   PetscUseTypeMethod(mat, getmultiprocblock, subComm, scall, subMat);
10409   PetscCall(PetscLogEventEnd(MAT_GetMultiProcBlock, mat, 0, 0, 0));
10410   PetscFunctionReturn(PETSC_SUCCESS);
10411 }
10412 
10413 /*@
10414   MatGetLocalSubMatrix - Gets a reference to a submatrix specified in local numbering
10415 
10416   Not Collective
10417 
10418   Input Parameters:
10419 + mat   - matrix to extract local submatrix from
10420 . isrow - local row indices for submatrix
10421 - iscol - local column indices for submatrix
10422 
10423   Output Parameter:
10424 . submat - the submatrix
10425 
10426   Level: intermediate
10427 
10428   Notes:
10429   `submat` should be disposed of with `MatRestoreLocalSubMatrix()`.
10430 
10431   Depending on the format of `mat`, the returned `submat` may not implement `MatMult()`.  Its communicator may be
10432   the same as `mat`, it may be `PETSC_COMM_SELF`, or some other sub-communictor of `mat`'s.
10433 
10434   `submat` always implements `MatSetValuesLocal()`.  If `isrow` and `iscol` have the same block size, then
10435   `MatSetValuesBlockedLocal()` will also be implemented.
10436 
10437   `mat` must have had a `ISLocalToGlobalMapping` provided to it with `MatSetLocalToGlobalMapping()`.
10438   Matrices obtained with `DMCreateMatrix()` generally already have the local to global mapping provided.
10439 
10440 .seealso: [](ch_matrices), `Mat`, `MatRestoreLocalSubMatrix()`, `MatCreateLocalRef()`, `MatSetLocalToGlobalMapping()`
10441 @*/
10442 PetscErrorCode MatGetLocalSubMatrix(Mat mat, IS isrow, IS iscol, Mat *submat)
10443 {
10444   PetscFunctionBegin;
10445   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
10446   PetscValidHeaderSpecific(isrow, IS_CLASSID, 2);
10447   PetscValidHeaderSpecific(iscol, IS_CLASSID, 3);
10448   PetscCheckSameComm(isrow, 2, iscol, 3);
10449   PetscAssertPointer(submat, 4);
10450   PetscCheck(mat->rmap->mapping, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Matrix must have local to global mapping provided before this call");
10451 
10452   if (mat->ops->getlocalsubmatrix) {
10453     PetscUseTypeMethod(mat, getlocalsubmatrix, isrow, iscol, submat);
10454   } else {
10455     PetscCall(MatCreateLocalRef(mat, isrow, iscol, submat));
10456   }
10457   PetscFunctionReturn(PETSC_SUCCESS);
10458 }
10459 
10460 /*@
10461   MatRestoreLocalSubMatrix - Restores a reference to a submatrix specified in local numbering obtained with `MatGetLocalSubMatrix()`
10462 
10463   Not Collective
10464 
10465   Input Parameters:
10466 + mat    - matrix to extract local submatrix from
10467 . isrow  - local row indices for submatrix
10468 . iscol  - local column indices for submatrix
10469 - submat - the submatrix
10470 
10471   Level: intermediate
10472 
10473 .seealso: [](ch_matrices), `Mat`, `MatGetLocalSubMatrix()`
10474 @*/
10475 PetscErrorCode MatRestoreLocalSubMatrix(Mat mat, IS isrow, IS iscol, Mat *submat)
10476 {
10477   PetscFunctionBegin;
10478   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
10479   PetscValidHeaderSpecific(isrow, IS_CLASSID, 2);
10480   PetscValidHeaderSpecific(iscol, IS_CLASSID, 3);
10481   PetscCheckSameComm(isrow, 2, iscol, 3);
10482   PetscAssertPointer(submat, 4);
10483   if (*submat) PetscValidHeaderSpecific(*submat, MAT_CLASSID, 4);
10484 
10485   if (mat->ops->restorelocalsubmatrix) {
10486     PetscUseTypeMethod(mat, restorelocalsubmatrix, isrow, iscol, submat);
10487   } else {
10488     PetscCall(MatDestroy(submat));
10489   }
10490   *submat = NULL;
10491   PetscFunctionReturn(PETSC_SUCCESS);
