1 /* 2 This is where the abstract matrix operations are defined 3 Portions of this code are under: 4 Copyright (c) 2022 Advanced Micro Devices, Inc. All rights reserved. 5 */ 6 7 #include <petsc/private/matimpl.h> /*I "petscmat.h" I*/ 8 #include <petsc/private/isimpl.h> 9 #include <petsc/private/vecimpl.h> 10 11 /* Logging support */ 12 PetscClassId MAT_CLASSID; 13 PetscClassId MAT_COLORING_CLASSID; 14 PetscClassId MAT_FDCOLORING_CLASSID; 15 PetscClassId MAT_TRANSPOSECOLORING_CLASSID; 16 17 PetscLogEvent MAT_Mult, MAT_MultAdd, MAT_MultTranspose; 18 PetscLogEvent MAT_MultTransposeAdd, MAT_Solve, MAT_Solves, MAT_SolveAdd, MAT_SolveTranspose, MAT_MatSolve, MAT_MatTrSolve; 19 PetscLogEvent MAT_SolveTransposeAdd, MAT_SOR, MAT_ForwardSolve, MAT_BackwardSolve, MAT_LUFactor, MAT_LUFactorSymbolic; 20 PetscLogEvent MAT_LUFactorNumeric, MAT_CholeskyFactor, MAT_CholeskyFactorSymbolic, MAT_CholeskyFactorNumeric, MAT_ILUFactor; 21 PetscLogEvent MAT_ILUFactorSymbolic, MAT_ICCFactorSymbolic, MAT_Copy, MAT_Convert, MAT_Scale, MAT_AssemblyBegin; 22 PetscLogEvent MAT_QRFactorNumeric, MAT_QRFactorSymbolic, MAT_QRFactor; 23 PetscLogEvent MAT_AssemblyEnd, MAT_SetValues, MAT_GetValues, MAT_GetRow, MAT_GetRowIJ, MAT_CreateSubMats, MAT_GetOrdering, MAT_RedundantMat, MAT_GetSeqNonzeroStructure; 24 PetscLogEvent MAT_IncreaseOverlap, MAT_Partitioning, MAT_PartitioningND, MAT_Coarsen, MAT_ZeroEntries, MAT_Load, MAT_View, MAT_AXPY, MAT_FDColoringCreate; 25 PetscLogEvent MAT_FDColoringSetUp, MAT_FDColoringApply, MAT_Transpose, MAT_FDColoringFunction, MAT_CreateSubMat; 26 PetscLogEvent MAT_TransposeColoringCreate; 27 PetscLogEvent MAT_MatMult, MAT_MatMultSymbolic, MAT_MatMultNumeric; 28 PetscLogEvent MAT_PtAP, MAT_PtAPSymbolic, MAT_PtAPNumeric, MAT_RARt, MAT_RARtSymbolic, MAT_RARtNumeric; 29 PetscLogEvent MAT_MatTransposeMult, MAT_MatTransposeMultSymbolic, MAT_MatTransposeMultNumeric; 30 PetscLogEvent MAT_TransposeMatMult, MAT_TransposeMatMultSymbolic, MAT_TransposeMatMultNumeric; 31 PetscLogEvent MAT_MatMatMult, MAT_MatMatMultSymbolic, MAT_MatMatMultNumeric; 32 PetscLogEvent MAT_MultHermitianTranspose, MAT_MultHermitianTransposeAdd; 33 PetscLogEvent MAT_Getsymtransreduced, MAT_GetBrowsOfAcols; 34 PetscLogEvent MAT_GetBrowsOfAocols, MAT_Getlocalmat, MAT_Getlocalmatcondensed, MAT_Seqstompi, MAT_Seqstompinum, MAT_Seqstompisym; 35 PetscLogEvent MAT_GetMultiProcBlock; 36 PetscLogEvent MAT_CUSPARSECopyToGPU, MAT_CUSPARSECopyFromGPU, MAT_CUSPARSEGenerateTranspose, MAT_CUSPARSESolveAnalysis; 37 PetscLogEvent MAT_HIPSPARSECopyToGPU, MAT_HIPSPARSECopyFromGPU, MAT_HIPSPARSEGenerateTranspose, MAT_HIPSPARSESolveAnalysis; 38 PetscLogEvent MAT_PreallCOO, MAT_SetVCOO; 39 PetscLogEvent MAT_SetValuesBatch; 40 PetscLogEvent MAT_ViennaCLCopyToGPU; 41 PetscLogEvent MAT_CUDACopyToGPU; 42 PetscLogEvent MAT_DenseCopyToGPU, MAT_DenseCopyFromGPU; 43 PetscLogEvent MAT_Merge, MAT_Residual, MAT_SetRandom; 44 PetscLogEvent MAT_FactorFactS, MAT_FactorInvS; 45 PetscLogEvent MATCOLORING_Apply, MATCOLORING_Comm, MATCOLORING_Local, MATCOLORING_ISCreate, MATCOLORING_SetUp, MATCOLORING_Weights; 46 PetscLogEvent MAT_H2Opus_Build, MAT_H2Opus_Compress, MAT_H2Opus_Orthog, MAT_H2Opus_LR; 47 48 const char *const MatFactorTypes[] = {"NONE", "LU", "CHOLESKY", "ILU", "ICC", "ILUDT", "QR", "MatFactorType", "MAT_FACTOR_", NULL}; 49 50 /*@ 51 MatSetRandom - Sets all components of a matrix to random numbers. 52 53 Logically Collective 54 55 Input Parameters: 56 + x - the matrix 57 - rctx - the `PetscRandom` object, formed by `PetscRandomCreate()`, or `NULL` and 58 it will create one internally. 59 60 Example: 61 .vb 62 PetscRandomCreate(PETSC_COMM_WORLD,&rctx); 63 MatSetRandom(x,rctx); 64 PetscRandomDestroy(rctx); 65 .ve 66 67 Level: intermediate 68 69 Notes: 70 For sparse matrices that have been preallocated but not been assembled, it randomly selects appropriate locations, 71 72 for sparse matrices that already have nonzero locations, it fills the locations with random numbers. 73 74 It generates an error if used on unassembled sparse matrices that have not been preallocated. 75 76 .seealso: [](ch_matrices), `Mat`, `PetscRandom`, `PetscRandomCreate()`, `MatZeroEntries()`, `MatSetValues()`, `PetscRandomDestroy()` 77 @*/ 78 PetscErrorCode MatSetRandom(Mat x, PetscRandom rctx) 79 { 80 PetscRandom randObj = NULL; 81 82 PetscFunctionBegin; 83 PetscValidHeaderSpecific(x, MAT_CLASSID, 1); 84 if (rctx) PetscValidHeaderSpecific(rctx, PETSC_RANDOM_CLASSID, 2); 85 PetscValidType(x, 1); 86 MatCheckPreallocated(x, 1); 87 88 if (!rctx) { 89 MPI_Comm comm; 90 PetscCall(PetscObjectGetComm((PetscObject)x, &comm)); 91 PetscCall(PetscRandomCreate(comm, &randObj)); 92 PetscCall(PetscRandomSetType(randObj, x->defaultrandtype)); 93 PetscCall(PetscRandomSetFromOptions(randObj)); 94 rctx = randObj; 95 } 96 PetscCall(PetscLogEventBegin(MAT_SetRandom, x, rctx, 0, 0)); 97 PetscUseTypeMethod(x, setrandom, rctx); 98 PetscCall(PetscLogEventEnd(MAT_SetRandom, x, rctx, 0, 0)); 99 100 PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY)); 101 PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY)); 102 PetscCall(PetscRandomDestroy(&randObj)); 103 PetscFunctionReturn(PETSC_SUCCESS); 104 } 105 106 /*@ 107 MatFactorGetErrorZeroPivot - returns the pivot value that was determined to be zero and the row it occurred in 108 109 Logically Collective 110 111 Input Parameter: 112 . mat - the factored matrix 113 114 Output Parameters: 115 + pivot - the pivot value computed 116 - row - the row that the zero pivot occurred. This row value must be interpreted carefully due to row reorderings and which processes 117 the share the matrix 118 119 Level: advanced 120 121 Notes: 122 This routine does not work for factorizations done with external packages. 123 124 This routine should only be called if `MatGetFactorError()` returns a value of `MAT_FACTOR_NUMERIC_ZEROPIVOT` 125 126 This can also be called on non-factored matrices that come from, for example, matrices used in SOR. 127 128 .seealso: [](ch_matrices), `Mat`, `MatZeroEntries()`, `MatFactor()`, `MatGetFactor()`, 129 `MatLUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`, `MatFactorClearError()`, 130 `MAT_FACTOR_NUMERIC_ZEROPIVOT` 131 @*/ 132 PetscErrorCode MatFactorGetErrorZeroPivot(Mat mat, PetscReal *pivot, PetscInt *row) 133 { 134 PetscFunctionBegin; 135 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 136 PetscAssertPointer(pivot, 2); 137 PetscAssertPointer(row, 3); 138 *pivot = mat->factorerror_zeropivot_value; 139 *row = mat->factorerror_zeropivot_row; 140 PetscFunctionReturn(PETSC_SUCCESS); 141 } 142 143 /*@ 144 MatFactorGetError - gets the error code from a factorization 145 146 Logically Collective 147 148 Input Parameter: 149 . mat - the factored matrix 150 151 Output Parameter: 152 . err - the error code 153 154 Level: advanced 155 156 Note: 157 This can also be called on non-factored matrices that come from, for example, matrices used in SOR. 158 159 .seealso: [](ch_matrices), `Mat`, `MatZeroEntries()`, `MatFactor()`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`, 160 `MatFactorClearError()`, `MatFactorGetErrorZeroPivot()`, `MatFactorError` 161 @*/ 162 PetscErrorCode MatFactorGetError(Mat mat, MatFactorError *err) 163 { 164 PetscFunctionBegin; 165 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 166 PetscAssertPointer(err, 2); 167 *err = mat->factorerrortype; 168 PetscFunctionReturn(PETSC_SUCCESS); 169 } 170 171 /*@ 172 MatFactorClearError - clears the error code in a factorization 173 174 Logically Collective 175 176 Input Parameter: 177 . mat - the factored matrix 178 179 Level: developer 180 181 Note: 182 This can also be called on non-factored matrices that come from, for example, matrices used in SOR. 183 184 .seealso: [](ch_matrices), `Mat`, `MatZeroEntries()`, `MatFactor()`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatCholeskyFactorSymbolic()`, `MatFactorGetError()`, `MatFactorGetErrorZeroPivot()`, 185 `MatGetErrorCode()`, `MatFactorError` 186 @*/ 187 PetscErrorCode MatFactorClearError(Mat mat) 188 { 189 PetscFunctionBegin; 190 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 191 mat->factorerrortype = MAT_FACTOR_NOERROR; 192 mat->factorerror_zeropivot_value = 0.0; 193 mat->factorerror_zeropivot_row = 0; 194 PetscFunctionReturn(PETSC_SUCCESS); 195 } 196 197 PETSC_INTERN PetscErrorCode MatFindNonzeroRowsOrCols_Basic(Mat mat, PetscBool cols, PetscReal tol, IS *nonzero) 198 { 199 Vec r, l; 200 const PetscScalar *al; 201 PetscInt i, nz, gnz, N, n; 202 203 PetscFunctionBegin; 204 PetscCall(MatCreateVecs(mat, &r, &l)); 205 if (!cols) { /* nonzero rows */ 206 PetscCall(MatGetSize(mat, &N, NULL)); 207 PetscCall(MatGetLocalSize(mat, &n, NULL)); 208 PetscCall(VecSet(l, 0.0)); 209 PetscCall(VecSetRandom(r, NULL)); 210 PetscCall(MatMult(mat, r, l)); 211 PetscCall(VecGetArrayRead(l, &al)); 212 } else { /* nonzero columns */ 213 PetscCall(MatGetSize(mat, NULL, &N)); 214 PetscCall(MatGetLocalSize(mat, NULL, &n)); 215 PetscCall(VecSet(r, 0.0)); 216 PetscCall(VecSetRandom(l, NULL)); 217 PetscCall(MatMultTranspose(mat, l, r)); 218 PetscCall(VecGetArrayRead(r, &al)); 219 } 220 if (tol <= 0.0) { 221 for (i = 0, nz = 0; i < n; i++) 222 if (al[i] != 0.0) nz++; 223 } else { 224 for (i = 0, nz = 0; i < n; i++) 225 if (PetscAbsScalar(al[i]) > tol) nz++; 226 } 227 PetscCall(MPIU_Allreduce(&nz, &gnz, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)mat))); 228 if (gnz != N) { 229 PetscInt *nzr; 230 PetscCall(PetscMalloc1(nz, &nzr)); 231 if (nz) { 232 if (tol < 0) { 233 for (i = 0, nz = 0; i < n; i++) 234 if (al[i] != 0.0) nzr[nz++] = i; 235 } else { 236 for (i = 0, nz = 0; i < n; i++) 237 if (PetscAbsScalar(al[i]) > tol) nzr[nz++] = i; 238 } 239 } 240 PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)mat), nz, nzr, PETSC_OWN_POINTER, nonzero)); 241 } else *nonzero = NULL; 242 if (!cols) { /* nonzero rows */ 243 PetscCall(VecRestoreArrayRead(l, &al)); 244 } else { 245 PetscCall(VecRestoreArrayRead(r, &al)); 246 } 247 PetscCall(VecDestroy(&l)); 248 PetscCall(VecDestroy(&r)); 249 PetscFunctionReturn(PETSC_SUCCESS); 250 } 251 252 /*@ 253 MatFindNonzeroRows - Locate all rows that are not completely zero in the matrix 254 255 Input Parameter: 256 . mat - the matrix 257 258 Output Parameter: 259 . keptrows - the rows that are not completely zero 260 261 Level: intermediate 262 263 Note: 264 `keptrows` is set to `NULL` if all rows are nonzero. 265 266 .seealso: [](ch_matrices), `Mat`, `MatFindZeroRows()` 267 @*/ 268 PetscErrorCode MatFindNonzeroRows(Mat mat, IS *keptrows) 269 { 270 PetscFunctionBegin; 271 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 272 PetscValidType(mat, 1); 273 PetscAssertPointer(keptrows, 2); 274 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 275 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 276 if (mat->ops->findnonzerorows) PetscUseTypeMethod(mat, findnonzerorows, keptrows); 277 else PetscCall(MatFindNonzeroRowsOrCols_Basic(mat, PETSC_FALSE, 0.0, keptrows)); 278 PetscFunctionReturn(PETSC_SUCCESS); 279 } 280 281 /*@ 282 MatFindZeroRows - Locate all rows that are completely zero in the matrix 283 284 Input Parameter: 285 . mat - the matrix 286 287 Output Parameter: 288 . zerorows - the rows that are completely zero 289 290 Level: intermediate 291 292 Note: 293 `zerorows` is set to `NULL` if no rows are zero. 294 295 .seealso: [](ch_matrices), `Mat`, `MatFindNonzeroRows()` 296 @*/ 297 PetscErrorCode MatFindZeroRows(Mat mat, IS *zerorows) 298 { 299 IS keptrows; 300 PetscInt m, n; 301 302 PetscFunctionBegin; 303 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 304 PetscValidType(mat, 1); 305 PetscAssertPointer(zerorows, 2); 306 PetscCall(MatFindNonzeroRows(mat, &keptrows)); 307 /* MatFindNonzeroRows sets keptrows to NULL if there are no zero rows. 308 In keeping with this convention, we set zerorows to NULL if there are no zero 309 rows. */ 310 if (keptrows == NULL) { 311 *zerorows = NULL; 312 } else { 313 PetscCall(MatGetOwnershipRange(mat, &m, &n)); 314 PetscCall(ISComplement(keptrows, m, n, zerorows)); 315 PetscCall(ISDestroy(&keptrows)); 316 } 317 PetscFunctionReturn(PETSC_SUCCESS); 318 } 319 320 /*@ 321 MatGetDiagonalBlock - Returns the part of the matrix associated with the on-process coupling 322 323 Not Collective 324 325 Input Parameter: 326 . A - the matrix 327 328 Output Parameter: 329 . a - the diagonal part (which is a SEQUENTIAL matrix) 330 331 Level: advanced 332 333 Notes: 334 See `MatCreateAIJ()` for more information on the "diagonal part" of the matrix. 335 336 Use caution, as the reference count on the returned matrix is not incremented and it is used as part of `A`'s normal operation. 337 338 .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()`, `MATAIJ`, `MATBAIJ`, `MATSBAIJ` 339 @*/ 340 PetscErrorCode MatGetDiagonalBlock(Mat A, Mat *a) 341 { 342 PetscFunctionBegin; 343 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 344 PetscValidType(A, 1); 345 PetscAssertPointer(a, 2); 346 PetscCheck(!A->factortype, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 347 if (A->ops->getdiagonalblock) PetscUseTypeMethod(A, getdiagonalblock, a); 348 else { 349 PetscMPIInt size; 350 351 PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 352 PetscCheck(size == 1, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for parallel matrix type %s", ((PetscObject)A)->type_name); 353 *a = A; 354 } 355 PetscFunctionReturn(PETSC_SUCCESS); 356 } 357 358 /*@ 359 MatGetTrace - Gets the trace of a matrix. The sum of the diagonal entries. 360 361 Collective 362 363 Input Parameter: 364 . mat - the matrix 365 366 Output Parameter: 367 . trace - the sum of the diagonal entries 368 369 Level: advanced 370 371 .seealso: [](ch_matrices), `Mat` 372 @*/ 373 PetscErrorCode MatGetTrace(Mat mat, PetscScalar *trace) 374 { 375 Vec diag; 376 377 PetscFunctionBegin; 378 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 379 PetscAssertPointer(trace, 2); 380 PetscCall(MatCreateVecs(mat, &diag, NULL)); 381 PetscCall(MatGetDiagonal(mat, diag)); 382 PetscCall(VecSum(diag, trace)); 383 PetscCall(VecDestroy(&diag)); 384 PetscFunctionReturn(PETSC_SUCCESS); 385 } 386 387 /*@ 388 MatRealPart - Zeros out the imaginary part of the matrix 389 390 Logically Collective 391 392 Input Parameter: 393 . mat - the matrix 394 395 Level: advanced 396 397 .seealso: [](ch_matrices), `Mat`, `MatImaginaryPart()` 398 @*/ 399 PetscErrorCode MatRealPart(Mat mat) 400 { 401 PetscFunctionBegin; 402 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 403 PetscValidType(mat, 1); 404 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 405 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 406 MatCheckPreallocated(mat, 1); 407 PetscUseTypeMethod(mat, realpart); 408 PetscFunctionReturn(PETSC_SUCCESS); 409 } 410 411 /*@C 412 MatGetGhosts - Get the global indices of all ghost nodes defined by the sparse matrix 413 414 Collective 415 416 Input Parameter: 417 . mat - the matrix 418 419 Output Parameters: 420 + nghosts - number of ghosts (for `MATBAIJ` and `MATSBAIJ` matrices there is one ghost for each matrix block) 421 - ghosts - the global indices of the ghost points 422 423 Level: advanced 424 425 Note: 426 `nghosts` and `ghosts` are suitable to pass into `VecCreateGhost()` or `VecCreateGhostBlock()` 427 428 .seealso: [](ch_matrices), `Mat`, `VecCreateGhost()`, `VecCreateGhostBlock()` 429 @*/ 430 PetscErrorCode MatGetGhosts(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 431 { 432 PetscFunctionBegin; 433 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 434 PetscValidType(mat, 1); 435 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 436 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 437 if (mat->ops->getghosts) PetscUseTypeMethod(mat, getghosts, nghosts, ghosts); 438 else { 439 if (nghosts) *nghosts = 0; 440 if (ghosts) *ghosts = NULL; 441 } 442 PetscFunctionReturn(PETSC_SUCCESS); 443 } 444 445 /*@ 446 MatImaginaryPart - Moves the imaginary part of the matrix to the real part and zeros the imaginary part 447 448 Logically Collective 449 450 Input Parameter: 451 . mat - the matrix 452 453 Level: advanced 454 455 .seealso: [](ch_matrices), `Mat`, `MatRealPart()` 456 @*/ 457 PetscErrorCode MatImaginaryPart(Mat mat) 458 { 459 PetscFunctionBegin; 460 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 461 PetscValidType(mat, 1); 462 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 463 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 464 MatCheckPreallocated(mat, 1); 465 PetscUseTypeMethod(mat, imaginarypart); 466 PetscFunctionReturn(PETSC_SUCCESS); 467 } 468 469 /*@ 470 MatMissingDiagonal - Determine if sparse matrix is missing a diagonal entry (or block entry for `MATBAIJ` and `MATSBAIJ` matrices) in the nonzero structure 471 472 Not Collective 473 474 Input Parameter: 475 . mat - the matrix 476 477 Output Parameters: 478 + missing - is any diagonal entry missing 479 - dd - first diagonal entry that is missing (optional) on this process 480 481 Level: advanced 482 483 Note: 484 This does not return diagonal entries that are in the nonzero structure but happen to have a zero numerical value 485 486 .seealso: [](ch_matrices), `Mat` 487 @*/ 488 PetscErrorCode MatMissingDiagonal(Mat mat, PetscBool *missing, PetscInt *dd) 489 { 490 PetscFunctionBegin; 491 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 492 PetscValidType(mat, 1); 493 PetscAssertPointer(missing, 2); 494 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix %s", ((PetscObject)mat)->type_name); 495 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 496 PetscUseTypeMethod(mat, missingdiagonal, missing, dd); 497 PetscFunctionReturn(PETSC_SUCCESS); 498 } 499 500 // PetscClangLinter pragma disable: -fdoc-section-header-unknown 501 /*@C 502 MatGetRow - Gets a row of a matrix. You MUST call `MatRestoreRow()` 503 for each row that you get to ensure that your application does 504 not bleed memory. 505 506 Not Collective 507 508 Input Parameters: 509 + mat - the matrix 510 - row - the row to get 511 512 Output Parameters: 513 + ncols - if not `NULL`, the number of nonzeros in `row` 514 . cols - if not `NULL`, the column numbers 515 - vals - if not `NULL`, the numerical values 516 517 Level: advanced 518 519 Notes: 520 This routine is provided for people who need to have direct access 521 to the structure of a matrix. We hope that we provide enough 522 high-level matrix routines that few users will need it. 523 524 `MatGetRow()` always returns 0-based column indices, regardless of 525 whether the internal representation is 0-based (default) or 1-based. 526 527 For better efficiency, set `cols` and/or `vals` to `NULL` if you do 528 not wish to extract these quantities. 529 530 The user can only examine the values extracted with `MatGetRow()`; 531 the values CANNOT be altered. To change the matrix entries, one 532 must use `MatSetValues()`. 533 534 You can only have one call to `MatGetRow()` outstanding for a particular 535 matrix at a time, per processor. `MatGetRow()` can only obtain rows 536 associated with the given processor, it cannot get rows from the 537 other processors; for that we suggest using `MatCreateSubMatrices()`, then 538 `MatGetRow()` on the submatrix. The row index passed to `MatGetRow()` 539 is in the global number of rows. 540 541 Use `MatGetRowIJ()` and `MatRestoreRowIJ()` to access all the local indices of the sparse matrix. 542 543 Use `MatSeqAIJGetArray()` and similar functions to access the numerical values for certain matrix types directly. 544 545 Fortran Note: 546 The calling sequence is 547 .vb 548 MatGetRow(matrix,row,ncols,cols,values,ierr) 549 Mat matrix (input) 550 integer row (input) 551 integer ncols (output) 552 integer cols(maxcols) (output) 553 double precision (or double complex) values(maxcols) output 554 .ve 555 where maxcols >= maximum nonzeros in any row of the matrix. 556 557 .seealso: [](ch_matrices), `Mat`, `MatRestoreRow()`, `MatSetValues()`, `MatGetValues()`, `MatCreateSubMatrices()`, `MatGetDiagonal()`, `MatGetRowIJ()`, `MatRestoreRowIJ()` 558 @*/ 559 PetscErrorCode MatGetRow(Mat mat, PetscInt row, PetscInt *ncols, const PetscInt *cols[], const PetscScalar *vals[]) 560 { 561 PetscInt incols; 562 563 PetscFunctionBegin; 564 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 565 PetscValidType(mat, 1); 566 PetscCheck(mat->assembled, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 567 PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 568 MatCheckPreallocated(mat, 1); 569 PetscCheck(row >= mat->rmap->rstart && row < mat->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Only for local rows, %" PetscInt_FMT " not in [%" PetscInt_FMT ",%" PetscInt_FMT ")", row, mat->rmap->rstart, mat->rmap->rend); 570 PetscCall(PetscLogEventBegin(MAT_GetRow, mat, 0, 0, 0)); 571 PetscUseTypeMethod(mat, getrow, row, &incols, (PetscInt **)cols, (PetscScalar **)vals); 572 if (ncols) *ncols = incols; 573 PetscCall(PetscLogEventEnd(MAT_GetRow, mat, 0, 0, 0)); 574 PetscFunctionReturn(PETSC_SUCCESS); 575 } 576 577 /*@ 578 MatConjugate - replaces the matrix values with their complex conjugates 579 580 Logically Collective 581 582 Input Parameter: 583 . mat - the matrix 584 585 Level: advanced 586 587 .seealso: [](ch_matrices), `Mat`, `MatRealPart()`, `MatImaginaryPart()`, `VecConjugate()`, `MatTranspose()` 588 @*/ 589 PetscErrorCode MatConjugate(Mat mat) 590 { 591 PetscFunctionBegin; 592 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 593 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 594 if (PetscDefined(USE_COMPLEX) && mat->hermitian != PETSC_BOOL3_TRUE) { 595 PetscUseTypeMethod(mat, conjugate); 596 PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 597 } 598 PetscFunctionReturn(PETSC_SUCCESS); 599 } 600 601 /*@C 602 MatRestoreRow - Frees any temporary space allocated by `MatGetRow()`. 603 604 Not Collective 605 606 Input Parameters: 607 + mat - the matrix 608 . row - the row to get 609 . ncols - the number of nonzeros 610 . cols - the columns of the nonzeros 611 - vals - if nonzero the column values 612 613 Level: advanced 614 615 Notes: 616 This routine should be called after you have finished examining the entries. 617 618 This routine zeros out `ncols`, `cols`, and `vals`. This is to prevent accidental 619 us of the array after it has been restored. If you pass `NULL`, it will 620 not zero the pointers. Use of `cols` or `vals` after `MatRestoreRow()` is invalid. 621 622 Fortran Notes: 623 The calling sequence is 624 .vb 625 MatRestoreRow(matrix,row,ncols,cols,values,ierr) 626 Mat matrix (input) 627 integer row (input) 628 integer ncols (output) 629 integer cols(maxcols) (output) 630 double precision (or double complex) values(maxcols) output 631 .ve 632 Where maxcols >= maximum nonzeros in any row of the matrix. 633 634 In Fortran `MatRestoreRow()` MUST be called after `MatGetRow()` 635 before another call to `MatGetRow()` can be made. 636 637 .seealso: [](ch_matrices), `Mat`, `MatGetRow()` 638 @*/ 639 PetscErrorCode MatRestoreRow(Mat mat, PetscInt row, PetscInt *ncols, const PetscInt *cols[], const PetscScalar *vals[]) 640 { 641 PetscFunctionBegin; 642 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 643 if (ncols) PetscAssertPointer(ncols, 3); 644 PetscCheck(mat->assembled, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 645 if (!mat->ops->restorerow) PetscFunctionReturn(PETSC_SUCCESS); 646 PetscUseTypeMethod(mat, restorerow, row, ncols, (PetscInt **)cols, (PetscScalar **)vals); 647 if (ncols) *ncols = 0; 648 if (cols) *cols = NULL; 649 if (vals) *vals = NULL; 650 PetscFunctionReturn(PETSC_SUCCESS); 651 } 652 653 /*@ 654 MatGetRowUpperTriangular - Sets a flag to enable calls to `MatGetRow()` for matrix in `MATSBAIJ` format. 655 You should call `MatRestoreRowUpperTriangular()` after calling` MatGetRow()` and `MatRestoreRow()` to disable the flag. 656 657 Not Collective 658 659 Input Parameter: 660 . mat - the matrix 661 662 Level: advanced 663 664 Note: 665 The flag is to ensure that users are aware that `MatGetRow()` only provides the upper triangular part of the row for the matrices in `MATSBAIJ` format. 666 667 .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MatRestoreRowUpperTriangular()` 668 @*/ 669 PetscErrorCode MatGetRowUpperTriangular(Mat mat) 670 { 671 PetscFunctionBegin; 672 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 673 PetscValidType(mat, 1); 674 PetscCheck(mat->assembled, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 675 PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 676 MatCheckPreallocated(mat, 1); 677 if (!mat->ops->getrowuppertriangular) PetscFunctionReturn(PETSC_SUCCESS); 678 PetscUseTypeMethod(mat, getrowuppertriangular); 679 PetscFunctionReturn(PETSC_SUCCESS); 680 } 681 682 /*@ 683 MatRestoreRowUpperTriangular - Disable calls to `MatGetRow()` for matrix in `MATSBAIJ` format. 684 685 Not Collective 686 687 Input Parameter: 688 . mat - the matrix 689 690 Level: advanced 691 692 Note: 693 This routine should be called after you have finished calls to `MatGetRow()` and `MatRestoreRow()`. 694 695 .seealso: [](ch_matrices), `Mat`, `MATSBAIJ`, `MatGetRowUpperTriangular()` 696 @*/ 697 PetscErrorCode MatRestoreRowUpperTriangular(Mat mat) 698 { 699 PetscFunctionBegin; 700 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 701 PetscValidType(mat, 1); 702 PetscCheck(mat->assembled, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 703 PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 704 MatCheckPreallocated(mat, 1); 705 if (!mat->ops->restorerowuppertriangular) PetscFunctionReturn(PETSC_SUCCESS); 706 PetscUseTypeMethod(mat, restorerowuppertriangular); 707 PetscFunctionReturn(PETSC_SUCCESS); 708 } 709 710 /*@C 711 MatSetOptionsPrefix - Sets the prefix used for searching for all 712 `Mat` options in the database. 713 714 Logically Collective 715 716 Input Parameters: 717 + A - the matrix 718 - prefix - the prefix to prepend to all option names 719 720 Level: advanced 721 722 Notes: 723 A hyphen (-) must NOT be given at the beginning of the prefix name. 724 The first character of all runtime options is AUTOMATICALLY the hyphen. 725 726 This is NOT used for options for the factorization of the matrix. Normally the 727 prefix is automatically passed in from the PC calling the factorization. To set 728 it directly use `MatSetOptionsPrefixFactor()` 729 730 .seealso: [](ch_matrices), `Mat`, `MatSetFromOptions()`, `MatSetOptionsPrefixFactor()` 731 @*/ 732 PetscErrorCode MatSetOptionsPrefix(Mat A, const char prefix[]) 733 { 734 PetscFunctionBegin; 735 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 736 PetscCall(PetscObjectSetOptionsPrefix((PetscObject)A, prefix)); 737 PetscFunctionReturn(PETSC_SUCCESS); 738 } 739 740 /*@C 741 MatSetOptionsPrefixFactor - Sets the prefix used for searching for all matrix factor options in the database for 742 for matrices created with `MatGetFactor()` 743 744 Logically Collective 745 746 Input Parameters: 747 + A - the matrix 748 - prefix - the prefix to prepend to all option names for the factored matrix 749 750 Level: developer 751 752 Notes: 753 A hyphen (-) must NOT be given at the beginning of the prefix name. 754 The first character of all runtime options is AUTOMATICALLY the hyphen. 755 756 Normally the prefix is automatically passed in from the `PC` calling the factorization. To set 757 it directly when not using `KSP`/`PC` use `MatSetOptionsPrefixFactor()` 758 759 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatSetFromOptions()`, `MatSetOptionsPrefix()`, `MatAppendOptionsPrefixFactor()` 760 @*/ 761 PetscErrorCode MatSetOptionsPrefixFactor(Mat A, const char prefix[]) 762 { 763 PetscFunctionBegin; 764 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 765 if (prefix) { 766 PetscAssertPointer(prefix, 2); 767 PetscCheck(prefix[0] != '-', PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Options prefix should not begin with a hyphen"); 768 if (prefix != A->factorprefix) { 769 PetscCall(PetscFree(A->factorprefix)); 770 PetscCall(PetscStrallocpy(prefix, &A->factorprefix)); 771 } 772 } else PetscCall(PetscFree(A->factorprefix)); 773 PetscFunctionReturn(PETSC_SUCCESS); 774 } 775 776 /*@C 777 MatAppendOptionsPrefixFactor - Appends to the prefix used for searching for all matrix factor options in the database for 778 for matrices created with `MatGetFactor()` 779 780 Logically Collective 781 782 Input Parameters: 783 + A - the matrix 784 - prefix - the prefix to prepend to all option names for the factored matrix 785 786 Level: developer 787 788 Notes: 789 A hyphen (-) must NOT be given at the beginning of the prefix name. 790 The first character of all runtime options is AUTOMATICALLY the hyphen. 791 792 Normally the prefix is automatically passed in from the `PC` calling the factorization. To set 793 it directly when not using `KSP`/`PC` use `MatAppendOptionsPrefixFactor()` 794 795 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `PetscOptionsCreate()`, `PetscOptionsDestroy()`, `PetscObjectSetOptionsPrefix()`, `PetscObjectPrependOptionsPrefix()`, 796 `PetscObjectGetOptionsPrefix()`, `TSAppendOptionsPrefix()`, `SNESAppendOptionsPrefix()`, `KSPAppendOptionsPrefix()`, `MatSetOptionsPrefixFactor()`, 797 `MatSetOptionsPrefix()` 798 @*/ 799 PetscErrorCode MatAppendOptionsPrefixFactor(Mat A, const char prefix[]) 800 { 801 size_t len1, len2, new_len; 802 803 PetscFunctionBegin; 804 PetscValidHeader(A, 1); 805 if (!prefix) PetscFunctionReturn(PETSC_SUCCESS); 806 if (!A->factorprefix) { 807 PetscCall(MatSetOptionsPrefixFactor(A, prefix)); 808 PetscFunctionReturn(PETSC_SUCCESS); 809 } 810 PetscCheck(prefix[0] != '-', PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Options prefix should not begin with a hyphen"); 811 812 PetscCall(PetscStrlen(A->factorprefix, &len1)); 813 PetscCall(PetscStrlen(prefix, &len2)); 814 new_len = len1 + len2 + 1; 815 PetscCall(PetscRealloc(new_len * sizeof(*(A->factorprefix)), &A->factorprefix)); 816 PetscCall(PetscStrncpy(A->factorprefix + len1, prefix, len2 + 1)); 817 PetscFunctionReturn(PETSC_SUCCESS); 818 } 819 820 /*@C 821 MatAppendOptionsPrefix - Appends to the prefix used for searching for all 822 matrix options in the database. 823 824 Logically Collective 825 826 Input Parameters: 827 + A - the matrix 828 - prefix - the prefix to prepend to all option names 829 830 Level: advanced 831 832 Note: 833 A hyphen (-) must NOT be given at the beginning of the prefix name. 834 The first character of all runtime options is AUTOMATICALLY the hyphen. 835 836 .seealso: [](ch_matrices), `Mat`, `MatGetOptionsPrefix()`, `MatAppendOptionsPrefixFactor()`, `MatSetOptionsPrefix()` 837 @*/ 838 PetscErrorCode MatAppendOptionsPrefix(Mat A, const char prefix[]) 839 { 840 PetscFunctionBegin; 841 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 842 PetscCall(PetscObjectAppendOptionsPrefix((PetscObject)A, prefix)); 843 PetscFunctionReturn(PETSC_SUCCESS); 844 } 845 846 /*@C 847 MatGetOptionsPrefix - Gets the prefix used for searching for all 848 matrix options in the database. 849 850 Not Collective 851 852 Input Parameter: 853 . A - the matrix 854 855 Output Parameter: 856 . prefix - pointer to the prefix string used 857 858 Level: advanced 859 860 Fortran Note: 861 The user should pass in a string `prefix` of 862 sufficient length to hold the prefix. 863 864 .seealso: [](ch_matrices), `Mat`, `MatAppendOptionsPrefix()`, `MatSetOptionsPrefix()`, `MatAppendOptionsPrefixFactor()`, `MatSetOptionsPrefixFactor()` 865 @*/ 866 PetscErrorCode MatGetOptionsPrefix(Mat A, const char *prefix[]) 867 { 868 PetscFunctionBegin; 869 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 870 PetscAssertPointer(prefix, 2); 871 PetscCall(PetscObjectGetOptionsPrefix((PetscObject)A, prefix)); 872 PetscFunctionReturn(PETSC_SUCCESS); 873 } 874 875 /*@ 876 MatResetPreallocation - Reset matrix to use the original nonzero pattern provided by the user. 877 878 Collective 879 880 Input Parameter: 881 . A - the matrix 882 883 Level: beginner 884 885 Notes: 886 The allocated memory will be shrunk after calling `MatAssemblyBegin()` and `MatAssemblyEnd()` with `MAT_FINAL_ASSEMBLY`. 887 888 Users can reset the preallocation to access the original memory. 889 890 Currently only supported for `MATAIJ` matrices. 891 892 .seealso: [](ch_matrices), `Mat`, `MatSeqAIJSetPreallocation()`, `MatMPIAIJSetPreallocation()`, `MatXAIJSetPreallocation()` 893 @*/ 894 PetscErrorCode MatResetPreallocation(Mat A) 895 { 896 PetscFunctionBegin; 897 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 898 PetscValidType(A, 1); 899 PetscCheck(A->insertmode == NOT_SET_VALUES, PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot reset preallocation after setting some values but not yet calling MatAssemblyBegin()/MatAsssemblyEnd()"); 900 if (A->num_ass == 0) PetscFunctionReturn(PETSC_SUCCESS); 901 PetscUseMethod(A, "MatResetPreallocation_C", (Mat), (A)); 902 PetscFunctionReturn(PETSC_SUCCESS); 903 } 904 905 /*@ 906 MatSetUp - Sets up the internal matrix data structures for later use. 907 908 Collective 909 910 Input Parameter: 911 . A - the matrix 912 913 Level: intermediate 914 915 Notes: 916 If the user has not set preallocation for this matrix then an efficient algorithm will be used for the first round of 917 setting values in the matrix. 918 919 This routine is called internally by other matrix functions when needed so rarely needs to be called by users 920 921 .seealso: [](ch_matrices), `Mat`, `MatMult()`, `MatCreate()`, `MatDestroy()`, `MatXAIJSetPreallocation()` 922 @*/ 923 PetscErrorCode MatSetUp(Mat A) 924 { 925 PetscFunctionBegin; 926 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 927 if (!((PetscObject)A)->type_name) { 928 PetscMPIInt size; 929 930 PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 931 PetscCall(MatSetType(A, size == 1 ? MATSEQAIJ : MATMPIAIJ)); 932 } 933 if (!A->preallocated) PetscTryTypeMethod(A, setup); 934 PetscCall(PetscLayoutSetUp(A->rmap)); 935 PetscCall(PetscLayoutSetUp(A->cmap)); 936 A->preallocated = PETSC_TRUE; 937 PetscFunctionReturn(PETSC_SUCCESS); 938 } 939 940 #if defined(PETSC_HAVE_SAWS) 941 #include <petscviewersaws.h> 942 #endif 943 944 /* 945 If threadsafety is on extraneous matrices may be printed 946 947 This flag cannot be stored in the matrix because the original matrix in MatView() may assemble a new matrix which is passed into MatViewFromOptions() 948 */ 949 #if !defined(PETSC_HAVE_THREADSAFETY) 950 static PetscInt insidematview = 0; 951 #endif 952 953 /*@C 954 MatViewFromOptions - View properties of the matrix based on options set in the options database 955 956 Collective 957 958 Input Parameters: 959 + A - the matrix 960 . obj - optional additional object that provides the options prefix to use 961 - name - command line option 962 963 Options Database Key: 964 . -mat_view [viewertype]:... - the viewer and its options 965 966 Level: intermediate 967 968 Note: 969 .vb 970 If no value is provided ascii:stdout is used 971 ascii[:[filename][:[format][:append]]] defaults to stdout - format can be one of ascii_info, ascii_info_detail, or ascii_matlab, 972 for example ascii::ascii_info prints just the information about the object not all details 973 unless :append is given filename opens in write mode, overwriting what was already there 974 binary[:[filename][:[format][:append]]] defaults to the file binaryoutput 975 draw[:drawtype[:filename]] for example, draw:tikz, draw:tikz:figure.tex or draw:x 976 socket[:port] defaults to the standard output port 977 saws[:communicatorname] publishes object to the Scientific Application Webserver (SAWs) 978 .ve 979 980 .seealso: [](ch_matrices), `Mat`, `MatView()`, `PetscObjectViewFromOptions()`, `MatCreate()` 981 @*/ 982 PetscErrorCode MatViewFromOptions(Mat A, PetscObject obj, const char name[]) 983 { 984 PetscFunctionBegin; 985 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 986 #if !defined(PETSC_HAVE_THREADSAFETY) 987 if (insidematview) PetscFunctionReturn(PETSC_SUCCESS); 988 #endif 989 PetscCall(PetscObjectViewFromOptions((PetscObject)A, obj, name)); 990 PetscFunctionReturn(PETSC_SUCCESS); 991 } 992 993 /*@C 994 MatView - display information about a matrix in a variety ways 995 996 Collective 997 998 Input Parameters: 999 + mat - the matrix 1000 - viewer - visualization context 1001 1002 Options Database Keys: 1003 + -mat_view ::ascii_info - Prints info on matrix at conclusion of `MatAssemblyEnd()` 1004 . -mat_view ::ascii_info_detail - Prints more detailed info 1005 . -mat_view - Prints matrix in ASCII format 1006 . -mat_view ::ascii_matlab - Prints matrix in MATLAB format 1007 . -mat_view draw - PetscDraws nonzero structure of matrix, using `MatView()` and `PetscDrawOpenX()`. 1008 . -display <name> - Sets display name (default is host) 1009 . -draw_pause <sec> - Sets number of seconds to pause after display 1010 . -mat_view socket - Sends matrix to socket, can be accessed from MATLAB (see Users-Manual: ch_matlab for details) 1011 . -viewer_socket_machine <machine> - - 1012 . -viewer_socket_port <port> - - 1013 . -mat_view binary - save matrix to file in binary format 1014 - -viewer_binary_filename <name> - - 1015 1016 Level: beginner 1017 1018 Notes: 1019 The available visualization contexts include 1020 + `PETSC_VIEWER_STDOUT_SELF` - for sequential matrices 1021 . `PETSC_VIEWER_STDOUT_WORLD` - for parallel matrices created on `PETSC_COMM_WORLD` 1022 . `PETSC_VIEWER_STDOUT_`(comm) - for matrices created on MPI communicator comm 1023 - `PETSC_VIEWER_DRAW_WORLD` - graphical display of nonzero structure 1024 1025 The user can open alternative visualization contexts with 1026 + `PetscViewerASCIIOpen()` - Outputs matrix to a specified file 1027 . `PetscViewerBinaryOpen()` - Outputs matrix in binary to a 1028 specified file; corresponding input uses `MatLoad()` 1029 . `PetscViewerDrawOpen()` - Outputs nonzero matrix structure to 1030 an X window display 1031 - `PetscViewerSocketOpen()` - Outputs matrix to Socket viewer. 1032 Currently only the `MATSEQDENSE` and `MATAIJ` 1033 matrix types support the Socket viewer. 1034 1035 The user can call `PetscViewerPushFormat()` to specify the output 1036 format of ASCII printed objects (when using `PETSC_VIEWER_STDOUT_SELF`, 1037 `PETSC_VIEWER_STDOUT_WORLD` and `PetscViewerASCIIOpen()`). Available formats include 1038 + `PETSC_VIEWER_DEFAULT` - default, prints matrix contents 1039 . `PETSC_VIEWER_ASCII_MATLAB` - prints matrix contents in MATLAB format 1040 . `PETSC_VIEWER_ASCII_DENSE` - prints entire matrix including zeros 1041 . `PETSC_VIEWER_ASCII_COMMON` - prints matrix contents, using a sparse 1042 format common among all matrix types 1043 . `PETSC_VIEWER_ASCII_IMPL` - prints matrix contents, using an implementation-specific 1044 format (which is in many cases the same as the default) 1045 . `PETSC_VIEWER_ASCII_INFO` - prints basic information about the matrix 1046 size and structure (not the matrix entries) 1047 - `PETSC_VIEWER_ASCII_INFO_DETAIL` - prints more detailed information about 1048 the matrix structure 1049 1050 The ASCII viewers are only recommended for small matrices on at most a moderate number of processes, 1051 the program will seemingly hang and take hours for larger matrices, for larger matrices one should use the binary format. 1052 1053 In the debugger you can do "call MatView(mat,0)" to display the matrix. (The same holds for any PETSc object viewer). 1054 1055 See the manual page for `MatLoad()` for the exact format of the binary file when the binary 1056 viewer is used. 1057 1058 See share/petsc/matlab/PetscBinaryRead.m for a MATLAB code that can read in the binary file when the binary 1059 viewer is used and lib/petsc/bin/PetscBinaryIO.py for loading them into Python. 1060 1061 One can use '-mat_view draw -draw_pause -1' to pause the graphical display of matrix nonzero structure, 1062 and then use the following mouse functions. 