10492 }
10493 
10494 /*@
10495   MatFindZeroDiagonals - Finds all the rows of a matrix that have zero or no diagonal entry in the matrix
10496 
10497   Collective
10498 
10499   Input Parameter:
10500 . mat - the matrix
10501 
10502   Output Parameter:
10503 . is - if any rows have zero diagonals this contains the list of them
10504 
10505   Level: developer
10506 
10507 .seealso: [](ch_matrices), `Mat`, `MatMultTranspose()`, `MatMultAdd()`, `MatMultTransposeAdd()`
10508 @*/
10509 PetscErrorCode MatFindZeroDiagonals(Mat mat, IS *is)
10510 {
10511   PetscFunctionBegin;
10512   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
10513   PetscValidType(mat, 1);
10514   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
10515   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
10516 
10517   if (!mat->ops->findzerodiagonals) {
10518     Vec                diag;
10519     const PetscScalar *a;
10520     PetscInt          *rows;
10521     PetscInt           rStart, rEnd, r, nrow = 0;
10522 
10523     PetscCall(MatCreateVecs(mat, &diag, NULL));
10524     PetscCall(MatGetDiagonal(mat, diag));
10525     PetscCall(MatGetOwnershipRange(mat, &rStart, &rEnd));
10526     PetscCall(VecGetArrayRead(diag, &a));
10527     for (r = 0; r < rEnd - rStart; ++r)
10528       if (a[r] == 0.0) ++nrow;
10529     PetscCall(PetscMalloc1(nrow, &rows));
10530     nrow = 0;
10531     for (r = 0; r < rEnd - rStart; ++r)
10532       if (a[r] == 0.0) rows[nrow++] = r + rStart;
10533     PetscCall(VecRestoreArrayRead(diag, &a));
10534     PetscCall(VecDestroy(&diag));
10535     PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)mat), nrow, rows, PETSC_OWN_POINTER, is));
10536   } else {
10537     PetscUseTypeMethod(mat, findzerodiagonals, is);
10538   }
10539   PetscFunctionReturn(PETSC_SUCCESS);
10540 }
10541 
10542 /*@
10543   MatFindOffBlockDiagonalEntries - Finds all the rows of a matrix that have entries outside of the main diagonal block (defined by the matrix block size)
10544 
10545   Collective
10546 
10547   Input Parameter:
10548 . mat - the matrix
10549 
10550   Output Parameter:
10551 . is - contains the list of rows with off block diagonal entries
10552 
10553   Level: developer
10554 
10555 .seealso: [](ch_matrices), `Mat`, `MatMultTranspose()`, `MatMultAdd()`, `MatMultTransposeAdd()`
10556 @*/
10557 PetscErrorCode MatFindOffBlockDiagonalEntries(Mat mat, IS *is)
10558 {
10559   PetscFunctionBegin;
10560   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
10561   PetscValidType(mat, 1);
10562   PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
10563   PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
10564 
10565   PetscUseTypeMethod(mat, findoffblockdiagonalentries, is);
10566   PetscFunctionReturn(PETSC_SUCCESS);
10567 }
10568 
10569 /*@C
10570   MatInvertBlockDiagonal - Inverts the block diagonal entries.
10571 
10572   Collective; No Fortran Support
10573 
10574   Input Parameter:
10575 . mat - the matrix
10576 
10577   Output Parameter:
10578 . values - the block inverses in column major order (FORTRAN-like)
10579 
10580   Level: advanced
10581 
10582   Notes:
10583   The size of the blocks is determined by the block size of the matrix.
10584 
10585   The blocks never overlap between two MPI processes, use `MatInvertVariableBlockEnvelope()` for that case
10586 
10587   The blocks all have the same size, use `MatInvertVariableBlockDiagonal()` for variable block size
10588 
10589 .seealso: [](ch_matrices), `Mat`, `MatInvertVariableBlockEnvelope()`, `MatInvertBlockDiagonalMat()`
10590 @*/
10591 PetscErrorCode MatInvertBlockDiagonal(Mat mat, const PetscScalar **values)
10592 {
10593   PetscFunctionBegin;
10594   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
10595   PetscCheck(mat->assembled, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
10596   PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
10597   PetscUseTypeMethod(mat, invertblockdiagonal, values);
10598   PetscFunctionReturn(PETSC_SUCCESS);
10599 }
10600 
10601 /*@C
10602   MatInvertVariableBlockDiagonal - Inverts the point block diagonal entries.
10603 
10604   Collective; No Fortran Support
10605 
10606   Input Parameters:
10607 + mat     - the matrix
10608 . nblocks - the number of blocks on the process, set with `MatSetVariableBlockSizes()`
10609 - bsizes  - the size of each block on the process, set with `MatSetVariableBlockSizes()`
10610 
10611   Output Parameter:
10612 . values - the block inverses in column major order (FORTRAN-like)
10613 
10614   Level: advanced
10615 
10616   Notes:
10617   Use `MatInvertBlockDiagonal()` if all blocks have the same size
10618 
10619   The blocks never overlap between two MPI processes, use `MatInvertVariableBlockEnvelope()` for that case
10620 
10621 .seealso: [](ch_matrices), `Mat`, `MatInvertBlockDiagonal()`, `MatSetVariableBlockSizes()`, `MatInvertVariableBlockEnvelope()`
10622 @*/
10623 PetscErrorCode MatInvertVariableBlockDiagonal(Mat mat, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *values)
10624 {
10625   PetscFunctionBegin;
10626   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
10627   PetscCheck(mat->assembled, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix");
10628   PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
10629   PetscUseTypeMethod(mat, invertvariableblockdiagonal, nblocks, bsizes, values);
10630   PetscFunctionReturn(PETSC_SUCCESS);
10631 }
10632 
10633 /*@
10634   MatInvertBlockDiagonalMat - set the values of matrix C to be the inverted block diagonal of matrix A
10635 
10636   Collective
10637 
10638   Input Parameters:
10639 + A - the matrix
10640 - C - matrix with inverted block diagonal of `A`.  This matrix should be created and may have its type set.
10641 
10642   Level: advanced
10643 
10644   Note:
10645   The blocksize of the matrix is used to determine the blocks on the diagonal of `C`
10646 
10647 .seealso: [](ch_matrices), `Mat`, `MatInvertBlockDiagonal()`
10648 @*/
10649 PetscErrorCode MatInvertBlockDiagonalMat(Mat A, Mat C)
10650 {
10651   const PetscScalar *vals;
10652   PetscInt          *dnnz;
10653   PetscInt           m, rstart, rend, bs, i, j;
10654 
10655   PetscFunctionBegin;
10656   PetscCall(MatInvertBlockDiagonal(A, &vals));
10657   PetscCall(MatGetBlockSize(A, &bs));
10658   PetscCall(MatGetLocalSize(A, &m, NULL));
10659   PetscCall(MatSetLayouts(C, A->rmap, A->cmap));
10660   PetscCall(PetscMalloc1(m / bs, &dnnz));
10661   for (j = 0; j < m / bs; j++) dnnz[j] = 1;
10662   PetscCall(MatXAIJSetPreallocation(C, bs, dnnz, NULL, NULL, NULL));
10663   PetscCall(PetscFree(dnnz));
10664   PetscCall(MatGetOwnershipRange(C, &rstart, &rend));
10665   PetscCall(MatSetOption(C, MAT_ROW_ORIENTED, PETSC_FALSE));
10666   for (i = rstart / bs; i < rend / bs; i++) PetscCall(MatSetValuesBlocked(C, 1, &i, 1, &i, &vals[(i - rstart / bs) * bs * bs], INSERT_VALUES));
10667   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
10668   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
10669   PetscCall(MatSetOption(C, MAT_ROW_ORIENTED, PETSC_TRUE));
10670   PetscFunctionReturn(PETSC_SUCCESS);
10671 }
10672 
10673 /*@C
10674   MatTransposeColoringDestroy - Destroys a coloring context for matrix product $C = A*B^T$ that was created
10675   via `MatTransposeColoringCreate()`.
10676 
10677   Collective
10678 
10679   Input Parameter:
10680 . c - coloring context
10681 
10682   Level: intermediate
10683 
10684 .seealso: [](ch_matrices), `Mat`, `MatTransposeColoringCreate()`
10685 @*/
10686 PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring *c)
10687 {
10688   MatTransposeColoring matcolor = *c;
10689 
10690   PetscFunctionBegin;
10691   if (!matcolor) PetscFunctionReturn(PETSC_SUCCESS);
10692   if (--((PetscObject)matcolor)->refct > 0) {
10693     matcolor = NULL;
10694     PetscFunctionReturn(PETSC_SUCCESS);
10695   }
10696 
10697   PetscCall(PetscFree3(matcolor->ncolumns, matcolor->nrows, matcolor->colorforrow));
10698   PetscCall(PetscFree(matcolor->rows));
10699   PetscCall(PetscFree(matcolor->den2sp));
10700   PetscCall(PetscFree(matcolor->colorforcol));
10701   PetscCall(PetscFree(matcolor->columns));
10702   if (matcolor->brows > 0) PetscCall(PetscFree(matcolor->lstart));
10703   PetscCall(PetscHeaderDestroy(c));
10704   PetscFunctionReturn(PETSC_SUCCESS);
10705 }
10706 
10707 /*@C
10708   MatTransColoringApplySpToDen - Given a symbolic matrix product $C = A*B^T$ for which
10709   a `MatTransposeColoring` context has been created, computes a dense $B^T$ by applying
10710   `MatTransposeColoring` to sparse `B`.