1063 .vb 1064 left mouse: zoom in 1065 middle mouse: zoom out 1066 right mouse: continue with the simulation 1067 .ve 1068 1069 .seealso: [](ch_matrices), `Mat`, `PetscViewerPushFormat()`, `PetscViewerASCIIOpen()`, `PetscViewerDrawOpen()`, `PetscViewer`, 1070 `PetscViewerSocketOpen()`, `PetscViewerBinaryOpen()`, `MatLoad()`, `MatViewFromOptions()` 1071 @*/ 1072 PetscErrorCode MatView(Mat mat, PetscViewer viewer) 1073 { 1074 PetscInt rows, cols, rbs, cbs; 1075 PetscBool isascii, isstring, issaws; 1076 PetscViewerFormat format; 1077 PetscMPIInt size; 1078 1079 PetscFunctionBegin; 1080 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 1081 PetscValidType(mat, 1); 1082 if (!viewer) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)mat), &viewer)); 1083 PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 1084 PetscCheckSameComm(mat, 1, viewer, 2); 1085 1086 PetscCall(PetscViewerGetFormat(viewer, &format)); 1087 PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)mat), &size)); 1088 if (size == 1 && format == PETSC_VIEWER_LOAD_BALANCE) PetscFunctionReturn(PETSC_SUCCESS); 1089 1090 #if !defined(PETSC_HAVE_THREADSAFETY) 1091 insidematview++; 1092 #endif 1093 PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSTRING, &isstring)); 1094 PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii)); 1095 PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSAWS, &issaws)); 1096 PetscCheck((isascii && (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL)) || !mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "No viewers for factored matrix except ASCII, info, or info_detail"); 1097 1098 PetscCall(PetscLogEventBegin(MAT_View, mat, viewer, 0, 0)); 1099 if (isascii) { 1100 if (!mat->preallocated) { 1101 PetscCall(PetscViewerASCIIPrintf(viewer, "Matrix has not been preallocated yet\n")); 1102 #if !defined(PETSC_HAVE_THREADSAFETY) 1103 insidematview--; 1104 #endif 1105 PetscCall(PetscLogEventEnd(MAT_View, mat, viewer, 0, 0)); 1106 PetscFunctionReturn(PETSC_SUCCESS); 1107 } 1108 if (!mat->assembled) { 1109 PetscCall(PetscViewerASCIIPrintf(viewer, "Matrix has not been assembled yet\n")); 1110 #if !defined(PETSC_HAVE_THREADSAFETY) 1111 insidematview--; 1112 #endif 1113 PetscCall(PetscLogEventEnd(MAT_View, mat, viewer, 0, 0)); 1114 PetscFunctionReturn(PETSC_SUCCESS); 1115 } 1116 PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)mat, viewer)); 1117 if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 1118 MatNullSpace nullsp, transnullsp; 1119 1120 PetscCall(PetscViewerASCIIPushTab(viewer)); 1121 PetscCall(MatGetSize(mat, &rows, &cols)); 1122 PetscCall(MatGetBlockSizes(mat, &rbs, &cbs)); 1123 if (rbs != 1 || cbs != 1) { 1124 if (rbs != cbs) PetscCall(PetscViewerASCIIPrintf(viewer, "rows=%" PetscInt_FMT ", cols=%" PetscInt_FMT ", rbs=%" PetscInt_FMT ", cbs=%" PetscInt_FMT "\n", rows, cols, rbs, cbs)); 1125 else PetscCall(PetscViewerASCIIPrintf(viewer, "rows=%" PetscInt_FMT ", cols=%" PetscInt_FMT ", bs=%" PetscInt_FMT "\n", rows, cols, rbs)); 1126 } else PetscCall(PetscViewerASCIIPrintf(viewer, "rows=%" PetscInt_FMT ", cols=%" PetscInt_FMT "\n", rows, cols)); 1127 if (mat->factortype) { 1128 MatSolverType solver; 1129 PetscCall(MatFactorGetSolverType(mat, &solver)); 1130 PetscCall(PetscViewerASCIIPrintf(viewer, "package used to perform factorization: %s\n", solver)); 1131 } 1132 if (mat->ops->getinfo) { 1133 MatInfo info; 1134 PetscCall(MatGetInfo(mat, MAT_GLOBAL_SUM, &info)); 1135 PetscCall(PetscViewerASCIIPrintf(viewer, "total: nonzeros=%.f, allocated nonzeros=%.f\n", info.nz_used, info.nz_allocated)); 1136 if (!mat->factortype) PetscCall(PetscViewerASCIIPrintf(viewer, "total number of mallocs used during MatSetValues calls=%" PetscInt_FMT "\n", (PetscInt)info.mallocs)); 1137 } 1138 PetscCall(MatGetNullSpace(mat, &nullsp)); 1139 PetscCall(MatGetTransposeNullSpace(mat, &transnullsp)); 1140 if (nullsp) PetscCall(PetscViewerASCIIPrintf(viewer, " has attached null space\n")); 1141 if (transnullsp && transnullsp != nullsp) PetscCall(PetscViewerASCIIPrintf(viewer, " has attached transposed null space\n")); 1142 PetscCall(MatGetNearNullSpace(mat, &nullsp)); 1143 if (nullsp) PetscCall(PetscViewerASCIIPrintf(viewer, " has attached near null space\n")); 1144 PetscCall(PetscViewerASCIIPushTab(viewer)); 1145 PetscCall(MatProductView(mat, viewer)); 1146 PetscCall(PetscViewerASCIIPopTab(viewer)); 1147 } 1148 } else if (issaws) { 1149 #if defined(PETSC_HAVE_SAWS) 1150 PetscMPIInt rank; 1151 1152 PetscCall(PetscObjectName((PetscObject)mat)); 1153 PetscCallMPI(MPI_Comm_rank(PETSC_COMM_WORLD, &rank)); 1154 if (!((PetscObject)mat)->amsmem && rank == 0) PetscCall(PetscObjectViewSAWs((PetscObject)mat, viewer)); 1155 #endif 1156 } else if (isstring) { 1157 const char *type; 1158 PetscCall(MatGetType(mat, &type)); 1159 PetscCall(PetscViewerStringSPrintf(viewer, " MatType: %-7.7s", type)); 1160 PetscTryTypeMethod(mat, view, viewer); 1161 } 1162 if ((format == PETSC_VIEWER_NATIVE || format == PETSC_VIEWER_LOAD_BALANCE) && mat->ops->viewnative) { 1163 PetscCall(PetscViewerASCIIPushTab(viewer)); 1164 PetscUseTypeMethod(mat, viewnative, viewer); 1165 PetscCall(PetscViewerASCIIPopTab(viewer)); 1166 } else if (mat->ops->view) { 1167 PetscCall(PetscViewerASCIIPushTab(viewer)); 1168 PetscUseTypeMethod(mat, view, viewer); 1169 PetscCall(PetscViewerASCIIPopTab(viewer)); 1170 } 1171 if (isascii) { 1172 PetscCall(PetscViewerGetFormat(viewer, &format)); 1173 if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) PetscCall(PetscViewerASCIIPopTab(viewer)); 1174 } 1175 PetscCall(PetscLogEventEnd(MAT_View, mat, viewer, 0, 0)); 1176 #if !defined(PETSC_HAVE_THREADSAFETY) 1177 insidematview--; 1178 #endif 1179 PetscFunctionReturn(PETSC_SUCCESS); 1180 } 1181 1182 #if defined(PETSC_USE_DEBUG) 1183 #include <../src/sys/totalview/tv_data_display.h> 1184 PETSC_UNUSED static int TV_display_type(const struct _p_Mat *mat) 1185 { 1186 TV_add_row("Local rows", "int", &mat->rmap->n); 1187 TV_add_row("Local columns", "int", &mat->cmap->n); 1188 TV_add_row("Global rows", "int", &mat->rmap->N); 1189 TV_add_row("Global columns", "int", &mat->cmap->N); 1190 TV_add_row("Typename", TV_ascii_string_type, ((PetscObject)mat)->type_name); 1191 return TV_format_OK; 1192 } 1193 #endif 1194 1195 /*@C 1196 MatLoad - Loads a matrix that has been stored in binary/HDF5 format 1197 with `MatView()`. The matrix format is determined from the options database. 1198 Generates a parallel MPI matrix if the communicator has more than one 1199 processor. The default matrix type is `MATAIJ`. 1200 1201 Collective 1202 1203 Input Parameters: 1204 + mat - the newly loaded matrix, this needs to have been created with `MatCreate()` 1205 or some related function before a call to `MatLoad()` 1206 - viewer - `PETSCVIEWERBINARY`/`PETSCVIEWERHDF5` file viewer 1207 1208 Options Database Key: 1209 . -matload_block_size <bs> - set block size 1210 1211 Level: beginner 1212 1213 Notes: 1214 If the `Mat` type has not yet been given then `MATAIJ` is used, call `MatSetFromOptions()` on the 1215 `Mat` before calling this routine if you wish to set it from the options database. 1216 1217 `MatLoad()` automatically loads into the options database any options 1218 given in the file filename.info where filename is the name of the file 1219 that was passed to the `PetscViewerBinaryOpen()`. The options in the info 1220 file will be ignored if you use the -viewer_binary_skip_info option. 1221 1222 If the type or size of mat is not set before a call to `MatLoad()`, PETSc 1223 sets the default matrix type AIJ and sets the local and global sizes. 1224 If type and/or size is already set, then the same are used. 1225 1226 In parallel, each processor can load a subset of rows (or the 1227 entire matrix). This routine is especially useful when a large 1228 matrix is stored on disk and only part of it is desired on each 1229 processor. For example, a parallel solver may access only some of 1230 the rows from each processor. The algorithm used here reads 1231 relatively small blocks of data rather than reading the entire 1232 matrix and then subsetting it. 1233 1234 Viewer's `PetscViewerType` must be either `PETSCVIEWERBINARY` or `PETSCVIEWERHDF5`. 1235 Such viewer can be created using `PetscViewerBinaryOpen()` or `PetscViewerHDF5Open()`, 1236 or the sequence like 1237 .vb 1238 `PetscViewer` v; 1239 `PetscViewerCreate`(`PETSC_COMM_WORLD`,&v); 1240 `PetscViewerSetType`(v,`PETSCVIEWERBINARY`); 1241 `PetscViewerSetFromOptions`(v); 1242 `PetscViewerFileSetMode`(v,`FILE_MODE_READ`); 1243 `PetscViewerFileSetName`(v,"datafile"); 1244 .ve 1245 The optional `PetscViewerSetFromOptions()` call allows overriding `PetscViewerSetType()` using the option 1246 $ -viewer_type {binary, hdf5} 1247 1248 See the example src/ksp/ksp/tutorials/ex27.c with the first approach, 1249 and src/mat/tutorials/ex10.c with the second approach. 1250 1251 In case of `PETSCVIEWERBINARY`, a native PETSc binary format is used. Each of the blocks 1252 is read onto MPI rank 0 and then shipped to its destination MPI rank, one after another. 1253 Multiple objects, both matrices and vectors, can be stored within the same file. 1254 Their `PetscObject` name is ignored; they are loaded in the order of their storage. 1255 1256 Most users should not need to know the details of the binary storage 1257 format, since `MatLoad()` and `MatView()` completely hide these details. 1258 But for anyone who is interested, the standard binary matrix storage 1259 format is 1260 1261 .vb 1262 PetscInt MAT_FILE_CLASSID 1263 PetscInt number of rows 1264 PetscInt number of columns 1265 PetscInt total number of nonzeros 1266 PetscInt *number nonzeros in each row 1267 PetscInt *column indices of all nonzeros (starting index is zero) 1268 PetscScalar *values of all nonzeros 1269 .ve 1270 If PETSc was not configured with `--with-64-bit-indices` then only `MATMPIAIJ` matrices with more than `PETSC_INT_MAX` non-zeros can be 1271 stored or loaded (each MPI process part of the matrix must have less than `PETSC_INT_MAX` nonzeros). Since the total nonzero count in this 1272 case will not fit in a (32-bit) `PetscInt` the value `PETSC_INT_MAX` is used for the header entry `total number of nonzeros`. 1273 1274 PETSc automatically does the byte swapping for 1275 machines that store the bytes reversed. Thus if you write your own binary 1276 read/write routines you have to swap the bytes; see `PetscBinaryRead()` 1277 and `PetscBinaryWrite()` to see how this may be done. 1278 1279 In case of `PETSCVIEWERHDF5`, a parallel HDF5 reader is used. 1280 Each processor's chunk is loaded independently by its owning MPI process. 1281 Multiple objects, both matrices and vectors, can be stored within the same file. 1282 They are looked up by their PetscObject name. 1283 1284 As the MATLAB MAT-File Version 7.3 format is also a HDF5 flavor, we decided to use 1285 by default the same structure and naming of the AIJ arrays and column count 1286 within the HDF5 file. This means that a MAT file saved with -v7.3 flag, e.g. 1287 $ save example.mat A b -v7.3 1288 can be directly read by this routine (see Reference 1 for details). 1289 1290 Depending on your MATLAB version, this format might be a default, 1291 otherwise you can set it as default in Preferences. 1292 1293 Unless -nocompression flag is used to save the file in MATLAB, 1294 PETSc must be configured with ZLIB package. 1295 1296 See also examples src/mat/tutorials/ex10.c and src/ksp/ksp/tutorials/ex27.c 1297 1298 This reader currently supports only real `MATSEQAIJ`, `MATMPIAIJ`, `MATSEQDENSE` and `MATMPIDENSE` matrices for `PETSCVIEWERHDF5` 1299 1300 Corresponding `MatView()` is not yet implemented. 1301 1302 The loaded matrix is actually a transpose of the original one in MATLAB, 1303 unless you push `PETSC_VIEWER_HDF5_MAT` format (see examples above). 1304 With this format, matrix is automatically transposed by PETSc, 1305 unless the matrix is marked as SPD or symmetric 1306 (see `MatSetOption()`, `MAT_SPD`, `MAT_SYMMETRIC`). 1307 1308 See MATLAB Documentation on `save()`, <https://www.mathworks.com/help/matlab/ref/save.html#btox10b-1-version> 1309 1310 .seealso: [](ch_matrices), `Mat`, `PetscViewerBinaryOpen()`, `PetscViewerSetType()`, `MatView()`, `VecLoad()` 1311 @*/ 1312 PetscErrorCode MatLoad(Mat mat, PetscViewer viewer) 1313 { 1314 PetscBool flg; 1315 1316 PetscFunctionBegin; 1317 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 1318 PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 1319 1320 if (!((PetscObject)mat)->type_name) PetscCall(MatSetType(mat, MATAIJ)); 1321 1322 flg = PETSC_FALSE; 1323 PetscCall(PetscOptionsGetBool(((PetscObject)mat)->options, ((PetscObject)mat)->prefix, "-matload_symmetric", &flg, NULL)); 1324 if (flg) { 1325 PetscCall(MatSetOption(mat, MAT_SYMMETRIC, PETSC_TRUE)); 1326 PetscCall(MatSetOption(mat, MAT_SYMMETRY_ETERNAL, PETSC_TRUE)); 1327 } 1328 flg = PETSC_FALSE; 1329 PetscCall(PetscOptionsGetBool(((PetscObject)mat)->options, ((PetscObject)mat)->prefix, "-matload_spd", &flg, NULL)); 1330 if (flg) PetscCall(MatSetOption(mat, MAT_SPD, PETSC_TRUE)); 1331 1332 PetscCall(PetscLogEventBegin(MAT_Load, mat, viewer, 0, 0)); 1333 PetscUseTypeMethod(mat, load, viewer); 1334 PetscCall(PetscLogEventEnd(MAT_Load, mat, viewer, 0, 0)); 1335 PetscFunctionReturn(PETSC_SUCCESS); 1336 } 1337 1338 static PetscErrorCode MatDestroy_Redundant(Mat_Redundant **redundant) 1339 { 1340 Mat_Redundant *redund = *redundant; 1341 1342 PetscFunctionBegin; 1343 if (redund) { 1344 if (redund->matseq) { /* via MatCreateSubMatrices() */ 1345 PetscCall(ISDestroy(&redund->isrow)); 1346 PetscCall(ISDestroy(&redund->iscol)); 1347 PetscCall(MatDestroySubMatrices(1, &redund->matseq)); 1348 } else { 1349 PetscCall(PetscFree2(redund->send_rank, redund->recv_rank)); 1350 PetscCall(PetscFree(redund->sbuf_j)); 1351 PetscCall(PetscFree(redund->sbuf_a)); 1352 for (PetscInt i = 0; i < redund->nrecvs; i++) { 1353 PetscCall(PetscFree(redund->rbuf_j[i])); 1354 PetscCall(PetscFree(redund->rbuf_a[i])); 1355 } 1356 PetscCall(PetscFree4(redund->sbuf_nz, redund->rbuf_nz, redund->rbuf_j, redund->rbuf_a)); 1357 } 1358 1359 if (redund->subcomm) PetscCall(PetscCommDestroy(&redund->subcomm)); 1360 PetscCall(PetscFree(redund)); 1361 } 1362 PetscFunctionReturn(PETSC_SUCCESS); 1363 } 1364 1365 /*@C 1366 MatDestroy - Frees space taken by a matrix. 1367 1368 Collective 1369 1370 Input Parameter: 1371 . A - the matrix 1372 1373 Level: beginner 1374 1375 Developer Note: 1376 Some special arrays of matrices are not destroyed in this routine but instead by the routines called by 1377 `MatDestroySubMatrices()`. Thus one must be sure that any changes here must also be made in those routines. 1378 `MatHeaderMerge()` and `MatHeaderReplace()` also manipulate the data in the `Mat` object and likely need changes 1379 if changes are needed here. 1380 1381 .seealso: [](ch_matrices), `Mat`, `MatCreate()` 1382 @*/ 1383 PetscErrorCode MatDestroy(Mat *A) 1384 { 1385 PetscFunctionBegin; 1386 if (!*A) PetscFunctionReturn(PETSC_SUCCESS); 1387 PetscValidHeaderSpecific(*A, MAT_CLASSID, 1); 1388 if (--((PetscObject)(*A))->refct > 0) { 1389 *A = NULL; 1390 PetscFunctionReturn(PETSC_SUCCESS); 1391 } 1392 1393 /* if memory was published with SAWs then destroy it */ 1394 PetscCall(PetscObjectSAWsViewOff((PetscObject)*A)); 1395 PetscTryTypeMethod((*A), destroy); 1396 1397 PetscCall(PetscFree((*A)->factorprefix)); 1398 PetscCall(PetscFree((*A)->defaultvectype)); 1399 PetscCall(PetscFree((*A)->defaultrandtype)); 1400 PetscCall(PetscFree((*A)->bsizes)); 1401 PetscCall(PetscFree((*A)->solvertype)); 1402 for (PetscInt i = 0; i < MAT_FACTOR_NUM_TYPES; i++) PetscCall(PetscFree((*A)->preferredordering[i])); 1403 if ((*A)->redundant && (*A)->redundant->matseq[0] == *A) (*A)->redundant->matseq[0] = NULL; 1404 PetscCall(MatDestroy_Redundant(&(*A)->redundant)); 1405 PetscCall(MatProductClear(*A)); 1406 PetscCall(MatNullSpaceDestroy(&(*A)->nullsp)); 1407 PetscCall(MatNullSpaceDestroy(&(*A)->transnullsp)); 1408 PetscCall(MatNullSpaceDestroy(&(*A)->nearnullsp)); 1409 PetscCall(MatDestroy(&(*A)->schur)); 1410 PetscCall(PetscLayoutDestroy(&(*A)->rmap)); 1411 PetscCall(PetscLayoutDestroy(&(*A)->cmap)); 1412 PetscCall(PetscHeaderDestroy(A)); 1413 PetscFunctionReturn(PETSC_SUCCESS); 1414 } 1415 1416 // PetscClangLinter pragma disable: -fdoc-section-header-unknown 1417 /*@C 1418 MatSetValues - Inserts or adds a block of values into a matrix. 1419 These values may be cached, so `MatAssemblyBegin()` and `MatAssemblyEnd()` 1420 MUST be called after all calls to `MatSetValues()` have been completed. 1421 1422 Not Collective 1423 1424 Input Parameters: 1425 + mat - the matrix 1426 . v - a logically two-dimensional array of values 1427 . m - the number of rows 1428 . idxm - the global indices of the rows 1429 . n - the number of columns 1430 . idxn - the global indices of the columns 1431 - addv - either `ADD_VALUES` to add values to any existing entries, or `INSERT_VALUES` to replace existing entries with new values 1432 1433 Level: beginner 1434 1435 Notes: 1436 By default the values, `v`, are stored row-oriented. See `MatSetOption()` for other options. 1437 1438 Calls to `MatSetValues()` with the `INSERT_VALUES` and `ADD_VALUES` 1439 options cannot be mixed without intervening calls to the assembly 1440 routines. 1441 1442 `MatSetValues()` uses 0-based row and column numbers in Fortran 1443 as well as in C. 1444 1445 Negative indices may be passed in `idxm` and `idxn`, these rows and columns are 1446 simply ignored. This allows easily inserting element stiffness matrices 1447 with homogeneous Dirichlet boundary conditions that you don't want represented 1448 in the matrix. 1449 1450 Efficiency Alert: 1451 The routine `MatSetValuesBlocked()` may offer much better efficiency 1452 for users of block sparse formats (`MATSEQBAIJ` and `MATMPIBAIJ`). 1453 1454 Developer Note: 1455 This is labeled with C so does not automatically generate Fortran stubs and interfaces 1456 because it requires multiple Fortran interfaces depending on which arguments are scalar or arrays. 1457 1458 .seealso: [](ch_matrices), `Mat`, `MatSetOption()`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValuesBlocked()`, `MatSetValuesLocal()`, 1459 `InsertMode`, `INSERT_VALUES`, `ADD_VALUES` 1460 @*/ 1461 PetscErrorCode MatSetValues(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], const PetscScalar v[], InsertMode addv) 1462 { 1463 PetscFunctionBeginHot; 1464 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 1465 PetscValidType(mat, 1); 1466 if (!m || !n) PetscFunctionReturn(PETSC_SUCCESS); /* no values to insert */ 1467 PetscAssertPointer(idxm, 3); 1468 PetscAssertPointer(idxn, 5); 1469 MatCheckPreallocated(mat, 1); 1470 1471 if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 1472 else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 1473 1474 if (PetscDefined(USE_DEBUG)) { 1475 PetscInt i, j; 1476 1477 PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 1478 for (i = 0; i < m; i++) { 1479 for (j = 0; j < n; j++) { 1480 if (mat->erroriffailure && PetscIsInfOrNanScalar(v[i * n + j])) 1481 #if defined(PETSC_USE_COMPLEX) 1482 SETERRQ(PETSC_COMM_SELF, PETSC_ERR_FP, "Inserting %g+i%g at matrix entry (%" PetscInt_FMT ",%" PetscInt_FMT ")", (double)PetscRealPart(v[i * n + j]), (double)PetscImaginaryPart(v[i * n + j]), idxm[i], idxn[j]); 1483 #else 1484 SETERRQ(PETSC_COMM_SELF, PETSC_ERR_FP, "Inserting %g at matrix entry (%" PetscInt_FMT ",%" PetscInt_FMT ")", (double)v[i * n + j], idxm[i], idxn[j]); 1485 #endif 1486 } 1487 } 1488 for (i = 0; i < m; i++) PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot insert in row %" PetscInt_FMT ", maximum is %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 1489 for (i = 0; i < n; i++) PetscCheck(idxn[i] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot insert in column %" PetscInt_FMT ", maximum is %" PetscInt_FMT, idxn[i], mat->cmap->N - 1); 1490 } 1491 1492 if (mat->assembled) { 1493 mat->was_assembled = PETSC_TRUE; 1494 mat->assembled = PETSC_FALSE; 1495 } 1496 PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0)); 1497 PetscUseTypeMethod(mat, setvalues, m, idxm, n, idxn, v, addv); 1498 PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0)); 1499 PetscFunctionReturn(PETSC_SUCCESS); 1500 } 1501 1502 // PetscClangLinter pragma disable: -fdoc-section-header-unknown 1503 /*@C 1504 MatSetValuesIS - Inserts or adds a block of values into a matrix using an `IS` to indicate the rows and columns 1505 These values may be cached, so `MatAssemblyBegin()` and `MatAssemblyEnd()` 1506 MUST be called after all calls to `MatSetValues()` have been completed. 1507 1508 Not Collective 1509 1510 Input Parameters: 1511 + mat - the matrix 1512 . v - a logically two-dimensional array of values 1513 . ism - the rows to provide 1514 . isn - the columns to provide 1515 - addv - either `ADD_VALUES` to add values to any existing entries, or `INSERT_VALUES` to replace existing entries with new values 1516 1517 Level: beginner 1518 1519 Notes: 1520 By default the values, `v`, are stored row-oriented. See `MatSetOption()` for other options. 1521 1522 Calls to `MatSetValues()` with the `INSERT_VALUES` and `ADD_VALUES` 1523 options cannot be mixed without intervening calls to the assembly 1524 routines. 1525 1526 `MatSetValues()` uses 0-based row and column numbers in Fortran 1527 as well as in C. 1528 1529 Negative indices may be passed in `ism` and `isn`, these rows and columns are 1530 simply ignored. This allows easily inserting element stiffness matrices 1531 with homogeneous Dirichlet boundary conditions that you don't want represented 1532 in the matrix. 1533 1534 Efficiency Alert: 1535 The routine `MatSetValuesBlocked()` may offer much better efficiency 1536 for users of block sparse formats (`MATSEQBAIJ` and `MATMPIBAIJ`). 1537 1538 This is currently not optimized for any particular `ISType` 1539 1540 Developer Note: 1541 This is labeled with C so does not automatically generate Fortran stubs and interfaces 1542 because it requires multiple Fortran interfaces depending on which arguments are scalar or arrays. 1543 1544 .seealso: [](ch_matrices), `Mat`, `MatSetOption()`, `MatSetValues()`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValuesBlocked()`, `MatSetValuesLocal()`, 1545 `InsertMode`, `INSERT_VALUES`, `ADD_VALUES` 1546 @*/ 1547 PetscErrorCode MatSetValuesIS(Mat mat, IS ism, IS isn, const PetscScalar v[], InsertMode addv) 1548 { 1549 PetscInt m, n; 1550 const PetscInt *rows, *cols; 1551 1552 PetscFunctionBeginHot; 1553 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 1554 PetscCall(ISGetIndices(ism, &rows)); 1555 PetscCall(ISGetIndices(isn, &cols)); 1556 PetscCall(ISGetLocalSize(ism, &m)); 1557 PetscCall(ISGetLocalSize(isn, &n)); 1558 PetscCall(MatSetValues(mat, m, rows, n, cols, v, addv)); 1559 PetscCall(ISRestoreIndices(ism, &rows)); 1560 PetscCall(ISRestoreIndices(isn, &cols)); 1561 PetscFunctionReturn(PETSC_SUCCESS); 1562 } 1563 1564 /*@ 1565 MatSetValuesRowLocal - Inserts a row (block row for `MATBAIJ` matrices) of nonzero 1566 values into a matrix 1567 1568 Not Collective 1569 1570 Input Parameters: 1571 + mat - the matrix 1572 . row - the (block) row to set 1573 - v - a logically two-dimensional array of values 1574 1575 Level: intermediate 1576 1577 Notes: 1578 The values, `v`, are column-oriented (for the block version) and sorted 1579 1580 All the nonzero values in `row` must be provided 1581 1582 The matrix must have previously had its column indices set, likely by having been assembled. 1583 1584 `row` must belong to this MPI process 1585 1586 .seealso: [](ch_matrices), `Mat`, `MatSetOption()`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValuesBlocked()`, `MatSetValuesLocal()`, 1587 `InsertMode`, `INSERT_VALUES`, `ADD_VALUES`, `MatSetValues()`, `MatSetValuesRow()`, `MatSetLocalToGlobalMapping()` 1588 @*/ 1589 PetscErrorCode MatSetValuesRowLocal(Mat mat, PetscInt row, const PetscScalar v[]) 1590 { 1591 PetscInt globalrow; 1592 1593 PetscFunctionBegin; 1594 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 1595 PetscValidType(mat, 1); 1596 PetscAssertPointer(v, 3); 1597 PetscCall(ISLocalToGlobalMappingApply(mat->rmap->mapping, 1, &row, &globalrow)); 1598 PetscCall(MatSetValuesRow(mat, globalrow, v)); 1599 PetscFunctionReturn(PETSC_SUCCESS); 1600 } 1601 1602 /*@ 1603 MatSetValuesRow - Inserts a row (block row for `MATBAIJ` matrices) of nonzero 1604 values into a matrix 1605 1606 Not Collective 1607 1608 Input Parameters: 1609 + mat - the matrix 1610 . row - the (block) row to set 1611 - v - a logically two-dimensional (column major) array of values for block matrices with blocksize larger than one, otherwise a one dimensional array of values 1612 1613 Level: advanced 1614 1615 Notes: 1616 The values, `v`, are column-oriented for the block version. 1617 1618 All the nonzeros in `row` must be provided 1619 1620 THE MATRIX MUST HAVE PREVIOUSLY HAD ITS COLUMN INDICES SET. IT IS RARE THAT THIS ROUTINE IS USED, usually `MatSetValues()` is used. 1621 1622 `row` must belong to this process 1623 1624 .seealso: [](ch_matrices), `Mat`, `MatSetValues()`, `MatSetOption()`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValuesBlocked()`, `MatSetValuesLocal()`, 1625 `InsertMode`, `INSERT_VALUES`, `ADD_VALUES` 1626 @*/ 1627 PetscErrorCode MatSetValuesRow(Mat mat, PetscInt row, const PetscScalar v[]) 1628 { 1629 PetscFunctionBeginHot; 1630 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 1631 PetscValidType(mat, 1); 1632 MatCheckPreallocated(mat, 1); 1633 PetscAssertPointer(v, 3); 1634 PetscCheck(mat->insertmode != ADD_VALUES, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add and insert values"); 1635 PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 1636 mat->insertmode = INSERT_VALUES; 1637 1638 if (mat->assembled) { 1639 mat->was_assembled = PETSC_TRUE; 1640 mat->assembled = PETSC_FALSE; 1641 } 1642 PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0)); 1643 PetscUseTypeMethod(mat, setvaluesrow, row, v); 1644 PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0)); 1645 PetscFunctionReturn(PETSC_SUCCESS); 1646 } 1647 1648 // PetscClangLinter pragma disable: -fdoc-section-header-unknown 1649 /*@ 1650 MatSetValuesStencil - Inserts or adds a block of values into a matrix. 1651 Using structured grid indexing 1652 1653 Not Collective 1654 1655 Input Parameters: 1656 + mat - the matrix 1657 . m - number of rows being entered 1658 . idxm - grid coordinates (and component number when dof > 1) for matrix rows being entered 1659 . n - number of columns being entered 1660 . idxn - grid coordinates (and component number when dof > 1) for matrix columns being entered 1661 . v - a logically two-dimensional array of values 1662 - addv - either `ADD_VALUES` to add to existing entries at that location or `INSERT_VALUES` to replace existing entries with new values 1663 1664 Level: beginner 1665 1666 Notes: 1667 By default the values, `v`, are row-oriented. See `MatSetOption()` for other options. 1668 1669 Calls to `MatSetValuesStencil()` with the `INSERT_VALUES` and `ADD_VALUES` 1670 options cannot be mixed without intervening calls to the assembly 1671 routines. 1672 1673 The grid coordinates are across the entire grid, not just the local portion 1674 1675 `MatSetValuesStencil()` uses 0-based row and column numbers in Fortran 1676 as well as in C. 1677 1678 For setting/accessing vector values via array coordinates you can use the `DMDAVecGetArray()` routine 1679 1680 In order to use this routine you must either obtain the matrix with `DMCreateMatrix()` 1681 or call `MatSetLocalToGlobalMapping()` and `MatSetStencil()` first. 1682 1683 The columns and rows in the stencil passed in MUST be contained within the 1684 ghost region of the given process as set with DMDACreateXXX() or `MatSetStencil()`. For example, 1685 if you create a `DMDA` with an overlap of one grid level and on a particular process its first 1686 local nonghost x logical coordinate is 6 (so its first ghost x logical coordinate is 5) the 1687 first i index you can use in your column and row indices in `MatSetStencil()` is 5. 1688 1689 For periodic boundary conditions use negative indices for values to the left (below 0; that are to be 1690 obtained by wrapping values from right edge). For values to the right of the last entry using that index plus one 1691 etc to obtain values that obtained by wrapping the values from the left edge. This does not work for anything but the 1692 `DM_BOUNDARY_PERIODIC` boundary type. 1693 1694 For indices that don't mean anything for your case (like the k index when working in 2d) or the c index when you have 1695 a single value per point) you can skip filling those indices. 1696 1697 Inspired by the structured grid interface to the HYPRE package 1698 (https://computation.llnl.gov/projects/hypre-scalable-linear-solvers-multigrid-methods) 1699 1700 Efficiency Alert: 1701 The routine `MatSetValuesBlockedStencil()` may offer much better efficiency 1702 for users of block sparse formats (`MATSEQBAIJ` and `MATMPIBAIJ`). 1703 1704 Fortran Note: 1705 `idxm` and `idxn` should be declared as 1706 $ MatStencil idxm(4,m),idxn(4,n) 1707 and the values inserted using 1708 .vb 1709 idxm(MatStencil_i,1) = i 1710 idxm(MatStencil_j,1) = j 1711 idxm(MatStencil_k,1) = k 1712 idxm(MatStencil_c,1) = c 1713 etc 1714 .ve 1715 1716 .seealso: [](ch_matrices), `Mat`, `DMDA`, `MatSetOption()`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValuesBlocked()`, `MatSetValuesLocal()` 1717 `MatSetValues()`, `MatSetValuesBlockedStencil()`, `MatSetStencil()`, `DMCreateMatrix()`, `DMDAVecGetArray()`, `MatStencil` 1718 @*/ 1719 PetscErrorCode MatSetValuesStencil(Mat mat, PetscInt m, const MatStencil idxm[], PetscInt n, const MatStencil idxn[], const PetscScalar v[], InsertMode addv) 1720 { 1721 PetscInt buf[8192], *bufm = NULL, *bufn = NULL, *jdxm, *jdxn; 1722 PetscInt j, i, dim = mat->stencil.dim, *dims = mat->stencil.dims + 1, tmp; 1723 PetscInt *starts = mat->stencil.starts, *dxm = (PetscInt *)idxm, *dxn = (PetscInt *)idxn, sdim = dim - (1 - (PetscInt)mat->stencil.noc); 1724 1725 PetscFunctionBegin; 1726 if (!m || !n) PetscFunctionReturn(PETSC_SUCCESS); /* no values to insert */ 1727 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 1728 PetscValidType(mat, 1); 1729 PetscAssertPointer(idxm, 3); 1730 PetscAssertPointer(idxn, 5); 1731 1732 if ((m + n) <= (PetscInt)PETSC_STATIC_ARRAY_LENGTH(buf)) { 1733 jdxm = buf; 1734 jdxn = buf + m; 1735 } else { 1736 PetscCall(PetscMalloc2(m, &bufm, n, &bufn)); 1737 jdxm = bufm; 1738 jdxn = bufn; 1739 } 1740 for (i = 0; i < m; i++) { 1741 for (j = 0; j < 3 - sdim; j++) dxm++; 1742 tmp = *dxm++ - starts[0]; 1743 for (j = 0; j < dim - 1; j++) { 1744 if ((*dxm++ - starts[j + 1]) < 0 || tmp < 0) tmp = -1; 1745 else tmp = tmp * dims[j] + *(dxm - 1) - starts[j + 1]; 1746 } 1747 if (mat->stencil.noc) dxm++; 1748 jdxm[i] = tmp; 1749 } 1750 for (i = 0; i < n; i++) { 1751 for (j = 0; j < 3 - sdim; j++) dxn++; 1752 tmp = *dxn++ - starts[0]; 1753 for (j = 0; j < dim - 1; j++) { 1754 if ((*dxn++ - starts[j + 1]) < 0 || tmp < 0) tmp = -1; 1755 else tmp = tmp * dims[j] + *(dxn - 1) - starts[j + 1]; 1756 } 1757 if (mat->stencil.noc) dxn++; 1758 jdxn[i] = tmp; 1759 } 1760 PetscCall(MatSetValuesLocal(mat, m, jdxm, n, jdxn, v, addv)); 1761 PetscCall(PetscFree2(bufm, bufn)); 1762 PetscFunctionReturn(PETSC_SUCCESS); 1763 } 1764 1765 /*@ 1766 MatSetValuesBlockedStencil - Inserts or adds a block of values into a matrix. 1767 Using structured grid indexing 1768 1769 Not Collective 1770 1771 Input Parameters: 1772 + mat - the matrix 1773 . m - number of rows being entered 1774 . idxm - grid coordinates for matrix rows being entered 1775 . n - number of columns being entered 1776 . idxn - grid coordinates for matrix columns being entered 1777 . v - a logically two-dimensional array of values 1778 - addv - either `ADD_VALUES` to add to existing entries or `INSERT_VALUES` to replace existing entries with new values 1779 1780 Level: beginner 1781 1782 Notes: 1783 By default the values, `v`, are row-oriented and unsorted. 1784 See `MatSetOption()` for other options. 1785 1786 Calls to `MatSetValuesBlockedStencil()` with the `INSERT_VALUES` and `ADD_VALUES` 1787 options cannot be mixed without intervening calls to the assembly 1788 routines. 1789 1790 The grid coordinates are across the entire grid, not just the local portion 1791 1792 `MatSetValuesBlockedStencil()` uses 0-based row and column numbers in Fortran 1793 as well as in C. 1794 1795 For setting/accessing vector values via array coordinates you can use the `DMDAVecGetArray()` routine 1796 1797 In order to use this routine you must either obtain the matrix with `DMCreateMatrix()` 1798 or call `MatSetBlockSize()`, `MatSetLocalToGlobalMapping()` and `MatSetStencil()` first. 1799 1800 The columns and rows in the stencil passed in MUST be contained within the 1801 ghost region of the given process as set with DMDACreateXXX() or `MatSetStencil()`. For example, 1802 if you create a `DMDA` with an overlap of one grid level and on a particular process its first 1803 local nonghost x logical coordinate is 6 (so its first ghost x logical coordinate is 5) the 1804 first i index you can use in your column and row indices in `MatSetStencil()` is 5. 1805 1806 Negative indices may be passed in idxm and idxn, these rows and columns are 1807 simply ignored. This allows easily inserting element stiffness matrices 1808 with homogeneous Dirichlet boundary conditions that you don't want represented 1809 in the matrix. 1810 1811 Inspired by the structured grid interface to the HYPRE package 1812 (https://computation.llnl.gov/projects/hypre-scalable-linear-solvers-multigrid-methods) 1813 1814 Fortran Note: 1815 `idxm` and `idxn` should be declared as 1816 $ MatStencil idxm(4,m),idxn(4,n) 1817 and the values inserted using 1818 .vb 1819 idxm(MatStencil_i,1) = i 1820 idxm(MatStencil_j,1) = j 1821 idxm(MatStencil_k,1) = k 1822 etc 1823 .ve 1824 1825 .seealso: [](ch_matrices), `Mat`, `DMDA`, `MatSetOption()`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValuesBlocked()`, `MatSetValuesLocal()` 1826 `MatSetValues()`, `MatSetValuesStencil()`, `MatSetStencil()`, `DMCreateMatrix()`, `DMDAVecGetArray()`, `MatStencil`, 1827 `MatSetBlockSize()`, `MatSetLocalToGlobalMapping()` 1828 @*/ 1829 PetscErrorCode MatSetValuesBlockedStencil(Mat mat, PetscInt m, const MatStencil idxm[], PetscInt n, const MatStencil idxn[], const PetscScalar v[], InsertMode addv) 1830 { 1831 PetscInt buf[8192], *bufm = NULL, *bufn = NULL, *jdxm, *jdxn; 1832 PetscInt j, i, dim = mat->stencil.dim, *dims = mat->stencil.dims + 1, tmp; 1833 PetscInt *starts = mat->stencil.starts, *dxm = (PetscInt *)idxm, *dxn = (PetscInt *)idxn, sdim = dim - (1 - (PetscInt)mat->stencil.noc); 1834 1835 PetscFunctionBegin; 1836 if (!m || !n) PetscFunctionReturn(PETSC_SUCCESS); /* no values to insert */ 1837 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 1838 PetscValidType(mat, 1); 1839 PetscAssertPointer(idxm, 3); 1840 PetscAssertPointer(idxn, 5); 1841 PetscAssertPointer(v, 6); 1842 1843 if ((m + n) <= (PetscInt)PETSC_STATIC_ARRAY_LENGTH(buf)) { 1844 jdxm = buf; 1845 jdxn = buf + m; 1846 } else { 1847 PetscCall(PetscMalloc2(m, &bufm, n, &bufn)); 1848 jdxm = bufm; 1849 jdxn = bufn; 1850 } 1851 for (i = 0; i < m; i++) { 1852 for (j = 0; j < 3 - sdim; j++) dxm++; 1853 tmp = *dxm++ - starts[0]; 1854 for (j = 0; j < sdim - 1; j++) { 1855 if ((*dxm++ - starts[j + 1]) < 0 || tmp < 0) tmp = -1; 1856 else tmp = tmp * dims[j] + *(dxm - 1) - starts[j + 1]; 1857 } 1858 dxm++; 1859 jdxm[i] = tmp; 1860 } 1861 for (i = 0; i < n; i++) { 1862 for (j = 0; j < 3 - sdim; j++) dxn++; 1863 tmp = *dxn++ - starts[0]; 1864 for (j = 0; j < sdim - 1; j++) { 1865 if ((*dxn++ - starts[j + 1]) < 0 || tmp < 0) tmp = -1; 1866 else tmp = tmp * dims[j] + *(dxn - 1) - starts[j + 1]; 1867 } 1868 dxn++; 1869 jdxn[i] = tmp; 1870 } 1871 PetscCall(MatSetValuesBlockedLocal(mat, m, jdxm, n, jdxn, v, addv)); 1872 PetscCall(PetscFree2(bufm, bufn)); 1873 PetscFunctionReturn(PETSC_SUCCESS); 1874 } 1875 1876 /*@ 1877 MatSetStencil - Sets the grid information for setting values into a matrix via 1878 `MatSetValuesStencil()` 1879 1880 Not Collective 1881 1882 Input Parameters: 1883 + mat - the matrix 1884 . dim - dimension of the grid 1, 2, or 3 1885 . dims - number of grid points in x, y, and z direction, including ghost points on your processor 1886 . starts - starting point of ghost nodes on your processor in x, y, and z direction 1887 - dof - number of degrees of freedom per node 1888 1889 Level: beginner 1890 1891 Notes: 1892 Inspired by the structured grid interface to the HYPRE package 1893 (www.llnl.gov/CASC/hyper) 1894 1895 For matrices generated with `DMCreateMatrix()` this routine is automatically called and so not needed by the 1896 user. 1897 1898 .seealso: [](ch_matrices), `Mat`, `MatStencil`, `MatSetOption()`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValuesBlocked()`, `MatSetValuesLocal()` 1899 `MatSetValues()`, `MatSetValuesBlockedStencil()`, `MatSetValuesStencil()` 1900 @*/ 1901 PetscErrorCode MatSetStencil(Mat mat, PetscInt dim, const PetscInt dims[], const PetscInt starts[], PetscInt dof) 1902 { 1903 PetscFunctionBegin; 1904 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 1905 PetscAssertPointer(dims, 3); 1906 PetscAssertPointer(starts, 4); 1907 1908 mat->stencil.dim = dim + (dof > 1); 1909 for (PetscInt i = 0; i < dim; i++) { 1910 mat->stencil.dims[i] = dims[dim - i - 1]; /* copy the values in backwards */ 1911 mat->stencil.starts[i] = starts[dim - i - 1]; 1912 } 1913 mat->stencil.dims[dim] = dof; 1914 mat->stencil.starts[dim] = 0; 1915 mat->stencil.noc = (PetscBool)(dof == 1); 1916 PetscFunctionReturn(PETSC_SUCCESS); 1917 } 1918 1919 /*@C 1920 MatSetValuesBlocked - Inserts or adds a block of values into a matrix. 1921 1922 Not Collective 1923 1924 Input Parameters: 1925 + mat - the matrix 1926 . v - a logically two-dimensional array of values 1927 . m - the number of block rows 1928 . idxm - the global block indices 1929 . n - the number of block columns 1930 . idxn - the global block indices 1931 - addv - either `ADD_VALUES` to add values to any existing entries, or `INSERT_VALUES` replaces existing entries with new values 1932 1933 Level: intermediate 1934 1935 Notes: 1936 If you create the matrix yourself (that is not with a call to `DMCreateMatrix()`) then you MUST call 1937 MatXXXXSetPreallocation() or `MatSetUp()` before using this routine. 1938 1939 The `m` and `n` count the NUMBER of blocks in the row direction and column direction, 1940 NOT the total number of rows/columns; for example, if the block size is 2 and 1941 you are passing in values for rows 2,3,4,5 then m would be 2 (not 4). 1942 The values in idxm would be 1 2; that is the first index for each block divided by 1943 the block size. 1944 1945 You must call `MatSetBlockSize()` when constructing this matrix (before 1946 preallocating it). 1947 1948 By default the values, `v`, are row-oriented, so the layout of 1949 `v` is the same as for `MatSetValues()`. See `MatSetOption()` for other options. 1950 1951 Calls to `MatSetValuesBlocked()` with the `INSERT_VALUES` and `ADD_VALUES` 1952 options cannot be mixed without intervening calls to the assembly 1953 routines. 1954 1955 `MatSetValuesBlocked()` uses 0-based row and column numbers in Fortran 1956 as well as in C. 1957 1958 Negative indices may be passed in `idxm` and `idxn`, these rows and columns are 1959 simply ignored. This allows easily inserting element stiffness matrices 1960 with homogeneous Dirichlet boundary conditions that you don't want represented 1961 in the matrix. 1962 1963 Each time an entry is set within a sparse matrix via `MatSetValues()`, 1964 internal searching must be done to determine where to place the 1965 data in the matrix storage space. By instead inserting blocks of 1966 entries via `MatSetValuesBlocked()`, the overhead of matrix assembly is 1967 reduced. 1968 1969 Example: 1970 .vb 1971 Suppose m=n=2 and block size(bs) = 2 The array is 1972 1973 1 2 | 3 4 1974 5 6 | 7 8 1975 - - - | - - - 1976 9 10 | 11 12 1977 13 14 | 15 16 1978 1979 v[] should be passed in like 1980 v[] = [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16] 1981 1982 If you are not using row oriented storage of v (that is you called MatSetOption(mat,MAT_ROW_ORIENTED,PETSC_FALSE)) then 1983 v[] = [1,5,9,13,2,6,10,14,3,7,11,15,4,8,12,16] 1984 .ve 1985 1986 .seealso: [](ch_matrices), `Mat`, `MatSetBlockSize()`, `MatSetOption()`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValues()`, `MatSetValuesBlockedLocal()` 1987 @*/ 1988 PetscErrorCode MatSetValuesBlocked(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], const PetscScalar v[], InsertMode addv) 1989 { 1990 PetscFunctionBeginHot; 1991 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 1992 PetscValidType(mat, 1); 1993 if (!m || !n) PetscFunctionReturn(PETSC_SUCCESS); /* no values to insert */ 1994 PetscAssertPointer(idxm, 3); 1995 PetscAssertPointer(idxn, 5); 1996 MatCheckPreallocated(mat, 1); 1997 if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 1998 else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 1999 if (PetscDefined(USE_DEBUG)) { 2000 PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 2001 PetscCheck(mat->ops->setvaluesblocked || mat->ops->setvalues, PETSC_COMM_SELF, PETSC_ERR_SUP, "Mat type %s", ((PetscObject)mat)->type_name); 2002 } 2003 if (PetscDefined(USE_DEBUG)) { 2004 PetscInt rbs, cbs, M, N, i; 2005 PetscCall(MatGetBlockSizes(mat, &rbs, &cbs)); 2006 PetscCall(MatGetSize(mat, &M, &N)); 2007 for (i = 0; i < m; i++) PetscCheck(idxm[i] * rbs < M, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row block index %" PetscInt_FMT " (index %" PetscInt_FMT ") greater than row length %" PetscInt_FMT, i, idxm[i], M); 2008 for (i = 0; i < n; i++) PetscCheck(idxn[i] * cbs < N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column block index %" PetscInt_FMT " (index %" PetscInt_FMT ") great than column length %" PetscInt_FMT, i, idxn[i], N); 2009 } 2010 if (mat->assembled) { 2011 mat->was_assembled = PETSC_TRUE; 2012 mat->assembled = PETSC_FALSE; 2013 } 2014 PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0)); 2015 if (mat->ops->setvaluesblocked) { 2016 PetscUseTypeMethod(mat, setvaluesblocked, m, idxm, n, idxn, v, addv); 2017 } else { 2018 PetscInt buf[8192], *bufr = NULL, *bufc = NULL, *iidxm, *iidxn; 2019 PetscInt i, j, bs, cbs; 2020 2021 PetscCall(MatGetBlockSizes(mat, &bs, &cbs)); 2022 if ((m * bs + n * cbs) <= (PetscInt)PETSC_STATIC_ARRAY_LENGTH(buf)) { 2023 iidxm = buf; 2024 iidxn = buf + m * bs; 2025 } else { 2026 PetscCall(PetscMalloc2(m * bs, &bufr, n * cbs, &bufc)); 2027 iidxm = bufr; 2028 iidxn = bufc; 2029 } 2030 for (i = 0; i < m; i++) { 2031 for (j = 0; j < bs; j++) iidxm[i * bs + j] = bs * idxm[i] + j; 2032 } 2033 if (m != n || bs != cbs || idxm != idxn) { 2034 for (i = 0; i < n; i++) { 2035 for (j = 0; j < cbs; j++) iidxn[i * cbs + j] = cbs * idxn[i] + j; 2036 } 2037 } else iidxn = iidxm; 2038 PetscCall(MatSetValues(mat, m * bs, iidxm, n * cbs, iidxn, v, addv)); 2039 PetscCall(PetscFree2(bufr, bufc)); 2040 } 2041 PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0)); 2042 PetscFunctionReturn(PETSC_SUCCESS); 2043 } 2044 2045 /*@C 2046 MatGetValues - Gets a block of local values from a matrix. 2047 2048 Not Collective; can only return values that are owned by the give process 2049 2050 Input Parameters: 2051 + mat - the matrix 2052 . v - a logically two-dimensional array for storing the values 2053 . m - the number of rows 2054 . idxm - the global indices of the rows 2055 . n - the number of columns 2056 - idxn - the global indices of the columns 2057 2058 Level: advanced 2059 2060 Notes: 2061 The user must allocate space (m*n `PetscScalar`s) for the values, `v`. 2062 The values, `v`, are then returned in a row-oriented format, 2063 analogous to that used by default in `MatSetValues()`. 