10711 
10712   Collective
10713 
10714   Input Parameters:
10715 + coloring - coloring context created with `MatTransposeColoringCreate()`
10716 - B        - sparse matrix
10717 
10718   Output Parameter:
10719 . Btdense - dense matrix $B^T$
10720 
10721   Level: developer
10722 
10723   Note:
10724   These are used internally for some implementations of `MatRARt()`
10725 
10726 .seealso: [](ch_matrices), `Mat`, `MatTransposeColoringCreate()`, `MatTransposeColoringDestroy()`, `MatTransColoringApplyDenToSp()`
10727 @*/
10728 PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring coloring, Mat B, Mat Btdense)
10729 {
10730   PetscFunctionBegin;
10731   PetscValidHeaderSpecific(coloring, MAT_TRANSPOSECOLORING_CLASSID, 1);
10732   PetscValidHeaderSpecific(B, MAT_CLASSID, 2);
10733   PetscValidHeaderSpecific(Btdense, MAT_CLASSID, 3);
10734 
10735   PetscCall((*B->ops->transcoloringapplysptoden)(coloring, B, Btdense));
10736   PetscFunctionReturn(PETSC_SUCCESS);
10737 }
10738 
10739 /*@C
10740   MatTransColoringApplyDenToSp - Given a symbolic matrix product $C_{sp} = A*B^T$ for which
10741   a `MatTransposeColoring` context has been created and a dense matrix $C_{den} = A*B^T_{dense}$
10742   in which `B^T_{dens}` is obtained from `MatTransColoringApplySpToDen()`, recover sparse matrix
10743   $C_{sp}$ from $C_{den}$.
10744 
10745   Collective
10746 
10747   Input Parameters:
10748 + matcoloring - coloring context created with `MatTransposeColoringCreate()`
10749 - Cden        - matrix product of a sparse matrix and a dense matrix Btdense
10750 
10751   Output Parameter:
10752 . Csp - sparse matrix
10753 
10754   Level: developer
10755 
10756   Note:
10757   These are used internally for some implementations of `MatRARt()`
10758 
10759 .seealso: [](ch_matrices), `Mat`, `MatTransposeColoringCreate()`, `MatTransposeColoringDestroy()`, `MatTransColoringApplySpToDen()`