2064 2065 `MatGetValues()` uses 0-based row and column numbers in 2066 Fortran as well as in C. 2067 2068 `MatGetValues()` requires that the matrix has been assembled 2069 with `MatAssemblyBegin()`/`MatAssemblyEnd()`. Thus, calls to 2070 `MatSetValues()` and `MatGetValues()` CANNOT be made in succession 2071 without intermediate matrix assembly. 2072 2073 Negative row or column indices will be ignored and those locations in `v` will be 2074 left unchanged. 2075 2076 For the standard row-based matrix formats, `idxm` can only contain rows owned by the requesting MPI process. 2077 That is, rows with global index greater than or equal to rstart and less than rend where rstart and rend are obtainable 2078 from `MatGetOwnershipRange`(mat,&rstart,&rend). 2079 2080 .seealso: [](ch_matrices), `Mat`, `MatGetRow()`, `MatCreateSubMatrices()`, `MatSetValues()`, `MatGetOwnershipRange()`, `MatGetValuesLocal()`, `MatGetValue()` 2081 @*/ 2082 PetscErrorCode MatGetValues(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 2083 { 2084 PetscFunctionBegin; 2085 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 2086 PetscValidType(mat, 1); 2087 if (!m || !n) PetscFunctionReturn(PETSC_SUCCESS); 2088 PetscAssertPointer(idxm, 3); 2089 PetscAssertPointer(idxn, 5); 2090 PetscAssertPointer(v, 6); 2091 PetscCheck(mat->assembled, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 2092 PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 2093 MatCheckPreallocated(mat, 1); 2094 2095 PetscCall(PetscLogEventBegin(MAT_GetValues, mat, 0, 0, 0)); 2096 PetscUseTypeMethod(mat, getvalues, m, idxm, n, idxn, v); 2097 PetscCall(PetscLogEventEnd(MAT_GetValues, mat, 0, 0, 0)); 2098 PetscFunctionReturn(PETSC_SUCCESS); 2099 } 2100 2101 /*@C 2102 MatGetValuesLocal - retrieves values from certain locations in a matrix using the local numbering of the indices 2103 defined previously by `MatSetLocalToGlobalMapping()` 2104 2105 Not Collective 2106 2107 Input Parameters: 2108 + mat - the matrix 2109 . nrow - number of rows 2110 . irow - the row local indices 2111 . ncol - number of columns 2112 - icol - the column local indices 2113 2114 Output Parameter: 2115 . y - a logically two-dimensional array of values 2116 2117 Level: advanced 2118 2119 Notes: 2120 If you create the matrix yourself (that is not with a call to `DMCreateMatrix()`) then you MUST call `MatSetLocalToGlobalMapping()` before using this routine. 2121 2122 This routine can only return values that are owned by the requesting MPI process. That is, for standard matrix formats, rows that, in the global numbering, 2123 are greater than or equal to rstart and less than rend where rstart and rend are obtainable from `MatGetOwnershipRange`(mat,&rstart,&rend). One can 2124 determine if the resulting global row associated with the local row r is owned by the requesting MPI process by applying the `ISLocalToGlobalMapping` set 2125 with `MatSetLocalToGlobalMapping()`. 2126 2127 Developer Note: 2128 This is labelled with C so does not automatically generate Fortran stubs and interfaces 2129 because it requires multiple Fortran interfaces depending on which arguments are scalar or arrays. 2130 2131 .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValues()`, `MatSetLocalToGlobalMapping()`, 2132 `MatSetValuesLocal()`, `MatGetValues()` 2133 @*/ 2134 PetscErrorCode MatGetValuesLocal(Mat mat, PetscInt nrow, const PetscInt irow[], PetscInt ncol, const PetscInt icol[], PetscScalar y[]) 2135 { 2136 PetscFunctionBeginHot; 2137 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 2138 PetscValidType(mat, 1); 2139 MatCheckPreallocated(mat, 1); 2140 if (!nrow || !ncol) PetscFunctionReturn(PETSC_SUCCESS); /* no values to retrieve */ 2141 PetscAssertPointer(irow, 3); 2142 PetscAssertPointer(icol, 5); 2143 if (PetscDefined(USE_DEBUG)) { 2144 PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 2145 PetscCheck(mat->ops->getvalueslocal || mat->ops->getvalues, PETSC_COMM_SELF, PETSC_ERR_SUP, "Mat type %s", ((PetscObject)mat)->type_name); 2146 } 2147 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 2148 PetscCall(PetscLogEventBegin(MAT_GetValues, mat, 0, 0, 0)); 2149 if (mat->ops->getvalueslocal) PetscUseTypeMethod(mat, getvalueslocal, nrow, irow, ncol, icol, y); 2150 else { 2151 PetscInt buf[8192], *bufr = NULL, *bufc = NULL, *irowm, *icolm; 2152 if ((nrow + ncol) <= (PetscInt)PETSC_STATIC_ARRAY_LENGTH(buf)) { 2153 irowm = buf; 2154 icolm = buf + nrow; 2155 } else { 2156 PetscCall(PetscMalloc2(nrow, &bufr, ncol, &bufc)); 2157 irowm = bufr; 2158 icolm = bufc; 2159 } 2160 PetscCheck(mat->rmap->mapping, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "MatGetValuesLocal() cannot proceed without local-to-global row mapping (See MatSetLocalToGlobalMapping())."); 2161 PetscCheck(mat->cmap->mapping, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "MatGetValuesLocal() cannot proceed without local-to-global column mapping (See MatSetLocalToGlobalMapping())."); 2162 PetscCall(ISLocalToGlobalMappingApply(mat->rmap->mapping, nrow, irow, irowm)); 2163 PetscCall(ISLocalToGlobalMappingApply(mat->cmap->mapping, ncol, icol, icolm)); 2164 PetscCall(MatGetValues(mat, nrow, irowm, ncol, icolm, y)); 2165 PetscCall(PetscFree2(bufr, bufc)); 2166 } 2167 PetscCall(PetscLogEventEnd(MAT_GetValues, mat, 0, 0, 0)); 2168 PetscFunctionReturn(PETSC_SUCCESS); 2169 } 2170 2171 /*@ 2172 MatSetValuesBatch - Adds (`ADD_VALUES`) many blocks of values into a matrix at once. The blocks must all be square and 2173 the same size. Currently, this can only be called once and creates the given matrix. 2174 2175 Not Collective 2176 2177 Input Parameters: 2178 + mat - the matrix 2179 . nb - the number of blocks 2180 . bs - the number of rows (and columns) in each block 2181 . rows - a concatenation of the rows for each block 2182 - v - a concatenation of logically two-dimensional arrays of values 2183 2184 Level: advanced 2185 2186 Notes: 2187 `MatSetPreallocationCOO()` and `MatSetValuesCOO()` may be a better way to provide the values 2188 2189 In the future, we will extend this routine to handle rectangular blocks, and to allow multiple calls for a given matrix. 2190 2191 .seealso: [](ch_matrices), `Mat`, `MatSetOption()`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValuesBlocked()`, `MatSetValuesLocal()`, 2192 `InsertMode`, `INSERT_VALUES`, `ADD_VALUES`, `MatSetValues()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 2193 @*/ 2194 PetscErrorCode MatSetValuesBatch(Mat mat, PetscInt nb, PetscInt bs, PetscInt rows[], const PetscScalar v[]) 2195 { 2196 PetscFunctionBegin; 2197 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 2198 PetscValidType(mat, 1); 2199 PetscAssertPointer(rows, 4); 2200 PetscAssertPointer(v, 5); 2201 PetscAssert(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 2202 2203 PetscCall(PetscLogEventBegin(MAT_SetValuesBatch, mat, 0, 0, 0)); 2204 if (mat->ops->setvaluesbatch) PetscUseTypeMethod(mat, setvaluesbatch, nb, bs, rows, v); 2205 else { 2206 for (PetscInt b = 0; b < nb; ++b) PetscCall(MatSetValues(mat, bs, &rows[b * bs], bs, &rows[b * bs], &v[b * bs * bs], ADD_VALUES)); 2207 } 2208 PetscCall(PetscLogEventEnd(MAT_SetValuesBatch, mat, 0, 0, 0)); 2209 PetscFunctionReturn(PETSC_SUCCESS); 2210 } 2211 2212 /*@ 2213 MatSetLocalToGlobalMapping - Sets a local-to-global numbering for use by 2214 the routine `MatSetValuesLocal()` to allow users to insert matrix entries 2215 using a local (per-processor) numbering. 2216 2217 Not Collective 2218 2219 Input Parameters: 2220 + x - the matrix 2221 . rmapping - row mapping created with `ISLocalToGlobalMappingCreate()` or `ISLocalToGlobalMappingCreateIS()` 2222 - cmapping - column mapping 2223 2224 Level: intermediate 2225 2226 Note: 2227 If the matrix is obtained with `DMCreateMatrix()` then this may already have been called on the matrix 2228 2229 .seealso: [](ch_matrices), `Mat`, `DM`, `DMCreateMatrix()`, `MatGetLocalToGlobalMapping()`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValues()`, `MatSetValuesLocal()`, `MatGetValuesLocal()` 2230 @*/ 2231 PetscErrorCode MatSetLocalToGlobalMapping(Mat x, ISLocalToGlobalMapping rmapping, ISLocalToGlobalMapping cmapping) 2232 { 2233 PetscFunctionBegin; 2234 PetscValidHeaderSpecific(x, MAT_CLASSID, 1); 2235 PetscValidType(x, 1); 2236 if (rmapping) PetscValidHeaderSpecific(rmapping, IS_LTOGM_CLASSID, 2); 2237 if (cmapping) PetscValidHeaderSpecific(cmapping, IS_LTOGM_CLASSID, 3); 2238 if (x->ops->setlocaltoglobalmapping) PetscUseTypeMethod(x, setlocaltoglobalmapping, rmapping, cmapping); 2239 else { 2240 PetscCall(PetscLayoutSetISLocalToGlobalMapping(x->rmap, rmapping)); 2241 PetscCall(PetscLayoutSetISLocalToGlobalMapping(x->cmap, cmapping)); 2242 } 2243 PetscFunctionReturn(PETSC_SUCCESS); 2244 } 2245 2246 /*@ 2247 MatGetLocalToGlobalMapping - Gets the local-to-global numbering set by `MatSetLocalToGlobalMapping()` 2248 2249 Not Collective 2250 2251 Input Parameter: 2252 . A - the matrix 2253 2254 Output Parameters: 2255 + rmapping - row mapping 2256 - cmapping - column mapping 2257 2258 Level: advanced 2259 2260 .seealso: [](ch_matrices), `Mat`, `MatSetLocalToGlobalMapping()`, `MatSetValuesLocal()` 2261 @*/ 2262 PetscErrorCode MatGetLocalToGlobalMapping(Mat A, ISLocalToGlobalMapping *rmapping, ISLocalToGlobalMapping *cmapping) 2263 { 2264 PetscFunctionBegin; 2265 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 2266 PetscValidType(A, 1); 2267 if (rmapping) { 2268 PetscAssertPointer(rmapping, 2); 2269 *rmapping = A->rmap->mapping; 2270 } 2271 if (cmapping) { 2272 PetscAssertPointer(cmapping, 3); 2273 *cmapping = A->cmap->mapping; 2274 } 2275 PetscFunctionReturn(PETSC_SUCCESS); 2276 } 2277 2278 /*@ 2279 MatSetLayouts - Sets the `PetscLayout` objects for rows and columns of a matrix 2280 2281 Logically Collective 2282 2283 Input Parameters: 2284 + A - the matrix 2285 . rmap - row layout 2286 - cmap - column layout 2287 2288 Level: advanced 2289 2290 Note: 2291 The `PetscLayout` objects are usually created automatically for the matrix so this routine rarely needs to be called. 2292 2293 .seealso: [](ch_matrices), `Mat`, `PetscLayout`, `MatCreateVecs()`, `MatGetLocalToGlobalMapping()`, `MatGetLayouts()` 2294 @*/ 2295 PetscErrorCode MatSetLayouts(Mat A, PetscLayout rmap, PetscLayout cmap) 2296 { 2297 PetscFunctionBegin; 2298 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 2299 PetscCall(PetscLayoutReference(rmap, &A->rmap)); 2300 PetscCall(PetscLayoutReference(cmap, &A->cmap)); 2301 PetscFunctionReturn(PETSC_SUCCESS); 2302 } 2303 2304 /*@ 2305 MatGetLayouts - Gets the `PetscLayout` objects for rows and columns 2306 2307 Not Collective 2308 2309 Input Parameter: 2310 . A - the matrix 2311 2312 Output Parameters: 2313 + rmap - row layout 2314 - cmap - column layout 2315 2316 Level: advanced 2317 2318 .seealso: [](ch_matrices), `Mat`, [Matrix Layouts](sec_matlayout), `PetscLayout`, `MatCreateVecs()`, `MatGetLocalToGlobalMapping()`, `MatSetLayouts()` 2319 @*/ 2320 PetscErrorCode MatGetLayouts(Mat A, PetscLayout *rmap, PetscLayout *cmap) 2321 { 2322 PetscFunctionBegin; 2323 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 2324 PetscValidType(A, 1); 2325 if (rmap) { 2326 PetscAssertPointer(rmap, 2); 2327 *rmap = A->rmap; 2328 } 2329 if (cmap) { 2330 PetscAssertPointer(cmap, 3); 2331 *cmap = A->cmap; 2332 } 2333 PetscFunctionReturn(PETSC_SUCCESS); 2334 } 2335 2336 /*@C 2337 MatSetValuesLocal - Inserts or adds values into certain locations of a matrix, 2338 using a local numbering of the rows and columns. 2339 2340 Not Collective 2341 2342 Input Parameters: 2343 + mat - the matrix 2344 . nrow - number of rows 2345 . irow - the row local indices 2346 . ncol - number of columns 2347 . icol - the column local indices 2348 . y - a logically two-dimensional array of values 2349 - addv - either `INSERT_VALUES` to add values to any existing entries, or `INSERT_VALUES` to replace existing entries with new values 2350 2351 Level: intermediate 2352 2353 Notes: 2354 If you create the matrix yourself (that is not with a call to `DMCreateMatrix()`) then you MUST call `MatSetLocalToGlobalMapping()` before using this routine 2355 2356 Calls to `MatSetValuesLocal()` with the `INSERT_VALUES` and `ADD_VALUES` 2357 options cannot be mixed without intervening calls to the assembly 2358 routines. 2359 2360 These values may be cached, so `MatAssemblyBegin()` and `MatAssemblyEnd()` 2361 MUST be called after all calls to `MatSetValuesLocal()` have been completed. 2362 2363 Developer Note: 2364 This is labeled with C so does not automatically generate Fortran stubs and interfaces 2365 because it requires multiple Fortran interfaces depending on which arguments are scalar or arrays. 2366 2367 .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, `MatSetValues()`, `MatSetLocalToGlobalMapping()`, 2368 `MatGetValuesLocal()` 2369 @*/ 2370 PetscErrorCode MatSetValuesLocal(Mat mat, PetscInt nrow, const PetscInt irow[], PetscInt ncol, const PetscInt icol[], const PetscScalar y[], InsertMode addv) 2371 { 2372 PetscFunctionBeginHot; 2373 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 2374 PetscValidType(mat, 1); 2375 MatCheckPreallocated(mat, 1); 2376 if (!nrow || !ncol) PetscFunctionReturn(PETSC_SUCCESS); /* no values to insert */ 2377 PetscAssertPointer(irow, 3); 2378 PetscAssertPointer(icol, 5); 2379 if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 2380 else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 2381 if (PetscDefined(USE_DEBUG)) { 2382 PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 2383 PetscCheck(mat->ops->setvalueslocal || mat->ops->setvalues, PETSC_COMM_SELF, PETSC_ERR_SUP, "Mat type %s", ((PetscObject)mat)->type_name); 2384 } 2385 2386 if (mat->assembled) { 2387 mat->was_assembled = PETSC_TRUE; 2388 mat->assembled = PETSC_FALSE; 2389 } 2390 PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0)); 2391 if (mat->ops->setvalueslocal) PetscUseTypeMethod(mat, setvalueslocal, nrow, irow, ncol, icol, y, addv); 2392 else { 2393 PetscInt buf[8192], *bufr = NULL, *bufc = NULL; 2394 const PetscInt *irowm, *icolm; 2395 2396 if ((!mat->rmap->mapping && !mat->cmap->mapping) || (nrow + ncol) <= (PetscInt)PETSC_STATIC_ARRAY_LENGTH(buf)) { 2397 bufr = buf; 2398 bufc = buf + nrow; 2399 irowm = bufr; 2400 icolm = bufc; 2401 } else { 2402 PetscCall(PetscMalloc2(nrow, &bufr, ncol, &bufc)); 2403 irowm = bufr; 2404 icolm = bufc; 2405 } 2406 if (mat->rmap->mapping) PetscCall(ISLocalToGlobalMappingApply(mat->rmap->mapping, nrow, irow, bufr)); 2407 else irowm = irow; 2408 if (mat->cmap->mapping) { 2409 if (mat->cmap->mapping != mat->rmap->mapping || ncol != nrow || icol != irow) { 2410 PetscCall(ISLocalToGlobalMappingApply(mat->cmap->mapping, ncol, icol, bufc)); 2411 } else icolm = irowm; 2412 } else icolm = icol; 2413 PetscCall(MatSetValues(mat, nrow, irowm, ncol, icolm, y, addv)); 2414 if (bufr != buf) PetscCall(PetscFree2(bufr, bufc)); 2415 } 2416 PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0)); 2417 PetscFunctionReturn(PETSC_SUCCESS); 2418 } 2419 2420 /*@C 2421 MatSetValuesBlockedLocal - Inserts or adds values into certain locations of a matrix, 2422 using a local ordering of the nodes a block at a time. 2423 2424 Not Collective 2425 2426 Input Parameters: 2427 + mat - the matrix 2428 . nrow - number of rows 2429 . irow - the row local indices 2430 . ncol - number of columns 2431 . icol - the column local indices 2432 . y - a logically two-dimensional array of values 2433 - addv - either `ADD_VALUES` to add values to any existing entries, or `INSERT_VALUES` to replace existing entries with new values 2434 2435 Level: intermediate 2436 2437 Notes: 2438 If you create the matrix yourself (that is not with a call to `DMCreateMatrix()`) then you MUST call `MatSetBlockSize()` and `MatSetLocalToGlobalMapping()` 2439 before using this routineBefore calling `MatSetValuesLocal()`, the user must first set the 2440 2441 Calls to `MatSetValuesBlockedLocal()` with the `INSERT_VALUES` and `ADD_VALUES` 2442 options cannot be mixed without intervening calls to the assembly 2443 routines. 2444 2445 These values may be cached, so `MatAssemblyBegin()` and `MatAssemblyEnd()` 2446 MUST be called after all calls to `MatSetValuesBlockedLocal()` have been completed. 2447 2448 Developer Note: 2449 This is labeled with C so does not automatically generate Fortran stubs and interfaces 2450 because it requires multiple Fortran interfaces depending on which arguments are scalar or arrays. 2451 2452 .seealso: [](ch_matrices), `Mat`, `MatSetBlockSize()`, `MatSetLocalToGlobalMapping()`, `MatAssemblyBegin()`, `MatAssemblyEnd()`, 2453 `MatSetValuesLocal()`, `MatSetValuesBlocked()` 2454 @*/ 2455 PetscErrorCode MatSetValuesBlockedLocal(Mat mat, PetscInt nrow, const PetscInt irow[], PetscInt ncol, const PetscInt icol[], const PetscScalar y[], InsertMode addv) 2456 { 2457 PetscFunctionBeginHot; 2458 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 2459 PetscValidType(mat, 1); 2460 MatCheckPreallocated(mat, 1); 2461 if (!nrow || !ncol) PetscFunctionReturn(PETSC_SUCCESS); /* no values to insert */ 2462 PetscAssertPointer(irow, 3); 2463 PetscAssertPointer(icol, 5); 2464 if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 2465 else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 2466 if (PetscDefined(USE_DEBUG)) { 2467 PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 2468 PetscCheck(mat->ops->setvaluesblockedlocal || mat->ops->setvaluesblocked || mat->ops->setvalueslocal || mat->ops->setvalues, PETSC_COMM_SELF, PETSC_ERR_SUP, "Mat type %s", ((PetscObject)mat)->type_name); 2469 } 2470 2471 if (mat->assembled) { 2472 mat->was_assembled = PETSC_TRUE; 2473 mat->assembled = PETSC_FALSE; 2474 } 2475 if (PetscUnlikelyDebug(mat->rmap->mapping)) { /* Condition on the mapping existing, because MatSetValuesBlockedLocal_IS does not require it to be set. */ 2476 PetscInt irbs, rbs; 2477 PetscCall(MatGetBlockSizes(mat, &rbs, NULL)); 2478 PetscCall(ISLocalToGlobalMappingGetBlockSize(mat->rmap->mapping, &irbs)); 2479 PetscCheck(rbs == irbs, PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "Different row block sizes! mat %" PetscInt_FMT ", row l2g map %" PetscInt_FMT, rbs, irbs); 2480 } 2481 if (PetscUnlikelyDebug(mat->cmap->mapping)) { 2482 PetscInt icbs, cbs; 2483 PetscCall(MatGetBlockSizes(mat, NULL, &cbs)); 2484 PetscCall(ISLocalToGlobalMappingGetBlockSize(mat->cmap->mapping, &icbs)); 2485 PetscCheck(cbs == icbs, PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "Different col block sizes! mat %" PetscInt_FMT ", col l2g map %" PetscInt_FMT, cbs, icbs); 2486 } 2487 PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0)); 2488 if (mat->ops->setvaluesblockedlocal) PetscUseTypeMethod(mat, setvaluesblockedlocal, nrow, irow, ncol, icol, y, addv); 2489 else { 2490 PetscInt buf[8192], *bufr = NULL, *bufc = NULL; 2491 const PetscInt *irowm, *icolm; 2492 2493 if ((!mat->rmap->mapping && !mat->cmap->mapping) || (nrow + ncol) <= ((PetscInt)PETSC_STATIC_ARRAY_LENGTH(buf))) { 2494 bufr = buf; 2495 bufc = buf + nrow; 2496 irowm = bufr; 2497 icolm = bufc; 2498 } else { 2499 PetscCall(PetscMalloc2(nrow, &bufr, ncol, &bufc)); 2500 irowm = bufr; 2501 icolm = bufc; 2502 } 2503 if (mat->rmap->mapping) PetscCall(ISLocalToGlobalMappingApplyBlock(mat->rmap->mapping, nrow, irow, bufr)); 2504 else irowm = irow; 2505 if (mat->cmap->mapping) { 2506 if (mat->cmap->mapping != mat->rmap->mapping || ncol != nrow || icol != irow) { 2507 PetscCall(ISLocalToGlobalMappingApplyBlock(mat->cmap->mapping, ncol, icol, bufc)); 2508 } else icolm = irowm; 2509 } else icolm = icol; 2510 PetscCall(MatSetValuesBlocked(mat, nrow, irowm, ncol, icolm, y, addv)); 2511 if (bufr != buf) PetscCall(PetscFree2(bufr, bufc)); 2512 } 2513 PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0)); 2514 PetscFunctionReturn(PETSC_SUCCESS); 2515 } 2516 2517 /*@ 2518 MatMultDiagonalBlock - Computes the matrix-vector product, $y = Dx$. Where `D` is defined by the inode or block structure of the diagonal 2519 2520 Collective 2521 2522 Input Parameters: 2523 + mat - the matrix 2524 - x - the vector to be multiplied 2525 2526 Output Parameter: 2527 . y - the result 2528 2529 Level: developer 2530 2531 Note: 2532 The vectors `x` and `y` cannot be the same. I.e., one cannot 2533 call `MatMultDiagonalBlock`(A,y,y). 2534 2535 .seealso: [](ch_matrices), `Mat`, `MatMult()`, `MatMultTranspose()`, `MatMultAdd()`, `MatMultTransposeAdd()` 2536 @*/ 2537 PetscErrorCode MatMultDiagonalBlock(Mat mat, Vec x, Vec y) 2538 { 2539 PetscFunctionBegin; 2540 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 2541 PetscValidType(mat, 1); 2542 PetscValidHeaderSpecific(x, VEC_CLASSID, 2); 2543 PetscValidHeaderSpecific(y, VEC_CLASSID, 3); 2544 2545 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 2546 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 2547 PetscCheck(x != y, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "x and y must be different vectors"); 2548 MatCheckPreallocated(mat, 1); 2549 2550 PetscUseTypeMethod(mat, multdiagonalblock, x, y); 2551 PetscCall(PetscObjectStateIncrease((PetscObject)y)); 2552 PetscFunctionReturn(PETSC_SUCCESS); 2553 } 2554 2555 /*@ 2556 MatMult - Computes the matrix-vector product, $y = Ax$. 2557 2558 Neighbor-wise Collective 2559 2560 Input Parameters: 2561 + mat - the matrix 2562 - x - the vector to be multiplied 2563 2564 Output Parameter: 2565 . y - the result 2566 2567 Level: beginner 2568 2569 Note: 2570 The vectors `x` and `y` cannot be the same. I.e., one cannot 2571 call `MatMult`(A,y,y). 2572 2573 .seealso: [](ch_matrices), `Mat`, `MatMultTranspose()`, `MatMultAdd()`, `MatMultTransposeAdd()` 2574 @*/ 2575 PetscErrorCode MatMult(Mat mat, Vec x, Vec y) 2576 { 2577 PetscFunctionBegin; 2578 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 2579 PetscValidType(mat, 1); 2580 PetscValidHeaderSpecific(x, VEC_CLASSID, 2); 2581 VecCheckAssembled(x); 2582 PetscValidHeaderSpecific(y, VEC_CLASSID, 3); 2583 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 2584 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 2585 PetscCheck(x != y, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "x and y must be different vectors"); 2586 PetscCheck(mat->cmap->N == x->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec x: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->cmap->N, x->map->N); 2587 PetscCheck(mat->rmap->N == y->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec y: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->N, y->map->N); 2588 PetscCheck(mat->cmap->n == x->map->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Mat mat,Vec x: local dim %" PetscInt_FMT " %" PetscInt_FMT, mat->cmap->n, x->map->n); 2589 PetscCheck(mat->rmap->n == y->map->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Mat mat,Vec y: local dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->n, y->map->n); 2590 PetscCall(VecSetErrorIfLocked(y, 3)); 2591 if (mat->erroriffailure) PetscCall(VecValidValues_Internal(x, 2, PETSC_TRUE)); 2592 MatCheckPreallocated(mat, 1); 2593 2594 PetscCall(VecLockReadPush(x)); 2595 PetscCall(PetscLogEventBegin(MAT_Mult, mat, x, y, 0)); 2596 PetscUseTypeMethod(mat, mult, x, y); 2597 PetscCall(PetscLogEventEnd(MAT_Mult, mat, x, y, 0)); 2598 if (mat->erroriffailure) PetscCall(VecValidValues_Internal(y, 3, PETSC_FALSE)); 2599 PetscCall(VecLockReadPop(x)); 2600 PetscFunctionReturn(PETSC_SUCCESS); 2601 } 2602 2603 /*@ 2604 MatMultTranspose - Computes matrix transpose times a vector $y = A^T * x$. 2605 2606 Neighbor-wise Collective 2607 2608 Input Parameters: 2609 + mat - the matrix 2610 - x - the vector to be multiplied 2611 2612 Output Parameter: 2613 . y - the result 2614 2615 Level: beginner 2616 2617 Notes: 2618 The vectors `x` and `y` cannot be the same. I.e., one cannot 2619 call `MatMultTranspose`(A,y,y). 2620 2621 For complex numbers this does NOT compute the Hermitian (complex conjugate) transpose multiple, 2622 use `MatMultHermitianTranspose()` 2623 2624 .seealso: [](ch_matrices), `Mat`, `MatMult()`, `MatMultAdd()`, `MatMultTransposeAdd()`, `MatMultHermitianTranspose()`, `MatTranspose()` 2625 @*/ 2626 PetscErrorCode MatMultTranspose(Mat mat, Vec x, Vec y) 2627 { 2628 PetscErrorCode (*op)(Mat, Vec, Vec) = NULL; 2629 2630 PetscFunctionBegin; 2631 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 2632 PetscValidType(mat, 1); 2633 PetscValidHeaderSpecific(x, VEC_CLASSID, 2); 2634 VecCheckAssembled(x); 2635 PetscValidHeaderSpecific(y, VEC_CLASSID, 3); 2636 2637 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 2638 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 2639 PetscCheck(x != y, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "x and y must be different vectors"); 2640 PetscCheck(mat->cmap->N == y->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec y: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->cmap->N, y->map->N); 2641 PetscCheck(mat->rmap->N == x->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec x: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->N, x->map->N); 2642 PetscCheck(mat->cmap->n == y->map->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Mat mat,Vec y: local dim %" PetscInt_FMT " %" PetscInt_FMT, mat->cmap->n, y->map->n); 2643 PetscCheck(mat->rmap->n == x->map->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Mat mat,Vec x: local dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->n, x->map->n); 2644 if (mat->erroriffailure) PetscCall(VecValidValues_Internal(x, 2, PETSC_TRUE)); 2645 MatCheckPreallocated(mat, 1); 2646 2647 if (!mat->ops->multtranspose) { 2648 if (mat->symmetric == PETSC_BOOL3_TRUE && mat->ops->mult) op = mat->ops->mult; 2649 PetscCheck(op, PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "Matrix type %s does not have a multiply transpose defined or is symmetric and does not have a multiply defined", ((PetscObject)mat)->type_name); 2650 } else op = mat->ops->multtranspose; 2651 PetscCall(PetscLogEventBegin(MAT_MultTranspose, mat, x, y, 0)); 2652 PetscCall(VecLockReadPush(x)); 2653 PetscCall((*op)(mat, x, y)); 2654 PetscCall(VecLockReadPop(x)); 2655 PetscCall(PetscLogEventEnd(MAT_MultTranspose, mat, x, y, 0)); 2656 PetscCall(PetscObjectStateIncrease((PetscObject)y)); 2657 if (mat->erroriffailure) PetscCall(VecValidValues_Internal(y, 3, PETSC_FALSE)); 2658 PetscFunctionReturn(PETSC_SUCCESS); 2659 } 2660 2661 /*@ 2662 MatMultHermitianTranspose - Computes matrix Hermitian-transpose times a vector $y = A^H * x$. 2663 2664 Neighbor-wise Collective 2665 2666 Input Parameters: 2667 + mat - the matrix 2668 - x - the vector to be multiplied 2669 2670 Output Parameter: 2671 . y - the result 2672 2673 Level: beginner 2674 2675 Notes: 2676 The vectors `x` and `y` cannot be the same. I.e., one cannot 2677 call `MatMultHermitianTranspose`(A,y,y). 2678 2679 Also called the conjugate transpose, complex conjugate transpose, or adjoint. 2680 2681 For real numbers `MatMultTranspose()` and `MatMultHermitianTranspose()` are identical. 2682 2683 .seealso: [](ch_matrices), `Mat`, `MatMult()`, `MatMultAdd()`, `MatMultHermitianTransposeAdd()`, `MatMultTranspose()` 2684 @*/ 2685 PetscErrorCode MatMultHermitianTranspose(Mat mat, Vec x, Vec y) 2686 { 2687 PetscFunctionBegin; 2688 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 2689 PetscValidType(mat, 1); 2690 PetscValidHeaderSpecific(x, VEC_CLASSID, 2); 2691 PetscValidHeaderSpecific(y, VEC_CLASSID, 3); 2692 2693 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 2694 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 2695 PetscCheck(x != y, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "x and y must be different vectors"); 2696 PetscCheck(mat->cmap->N == y->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec y: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->cmap->N, y->map->N); 2697 PetscCheck(mat->rmap->N == x->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec x: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->N, x->map->N); 2698 PetscCheck(mat->cmap->n == y->map->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Mat mat,Vec y: local dim %" PetscInt_FMT " %" PetscInt_FMT, mat->cmap->n, y->map->n); 2699 PetscCheck(mat->rmap->n == x->map->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Mat mat,Vec x: local dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->n, x->map->n); 2700 MatCheckPreallocated(mat, 1); 2701 2702 PetscCall(PetscLogEventBegin(MAT_MultHermitianTranspose, mat, x, y, 0)); 2703 #if defined(PETSC_USE_COMPLEX) 2704 if (mat->ops->multhermitiantranspose || (mat->hermitian == PETSC_BOOL3_TRUE && mat->ops->mult)) { 2705 PetscCall(VecLockReadPush(x)); 2706 if (mat->ops->multhermitiantranspose) PetscUseTypeMethod(mat, multhermitiantranspose, x, y); 2707 else PetscUseTypeMethod(mat, mult, x, y); 2708 PetscCall(VecLockReadPop(x)); 2709 } else { 2710 Vec w; 2711 PetscCall(VecDuplicate(x, &w)); 2712 PetscCall(VecCopy(x, w)); 2713 PetscCall(VecConjugate(w)); 2714 PetscCall(MatMultTranspose(mat, w, y)); 2715 PetscCall(VecDestroy(&w)); 2716 PetscCall(VecConjugate(y)); 2717 } 2718 PetscCall(PetscObjectStateIncrease((PetscObject)y)); 2719 #else 2720 PetscCall(MatMultTranspose(mat, x, y)); 2721 #endif 2722 PetscCall(PetscLogEventEnd(MAT_MultHermitianTranspose, mat, x, y, 0)); 2723 PetscFunctionReturn(PETSC_SUCCESS); 2724 } 2725 2726 /*@ 2727 MatMultAdd - Computes $v3 = v2 + A * v1$. 2728 2729 Neighbor-wise Collective 2730 2731 Input Parameters: 2732 + mat - the matrix 2733 . v1 - the vector to be multiplied by `mat` 2734 - v2 - the vector to be added to the result 2735 2736 Output Parameter: 2737 . v3 - the result 2738 2739 Level: beginner 2740 2741 Note: 2742 The vectors `v1` and `v3` cannot be the same. I.e., one cannot 2743 call `MatMultAdd`(A,v1,v2,v1). 2744 2745 .seealso: [](ch_matrices), `Mat`, `MatMultTranspose()`, `MatMult()`, `MatMultTransposeAdd()` 2746 @*/ 2747 PetscErrorCode MatMultAdd(Mat mat, Vec v1, Vec v2, Vec v3) 2748 { 2749 PetscFunctionBegin; 2750 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 2751 PetscValidType(mat, 1); 2752 PetscValidHeaderSpecific(v1, VEC_CLASSID, 2); 2753 PetscValidHeaderSpecific(v2, VEC_CLASSID, 3); 2754 PetscValidHeaderSpecific(v3, VEC_CLASSID, 4); 2755 2756 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 2757 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 2758 PetscCheck(mat->cmap->N == v1->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec v1: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->cmap->N, v1->map->N); 2759 /* PetscCheck(mat->rmap->N == v2->map->N,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Mat mat,Vec v2: global dim %" PetscInt_FMT " %" PetscInt_FMT,mat->rmap->N,v2->map->N); 2760 PetscCheck(mat->rmap->N == v3->map->N,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Mat mat,Vec v3: global dim %" PetscInt_FMT " %" PetscInt_FMT,mat->rmap->N,v3->map->N); */ 2761 PetscCheck(mat->rmap->n == v3->map->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Mat mat,Vec v3: local dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->n, v3->map->n); 2762 PetscCheck(mat->rmap->n == v2->map->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Mat mat,Vec v2: local dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->n, v2->map->n); 2763 PetscCheck(v1 != v3, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_IDN, "v1 and v3 must be different vectors"); 2764 MatCheckPreallocated(mat, 1); 2765 2766 PetscCall(PetscLogEventBegin(MAT_MultAdd, mat, v1, v2, v3)); 2767 PetscCall(VecLockReadPush(v1)); 2768 PetscUseTypeMethod(mat, multadd, v1, v2, v3); 2769 PetscCall(VecLockReadPop(v1)); 2770 PetscCall(PetscLogEventEnd(MAT_MultAdd, mat, v1, v2, v3)); 2771 PetscCall(PetscObjectStateIncrease((PetscObject)v3)); 2772 PetscFunctionReturn(PETSC_SUCCESS); 2773 } 2774 2775 /*@ 2776 MatMultTransposeAdd - Computes $v3 = v2 + A^T * v1$. 2777 2778 Neighbor-wise Collective 2779 2780 Input Parameters: 2781 + mat - the matrix 2782 . v1 - the vector to be multiplied by the transpose of the matrix 2783 - v2 - the vector to be added to the result 2784 2785 Output Parameter: 2786 . v3 - the result 2787 2788 Level: beginner 2789 2790 Note: 2791 The vectors `v1` and `v3` cannot be the same. I.e., one cannot 2792 call `MatMultTransposeAdd`(A,v1,v2,v1). 2793 2794 .seealso: [](ch_matrices), `Mat`, `MatMultTranspose()`, `MatMultAdd()`, `MatMult()` 2795 @*/ 2796 PetscErrorCode MatMultTransposeAdd(Mat mat, Vec v1, Vec v2, Vec v3) 2797 { 2798 PetscErrorCode (*op)(Mat, Vec, Vec, Vec) = (!mat->ops->multtransposeadd && mat->symmetric) ? mat->ops->multadd : mat->ops->multtransposeadd; 2799 2800 PetscFunctionBegin; 2801 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 2802 PetscValidType(mat, 1); 2803 PetscValidHeaderSpecific(v1, VEC_CLASSID, 2); 2804 PetscValidHeaderSpecific(v2, VEC_CLASSID, 3); 2805 PetscValidHeaderSpecific(v3, VEC_CLASSID, 4); 2806 2807 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 2808 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 2809 PetscCheck(mat->rmap->N == v1->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec v1: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->N, v1->map->N); 2810 PetscCheck(mat->cmap->N == v2->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec v2: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->cmap->N, v2->map->N); 2811 PetscCheck(mat->cmap->N == v3->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec v3: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->cmap->N, v3->map->N); 2812 PetscCheck(v1 != v3, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_IDN, "v1 and v3 must be different vectors"); 2813 PetscCheck(op, PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "Mat type %s", ((PetscObject)mat)->type_name); 2814 MatCheckPreallocated(mat, 1); 2815 2816 PetscCall(PetscLogEventBegin(MAT_MultTransposeAdd, mat, v1, v2, v3)); 2817 PetscCall(VecLockReadPush(v1)); 2818 PetscCall((*op)(mat, v1, v2, v3)); 2819 PetscCall(VecLockReadPop(v1)); 2820 PetscCall(PetscLogEventEnd(MAT_MultTransposeAdd, mat, v1, v2, v3)); 2821 PetscCall(PetscObjectStateIncrease((PetscObject)v3)); 2822 PetscFunctionReturn(PETSC_SUCCESS); 2823 } 2824 2825 /*@ 2826 MatMultHermitianTransposeAdd - Computes $v3 = v2 + A^H * v1$. 2827 2828 Neighbor-wise Collective 2829 2830 Input Parameters: 2831 + mat - the matrix 2832 . v1 - the vector to be multiplied by the Hermitian transpose 2833 - v2 - the vector to be added to the result 2834 2835 Output Parameter: 2836 . v3 - the result 2837 2838 Level: beginner 2839 2840 Note: 2841 The vectors `v1` and `v3` cannot be the same. I.e., one cannot 2842 call `MatMultHermitianTransposeAdd`(A,v1,v2,v1). 2843 2844 .seealso: [](ch_matrices), `Mat`, `MatMultHermitianTranspose()`, `MatMultTranspose()`, `MatMultAdd()`, `MatMult()` 2845 @*/ 2846 PetscErrorCode MatMultHermitianTransposeAdd(Mat mat, Vec v1, Vec v2, Vec v3) 2847 { 2848 PetscFunctionBegin; 2849 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 2850 PetscValidType(mat, 1); 2851 PetscValidHeaderSpecific(v1, VEC_CLASSID, 2); 2852 PetscValidHeaderSpecific(v2, VEC_CLASSID, 3); 2853 PetscValidHeaderSpecific(v3, VEC_CLASSID, 4); 2854 2855 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 2856 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 2857 PetscCheck(v1 != v3, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_IDN, "v1 and v3 must be different vectors"); 2858 PetscCheck(mat->rmap->N == v1->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec v1: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->N, v1->map->N); 2859 PetscCheck(mat->cmap->N == v2->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec v2: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->cmap->N, v2->map->N); 2860 PetscCheck(mat->cmap->N == v3->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec v3: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->cmap->N, v3->map->N); 2861 MatCheckPreallocated(mat, 1); 2862 2863 PetscCall(PetscLogEventBegin(MAT_MultHermitianTransposeAdd, mat, v1, v2, v3)); 2864 PetscCall(VecLockReadPush(v1)); 2865 if (mat->ops->multhermitiantransposeadd) PetscUseTypeMethod(mat, multhermitiantransposeadd, v1, v2, v3); 2866 else { 2867 Vec w, z; 2868 PetscCall(VecDuplicate(v1, &w)); 2869 PetscCall(VecCopy(v1, w)); 2870 PetscCall(VecConjugate(w)); 2871 PetscCall(VecDuplicate(v3, &z)); 2872 PetscCall(MatMultTranspose(mat, w, z)); 2873 PetscCall(VecDestroy(&w)); 2874 PetscCall(VecConjugate(z)); 2875 if (v2 != v3) { 2876 PetscCall(VecWAXPY(v3, 1.0, v2, z)); 2877 } else { 2878 PetscCall(VecAXPY(v3, 1.0, z)); 2879 } 2880 PetscCall(VecDestroy(&z)); 2881 } 2882 PetscCall(VecLockReadPop(v1)); 2883 PetscCall(PetscLogEventEnd(MAT_MultHermitianTransposeAdd, mat, v1, v2, v3)); 2884 PetscCall(PetscObjectStateIncrease((PetscObject)v3)); 2885 PetscFunctionReturn(PETSC_SUCCESS); 2886 } 2887 2888 /*@C 2889 MatGetFactorType - gets the type of factorization a matrix is 2890 2891 Not Collective 2892 2893 Input Parameter: 2894 . mat - the matrix 2895 2896 Output Parameter: 2897 . t - the type, one of `MAT_FACTOR_NONE`, `MAT_FACTOR_LU`, `MAT_FACTOR_CHOLESKY`, `MAT_FACTOR_ILU`, `MAT_FACTOR_ICC,MAT_FACTOR_ILUDT`, `MAT_FACTOR_QR` 2898 2899 Level: intermediate 2900 2901 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatFactorType`, `MatGetFactor()`, `MatSetFactorType()`, `MAT_FACTOR_NONE`, `MAT_FACTOR_LU`, `MAT_FACTOR_CHOLESKY`, `MAT_FACTOR_ILU`, 2902 `MAT_FACTOR_ICC`,`MAT_FACTOR_ILUDT`, `MAT_FACTOR_QR` 2903 @*/ 2904 PetscErrorCode MatGetFactorType(Mat mat, MatFactorType *t) 2905 { 2906 PetscFunctionBegin; 2907 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 2908 PetscValidType(mat, 1); 2909 PetscAssertPointer(t, 2); 2910 *t = mat->factortype; 2911 PetscFunctionReturn(PETSC_SUCCESS); 2912 } 2913 2914 /*@C 2915 MatSetFactorType - sets the type of factorization a matrix is 2916 2917 Logically Collective 2918 2919 Input Parameters: 2920 + mat - the matrix 2921 - t - the type, one of `MAT_FACTOR_NONE`, `MAT_FACTOR_LU`, `MAT_FACTOR_CHOLESKY`, `MAT_FACTOR_ILU`, `MAT_FACTOR_ICC,MAT_FACTOR_ILUDT`, `MAT_FACTOR_QR` 2922 2923 Level: intermediate 2924 2925 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatFactorType`, `MatGetFactor()`, `MatGetFactorType()`, `MAT_FACTOR_NONE`, `MAT_FACTOR_LU`, `MAT_FACTOR_CHOLESKY`, `MAT_FACTOR_ILU`, 2926 `MAT_FACTOR_ICC`,`MAT_FACTOR_ILUDT`, `MAT_FACTOR_QR` 2927 @*/ 2928 PetscErrorCode MatSetFactorType(Mat mat, MatFactorType t) 2929 { 2930 PetscFunctionBegin; 2931 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 2932 PetscValidType(mat, 1); 2933 mat->factortype = t; 2934 PetscFunctionReturn(PETSC_SUCCESS); 2935 } 2936 2937 /*@C 2938 MatGetInfo - Returns information about matrix storage (number of 2939 nonzeros, memory, etc.). 2940 2941 Collective if `MAT_GLOBAL_MAX` or `MAT_GLOBAL_SUM` is used as the flag 2942 2943 Input Parameters: 2944 + mat - the matrix 2945 - flag - flag indicating the type of parameters to be returned (`MAT_LOCAL` - local matrix, `MAT_GLOBAL_MAX` - maximum over all processors, `MAT_GLOBAL_SUM` - sum over all processors) 2946 2947 Output Parameter: 2948 . info - matrix information context 2949 2950 Options Database Key: 2951 . -mat_view ::ascii_info - print matrix info to `PETSC_STDOUT` 2952 2953 Notes: 2954 The `MatInfo` context contains a variety of matrix data, including 2955 number of nonzeros allocated and used, number of mallocs during 2956 matrix assembly, etc. Additional information for factored matrices 2957 is provided (such as the fill ratio, number of mallocs during 2958 factorization, etc.). 2959 2960 Example: 2961 See the file ${PETSC_DIR}/include/petscmat.h for a complete list of 2962 data within the MatInfo context. For example, 2963 .vb 2964 MatInfo info; 2965 Mat A; 2966 double mal, nz_a, nz_u; 2967 2968 MatGetInfo(A, MAT_LOCAL, &info); 2969 mal = info.mallocs; 2970 nz_a = info.nz_allocated; 2971 .ve 2972 2973 Fortran users should declare info as a double precision 2974 array of dimension `MAT_INFO_SIZE`, and then extract the parameters 2975 of interest. See the file ${PETSC_DIR}/include/petsc/finclude/petscmat.h 2976 a complete list of parameter names. 2977 .vb 2978 double precision info(MAT_INFO_SIZE) 2979 double precision mal, nz_a 2980 Mat A 2981 integer ierr 2982 2983 call MatGetInfo(A, MAT_LOCAL, info, ierr) 2984 mal = info(MAT_INFO_MALLOCS) 2985 nz_a = info(MAT_INFO_NZ_ALLOCATED) 2986 .ve 2987 2988 Level: intermediate 2989 2990 Developer Note: 2991 The Fortran interface is not autogenerated as the 2992 interface definition cannot be generated correctly [due to `MatInfo` argument] 2993 2994 .seealso: [](ch_matrices), `Mat`, `MatInfo`, `MatStashGetInfo()` 2995 @*/ 2996 PetscErrorCode MatGetInfo(Mat mat, MatInfoType flag, MatInfo *info) 2997 { 2998 PetscFunctionBegin; 2999 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 3000 PetscValidType(mat, 1); 3001 PetscAssertPointer(info, 3); 3002 MatCheckPreallocated(mat, 1); 3003 PetscUseTypeMethod(mat, getinfo, flag, info); 3004 PetscFunctionReturn(PETSC_SUCCESS); 3005 } 3006 3007 /* 3008 This is used by external packages where it is not easy to get the info from the actual 3009 matrix factorization. 3010 */ 3011 PetscErrorCode MatGetInfo_External(Mat A, MatInfoType flag, MatInfo *info) 3012 { 3013 PetscFunctionBegin; 3014 PetscCall(PetscMemzero(info, sizeof(MatInfo))); 3015 PetscFunctionReturn(PETSC_SUCCESS); 3016 } 3017 3018 /*@C 3019 MatLUFactor - Performs in-place LU factorization of matrix. 3020 3021 Collective 3022 3023 Input Parameters: 3024 + mat - the matrix 3025 . row - row permutation 3026 . col - column permutation 3027 - info - options for factorization, includes 3028 .vb 3029 fill - expected fill as ratio of original fill. 3030 dtcol - pivot tolerance (0 no pivot, 1 full column pivoting) 3031 Run with the option -info to determine an optimal value to use 3032 .ve 3033 3034 Level: developer 3035 3036 Notes: 3037 Most users should employ the `KSP` interface for linear solvers 3038 instead of working directly with matrix algebra routines such as this. 3039 See, e.g., `KSPCreate()`. 3040 3041 This changes the state of the matrix to a factored matrix; it cannot be used 3042 for example with `MatSetValues()` unless one first calls `MatSetUnfactored()`. 3043 3044 This is really in-place only for dense matrices, the preferred approach is to use `MatGetFactor()`, `MatLUFactorSymbolic()`, and `MatLUFactorNumeric()` 3045 when not using `KSP`. 3046 3047 Developer Note: 3048 The Fortran interface is not autogenerated as the 3049 interface definition cannot be generated correctly [due to `MatFactorInfo`] 3050 3051 .seealso: [](ch_matrices), [Matrix Factorization](sec_matfactor), `Mat`, `MatFactorType`, `MatLUFactorSymbolic()`, `MatLUFactorNumeric()`, `MatCholeskyFactor()`, 3052 `MatGetOrdering()`, `MatSetUnfactored()`, `MatFactorInfo`, `MatGetFactor()` 3053 @*/ 3054 PetscErrorCode MatLUFactor(Mat mat, IS row, IS col, const MatFactorInfo *info) 3055 { 3056 MatFactorInfo tinfo; 3057 3058 PetscFunctionBegin; 3059 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 3060 if (row) PetscValidHeaderSpecific(row, IS_CLASSID, 2); 3061 if (col) PetscValidHeaderSpecific(col, IS_CLASSID, 3); 3062 if (info) PetscAssertPointer(info, 4); 3063 PetscValidType(mat, 1); 3064 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 3065 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 3066 MatCheckPreallocated(mat, 1); 3067 if (!info) { 3068 PetscCall(MatFactorInfoInitialize(&tinfo)); 3069 info = &tinfo; 3070 } 3071 3072 PetscCall(PetscLogEventBegin(MAT_LUFactor, mat, row, col, 0)); 3073 PetscUseTypeMethod(mat, lufactor, row, col, info); 3074 PetscCall(PetscLogEventEnd(MAT_LUFactor, mat, row, col, 0)); 3075 PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 3076 PetscFunctionReturn(PETSC_SUCCESS); 3077 } 3078 3079 /*@C 3080 MatILUFactor - Performs in-place ILU factorization of matrix. 3081 3082 Collective 3083 3084 Input Parameters: 3085 + mat - the matrix 3086 . row - row permutation 3087 . col - column permutation 3088 - info - structure containing 3089 .vb 3090 levels - number of levels of fill. 3091 expected fill - as ratio of original fill. 3092 1 or 0 - indicating force fill on diagonal (improves robustness for matrices 3093 missing diagonal entries) 3094 .ve 3095 3096 Level: developer 3097 3098 Notes: 3099 Most users should employ the `KSP` interface for linear solvers 3100 instead of working directly with matrix algebra routines such as this. 3101 See, e.g., `KSPCreate()`. 3102 3103 Probably really in-place only when level of fill is zero, otherwise allocates 3104 new space to store factored matrix and deletes previous memory. The preferred approach is to use `MatGetFactor()`, `MatILUFactorSymbolic()`, and `MatILUFactorNumeric()` 3105 when not using `KSP`. 3106 3107 Developer Note: 3108 The Fortran interface is not autogenerated as the 3109 interface definition cannot be generated correctly [due to MatFactorInfo] 3110 3111 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatILUFactorSymbolic()`, `MatLUFactorNumeric()`, `MatCholeskyFactor()`, `MatFactorInfo` 3112 @*/ 3113 PetscErrorCode MatILUFactor(Mat mat, IS row, IS col, const MatFactorInfo *info) 3114 { 3115 PetscFunctionBegin; 3116 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 3117 if (row) PetscValidHeaderSpecific(row, IS_CLASSID, 2); 3118 if (col) PetscValidHeaderSpecific(col, IS_CLASSID, 3); 3119 PetscAssertPointer(info, 4); 3120 PetscValidType(mat, 1); 3121 PetscCheck(mat->rmap->N == mat->cmap->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONG, "matrix must be square"); 3122 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 3123 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 3124 MatCheckPreallocated(mat, 1); 3125 3126 PetscCall(PetscLogEventBegin(MAT_ILUFactor, mat, row, col, 0)); 3127 PetscUseTypeMethod(mat, ilufactor, row, col, info); 3128 PetscCall(PetscLogEventEnd(MAT_ILUFactor, mat, row, col, 0)); 3129 PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 3130 PetscFunctionReturn(PETSC_SUCCESS); 3131 } 3132 3133 /*@C 3134 MatLUFactorSymbolic - Performs symbolic LU factorization of matrix. 3135 Call this routine before calling `MatLUFactorNumeric()` and after `MatGetFactor()`. 3136 3137 Collective 3138 3139 Input Parameters: 3140 + fact - the factor matrix obtained with `MatGetFactor()` 3141 . mat - the matrix 3142 . row - the row permutation 3143 . col - the column permutation 3144 - info - options for factorization, includes 3145 .vb 3146 fill - expected fill as ratio of original fill. Run with the option -info to determine an optimal value to use 3147 dtcol - pivot tolerance (0 no pivot, 1 full column pivoting) 3148 .ve 3149 3150 Level: developer 3151 3152 Notes: 3153 See [Matrix Factorization](sec_matfactor) for additional information about factorizations 3154 3155 Most users should employ the simplified `KSP` interface for linear solvers 3156 instead of working directly with matrix algebra routines such as this. 3157 See, e.g., `KSPCreate()`. 3158 3159 Developer Note: 3160 The Fortran interface is not autogenerated as the 3161 interface definition cannot be generated correctly [due to `MatFactorInfo`] 3162 3163 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatLUFactor()`, `MatLUFactorNumeric()`, `MatCholeskyFactor()`, `MatFactorInfo`, `MatFactorInfoInitialize()` 3164 @*/ 3165 PetscErrorCode MatLUFactorSymbolic(Mat fact, Mat mat, IS row, IS col, const MatFactorInfo *info) 3166 { 3167 MatFactorInfo tinfo; 3168 3169 PetscFunctionBegin; 3170 PetscValidHeaderSpecific(fact, MAT_CLASSID, 1); 3171 PetscValidHeaderSpecific(mat, MAT_CLASSID, 2); 3172 if (row) PetscValidHeaderSpecific(row, IS_CLASSID, 3); 3173 if (col) PetscValidHeaderSpecific(col, IS_CLASSID, 4); 3174 if (info) PetscAssertPointer(info, 5); 3175 PetscValidType(fact, 1); 3176 PetscValidType(mat, 2); 3177 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 3178 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 3179 MatCheckPreallocated(mat, 2); 3180 if (!info) { 3181 PetscCall(MatFactorInfoInitialize(&tinfo)); 3182 info = &tinfo; 3183 } 3184 3185 if (!fact->trivialsymbolic) PetscCall(PetscLogEventBegin(MAT_LUFactorSymbolic, mat, row, col, 0)); 3186 PetscUseTypeMethod(fact, lufactorsymbolic, mat, row, col, info); 3187 if (!fact->trivialsymbolic) PetscCall(PetscLogEventEnd(MAT_LUFactorSymbolic, mat, row, col, 0)); 3188 PetscCall(PetscObjectStateIncrease((PetscObject)fact)); 3189 PetscFunctionReturn(PETSC_SUCCESS); 3190 } 3191 3192 /*@C 3193 MatLUFactorNumeric - Performs numeric LU factorization of a matrix. 3194 Call this routine after first calling `MatLUFactorSymbolic()` and `MatGetFactor()`. 3195 3196 Collective 3197 3198 Input Parameters: 3199 + fact - the factor matrix obtained with `MatGetFactor()` 3200 . mat - the matrix 3201 - info - options for factorization 3202 3203 Level: developer 3204 3205 Notes: 3206 See `MatLUFactor()` for in-place factorization. See 3207 `MatCholeskyFactorNumeric()` for the symmetric, positive definite case. 3208 3209 Most users should employ the `KSP` interface for linear solvers 3210 instead of working directly with matrix algebra routines such as this. 3211 See, e.g., `KSPCreate()`. 3212 3213 Developer Note: 3214 The Fortran interface is not autogenerated as the 3215 interface definition cannot be generated correctly [due to `MatFactorInfo`] 3216 3217 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatFactorInfo`, `MatLUFactorSymbolic()`, `MatLUFactor()`, `MatCholeskyFactor()` 3218 @*/ 3219 PetscErrorCode MatLUFactorNumeric(Mat fact, Mat mat, const MatFactorInfo *info) 3220 { 3221 MatFactorInfo tinfo; 3222 3223 PetscFunctionBegin; 3224 PetscValidHeaderSpecific(fact, MAT_CLASSID, 1); 3225 PetscValidHeaderSpecific(mat, MAT_CLASSID, 2); 3226 PetscValidType(fact, 1); 3227 PetscValidType(mat, 2); 3228 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 3229 PetscCheck(mat->rmap->N == (fact)->rmap->N && mat->cmap->N == (fact)->cmap->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Mat fact: global dimensions are different %" PetscInt_FMT " should = %" PetscInt_FMT " %" PetscInt_FMT " should = %" PetscInt_FMT, 3230 mat->rmap->N, (fact)->rmap->N, mat->cmap->N, (fact)->cmap->N); 3231 3232 MatCheckPreallocated(mat, 2); 3233 if (!info) { 3234 PetscCall(MatFactorInfoInitialize(&tinfo)); 3235 info = &tinfo; 3236 } 3237 3238 if (!fact->trivialsymbolic) PetscCall(PetscLogEventBegin(MAT_LUFactorNumeric, mat, fact, 0, 0)); 3239 else PetscCall(PetscLogEventBegin(MAT_LUFactor, mat, fact, 0, 0)); 3240 PetscUseTypeMethod(fact, lufactornumeric, mat, info); 3241 if (!fact->trivialsymbolic) PetscCall(PetscLogEventEnd(MAT_LUFactorNumeric, mat, fact, 0, 0)); 3242 else PetscCall(PetscLogEventEnd(MAT_LUFactor, mat, fact, 0, 0)); 3243 PetscCall(MatViewFromOptions(fact, NULL, "-mat_factor_view")); 3244 PetscCall(PetscObjectStateIncrease((PetscObject)fact)); 3245 PetscFunctionReturn(PETSC_SUCCESS); 3246 } 3247 3248 /*@C 3249 MatCholeskyFactor - Performs in-place Cholesky factorization of a 3250 symmetric matrix. 3251 3252 Collective 3253 3254 Input Parameters: 3255 + mat - the matrix 3256 . perm - row and column permutations 3257 - info - expected fill as ratio of original fill 3258 3259 Level: developer 3260 3261 Notes: 3262 See `MatLUFactor()` for the nonsymmetric case. See also `MatGetFactor()`, 3263 `MatCholeskyFactorSymbolic()`, and `MatCholeskyFactorNumeric()`. 3264 3265 Most users should employ the `KSP` interface for linear solvers 3266 instead of working directly with matrix algebra routines such as this. 3267 See, e.g., `KSPCreate()`. 3268 3269 Developer Note: 3270 The Fortran interface is not autogenerated as the 3271 interface definition cannot be generated correctly [due to `MatFactorInfo`] 3272 3273 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatFactorInfo`, `MatLUFactor()`, `MatCholeskyFactorSymbolic()`, `MatCholeskyFactorNumeric()` 3274 `MatGetOrdering()` 3275 @*/ 3276 PetscErrorCode MatCholeskyFactor(Mat mat, IS perm, const MatFactorInfo *info) 3277 { 3278 MatFactorInfo tinfo; 3279 3280 PetscFunctionBegin; 3281 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 3282 if (perm) PetscValidHeaderSpecific(perm, IS_CLASSID, 2); 3283 if (info) PetscAssertPointer(info, 3); 3284 PetscValidType(mat, 1); 3285 PetscCheck(mat->rmap->N == mat->cmap->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONG, "Matrix must be square"); 3286 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 3287 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 3288 MatCheckPreallocated(mat, 1); 3289 if (!info) { 3290 PetscCall(MatFactorInfoInitialize(&tinfo)); 3291 info = &tinfo; 3292 } 3293 3294 PetscCall(PetscLogEventBegin(MAT_CholeskyFactor, mat, perm, 0, 0)); 3295 PetscUseTypeMethod(mat, choleskyfactor, perm, info); 3296 PetscCall(PetscLogEventEnd(MAT_CholeskyFactor, mat, perm, 0, 0)); 3297 PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 3298 PetscFunctionReturn(PETSC_SUCCESS); 3299 } 3300 3301 /*@C 3302 MatCholeskyFactorSymbolic - Performs symbolic Cholesky factorization 3303 of a symmetric matrix. 3304 3305 Collective 3306 3307 Input Parameters: 3308 + fact - the factor matrix obtained with `MatGetFactor()` 3309 . mat - the matrix 3310 . perm - row and column permutations 3311 - info - options for factorization, includes 3312 .vb 3313 fill - expected fill as ratio of original fill. 3314 dtcol - pivot tolerance (0 no pivot, 1 full column pivoting) 3315 Run with the option -info to determine an optimal value to use 3316 .ve 3317 3318 Level: developer 3319 3320 Notes: 3321 See `MatLUFactorSymbolic()` for the nonsymmetric case. See also 3322 `MatCholeskyFactor()` and `MatCholeskyFactorNumeric()`. 3323 3324 Most users should employ the `KSP` interface for linear solvers 3325 instead of working directly with matrix algebra routines such as this. 3326 See, e.g., `KSPCreate()`. 3327 3328 Developer Note: 3329 The Fortran interface is not autogenerated as the 3330 interface definition cannot be generated correctly [due to `MatFactorInfo`] 3331 3332 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatFactorInfo`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatCholeskyFactor()`, `MatCholeskyFactorNumeric()` 3333 `MatGetOrdering()` 3334 @*/ 3335 PetscErrorCode MatCholeskyFactorSymbolic(Mat fact, Mat mat, IS perm, const MatFactorInfo *info) 3336 { 3337 MatFactorInfo tinfo; 3338 3339 PetscFunctionBegin; 3340 PetscValidHeaderSpecific(fact, MAT_CLASSID, 1); 3341 PetscValidHeaderSpecific(mat, MAT_CLASSID, 2); 3342 if (perm) PetscValidHeaderSpecific(perm, IS_CLASSID, 3); 3343 if (info) PetscAssertPointer(info, 4); 3344 PetscValidType(fact, 1); 3345 PetscValidType(mat, 2); 3346 PetscCheck(mat->rmap->N == mat->cmap->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONG, "Matrix must be square"); 3347 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 3348 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 3349 MatCheckPreallocated(mat, 2); 3350 if (!info) { 3351 PetscCall(MatFactorInfoInitialize(&tinfo)); 3352 info = &tinfo; 3353 } 3354 3355 if (!fact->trivialsymbolic) PetscCall(PetscLogEventBegin(MAT_CholeskyFactorSymbolic, mat, perm, 0, 0)); 3356 PetscUseTypeMethod(fact, choleskyfactorsymbolic, mat, perm, info); 3357 if (!fact->trivialsymbolic) PetscCall(PetscLogEventEnd(MAT_CholeskyFactorSymbolic, mat, perm, 0, 0)); 3358 PetscCall(PetscObjectStateIncrease((PetscObject)fact)); 3359 PetscFunctionReturn(PETSC_SUCCESS); 3360 } 3361 3362 /*@C 3363 MatCholeskyFactorNumeric - Performs numeric Cholesky factorization 3364 of a symmetric matrix. Call this routine after first calling `MatGetFactor()` and 3365 `MatCholeskyFactorSymbolic()`. 3366 3367 Collective 3368 3369 Input Parameters: 3370 + fact - the factor matrix obtained with `MatGetFactor()`, where the factored values are stored 3371 . mat - the initial matrix that is to be factored 3372 - info - options for factorization 3373 3374 Level: developer 3375 3376 Note: 3377 Most users should employ the `KSP` interface for linear solvers 3378 instead of working directly with matrix algebra routines such as this. 3379 See, e.g., `KSPCreate()`. 3380 3381 Developer Note: 3382 The Fortran interface is not autogenerated as the 3383 interface definition cannot be generated correctly [due to `MatFactorInfo`] 3384 3385 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatFactorInfo`, `MatGetFactor()`, `MatCholeskyFactorSymbolic()`, `MatCholeskyFactor()`, `MatLUFactorNumeric()` 3386 @*/ 3387 PetscErrorCode MatCholeskyFactorNumeric(Mat fact, Mat mat, const MatFactorInfo *info) 3388 { 3389 MatFactorInfo tinfo; 3390 3391 PetscFunctionBegin; 3392 PetscValidHeaderSpecific(fact, MAT_CLASSID, 1); 3393 PetscValidHeaderSpecific(mat, MAT_CLASSID, 2); 3394 PetscValidType(fact, 1); 3395 PetscValidType(mat, 2); 3396 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 3397 PetscCheck(mat->rmap->N == (fact)->rmap->N && mat->cmap->N == (fact)->cmap->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Mat fact: global dim %" PetscInt_FMT " should = %" PetscInt_FMT " %" PetscInt_FMT " should = %" PetscInt_FMT, 3398 mat->rmap->N, (fact)->rmap->N, mat->cmap->N, (fact)->cmap->N); 3399 MatCheckPreallocated(mat, 2); 3400 if (!info) { 3401 PetscCall(MatFactorInfoInitialize(&tinfo)); 3402 info = &tinfo; 3403 } 3404 3405 if (!fact->trivialsymbolic) PetscCall(PetscLogEventBegin(MAT_CholeskyFactorNumeric, mat, fact, 0, 0)); 3406 else PetscCall(PetscLogEventBegin(MAT_CholeskyFactor, mat, fact, 0, 0)); 3407 PetscUseTypeMethod(fact, choleskyfactornumeric, mat, info); 3408 if (!fact->trivialsymbolic) PetscCall(PetscLogEventEnd(MAT_CholeskyFactorNumeric, mat, fact, 0, 0)); 3409 else PetscCall(PetscLogEventEnd(MAT_CholeskyFactor, mat, fact, 0, 0)); 3410 PetscCall(MatViewFromOptions(fact, NULL, "-mat_factor_view")); 3411 PetscCall(PetscObjectStateIncrease((PetscObject)fact)); 3412 PetscFunctionReturn(PETSC_SUCCESS); 3413 } 3414 3415 /*@ 3416 MatQRFactor - Performs in-place QR factorization of matrix. 3417 3418 Collective 3419 3420 Input Parameters: 3421 + mat - the matrix 3422 . col - column permutation 3423 - info - options for factorization, includes 3424 .vb 3425 fill - expected fill as ratio of original fill. 3426 dtcol - pivot tolerance (0 no pivot, 1 full column pivoting) 3427 Run with the option -info to determine an optimal value to use 3428 .ve 3429 3430 Level: developer 3431 3432 Notes: 3433 Most users should employ the `KSP` interface for linear solvers 3434 instead of working directly with matrix algebra routines such as this. 3435 See, e.g., `KSPCreate()`. 3436 3437 This changes the state of the matrix to a factored matrix; it cannot be used 3438 for example with `MatSetValues()` unless one first calls `MatSetUnfactored()`. 3439 3440 Developer Note: 3441 The Fortran interface is not autogenerated as the 3442 interface definition cannot be generated correctly [due to MatFactorInfo] 3443 3444 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatFactorInfo`, `MatGetFactor()`, `MatQRFactorSymbolic()`, `MatQRFactorNumeric()`, `MatLUFactor()`, 3445 `MatSetUnfactored()` 3446 @*/ 3447 PetscErrorCode MatQRFactor(Mat mat, IS col, const MatFactorInfo *info) 3448 { 3449 PetscFunctionBegin; 3450 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 3451 if (col) PetscValidHeaderSpecific(col, IS_CLASSID, 2); 3452 if (info) PetscAssertPointer(info, 3); 3453 PetscValidType(mat, 1); 3454 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 3455 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 3456 MatCheckPreallocated(mat, 1); 3457 PetscCall(PetscLogEventBegin(MAT_QRFactor, mat, col, 0, 0)); 3458 PetscUseMethod(mat, "MatQRFactor_C", (Mat, IS, const MatFactorInfo *), (mat, col, info)); 3459 PetscCall(PetscLogEventEnd(MAT_QRFactor, mat, col, 0, 0)); 3460 PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 3461 PetscFunctionReturn(PETSC_SUCCESS); 3462 } 3463 3464 /*@ 3465 MatQRFactorSymbolic - Performs symbolic QR factorization of matrix. 3466 Call this routine after `MatGetFactor()` but before calling `MatQRFactorNumeric()`. 3467 3468 Collective 3469 3470 Input Parameters: 3471 + fact - the factor matrix obtained with `MatGetFactor()` 3472 . mat - the matrix 3473 . col - column permutation 3474 - info - options for factorization, includes 3475 .vb 3476 fill - expected fill as ratio of original fill. 3477 dtcol - pivot tolerance (0 no pivot, 1 full column pivoting) 3478 Run with the option -info to determine an optimal value to use 3479 .ve 3480 3481 Level: developer 3482 3483 Note: 3484 Most users should employ the `KSP` interface for linear solvers 3485 instead of working directly with matrix algebra routines such as this. 3486 See, e.g., `KSPCreate()`. 3487 3488 Developer Note: 3489 The Fortran interface is not autogenerated as the 3490 interface definition cannot be generated correctly [due to `MatFactorInfo`] 3491 3492 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatFactorInfo`, `MatQRFactor()`, `MatQRFactorNumeric()`, `MatLUFactor()`, `MatFactorInfoInitialize()` 3493 @*/ 3494 PetscErrorCode MatQRFactorSymbolic(Mat fact, Mat mat, IS col, const MatFactorInfo *info) 3495 { 3496 MatFactorInfo tinfo; 3497 3498 PetscFunctionBegin; 3499 PetscValidHeaderSpecific(fact, MAT_CLASSID, 1); 3500 PetscValidHeaderSpecific(mat, MAT_CLASSID, 2); 3501 if (col) PetscValidHeaderSpecific(col, IS_CLASSID, 3); 3502 if (info) PetscAssertPointer(info, 4); 3503 PetscValidType(fact, 1); 3504 PetscValidType(mat, 2); 3505 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 3506 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 3507 MatCheckPreallocated(mat, 2); 3508 if (!info) { 3509 PetscCall(MatFactorInfoInitialize(&tinfo)); 3510 info = &tinfo; 3511 } 3512 3513 if (!fact->trivialsymbolic) PetscCall(PetscLogEventBegin(MAT_QRFactorSymbolic, fact, mat, col, 0)); 3514 PetscUseMethod(fact, "MatQRFactorSymbolic_C", (Mat, Mat, IS, const MatFactorInfo *), (fact, mat, col, info)); 3515 if (!fact->trivialsymbolic) PetscCall(PetscLogEventEnd(MAT_QRFactorSymbolic, fact, mat, col, 0)); 3516 PetscCall(PetscObjectStateIncrease((PetscObject)fact)); 3517 PetscFunctionReturn(PETSC_SUCCESS); 3518 } 3519 3520 /*@ 3521 MatQRFactorNumeric - Performs numeric QR factorization of a matrix. 3522 Call this routine after first calling `MatGetFactor()`, and `MatQRFactorSymbolic()`. 3523 3524 Collective 3525 3526 Input Parameters: 3527 + fact - the factor matrix obtained with `MatGetFactor()` 3528 . mat - the matrix 3529 - info - options for factorization 3530 3531 Level: developer 3532 3533 Notes: 3534 See `MatQRFactor()` for in-place factorization. 3535 3536 Most users should employ the `KSP` interface for linear solvers 3537 instead of working directly with matrix algebra routines such as this. 3538 See, e.g., `KSPCreate()`. 3539 3540 Developer Note: 3541 The Fortran interface is not autogenerated as the 3542 interface definition cannot be generated correctly [due to `MatFactorInfo`] 3543 3544 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatFactorInfo`, `MatGetFactor()`, `MatQRFactor()`, `MatQRFactorSymbolic()`, `MatLUFactor()` 3545 @*/ 3546 PetscErrorCode MatQRFactorNumeric(Mat fact, Mat mat, const MatFactorInfo *info) 3547 { 3548 MatFactorInfo tinfo; 3549 3550 PetscFunctionBegin; 3551 PetscValidHeaderSpecific(fact, MAT_CLASSID, 1); 3552 PetscValidHeaderSpecific(mat, MAT_CLASSID, 2); 3553 PetscValidType(fact, 1); 3554 PetscValidType(mat, 2); 3555 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 3556 PetscCheck(mat->rmap->N == fact->rmap->N && mat->cmap->N == fact->cmap->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Mat fact: global dimensions are different %" PetscInt_FMT " should = %" PetscInt_FMT " %" PetscInt_FMT " should = %" PetscInt_FMT, 3557 mat->rmap->N, (fact)->rmap->N, mat->cmap->N, (fact)->cmap->N); 3558 3559 MatCheckPreallocated(mat, 2); 3560 if (!info) { 3561 PetscCall(MatFactorInfoInitialize(&tinfo)); 3562 info = &tinfo; 3563 } 3564 3565 if (!fact->trivialsymbolic) PetscCall(PetscLogEventBegin(MAT_QRFactorNumeric, mat, fact, 0, 0)); 3566 else PetscCall(PetscLogEventBegin(MAT_QRFactor, mat, fact, 0, 0)); 3567 PetscUseMethod(fact, "MatQRFactorNumeric_C", (Mat, Mat, const MatFactorInfo *), (fact, mat, info)); 3568 if (!fact->trivialsymbolic) PetscCall(PetscLogEventEnd(MAT_QRFactorNumeric, mat, fact, 0, 0)); 3569 else PetscCall(PetscLogEventEnd(MAT_QRFactor, mat, fact, 0, 0)); 3570 PetscCall(MatViewFromOptions(fact, NULL, "-mat_factor_view")); 3571 PetscCall(PetscObjectStateIncrease((PetscObject)fact)); 3572 PetscFunctionReturn(PETSC_SUCCESS); 3573 } 3574 3575 /*@ 3576 MatSolve - Solves $A x = b$, given a factored matrix. 3577 3578 Neighbor-wise Collective 3579 3580 Input Parameters: 3581 + mat - the factored matrix 3582 - b - the right-hand-side vector 3583 3584 Output Parameter: 3585 . x - the result vector 3586 3587 Level: developer 3588 3589 Notes: 3590 The vectors `b` and `x` cannot be the same. I.e., one cannot 3591 call `MatSolve`(A,x,x). 3592 3593 Most users should employ the `KSP` interface for linear solvers 3594 instead of working directly with matrix algebra routines such as this. 3595 See, e.g., `KSPCreate()`. 3596 3597 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatLUFactor()`, `MatSolveAdd()`, `MatSolveTranspose()`, `MatSolveTransposeAdd()` 3598 @*/ 3599 PetscErrorCode MatSolve(Mat mat, Vec b, Vec x) 3600 { 3601 PetscFunctionBegin; 3602 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 3603 PetscValidType(mat, 1); 3604 PetscValidHeaderSpecific(b, VEC_CLASSID, 2); 3605 PetscValidHeaderSpecific(x, VEC_CLASSID, 3); 3606 PetscCheckSameComm(mat, 1, b, 2); 3607 PetscCheckSameComm(mat, 1, x, 3); 3608 PetscCheck(x != b, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_IDN, "x and b must be different vectors"); 3609 PetscCheck(mat->cmap->N == x->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec x: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->cmap->N, x->map->N); 3610 PetscCheck(mat->rmap->N == b->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec b: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->N, b->map->N); 3611 PetscCheck(mat->rmap->n == b->map->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Mat mat,Vec b: local dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->n, b->map->n); 3612 if (!mat->rmap->N && !mat->cmap->N) PetscFunctionReturn(PETSC_SUCCESS); 3613 MatCheckPreallocated(mat, 1); 3614 3615 PetscCall(PetscLogEventBegin(MAT_Solve, mat, b, x, 0)); 3616 if (mat->factorerrortype) { 3617 PetscCall(PetscInfo(mat, "MatFactorError %d\n", mat->factorerrortype)); 3618 PetscCall(VecSetInf(x)); 3619 } else PetscUseTypeMethod(mat, solve, b, x); 3620 PetscCall(PetscLogEventEnd(MAT_Solve, mat, b, x, 0)); 3621 PetscCall(PetscObjectStateIncrease((PetscObject)x)); 3622 PetscFunctionReturn(PETSC_SUCCESS); 3623 } 3624 3625 static PetscErrorCode MatMatSolve_Basic(Mat A, Mat B, Mat X, PetscBool trans) 3626 { 3627 Vec b, x; 3628 PetscInt N, i; 3629 PetscErrorCode (*f)(Mat, Vec, Vec); 3630 PetscBool Abound, Bneedconv = PETSC_FALSE, Xneedconv = PETSC_FALSE; 3631 3632 PetscFunctionBegin; 3633 if (A->factorerrortype) { 3634 PetscCall(PetscInfo(A, "MatFactorError %d\n", A->factorerrortype)); 3635 PetscCall(MatSetInf(X)); 3636 PetscFunctionReturn(PETSC_SUCCESS); 3637 } 3638 f = (!trans || (!A->ops->solvetranspose && A->symmetric)) ? A->ops->solve : A->ops->solvetranspose; 3639 PetscCheck(f, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Mat type %s", ((PetscObject)A)->type_name); 3640 PetscCall(MatBoundToCPU(A, &Abound)); 3641 if (!Abound) { 3642 PetscCall(PetscObjectTypeCompareAny((PetscObject)B, &Bneedconv, MATSEQDENSE, MATMPIDENSE, "")); 3643 PetscCall(PetscObjectTypeCompareAny((PetscObject)X, &Xneedconv, MATSEQDENSE, MATMPIDENSE, "")); 3644 } 3645 #if PetscDefined(HAVE_CUDA) 3646 if (Bneedconv) PetscCall(MatConvert(B, MATDENSECUDA, MAT_INPLACE_MATRIX, &B)); 3647 if (Xneedconv) PetscCall(MatConvert(X, MATDENSECUDA, MAT_INPLACE_MATRIX, &X)); 3648 #elif PetscDefined(HAVE_HIP) 3649 if (Bneedconv) PetscCall(MatConvert(B, MATDENSEHIP, MAT_INPLACE_MATRIX, &B)); 3650 if (Xneedconv) PetscCall(MatConvert(X, MATDENSEHIP, MAT_INPLACE_MATRIX, &X)); 3651 #endif 3652 PetscCall(MatGetSize(B, NULL, &N)); 3653 for (i = 0; i < N; i++) { 3654 PetscCall(MatDenseGetColumnVecRead(B, i, &b)); 3655 PetscCall(MatDenseGetColumnVecWrite(X, i, &x)); 3656 PetscCall((*f)(A, b, x)); 3657 PetscCall(MatDenseRestoreColumnVecWrite(X, i, &x)); 3658 PetscCall(MatDenseRestoreColumnVecRead(B, i, &b)); 3659 } 3660 if (Bneedconv) PetscCall(MatConvert(B, MATDENSE, MAT_INPLACE_MATRIX, &B)); 3661 if (Xneedconv) PetscCall(MatConvert(X, MATDENSE, MAT_INPLACE_MATRIX, &X)); 3662 PetscFunctionReturn(PETSC_SUCCESS); 3663 } 3664 3665 /*@ 3666 MatMatSolve - Solves $A X = B$, given a factored matrix. 3667 3668 Neighbor-wise Collective 3669 3670 Input Parameters: 3671 + A - the factored matrix 3672 - B - the right-hand-side matrix `MATDENSE` (or sparse `MATAIJ`-- when using MUMPS) 3673 3674 Output Parameter: 3675 . X - the result matrix (dense matrix) 3676 3677 Level: developer 3678 3679 Note: 3680 If `B` is a `MATDENSE` matrix then one can call `MatMatSolve`(A,B,B) except with `MATSOLVERMKL_CPARDISO`; 3681 otherwise, `B` and `X` cannot be the same. 3682 3683 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatSolve()`, `MatMatSolveTranspose()`, `MatLUFactor()`, `MatCholeskyFactor()` 3684 @*/ 3685 PetscErrorCode MatMatSolve(Mat A, Mat B, Mat X) 3686 { 3687 PetscFunctionBegin; 3688 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 3689 PetscValidType(A, 1); 3690 PetscValidHeaderSpecific(B, MAT_CLASSID, 2); 3691 PetscValidHeaderSpecific(X, MAT_CLASSID, 3); 3692 PetscCheckSameComm(A, 1, B, 2); 3693 PetscCheckSameComm(A, 1, X, 3); 3694 PetscCheck(A->cmap->N == X->rmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_SIZ, "Mat A,Mat X: global dim %" PetscInt_FMT " %" PetscInt_FMT, A->cmap->N, X->rmap->N); 3695 PetscCheck(A->rmap->N == B->rmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_SIZ, "Mat A,Mat B: global dim %" PetscInt_FMT " %" PetscInt_FMT, A->rmap->N, B->rmap->N); 3696 PetscCheck(X->cmap->N == B->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_SIZ, "Solution matrix must have same number of columns as rhs matrix"); 3697 if (!A->rmap->N && !A->cmap->N) PetscFunctionReturn(PETSC_SUCCESS); 3698 MatCheckPreallocated(A, 1); 3699 3700 PetscCall(PetscLogEventBegin(MAT_MatSolve, A, B, X, 0)); 3701 if (!A->ops->matsolve) { 3702 PetscCall(PetscInfo(A, "Mat type %s using basic MatMatSolve\n", ((PetscObject)A)->type_name)); 3703 PetscCall(MatMatSolve_Basic(A, B, X, PETSC_FALSE)); 3704 } else PetscUseTypeMethod(A, matsolve, B, X); 3705 PetscCall(PetscLogEventEnd(MAT_MatSolve, A, B, X, 0)); 3706 PetscCall(PetscObjectStateIncrease((PetscObject)X)); 3707 PetscFunctionReturn(PETSC_SUCCESS); 3708 } 3709 3710 /*@ 3711 MatMatSolveTranspose - Solves $A^T X = B $, given a factored matrix. 3712 3713 Neighbor-wise Collective 3714 3715 Input Parameters: 3716 + A - the factored matrix 3717 - B - the right-hand-side matrix (`MATDENSE` matrix) 3718 3719 Output Parameter: 3720 . X - the result matrix (dense matrix) 3721 3722 Level: developer 3723 3724 Note: 3725 The matrices `B` and `X` cannot be the same. I.e., one cannot 3726 call `MatMatSolveTranspose`(A,X,X). 3727 3728 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatSolveTranspose()`, `MatMatSolve()`, `MatLUFactor()`, `MatCholeskyFactor()` 3729 @*/ 3730 PetscErrorCode MatMatSolveTranspose(Mat A, Mat B, Mat X) 3731 { 3732 PetscFunctionBegin; 3733 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 3734 PetscValidType(A, 1); 3735 PetscValidHeaderSpecific(B, MAT_CLASSID, 2); 3736 PetscValidHeaderSpecific(X, MAT_CLASSID, 3); 3737 PetscCheckSameComm(A, 1, B, 2); 3738 PetscCheckSameComm(A, 1, X, 3); 3739 PetscCheck(X != B, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_IDN, "X and B must be different matrices"); 3740 PetscCheck(A->cmap->N == X->rmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_SIZ, "Mat A,Mat X: global dim %" PetscInt_FMT " %" PetscInt_FMT, A->cmap->N, X->rmap->N); 3741 PetscCheck(A->rmap->N == B->rmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_SIZ, "Mat A,Mat B: global dim %" PetscInt_FMT " %" PetscInt_FMT, A->rmap->N, B->rmap->N); 3742 PetscCheck(A->rmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Mat A,Mat B: local dim %" PetscInt_FMT " %" PetscInt_FMT, A->rmap->n, B->rmap->n); 3743 PetscCheck(X->cmap->N >= B->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Solution matrix must have same number of columns as rhs matrix"); 3744 if (!A->rmap->N && !A->cmap->N) PetscFunctionReturn(PETSC_SUCCESS); 3745 MatCheckPreallocated(A, 1); 3746 3747 PetscCall(PetscLogEventBegin(MAT_MatSolve, A, B, X, 0)); 3748 if (!A->ops->matsolvetranspose) { 3749 PetscCall(PetscInfo(A, "Mat type %s using basic MatMatSolveTranspose\n", ((PetscObject)A)->type_name)); 3750 PetscCall(MatMatSolve_Basic(A, B, X, PETSC_TRUE)); 3751 } else PetscUseTypeMethod(A, matsolvetranspose, B, X); 3752 PetscCall(PetscLogEventEnd(MAT_MatSolve, A, B, X, 0)); 3753 PetscCall(PetscObjectStateIncrease((PetscObject)X)); 3754 PetscFunctionReturn(PETSC_SUCCESS); 3755 } 3756 3757 /*@ 3758 MatMatTransposeSolve - Solves $A X = B^T$, given a factored matrix. 3759 3760 Neighbor-wise Collective 3761 3762 Input Parameters: 3763 + A - the factored matrix 3764 - Bt - the transpose of right-hand-side matrix as a `MATDENSE` 3765 3766 Output Parameter: 3767 . X - the result matrix (dense matrix) 3768 3769 Level: developer 3770 3771 Note: 3772 For MUMPS, it only supports centralized sparse compressed column format on the host processor for right hand side matrix. User must create `Bt` in sparse compressed row 3773 format on the host processor and call `MatMatTransposeSolve()` to implement MUMPS' `MatMatSolve()`. 3774 3775 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatMatSolve()`, `MatMatSolveTranspose()`, `MatLUFactor()`, `MatCholeskyFactor()` 3776 @*/ 3777 PetscErrorCode MatMatTransposeSolve(Mat A, Mat Bt, Mat X) 3778 { 3779 PetscFunctionBegin; 3780 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 3781 PetscValidType(A, 1); 3782 PetscValidHeaderSpecific(Bt, MAT_CLASSID, 2); 3783 PetscValidHeaderSpecific(X, MAT_CLASSID, 3); 3784 PetscCheckSameComm(A, 1, Bt, 2); 3785 PetscCheckSameComm(A, 1, X, 3); 3786 3787 PetscCheck(X != Bt, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_IDN, "X and B must be different matrices"); 3788 PetscCheck(A->cmap->N == X->rmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_SIZ, "Mat A,Mat X: global dim %" PetscInt_FMT " %" PetscInt_FMT, A->cmap->N, X->rmap->N); 3789 PetscCheck(A->rmap->N == Bt->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_SIZ, "Mat A,Mat Bt: global dim %" PetscInt_FMT " %" PetscInt_FMT, A->rmap->N, Bt->cmap->N); 3790 PetscCheck(X->cmap->N >= Bt->rmap->N, PetscObjectComm((PetscObject)X), PETSC_ERR_ARG_SIZ, "Solution matrix must have same number of columns as row number of the rhs matrix"); 3791 if (!A->rmap->N && !A->cmap->N) PetscFunctionReturn(PETSC_SUCCESS); 3792 PetscCheck(A->factortype, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONGSTATE, "Unfactored matrix"); 3793 MatCheckPreallocated(A, 1); 3794 3795 PetscCall(PetscLogEventBegin(MAT_MatTrSolve, A, Bt, X, 0)); 3796 PetscUseTypeMethod(A, mattransposesolve, Bt, X); 3797 PetscCall(PetscLogEventEnd(MAT_MatTrSolve, A, Bt, X, 0)); 3798 PetscCall(PetscObjectStateIncrease((PetscObject)X)); 3799 PetscFunctionReturn(PETSC_SUCCESS); 3800 } 3801 3802 /*@ 3803 MatForwardSolve - Solves $ L x = b $, given a factored matrix, $A = LU $, or 3804 $U^T*D^(1/2) x = b$, given a factored symmetric matrix, $A = U^T*D*U$, 3805 3806 Neighbor-wise Collective 3807 3808 Input Parameters: 3809 + mat - the factored matrix 3810 - b - the right-hand-side vector 3811 3812 Output Parameter: 3813 . x - the result vector 3814 3815 Level: developer 3816 3817 Notes: 3818 `MatSolve()` should be used for most applications, as it performs 3819 a forward solve followed by a backward solve. 3820 3821 The vectors `b` and `x` cannot be the same, i.e., one cannot 3822 call `MatForwardSolve`(A,x,x). 3823 3824 For matrix in `MATSEQBAIJ` format with block size larger than 1, 3825 the diagonal blocks are not implemented as $D = D^(1/2) * D^(1/2)$ yet. 3826 `MatForwardSolve()` solves $U^T*D y = b$, and 3827 `MatBackwardSolve()` solves $U x = y$. 3828 Thus they do not provide a symmetric preconditioner. 3829 3830 .seealso: [](ch_matrices), `Mat`, `MatBackwardSolve()`, `MatGetFactor()`, `MatSolve()` 3831 @*/ 3832 PetscErrorCode MatForwardSolve(Mat mat, Vec b, Vec x) 3833 { 3834 PetscFunctionBegin; 3835 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 3836 PetscValidType(mat, 1); 3837 PetscValidHeaderSpecific(b, VEC_CLASSID, 2); 3838 PetscValidHeaderSpecific(x, VEC_CLASSID, 3); 3839 PetscCheckSameComm(mat, 1, b, 2); 3840 PetscCheckSameComm(mat, 1, x, 3); 3841 PetscCheck(x != b, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_IDN, "x and b must be different vectors"); 3842 PetscCheck(mat->cmap->N == x->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec x: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->cmap->N, x->map->N); 3843 PetscCheck(mat->rmap->N == b->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec b: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->N, b->map->N); 3844 PetscCheck(mat->rmap->n == b->map->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Mat mat,Vec b: local dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->n, b->map->n); 3845 if (!mat->rmap->N && !mat->cmap->N) PetscFunctionReturn(PETSC_SUCCESS); 3846 MatCheckPreallocated(mat, 1); 3847 3848 PetscCall(PetscLogEventBegin(MAT_ForwardSolve, mat, b, x, 0)); 3849 PetscUseTypeMethod(mat, forwardsolve, b, x); 3850 PetscCall(PetscLogEventEnd(MAT_ForwardSolve, mat, b, x, 0)); 3851 PetscCall(PetscObjectStateIncrease((PetscObject)x)); 3852 PetscFunctionReturn(PETSC_SUCCESS); 3853 } 3854 3855 /*@ 3856 MatBackwardSolve - Solves $U x = b$, given a factored matrix, $A = LU$. 3857 $D^(1/2) U x = b$, given a factored symmetric matrix, $A = U^T*D*U$, 3858 3859 Neighbor-wise Collective 3860 3861 Input Parameters: 3862 + mat - the factored matrix 3863 - b - the right-hand-side vector 3864 3865 Output Parameter: 3866 . x - the result vector 3867 3868 Level: developer 3869 3870 Notes: 3871 `MatSolve()` should be used for most applications, as it performs 3872 a forward solve followed by a backward solve. 3873 3874 The vectors `b` and `x` cannot be the same. I.e., one cannot 3875 call `MatBackwardSolve`(A,x,x). 3876 3877 For matrix in `MATSEQBAIJ` format with block size larger than 1, 3878 the diagonal blocks are not implemented as $D = D^(1/2) * D^(1/2)$ yet. 3879 `MatForwardSolve()` solves $U^T*D y = b$, and 3880 `MatBackwardSolve()` solves $U x = y$. 3881 Thus they do not provide a symmetric preconditioner. 3882 3883 .seealso: [](ch_matrices), `Mat`, `MatForwardSolve()`, `MatGetFactor()`, `MatSolve()` 3884 @*/ 3885 PetscErrorCode MatBackwardSolve(Mat mat, Vec b, Vec x) 3886 { 3887 PetscFunctionBegin; 3888 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 3889 PetscValidType(mat, 1); 3890 PetscValidHeaderSpecific(b, VEC_CLASSID, 2); 3891 PetscValidHeaderSpecific(x, VEC_CLASSID, 3); 3892 PetscCheckSameComm(mat, 1, b, 2); 3893 PetscCheckSameComm(mat, 1, x, 3); 3894 PetscCheck(x != b, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_IDN, "x and b must be different vectors"); 3895 PetscCheck(mat->cmap->N == x->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec x: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->cmap->N, x->map->N); 3896 PetscCheck(mat->rmap->N == b->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec b: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->N, b->map->N); 3897 PetscCheck(mat->rmap->n == b->map->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Mat mat,Vec b: local dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->n, b->map->n); 3898 if (!mat->rmap->N && !mat->cmap->N) PetscFunctionReturn(PETSC_SUCCESS); 3899 MatCheckPreallocated(mat, 1); 3900 3901 PetscCall(PetscLogEventBegin(MAT_BackwardSolve, mat, b, x, 0)); 3902 PetscUseTypeMethod(mat, backwardsolve, b, x); 3903 PetscCall(PetscLogEventEnd(MAT_BackwardSolve, mat, b, x, 0)); 3904 PetscCall(PetscObjectStateIncrease((PetscObject)x)); 3905 PetscFunctionReturn(PETSC_SUCCESS); 3906 } 3907 3908 /*@ 3909 MatSolveAdd - Computes $x = y + A^{-1}*b$, given a factored matrix. 3910 3911 Neighbor-wise Collective 3912 3913 Input Parameters: 3914 + mat - the factored matrix 3915 . b - the right-hand-side vector 3916 - y - the vector to be added to 3917 3918 Output Parameter: 3919 . x - the result vector 3920 3921 Level: developer 3922 3923 Note: 3924 The vectors `b` and `x` cannot be the same. I.e., one cannot 3925 call `MatSolveAdd`(A,x,y,x). 3926 3927 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatSolve()`, `MatGetFactor()`, `MatSolveTranspose()`, `MatSolveTransposeAdd()` 3928 @*/ 3929 PetscErrorCode MatSolveAdd(Mat mat, Vec b, Vec y, Vec x) 3930 { 3931 PetscScalar one = 1.0; 3932 Vec tmp; 3933 3934 PetscFunctionBegin; 3935 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 3936 PetscValidType(mat, 1); 3937 PetscValidHeaderSpecific(y, VEC_CLASSID, 3); 3938 PetscValidHeaderSpecific(b, VEC_CLASSID, 2); 3939 PetscValidHeaderSpecific(x, VEC_CLASSID, 4); 3940 PetscCheckSameComm(mat, 1, b, 2); 3941 PetscCheckSameComm(mat, 1, y, 3); 3942 PetscCheckSameComm(mat, 1, x, 4); 3943 PetscCheck(x != b, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_IDN, "x and b must be different vectors"); 3944 PetscCheck(mat->cmap->N == x->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec x: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->cmap->N, x->map->N); 3945 PetscCheck(mat->rmap->N == b->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec b: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->N, b->map->N); 3946 PetscCheck(mat->rmap->N == y->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec y: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->N, y->map->N); 3947 PetscCheck(mat->rmap->n == b->map->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Mat mat,Vec b: local dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->n, b->map->n); 3948 PetscCheck(x->map->n == y->map->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Vec x,Vec y: local dim %" PetscInt_FMT " %" PetscInt_FMT, x->map->n, y->map->n); 3949 if (!mat->rmap->N && !mat->cmap->N) PetscFunctionReturn(PETSC_SUCCESS); 3950 MatCheckPreallocated(mat, 1); 3951 3952 PetscCall(PetscLogEventBegin(MAT_SolveAdd, mat, b, x, y)); 3953 if (mat->factorerrortype) { 3954 PetscCall(PetscInfo(mat, "MatFactorError %d\n", mat->factorerrortype)); 3955 PetscCall(VecSetInf(x)); 3956 } else if (mat->ops->solveadd) { 3957 PetscUseTypeMethod(mat, solveadd, b, y, x); 3958 } else { 3959 /* do the solve then the add manually */ 3960 if (x != y) { 3961 PetscCall(MatSolve(mat, b, x)); 3962 PetscCall(VecAXPY(x, one, y)); 3963 } else { 3964 PetscCall(VecDuplicate(x, &tmp)); 3965 PetscCall(VecCopy(x, tmp)); 3966 PetscCall(MatSolve(mat, b, x)); 3967 PetscCall(VecAXPY(x, one, tmp)); 3968 PetscCall(VecDestroy(&tmp)); 3969 } 3970 } 3971 PetscCall(PetscLogEventEnd(MAT_SolveAdd, mat, b, x, y)); 3972 PetscCall(PetscObjectStateIncrease((PetscObject)x)); 3973 PetscFunctionReturn(PETSC_SUCCESS); 3974 } 3975 3976 /*@ 3977 MatSolveTranspose - Solves $A^T x = b$, given a factored matrix. 3978 3979 Neighbor-wise Collective 3980 3981 Input Parameters: 3982 + mat - the factored matrix 3983 - b - the right-hand-side vector 3984 3985 Output Parameter: 3986 . x - the result vector 3987 3988 Level: developer 3989 3990 Notes: 3991 The vectors `b` and `x` cannot be the same. I.e., one cannot 3992 call `MatSolveTranspose`(A,x,x). 3993 3994 Most users should employ the `KSP` interface for linear solvers 3995 instead of working directly with matrix algebra routines such as this. 3996 See, e.g., `KSPCreate()`. 3997 3998 .