10760 @*/
10761 PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring matcoloring, Mat Cden, Mat Csp)
10762 {
10763   PetscFunctionBegin;
10764   PetscValidHeaderSpecific(matcoloring, MAT_TRANSPOSECOLORING_CLASSID, 1);
10765   PetscValidHeaderSpecific(Cden, MAT_CLASSID, 2);
10766   PetscValidHeaderSpecific(Csp, MAT_CLASSID, 3);
10767 
10768   PetscCall((*Csp->ops->transcoloringapplydentosp)(matcoloring, Cden, Csp));
10769   PetscCall(MatAssemblyBegin(Csp, MAT_FINAL_ASSEMBLY));
10770   PetscCall(MatAssemblyEnd(Csp, MAT_FINAL_ASSEMBLY));
10771   PetscFunctionReturn(PETSC_SUCCESS);
10772 }
10773 
10774 /*@C
10775   MatTransposeColoringCreate - Creates a matrix coloring context for the matrix product $C = A*B^T$.
10776 
10777   Collective
10778 
10779   Input Parameters:
10780 + mat        - the matrix product C
10781 - iscoloring - the coloring of the matrix; usually obtained with `MatColoringCreate()` or `DMCreateColoring()`
10782 
10783   Output Parameter:
10784 . color - the new coloring context
10785 
10786   Level: intermediate
10787 
10788 .seealso: [](ch_matrices), `Mat`, `MatTransposeColoringDestroy()`, `MatTransColoringApplySpToDen()`,
10789           `MatTransColoringApplyDenToSp()`
10790 @*/
10791 PetscErrorCode MatTransposeColoringCreate(Mat mat, ISColoring iscoloring, MatTransposeColoring *color)
10792 {
10793   MatTransposeColoring c;
10794   MPI_Comm             comm;
10795 
10796   PetscFunctionBegin;
10797   PetscCall(PetscLogEventBegin(MAT_TransposeColoringCreate, mat, 0, 0, 0));
10798   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
10799   PetscCall(PetscHeaderCreate(c, MAT_TRANSPOSECOLORING_CLASSID, "MatTransposeColoring", "Matrix product C=A*B^T via coloring", "Mat", comm, MatTransposeColoringDestroy, NULL));
10800 
10801   c->ctype = iscoloring->ctype;
10802   PetscUseTypeMethod(mat, transposecoloringcreate, iscoloring, c);
10803 
10804   *color = c;
10805   PetscCall(PetscLogEventEnd(MAT_TransposeColoringCreate, mat, 0, 0, 0));
10806   PetscFunctionReturn(PETSC_SUCCESS);
10807 }
10808 
10809 /*@
10810   MatGetNonzeroState - Returns a 64-bit integer representing the current state of nonzeros in the matrix. If the
10811   matrix has had no new nonzero locations added to (or removed from) the matrix since the previous call then the value will be the
10812   same, otherwise it will be larger
10813 
10814   Not Collective
10815 
10816   Input Parameter:
10817 . mat - the matrix
10818 
10819   Output Parameter:
10820 . state - the current state
10821 
10822   Level: intermediate
10823 
10824   Notes:
10825   You can only compare states from two different calls to the SAME matrix, you cannot compare calls between
10826   different matrices
10827 
10828   Use `PetscObjectStateGet()` to check for changes to the numerical values in a matrix
10829 
10830   Use the result of `PetscObjectGetId()` to compare if a previously checked matrix is the same as the current matrix, do not compare object pointers.
10831 
10832 .seealso: [](ch_matrices), `Mat`, `PetscObjectStateGet()`, `PetscObjectGetId()`
10833 @*/
10834 PetscErrorCode MatGetNonzeroState(Mat mat, PetscObjectState *state)
10835 {
10836   PetscFunctionBegin;
10837   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
10838   *state = mat->nonzerostate;
10839   PetscFunctionReturn(PETSC_SUCCESS);
10840 }
10841 
10842 /*@
10843   MatCreateMPIMatConcatenateSeqMat - Creates a single large PETSc matrix by concatenating sequential
10844   matrices from each processor
10845 
10846   Collective
10847 
10848   Input Parameters:
10849 + comm   - the communicators the parallel matrix will live on
10850 . seqmat - the input sequential matrices
10851 . n      - number of local columns (or `PETSC_DECIDE`)
10852 - reuse  - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
10853 
10854   Output Parameter:
10855 . mpimat - the parallel matrix generated
10856 
10857   Level: developer
10858 
10859   Note:
10860   The number of columns of the matrix in EACH processor MUST be the same.
10861 
10862 .seealso: [](ch_matrices), `Mat`
10863 @*/
10864 PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm comm, Mat seqmat, PetscInt n, MatReuse reuse, Mat *mpimat)
10865 {
10866   PetscMPIInt size;
10867 
10868   PetscFunctionBegin;
10869   PetscCallMPI(MPI_Comm_size(comm, &size));
10870   if (size == 1) {
10871     if (reuse == MAT_INITIAL_MATRIX) {
10872       PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat));
10873     } else {
10874       PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN));
10875     }
10876     PetscFunctionReturn(PETSC_SUCCESS);
10877   }
10878 
10879   PetscCheck(reuse != MAT_REUSE_MATRIX || seqmat != *mpimat, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "MAT_REUSE_MATRIX means reuse the matrix passed in as the final argument, not the original matrix");
10880 
10881   PetscCall(PetscLogEventBegin(MAT_Merge, seqmat, 0, 0, 0));
10882   PetscCall((*seqmat->ops->creatempimatconcatenateseqmat)(comm, seqmat, n, reuse, mpimat));
10883   PetscCall(PetscLogEventEnd(MAT_Merge, seqmat, 0, 0, 0));
10884   PetscFunctionReturn(PETSC_SUCCESS);
10885 }
10886 
10887 /*@
10888   MatSubdomainsCreateCoalesce - Creates index subdomains by coalescing adjacent MPI processes' ownership ranges.
10889 
10890   Collective
10891 
10892   Input Parameters:
10893 + A - the matrix to create subdomains from
10894 - N - requested number of subdomains
10895 
10896   Output Parameters:
10897 + n   - number of subdomains resulting on this MPI process
10898 - iss - `IS` list with indices of subdomains on this MPI process
10899 
10900   Level: advanced
10901 
10902   Note:
10903   The number of subdomains must be smaller than the communicator size
10904 
10905 .seealso: [](ch_matrices), `Mat`, `IS`
10906 @*/
10907 PetscErrorCode MatSubdomainsCreateCoalesce(Mat A, PetscInt N, PetscInt *n, IS *iss[])
10908 {
10909   MPI_Comm    comm, subcomm;
10910   PetscMPIInt size, rank, color;
10911   PetscInt    rstart, rend, k;
10912 
10913   PetscFunctionBegin;
10914   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
10915   PetscCallMPI(MPI_Comm_size(comm, &size));
10916   PetscCallMPI(MPI_Comm_rank(comm, &rank));
10917   PetscCheck(N >= 1 && N < (PetscInt)size, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "number of subdomains must be > 0 and < %d, got N = %" PetscInt_FMT, size, N);
10918   *n    = 1;
10919   k     = ((PetscInt)size) / N + ((PetscInt)size % N > 0); /* There are up to k ranks to a color */
10920   color = rank / k;
10921   PetscCallMPI(MPI_Comm_split(comm, color, rank, &subcomm));
10922   PetscCall(PetscMalloc1(1, iss));
10923   PetscCall(MatGetOwnershipRange(A, &rstart, &rend));
10924   PetscCall(ISCreateStride(subcomm, rend - rstart, rstart, 1, iss[0]));
10925   PetscCallMPI(MPI_Comm_free(&subcomm));
10926   PetscFunctionReturn(PETSC_SUCCESS);
10927 }
10928 
10929 /*@
10930   MatGalerkin - Constructs the coarse grid problem matrix via Galerkin projection.
10931 
10932   If the interpolation and restriction operators are the same, uses `MatPtAP()`.
10933   If they are not the same, uses `MatMatMatMult()`.
10934 
10935   Once the coarse grid problem is constructed, correct for interpolation operators
10936   that are not of full rank, which can legitimately happen in the case of non-nested
10937   geometric multigrid.
10938 
10939   Input Parameters:
10940 + restrct     - restriction operator
10941 . dA          - fine grid matrix
10942 . interpolate - interpolation operator
10943 . reuse       - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
10944 - fill        - expected fill, use `PETSC_DEFAULT` if you do not have a good estimate
10945 
10946   Output Parameter:
10947 . A - the Galerkin coarse matrix
10948 
10949   Options Database Key:
10950 . -pc_mg_galerkin <both,pmat,mat,none> - for what matrices the Galerkin process should be used
10951 
10952   Level: developer
10953 
10954 .seealso: [](ch_matrices), `Mat`, `MatPtAP()`, `MatMatMatMult()`
10955 @*/
10956 PetscErrorCode MatGalerkin(Mat restrct, Mat dA, Mat interpolate, MatReuse reuse, PetscReal fill, Mat *A)
10957 {
10958   IS  zerorows;
10959   Vec diag;
10960 
10961   PetscFunctionBegin;
10962   PetscCheck(reuse != MAT_INPLACE_MATRIX, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Inplace product not supported");
10963   /* Construct the coarse grid matrix */
10964   if (interpolate == restrct) {
10965     PetscCall(MatPtAP(dA, interpolate, reuse, fill, A));
10966   } else {
10967     PetscCall(MatMatMatMult(restrct, dA, interpolate, reuse, fill, A));
10968   }
10969 
10970   /* If the interpolation matrix is not of full rank, A will have zero rows.
10971      This can legitimately happen in the case of non-nested geometric multigrid.
10972      In that event, we set the rows of the matrix to the rows of the identity,
10973      ignoring the equations (as the RHS will also be zero). */
10974 
10975   PetscCall(MatFindZeroRows(*A, &zerorows));
10976 
10977   if (zerorows != NULL) { /* if there are any zero rows */
10978     PetscCall(MatCreateVecs(*A, &diag, NULL));
10979     PetscCall(MatGetDiagonal(*A, diag));
10980     PetscCall(VecISSet(diag, zerorows, 1.0));
10981     PetscCall(MatDiagonalSet(*A, diag, INSERT_VALUES));
10982     PetscCall(VecDestroy(&diag));
10983     PetscCall(ISDestroy(&zerorows));
10984   }
10985   PetscFunctionReturn(PETSC_SUCCESS);
10986 }
10987 
10988 /*@C
10989   MatSetOperation - Allows user to set a matrix operation for any matrix type
10990 
10991   Logically Collective
10992 
10993   Input Parameters:
10994 + mat - the matrix
10995 . op  - the name of the operation
10996 - f   - the function that provides the operation
10997 
10998   Level: developer
10999 
11000   Example Usage:
11001 .vb
11002   extern PetscErrorCode usermult(Mat, Vec, Vec);
11003 
11004   PetscCall(MatCreateXXX(comm, ..., &A));
11005   PetscCall(MatSetOperation(A, MATOP_MULT, (PetscVoidFunction)usermult));
11006 .ve
11007 
11008   Notes:
11009   See the file `include/petscmat.h` for a complete list of matrix
11010   operations, which all have the form MATOP_<OPERATION>, where
11011   <OPERATION> is the name (in all capital letters) of the
11012   user interface routine (e.g., `MatMult()` -> `MATOP_MULT`).