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `KSP`, `MatSolve()`, `MatSolveAdd()`, `MatSolveTransposeAdd()` 3999 @*/ 4000 PetscErrorCode MatSolveTranspose(Mat mat, Vec b, Vec x) 4001 { 4002 PetscErrorCode (*f)(Mat, Vec, Vec) = (!mat->ops->solvetranspose && mat->symmetric) ? mat->ops->solve : mat->ops->solvetranspose; 4003 4004 PetscFunctionBegin; 4005 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 4006 PetscValidType(mat, 1); 4007 PetscValidHeaderSpecific(b, VEC_CLASSID, 2); 4008 PetscValidHeaderSpecific(x, VEC_CLASSID, 3); 4009 PetscCheckSameComm(mat, 1, b, 2); 4010 PetscCheckSameComm(mat, 1, x, 3); 4011 PetscCheck(x != b, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_IDN, "x and b must be different vectors"); 4012 PetscCheck(mat->rmap->N == x->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec x: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->N, x->map->N); 4013 PetscCheck(mat->cmap->N == b->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec b: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->cmap->N, b->map->N); 4014 if (!mat->rmap->N && !mat->cmap->N) PetscFunctionReturn(PETSC_SUCCESS); 4015 MatCheckPreallocated(mat, 1); 4016 PetscCall(PetscLogEventBegin(MAT_SolveTranspose, mat, b, x, 0)); 4017 if (mat->factorerrortype) { 4018 PetscCall(PetscInfo(mat, "MatFactorError %d\n", mat->factorerrortype)); 4019 PetscCall(VecSetInf(x)); 4020 } else { 4021 PetscCheck(f, PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "Matrix type %s", ((PetscObject)mat)->type_name); 4022 PetscCall((*f)(mat, b, x)); 4023 } 4024 PetscCall(PetscLogEventEnd(MAT_SolveTranspose, mat, b, x, 0)); 4025 PetscCall(PetscObjectStateIncrease((PetscObject)x)); 4026 PetscFunctionReturn(PETSC_SUCCESS); 4027 } 4028 4029 /*@ 4030 MatSolveTransposeAdd - Computes $x = y + A^{-T} b$ 4031 factored matrix. 4032 4033 Neighbor-wise Collective 4034 4035 Input Parameters: 4036 + mat - the factored matrix 4037 . b - the right-hand-side vector 4038 - y - the vector to be added to 4039 4040 Output Parameter: 4041 . x - the result vector 4042 4043 Level: developer 4044 4045 Note: 4046 The vectors `b` and `x` cannot be the same. I.e., one cannot 4047 call `MatSolveTransposeAdd`(A,x,y,x). 4048 4049 .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatSolve()`, `MatSolveAdd()`, `MatSolveTranspose()` 4050 @*/ 4051 PetscErrorCode MatSolveTransposeAdd(Mat mat, Vec b, Vec y, Vec x) 4052 { 4053 PetscScalar one = 1.0; 4054 Vec tmp; 4055 PetscErrorCode (*f)(Mat, Vec, Vec, Vec) = (!mat->ops->solvetransposeadd && mat->symmetric) ? mat->ops->solveadd : mat->ops->solvetransposeadd; 4056 4057 PetscFunctionBegin; 4058 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 4059 PetscValidType(mat, 1); 4060 PetscValidHeaderSpecific(y, VEC_CLASSID, 3); 4061 PetscValidHeaderSpecific(b, VEC_CLASSID, 2); 4062 PetscValidHeaderSpecific(x, VEC_CLASSID, 4); 4063 PetscCheckSameComm(mat, 1, b, 2); 4064 PetscCheckSameComm(mat, 1, y, 3); 4065 PetscCheckSameComm(mat, 1, x, 4); 4066 PetscCheck(x != b, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_IDN, "x and b must be different vectors"); 4067 PetscCheck(mat->rmap->N == x->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec x: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->N, x->map->N); 4068 PetscCheck(mat->cmap->N == b->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec b: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->cmap->N, b->map->N); 4069 PetscCheck(mat->cmap->N == y->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec y: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->cmap->N, y->map->N); 4070 PetscCheck(x->map->n == y->map->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Vec x,Vec y: local dim %" PetscInt_FMT " %" PetscInt_FMT, x->map->n, y->map->n); 4071 if (!mat->rmap->N && !mat->cmap->N) PetscFunctionReturn(PETSC_SUCCESS); 4072 MatCheckPreallocated(mat, 1); 4073 4074 PetscCall(PetscLogEventBegin(MAT_SolveTransposeAdd, mat, b, x, y)); 4075 if (mat->factorerrortype) { 4076 PetscCall(PetscInfo(mat, "MatFactorError %d\n", mat->factorerrortype)); 4077 PetscCall(VecSetInf(x)); 4078 } else if (f) { 4079 PetscCall((*f)(mat, b, y, x)); 4080 } else { 4081 /* do the solve then the add manually */ 4082 if (x != y) { 4083 PetscCall(MatSolveTranspose(mat, b, x)); 4084 PetscCall(VecAXPY(x, one, y)); 4085 } else { 4086 PetscCall(VecDuplicate(x, &tmp)); 4087 PetscCall(VecCopy(x, tmp)); 4088 PetscCall(MatSolveTranspose(mat, b, x)); 4089 PetscCall(VecAXPY(x, one, tmp)); 4090 PetscCall(VecDestroy(&tmp)); 4091 } 4092 } 4093 PetscCall(PetscLogEventEnd(MAT_SolveTransposeAdd, mat, b, x, y)); 4094 PetscCall(PetscObjectStateIncrease((PetscObject)x)); 4095 PetscFunctionReturn(PETSC_SUCCESS); 4096 } 4097 4098 // PetscClangLinter pragma disable: -fdoc-section-header-unknown 4099 /*@ 4100 MatSOR - Computes relaxation (SOR, Gauss-Seidel) sweeps. 4101 4102 Neighbor-wise Collective 4103 4104 Input Parameters: 4105 + mat - the matrix 4106 . b - the right hand side 4107 . omega - the relaxation factor 4108 . flag - flag indicating the type of SOR (see below) 4109 . shift - diagonal shift 4110 . its - the number of iterations 4111 - lits - the number of local iterations 4112 4113 Output Parameter: 4114 . x - the solution (can contain an initial guess, use option `SOR_ZERO_INITIAL_GUESS` to indicate no guess) 4115 4116 SOR Flags: 4117 + `SOR_FORWARD_SWEEP` - forward SOR 4118 . `SOR_BACKWARD_SWEEP` - backward SOR 4119 . `SOR_SYMMETRIC_SWEEP` - SSOR (symmetric SOR) 4120 . `SOR_LOCAL_FORWARD_SWEEP` - local forward SOR 4121 . `SOR_LOCAL_BACKWARD_SWEEP` - local forward SOR 4122 . `SOR_LOCAL_SYMMETRIC_SWEEP` - local SSOR 4123 . `SOR_EISENSTAT` - SOR with Eisenstat trick 4124 . `SOR_APPLY_UPPER`, `SOR_APPLY_LOWER` - applies 4125 upper/lower triangular part of matrix to 4126 vector (with omega) 4127 - `SOR_ZERO_INITIAL_GUESS` - zero initial guess 4128 4129 Level: developer 4130 4131 Notes: 4132 `SOR_LOCAL_FORWARD_SWEEP`, `SOR_LOCAL_BACKWARD_SWEEP`, and 4133 `SOR_LOCAL_SYMMETRIC_SWEEP` perform separate independent smoothings 4134 on each processor. 4135 4136 Application programmers will not generally use `MatSOR()` directly, 4137 but instead will employ the `KSP`/`PC` interface. 4138 4139 For `MATBAIJ`, `MATSBAIJ`, and `MATAIJ` matrices with Inodes this does a block SOR smoothing, otherwise it does a pointwise smoothing 4140 4141 Most users should employ the `KSP` interface for linear solvers 4142 instead of working directly with matrix algebra routines such as this. 4143 See, e.g., `KSPCreate()`. 4144 4145 Vectors `x` and `b` CANNOT be the same 4146 4147 The flags are implemented as bitwise inclusive or operations. 4148 For example, use (`SOR_ZERO_INITIAL_GUESS` | `SOR_SYMMETRIC_SWEEP`) 4149 to specify a zero initial guess for SSOR. 4150 4151 Developer Note: 4152 We should add block SOR support for `MATAIJ` matrices with block size set to great than one and no inodes 4153 4154 .seealso: [](ch_matrices), `Mat`, `MatMult()`, `KSP`, `PC`, `MatGetFactor()` 4155 @*/ 4156 PetscErrorCode MatSOR(Mat mat, Vec b, PetscReal omega, MatSORType flag, PetscReal shift, PetscInt its, PetscInt lits, Vec x) 4157 { 4158 PetscFunctionBegin; 4159 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 4160 PetscValidType(mat, 1); 4161 PetscValidHeaderSpecific(b, VEC_CLASSID, 2); 4162 PetscValidHeaderSpecific(x, VEC_CLASSID, 8); 4163 PetscCheckSameComm(mat, 1, b, 2); 4164 PetscCheckSameComm(mat, 1, x, 8); 4165 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 4166 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 4167 PetscCheck(mat->cmap->N == x->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec x: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->cmap->N, x->map->N); 4168 PetscCheck(mat->rmap->N == b->map->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_SIZ, "Mat mat,Vec b: global dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->N, b->map->N); 4169 PetscCheck(mat->rmap->n == b->map->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Mat mat,Vec b: local dim %" PetscInt_FMT " %" PetscInt_FMT, mat->rmap->n, b->map->n); 4170 PetscCheck(its > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Relaxation requires global its %" PetscInt_FMT " positive", its); 4171 PetscCheck(lits > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Relaxation requires local its %" PetscInt_FMT " positive", lits); 4172 PetscCheck(b != x, PETSC_COMM_SELF, PETSC_ERR_ARG_IDN, "b and x vector cannot be the same"); 4173 4174 MatCheckPreallocated(mat, 1); 4175 PetscCall(PetscLogEventBegin(MAT_SOR, mat, b, x, 0)); 4176 PetscUseTypeMethod(mat, sor, b, omega, flag, shift, its, lits, x); 4177 PetscCall(PetscLogEventEnd(MAT_SOR, mat, b, x, 0)); 4178 PetscCall(PetscObjectStateIncrease((PetscObject)x)); 4179 PetscFunctionReturn(PETSC_SUCCESS); 4180 } 4181 4182 /* 4183 Default matrix copy routine. 4184 */ 4185 PetscErrorCode MatCopy_Basic(Mat A, Mat B, MatStructure str) 4186 { 4187 PetscInt i, rstart = 0, rend = 0, nz; 4188 const PetscInt *cwork; 4189 const PetscScalar *vwork; 4190 4191 PetscFunctionBegin; 4192 if (B->assembled) PetscCall(MatZeroEntries(B)); 4193 if (str == SAME_NONZERO_PATTERN) { 4194 PetscCall(MatGetOwnershipRange(A, &rstart, &rend)); 4195 for (i = rstart; i < rend; i++) { 4196 PetscCall(MatGetRow(A, i, &nz, &cwork, &vwork)); 4197 PetscCall(MatSetValues(B, 1, &i, nz, cwork, vwork, INSERT_VALUES)); 4198 PetscCall(MatRestoreRow(A, i, &nz, &cwork, &vwork)); 4199 } 4200 } else { 4201 PetscCall(MatAYPX(B, 0.0, A, str)); 4202 } 4203 PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 4204 PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 4205 PetscFunctionReturn(PETSC_SUCCESS); 4206 } 4207 4208 /*@ 4209 MatCopy - Copies a matrix to another matrix. 4210 4211 Collective 4212 4213 Input Parameters: 4214 + A - the matrix 4215 - str - `SAME_NONZERO_PATTERN` or `DIFFERENT_NONZERO_PATTERN` 4216 4217 Output Parameter: 4218 . B - where the copy is put 4219 4220 Level: intermediate 4221 4222 Notes: 4223 If you use `SAME_NONZERO_PATTERN` then the two matrices must have the same nonzero pattern or the routine will crash. 4224 4225 `MatCopy()` copies the matrix entries of a matrix to another existing 4226 matrix (after first zeroing the second matrix). A related routine is 4227 `MatConvert()`, which first creates a new matrix and then copies the data. 4228 4229 .seealso: [](ch_matrices), `Mat`, `MatConvert()`, `MatDuplicate()` 4230 @*/ 4231 PetscErrorCode MatCopy(Mat A, Mat B, MatStructure str) 4232 { 4233 PetscInt i; 4234 4235 PetscFunctionBegin; 4236 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 4237 PetscValidHeaderSpecific(B, MAT_CLASSID, 2); 4238 PetscValidType(A, 1); 4239 PetscValidType(B, 2); 4240 PetscCheckSameComm(A, 1, B, 2); 4241 MatCheckPreallocated(B, 2); 4242 PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 4243 PetscCheck(!A->factortype, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 4244 PetscCheck(A->rmap->N == B->rmap->N && A->cmap->N == B->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_SIZ, "Mat A,Mat B: global dim (%" PetscInt_FMT ",%" PetscInt_FMT ") (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->N, B->rmap->N, 4245 A->cmap->N, B->cmap->N); 4246 MatCheckPreallocated(A, 1); 4247 if (A == B) PetscFunctionReturn(PETSC_SUCCESS); 4248 4249 PetscCall(PetscLogEventBegin(MAT_Copy, A, B, 0, 0)); 4250 if (A->ops->copy) PetscUseTypeMethod(A, copy, B, str); 4251 else PetscCall(MatCopy_Basic(A, B, str)); 4252 4253 B->stencil.dim = A->stencil.dim; 4254 B->stencil.noc = A->stencil.noc; 4255 for (i = 0; i <= A->stencil.dim + (A->stencil.noc ? 0 : -1); i++) { 4256 B->stencil.dims[i] = A->stencil.dims[i]; 4257 B->stencil.starts[i] = A->stencil.starts[i]; 4258 } 4259 4260 PetscCall(PetscLogEventEnd(MAT_Copy, A, B, 0, 0)); 4261 PetscCall(PetscObjectStateIncrease((PetscObject)B)); 4262 PetscFunctionReturn(PETSC_SUCCESS); 4263 } 4264 4265 /*@C 4266 MatConvert - Converts a matrix to another matrix, either of the same 4267 or different type. 4268 4269 Collective 4270 4271 Input Parameters: 4272 + mat - the matrix 4273 . newtype - new matrix type. Use `MATSAME` to create a new matrix of the 4274 same type as the original matrix. 4275 - reuse - denotes if the destination matrix is to be created or reused. 4276 Use `MAT_INPLACE_MATRIX` for inplace conversion (that is when you want the input mat to be changed to contain the matrix in the new format), otherwise use 4277 `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` (can only be used after the first call was made with `MAT_INITIAL_MATRIX`, causes the matrix space in M to be reused). 4278 4279 Output Parameter: 4280 . M - pointer to place new matrix 4281 4282 Level: intermediate 4283 4284 Notes: 4285 `MatConvert()` first creates a new matrix and then copies the data from 4286 the first matrix. A related routine is `MatCopy()`, which copies the matrix 4287 entries of one matrix to another already existing matrix context. 4288 4289 Cannot be used to convert a sequential matrix to parallel or parallel to sequential, 4290 the MPI communicator of the generated matrix is always the same as the communicator 4291 of the input matrix. 4292 4293 .seealso: [](ch_matrices), `Mat`, `MatCopy()`, `MatDuplicate()`, `MAT_INITIAL_MATRIX`, `MAT_REUSE_MATRIX`, `MAT_INPLACE_MATRIX` 4294 @*/ 4295 PetscErrorCode MatConvert(Mat mat, MatType newtype, MatReuse reuse, Mat *M) 4296 { 4297 PetscBool sametype, issame, flg; 4298 PetscBool3 issymmetric, ishermitian; 4299 char convname[256], mtype[256]; 4300 Mat B; 4301 4302 PetscFunctionBegin; 4303 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 4304 PetscValidType(mat, 1); 4305 PetscAssertPointer(M, 4); 4306 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 4307 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 4308 MatCheckPreallocated(mat, 1); 4309 4310 PetscCall(PetscOptionsGetString(((PetscObject)mat)->options, ((PetscObject)mat)->prefix, "-matconvert_type", mtype, sizeof(mtype), &flg)); 4311 if (flg) newtype = mtype; 4312 4313 PetscCall(PetscObjectTypeCompare((PetscObject)mat, newtype, &sametype)); 4314 PetscCall(PetscStrcmp(newtype, "same", &issame)); 4315 PetscCheck(!(reuse == MAT_INPLACE_MATRIX) || !(mat != *M), PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "MAT_INPLACE_MATRIX requires same input and output matrix"); 4316 if (reuse == MAT_REUSE_MATRIX) { 4317 PetscValidHeaderSpecific(*M, MAT_CLASSID, 4); 4318 PetscCheck(mat != *M, PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "MAT_REUSE_MATRIX means reuse matrix in final argument, perhaps you mean MAT_INPLACE_MATRIX"); 4319 } 4320 4321 if ((reuse == MAT_INPLACE_MATRIX) && (issame || sametype)) { 4322 PetscCall(PetscInfo(mat, "Early return for inplace %s %d %d\n", ((PetscObject)mat)->type_name, sametype, issame)); 4323 PetscFunctionReturn(PETSC_SUCCESS); 4324 } 4325 4326 /* Cache Mat options because some converters use MatHeaderReplace */ 4327 issymmetric = mat->symmetric; 4328 ishermitian = mat->hermitian; 4329 4330 if ((sametype || issame) && (reuse == MAT_INITIAL_MATRIX) && mat->ops->duplicate) { 4331 PetscCall(PetscInfo(mat, "Calling duplicate for initial matrix %s %d %d\n", ((PetscObject)mat)->type_name, sametype, issame)); 4332 PetscUseTypeMethod(mat, duplicate, MAT_COPY_VALUES, M); 4333 } else { 4334 PetscErrorCode (*conv)(Mat, MatType, MatReuse, Mat *) = NULL; 4335 const char *prefix[3] = {"seq", "mpi", ""}; 4336 PetscInt i; 4337 /* 4338 Order of precedence: 4339 0) See if newtype is a superclass of the current matrix. 4340 1) See if a specialized converter is known to the current matrix. 4341 2) See if a specialized converter is known to the desired matrix class. 4342 3) See if a good general converter is registered for the desired class 4343 (as of 6/27/03 only MATMPIADJ falls into this category). 4344 4) See if a good general converter is known for the current matrix. 4345 5) Use a really basic converter. 4346 */ 4347 4348 /* 0) See if newtype is a superclass of the current matrix. 4349 i.e mat is mpiaij and newtype is aij */ 4350 for (i = 0; i < 2; i++) { 4351 PetscCall(PetscStrncpy(convname, prefix[i], sizeof(convname))); 4352 PetscCall(PetscStrlcat(convname, newtype, sizeof(convname))); 4353 PetscCall(PetscStrcmp(convname, ((PetscObject)mat)->type_name, &flg)); 4354 PetscCall(PetscInfo(mat, "Check superclass %s %s -> %d\n", convname, ((PetscObject)mat)->type_name, flg)); 4355 if (flg) { 4356 if (reuse == MAT_INPLACE_MATRIX) { 4357 PetscCall(PetscInfo(mat, "Early return\n")); 4358 PetscFunctionReturn(PETSC_SUCCESS); 4359 } else if (reuse == MAT_INITIAL_MATRIX && mat->ops->duplicate) { 4360 PetscCall(PetscInfo(mat, "Calling MatDuplicate\n")); 4361 PetscUseTypeMethod(mat, duplicate, MAT_COPY_VALUES, M); 4362 PetscFunctionReturn(PETSC_SUCCESS); 4363 } else if (reuse == MAT_REUSE_MATRIX && mat->ops->copy) { 4364 PetscCall(PetscInfo(mat, "Calling MatCopy\n")); 4365 PetscCall(MatCopy(mat, *M, SAME_NONZERO_PATTERN)); 4366 PetscFunctionReturn(PETSC_SUCCESS); 4367 } 4368 } 4369 } 4370 /* 1) See if a specialized converter is known to the current matrix and the desired class */ 4371 for (i = 0; i < 3; i++) { 4372 PetscCall(PetscStrncpy(convname, "MatConvert_", sizeof(convname))); 4373 PetscCall(PetscStrlcat(convname, ((PetscObject)mat)->type_name, sizeof(convname))); 4374 PetscCall(PetscStrlcat(convname, "_", sizeof(convname))); 4375 PetscCall(PetscStrlcat(convname, prefix[i], sizeof(convname))); 4376 PetscCall(PetscStrlcat(convname, issame ? ((PetscObject)mat)->type_name : newtype, sizeof(convname))); 4377 PetscCall(PetscStrlcat(convname, "_C", sizeof(convname))); 4378 PetscCall(PetscObjectQueryFunction((PetscObject)mat, convname, &conv)); 4379 PetscCall(PetscInfo(mat, "Check specialized (1) %s (%s) -> %d\n", convname, ((PetscObject)mat)->type_name, !!conv)); 4380 if (conv) goto foundconv; 4381 } 4382 4383 /* 2) See if a specialized converter is known to the desired matrix class. */ 4384 PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &B)); 4385 PetscCall(MatSetSizes(B, mat->rmap->n, mat->cmap->n, mat->rmap->N, mat->cmap->N)); 4386 PetscCall(MatSetType(B, newtype)); 4387 for (i = 0; i < 3; i++) { 4388 PetscCall(PetscStrncpy(convname, "MatConvert_", sizeof(convname))); 4389 PetscCall(PetscStrlcat(convname, ((PetscObject)mat)->type_name, sizeof(convname))); 4390 PetscCall(PetscStrlcat(convname, "_", sizeof(convname))); 4391 PetscCall(PetscStrlcat(convname, prefix[i], sizeof(convname))); 4392 PetscCall(PetscStrlcat(convname, newtype, sizeof(convname))); 4393 PetscCall(PetscStrlcat(convname, "_C", sizeof(convname))); 4394 PetscCall(PetscObjectQueryFunction((PetscObject)B, convname, &conv)); 4395 PetscCall(PetscInfo(mat, "Check specialized (2) %s (%s) -> %d\n", convname, ((PetscObject)B)->type_name, !!conv)); 4396 if (conv) { 4397 PetscCall(MatDestroy(&B)); 4398 goto foundconv; 4399 } 4400 } 4401 4402 /* 3) See if a good general converter is registered for the desired class */ 4403 conv = B->ops->convertfrom; 4404 PetscCall(PetscInfo(mat, "Check convertfrom (%s) -> %d\n", ((PetscObject)B)->type_name, !!conv)); 4405 PetscCall(MatDestroy(&B)); 4406 if (conv) goto foundconv; 4407 4408 /* 4) See if a good general converter is known for the current matrix */ 4409 if (mat->ops->convert) conv = mat->ops->convert; 4410 PetscCall(PetscInfo(mat, "Check general convert (%s) -> %d\n", ((PetscObject)mat)->type_name, !!conv)); 4411 if (conv) goto foundconv; 4412 4413 /* 5) Use a really basic converter. */ 4414 PetscCall(PetscInfo(mat, "Using MatConvert_Basic\n")); 4415 conv = MatConvert_Basic; 4416 4417 foundconv: 4418 PetscCall(PetscLogEventBegin(MAT_Convert, mat, 0, 0, 0)); 4419 PetscCall((*conv)(mat, newtype, reuse, M)); 4420 if (mat->rmap->mapping && mat->cmap->mapping && !(*M)->rmap->mapping && !(*M)->cmap->mapping) { 4421 /* the block sizes must be same if the mappings are copied over */ 4422 (*M)->rmap->bs = mat->rmap->bs; 4423 (*M)->cmap->bs = mat->cmap->bs; 4424 PetscCall(PetscObjectReference((PetscObject)mat->rmap->mapping)); 4425 PetscCall(PetscObjectReference((PetscObject)mat->cmap->mapping)); 4426 (*M)->rmap->mapping = mat->rmap->mapping; 4427 (*M)->cmap->mapping = mat->cmap->mapping; 4428 } 4429 (*M)->stencil.dim = mat->stencil.dim; 4430 (*M)->stencil.noc = mat->stencil.noc; 4431 for (i = 0; i <= mat->stencil.dim + (mat->stencil.noc ? 0 : -1); i++) { 4432 (*M)->stencil.dims[i] = mat->stencil.dims[i]; 4433 (*M)->stencil.starts[i] = mat->stencil.starts[i]; 4434 } 4435 PetscCall(PetscLogEventEnd(MAT_Convert, mat, 0, 0, 0)); 4436 } 4437 PetscCall(PetscObjectStateIncrease((PetscObject)*M)); 4438 4439 /* Copy Mat options */ 4440 if (issymmetric == PETSC_BOOL3_TRUE) PetscCall(MatSetOption(*M, MAT_SYMMETRIC, PETSC_TRUE)); 4441 else if (issymmetric == PETSC_BOOL3_FALSE) PetscCall(MatSetOption(*M, MAT_SYMMETRIC, PETSC_FALSE)); 4442 if (ishermitian == PETSC_BOOL3_TRUE) PetscCall(MatSetOption(*M, MAT_HERMITIAN, PETSC_TRUE)); 4443 else if (ishermitian == PETSC_BOOL3_FALSE) PetscCall(MatSetOption(*M, MAT_HERMITIAN, PETSC_FALSE)); 4444 PetscFunctionReturn(PETSC_SUCCESS); 4445 } 4446 4447 /*@C 4448 MatFactorGetSolverType - Returns name of the package providing the factorization routines 4449 4450 Not Collective 4451 4452 Input Parameter: 4453 . mat - the matrix, must be a factored matrix 4454 4455 Output Parameter: 4456 . type - the string name of the package (do not free this string) 4457 4458 Level: intermediate 4459 4460 Fortran Note: 4461 Pass in an empty string and the package name will be copied into it. Make sure the string is long enough. 4462 4463 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatSolverType`, `MatCopy()`, `MatDuplicate()`, `MatGetFactorAvailable()` 4464 @*/ 4465 PetscErrorCode MatFactorGetSolverType(Mat mat, MatSolverType *type) 4466 { 4467 PetscErrorCode (*conv)(Mat, MatSolverType *); 4468 4469 PetscFunctionBegin; 4470 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 4471 PetscValidType(mat, 1); 4472 PetscAssertPointer(type, 2); 4473 PetscCheck(mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Only for factored matrix"); 4474 PetscCall(PetscObjectQueryFunction((PetscObject)mat, "MatFactorGetSolverType_C", &conv)); 4475 if (conv) PetscCall((*conv)(mat, type)); 4476 else *type = MATSOLVERPETSC; 4477 PetscFunctionReturn(PETSC_SUCCESS); 4478 } 4479 4480 typedef struct _MatSolverTypeForSpecifcType *MatSolverTypeForSpecifcType; 4481 struct _MatSolverTypeForSpecifcType { 4482 MatType mtype; 4483 /* no entry for MAT_FACTOR_NONE */ 4484 PetscErrorCode (*createfactor[MAT_FACTOR_NUM_TYPES - 1])(Mat, MatFactorType, Mat *); 4485 MatSolverTypeForSpecifcType next; 4486 }; 4487 4488 typedef struct _MatSolverTypeHolder *MatSolverTypeHolder; 4489 struct _MatSolverTypeHolder { 4490 char *name; 4491 MatSolverTypeForSpecifcType handlers; 4492 MatSolverTypeHolder next; 4493 }; 4494 4495 static MatSolverTypeHolder MatSolverTypeHolders = NULL; 4496 4497 /*@C 4498 MatSolverTypeRegister - Registers a `MatSolverType` that works for a particular matrix type 4499 4500 Input Parameters: 4501 + package - name of the package, for example petsc or superlu 4502 . mtype - the matrix type that works with this package 4503 . ftype - the type of factorization supported by the package 4504 - createfactor - routine that will create the factored matrix ready to be used 4505 4506 Level: developer 4507 4508 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatFactorGetSolverType()`, `MatCopy()`, `MatDuplicate()`, `MatGetFactorAvailable()`, 4509 `MatGetFactor()` 4510 @*/ 4511 PetscErrorCode MatSolverTypeRegister(MatSolverType package, MatType mtype, MatFactorType ftype, PetscErrorCode (*createfactor)(Mat, MatFactorType, Mat *)) 4512 { 4513 MatSolverTypeHolder next = MatSolverTypeHolders, prev = NULL; 4514 PetscBool flg; 4515 MatSolverTypeForSpecifcType inext, iprev = NULL; 4516 4517 PetscFunctionBegin; 4518 PetscCall(MatInitializePackage()); 4519 if (!next) { 4520 PetscCall(PetscNew(&MatSolverTypeHolders)); 4521 PetscCall(PetscStrallocpy(package, &MatSolverTypeHolders->name)); 4522 PetscCall(PetscNew(&MatSolverTypeHolders->handlers)); 4523 PetscCall(PetscStrallocpy(mtype, (char **)&MatSolverTypeHolders->handlers->mtype)); 4524 MatSolverTypeHolders->handlers->createfactor[(int)ftype - 1] = createfactor; 4525 PetscFunctionReturn(PETSC_SUCCESS); 4526 } 4527 while (next) { 4528 PetscCall(PetscStrcasecmp(package, next->name, &flg)); 4529 if (flg) { 4530 PetscCheck(next->handlers, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MatSolverTypeHolder is missing handlers"); 4531 inext = next->handlers; 4532 while (inext) { 4533 PetscCall(PetscStrcasecmp(mtype, inext->mtype, &flg)); 4534 if (flg) { 4535 inext->createfactor[(int)ftype - 1] = createfactor; 4536 PetscFunctionReturn(PETSC_SUCCESS); 4537 } 4538 iprev = inext; 4539 inext = inext->next; 4540 } 4541 PetscCall(PetscNew(&iprev->next)); 4542 PetscCall(PetscStrallocpy(mtype, (char **)&iprev->next->mtype)); 4543 iprev->next->createfactor[(int)ftype - 1] = createfactor; 4544 PetscFunctionReturn(PETSC_SUCCESS); 4545 } 4546 prev = next; 4547 next = next->next; 4548 } 4549 PetscCall(PetscNew(&prev->next)); 4550 PetscCall(PetscStrallocpy(package, &prev->next->name)); 4551 PetscCall(PetscNew(&prev->next->handlers)); 4552 PetscCall(PetscStrallocpy(mtype, (char **)&prev->next->handlers->mtype)); 4553 prev->next->handlers->createfactor[(int)ftype - 1] = createfactor; 4554 PetscFunctionReturn(PETSC_SUCCESS); 4555 } 4556 4557 /*@C 4558 MatSolverTypeGet - Gets the function that creates the factor matrix if it exist 4559 4560 Input Parameters: 4561 + type - name of the package, for example petsc or superlu, if this is 'NULL' then the first result that satisfies the other criteria is returned 4562 . ftype - the type of factorization supported by the type 4563 - mtype - the matrix type that works with this type 4564 4565 Output Parameters: 4566 + foundtype - `PETSC_TRUE` if the type was registered 4567 . foundmtype - `PETSC_TRUE` if the type supports the requested mtype 4568 - createfactor - routine that will create the factored matrix ready to be used or `NULL` if not found 4569 4570 Calling sequence of `createfactor`: 4571 + A - the matrix providing the factor matrix 4572 . mtype - the `MatType` of the factor requested 4573 - B - the new factor matrix that responds to MatXXFactorSymbolic,Numeric() functions, such as `MatLUFactorSymbolic()` 4574 4575 Level: developer 4576 4577 Note: 4578 When `type` is `NULL` the available functions are searched for based on the order of the calls to `MatSolverTypeRegister()` in `MatInitializePackage()`. 4579 Since different PETSc configurations may have different external solvers, seemingly identical runs with different PETSc configurations may use a different solver. 4580 For example if one configuration had --download-mumps while a different one had --download-superlu_dist. 4581 4582 .seealso: [](ch_matrices), `Mat`, `MatFactorType`, `MatType`, `MatCopy()`, `MatDuplicate()`, `MatGetFactorAvailable()`, `MatSolverTypeRegister()`, `MatGetFactor()`, 4583 `MatInitializePackage()` 4584 @*/ 4585 PetscErrorCode MatSolverTypeGet(MatSolverType type, MatType mtype, MatFactorType ftype, PetscBool *foundtype, PetscBool *foundmtype, PetscErrorCode (**createfactor)(Mat A, MatFactorType mtype, Mat *B)) 4586 { 4587 MatSolverTypeHolder next = MatSolverTypeHolders; 4588 PetscBool flg; 4589 MatSolverTypeForSpecifcType inext; 4590 4591 PetscFunctionBegin; 4592 if (foundtype) *foundtype = PETSC_FALSE; 4593 if (foundmtype) *foundmtype = PETSC_FALSE; 4594 if (createfactor) *createfactor = NULL; 4595 4596 if (type) { 4597 while (next) { 4598 PetscCall(PetscStrcasecmp(type, next->name, &flg)); 4599 if (flg) { 4600 if (foundtype) *foundtype = PETSC_TRUE; 4601 inext = next->handlers; 4602 while (inext) { 4603 PetscCall(PetscStrbeginswith(mtype, inext->mtype, &flg)); 4604 if (flg) { 4605 if (foundmtype) *foundmtype = PETSC_TRUE; 4606 if (createfactor) *createfactor = inext->createfactor[(int)ftype - 1]; 4607 PetscFunctionReturn(PETSC_SUCCESS); 4608 } 4609 inext = inext->next; 4610 } 4611 } 4612 next = next->next; 4613 } 4614 } else { 4615 while (next) { 4616 inext = next->handlers; 4617 while (inext) { 4618 PetscCall(PetscStrcmp(mtype, inext->mtype, &flg)); 4619 if (flg && inext->createfactor[(int)ftype - 1]) { 4620 if (foundtype) *foundtype = PETSC_TRUE; 4621 if (foundmtype) *foundmtype = PETSC_TRUE; 4622 if (createfactor) *createfactor = inext->createfactor[(int)ftype - 1]; 4623 PetscFunctionReturn(PETSC_SUCCESS); 4624 } 4625 inext = inext->next; 4626 } 4627 next = next->next; 4628 } 4629 /* try with base classes inext->mtype */ 4630 next = MatSolverTypeHolders; 4631 while (next) { 4632 inext = next->handlers; 4633 while (inext) { 4634 PetscCall(PetscStrbeginswith(mtype, inext->mtype, &flg)); 4635 if (flg && inext->createfactor[(int)ftype - 1]) { 4636 if (foundtype) *foundtype = PETSC_TRUE; 4637 if (foundmtype) *foundmtype = PETSC_TRUE; 4638 if (createfactor) *createfactor = inext->createfactor[(int)ftype - 1]; 4639 PetscFunctionReturn(PETSC_SUCCESS); 4640 } 4641 inext = inext->next; 4642 } 4643 next = next->next; 4644 } 4645 } 4646 PetscFunctionReturn(PETSC_SUCCESS); 4647 } 4648 4649 PetscErrorCode MatSolverTypeDestroy(void) 4650 { 4651 MatSolverTypeHolder next = MatSolverTypeHolders, prev; 4652 MatSolverTypeForSpecifcType inext, iprev; 4653 4654 PetscFunctionBegin; 4655 while (next) { 4656 PetscCall(PetscFree(next->name)); 4657 inext = next->handlers; 4658 while (inext) { 4659 PetscCall(PetscFree(inext->mtype)); 4660 iprev = inext; 4661 inext = inext->next; 4662 PetscCall(PetscFree(iprev)); 4663 } 4664 prev = next; 4665 next = next->next; 4666 PetscCall(PetscFree(prev)); 4667 } 4668 MatSolverTypeHolders = NULL; 4669 PetscFunctionReturn(PETSC_SUCCESS); 4670 } 4671 4672 /*@C 4673 MatFactorGetCanUseOrdering - Indicates if the factorization can use the ordering provided in `MatLUFactorSymbolic()`, `MatCholeskyFactorSymbolic()` 4674 4675 Logically Collective 4676 4677 Input Parameter: 4678 . mat - the matrix 4679 4680 Output Parameter: 4681 . flg - `PETSC_TRUE` if uses the ordering 4682 4683 Level: developer 4684 4685 Note: 4686 Most internal PETSc factorizations use the ordering passed to the factorization routine but external 4687 packages do not, thus we want to skip generating the ordering when it is not needed or used. 4688 4689 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatCopy()`, `MatDuplicate()`, `MatGetFactorAvailable()`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatCholeskyFactorSymbolic()` 4690 @*/ 4691 PetscErrorCode MatFactorGetCanUseOrdering(Mat mat, PetscBool *flg) 4692 { 4693 PetscFunctionBegin; 4694 *flg = mat->canuseordering; 4695 PetscFunctionReturn(PETSC_SUCCESS); 4696 } 4697 4698 /*@C 4699 MatFactorGetPreferredOrdering - The preferred ordering for a particular matrix factor object 4700 4701 Logically Collective 4702 4703 Input Parameters: 4704 + mat - the matrix obtained with `MatGetFactor()` 4705 - ftype - the factorization type to be used 4706 4707 Output Parameter: 4708 . otype - the preferred ordering type 4709 4710 Level: developer 4711 4712 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatFactorType`, `MatOrderingType`, `MatCopy()`, `MatDuplicate()`, `MatGetFactorAvailable()`, `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatCholeskyFactorSymbolic()` 4713 @*/ 4714 PetscErrorCode MatFactorGetPreferredOrdering(Mat mat, MatFactorType ftype, MatOrderingType *otype) 4715 { 4716 PetscFunctionBegin; 4717 *otype = mat->preferredordering[ftype]; 4718 PetscCheck(*otype, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MatFactor did not have a preferred ordering"); 4719 PetscFunctionReturn(PETSC_SUCCESS); 4720 } 4721 4722 /*@C 4723 MatGetFactor - Returns a matrix suitable to calls to MatXXFactorSymbolic,Numeric() 4724 4725 Collective 4726 4727 Input Parameters: 4728 + mat - the matrix 4729 . type - name of solver type, for example, superlu, petsc (to use PETSc's solver if it is available), if this is 'NULL' then the first result that satisfies 4730 the other criteria is returned 4731 - ftype - factor type, `MAT_FACTOR_LU`, `MAT_FACTOR_CHOLESKY`, `MAT_FACTOR_ICC`, `MAT_FACTOR_ILU`, `MAT_FACTOR_QR` 4732 4733 Output Parameter: 4734 . f - the factor matrix used with MatXXFactorSymbolic,Numeric() calls. Can be `NULL` in some cases, see notes below. 4735 4736 Options Database Keys: 4737 + -pc_factor_mat_solver_type <type> - choose the type at run time. When using `KSP` solvers 4738 - -mat_factor_bind_factorization <host, device> - Where to do matrix factorization? Default is device (might consume more device memory. 4739 One can choose host to save device memory). Currently only supported with `MATSEQAIJCUSPARSE` matrices. 4740 4741 Level: intermediate 4742 4743 Notes: 4744 The return matrix can be `NULL` if the requested factorization is not available, since some combinations of matrix types and factorization 4745 types registered with `MatSolverTypeRegister()` cannot be fully tested if not at runtime. 4746 4747 Users usually access the factorization solvers via `KSP` 4748 4749 Some PETSc matrix formats have alternative solvers available that are contained in alternative packages 4750 such as pastix, superlu, mumps etc. PETSc must have been ./configure to use the external solver, using the option --download-package or --with-package-dir 4751 4752 When `type` is `NULL` the available results are searched for based on the order of the calls to `MatSolverTypeRegister()` in `MatInitializePackage()`. 4753 Since different PETSc configurations may have different external solvers, seemingly identical runs with different PETSc configurations may use a different solver. 4754 For example if one configuration had --download-mumps while a different one had --download-superlu_dist. 4755 4756 Some of the packages have options for controlling the factorization, these are in the form -prefix_mat_packagename_packageoption 4757 where prefix is normally obtained from the calling `KSP`/`PC`. If `MatGetFactor()` is called directly one can set 4758 call `MatSetOptionsPrefixFactor()` on the originating matrix or `MatSetOptionsPrefix()` on the resulting factor matrix. 4759 4760 Developer Note: 4761 This should actually be called `MatCreateFactor()` since it creates a new factor object 4762 4763 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `KSP`, `MatSolverType`, `MatFactorType`, `MatCopy()`, `MatDuplicate()`, 4764 `MatGetFactorAvailable()`, `MatFactorGetCanUseOrdering()`, `MatSolverTypeRegister()`, `MatSolverTypeGet()` 4765 `MAT_FACTOR_LU`, `MAT_FACTOR_CHOLESKY`, `MAT_FACTOR_ICC`, `MAT_FACTOR_ILU`, `MAT_FACTOR_QR`, `MatInitializePackage()` 4766 @*/ 4767 PetscErrorCode MatGetFactor(Mat mat, MatSolverType type, MatFactorType ftype, Mat *f) 4768 { 4769 PetscBool foundtype, foundmtype; 4770 PetscErrorCode (*conv)(Mat, MatFactorType, Mat *); 4771 4772 PetscFunctionBegin; 4773 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 4774 PetscValidType(mat, 1); 4775 4776 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 4777 MatCheckPreallocated(mat, 1); 4778 4779 PetscCall(MatSolverTypeGet(type, ((PetscObject)mat)->type_name, ftype, &foundtype, &foundmtype, &conv)); 4780 if (!foundtype) { 4781 if (type) { 4782 SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_MISSING_FACTOR, "Could not locate solver type %s for factorization type %s and matrix type %s. Perhaps you must ./configure with --download-%s", type, MatFactorTypes[ftype], 4783 ((PetscObject)mat)->type_name, type); 4784 } else { 4785 SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_MISSING_FACTOR, "Could not locate a solver type for factorization type %s and matrix type %s.", MatFactorTypes[ftype], ((PetscObject)mat)->type_name); 4786 } 4787 } 4788 PetscCheck(foundmtype, PetscObjectComm((PetscObject)mat), PETSC_ERR_MISSING_FACTOR, "MatSolverType %s does not support matrix type %s", type, ((PetscObject)mat)->type_name); 4789 PetscCheck(conv, PetscObjectComm((PetscObject)mat), PETSC_ERR_MISSING_FACTOR, "MatSolverType %s does not support factorization type %s for matrix type %s", type, MatFactorTypes[ftype], ((PetscObject)mat)->type_name); 4790 4791 PetscCall((*conv)(mat, ftype, f)); 4792 if (mat->factorprefix) PetscCall(MatSetOptionsPrefix(*f, mat->factorprefix)); 4793 PetscFunctionReturn(PETSC_SUCCESS); 4794 } 4795 4796 /*@C 4797 MatGetFactorAvailable - Returns a a flag if matrix supports particular type and factor type 4798 4799 Not Collective 4800 4801 Input Parameters: 4802 + mat - the matrix 4803 . type - name of solver type, for example, superlu, petsc (to use PETSc's default) 4804 - ftype - factor type, `MAT_FACTOR_LU`, `MAT_FACTOR_CHOLESKY`, `MAT_FACTOR_ICC`, `MAT_FACTOR_ILU`, `MAT_FACTOR_QR` 4805 4806 Output Parameter: 4807 . flg - PETSC_TRUE if the factorization is available 4808 4809 Level: intermediate 4810 4811 Notes: 4812 Some PETSc matrix formats have alternative solvers available that are contained in alternative packages 4813 such as pastix, superlu, mumps etc. 4814 4815 PETSc must have been ./configure to use the external solver, using the option --download-package 4816 4817 Developer Note: 4818 This should actually be called `MatCreateFactorAvailable()` since `MatGetFactor()` creates a new factor object 4819 4820 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatSolverType`, `MatFactorType`, `MatGetFactor()`, `MatCopy()`, `MatDuplicate()`, `MatSolverTypeRegister()`, 4821 `MAT_FACTOR_LU`, `MAT_FACTOR_CHOLESKY`, `MAT_FACTOR_ICC`, `MAT_FACTOR_ILU`, `MAT_FACTOR_QR`, `MatSolverTypeGet()` 4822 @*/ 4823 PetscErrorCode MatGetFactorAvailable(Mat mat, MatSolverType type, MatFactorType ftype, PetscBool *flg) 4824 { 4825 PetscErrorCode (*gconv)(Mat, MatFactorType, Mat *); 4826 4827 PetscFunctionBegin; 4828 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 4829 PetscAssertPointer(flg, 4); 4830 4831 *flg = PETSC_FALSE; 4832 if (!((PetscObject)mat)->type_name) PetscFunctionReturn(PETSC_SUCCESS); 4833 4834 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 4835 MatCheckPreallocated(mat, 1); 4836 4837 PetscCall(MatSolverTypeGet(type, ((PetscObject)mat)->type_name, ftype, NULL, NULL, &gconv)); 4838 *flg = gconv ? PETSC_TRUE : PETSC_FALSE; 4839 PetscFunctionReturn(PETSC_SUCCESS); 4840 } 4841 4842 /*@ 4843 MatDuplicate - Duplicates a matrix including the non-zero structure. 4844 4845 Collective 4846 4847 Input Parameters: 4848 + mat - the matrix 4849 - op - One of `MAT_DO_NOT_COPY_VALUES`, `MAT_COPY_VALUES`, or `MAT_SHARE_NONZERO_PATTERN`. 4850 See the manual page for `MatDuplicateOption()` for an explanation of these options. 4851 4852 Output Parameter: 4853 . M - pointer to place new matrix 4854 4855 Level: intermediate 4856 4857 Notes: 4858 You cannot change the nonzero pattern for the parent or child matrix later if you use `MAT_SHARE_NONZERO_PATTERN`. 4859 4860 If `op` is not `MAT_COPY_VALUES` the numerical values in the new matrix are zeroed. 4861 4862 May be called with an unassembled input `Mat` if `MAT_DO_NOT_COPY_VALUES` is used, in which case the output `Mat` is unassembled as well. 4863 4864 When original mat is a product of matrix operation, e.g., an output of `MatMatMult()` or `MatCreateSubMatrix()`, only the matrix data structure of `mat` 4865 is duplicated and the internal data structures created for the reuse of previous matrix operations are not duplicated. 4866 User should not use `MatDuplicate()` to create new matrix `M` if `M` is intended to be reused as the product of matrix operation. 4867 4868 .seealso: [](ch_matrices), `Mat`, `MatCopy()`, `MatConvert()`, `MatDuplicateOption` 4869 @*/ 4870 PetscErrorCode MatDuplicate(Mat mat, MatDuplicateOption op, Mat *M) 4871 { 4872 Mat B; 4873 VecType vtype; 4874 PetscInt i; 4875 PetscObject dm, container_h, container_d; 4876 void (*viewf)(void); 4877 4878 PetscFunctionBegin; 4879 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 4880 PetscValidType(mat, 1); 4881 PetscAssertPointer(M, 3); 4882 PetscCheck(op != MAT_COPY_VALUES || mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "MAT_COPY_VALUES not allowed for unassembled matrix"); 4883 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 4884 MatCheckPreallocated(mat, 1); 4885 4886 *M = NULL; 4887 PetscCall(PetscLogEventBegin(MAT_Convert, mat, 0, 0, 0)); 4888 PetscUseTypeMethod(mat, duplicate, op, M); 4889 PetscCall(PetscLogEventEnd(MAT_Convert, mat, 0, 0, 0)); 4890 B = *M; 4891 4892 PetscCall(MatGetOperation(mat, MATOP_VIEW, &viewf)); 4893 if (viewf) PetscCall(MatSetOperation(B, MATOP_VIEW, viewf)); 4894 PetscCall(MatGetVecType(mat, &vtype)); 4895 PetscCall(MatSetVecType(B, vtype)); 4896 4897 B->stencil.dim = mat->stencil.dim; 4898 B->stencil.noc = mat->stencil.noc; 4899 for (i = 0; i <= mat->stencil.dim + (mat->stencil.noc ? 0 : -1); i++) { 4900 B->stencil.dims[i] = mat->stencil.dims[i]; 4901 B->stencil.starts[i] = mat->stencil.starts[i]; 4902 } 4903 4904 B->nooffproczerorows = mat->nooffproczerorows; 4905 B->nooffprocentries = mat->nooffprocentries; 4906 4907 PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_dm", &dm)); 4908 if (dm) PetscCall(PetscObjectCompose((PetscObject)B, "__PETSc_dm", dm)); 4909 PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", &container_h)); 4910 if (container_h) PetscCall(PetscObjectCompose((PetscObject)B, "__PETSc_MatCOOStruct_Host", container_h)); 4911 PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Device", &container_d)); 4912 if (container_d) PetscCall(PetscObjectCompose((PetscObject)B, "__PETSc_MatCOOStruct_Device", container_d)); 4913 PetscCall(PetscObjectStateIncrease((PetscObject)B)); 4914 PetscFunctionReturn(PETSC_SUCCESS); 4915 } 4916 4917 /*@ 4918 MatGetDiagonal - Gets the diagonal of a matrix as a `Vec` 4919 4920 Logically Collective 4921 4922 Input Parameter: 4923 . mat - the matrix 4924 4925 Output Parameter: 4926 . v - the diagonal of the matrix 4927 4928 Level: intermediate 4929 4930 Note: 4931 If `mat` has local sizes `n` x `m`, this routine fills the first `ndiag = min(n, m)` entries 4932 of `v` with the diagonal values. Thus `v` must have local size of at least `ndiag`. If `v` 4933 is larger than `ndiag`, the values of the remaining entries are unspecified. 4934 4935 Currently only correct in parallel for square matrices. 4936 4937 .seealso: [](ch_matrices), `Mat`, `Vec`, `MatGetRow()`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatGetRowMaxAbs()` 4938 @*/ 4939 PetscErrorCode MatGetDiagonal(Mat mat, Vec v) 4940 { 4941 PetscFunctionBegin; 4942 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 4943 PetscValidType(mat, 1); 4944 PetscValidHeaderSpecific(v, VEC_CLASSID, 2); 4945 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 4946 MatCheckPreallocated(mat, 1); 4947 if (PetscDefined(USE_DEBUG)) { 4948 PetscInt nv, row, col, ndiag; 4949 4950 PetscCall(VecGetLocalSize(v, &nv)); 4951 PetscCall(MatGetLocalSize(mat, &row, &col)); 4952 ndiag = PetscMin(row, col); 4953 PetscCheck(nv >= ndiag, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Nonconforming Mat and Vec. Vec local size %" PetscInt_FMT " < Mat local diagonal length %" PetscInt_FMT, nv, ndiag); 4954 } 4955 4956 PetscUseTypeMethod(mat, getdiagonal, v); 4957 PetscCall(PetscObjectStateIncrease((PetscObject)v)); 4958 PetscFunctionReturn(PETSC_SUCCESS); 4959 } 4960 4961 /*@C 4962 MatGetRowMin - Gets the minimum value (of the real part) of each 4963 row of the matrix 4964 4965 Logically Collective 4966 4967 Input Parameter: 4968 . mat - the matrix 4969 4970 Output Parameters: 4971 + v - the vector for storing the maximums 4972 - idx - the indices of the column found for each row (optional) 4973 4974 Level: intermediate 4975 4976 Note: 4977 The result of this call are the same as if one converted the matrix to dense format 4978 and found the minimum value in each row (i.e. the implicit zeros are counted as zeros). 4979 4980 This code is only implemented for a couple of matrix formats. 4981 4982 .seealso: [](ch_matrices), `Mat`, `MatGetDiagonal()`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatGetRowMaxAbs()`, `MatGetRowMinAbs()`, 4983 `MatGetRowMax()` 4984 @*/ 4985 PetscErrorCode MatGetRowMin(Mat mat, Vec v, PetscInt idx[]) 4986 { 4987 PetscFunctionBegin; 4988 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 4989 PetscValidType(mat, 1); 4990 PetscValidHeaderSpecific(v, VEC_CLASSID, 2); 4991 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 4992 4993 if (!mat->cmap->N) { 4994 PetscCall(VecSet(v, PETSC_MAX_REAL)); 4995 if (idx) { 4996 PetscInt i, m = mat->rmap->n; 4997 for (i = 0; i < m; i++) idx[i] = -1; 4998 } 4999 } else { 5000 MatCheckPreallocated(mat, 1); 5001 } 5002 PetscUseTypeMethod(mat, getrowmin, v, idx); 5003 PetscCall(PetscObjectStateIncrease((PetscObject)v)); 5004 PetscFunctionReturn(PETSC_SUCCESS); 5005 } 5006 5007 /*@C 5008 MatGetRowMinAbs - Gets the minimum value (in absolute value) of each 5009 row of the matrix 5010 5011 Logically Collective 5012 5013 Input Parameter: 5014 . mat - the matrix 5015 5016 Output Parameters: 5017 + v - the vector for storing the minimums 5018 - idx - the indices of the column found for each row (or `NULL` if not needed) 5019 5020 Level: intermediate 5021 5022 Notes: 5023 if a row is completely empty or has only 0.0 values then the `idx` value for that 5024 row is 0 (the first column). 5025 5026 This code is only implemented for a couple of matrix formats. 5027 5028 .seealso: [](ch_matrices), `Mat`, `MatGetDiagonal()`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatGetRowMax()`, `MatGetRowMaxAbs()`, `MatGetRowMin()` 5029 @*/ 5030 PetscErrorCode MatGetRowMinAbs(Mat mat, Vec v, PetscInt idx[]) 5031 { 5032 PetscFunctionBegin; 5033 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 5034 PetscValidType(mat, 1); 5035 PetscValidHeaderSpecific(v, VEC_CLASSID, 2); 5036 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 5037 PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 5038 5039 if (!mat->cmap->N) { 5040 PetscCall(VecSet(v, 0.0)); 5041 if (idx) { 5042 PetscInt i, m = mat->rmap->n; 5043 for (i = 0; i < m; i++) idx[i] = -1; 5044 } 5045 } else { 5046 MatCheckPreallocated(mat, 1); 5047 if (idx) PetscCall(PetscArrayzero(idx, mat->rmap->n)); 5048 PetscUseTypeMethod(mat, getrowminabs, v, idx); 5049 } 5050 PetscCall(PetscObjectStateIncrease((PetscObject)v)); 5051 PetscFunctionReturn(PETSC_SUCCESS); 5052 } 5053 5054 /*@C 5055 MatGetRowMax - Gets the maximum value (of the real part) of each 5056 row of the matrix 5057 5058 Logically Collective 5059 5060 Input Parameter: 5061 . mat - the matrix 5062 5063 Output Parameters: 5064 + v - the vector for storing the maximums 5065 - idx - the indices of the column found for each row (optional) 5066 5067 Level: intermediate 5068 5069 Notes: 5070 The result of this call are the same as if one converted the matrix to dense format 5071 and found the minimum value in each row (i.e. the implicit zeros are counted as zeros). 5072 5073 This code is only implemented for a couple of matrix formats. 5074 5075 .seealso: [](ch_matrices), `Mat`, `MatGetDiagonal()`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatGetRowMaxAbs()`, `MatGetRowMin()`, `MatGetRowMinAbs()` 5076 @*/ 5077 PetscErrorCode MatGetRowMax(Mat mat, Vec v, PetscInt idx[]) 5078 { 5079 PetscFunctionBegin; 5080 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 5081 PetscValidType(mat, 1); 5082 PetscValidHeaderSpecific(v, VEC_CLASSID, 2); 5083 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 5084 5085 if (!mat->cmap->N) { 5086 PetscCall(VecSet(v, PETSC_MIN_REAL)); 5087 if (idx) { 5088 PetscInt i, m = mat->rmap->n; 5089 for (i = 0; i < m; i++) idx[i] = -1; 5090 } 5091 } else { 5092 MatCheckPreallocated(mat, 1); 5093 PetscUseTypeMethod(mat, getrowmax, v, idx); 5094 } 5095 PetscCall(PetscObjectStateIncrease((PetscObject)v)); 5096 PetscFunctionReturn(PETSC_SUCCESS); 5097 } 5098 5099 /*@C 5100 MatGetRowMaxAbs - Gets the maximum value (in absolute value) of each 5101 row of the matrix 5102 5103 Logically Collective 5104 5105 Input Parameter: 5106 . mat - the matrix 5107 5108 Output Parameters: 5109 + v - the vector for storing the maximums 5110 - idx - the indices of the column found for each row (or `NULL` if not needed) 5111 5112 Level: intermediate 5113 5114 Notes: 5115 if a row is completely empty or has only 0.0 values then the `idx` value for that 5116 row is 0 (the first column). 5117 5118 This code is only implemented for a couple of matrix formats. 5119 5120 .seealso: [](ch_matrices), `Mat`, `MatGetDiagonal()`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatGetRowMax()`, `MatGetRowMin()`, `MatGetRowMinAbs()` 5121 @*/ 5122 PetscErrorCode MatGetRowMaxAbs(Mat mat, Vec v, PetscInt idx[]) 5123 { 5124 PetscFunctionBegin; 5125 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 5126 PetscValidType(mat, 1); 5127 PetscValidHeaderSpecific(v, VEC_CLASSID, 2); 5128 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 5129 5130 if (!mat->cmap->N) { 5131 PetscCall(VecSet(v, 0.0)); 5132 if (idx) { 5133 PetscInt i, m = mat->rmap->n; 5134 for (i = 0; i < m; i++) idx[i] = -1; 5135 } 5136 } else { 5137 MatCheckPreallocated(mat, 1); 5138 if (idx) PetscCall(PetscArrayzero(idx, mat->rmap->n)); 5139 PetscUseTypeMethod(mat, getrowmaxabs, v, idx); 5140 } 5141 PetscCall(PetscObjectStateIncrease((PetscObject)v)); 5142 PetscFunctionReturn(PETSC_SUCCESS); 5143 } 5144 5145 /*@ 5146 MatGetRowSum - Gets the sum of each row of the matrix 5147 5148 Logically or Neighborhood Collective 5149 5150 Input Parameter: 5151 . mat - the matrix 5152 5153 Output Parameter: 5154 . v - the vector for storing the sum of rows 5155 5156 Level: intermediate 5157 5158 Note: 5159 This code is slow since it is not currently specialized for different formats 5160 5161 .seealso: [](ch_matrices), `Mat`, `MatGetDiagonal()`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatGetRowMax()`, `MatGetRowMin()`, `MatGetRowMaxAbs()`, `MatGetRowMinAbs()` 5162 @*/ 5163 PetscErrorCode MatGetRowSum(Mat mat, Vec v) 5164 { 5165 Vec ones; 5166 5167 PetscFunctionBegin; 5168 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 5169 PetscValidType(mat, 1); 5170 PetscValidHeaderSpecific(v, VEC_CLASSID, 2); 5171 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 5172 MatCheckPreallocated(mat, 1); 5173 PetscCall(MatCreateVecs(mat, &ones, NULL)); 5174 PetscCall(VecSet(ones, 1.)); 5175 PetscCall(MatMult(mat, ones, v)); 5176 PetscCall(VecDestroy(&ones)); 5177 PetscFunctionReturn(PETSC_SUCCESS); 5178 } 5179 5180 /*@ 5181 MatTransposeSetPrecursor - Set the matrix from which the second matrix will receive numerical transpose data with a call to `MatTranspose`(A,`MAT_REUSE_MATRIX`,&B) 5182 when B was not obtained with `MatTranspose`(A,`MAT_INITIAL_MATRIX`,&B) 5183 5184 Collective 5185 5186 Input Parameter: 5187 . mat - the matrix to provide the transpose 5188 5189 Output Parameter: 5190 . B - the matrix to contain the transpose; it MUST have the nonzero structure of the transpose of A or the code will crash or generate incorrect results 5191 5192 Level: advanced 5193 5194 Note: 5195 Normally the use of `MatTranspose`(A, `MAT_REUSE_MATRIX`, &B) requires that `B` was obtained with a call to `MatTranspose`(A, `MAT_INITIAL_MATRIX`, &B). This 5196 routine allows bypassing that call. 5197 5198 .seealso: [](ch_matrices), `Mat`, `MatTransposeSymbolic()`, `MatTranspose()`, `MatMultTranspose()`, `MatMultTransposeAdd()`, `MatIsTranspose()`, `MatReuse`, `MAT_INITIAL_MATRIX`, `MAT_REUSE_MATRIX`, `MAT_INPLACE_MATRIX` 5199 @*/ 5200 PetscErrorCode MatTransposeSetPrecursor(Mat mat, Mat B) 5201 { 5202 PetscContainer rB = NULL; 5203 MatParentState *rb = NULL; 5204 5205 PetscFunctionBegin; 5206 PetscCall(PetscNew(&rb)); 5207 rb->id = ((PetscObject)mat)->id; 5208 rb->state = 0; 5209 PetscCall(MatGetNonzeroState(mat, &rb->nonzerostate)); 5210 PetscCall(PetscContainerCreate(PetscObjectComm((PetscObject)B), &rB)); 5211 PetscCall(PetscContainerSetPointer(rB, rb)); 5212 PetscCall(PetscContainerSetUserDestroy(rB, PetscContainerUserDestroyDefault)); 5213 PetscCall(PetscObjectCompose((PetscObject)B, "MatTransposeParent", (PetscObject)rB)); 5214 PetscCall(PetscObjectDereference((PetscObject)rB)); 5215 PetscFunctionReturn(PETSC_SUCCESS); 5216 } 5217 5218 /*@ 5219 MatTranspose - Computes an in-place or out-of-place transpose of a matrix. 5220 5221 Collective 5222 5223 Input Parameters: 5224 + mat - the matrix to transpose 5225 - reuse - either `MAT_INITIAL_MATRIX`, `MAT_REUSE_MATRIX`, or `MAT_INPLACE_MATRIX` 5226 5227 Output Parameter: 5228 . B - the transpose 5229 5230 Level: intermediate 5231 5232 Notes: 5233 If you use `MAT_INPLACE_MATRIX` then you must pass in `&mat` for `B` 5234 5235 `MAT_REUSE_MATRIX` uses the `B` matrix obtained from a previous call to this function with `MAT_INITIAL_MATRIX`. If you already have a matrix to contain the 5236 transpose, call `MatTransposeSetPrecursor(mat, B)` before calling this routine. 5237 5238 If the nonzero structure of mat changed from the previous call to this function with the same matrices an error will be generated for some matrix types. 5239 5240 Consider using `MatCreateTranspose()` instead if you only need a matrix that behaves like the transpose, but don't need the storage to be changed. 5241 5242 If mat is unchanged from the last call this function returns immediately without recomputing the result 5243 5244 If you only need the symbolic transpose, and not the numerical values, use `MatTransposeSymbolic()` 5245 5246 .seealso: [](ch_matrices), `Mat`, `MatTransposeSetPrecursor()`, `MatMultTranspose()`, `MatMultTransposeAdd()`, `MatIsTranspose()`, `MatReuse`, `MAT_INITIAL_MATRIX`, `MAT_REUSE_MATRIX`, `MAT_INPLACE_MATRIX`, 5247 `MatTransposeSymbolic()`, `MatCreateTranspose()` 5248 @*/ 5249 PetscErrorCode MatTranspose(Mat mat, MatReuse reuse, Mat *B) 5250 { 5251 PetscContainer rB = NULL; 5252 MatParentState *rb = NULL; 5253 5254 PetscFunctionBegin; 5255 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 5256 PetscValidType(mat, 1); 5257 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 5258 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 5259 PetscCheck(reuse != MAT_INPLACE_MATRIX || mat == *B, PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "MAT_INPLACE_MATRIX requires last matrix to match first"); 5260 PetscCheck(reuse != MAT_REUSE_MATRIX || mat != *B, PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "Perhaps you mean MAT_INPLACE_MATRIX"); 5261 MatCheckPreallocated(mat, 1); 5262 if (reuse == MAT_REUSE_MATRIX) { 5263 PetscCall(PetscObjectQuery((PetscObject)*B, "MatTransposeParent", (PetscObject *)&rB)); 5264 PetscCheck(rB, PetscObjectComm((PetscObject)*B), PETSC_ERR_ARG_WRONG, "Reuse matrix used was not generated from call to MatTranspose(). Suggest MatTransposeSetPrecursor()."); 5265 PetscCall(PetscContainerGetPointer(rB, (void **)&rb)); 5266 PetscCheck(rb->id == ((PetscObject)mat)->id, PetscObjectComm((PetscObject)*B), PETSC_ERR_ARG_WRONG, "Reuse matrix used was not generated from input matrix"); 5267 if (rb->state == ((PetscObject)mat)->state) PetscFunctionReturn(PETSC_SUCCESS); 5268 } 5269 5270 PetscCall(PetscLogEventBegin(MAT_Transpose, mat, 0, 0, 0)); 5271 if (reuse != MAT_INPLACE_MATRIX || mat->symmetric != PETSC_BOOL3_TRUE) { 5272 PetscUseTypeMethod(mat, transpose, reuse, B); 5273 PetscCall(PetscObjectStateIncrease((PetscObject)*B)); 5274 } 5275 PetscCall(PetscLogEventEnd(MAT_Transpose, mat, 0, 0, 0)); 5276 5277 if (reuse == MAT_INITIAL_MATRIX) PetscCall(MatTransposeSetPrecursor(mat, *B)); 5278 if (reuse != MAT_INPLACE_MATRIX) { 5279 PetscCall(PetscObjectQuery((PetscObject)*B, "MatTransposeParent", (PetscObject *)&rB)); 5280 PetscCall(PetscContainerGetPointer(rB, (void **)&rb)); 5281 rb->state = ((PetscObject)mat)->state; 5282 rb->nonzerostate = mat->nonzerostate; 5283 } 5284 PetscFunctionReturn(PETSC_SUCCESS); 5285 } 5286 5287 /*@ 5288 MatTransposeSymbolic - Computes the symbolic part of the transpose of a matrix. 5289 5290 Collective 5291 5292 Input Parameter: 5293 . A - the matrix to transpose 5294 5295 Output Parameter: 5296 . B - the transpose. This is a complete matrix but the numerical portion is invalid. One can call `MatTranspose`(A,`MAT_REUSE_MATRIX`,&B) to compute the 5297 numerical portion. 5298 5299 Level: intermediate 5300 5301 Note: 5302 This is not supported for many matrix types, use `MatTranspose()` in those cases 5303 5304 .seealso: [](ch_matrices), `Mat`, `MatTransposeSetPrecursor()`, `MatTranspose()`, `MatMultTranspose()`, `MatMultTransposeAdd()`, `MatIsTranspose()`, `MatReuse`, `MAT_INITIAL_MATRIX`, `MAT_REUSE_MATRIX`, `MAT_INPLACE_MATRIX` 5305 @*/ 5306 PetscErrorCode MatTransposeSymbolic(Mat A, Mat *B) 5307 { 5308 PetscFunctionBegin; 5309 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 5310 PetscValidType(A, 1); 5311 PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 5312 PetscCheck(!A->factortype, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 5313 PetscCall(PetscLogEventBegin(MAT_Transpose, A, 0, 0, 0)); 5314 PetscUseTypeMethod(A, transposesymbolic, B); 5315 PetscCall(PetscLogEventEnd(MAT_Transpose, A, 0, 0, 0)); 5316 5317 PetscCall(MatTransposeSetPrecursor(A, *B)); 5318 PetscFunctionReturn(PETSC_SUCCESS); 5319 } 5320 5321 PetscErrorCode MatTransposeCheckNonzeroState_Private(Mat A, Mat B) 5322 { 5323 PetscContainer rB; 5324 MatParentState *rb; 5325 5326 PetscFunctionBegin; 5327 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 5328 PetscValidType(A, 1); 5329 PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 5330 PetscCheck(!A->factortype, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 5331 PetscCall(PetscObjectQuery((PetscObject)B, "MatTransposeParent", (PetscObject *)&rB)); 5332 PetscCheck(rB, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_WRONG, "Reuse matrix used was not generated from call to MatTranspose()"); 5333 PetscCall(PetscContainerGetPointer(rB, (void **)&rb)); 5334 PetscCheck(rb->id == ((PetscObject)A)->id, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_WRONG, "Reuse matrix used was not generated from input matrix"); 5335 PetscCheck(rb->nonzerostate == A->nonzerostate, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_WRONGSTATE, "Reuse matrix has changed nonzero structure"); 5336 PetscFunctionReturn(PETSC_SUCCESS); 5337 } 5338 5339 /*@ 5340 MatIsTranspose - Test whether a matrix is another one's transpose, 5341 or its own, in which case it tests symmetry. 5342 5343 Collective 5344 5345 Input Parameters: 5346 + A - the matrix to test 5347 . B - the matrix to test against, this can equal the first parameter 5348 - tol - tolerance, differences between entries smaller than this are counted as zero 5349 5350 Output Parameter: 5351 . flg - the result 5352 5353 Level: intermediate 5354 5355 Notes: 5356 Only available for `MATAIJ` matrices. 5357 5358 The sequential algorithm has a running time of the order of the number of nonzeros; the parallel 5359 test involves parallel copies of the block off-diagonal parts of the matrix. 5360 5361 .seealso: [](ch_matrices), `Mat`, `MatTranspose()`, `MatIsSymmetric()`, `MatIsHermitian()` 5362 @*/ 5363 PetscErrorCode MatIsTranspose(Mat A, Mat B, PetscReal tol, PetscBool *flg) 5364 { 5365 PetscErrorCode (*f)(Mat, Mat, PetscReal, PetscBool *), (*g)(Mat, Mat, PetscReal, PetscBool *); 5366 5367 PetscFunctionBegin; 5368 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 5369 PetscValidHeaderSpecific(B, MAT_CLASSID, 2); 5370 PetscAssertPointer(flg, 4); 5371 PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatIsTranspose_C", &f)); 5372 PetscCall(PetscObjectQueryFunction((PetscObject)B, "MatIsTranspose_C", &g)); 5373 *flg = PETSC_FALSE; 5374 if (f && g) { 5375 PetscCheck(f == g, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_NOTSAMETYPE, "Matrices do not have the same comparator for symmetry test"); 5376 PetscCall((*f)(A, B, tol, flg)); 5377 } else { 5378 MatType mattype; 5379 5380 PetscCall(MatGetType(f ? B : A, &mattype)); 5381 SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Matrix of type %s does not support checking for transpose", mattype); 5382 } 5383 PetscFunctionReturn(PETSC_SUCCESS); 5384 } 5385 5386 /*@ 5387 MatHermitianTranspose - Computes an in-place or out-of-place Hermitian transpose of a matrix in complex conjugate. 5388 5389 Collective 5390 5391 Input Parameters: 5392 + mat - the matrix to transpose and complex conjugate 5393 - reuse - either `MAT_INITIAL_MATRIX`, `MAT_REUSE_MATRIX`, or `MAT_INPLACE_MATRIX` 5394 5395 Output Parameter: 5396 . B - the Hermitian transpose 5397 5398 Level: intermediate 5399 5400 .seealso: [](ch_matrices), `Mat`, `MatTranspose()`, `MatMultTranspose()`, `MatMultTransposeAdd()`, `MatIsTranspose()`, `MatReuse` 5401 @*/ 5402 PetscErrorCode MatHermitianTranspose(Mat mat, MatReuse reuse, Mat *B) 5403 { 5404 PetscFunctionBegin; 5405 PetscCall(MatTranspose(mat, reuse, B)); 5406 #if defined(PETSC_USE_COMPLEX) 5407 PetscCall(MatConjugate(*B)); 5408 #endif 5409 PetscFunctionReturn(PETSC_SUCCESS); 5410 } 5411 5412 /*@ 5413 MatIsHermitianTranspose - Test whether a matrix is another one's Hermitian transpose, 5414 5415 Collective 5416 5417 Input Parameters: 5418 + A - the matrix to test 5419 . B - the matrix to test against, this can equal the first parameter 5420 - tol - tolerance, differences between entries smaller than this are counted as zero 5421 5422 Output Parameter: 5423 . flg - the result 5424 5425 Level: intermediate 5426 5427 Notes: 5428 Only available for `MATAIJ` matrices. 5429 5430 The sequential algorithm 5431 has a running time of the order of the number of nonzeros; the parallel 5432 test involves parallel copies of the block off-diagonal parts of the matrix. 5433 5434 .seealso: [](ch_matrices), `Mat`, `MatTranspose()`, `MatIsSymmetric()`, `MatIsHermitian()`, `MatIsTranspose()` 5435 @*/ 5436 PetscErrorCode MatIsHermitianTranspose(Mat A, Mat B, PetscReal tol, PetscBool *flg) 5437 { 5438 PetscErrorCode (*f)(Mat, Mat, PetscReal, PetscBool *), (*g)(Mat, Mat, PetscReal, PetscBool *); 5439 5440 PetscFunctionBegin; 5441 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 5442 PetscValidHeaderSpecific(B, MAT_CLASSID, 2); 5443 PetscAssertPointer(flg, 4); 5444 PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatIsHermitianTranspose_C", &f)); 5445 PetscCall(PetscObjectQueryFunction((PetscObject)B, "MatIsHermitianTranspose_C", &g)); 5446 if (f && g) { 5447 PetscCheck(f != g, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_NOTSAMETYPE, "Matrices do not have the same comparator for Hermitian test"); 5448 PetscCall((*f)(A, B, tol, flg)); 5449 } 5450 PetscFunctionReturn(PETSC_SUCCESS); 5451 } 5452 5453 /*@ 5454 MatPermute - Creates a new matrix with rows and columns permuted from the 5455 original. 5456 5457 Collective 5458 5459 Input Parameters: 5460 + mat - the matrix to permute 5461 . row - row permutation, each processor supplies only the permutation for its rows 5462 - col - column permutation, each processor supplies only the permutation for its columns 5463 5464 Output Parameter: 5465 . B - the permuted matrix 5466 5467 Level: advanced 5468 5469 Note: 5470 The index sets map from row/col of permuted matrix to row/col of original matrix. 5471 The index sets should be on the same communicator as mat and have the same local sizes. 5472 5473 Developer Note: 5474 If you want to implement `MatPermute()` for a matrix type, and your approach doesn't 5475 exploit the fact that row and col are permutations, consider implementing the 5476 more general `MatCreateSubMatrix()` instead. 5477 5478 .seealso: [](ch_matrices), `Mat`, `MatGetOrdering()`, `ISAllGather()`, `MatCreateSubMatrix()` 5479 @*/ 5480 PetscErrorCode MatPermute(Mat mat, IS row, IS col, Mat *B) 5481 { 5482 PetscFunctionBegin; 5483 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 5484 PetscValidType(mat, 1); 5485 PetscValidHeaderSpecific(row, IS_CLASSID, 2); 5486 PetscValidHeaderSpecific(col, IS_CLASSID, 3); 5487 PetscAssertPointer(B, 4); 5488 PetscCheckSameComm(mat, 1, row, 2); 5489 if (row != col) PetscCheckSameComm(row, 2, col, 3); 5490 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 5491 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 5492 PetscCheck(mat->ops->permute || mat->ops->createsubmatrix, PETSC_COMM_SELF, PETSC_ERR_SUP, "MatPermute not available for Mat type %s", ((PetscObject)mat)->type_name); 5493 MatCheckPreallocated(mat, 1); 5494 5495 if (mat->ops->permute) { 5496 PetscUseTypeMethod(mat, permute, row, col, B); 5497 PetscCall(PetscObjectStateIncrease((PetscObject)*B)); 5498 } else { 5499 PetscCall(MatCreateSubMatrix(mat, row, col, MAT_INITIAL_MATRIX, B)); 5500 } 5501 PetscFunctionReturn(PETSC_SUCCESS); 5502 } 5503 5504 /*@ 5505 MatEqual - Compares two matrices. 5506 5507 Collective 5508 5509 Input Parameters: 5510 + A - the first matrix 5511 - B - the second matrix 5512 5513 Output Parameter: 5514 . flg - `PETSC_TRUE` if the matrices are equal; `PETSC_FALSE` otherwise. 5515 5516 Level: intermediate 5517 5518 .seealso: [](ch_matrices), `Mat` 5519 @*/ 5520 PetscErrorCode MatEqual(Mat A, Mat B, PetscBool *flg) 5521 { 5522 PetscFunctionBegin; 5523 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 5524 PetscValidHeaderSpecific(B, MAT_CLASSID, 2); 5525 PetscValidType(A, 1); 5526 PetscValidType(B, 2); 5527 PetscAssertPointer(flg, 3); 5528 PetscCheckSameComm(A, 1, B, 2); 5529 MatCheckPreallocated(A, 1); 5530 MatCheckPreallocated(B, 2); 5531 PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 5532 PetscCheck(B->assembled, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 5533 PetscCheck(A->rmap->N == B->rmap->N && A->cmap->N == B->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_SIZ, "Mat A,Mat B: global dim %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, A->rmap->N, B->rmap->N, A->cmap->N, 5534 B->cmap->N); 5535 if (A->ops->equal && A->ops->equal == B->ops->equal) { 5536 PetscUseTypeMethod(A, equal, B, flg); 5537 } else { 5538 PetscCall(MatMultEqual(A, B, 10, flg)); 5539 } 5540 PetscFunctionReturn(PETSC_SUCCESS); 5541 } 5542 5543 /*@ 5544 MatDiagonalScale - Scales a matrix on the left and right by diagonal 5545 matrices that are stored as vectors. Either of the two scaling 5546 matrices can be `NULL`. 5547 5548 Collective 5549 5550 Input Parameters: 5551 + mat - the matrix to be scaled 5552 . l - the left scaling vector (or `NULL`) 5553 - r - the right scaling vector (or `NULL`) 5554 5555 Level: intermediate 5556 5557 Note: 5558 `MatDiagonalScale()` computes $A = LAR$, where 5559 L = a diagonal matrix (stored as a vector), R = a diagonal matrix (stored as a vector) 5560 The L scales the rows of the matrix, the R scales the columns of the matrix. 5561 5562 .seealso: [](ch_matrices), `Mat`, `MatScale()`, `MatShift()`, `MatDiagonalSet()` 5563 @*/ 5564 PetscErrorCode MatDiagonalScale(Mat mat, Vec l, Vec r) 5565 { 5566 PetscFunctionBegin; 5567 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 5568 PetscValidType(mat, 1); 5569 if (l) { 5570 PetscValidHeaderSpecific(l, VEC_CLASSID, 2); 5571 PetscCheckSameComm(mat, 1, l, 2); 5572 } 5573 if (r) { 5574 PetscValidHeaderSpecific(r, VEC_CLASSID, 3); 5575 PetscCheckSameComm(mat, 1, r, 3); 5576 } 5577 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 5578 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 5579 MatCheckPreallocated(mat, 1); 5580 if (!l && !r) PetscFunctionReturn(PETSC_SUCCESS); 5581 5582 PetscCall(PetscLogEventBegin(MAT_Scale, mat, 0, 0, 0)); 5583 PetscUseTypeMethod(mat, diagonalscale, l, r); 5584 PetscCall(PetscLogEventEnd(MAT_Scale, mat, 0, 0, 0)); 5585 PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 5586 if (l != r) mat->symmetric = PETSC_BOOL3_FALSE; 5587 PetscFunctionReturn(PETSC_SUCCESS); 5588 } 5589 5590 /*@ 5591 MatScale - Scales all elements of a matrix by a given number. 5592 5593 Logically Collective 5594 5595 Input Parameters: 5596 + mat - the matrix to be scaled 5597 - a - the scaling value 5598 5599 Level: intermediate 5600 5601 .seealso: [](ch_matrices), `Mat`, `MatDiagonalScale()` 5602 @*/ 5603 PetscErrorCode MatScale(Mat mat, PetscScalar a) 5604 { 5605 PetscFunctionBegin; 5606 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 5607 PetscValidType(mat, 1); 5608 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 5609 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 5610 PetscValidLogicalCollectiveScalar(mat, a, 2); 5611 MatCheckPreallocated(mat, 1); 5612 5613 PetscCall(PetscLogEventBegin(MAT_Scale, mat, 0, 0, 0)); 5614 if (a != (PetscScalar)1.0) { 5615 PetscUseTypeMethod(mat, scale, a); 5616 PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 5617 } 5618 PetscCall(PetscLogEventEnd(MAT_Scale, mat, 0, 0, 0)); 5619 PetscFunctionReturn(PETSC_SUCCESS); 5620 } 5621 5622 /*@ 5623 MatNorm - Calculates various norms of a matrix. 5624 5625 Collective 5626 5627 Input Parameters: 5628 + mat - the matrix 5629 - type - the type of norm, `NORM_1`, `NORM_FROBENIUS`, `NORM_INFINITY` 5630 5631 Output Parameter: 5632 . nrm - the resulting norm 5633 5634 Level: intermediate 5635 5636 .seealso: [](ch_matrices), `Mat` 5637 @*/ 5638 PetscErrorCode MatNorm(Mat mat, NormType type, PetscReal *nrm) 5639 { 5640 PetscFunctionBegin; 5641 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 5642 PetscValidType(mat, 1); 5643 PetscAssertPointer(nrm, 3); 5644 5645 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 5646 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 5647 MatCheckPreallocated(mat, 1); 5648 5649 PetscUseTypeMethod(mat, norm, type, nrm); 5650 PetscFunctionReturn(PETSC_SUCCESS); 5651 } 5652 5653 /* 5654 This variable is used to prevent counting of MatAssemblyBegin() that 5655 are called from within a MatAssemblyEnd(). 5656 */ 5657 static PetscInt MatAssemblyEnd_InUse = 0; 5658 /*@ 5659 MatAssemblyBegin - Begins assembling the matrix. This routine should 5660 be called after completing all calls to `MatSetValues()`. 5661 5662 Collective 5663 5664 Input Parameters: 5665 + mat - the matrix 5666 - type - type of assembly, either `MAT_FLUSH_ASSEMBLY` or `MAT_FINAL_ASSEMBLY` 5667 5668 Level: beginner 5669 5670 Notes: 5671 `MatSetValues()` generally caches the values that belong to other MPI processes. The matrix is ready to 5672 use only after `MatAssemblyBegin()` and `MatAssemblyEnd()` have been called. 5673 5674 Use `MAT_FLUSH_ASSEMBLY` when switching between `ADD_VALUES` and `INSERT_VALUES` 5675 in `MatSetValues()`; use `MAT_FINAL_ASSEMBLY` for the final assembly before 5676 using the matrix. 5677 5678 ALL processes that share a matrix MUST call `MatAssemblyBegin()` and `MatAssemblyEnd()` the SAME NUMBER of times, and each time with the 5679 same flag of `MAT_FLUSH_ASSEMBLY` or `MAT_FINAL_ASSEMBLY` for all processes. Thus you CANNOT locally change from `ADD_VALUES` to `INSERT_VALUES`, that is 5680 a global collective operation requiring all processes that share the matrix. 5681 5682 Space for preallocated nonzeros that is not filled by a call to `MatSetValues()` or a related routine are compressed 5683 out by assembly. If you intend to use that extra space on a subsequent assembly, be sure to insert explicit zeros 5684 before `MAT_FINAL_ASSEMBLY` so the space is not compressed out. 5685 5686 .seealso: [](ch_matrices), `Mat`, `MatAssemblyEnd()`, `MatSetValues()`, `MatAssembled()` 5687 @*/ 5688 PetscErrorCode MatAssemblyBegin(Mat mat, MatAssemblyType type) 5689 { 5690 PetscFunctionBegin; 5691 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 5692 PetscValidType(mat, 1); 5693 MatCheckPreallocated(mat, 1); 5694 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix.\nDid you forget to call MatSetUnfactored()?"); 5695 if (mat->assembled) { 5696 mat->was_assembled = PETSC_TRUE; 5697 mat->assembled = PETSC_FALSE; 5698 } 5699 5700 if (!MatAssemblyEnd_InUse) { 5701 PetscCall(PetscLogEventBegin(MAT_AssemblyBegin, mat, 0, 0, 0)); 5702 PetscTryTypeMethod(mat, assemblybegin, type); 5703 PetscCall(PetscLogEventEnd(MAT_AssemblyBegin, mat, 0, 0, 0)); 5704 } else PetscTryTypeMethod(mat, assemblybegin, type); 5705 PetscFunctionReturn(PETSC_SUCCESS); 5706 } 5707 5708 /*@ 5709 MatAssembled - Indicates if a matrix has been assembled and is ready for 5710 use; for example, in matrix-vector product. 5711 5712 Not Collective 5713 5714 Input Parameter: 5715 . mat - the matrix 5716 5717 Output Parameter: 5718 . assembled - `PETSC_TRUE` or `PETSC_FALSE` 5719 5720 Level: advanced 5721 5722 .seealso: [](ch_matrices), `Mat`, `MatAssemblyEnd()`, `MatSetValues()`, `MatAssemblyBegin()` 5723 @*/ 5724 PetscErrorCode MatAssembled(Mat mat, PetscBool *assembled) 5725 { 5726 PetscFunctionBegin; 5727 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 5728 PetscAssertPointer(assembled, 2); 5729 *assembled = mat->assembled; 5730 PetscFunctionReturn(PETSC_SUCCESS); 5731 } 5732 5733 /*@ 5734 MatAssemblyEnd - Completes assembling the matrix. This routine should 5735 be called after `MatAssemblyBegin()`. 5736 5737 Collective 5738 5739 Input Parameters: 5740 + mat - the matrix 5741 - type - type of assembly, either `MAT_FLUSH_ASSEMBLY` or `MAT_FINAL_ASSEMBLY` 5742 5743 Options Database Keys: 5744 + -mat_view ::ascii_info - Prints info on matrix at conclusion of `MatAssemblyEnd()` 5745 . -mat_view ::ascii_info_detail - Prints more detailed info 5746 . -mat_view - Prints matrix in ASCII format 5747 . -mat_view ::ascii_matlab - Prints matrix in MATLAB format 5748 . -mat_view draw - draws nonzero structure of matrix, using `MatView()` and `PetscDrawOpenX()`. 5749 . -display <name> - Sets display name (default is host) 5750 . -draw_pause <sec> - Sets number of seconds to pause after display 5751 . -mat_view socket - Sends matrix to socket, can be accessed from MATLAB (See [Using MATLAB with PETSc](ch_matlab)) 5752 . -viewer_socket_machine <machine> - Machine to use for socket 5753 . -viewer_socket_port <port> - Port number to use for socket 5754 - -mat_view binary:filename[:append] - Save matrix to file in binary format 5755 5756 Level: beginner 5757 5758 .seealso: [](ch_matrices), `Mat`, `MatAssemblyBegin()`, `MatSetValues()`, `PetscDrawOpenX()`, `PetscDrawCreate()`, `MatView()`, `MatAssembled()`, `PetscViewerSocketOpen()` 5759 @*/ 5760 PetscErrorCode MatAssemblyEnd(Mat mat, MatAssemblyType type) 5761 { 5762 static PetscInt inassm = 0; 5763 PetscBool flg = PETSC_FALSE; 5764 5765 PetscFunctionBegin; 5766 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 5767 PetscValidType(mat, 1); 5768 5769 inassm++; 5770 MatAssemblyEnd_InUse++; 5771 if (MatAssemblyEnd_InUse == 1) { /* Do the logging only the first time through */ 5772 PetscCall(PetscLogEventBegin(MAT_AssemblyEnd, mat, 0, 0, 0)); 5773 PetscTryTypeMethod(mat, assemblyend, type); 5774 PetscCall(PetscLogEventEnd(MAT_AssemblyEnd, mat, 0, 0, 0)); 5775 } else PetscTryTypeMethod(mat, assemblyend, type); 5776 5777 /* Flush assembly is not a true assembly */ 5778 if (type != MAT_FLUSH_ASSEMBLY) { 5779 if (mat->num_ass) { 5780 if (!mat->symmetry_eternal) { 5781 mat->symmetric = PETSC_BOOL3_UNKNOWN; 5782 mat->hermitian = PETSC_BOOL3_UNKNOWN; 5783 } 5784 if (!mat->structural_symmetry_eternal && mat->ass_nonzerostate != mat->nonzerostate) mat->structurally_symmetric = PETSC_BOOL3_UNKNOWN; 5785 if (!mat->spd_eternal) mat->spd = PETSC_BOOL3_UNKNOWN; 5786 } 5787 mat->num_ass++; 5788 mat->assembled = PETSC_TRUE; 5789 mat->ass_nonzerostate = mat->nonzerostate; 5790 } 5791 5792 mat->insertmode = NOT_SET_VALUES; 5793 MatAssemblyEnd_InUse--; 5794 PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 5795 if (inassm == 1 && type != MAT_FLUSH_ASSEMBLY) { 5796 PetscCall(MatViewFromOptions(mat, NULL, "-mat_view")); 5797 5798 if (mat->checksymmetryonassembly) { 5799 PetscCall(MatIsSymmetric(mat, mat->checksymmetrytol, &flg)); 5800 if (flg) { 5801 PetscCall(PetscPrintf(PetscObjectComm((PetscObject)mat), "Matrix is symmetric (tolerance %g)\n", (double)mat->checksymmetrytol)); 5802 } else { 5803 PetscCall(PetscPrintf(PetscObjectComm((PetscObject)mat), "Matrix is not symmetric (tolerance %g)\n", (double)mat->checksymmetrytol)); 5804 } 5805 } 5806 if (mat->nullsp && mat->checknullspaceonassembly) PetscCall(MatNullSpaceTest(mat->nullsp, mat, NULL)); 5807 } 5808 inassm--; 5809 PetscFunctionReturn(PETSC_SUCCESS); 5810 } 5811 5812 // PetscClangLinter pragma disable: -fdoc-section-header-unknown 5813 /*@ 5814 MatSetOption - Sets a parameter option for a matrix. Some options 5815 may be specific to certain storage formats. Some options 5816 determine how values will be inserted (or added). Sorted, 5817 row-oriented input will generally assemble the fastest. The default 5818 is row-oriented. 5819 5820 Logically Collective for certain operations, such as `MAT_SPD`, not collective for `MAT_ROW_ORIENTED`, see `MatOption` 5821 5822 Input Parameters: 5823 + mat - the matrix 5824 . op - the option, one of those listed below (and possibly others), 5825 - flg - turn the option on (`PETSC_TRUE`) or off (`PETSC_FALSE`) 5826 5827 Options Describing Matrix Structure: 5828 + `MAT_SPD` - symmetric positive definite 5829 . `MAT_SYMMETRIC` - symmetric in terms of both structure and value 5830 . `MAT_HERMITIAN` - transpose is the complex conjugation 5831 . `MAT_STRUCTURALLY_SYMMETRIC` - symmetric nonzero structure 5832 . `MAT_SYMMETRY_ETERNAL` - indicates the symmetry (or Hermitian structure) or its absence will persist through any changes to the matrix 5833 . `MAT_STRUCTURAL_SYMMETRY_ETERNAL` - indicates the structural symmetry or its absence will persist through any changes to the matrix 5834 . `MAT_SPD_ETERNAL` - indicates the value of `MAT_SPD` (true or false) will persist through any changes to the matrix 5835 5836 These are not really options of the matrix, they are knowledge about the structure of the matrix that users may provide so that they 5837 do not need to be computed (usually at a high cost) 5838 5839 Options For Use with `MatSetValues()`: 5840 Insert a logically dense subblock, which can be 5841 . `MAT_ROW_ORIENTED` - row-oriented (default) 5842 5843 These options reflect the data you pass in with `MatSetValues()`; it has 5844 nothing to do with how the data is stored internally in the matrix 5845 data structure. 5846 5847 When (re)assembling a matrix, we can restrict the input for 5848 efficiency/debugging purposes. These options include 5849 . `MAT_NEW_NONZERO_LOCATIONS` - additional insertions will be allowed if they generate a new nonzero (slow) 5850 . `MAT_FORCE_DIAGONAL_ENTRIES` - forces diagonal entries to be allocated 5851 . `MAT_IGNORE_OFF_PROC_ENTRIES` - drops off-processor entries 5852 . `MAT_NEW_NONZERO_LOCATION_ERR` - generates an error for new matrix entry 5853 . `MAT_USE_HASH_TABLE` - uses a hash table to speed up matrix assembly 5854 . `MAT_NO_OFF_PROC_ENTRIES` - you know each process will only set values for its own rows, will generate an error if 5855 any process sets values for another process. This avoids all reductions in the MatAssembly routines and thus improves 5856 performance for very large process counts. 5857 - `MAT_SUBSET_OFF_PROC_ENTRIES` - you know that the first assembly after setting this flag will set a superset 5858 of the off-process entries required for all subsequent assemblies. This avoids a rendezvous step in the MatAssembly 5859 functions, instead sending only neighbor messages. 5860 5861 Level: intermediate 5862 5863 Notes: 5864 Except for `MAT_UNUSED_NONZERO_LOCATION_ERR` and `MAT_ROW_ORIENTED` all processes that share the matrix must pass the same value in flg! 5865 5866 Some options are relevant only for particular matrix types and 5867 are thus ignored by others. Other options are not supported by 5868 certain matrix types and will generate an error message if set. 5869 5870 If using Fortran to compute a matrix, one may need to 5871 use the column-oriented option (or convert to the row-oriented 5872 format). 5873 5874 `MAT_NEW_NONZERO_LOCATIONS` set to `PETSC_FALSE` indicates that any add or insertion 5875 that would generate a new entry in the nonzero structure is instead 5876 ignored. Thus, if memory has not already been allocated for this particular 5877 data, then the insertion is ignored. For dense matrices, in which 5878 the entire array is allocated, no entries are ever ignored. 5879 Set after the first `MatAssemblyEnd()`. If this option is set then the `MatAssemblyBegin()`/`MatAssemblyEnd()` processes has one less global reduction 5880 5881 `MAT_NEW_NONZERO_LOCATION_ERR` set to PETSC_TRUE indicates that any add or insertion 5882 that would generate a new entry in the nonzero structure instead produces 5883 an error. (Currently supported for `MATAIJ` and `MATBAIJ` formats only.) If this option is set then the `MatAssemblyBegin()`/`MatAssemblyEnd()` processes has one less global reduction 5884 5885 `MAT_NEW_NONZERO_ALLOCATION_ERR` set to `PETSC_TRUE` indicates that any add or insertion 5886 that would generate a new entry that has not been preallocated will 5887 instead produce an error. (Currently supported for `MATAIJ` and `MATBAIJ` formats 5888 only.) This is a useful flag when debugging matrix memory preallocation. 5889 If this option is set then the `MatAssemblyBegin()`/`MatAssemblyEnd()` processes has one less global reduction 5890 5891 `MAT_IGNORE_OFF_PROC_ENTRIES` set to `PETSC_TRUE` indicates entries destined for 5892 other processors should be dropped, rather than stashed. 5893 This is useful if you know that the "owning" processor is also 5894 always generating the correct matrix entries, so that PETSc need 5895 not transfer duplicate entries generated on another processor. 5896 5897 `MAT_USE_HASH_TABLE` indicates that a hash table be used to improve the 5898 searches during matrix assembly. When this flag is set, the hash table 5899 is created during the first matrix assembly. This hash table is 5900 used the next time through, during `MatSetValues()`/`MatSetValuesBlocked()` 5901 to improve the searching of indices. `MAT_NEW_NONZERO_LOCATIONS` flag 5902 should be used with `MAT_USE_HASH_TABLE` flag. This option is currently 5903 supported by `MATMPIBAIJ` format only. 5904 5905 `MAT_KEEP_NONZERO_PATTERN` indicates when `MatZeroRows()` is called the zeroed entries 5906 are kept in the nonzero structure 5907 5908 `MAT_IGNORE_ZERO_ENTRIES` - for `MATAIJ` and `MATIS` matrices this will stop zero values from creating 5909 a zero location in the matrix 5910 5911 `MAT_USE_INODES` - indicates using inode version of the code - works with `MATAIJ` matrix types 5912 5913 `MAT_NO_OFF_PROC_ZERO_ROWS` - you know each process will only zero its own rows. This avoids all reductions in the 5914 zero row routines and thus improves performance for very large process counts. 5915 5916 `MAT_IGNORE_LOWER_TRIANGULAR` - For `MATSBAIJ` matrices will ignore any insertions you make in the lower triangular 5917 part of the matrix (since they should match the upper triangular part). 5918 5919 `MAT_SORTED_FULL` - each process provides exactly its local rows; all column indices for a given row are passed in a 5920 single call to `MatSetValues()`, preallocation is perfect, row oriented, `INSERT_VALUES` is used. Common 5921 with finite difference schemes with non-periodic boundary conditions. 5922 5923 Developer Note: 5924 `MAT_SYMMETRY_ETERNAL`, `MAT_STRUCTURAL_SYMMETRY_ETERNAL`, and `MAT_SPD_ETERNAL` are used by `MatAssemblyEnd()` and in other 5925 places where otherwise the value of `MAT_SYMMETRIC`, `MAT_STRUCTURALLY_SYMMETRIC` or `MAT_SPD` would need to be changed back 5926 to `PETSC_BOOL3_UNKNOWN` because the matrix values had changed so the code cannot be certain that the related property had 5927 not changed. 