11013 
11014   All user-provided functions (except for `MATOP_DESTROY`) should have the same calling
11015   sequence as the usual matrix interface routines, since they
11016   are intended to be accessed via the usual matrix interface
11017   routines, e.g.,
11018 .vb
11019   MatMult(Mat, Vec, Vec) -> usermult(Mat, Vec, Vec)
11020 .ve
11021 
11022   In particular each function MUST return `PETSC_SUCCESS` on success and
11023   nonzero on failure.
11024 
11025   This routine is distinct from `MatShellSetOperation()` in that it can be called on any matrix type.
11026 
11027 .seealso: [](ch_matrices), `Mat`, `MatGetOperation()`, `MatCreateShell()`, `MatShellSetContext()`, `MatShellSetOperation()`
11028 @*/
11029 PetscErrorCode MatSetOperation(Mat mat, MatOperation op, void (*f)(void))
11030 {
11031   PetscFunctionBegin;
11032   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
11033   if (op == MATOP_VIEW && !mat->ops->viewnative && f != (void (*)(void))(mat->ops->view)) mat->ops->viewnative = mat->ops->view;
11034   (((void (**)(void))mat->ops)[op]) = f;
11035   PetscFunctionReturn(PETSC_SUCCESS);
11036 }
11037 
11038 /*@C
11039   MatGetOperation - Gets a matrix operation for any matrix type.
11040 
11041   Not Collective
11042 
11043   Input Parameters:
11044 + mat - the matrix
11045 - op  - the name of the operation
11046 
11047   Output Parameter:
11048 . f - the function that provides the operation
11049 
11050   Level: developer
11051 
11052   Example Usage:
11053 .vb
11054   PetscErrorCode (*usermult)(Mat, Vec, Vec);
11055 
11056   MatGetOperation(A, MATOP_MULT, (void (**)(void))&usermult);
11057 .ve
11058 
11059   Notes:
11060   See the file include/petscmat.h for a complete list of matrix
11061   operations, which all have the form MATOP_<OPERATION>, where
11062   <OPERATION> is the name (in all capital letters) of the
11063   user interface routine (e.g., `MatMult()` -> `MATOP_MULT`).
11064 
11065   This routine is distinct from `MatShellGetOperation()` in that it can be called on any matrix type.
11066 
11067 .seealso: [](ch_matrices), `Mat`, `MatSetOperation()`, `MatCreateShell()`, `MatShellGetContext()`, `MatShellGetOperation()`
11068 @*/
11069 PetscErrorCode MatGetOperation(Mat mat, MatOperation op, void (**f)(void))
11070 {
11071   PetscFunctionBegin;
11072   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
11073   *f = (((void (**)(void))mat->ops)[op]);