5928 5929 .seealso: [](ch_matrices), `MatOption`, `Mat`, `MatGetOption()` 5930 @*/ 5931 PetscErrorCode MatSetOption(Mat mat, MatOption op, PetscBool flg) 5932 { 5933 PetscFunctionBegin; 5934 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 5935 if (op > 0) { 5936 PetscValidLogicalCollectiveEnum(mat, op, 2); 5937 PetscValidLogicalCollectiveBool(mat, flg, 3); 5938 } 5939 5940 PetscCheck(((int)op) > MAT_OPTION_MIN && ((int)op) < MAT_OPTION_MAX, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_OUTOFRANGE, "Options %d is out of range", (int)op); 5941 5942 switch (op) { 5943 case MAT_FORCE_DIAGONAL_ENTRIES: 5944 mat->force_diagonals = flg; 5945 PetscFunctionReturn(PETSC_SUCCESS); 5946 case MAT_NO_OFF_PROC_ENTRIES: 5947 mat->nooffprocentries = flg; 5948 PetscFunctionReturn(PETSC_SUCCESS); 5949 case MAT_SUBSET_OFF_PROC_ENTRIES: 5950 mat->assembly_subset = flg; 5951 if (!mat->assembly_subset) { /* See the same logic in VecAssembly wrt VEC_SUBSET_OFF_PROC_ENTRIES */ 5952 #if !defined(PETSC_HAVE_MPIUNI) 5953 PetscCall(MatStashScatterDestroy_BTS(&mat->stash)); 5954 #endif 5955 mat->stash.first_assembly_done = PETSC_FALSE; 5956 } 5957 PetscFunctionReturn(PETSC_SUCCESS); 5958 case MAT_NO_OFF_PROC_ZERO_ROWS: 5959 mat->nooffproczerorows = flg; 5960 PetscFunctionReturn(PETSC_SUCCESS); 5961 case MAT_SPD: 5962 if (flg) { 5963 mat->spd = PETSC_BOOL3_TRUE; 5964 mat->symmetric = PETSC_BOOL3_TRUE; 5965 mat->structurally_symmetric = PETSC_BOOL3_TRUE; 5966 } else { 5967 mat->spd = PETSC_BOOL3_FALSE; 5968 } 5969 break; 5970 case MAT_SYMMETRIC: 5971 mat->symmetric = flg ? PETSC_BOOL3_TRUE : PETSC_BOOL3_FALSE; 5972 if (flg) mat->structurally_symmetric = PETSC_BOOL3_TRUE; 5973 #if !defined(PETSC_USE_COMPLEX) 5974 mat->hermitian = flg ? PETSC_BOOL3_TRUE : PETSC_BOOL3_FALSE; 5975 #endif 5976 break; 5977 case MAT_HERMITIAN: 5978 mat->hermitian = flg ? PETSC_BOOL3_TRUE : PETSC_BOOL3_FALSE; 5979 if (flg) mat->structurally_symmetric = PETSC_BOOL3_TRUE; 5980 #if !defined(PETSC_USE_COMPLEX) 5981 mat->symmetric = flg ? PETSC_BOOL3_TRUE : PETSC_BOOL3_FALSE; 5982 #endif 5983 break; 5984 case MAT_STRUCTURALLY_SYMMETRIC: 5985 mat->structurally_symmetric = flg ? PETSC_BOOL3_TRUE : PETSC_BOOL3_FALSE; 5986 break; 5987 case MAT_SYMMETRY_ETERNAL: 5988 PetscCheck(mat->symmetric != PETSC_BOOL3_UNKNOWN, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Cannot set MAT_SYMMETRY_ETERNAL without first setting MAT_SYMMETRIC to true or false"); 5989 mat->symmetry_eternal = flg; 5990 if (flg) mat->structural_symmetry_eternal = PETSC_TRUE; 5991 break; 5992 case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 5993 PetscCheck(mat->structurally_symmetric != PETSC_BOOL3_UNKNOWN, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Cannot set MAT_STRUCTURAL_SYMMETRY_ETERNAL without first setting MAT_STRUCTURALLY_SYMMETRIC to true or false"); 5994 mat->structural_symmetry_eternal = flg; 5995 break; 5996 case MAT_SPD_ETERNAL: 5997 PetscCheck(mat->spd != PETSC_BOOL3_UNKNOWN, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Cannot set MAT_SPD_ETERNAL without first setting MAT_SPD to true or false"); 5998 mat->spd_eternal = flg; 5999 if (flg) { 6000 mat->structural_symmetry_eternal = PETSC_TRUE; 6001 mat->symmetry_eternal = PETSC_TRUE; 6002 } 6003 break; 6004 case MAT_STRUCTURE_ONLY: 6005 mat->structure_only = flg; 6006 break; 6007 case MAT_SORTED_FULL: 6008 mat->sortedfull = flg; 6009 break; 6010 default: 6011 break; 6012 } 6013 PetscTryTypeMethod(mat, setoption, op, flg); 6014 PetscFunctionReturn(PETSC_SUCCESS); 6015 } 6016 6017 /*@ 6018 MatGetOption - Gets a parameter option that has been set for a matrix. 6019 6020 Logically Collective 6021 6022 Input Parameters: 6023 + mat - the matrix 6024 - op - the option, this only responds to certain options, check the code for which ones 6025 6026 Output Parameter: 6027 . flg - turn the option on (`PETSC_TRUE`) or off (`PETSC_FALSE`) 6028 6029 Level: intermediate 6030 6031 Notes: 6032 Can only be called after `MatSetSizes()` and `MatSetType()` have been set. 6033 6034 Certain option values may be unknown, for those use the routines `MatIsSymmetric()`, `MatIsHermitian()`, `MatIsStructurallySymmetric()`, or 6035 `MatIsSymmetricKnown()`, `MatIsHermitianKnown()`, `MatIsStructurallySymmetricKnown()` 6036 6037 .seealso: [](ch_matrices), `Mat`, `MatOption`, `MatSetOption()`, `MatIsSymmetric()`, `MatIsHermitian()`, `MatIsStructurallySymmetric()`, 6038 `MatIsSymmetricKnown()`, `MatIsHermitianKnown()`, `MatIsStructurallySymmetricKnown()` 6039 @*/ 6040 PetscErrorCode MatGetOption(Mat mat, MatOption op, PetscBool *flg) 6041 { 6042 PetscFunctionBegin; 6043 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 6044 PetscValidType(mat, 1); 6045 6046 PetscCheck(((int)op) > MAT_OPTION_MIN && ((int)op) < MAT_OPTION_MAX, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_OUTOFRANGE, "Options %d is out of range", (int)op); 6047 PetscCheck(((PetscObject)mat)->type_name, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_TYPENOTSET, "Cannot get options until type and size have been set, see MatSetType() and MatSetSizes()"); 6048 6049 switch (op) { 6050 case MAT_NO_OFF_PROC_ENTRIES: 6051 *flg = mat->nooffprocentries; 6052 break; 6053 case MAT_NO_OFF_PROC_ZERO_ROWS: 6054 *flg = mat->nooffproczerorows; 6055 break; 6056 case MAT_SYMMETRIC: 6057 SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "Use MatIsSymmetric() or MatIsSymmetricKnown()"); 6058 break; 6059 case MAT_HERMITIAN: 6060 SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "Use MatIsHermitian() or MatIsHermitianKnown()"); 6061 break; 6062 case MAT_STRUCTURALLY_SYMMETRIC: 6063 SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "Use MatIsStructurallySymmetric() or MatIsStructurallySymmetricKnown()"); 6064 break; 6065 case MAT_SPD: 6066 SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "Use MatIsSPDKnown()"); 6067 break; 6068 case MAT_SYMMETRY_ETERNAL: 6069 *flg = mat->symmetry_eternal; 6070 break; 6071 case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 6072 *flg = mat->symmetry_eternal; 6073 break; 6074 default: 6075 break; 6076 } 6077 PetscFunctionReturn(PETSC_SUCCESS); 6078 } 6079 6080 /*@ 6081 MatZeroEntries - Zeros all entries of a matrix. For sparse matrices 6082 this routine retains the old nonzero structure. 6083 6084 Logically Collective 6085 6086 Input Parameter: 6087 . mat - the matrix 6088 6089 Level: intermediate 6090 6091 Note: 6092 If the matrix was not preallocated then a default, likely poor preallocation will be set in the matrix, so this should be called after the preallocation phase. 6093 See the Performance chapter of the users manual for information on preallocating matrices. 6094 6095 .seealso: [](ch_matrices), `Mat`, `MatZeroRows()`, `MatZeroRowsColumns()` 6096 @*/ 6097 PetscErrorCode MatZeroEntries(Mat mat) 6098 { 6099 PetscFunctionBegin; 6100 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 6101 PetscValidType(mat, 1); 6102 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 6103 PetscCheck(mat->insertmode == NOT_SET_VALUES, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for matrices where you have set values but not yet assembled"); 6104 MatCheckPreallocated(mat, 1); 6105 6106 PetscCall(PetscLogEventBegin(MAT_ZeroEntries, mat, 0, 0, 0)); 6107 PetscUseTypeMethod(mat, zeroentries); 6108 PetscCall(PetscLogEventEnd(MAT_ZeroEntries, mat, 0, 0, 0)); 6109 PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 6110 PetscFunctionReturn(PETSC_SUCCESS); 6111 } 6112 6113 /*@ 6114 MatZeroRowsColumns - Zeros all entries (except possibly the main diagonal) 6115 of a set of rows and columns of a matrix. 6116 6117 Collective 6118 6119 Input Parameters: 6120 + mat - the matrix 6121 . numRows - the number of rows/columns to zero 6122 . rows - the global row indices 6123 . diag - value put in the diagonal of the eliminated rows 6124 . x - optional vector of the solution for zeroed rows (other entries in vector are not used), these must be set before this call 6125 - b - optional vector of the right hand side, that will be adjusted by provided solution entries 6126 6127 Level: intermediate 6128 6129 Notes: 6130 This routine, along with `MatZeroRows()`, is typically used to eliminate known Dirichlet boundary conditions from a linear system. 6131 6132 For each zeroed row, the value of the corresponding `b` is set to diag times the value of the corresponding `x`. 6133 The other entries of `b` will be adjusted by the known values of `x` times the corresponding matrix entries in the columns that are being eliminated 6134 6135 If the resulting linear system is to be solved with `KSP` then one can (but does not have to) call `KSPSetInitialGuessNonzero()` to allow the 6136 Krylov method to take advantage of the known solution on the zeroed rows. 6137 6138 For the parallel case, all processes that share the matrix (i.e., 6139 those in the communicator used for matrix creation) MUST call this 6140 routine, regardless of whether any rows being zeroed are owned by 6141 them. 6142 6143 Unlike `MatZeroRows()` this does not change the nonzero structure of the matrix, it merely zeros those entries in the matrix. 6144 6145 Each processor can indicate any rows in the entire matrix to be zeroed (i.e. each process does NOT have to 6146 list only rows local to itself). 6147 6148 The option `MAT_NO_OFF_PROC_ZERO_ROWS` does not apply to this routine. 6149 6150 .seealso: [](ch_matrices), `Mat`, `MatZeroRowsIS()`, `MatZeroRows()`, `MatZeroRowsLocalIS()`, `MatZeroRowsStencil()`, `MatZeroEntries()`, `MatZeroRowsLocal()`, `MatSetOption()`, 6151 `MatZeroRowsColumnsLocal()`, `MatZeroRowsColumnsLocalIS()`, `MatZeroRowsColumnsIS()`, `MatZeroRowsColumnsStencil()` 6152 @*/ 6153 PetscErrorCode MatZeroRowsColumns(Mat mat, PetscInt numRows, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 6154 { 6155 PetscFunctionBegin; 6156 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 6157 PetscValidType(mat, 1); 6158 if (numRows) PetscAssertPointer(rows, 3); 6159 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 6160 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 6161 MatCheckPreallocated(mat, 1); 6162 6163 PetscUseTypeMethod(mat, zerorowscolumns, numRows, rows, diag, x, b); 6164 PetscCall(MatViewFromOptions(mat, NULL, "-mat_view")); 6165 PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 6166 PetscFunctionReturn(PETSC_SUCCESS); 6167 } 6168 6169 /*@ 6170 MatZeroRowsColumnsIS - Zeros all entries (except possibly the main diagonal) 6171 of a set of rows and columns of a matrix. 6172 6173 Collective 6174 6175 Input Parameters: 6176 + mat - the matrix 6177 . is - the rows to zero 6178 . diag - value put in all diagonals of eliminated rows (0.0 will even eliminate diagonal entry) 6179 . x - optional vector of solutions for zeroed rows (other entries in vector are not used) 6180 - b - optional vector of right hand side, that will be adjusted by provided solution 6181 6182 Level: intermediate 6183 6184 Note: 6185 See `MatZeroRowsColumns()` for details on how this routine operates. 6186 6187 .seealso: [](ch_matrices), `Mat`, `MatZeroRowsIS()`, `MatZeroRowsColumns()`, `MatZeroRowsLocalIS()`, `MatZeroRowsStencil()`, `MatZeroEntries()`, `MatZeroRowsLocal()`, `MatSetOption()`, 6188 `MatZeroRowsColumnsLocal()`, `MatZeroRowsColumnsLocalIS()`, `MatZeroRows()`, `MatZeroRowsColumnsStencil()` 6189 @*/ 6190 PetscErrorCode MatZeroRowsColumnsIS(Mat mat, IS is, PetscScalar diag, Vec x, Vec b) 6191 { 6192 PetscInt numRows; 6193 const PetscInt *rows; 6194 6195 PetscFunctionBegin; 6196 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 6197 PetscValidHeaderSpecific(is, IS_CLASSID, 2); 6198 PetscValidType(mat, 1); 6199 PetscValidType(is, 2); 6200 PetscCall(ISGetLocalSize(is, &numRows)); 6201 PetscCall(ISGetIndices(is, &rows)); 6202 PetscCall(MatZeroRowsColumns(mat, numRows, rows, diag, x, b)); 6203 PetscCall(ISRestoreIndices(is, &rows)); 6204 PetscFunctionReturn(PETSC_SUCCESS); 6205 } 6206 6207 /*@ 6208 MatZeroRows - Zeros all entries (except possibly the main diagonal) 6209 of a set of rows of a matrix. 6210 6211 Collective 6212 6213 Input Parameters: 6214 + mat - the matrix 6215 . numRows - the number of rows to zero 6216 . rows - the global row indices 6217 . diag - value put in the diagonal of the zeroed rows 6218 . x - optional vector of solutions for zeroed rows (other entries in vector are not used), these must be set before this call 6219 - b - optional vector of right hand side, that will be adjusted by provided solution entries 6220 6221 Level: intermediate 6222 6223 Notes: 6224 This routine, along with `MatZeroRowsColumns()`, is typically used to eliminate known Dirichlet boundary conditions from a linear system. 6225 6226 For each zeroed row, the value of the corresponding `b` is set to `diag` times the value of the corresponding `x`. 6227 6228 If the resulting linear system is to be solved with `KSP` then one can (but does not have to) call `KSPSetInitialGuessNonzero()` to allow the 6229 Krylov method to take advantage of the known solution on the zeroed rows. 6230 6231 May be followed by using a `PC` of type `PCREDISTRIBUTE` to solve the reduced problem (`PCDISTRIBUTE` completely eliminates the zeroed rows and their corresponding columns) 6232 from the matrix. 6233 6234 Unlike `MatZeroRowsColumns()` for the `MATAIJ` and `MATBAIJ` matrix formats this removes the old nonzero structure, from the eliminated rows of the matrix 6235 but does not release memory. Because of this removal matrix-vector products with the adjusted matrix will be a bit faster. For the dense and block diagonal 6236 formats this does not alter the nonzero structure. 6237 6238 If the option `MatSetOption`(mat,`MAT_KEEP_NONZERO_PATTERN`,`PETSC_TRUE`) the nonzero structure 6239 of the matrix is not changed the values are 6240 merely zeroed. 6241 6242 The user can set a value in the diagonal entry (or for the `MATAIJ` format 6243 formats can optionally remove the main diagonal entry from the 6244 nonzero structure as well, by passing 0.0 as the final argument). 6245 6246 For the parallel case, all processes that share the matrix (i.e., 6247 those in the communicator used for matrix creation) MUST call this 6248 routine, regardless of whether any rows being zeroed are owned by 6249 them. 6250 6251 Each processor can indicate any rows in the entire matrix to be zeroed (i.e. each process does NOT have to 6252 list only rows local to itself). 6253 6254 You can call `MatSetOption`(mat,`MAT_NO_OFF_PROC_ZERO_ROWS`,`PETSC_TRUE`) if each process indicates only rows it 6255 owns that are to be zeroed. This saves a global synchronization in the implementation. 6256 6257 .seealso: [](ch_matrices), `Mat`, `MatZeroRowsIS()`, `MatZeroRowsColumns()`, `MatZeroRowsLocalIS()`, `MatZeroRowsStencil()`, `MatZeroEntries()`, `MatZeroRowsLocal()`, `MatSetOption()`, 6258 `MatZeroRowsColumnsLocal()`, `MatZeroRowsColumnsLocalIS()`, `MatZeroRowsColumnsIS()`, `MatZeroRowsColumnsStencil()`, `PCREDISTRIBUTE` 6259 @*/ 6260 PetscErrorCode MatZeroRows(Mat mat, PetscInt numRows, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 6261 { 6262 PetscFunctionBegin; 6263 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 6264 PetscValidType(mat, 1); 6265 if (numRows) PetscAssertPointer(rows, 3); 6266 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 6267 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 6268 MatCheckPreallocated(mat, 1); 6269 6270 PetscUseTypeMethod(mat, zerorows, numRows, rows, diag, x, b); 6271 PetscCall(MatViewFromOptions(mat, NULL, "-mat_view")); 6272 PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 6273 PetscFunctionReturn(PETSC_SUCCESS); 6274 } 6275 6276 /*@ 6277 MatZeroRowsIS - Zeros all entries (except possibly the main diagonal) 6278 of a set of rows of a matrix. 6279 6280 Collective 6281 6282 Input Parameters: 6283 + mat - the matrix 6284 . is - index set of rows to remove (if `NULL` then no row is removed) 6285 . diag - value put in all diagonals of eliminated rows 6286 . x - optional vector of solutions for zeroed rows (other entries in vector are not used) 6287 - b - optional vector of right hand side, that will be adjusted by provided solution 6288 6289 Level: intermediate 6290 6291 Note: 6292 See `MatZeroRows()` for details on how this routine operates. 6293 6294 .seealso: [](ch_matrices), `Mat`, `MatZeroRows()`, `MatZeroRowsColumns()`, `MatZeroRowsLocalIS()`, `MatZeroRowsStencil()`, `MatZeroEntries()`, `MatZeroRowsLocal()`, `MatSetOption()`, 6295 `MatZeroRowsColumnsLocal()`, `MatZeroRowsColumnsLocalIS()`, `MatZeroRowsColumnsIS()`, `MatZeroRowsColumnsStencil()` 6296 @*/ 6297 PetscErrorCode MatZeroRowsIS(Mat mat, IS is, PetscScalar diag, Vec x, Vec b) 6298 { 6299 PetscInt numRows = 0; 6300 const PetscInt *rows = NULL; 6301 6302 PetscFunctionBegin; 6303 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 6304 PetscValidType(mat, 1); 6305 if (is) { 6306 PetscValidHeaderSpecific(is, IS_CLASSID, 2); 6307 PetscCall(ISGetLocalSize(is, &numRows)); 6308 PetscCall(ISGetIndices(is, &rows)); 6309 } 6310 PetscCall(MatZeroRows(mat, numRows, rows, diag, x, b)); 6311 if (is) PetscCall(ISRestoreIndices(is, &rows)); 6312 PetscFunctionReturn(PETSC_SUCCESS); 6313 } 6314 6315 /*@ 6316 MatZeroRowsStencil - Zeros all entries (except possibly the main diagonal) 6317 of a set of rows of a matrix. These rows must be local to the process. 6318 6319 Collective 6320 6321 Input Parameters: 6322 + mat - the matrix 6323 . numRows - the number of rows to remove 6324 . rows - the grid coordinates (and component number when dof > 1) for matrix rows 6325 . diag - value put in all diagonals of eliminated rows (0.0 will even eliminate diagonal entry) 6326 . x - optional vector of solutions for zeroed rows (other entries in vector are not used) 6327 - b - optional vector of right hand side, that will be adjusted by provided solution 6328 6329 Level: intermediate 6330 6331 Notes: 6332 See `MatZeroRows()` for details on how this routine operates. 6333 6334 The grid coordinates are across the entire grid, not just the local portion 6335 6336 For periodic boundary conditions use negative indices for values to the left (below 0; that are to be 6337 obtained by wrapping values from right edge). For values to the right of the last entry using that index plus one 6338 etc to obtain values that obtained by wrapping the values from the left edge. This does not work for anything but the 6339 `DM_BOUNDARY_PERIODIC` boundary type. 6340 6341 For indices that don't mean anything for your case (like the k index when working in 2d) or the c index when you have 6342 a single value per point) you can skip filling those indices. 6343 6344 Fortran Note: 6345 `idxm` and `idxn` should be declared as 6346 $ MatStencil idxm(4, m) 6347 and the values inserted using 6348 .vb 6349 idxm(MatStencil_i, 1) = i 6350 idxm(MatStencil_j, 1) = j 6351 idxm(MatStencil_k, 1) = k 6352 idxm(MatStencil_c, 1) = c 6353 etc 6354 .ve 6355 6356 .seealso: [](ch_matrices), `Mat`, `MatZeroRowsIS()`, `MatZeroRowsColumns()`, `MatZeroRowsLocalIS()`, `MatZeroRowsl()`, `MatZeroEntries()`, `MatZeroRowsLocal()`, `MatSetOption()`, 6357 `MatZeroRowsColumnsLocal()`, `MatZeroRowsColumnsLocalIS()`, `MatZeroRowsColumnsIS()`, `MatZeroRowsColumnsStencil()` 6358 @*/ 6359 PetscErrorCode MatZeroRowsStencil(Mat mat, PetscInt numRows, const MatStencil rows[], PetscScalar diag, Vec x, Vec b) 6360 { 6361 PetscInt dim = mat->stencil.dim; 6362 PetscInt sdim = dim - (1 - (PetscInt)mat->stencil.noc); 6363 PetscInt *dims = mat->stencil.dims + 1; 6364 PetscInt *starts = mat->stencil.starts; 6365 PetscInt *dxm = (PetscInt *)rows; 6366 PetscInt *jdxm, i, j, tmp, numNewRows = 0; 6367 6368 PetscFunctionBegin; 6369 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 6370 PetscValidType(mat, 1); 6371 if (numRows) PetscAssertPointer(rows, 3); 6372 6373 PetscCall(PetscMalloc1(numRows, &jdxm)); 6374 for (i = 0; i < numRows; ++i) { 6375 /* Skip unused dimensions (they are ordered k, j, i, c) */ 6376 for (j = 0; j < 3 - sdim; ++j) dxm++; 6377 /* Local index in X dir */ 6378 tmp = *dxm++ - starts[0]; 6379 /* Loop over remaining dimensions */ 6380 for (j = 0; j < dim - 1; ++j) { 6381 /* If nonlocal, set index to be negative */ 6382 if ((*dxm++ - starts[j + 1]) < 0 || tmp < 0) tmp = PETSC_MIN_INT; 6383 /* Update local index */ 6384 else tmp = tmp * dims[j] + *(dxm - 1) - starts[j + 1]; 6385 } 6386 /* Skip component slot if necessary */ 6387 if (mat->stencil.noc) dxm++; 6388 /* Local row number */ 6389 if (tmp >= 0) jdxm[numNewRows++] = tmp; 6390 } 6391 PetscCall(MatZeroRowsLocal(mat, numNewRows, jdxm, diag, x, b)); 6392 PetscCall(PetscFree(jdxm)); 6393 PetscFunctionReturn(PETSC_SUCCESS); 6394 } 6395 6396 /*@ 6397 MatZeroRowsColumnsStencil - Zeros all row and column entries (except possibly the main diagonal) 6398 of a set of rows and columns of a matrix. 6399 6400 Collective 6401 6402 Input Parameters: 6403 + mat - the matrix 6404 . numRows - the number of rows/columns to remove 6405 . rows - the grid coordinates (and component number when dof > 1) for matrix rows 6406 . diag - value put in all diagonals of eliminated rows (0.0 will even eliminate diagonal entry) 6407 . x - optional vector of solutions for zeroed rows (other entries in vector are not used) 6408 - b - optional vector of right hand side, that will be adjusted by provided solution 6409 6410 Level: intermediate 6411 6412 Notes: 6413 See `MatZeroRowsColumns()` for details on how this routine operates. 6414 6415 The grid coordinates are across the entire grid, not just the local portion 6416 6417 For periodic boundary conditions use negative indices for values to the left (below 0; that are to be 6418 obtained by wrapping values from right edge). For values to the right of the last entry using that index plus one 6419 etc to obtain values that obtained by wrapping the values from the left edge. This does not work for anything but the 6420 `DM_BOUNDARY_PERIODIC` boundary type. 6421 6422 For indices that don't mean anything for your case (like the k index when working in 2d) or the c index when you have 6423 a single value per point) you can skip filling those indices. 6424 6425 Fortran Note: 6426 `idxm` and `idxn` should be declared as 6427 $ MatStencil idxm(4, m) 6428 and the values inserted using 6429 .vb 6430 idxm(MatStencil_i, 1) = i 6431 idxm(MatStencil_j, 1) = j 6432 idxm(MatStencil_k, 1) = k 6433 idxm(MatStencil_c, 1) = c 6434 etc 6435 .ve 6436 6437 .seealso: [](ch_matrices), `Mat`, `MatZeroRowsIS()`, `MatZeroRowsColumns()`, `MatZeroRowsLocalIS()`, `MatZeroRowsStencil()`, `MatZeroEntries()`, `MatZeroRowsLocal()`, `MatSetOption()`, 6438 `MatZeroRowsColumnsLocal()`, `MatZeroRowsColumnsLocalIS()`, `MatZeroRowsColumnsIS()`, `MatZeroRows()` 6439 @*/ 6440 PetscErrorCode MatZeroRowsColumnsStencil(Mat mat, PetscInt numRows, const MatStencil rows[], PetscScalar diag, Vec x, Vec b) 6441 { 6442 PetscInt dim = mat->stencil.dim; 6443 PetscInt sdim = dim - (1 - (PetscInt)mat->stencil.noc); 6444 PetscInt *dims = mat->stencil.dims + 1; 6445 PetscInt *starts = mat->stencil.starts; 6446 PetscInt *dxm = (PetscInt *)rows; 6447 PetscInt *jdxm, i, j, tmp, numNewRows = 0; 6448 6449 PetscFunctionBegin; 6450 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 6451 PetscValidType(mat, 1); 6452 if (numRows) PetscAssertPointer(rows, 3); 6453 6454 PetscCall(PetscMalloc1(numRows, &jdxm)); 6455 for (i = 0; i < numRows; ++i) { 6456 /* Skip unused dimensions (they are ordered k, j, i, c) */ 6457 for (j = 0; j < 3 - sdim; ++j) dxm++; 6458 /* Local index in X dir */ 6459 tmp = *dxm++ - starts[0]; 6460 /* Loop over remaining dimensions */ 6461 for (j = 0; j < dim - 1; ++j) { 6462 /* If nonlocal, set index to be negative */ 6463 if ((*dxm++ - starts[j + 1]) < 0 || tmp < 0) tmp = PETSC_MIN_INT; 6464 /* Update local index */ 6465 else tmp = tmp * dims[j] + *(dxm - 1) - starts[j + 1]; 6466 } 6467 /* Skip component slot if necessary */ 6468 if (mat->stencil.noc) dxm++; 6469 /* Local row number */ 6470 if (tmp >= 0) jdxm[numNewRows++] = tmp; 6471 } 6472 PetscCall(MatZeroRowsColumnsLocal(mat, numNewRows, jdxm, diag, x, b)); 6473 PetscCall(PetscFree(jdxm)); 6474 PetscFunctionReturn(PETSC_SUCCESS); 6475 } 6476 6477 /*@C 6478 MatZeroRowsLocal - Zeros all entries (except possibly the main diagonal) 6479 of a set of rows of a matrix; using local numbering of rows. 6480 6481 Collective 6482 6483 Input Parameters: 6484 + mat - the matrix 6485 . numRows - the number of rows to remove 6486 . rows - the local row indices 6487 . diag - value put in all diagonals of eliminated rows 6488 . x - optional vector of solutions for zeroed rows (other entries in vector are not used) 6489 - b - optional vector of right hand side, that will be adjusted by provided solution 6490 6491 Level: intermediate 6492 6493 Notes: 6494 Before calling `MatZeroRowsLocal()`, the user must first set the 6495 local-to-global mapping by calling MatSetLocalToGlobalMapping(), this is often already set for matrices obtained with `DMCreateMatrix()`. 6496 6497 See `MatZeroRows()` for details on how this routine operates. 6498 6499 .seealso: [](ch_matrices), `Mat`, `MatZeroRowsIS()`, `MatZeroRowsColumns()`, `MatZeroRowsLocalIS()`, `MatZeroRowsStencil()`, `MatZeroEntries()`, `MatZeroRows()`, `MatSetOption()`, 6500 `MatZeroRowsColumnsLocal()`, `MatZeroRowsColumnsLocalIS()`, `MatZeroRowsColumnsIS()`, `MatZeroRowsColumnsStencil()` 6501 @*/ 6502 PetscErrorCode MatZeroRowsLocal(Mat mat, PetscInt numRows, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 6503 { 6504 PetscFunctionBegin; 6505 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 6506 PetscValidType(mat, 1); 6507 if (numRows) PetscAssertPointer(rows, 3); 6508 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 6509 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 6510 MatCheckPreallocated(mat, 1); 6511 6512 if (mat->ops->zerorowslocal) { 6513 PetscUseTypeMethod(mat, zerorowslocal, numRows, rows, diag, x, b); 6514 } else { 6515 IS is, newis; 6516 const PetscInt *newRows; 6517 6518 PetscCheck(mat->rmap->mapping, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Need to provide local to global mapping to matrix first"); 6519 PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numRows, rows, PETSC_COPY_VALUES, &is)); 6520 PetscCall(ISLocalToGlobalMappingApplyIS(mat->rmap->mapping, is, &newis)); 6521 PetscCall(ISGetIndices(newis, &newRows)); 6522 PetscUseTypeMethod(mat, zerorows, numRows, newRows, diag, x, b); 6523 PetscCall(ISRestoreIndices(newis, &newRows)); 6524 PetscCall(ISDestroy(&newis)); 6525 PetscCall(ISDestroy(&is)); 6526 } 6527 PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 6528 PetscFunctionReturn(PETSC_SUCCESS); 6529 } 6530 6531 /*@ 6532 MatZeroRowsLocalIS - Zeros all entries (except possibly the main diagonal) 6533 of a set of rows of a matrix; using local numbering of rows. 6534 6535 Collective 6536 6537 Input Parameters: 6538 + mat - the matrix 6539 . is - index set of rows to remove 6540 . diag - value put in all diagonals of eliminated rows 6541 . x - optional vector of solutions for zeroed rows (other entries in vector are not used) 6542 - b - optional vector of right hand side, that will be adjusted by provided solution 6543 6544 Level: intermediate 6545 6546 Notes: 6547 Before calling `MatZeroRowsLocalIS()`, the user must first set the 6548 local-to-global mapping by calling `MatSetLocalToGlobalMapping()`, this is often already set for matrices obtained with `DMCreateMatrix()`. 6549 6550 See `MatZeroRows()` for details on how this routine operates. 6551 6552 .seealso: [](ch_matrices), `Mat`, `MatZeroRowsIS()`, `MatZeroRowsColumns()`, `MatZeroRows()`, `MatZeroRowsStencil()`, `MatZeroEntries()`, `MatZeroRowsLocal()`, `MatSetOption()`, 6553 `MatZeroRowsColumnsLocal()`, `MatZeroRowsColumnsLocalIS()`, `MatZeroRowsColumnsIS()`, `MatZeroRowsColumnsStencil()` 6554 @*/ 6555 PetscErrorCode MatZeroRowsLocalIS(Mat mat, IS is, PetscScalar diag, Vec x, Vec b) 6556 { 6557 PetscInt numRows; 6558 const PetscInt *rows; 6559 6560 PetscFunctionBegin; 6561 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 6562 PetscValidType(mat, 1); 6563 PetscValidHeaderSpecific(is, IS_CLASSID, 2); 6564 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 6565 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 6566 MatCheckPreallocated(mat, 1); 6567 6568 PetscCall(ISGetLocalSize(is, &numRows)); 6569 PetscCall(ISGetIndices(is, &rows)); 6570 PetscCall(MatZeroRowsLocal(mat, numRows, rows, diag, x, b)); 6571 PetscCall(ISRestoreIndices(is, &rows)); 6572 PetscFunctionReturn(PETSC_SUCCESS); 6573 } 6574 6575 /*@ 6576 MatZeroRowsColumnsLocal - Zeros all entries (except possibly the main diagonal) 6577 of a set of rows and columns of a matrix; using local numbering of rows. 6578 6579 Collective 6580 6581 Input Parameters: 6582 + mat - the matrix 6583 . numRows - the number of rows to remove 6584 . rows - the global row indices 6585 . diag - value put in all diagonals of eliminated rows 6586 . x - optional vector of solutions for zeroed rows (other entries in vector are not used) 6587 - b - optional vector of right hand side, that will be adjusted by provided solution 6588 6589 Level: intermediate 6590 6591 Notes: 6592 Before calling `MatZeroRowsColumnsLocal()`, the user must first set the 6593 local-to-global mapping by calling `MatSetLocalToGlobalMapping()`, this is often already set for matrices obtained with `DMCreateMatrix()`. 6594 6595 See `MatZeroRowsColumns()` for details on how this routine operates. 6596 6597 .seealso: [](ch_matrices), `Mat`, `MatZeroRowsIS()`, `MatZeroRowsColumns()`, `MatZeroRowsLocalIS()`, `MatZeroRowsStencil()`, `MatZeroEntries()`, `MatZeroRowsLocal()`, `MatSetOption()`, 6598 `MatZeroRows()`, `MatZeroRowsColumnsLocalIS()`, `MatZeroRowsColumnsIS()`, `MatZeroRowsColumnsStencil()` 6599 @*/ 6600 PetscErrorCode MatZeroRowsColumnsLocal(Mat mat, PetscInt numRows, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 6601 { 6602 IS is, newis; 6603 const PetscInt *newRows; 6604 6605 PetscFunctionBegin; 6606 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 6607 PetscValidType(mat, 1); 6608 if (numRows) PetscAssertPointer(rows, 3); 6609 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 6610 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 6611 MatCheckPreallocated(mat, 1); 6612 6613 PetscCheck(mat->cmap->mapping, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Need to provide local to global mapping to matrix first"); 6614 PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numRows, rows, PETSC_COPY_VALUES, &is)); 6615 PetscCall(ISLocalToGlobalMappingApplyIS(mat->cmap->mapping, is, &newis)); 6616 PetscCall(ISGetIndices(newis, &newRows)); 6617 PetscUseTypeMethod(mat, zerorowscolumns, numRows, newRows, diag, x, b); 6618 PetscCall(ISRestoreIndices(newis, &newRows)); 6619 PetscCall(ISDestroy(&newis)); 6620 PetscCall(ISDestroy(&is)); 6621 PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 6622 PetscFunctionReturn(PETSC_SUCCESS); 6623 } 6624 6625 /*@ 6626 MatZeroRowsColumnsLocalIS - Zeros all entries (except possibly the main diagonal) 6627 of a set of rows and columns of a matrix; using local numbering of rows. 6628 6629 Collective 6630 6631 Input Parameters: 6632 + mat - the matrix 6633 . is - index set of rows to remove 6634 . diag - value put in all diagonals of eliminated rows 6635 . x - optional vector of solutions for zeroed rows (other entries in vector are not used) 6636 - b - optional vector of right hand side, that will be adjusted by provided solution 6637 6638 Level: intermediate 6639 6640 Notes: 6641 Before calling `MatZeroRowsColumnsLocalIS()`, the user must first set the 6642 local-to-global mapping by calling `MatSetLocalToGlobalMapping()`, this is often already set for matrices obtained with `DMCreateMatrix()`. 6643 6644 See `MatZeroRowsColumns()` for details on how this routine operates. 6645 6646 .seealso: [](ch_matrices), `Mat`, `MatZeroRowsIS()`, `MatZeroRowsColumns()`, `MatZeroRowsLocalIS()`, `MatZeroRowsStencil()`, `MatZeroEntries()`, `MatZeroRowsLocal()`, `MatSetOption()`, 6647 `MatZeroRowsColumnsLocal()`, `MatZeroRows()`, `MatZeroRowsColumnsIS()`, `MatZeroRowsColumnsStencil()` 6648 @*/ 6649 PetscErrorCode MatZeroRowsColumnsLocalIS(Mat mat, IS is, PetscScalar diag, Vec x, Vec b) 6650 { 6651 PetscInt numRows; 6652 const PetscInt *rows; 6653 6654 PetscFunctionBegin; 6655 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 6656 PetscValidType(mat, 1); 6657 PetscValidHeaderSpecific(is, IS_CLASSID, 2); 6658 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 6659 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 6660 MatCheckPreallocated(mat, 1); 6661 6662 PetscCall(ISGetLocalSize(is, &numRows)); 6663 PetscCall(ISGetIndices(is, &rows)); 6664 PetscCall(MatZeroRowsColumnsLocal(mat, numRows, rows, diag, x, b)); 6665 PetscCall(ISRestoreIndices(is, &rows)); 6666 PetscFunctionReturn(PETSC_SUCCESS); 6667 } 6668 6669 /*@C 6670 MatGetSize - Returns the numbers of rows and columns in a matrix. 6671 6672 Not Collective 6673 6674 Input Parameter: 6675 . mat - the matrix 6676 6677 Output Parameters: 6678 + m - the number of global rows 6679 - n - the number of global columns 6680 6681 Level: beginner 6682 6683 Note: 6684 Both output parameters can be `NULL` on input. 6685 6686 .seealso: [](ch_matrices), `Mat`, `MatSetSizes()`, `MatGetLocalSize()` 6687 @*/ 6688 PetscErrorCode MatGetSize(Mat mat, PetscInt *m, PetscInt *n) 6689 { 6690 PetscFunctionBegin; 6691 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 6692 if (m) *m = mat->rmap->N; 6693 if (n) *n = mat->cmap->N; 6694 PetscFunctionReturn(PETSC_SUCCESS); 6695 } 6696 6697 /*@C 6698 MatGetLocalSize - For most matrix formats, excluding `MATELEMENTAL` and `MATSCALAPACK`, Returns the number of local rows and local columns 6699 of a matrix. For all matrices this is the local size of the left and right vectors as returned by `MatCreateVecs()`. 6700 6701 Not Collective 6702 6703 Input Parameter: 6704 . mat - the matrix 6705 6706 Output Parameters: 6707 + m - the number of local rows, use `NULL` to not obtain this value 6708 - n - the number of local columns, use `NULL` to not obtain this value 6709 6710 Level: beginner 6711 6712 .seealso: [](ch_matrices), `Mat`, `MatSetSizes()`, `MatGetSize()` 6713 @*/ 6714 PetscErrorCode MatGetLocalSize(Mat mat, PetscInt *m, PetscInt *n) 6715 { 6716 PetscFunctionBegin; 6717 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 6718 if (m) PetscAssertPointer(m, 2); 6719 if (n) PetscAssertPointer(n, 3); 6720 if (m) *m = mat->rmap->n; 6721 if (n) *n = mat->cmap->n; 6722 PetscFunctionReturn(PETSC_SUCCESS); 6723 } 6724 6725 /*@C 6726 MatGetOwnershipRangeColumn - Returns the range of matrix columns associated with rows of a 6727 vector one multiplies this matrix by that are owned by this processor. 6728 6729 Not Collective, unless matrix has not been allocated, then collective 6730 6731 Input Parameter: 6732 . mat - the matrix 6733 6734 Output Parameters: 6735 + m - the global index of the first local column, use `NULL` to not obtain this value 6736 - n - one more than the global index of the last local column, use `NULL` to not obtain this value 6737 6738 Level: developer 6739 6740 Note: 6741 Returns the columns of the "diagonal block" for most sparse matrix formats. See [Matrix 6742 Layouts](sec_matlayout) for details on matrix layouts. 6743 6744 .seealso: [](ch_matrices), `Mat`, `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangesColumn()`, `PetscLayout` 6745 @*/ 6746 PetscErrorCode MatGetOwnershipRangeColumn(Mat mat, PetscInt *m, PetscInt *n) 6747 { 6748 PetscFunctionBegin; 6749 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 6750 PetscValidType(mat, 1); 6751 if (m) PetscAssertPointer(m, 2); 6752 if (n) PetscAssertPointer(n, 3); 6753 MatCheckPreallocated(mat, 1); 6754 if (m) *m = mat->cmap->rstart; 6755 if (n) *n = mat->cmap->rend; 6756 PetscFunctionReturn(PETSC_SUCCESS); 6757 } 6758 6759 /*@C 6760 MatGetOwnershipRange - For matrices that own values by row, excludes `MATELEMENTAL` and `MATSCALAPACK`, returns the range of matrix rows owned by 6761 this MPI process. 6762 6763 Not Collective 6764 6765 Input Parameter: 6766 . mat - the matrix 6767 6768 Output Parameters: 6769 + m - the global index of the first local row, use `NULL` to not obtain this value 6770 - n - one more than the global index of the last local row, use `NULL` to not obtain this value 6771 6772 Level: beginner 6773 6774 Note: 6775 For all matrices it returns the range of matrix rows associated with rows of a vector that 6776 would contain the result of a matrix vector product with this matrix. See [Matrix 6777 Layouts](sec_matlayout) for details on matrix layouts. 6778 6779 .seealso: [](ch_matrices), `Mat`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, `MatGetOwnershipRangesColumn()`, `PetscSplitOwnership()`, `PetscSplitOwnershipBlock()`, 6780 `PetscLayout` 6781 @*/ 6782 PetscErrorCode MatGetOwnershipRange(Mat mat, PetscInt *m, PetscInt *n) 6783 { 6784 PetscFunctionBegin; 6785 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 6786 PetscValidType(mat, 1); 6787 if (m) PetscAssertPointer(m, 2); 6788 if (n) PetscAssertPointer(n, 3); 6789 MatCheckPreallocated(mat, 1); 6790 if (m) *m = mat->rmap->rstart; 6791 if (n) *n = mat->rmap->rend; 6792 PetscFunctionReturn(PETSC_SUCCESS); 6793 } 6794 6795 /*@C 6796 MatGetOwnershipRanges - For matrices that own values by row, excludes `MATELEMENTAL` and 6797 `MATSCALAPACK`, returns the range of matrix rows owned by each process. 6798 6799 Not Collective, unless matrix has not been allocated 6800 6801 Input Parameter: 6802 . mat - the matrix 6803 6804 Output Parameter: 6805 . ranges - start of each processors portion plus one more than the total length at the end 6806 6807 Level: beginner 6808 6809 Note: 6810 For all matrices it returns the ranges of matrix rows associated with rows of a vector that 6811 would contain the result of a matrix vector product with this matrix. See [Matrix 6812 Layouts](sec_matlayout) for details on matrix layouts. 6813 6814 .seealso: [](ch_matrices), `Mat`, `MatGetOwnershipRange()`, `MatGetOwnershipRangeColumn()`, `MatGetOwnershipRangesColumn()`, `PetscLayout` 6815 @*/ 6816 PetscErrorCode MatGetOwnershipRanges(Mat mat, const PetscInt **ranges) 6817 { 6818 PetscFunctionBegin; 6819 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 6820 PetscValidType(mat, 1); 6821 MatCheckPreallocated(mat, 1); 6822 PetscCall(PetscLayoutGetRanges(mat->rmap, ranges)); 6823 PetscFunctionReturn(PETSC_SUCCESS); 6824 } 6825 6826 /*@C 6827 MatGetOwnershipRangesColumn - Returns the ranges of matrix columns associated with rows of a 6828 vector one multiplies this vector by that are owned by each processor. 6829 6830 Not Collective, unless matrix has not been allocated 6831 6832 Input Parameter: 6833 . mat - the matrix 6834 6835 Output Parameter: 6836 . ranges - start of each processors portion plus one more than the total length at the end 6837 6838 Level: beginner 6839 6840 Note: 6841 Returns the columns of the "diagonal blocks", for most sparse matrix formats. See [Matrix 6842 Layouts](sec_matlayout) for details on matrix layouts. 6843 6844 .seealso: [](ch_matrices), `Mat`, `MatGetOwnershipRange()`, `MatGetOwnershipRangeColumn()`, `MatGetOwnershipRanges()` 6845 @*/ 6846 PetscErrorCode MatGetOwnershipRangesColumn(Mat mat, const PetscInt **ranges) 6847 { 6848 PetscFunctionBegin; 6849 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 6850 PetscValidType(mat, 1); 6851 MatCheckPreallocated(mat, 1); 6852 PetscCall(PetscLayoutGetRanges(mat->cmap, ranges)); 6853 PetscFunctionReturn(PETSC_SUCCESS); 6854 } 6855 6856 /*@C 6857 MatGetOwnershipIS - Get row and column ownership of a matrices' values as index sets. 6858 6859 Not Collective 6860 6861 Input Parameter: 6862 . A - matrix 6863 6864 Output Parameters: 6865 + rows - rows in which this process owns elements, , use `NULL` to not obtain this value 6866 - cols - columns in which this process owns elements, use `NULL` to not obtain this value 6867 6868 Level: intermediate 6869 6870 Note: 6871 For most matrices, excluding `MATELEMENTAL` and `MATSCALAPACK`, this corresponds to values 6872 returned by `MatGetOwnershipRange()`, `MatGetOwnershipRangeColumn()`. For `MATELEMENTAL` and 6873 `MATSCALAPACK` the ownership is more complicated. See [Matrix Layouts](sec_matlayout) for 6874 details on matrix layouts. 6875 6876 .seealso: [](ch_matrices), `Mat`, `MatGetOwnershipRange()`, `MatGetOwnershipRangeColumn()`, `MatSetValues()`, ``MATELEMENTAL``, ``MATSCALAPACK`` 6877 @*/ 6878 PetscErrorCode MatGetOwnershipIS(Mat A, IS *rows, IS *cols) 6879 { 6880 PetscErrorCode (*f)(Mat, IS *, IS *); 6881 6882 PetscFunctionBegin; 6883 MatCheckPreallocated(A, 1); 6884 PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatGetOwnershipIS_C", &f)); 6885 if (f) { 6886 PetscCall((*f)(A, rows, cols)); 6887 } else { /* Create a standard row-based partition, each process is responsible for ALL columns in their row block */ 6888 if (rows) PetscCall(ISCreateStride(PETSC_COMM_SELF, A->rmap->n, A->rmap->rstart, 1, rows)); 6889 if (cols) PetscCall(ISCreateStride(PETSC_COMM_SELF, A->cmap->N, 0, 1, cols)); 6890 } 6891 PetscFunctionReturn(PETSC_SUCCESS); 6892 } 6893 6894 /*@C 6895 MatILUFactorSymbolic - Performs symbolic ILU factorization of a matrix obtained with `MatGetFactor()` 6896 Uses levels of fill only, not drop tolerance. Use `MatLUFactorNumeric()` 6897 to complete the factorization. 6898 6899 Collective 6900 6901 Input Parameters: 6902 + fact - the factorized matrix obtained with `MatGetFactor()` 6903 . mat - the matrix 6904 . row - row permutation 6905 . col - column permutation 6906 - info - structure containing 6907 .vb 6908 levels - number of levels of fill. 6909 expected fill - as ratio of original fill. 6910 1 or 0 - indicating force fill on diagonal (improves robustness for matrices 6911 missing diagonal entries) 6912 .ve 6913 6914 Level: developer 6915 6916 Notes: 6917 See [Matrix Factorization](sec_matfactor) for additional information. 6918 6919 Most users should employ the `KSP` interface for linear solvers 6920 instead of working directly with matrix algebra routines such as this. 6921 See, e.g., `KSPCreate()`. 