11074   PetscFunctionReturn(PETSC_SUCCESS);
11075 }
11076 
11077 /*@
11078   MatHasOperation - Determines whether the given matrix supports the particular operation.
11079 
11080   Not Collective
11081 
11082   Input Parameters:
11083 + mat - the matrix
11084 - op  - the operation, for example, `MATOP_GET_DIAGONAL`
11085 
11086   Output Parameter:
11087 . has - either `PETSC_TRUE` or `PETSC_FALSE`
11088 
11089   Level: advanced
11090 
11091   Note:
11092   See `MatSetOperation()` for additional discussion on naming convention and usage of `op`.
11093 
11094 .seealso: [](ch_matrices), `Mat`, `MatCreateShell()`, `MatGetOperation()`, `MatSetOperation()`
11095 @*/
11096 PetscErrorCode MatHasOperation(Mat mat, MatOperation op, PetscBool *has)
11097 {
11098   PetscFunctionBegin;
11099   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
11100   PetscAssertPointer(has, 3);
11101   if (mat->ops->hasoperation) {
11102     PetscUseTypeMethod(mat, hasoperation, op, has);
11103   } else {
11104     if (((void **)mat->ops)[op]) *has = PETSC_TRUE;
11105     else {
11106       *has = PETSC_FALSE;
11107       if (op == MATOP_CREATE_SUBMATRIX) {
11108         PetscMPIInt size;
11109 
11110         PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)mat), &size));
11111         if (size == 1) PetscCall(MatHasOperation(mat, MATOP_CREATE_SUBMATRICES, has));
11112       }
11113     }
11114   }
11115   PetscFunctionReturn(PETSC_SUCCESS);
11116 }
11117 
11118 /*@
11119   MatHasCongruentLayouts - Determines whether the rows and columns layouts of the matrix are congruent
11120 
11121   Collective
11122 
11123   Input Parameter:
11124 . mat - the matrix
11125 
11126   Output Parameter:
11127 . cong - either `PETSC_TRUE` or `PETSC_FALSE`
11128 
11129   Level: beginner
11130 
11131 .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatSetSizes()`, `PetscLayout`
11132 @*/
11133 PetscErrorCode MatHasCongruentLayouts(Mat mat, PetscBool *cong)
11134 {
11135   PetscFunctionBegin;
11136   PetscValidHeaderSpecific(mat, MAT_CLASSID, 1);
11137   PetscValidType(mat, 1);
11138   PetscAssertPointer(cong, 2);
11139   if (!mat->rmap || !mat->cmap) {
11140     *cong = mat->rmap == mat->cmap ? PETSC_TRUE : PETSC_FALSE;
11141     PetscFunctionReturn(PETSC_SUCCESS);
11142   }
11143   if (mat->congruentlayouts == PETSC_DECIDE) { /* first time we compare rows and cols layouts */
11144     PetscCall(PetscLayoutSetUp(mat->rmap));
11145     PetscCall(PetscLayoutSetUp(mat->cmap));
11146     PetscCall(PetscLayoutCompare(mat->rmap, mat->cmap, cong));
11147     if (*cong) mat->congruentlayouts = 1;
11148     else mat->congruentlayouts = 0;
11149   } else *cong = mat->congruentlayouts ? PETSC_TRUE : PETSC_FALSE;
11150   PetscFunctionReturn(PETSC_SUCCESS);
11151 }
11152 
11153 PetscErrorCode MatSetInf(Mat A)
11154 {
11155   PetscFunctionBegin;
11156   PetscUseTypeMethod(A, setinf);
11157   PetscFunctionReturn(PETSC_SUCCESS);
11158 }
11159 
11160 /*@C
11161   MatCreateGraph - create a scalar matrix (that is a matrix with one vertex for each block vertex in the original matrix), for use in graph algorithms
11162   and possibly removes small values from the graph structure.
11163 
11164   Collective
11165 
11166   Input Parameters:
11167 + A      - the matrix
11168 . sym    - `PETSC_TRUE` indicates that the graph should be symmetrized
11169 . scale  - `PETSC_TRUE` indicates that the graph edge weights should be symmetrically scaled with the diagonal entry
11170 - filter - filter value - < 0: does nothing; == 0: removes only 0.0 entries; otherwise: removes entries with abs(entries) <= value
11171 
11172   Output Parameter:
11173 . graph - the resulting graph
11174 
11175   Level: advanced
11176 
11177 .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `PCGAMG`
11178 @*/
11179 PetscErrorCode MatCreateGraph(Mat A, PetscBool sym, PetscBool scale, PetscReal filter, Mat *graph)
11180 {
11181   PetscFunctionBegin;
11182   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
11183   PetscValidType(A, 1);
11184   PetscValidLogicalCollectiveBool(A, scale, 3);
11185   PetscAssertPointer(graph, 5);
11186   PetscUseTypeMethod(A, creategraph, sym, scale, filter, graph);
11187   PetscFunctionReturn(PETSC_SUCCESS);
11188 }
11189 
11190 /*@
11191   MatEliminateZeros - eliminate the nondiagonal zero entries in place from the nonzero structure of a sparse `Mat` in place,
11192   meaning the same memory is used for the matrix, and no new memory is allocated.
11193 
11194   Collective
11195 
11196   Input Parameters:
11197 + A    - the matrix
11198 - keep - if for a given row of `A`, the diagonal coefficient is zero, indicates whether it should be left in the structure or eliminated as well
11199 
11200   Level: intermediate
11201 
11202   Developer Note:
11203   The entries in the sparse matrix data structure are shifted to fill in the unneeded locations in the data. Thus the end
11204   of the arrays in the data structure are unneeded.
11205 
11206 .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateGraph()`, `MatFilter()`
11207 @*/
11208 PetscErrorCode MatEliminateZeros(Mat A, PetscBool keep)
11209 {
11210   PetscFunctionBegin;
11211   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
11212   PetscUseTypeMethod(A, eliminatezeros, keep);
11213   PetscFunctionReturn(PETSC_SUCCESS);
11214 }
11215