6922 6923 Uses the definition of level of fill as in Y. Saad, {cite}`saad2003` 6924 6925 Developer Note: 6926 The Fortran interface is not autogenerated as the 6927 interface definition cannot be generated correctly [due to `MatFactorInfo`] 6928 6929 .seealso: [](ch_matrices), `Mat`, [Matrix Factorization](sec_matfactor), `MatGetFactor()`, `MatLUFactorSymbolic()`, `MatLUFactorNumeric()`, `MatCholeskyFactor()` 6930 `MatGetOrdering()`, `MatFactorInfo` 6931 @*/ 6932 PetscErrorCode MatILUFactorSymbolic(Mat fact, Mat mat, IS row, IS col, const MatFactorInfo *info) 6933 { 6934 PetscFunctionBegin; 6935 PetscValidHeaderSpecific(mat, MAT_CLASSID, 2); 6936 PetscValidType(mat, 2); 6937 if (row) PetscValidHeaderSpecific(row, IS_CLASSID, 3); 6938 if (col) PetscValidHeaderSpecific(col, IS_CLASSID, 4); 6939 PetscAssertPointer(info, 5); 6940 PetscAssertPointer(fact, 1); 6941 PetscCheck(info->levels >= 0, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_OUTOFRANGE, "Levels of fill negative %" PetscInt_FMT, (PetscInt)info->levels); 6942 PetscCheck(info->fill >= 1.0, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_OUTOFRANGE, "Expected fill less than 1.0 %g", (double)info->fill); 6943 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 6944 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 6945 MatCheckPreallocated(mat, 2); 6946 6947 if (!fact->trivialsymbolic) PetscCall(PetscLogEventBegin(MAT_ILUFactorSymbolic, mat, row, col, 0)); 6948 PetscUseTypeMethod(fact, ilufactorsymbolic, mat, row, col, info); 6949 if (!fact->trivialsymbolic) PetscCall(PetscLogEventEnd(MAT_ILUFactorSymbolic, mat, row, col, 0)); 6950 PetscFunctionReturn(PETSC_SUCCESS); 6951 } 6952 6953 /*@C 6954 MatICCFactorSymbolic - Performs symbolic incomplete 6955 Cholesky factorization for a symmetric matrix. Use 6956 `MatCholeskyFactorNumeric()` to complete the factorization. 6957 6958 Collective 6959 6960 Input Parameters: 6961 + fact - the factorized matrix obtained with `MatGetFactor()` 6962 . mat - the matrix to be factored 6963 . perm - row and column permutation 6964 - info - structure containing 6965 .vb 6966 levels - number of levels of fill. 6967 expected fill - as ratio of original fill. 6968 .ve 6969 6970 Level: developer 6971 6972 Notes: 6973 Most users should employ the `KSP` interface for linear solvers 6974 instead of working directly with matrix algebra routines such as this. 6975 See, e.g., `KSPCreate()`. 6976 6977 This uses the definition of level of fill as in Y. Saad {cite}`saad2003` 6978 6979 Developer Note: 6980 The Fortran interface is not autogenerated as the 6981 interface definition cannot be generated correctly [due to `MatFactorInfo`] 6982 6983 .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatCholeskyFactorNumeric()`, `MatCholeskyFactor()`, `MatFactorInfo` 6984 @*/ 6985 PetscErrorCode MatICCFactorSymbolic(Mat fact, Mat mat, IS perm, const MatFactorInfo *info) 6986 { 6987 PetscFunctionBegin; 6988 PetscValidHeaderSpecific(mat, MAT_CLASSID, 2); 6989 PetscValidType(mat, 2); 6990 if (perm) PetscValidHeaderSpecific(perm, IS_CLASSID, 3); 6991 PetscAssertPointer(info, 4); 6992 PetscAssertPointer(fact, 1); 6993 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 6994 PetscCheck(info->levels >= 0, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_OUTOFRANGE, "Levels negative %" PetscInt_FMT, (PetscInt)info->levels); 6995 PetscCheck(info->fill >= 1.0, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_OUTOFRANGE, "Expected fill less than 1.0 %g", (double)info->fill); 6996 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 6997 MatCheckPreallocated(mat, 2); 6998 6999 if (!fact->trivialsymbolic) PetscCall(PetscLogEventBegin(MAT_ICCFactorSymbolic, mat, perm, 0, 0)); 7000 PetscUseTypeMethod(fact, iccfactorsymbolic, mat, perm, info); 7001 if (!fact->trivialsymbolic) PetscCall(PetscLogEventEnd(MAT_ICCFactorSymbolic, mat, perm, 0, 0)); 7002 PetscFunctionReturn(PETSC_SUCCESS); 7003 } 7004 7005 /*@C 7006 MatCreateSubMatrices - Extracts several submatrices from a matrix. If submat 7007 points to an array of valid matrices, they may be reused to store the new 7008 submatrices. 7009 7010 Collective 7011 7012 Input Parameters: 7013 + mat - the matrix 7014 . n - the number of submatrixes to be extracted (on this processor, may be zero) 7015 . irow - index set of rows to extract 7016 . icol - index set of columns to extract 7017 - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 7018 7019 Output Parameter: 7020 . submat - the array of submatrices 7021 7022 Level: advanced 7023 7024 Notes: 7025 `MatCreateSubMatrices()` can extract ONLY sequential submatrices 7026 (from both sequential and parallel matrices). Use `MatCreateSubMatrix()` 7027 to extract a parallel submatrix. 7028 7029 Some matrix types place restrictions on the row and column 7030 indices, such as that they be sorted or that they be equal to each other. 7031 7032 The index sets may not have duplicate entries. 7033 7034 When extracting submatrices from a parallel matrix, each processor can 7035 form a different submatrix by setting the rows and columns of its 7036 individual index sets according to the local submatrix desired. 7037 7038 When finished using the submatrices, the user should destroy 7039 them with `MatDestroySubMatrices()`. 7040 7041 `MAT_REUSE_MATRIX` can only be used when the nonzero structure of the 7042 original matrix has not changed from that last call to `MatCreateSubMatrices()`. 7043 7044 This routine creates the matrices in submat; you should NOT create them before 7045 calling it. It also allocates the array of matrix pointers submat. 7046 7047 For `MATBAIJ` matrices the index sets must respect the block structure, that is if they 7048 request one row/column in a block, they must request all rows/columns that are in 7049 that block. For example, if the block size is 2 you cannot request just row 0 and 7050 column 0. 7051 7052 Fortran Note: 7053 The Fortran interface is slightly different from that given below; it 7054 requires one to pass in as `submat` a `Mat` (integer) array of size at least n+1. 7055 7056 .seealso: [](ch_matrices), `Mat`, `MatDestroySubMatrices()`, `MatCreateSubMatrix()`, `MatGetRow()`, `MatGetDiagonal()`, `MatReuse` 7057 @*/ 7058 PetscErrorCode MatCreateSubMatrices(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[]) 7059 { 7060 PetscInt i; 7061 PetscBool eq; 7062 7063 PetscFunctionBegin; 7064 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 7065 PetscValidType(mat, 1); 7066 if (n) { 7067 PetscAssertPointer(irow, 3); 7068 for (i = 0; i < n; i++) PetscValidHeaderSpecific(irow[i], IS_CLASSID, 3); 7069 PetscAssertPointer(icol, 4); 7070 for (i = 0; i < n; i++) PetscValidHeaderSpecific(icol[i], IS_CLASSID, 4); 7071 } 7072 PetscAssertPointer(submat, 6); 7073 if (n && scall == MAT_REUSE_MATRIX) { 7074 PetscAssertPointer(*submat, 6); 7075 for (i = 0; i < n; i++) PetscValidHeaderSpecific((*submat)[i], MAT_CLASSID, 6); 7076 } 7077 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 7078 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 7079 MatCheckPreallocated(mat, 1); 7080 PetscCall(PetscLogEventBegin(MAT_CreateSubMats, mat, 0, 0, 0)); 7081 PetscUseTypeMethod(mat, createsubmatrices, n, irow, icol, scall, submat); 7082 PetscCall(PetscLogEventEnd(MAT_CreateSubMats, mat, 0, 0, 0)); 7083 for (i = 0; i < n; i++) { 7084 (*submat)[i]->factortype = MAT_FACTOR_NONE; /* in case in place factorization was previously done on submatrix */ 7085 PetscCall(ISEqualUnsorted(irow[i], icol[i], &eq)); 7086 if (eq) PetscCall(MatPropagateSymmetryOptions(mat, (*submat)[i])); 7087 #if defined(PETSC_HAVE_VIENNACL) || defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 7088 if (mat->boundtocpu && mat->bindingpropagates) { 7089 PetscCall(MatBindToCPU((*submat)[i], PETSC_TRUE)); 7090 PetscCall(MatSetBindingPropagates((*submat)[i], PETSC_TRUE)); 7091 } 7092 #endif 7093 } 7094 PetscFunctionReturn(PETSC_SUCCESS); 7095 } 7096 7097 /*@C 7098 MatCreateSubMatricesMPI - Extracts MPI submatrices across a sub communicator of mat (by pairs of `IS` that may live on subcomms). 7099 7100 Collective 7101 7102 Input Parameters: 7103 + mat - the matrix 7104 . n - the number of submatrixes to be extracted 7105 . irow - index set of rows to extract 7106 . icol - index set of columns to extract 7107 - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 7108 7109 Output Parameter: 7110 . submat - the array of submatrices 7111 7112 Level: advanced 7113 7114 Note: 7115 This is used by `PCGASM` 7116 7117 .seealso: [](ch_matrices), `Mat`, `PCGASM`, `MatCreateSubMatrices()`, `MatCreateSubMatrix()`, `MatGetRow()`, `MatGetDiagonal()`, `MatReuse` 7118 @*/ 7119 PetscErrorCode MatCreateSubMatricesMPI(Mat mat, PetscInt n, const IS irow[], const IS icol[], MatReuse scall, Mat *submat[]) 7120 { 7121 PetscInt i; 7122 PetscBool eq; 7123 7124 PetscFunctionBegin; 7125 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 7126 PetscValidType(mat, 1); 7127 if (n) { 7128 PetscAssertPointer(irow, 3); 7129 PetscValidHeaderSpecific(*irow, IS_CLASSID, 3); 7130 PetscAssertPointer(icol, 4); 7131 PetscValidHeaderSpecific(*icol, IS_CLASSID, 4); 7132 } 7133 PetscAssertPointer(submat, 6); 7134 if (n && scall == MAT_REUSE_MATRIX) { 7135 PetscAssertPointer(*submat, 6); 7136 PetscValidHeaderSpecific(**submat, MAT_CLASSID, 6); 7137 } 7138 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 7139 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 7140 MatCheckPreallocated(mat, 1); 7141 7142 PetscCall(PetscLogEventBegin(MAT_CreateSubMats, mat, 0, 0, 0)); 7143 PetscUseTypeMethod(mat, createsubmatricesmpi, n, irow, icol, scall, submat); 7144 PetscCall(PetscLogEventEnd(MAT_CreateSubMats, mat, 0, 0, 0)); 7145 for (i = 0; i < n; i++) { 7146 PetscCall(ISEqualUnsorted(irow[i], icol[i], &eq)); 7147 if (eq) PetscCall(MatPropagateSymmetryOptions(mat, (*submat)[i])); 7148 } 7149 PetscFunctionReturn(PETSC_SUCCESS); 7150 } 7151 7152 /*@C 7153 MatDestroyMatrices - Destroys an array of matrices. 7154 7155 Collective 7156 7157 Input Parameters: 7158 + n - the number of local matrices 7159 - mat - the matrices (this is a pointer to the array of matrices) 7160 7161 Level: advanced 7162 7163 Note: 7164 Frees not only the matrices, but also the array that contains the matrices 7165 7166 Fortran Note: 7167 This does not free the array. 7168 7169 .seealso: [](ch_matrices), `Mat`, `MatCreateSubMatrices()` `MatDestroySubMatrices()` 7170 @*/ 7171 PetscErrorCode MatDestroyMatrices(PetscInt n, Mat *mat[]) 7172 { 7173 PetscInt i; 7174 7175 PetscFunctionBegin; 7176 if (!*mat) PetscFunctionReturn(PETSC_SUCCESS); 7177 PetscCheck(n >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to destroy negative number of matrices %" PetscInt_FMT, n); 7178 PetscAssertPointer(mat, 2); 7179 7180 for (i = 0; i < n; i++) PetscCall(MatDestroy(&(*mat)[i])); 7181 7182 /* memory is allocated even if n = 0 */ 7183 PetscCall(PetscFree(*mat)); 7184 PetscFunctionReturn(PETSC_SUCCESS); 7185 } 7186 7187 /*@C 7188 MatDestroySubMatrices - Destroys a set of matrices obtained with `MatCreateSubMatrices()`. 7189 7190 Collective 7191 7192 Input Parameters: 7193 + n - the number of local matrices 7194 - mat - the matrices (this is a pointer to the array of matrices, just to match the calling 7195 sequence of `MatCreateSubMatrices()`) 7196 7197 Level: advanced 7198 7199 Note: 7200 Frees not only the matrices, but also the array that contains the matrices 7201 7202 Fortran Note: 7203 This does not free the array. 7204 7205 .seealso: [](ch_matrices), `Mat`, `MatCreateSubMatrices()`, `MatDestroyMatrices()` 7206 @*/ 7207 PetscErrorCode MatDestroySubMatrices(PetscInt n, Mat *mat[]) 7208 { 7209 Mat mat0; 7210 7211 PetscFunctionBegin; 7212 if (!*mat) PetscFunctionReturn(PETSC_SUCCESS); 7213 /* mat[] is an array of length n+1, see MatCreateSubMatrices_xxx() */ 7214 PetscCheck(n >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Trying to destroy negative number of matrices %" PetscInt_FMT, n); 7215 PetscAssertPointer(mat, 2); 7216 7217 mat0 = (*mat)[0]; 7218 if (mat0 && mat0->ops->destroysubmatrices) { 7219 PetscCall((*mat0->ops->destroysubmatrices)(n, mat)); 7220 } else { 7221 PetscCall(MatDestroyMatrices(n, mat)); 7222 } 7223 PetscFunctionReturn(PETSC_SUCCESS); 7224 } 7225 7226 /*@C 7227 MatGetSeqNonzeroStructure - Extracts the nonzero structure from a matrix and stores it, in its entirety, on each process 7228 7229 Collective 7230 7231 Input Parameter: 7232 . mat - the matrix 7233 7234 Output Parameter: 7235 . matstruct - the sequential matrix with the nonzero structure of mat 7236 7237 Level: developer 7238 7239 .seealso: [](ch_matrices), `Mat`, `MatDestroySeqNonzeroStructure()`, `MatCreateSubMatrices()`, `MatDestroyMatrices()` 7240 @*/ 7241 PetscErrorCode MatGetSeqNonzeroStructure(Mat mat, Mat *matstruct) 7242 { 7243 PetscFunctionBegin; 7244 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 7245 PetscAssertPointer(matstruct, 2); 7246 7247 PetscValidType(mat, 1); 7248 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 7249 MatCheckPreallocated(mat, 1); 7250 7251 PetscCall(PetscLogEventBegin(MAT_GetSeqNonzeroStructure, mat, 0, 0, 0)); 7252 PetscUseTypeMethod(mat, getseqnonzerostructure, matstruct); 7253 PetscCall(PetscLogEventEnd(MAT_GetSeqNonzeroStructure, mat, 0, 0, 0)); 7254 PetscFunctionReturn(PETSC_SUCCESS); 7255 } 7256 7257 /*@C 7258 MatDestroySeqNonzeroStructure - Destroys matrix obtained with `MatGetSeqNonzeroStructure()`. 7259 7260 Collective 7261 7262 Input Parameter: 7263 . mat - the matrix (this is a pointer to the array of matrices, just to match the calling 7264 sequence of `MatGetSeqNonzeroStructure()`) 7265 7266 Level: advanced 7267 7268 Note: 7269 Frees not only the matrices, but also the array that contains the matrices 7270 7271 .seealso: [](ch_matrices), `Mat`, `MatGetSeqNonzeroStructure()` 7272 @*/ 7273 PetscErrorCode MatDestroySeqNonzeroStructure(Mat *mat) 7274 { 7275 PetscFunctionBegin; 7276 PetscAssertPointer(mat, 1); 7277 PetscCall(MatDestroy(mat)); 7278 PetscFunctionReturn(PETSC_SUCCESS); 7279 } 7280 7281 /*@ 7282 MatIncreaseOverlap - Given a set of submatrices indicated by index sets, 7283 replaces the index sets by larger ones that represent submatrices with 7284 additional overlap. 7285 7286 Collective 7287 7288 Input Parameters: 7289 + mat - the matrix 7290 . n - the number of index sets 7291 . is - the array of index sets (these index sets will changed during the call) 7292 - ov - the additional overlap requested 7293 7294 Options Database Key: 7295 . -mat_increase_overlap_scalable - use a scalable algorithm to compute the overlap (supported by MPIAIJ matrix) 7296 7297 Level: developer 7298 7299 Note: 7300 The computed overlap preserves the matrix block sizes when the blocks are square. 7301 That is: if a matrix nonzero for a given block would increase the overlap all columns associated with 7302 that block are included in the overlap regardless of whether each specific column would increase the overlap. 7303 7304 .seealso: [](ch_matrices), `Mat`, `PCASM`, `MatSetBlockSize()`, `MatIncreaseOverlapSplit()`, `MatCreateSubMatrices()` 7305 @*/ 7306 PetscErrorCode MatIncreaseOverlap(Mat mat, PetscInt n, IS is[], PetscInt ov) 7307 { 7308 PetscInt i, bs, cbs; 7309 7310 PetscFunctionBegin; 7311 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 7312 PetscValidType(mat, 1); 7313 PetscValidLogicalCollectiveInt(mat, n, 2); 7314 PetscCheck(n >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Must have one or more domains, you have %" PetscInt_FMT, n); 7315 if (n) { 7316 PetscAssertPointer(is, 3); 7317 for (i = 0; i < n; i++) PetscValidHeaderSpecific(is[i], IS_CLASSID, 3); 7318 } 7319 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 7320 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 7321 MatCheckPreallocated(mat, 1); 7322 7323 if (!ov || !n) PetscFunctionReturn(PETSC_SUCCESS); 7324 PetscCall(PetscLogEventBegin(MAT_IncreaseOverlap, mat, 0, 0, 0)); 7325 PetscUseTypeMethod(mat, increaseoverlap, n, is, ov); 7326 PetscCall(PetscLogEventEnd(MAT_IncreaseOverlap, mat, 0, 0, 0)); 7327 PetscCall(MatGetBlockSizes(mat, &bs, &cbs)); 7328 if (bs == cbs) { 7329 for (i = 0; i < n; i++) PetscCall(ISSetBlockSize(is[i], bs)); 7330 } 7331 PetscFunctionReturn(PETSC_SUCCESS); 7332 } 7333 7334 PetscErrorCode MatIncreaseOverlapSplit_Single(Mat, IS *, PetscInt); 7335 7336 /*@ 7337 MatIncreaseOverlapSplit - Given a set of submatrices indicated by index sets across 7338 a sub communicator, replaces the index sets by larger ones that represent submatrices with 7339 additional overlap. 7340 7341 Collective 7342 7343 Input Parameters: 7344 + mat - the matrix 7345 . n - the number of index sets 7346 . is - the array of index sets (these index sets will changed during the call) 7347 - ov - the additional overlap requested 7348 7349 ` Options Database Key: 7350 . -mat_increase_overlap_scalable - use a scalable algorithm to compute the overlap (supported by MPIAIJ matrix) 7351 7352 Level: developer 7353 7354 .seealso: [](ch_matrices), `Mat`, `MatCreateSubMatrices()`, `MatIncreaseOverlap()` 7355 @*/ 7356 PetscErrorCode MatIncreaseOverlapSplit(Mat mat, PetscInt n, IS is[], PetscInt ov) 7357 { 7358 PetscInt i; 7359 7360 PetscFunctionBegin; 7361 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 7362 PetscValidType(mat, 1); 7363 PetscCheck(n >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Must have one or more domains, you have %" PetscInt_FMT, n); 7364 if (n) { 7365 PetscAssertPointer(is, 3); 7366 PetscValidHeaderSpecific(*is, IS_CLASSID, 3); 7367 } 7368 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 7369 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 7370 MatCheckPreallocated(mat, 1); 7371 if (!ov) PetscFunctionReturn(PETSC_SUCCESS); 7372 PetscCall(PetscLogEventBegin(MAT_IncreaseOverlap, mat, 0, 0, 0)); 7373 for (i = 0; i < n; i++) PetscCall(MatIncreaseOverlapSplit_Single(mat, &is[i], ov)); 7374 PetscCall(PetscLogEventEnd(MAT_IncreaseOverlap, mat, 0, 0, 0)); 7375 PetscFunctionReturn(PETSC_SUCCESS); 7376 } 7377 7378 /*@ 7379 MatGetBlockSize - Returns the matrix block size. 7380 7381 Not Collective 7382 7383 Input Parameter: 7384 . mat - the matrix 7385 7386 Output Parameter: 7387 . bs - block size 7388 7389 Level: intermediate 7390 7391 Notes: 7392 Block row formats are `MATBAIJ` and `MATSBAIJ` ALWAYS have square block storage in the matrix. 7393 7394 If the block size has not been set yet this routine returns 1. 7395 7396 .seealso: [](ch_matrices), `Mat`, `MATBAIJ`, `MATSBAIJ`, `MatCreateSeqBAIJ()`, `MatCreateBAIJ()`, `MatGetBlockSizes()` 7397 @*/ 7398 PetscErrorCode MatGetBlockSize(Mat mat, PetscInt *bs) 7399 { 7400 PetscFunctionBegin; 7401 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 7402 PetscAssertPointer(bs, 2); 7403 *bs = PetscAbs(mat->rmap->bs); 7404 PetscFunctionReturn(PETSC_SUCCESS); 7405 } 7406 7407 /*@ 7408 MatGetBlockSizes - Returns the matrix block row and column sizes. 7409 7410 Not Collective 7411 7412 Input Parameter: 7413 . mat - the matrix 7414 7415 Output Parameters: 7416 + rbs - row block size 7417 - cbs - column block size 7418 7419 Level: intermediate 7420 7421 Notes: 7422 Block row formats are `MATBAIJ` and `MATSBAIJ` ALWAYS have square block storage in the matrix. 7423 If you pass a different block size for the columns than the rows, the row block size determines the square block storage. 7424 7425 If a block size has not been set yet this routine returns 1. 7426 7427 .seealso: [](ch_matrices), `Mat`, `MATBAIJ`, `MATSBAIJ`, `MatCreateSeqBAIJ()`, `MatCreateBAIJ()`, `MatGetBlockSize()`, `MatSetBlockSize()`, `MatSetBlockSizes()` 7428 @*/ 7429 PetscErrorCode MatGetBlockSizes(Mat mat, PetscInt *rbs, PetscInt *cbs) 7430 { 7431 PetscFunctionBegin; 7432 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 7433 if (rbs) PetscAssertPointer(rbs, 2); 7434 if (cbs) PetscAssertPointer(cbs, 3); 7435 if (rbs) *rbs = PetscAbs(mat->rmap->bs); 7436 if (cbs) *cbs = PetscAbs(mat->cmap->bs); 7437 PetscFunctionReturn(PETSC_SUCCESS); 7438 } 7439 7440 /*@ 7441 MatSetBlockSize - Sets the matrix block size. 7442 7443 Logically Collective 7444 7445 Input Parameters: 7446 + mat - the matrix 7447 - bs - block size 7448 7449 Level: intermediate 7450 7451 Notes: 7452 Block row formats are `MATBAIJ` and `MATSBAIJ` formats ALWAYS have square block storage in the matrix. 7453 This must be called before `MatSetUp()` or MatXXXSetPreallocation() (or will default to 1) and the block size cannot be changed later. 7454 7455 For `MATAIJ` matrix format, this function can be called at a later stage, provided that the specified block size 7456 is compatible with the matrix local sizes. 7457 7458 .seealso: [](ch_matrices), `Mat`, `MATBAIJ`, `MATSBAIJ`, `MATAIJ`, `MatCreateSeqBAIJ()`, `MatCreateBAIJ()`, `MatGetBlockSize()`, `MatSetBlockSizes()`, `MatGetBlockSizes()` 7459 @*/ 7460 PetscErrorCode MatSetBlockSize(Mat mat, PetscInt bs) 7461 { 7462 PetscFunctionBegin; 7463 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 7464 PetscValidLogicalCollectiveInt(mat, bs, 2); 7465 PetscCall(MatSetBlockSizes(mat, bs, bs)); 7466 PetscFunctionReturn(PETSC_SUCCESS); 7467 } 7468 7469 typedef struct { 7470 PetscInt n; 7471 IS *is; 7472 Mat *mat; 7473 PetscObjectState nonzerostate; 7474 Mat C; 7475 } EnvelopeData; 7476 7477 static PetscErrorCode EnvelopeDataDestroy(EnvelopeData *edata) 7478 { 7479 for (PetscInt i = 0; i < edata->n; i++) PetscCall(ISDestroy(&edata->is[i])); 7480 PetscCall(PetscFree(edata->is)); 7481 PetscCall(PetscFree(edata)); 7482 return PETSC_SUCCESS; 7483 } 7484 7485 /*@ 7486 MatComputeVariableBlockEnvelope - Given a matrix whose nonzeros are in blocks along the diagonal this computes and stores 7487 the sizes of these blocks in the matrix. An individual block may lie over several processes. 7488 7489 Collective 7490 7491 Input Parameter: 7492 . mat - the matrix 7493 7494 Level: intermediate 7495 7496 Notes: 7497 There can be zeros within the blocks 7498 7499 The blocks can overlap between processes, including laying on more than two processes 7500 7501 .seealso: [](ch_matrices), `Mat`, `MatInvertVariableBlockEnvelope()`, `MatSetVariableBlockSizes()` 7502 @*/ 7503 PetscErrorCode MatComputeVariableBlockEnvelope(Mat mat) 7504 { 7505 PetscInt n, *sizes, *starts, i = 0, env = 0, tbs = 0, lblocks = 0, rstart, II, ln = 0, cnt = 0, cstart, cend; 7506 PetscInt *diag, *odiag, sc; 7507 VecScatter scatter; 7508 PetscScalar *seqv; 7509 const PetscScalar *parv; 7510 const PetscInt *ia, *ja; 7511 PetscBool set, flag, done; 7512 Mat AA = mat, A; 7513 MPI_Comm comm; 7514 PetscMPIInt rank, size, tag; 7515 MPI_Status status; 7516 PetscContainer container; 7517 EnvelopeData *edata; 7518 Vec seq, par; 7519 IS isglobal; 7520 7521 PetscFunctionBegin; 7522 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 7523 PetscCall(MatIsSymmetricKnown(mat, &set, &flag)); 7524 if (!set || !flag) { 7525 /* TODO: only needs nonzero structure of transpose */ 7526 PetscCall(MatTranspose(mat, MAT_INITIAL_MATRIX, &AA)); 7527 PetscCall(MatAXPY(AA, 1.0, mat, DIFFERENT_NONZERO_PATTERN)); 7528 } 7529 PetscCall(MatAIJGetLocalMat(AA, &A)); 7530 PetscCall(MatGetRowIJ(A, 0, PETSC_FALSE, PETSC_FALSE, &n, &ia, &ja, &done)); 7531 PetscCheck(done, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Unable to get IJ structure from matrix"); 7532 7533 PetscCall(MatGetLocalSize(mat, &n, NULL)); 7534 PetscCall(PetscObjectGetNewTag((PetscObject)mat, &tag)); 7535 PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 7536 PetscCallMPI(MPI_Comm_size(comm, &size)); 7537 PetscCallMPI(MPI_Comm_rank(comm, &rank)); 7538 7539 PetscCall(PetscMalloc2(n, &sizes, n, &starts)); 7540 7541 if (rank > 0) { 7542 PetscCallMPI(MPI_Recv(&env, 1, MPIU_INT, rank - 1, tag, comm, &status)); 7543 PetscCallMPI(MPI_Recv(&tbs, 1, MPIU_INT, rank - 1, tag, comm, &status)); 7544 } 7545 PetscCall(MatGetOwnershipRange(mat, &rstart, NULL)); 7546 for (i = 0; i < n; i++) { 7547 env = PetscMax(env, ja[ia[i + 1] - 1]); 7548 II = rstart + i; 7549 if (env == II) { 7550 starts[lblocks] = tbs; 7551 sizes[lblocks++] = 1 + II - tbs; 7552 tbs = 1 + II; 7553 } 7554 } 7555 if (rank < size - 1) { 7556 PetscCallMPI(MPI_Send(&env, 1, MPIU_INT, rank + 1, tag, comm)); 7557 PetscCallMPI(MPI_Send(&tbs, 1, MPIU_INT, rank + 1, tag, comm)); 7558 } 7559 7560 PetscCall(MatRestoreRowIJ(A, 0, PETSC_FALSE, PETSC_FALSE, &n, &ia, &ja, &done)); 7561 if (!set || !flag) PetscCall(MatDestroy(&AA)); 7562 PetscCall(MatDestroy(&A)); 7563 7564 PetscCall(PetscNew(&edata)); 7565 PetscCall(MatGetNonzeroState(mat, &edata->nonzerostate)); 7566 edata->n = lblocks; 7567 /* create IS needed for extracting blocks from the original matrix */ 7568 PetscCall(PetscMalloc1(lblocks, &edata->is)); 7569 for (PetscInt i = 0; i < lblocks; i++) PetscCall(ISCreateStride(PETSC_COMM_SELF, sizes[i], starts[i], 1, &edata->is[i])); 7570 7571 /* Create the resulting inverse matrix structure with preallocation information */ 7572 PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &edata->C)); 7573 PetscCall(MatSetSizes(edata->C, mat->rmap->n, mat->cmap->n, mat->rmap->N, mat->cmap->N)); 7574 PetscCall(MatSetBlockSizesFromMats(edata->C, mat, mat)); 7575 PetscCall(MatSetType(edata->C, MATAIJ)); 7576 7577 /* Communicate the start and end of each row, from each block to the correct rank */ 7578 /* TODO: Use PetscSF instead of VecScatter */ 7579 for (PetscInt i = 0; i < lblocks; i++) ln += sizes[i]; 7580 PetscCall(VecCreateSeq(PETSC_COMM_SELF, 2 * ln, &seq)); 7581 PetscCall(VecGetArrayWrite(seq, &seqv)); 7582 for (PetscInt i = 0; i < lblocks; i++) { 7583 for (PetscInt j = 0; j < sizes[i]; j++) { 7584 seqv[cnt] = starts[i]; 7585 seqv[cnt + 1] = starts[i] + sizes[i]; 7586 cnt += 2; 7587 } 7588 } 7589 PetscCall(VecRestoreArrayWrite(seq, &seqv)); 7590 PetscCallMPI(MPI_Scan(&cnt, &sc, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)mat))); 7591 sc -= cnt; 7592 PetscCall(VecCreateMPI(PetscObjectComm((PetscObject)mat), 2 * mat->rmap->n, 2 * mat->rmap->N, &par)); 7593 PetscCall(ISCreateStride(PETSC_COMM_SELF, cnt, sc, 1, &isglobal)); 7594 PetscCall(VecScatterCreate(seq, NULL, par, isglobal, &scatter)); 7595 PetscCall(ISDestroy(&isglobal)); 7596 PetscCall(VecScatterBegin(scatter, seq, par, INSERT_VALUES, SCATTER_FORWARD)); 7597 PetscCall(VecScatterEnd(scatter, seq, par, INSERT_VALUES, SCATTER_FORWARD)); 7598 PetscCall(VecScatterDestroy(&scatter)); 7599 PetscCall(VecDestroy(&seq)); 7600 PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend)); 7601 PetscCall(PetscMalloc2(mat->rmap->n, &diag, mat->rmap->n, &odiag)); 7602 PetscCall(VecGetArrayRead(par, &parv)); 7603 cnt = 0; 7604 PetscCall(MatGetSize(mat, NULL, &n)); 7605 for (PetscInt i = 0; i < mat->rmap->n; i++) { 7606 PetscInt start, end, d = 0, od = 0; 7607 7608 start = (PetscInt)PetscRealPart(parv[cnt]); 7609 end = (PetscInt)PetscRealPart(parv[cnt + 1]); 7610 cnt += 2; 7611 7612 if (start < cstart) { 7613 od += cstart - start + n - cend; 7614 d += cend - cstart; 7615 } else if (start < cend) { 7616 od += n - cend; 7617 d += cend - start; 7618 } else od += n - start; 7619 if (end <= cstart) { 7620 od -= cstart - end + n - cend; 7621 d -= cend - cstart; 7622 } else if (end < cend) { 7623 od -= n - cend; 7624 d -= cend - end; 7625 } else od -= n - end; 7626 7627 odiag[i] = od; 7628 diag[i] = d; 7629 } 7630 PetscCall(VecRestoreArrayRead(par, &parv)); 7631 PetscCall(VecDestroy(&par)); 7632 PetscCall(MatXAIJSetPreallocation(edata->C, mat->rmap->bs, diag, odiag, NULL, NULL)); 7633 PetscCall(PetscFree2(diag, odiag)); 7634 PetscCall(PetscFree2(sizes, starts)); 7635 7636 PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 7637 PetscCall(PetscContainerSetPointer(container, edata)); 7638 PetscCall(PetscContainerSetUserDestroy(container, (PetscErrorCode(*)(void *))EnvelopeDataDestroy)); 7639 PetscCall(PetscObjectCompose((PetscObject)mat, "EnvelopeData", (PetscObject)container)); 7640 PetscCall(PetscObjectDereference((PetscObject)container)); 7641 PetscFunctionReturn(PETSC_SUCCESS); 7642 } 7643 7644 /*@ 7645 MatInvertVariableBlockEnvelope - set matrix C to be the inverted block diagonal of matrix A 7646 7647 Collective 7648 7649 Input Parameters: 7650 + A - the matrix 7651 - reuse - indicates if the `C` matrix was obtained from a previous call to this routine 7652 7653 Output Parameter: 7654 . C - matrix with inverted block diagonal of `A` 7655 7656 Level: advanced 7657 7658 Note: 7659 For efficiency the matrix `A` should have all the nonzero entries clustered in smallish blocks along the diagonal. 7660 7661 .seealso: [](ch_matrices), `Mat`, `MatInvertBlockDiagonal()`, `MatComputeBlockDiagonal()` 7662 @*/ 7663 PetscErrorCode MatInvertVariableBlockEnvelope(Mat A, MatReuse reuse, Mat *C) 7664 { 7665 PetscContainer container; 7666 EnvelopeData *edata; 7667 PetscObjectState nonzerostate; 7668 7669 PetscFunctionBegin; 7670 PetscCall(PetscObjectQuery((PetscObject)A, "EnvelopeData", (PetscObject *)&container)); 7671 if (!container) { 7672 PetscCall(MatComputeVariableBlockEnvelope(A)); 7673 PetscCall(PetscObjectQuery((PetscObject)A, "EnvelopeData", (PetscObject *)&container)); 7674 } 7675 PetscCall(PetscContainerGetPointer(container, (void **)&edata)); 7676 PetscCall(MatGetNonzeroState(A, &nonzerostate)); 7677 PetscCheck(nonzerostate <= edata->nonzerostate, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Cannot handle changes to matrix nonzero structure"); 7678 PetscCheck(reuse != MAT_REUSE_MATRIX || *C == edata->C, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "C matrix must be the same as previously output"); 7679 7680 PetscCall(MatCreateSubMatrices(A, edata->n, edata->is, edata->is, MAT_INITIAL_MATRIX, &edata->mat)); 7681 *C = edata->C; 7682 7683 for (PetscInt i = 0; i < edata->n; i++) { 7684 Mat D; 7685 PetscScalar *dvalues; 7686 7687 PetscCall(MatConvert(edata->mat[i], MATSEQDENSE, MAT_INITIAL_MATRIX, &D)); 7688 PetscCall(MatSetOption(*C, MAT_ROW_ORIENTED, PETSC_FALSE)); 7689 PetscCall(MatSeqDenseInvert(D)); 7690 PetscCall(MatDenseGetArray(D, &dvalues)); 7691 PetscCall(MatSetValuesIS(*C, edata->is[i], edata->is[i], dvalues, INSERT_VALUES)); 7692 PetscCall(MatDestroy(&D)); 7693 } 7694 PetscCall(MatDestroySubMatrices(edata->n, &edata->mat)); 7695 PetscCall(MatAssemblyBegin(*C, MAT_FINAL_ASSEMBLY)); 7696 PetscCall(MatAssemblyEnd(*C, MAT_FINAL_ASSEMBLY)); 7697 PetscFunctionReturn(PETSC_SUCCESS); 7698 } 7699 7700 /*@ 7701 MatSetVariableBlockSizes - Sets diagonal point-blocks of the matrix that need not be of the same size 7702 7703 Logically Collective 7704 7705 Input Parameters: 7706 + mat - the matrix 7707 . nblocks - the number of blocks on this process, each block can only exist on a single process 7708 - bsizes - the block sizes 7709 7710 Level: intermediate 7711 7712 Notes: 7713 Currently used by `PCVPBJACOBI` for `MATAIJ` matrices 7714 7715 Each variable point-block set of degrees of freedom must live on a single MPI process. That is a point block cannot straddle two MPI processes. 7716 7717 .seealso: [](ch_matrices), `Mat`, `MatCreateSeqBAIJ()`, `MatCreateBAIJ()`, `MatGetBlockSize()`, `MatSetBlockSizes()`, `MatGetBlockSizes()`, `MatGetVariableBlockSizes()`, 7718 `MatComputeVariableBlockEnvelope()`, `PCVPBJACOBI` 7719 @*/ 7720 PetscErrorCode MatSetVariableBlockSizes(Mat mat, PetscInt nblocks, PetscInt *bsizes) 7721 { 7722 PetscInt i, ncnt = 0, nlocal; 7723 7724 PetscFunctionBegin; 7725 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 7726 PetscCheck(nblocks >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Number of local blocks must be great than or equal to zero"); 7727 PetscCall(MatGetLocalSize(mat, &nlocal, NULL)); 7728 for (i = 0; i < nblocks; i++) ncnt += bsizes[i]; 7729 PetscCheck(ncnt == nlocal, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Sum of local block sizes %" PetscInt_FMT " does not equal local size of matrix %" PetscInt_FMT, ncnt, nlocal); 7730 PetscCall(PetscFree(mat->bsizes)); 7731 mat->nblocks = nblocks; 7732 PetscCall(PetscMalloc1(nblocks, &mat->bsizes)); 7733 PetscCall(PetscArraycpy(mat->bsizes, bsizes, nblocks)); 7734 PetscFunctionReturn(PETSC_SUCCESS); 7735 } 7736 7737 /*@C 7738 MatGetVariableBlockSizes - Gets a diagonal blocks of the matrix that need not be of the same size 7739 7740 Logically Collective; No Fortran Support 7741 7742 Input Parameter: 7743 . mat - the matrix 7744 7745 Output Parameters: 7746 + nblocks - the number of blocks on this process 7747 - bsizes - the block sizes 7748 7749 Level: intermediate 7750 7751 .seealso: [](ch_matrices), `Mat`, `MatCreateSeqBAIJ()`, `MatCreateBAIJ()`, `MatGetBlockSize()`, `MatSetBlockSizes()`, `MatGetBlockSizes()`, `MatSetVariableBlockSizes()`, `MatComputeVariableBlockEnvelope()` 7752 @*/ 7753 PetscErrorCode MatGetVariableBlockSizes(Mat mat, PetscInt *nblocks, const PetscInt **bsizes) 7754 { 7755 PetscFunctionBegin; 7756 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 7757 *nblocks = mat->nblocks; 7758 *bsizes = mat->bsizes; 7759 PetscFunctionReturn(PETSC_SUCCESS); 7760 } 7761 7762 /*@ 7763 MatSetBlockSizes - Sets the matrix block row and column sizes. 7764 7765 Logically Collective 7766 7767 Input Parameters: 7768 + mat - the matrix 7769 . rbs - row block size 7770 - cbs - column block size 7771 7772 Level: intermediate 7773 7774 Notes: 7775 Block row formats are `MATBAIJ` and `MATSBAIJ`. These formats ALWAYS have square block storage in the matrix. 7776 If you pass a different block size for the columns than the rows, the row block size determines the square block storage. 7777 This must be called before `MatSetUp()` or MatXXXSetPreallocation() (or will default to 1) and the block size cannot be changed later. 7778 7779 For `MATAIJ` matrix this function can be called at a later stage, provided that the specified block sizes 7780 are compatible with the matrix local sizes. 7781 7782 The row and column block size determine the blocksize of the "row" and "column" vectors returned by `MatCreateVecs()`. 7783 7784 .seealso: [](ch_matrices), `Mat`, `MatCreateSeqBAIJ()`, `MatCreateBAIJ()`, `MatGetBlockSize()`, `MatSetBlockSize()`, `MatGetBlockSizes()` 7785 @*/ 7786 PetscErrorCode MatSetBlockSizes(Mat mat, PetscInt rbs, PetscInt cbs) 7787 { 7788 PetscFunctionBegin; 7789 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 7790 PetscValidLogicalCollectiveInt(mat, rbs, 2); 7791 PetscValidLogicalCollectiveInt(mat, cbs, 3); 7792 PetscTryTypeMethod(mat, setblocksizes, rbs, cbs); 7793 if (mat->rmap->refcnt) { 7794 ISLocalToGlobalMapping l2g = NULL; 7795 PetscLayout nmap = NULL; 7796 7797 PetscCall(PetscLayoutDuplicate(mat->rmap, &nmap)); 7798 if (mat->rmap->mapping) PetscCall(ISLocalToGlobalMappingDuplicate(mat->rmap->mapping, &l2g)); 7799 PetscCall(PetscLayoutDestroy(&mat->rmap)); 7800 mat->rmap = nmap; 7801 mat->rmap->mapping = l2g; 7802 } 7803 if (mat->cmap->refcnt) { 7804 ISLocalToGlobalMapping l2g = NULL; 7805 PetscLayout nmap = NULL; 7806 7807 PetscCall(PetscLayoutDuplicate(mat->cmap, &nmap)); 7808 if (mat->cmap->mapping) PetscCall(ISLocalToGlobalMappingDuplicate(mat->cmap->mapping, &l2g)); 7809 PetscCall(PetscLayoutDestroy(&mat->cmap)); 7810 mat->cmap = nmap; 7811 mat->cmap->mapping = l2g; 7812 } 7813 PetscCall(PetscLayoutSetBlockSize(mat->rmap, rbs)); 7814 PetscCall(PetscLayoutSetBlockSize(mat->cmap, cbs)); 7815 PetscFunctionReturn(PETSC_SUCCESS); 7816 } 7817 7818 /*@ 7819 MatSetBlockSizesFromMats - Sets the matrix block row and column sizes to match a pair of matrices 7820 7821 Logically Collective 7822 7823 Input Parameters: 7824 + mat - the matrix 7825 . fromRow - matrix from which to copy row block size 7826 - fromCol - matrix from which to copy column block size (can be same as fromRow) 7827 7828 Level: developer 7829 7830 .seealso: [](ch_matrices), `Mat`, `MatCreateSeqBAIJ()`, `MatCreateBAIJ()`, `MatGetBlockSize()`, `MatSetBlockSizes()` 7831 @*/ 7832 PetscErrorCode MatSetBlockSizesFromMats(Mat mat, Mat fromRow, Mat fromCol) 7833 { 7834 PetscFunctionBegin; 7835 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 7836 PetscValidHeaderSpecific(fromRow, MAT_CLASSID, 2); 7837 PetscValidHeaderSpecific(fromCol, MAT_CLASSID, 3); 7838 if (fromRow->rmap->bs > 0) PetscCall(PetscLayoutSetBlockSize(mat->rmap, fromRow->rmap->bs)); 7839 if (fromCol->cmap->bs > 0) PetscCall(PetscLayoutSetBlockSize(mat->cmap, fromCol->cmap->bs)); 7840 PetscFunctionReturn(PETSC_SUCCESS); 7841 } 7842 7843 /*@ 7844 MatResidual - Default routine to calculate the residual r = b - Ax 7845 7846 Collective 7847 7848 Input Parameters: 7849 + mat - the matrix 7850 . b - the right-hand-side 7851 - x - the approximate solution 7852 7853 Output Parameter: 7854 . r - location to store the residual 7855 7856 Level: developer 7857 7858 .seealso: [](ch_matrices), `Mat`, `MatMult()`, `MatMultAdd()`, `PCMGSetResidual()` 7859 @*/ 7860 PetscErrorCode MatResidual(Mat mat, Vec b, Vec x, Vec r) 7861 { 7862 PetscFunctionBegin; 7863 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 7864 PetscValidHeaderSpecific(b, VEC_CLASSID, 2); 7865 PetscValidHeaderSpecific(x, VEC_CLASSID, 3); 7866 PetscValidHeaderSpecific(r, VEC_CLASSID, 4); 7867 PetscValidType(mat, 1); 7868 MatCheckPreallocated(mat, 1); 7869 PetscCall(PetscLogEventBegin(MAT_Residual, mat, 0, 0, 0)); 7870 if (!mat->ops->residual) { 7871 PetscCall(MatMult(mat, x, r)); 7872 PetscCall(VecAYPX(r, -1.0, b)); 7873 } else { 7874 PetscUseTypeMethod(mat, residual, b, x, r); 7875 } 7876 PetscCall(PetscLogEventEnd(MAT_Residual, mat, 0, 0, 0)); 7877 PetscFunctionReturn(PETSC_SUCCESS); 7878 } 7879 7880 /*MC 7881 MatGetRowIJF90 - Obtains the compressed row storage i and j indices for the local rows of a sparse matrix 7882 7883 Synopsis: 7884 MatGetRowIJF90(Mat A, PetscInt shift, PetscBool symmetric, PetscBool inodecompressed, PetscInt n, {PetscInt, pointer :: ia(:)}, {PetscInt, pointer :: ja(:)}, PetscBool done,integer ierr) 7885 7886 Not Collective 7887 7888 Input Parameters: 7889 + A - the matrix 7890 . shift - 0 or 1 indicating we want the indices starting at 0 or 1 7891 . symmetric - `PETSC_TRUE` or `PETSC_FALSE` indicating the matrix data structure should be symmetrized 7892 - inodecompressed - `PETSC_TRUE` or `PETSC_FALSE` indicating if the nonzero structure of the 7893 inodes or the nonzero elements is wanted. For `MATBAIJ` matrices the compressed version is 7894 always used. 7895 7896 Output Parameters: 7897 + n - number of local rows in the (possibly compressed) matrix 7898 . ia - the row pointers; that is ia[0] = 0, ia[row] = ia[row-1] + number of elements in that row of the matrix 7899 . ja - the column indices 7900 - done - indicates if the routine actually worked and returned appropriate ia[] and ja[] arrays; callers 7901 are responsible for handling the case when done == `PETSC_FALSE` and ia and ja are not set 7902 7903 Level: developer 7904 7905 Note: 7906 Use `MatRestoreRowIJF90()` when you no longer need access to the data 7907 7908 .seealso: [](ch_matrices), [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatGetRowIJ()`, `MatRestoreRowIJ()`, `MatRestoreRowIJF90()` 7909 M*/ 7910 7911 /*MC 7912 MatRestoreRowIJF90 - restores the compressed row storage i and j indices for the local rows of a sparse matrix obtained with `MatGetRowIJF90()` 7913 7914 Synopsis: 7915 MatRestoreRowIJF90(Mat A, PetscInt shift, PetscBool symmetric, PetscBool inodecompressed, PetscInt n, {PetscInt, pointer :: ia(:)}, {PetscInt, pointer :: ja(:)}, PetscBool done,integer ierr) 7916 7917 Not Collective 7918 7919 Input Parameters: 7920 + A - the matrix 7921 . shift - 0 or 1 indicating we want the indices starting at 0 or 1 7922 . symmetric - `PETSC_TRUE` or `PETSC_FALSE` indicating the matrix data structure should be symmetrized 7923 inodecompressed - `PETSC_TRUE` or `PETSC_FALSE` indicating if the nonzero structure of the 7924 inodes or the nonzero elements is wanted. For `MATBAIJ` matrices the compressed version is 7925 always used. 7926 . n - number of local rows in the (possibly compressed) matrix 7927 . ia - the row pointers; that is ia[0] = 0, ia[row] = ia[row-1] + number of elements in that row of the matrix 7928 . ja - the column indices 7929 - done - indicates if the routine actually worked and returned appropriate ia[] and ja[] arrays; callers 7930 are responsible for handling the case when done == `PETSC_FALSE` and ia and ja are not set 7931 7932 Level: developer 7933 7934 .seealso: [](ch_matrices), [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatGetRowIJ()`, `MatRestoreRowIJ()`, `MatGetRowIJF90()` 7935 M*/ 7936 7937 /*@C 7938 MatGetRowIJ - Returns the compressed row storage i and j indices for the local rows of a sparse matrix 7939 7940 Collective 7941 7942 Input Parameters: 7943 + mat - the matrix 7944 . shift - 0 or 1 indicating we want the indices starting at 0 or 1 7945 . symmetric - `PETSC_TRUE` or `PETSC_FALSE` indicating the matrix data structure should be symmetrized 7946 - inodecompressed - `PETSC_TRUE` or `PETSC_FALSE` indicating if the nonzero structure of the 7947 inodes or the nonzero elements is wanted. For `MATBAIJ` matrices the compressed version is 7948 always used. 7949 7950 Output Parameters: 7951 + n - number of local rows in the (possibly compressed) matrix, use `NULL` if not needed 7952 . ia - the row pointers; that is ia[0] = 0, ia[row] = ia[row-1] + number of elements in that row of the matrix, use `NULL` if not needed 7953 . ja - the column indices, use `NULL` if not needed 7954 - done - indicates if the routine actually worked and returned appropriate ia[] and ja[] arrays; callers 7955 are responsible for handling the case when done == `PETSC_FALSE` and ia and ja are not set 7956 7957 Level: developer 7958 7959 Notes: 7960 You CANNOT change any of the ia[] or ja[] values. 7961 7962 Use `MatRestoreRowIJ()` when you are finished accessing the ia[] and ja[] values. 7963 7964 Fortran Notes: 7965 Use 7966 .vb 7967 PetscInt, pointer :: ia(:),ja(:) 7968 call MatGetRowIJF90(mat,shift,symmetric,inodecompressed,n,ia,ja,done,ierr) 7969 ! Access the ith and jth entries via ia(i) and ja(j) 7970 .ve 7971 7972 `MatGetRowIJ()` Fortran binding is deprecated (since PETSc 3.19), use `MatGetRowIJF90()` 7973 7974 .seealso: [](ch_matrices), `Mat`, `MATAIJ`, `MatGetRowIJF90()`, `MatGetColumnIJ()`, `MatRestoreRowIJ()`, `MatSeqAIJGetArray()` 7975 @*/ 7976 PetscErrorCode MatGetRowIJ(Mat mat, PetscInt shift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *n, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 7977 { 7978 PetscFunctionBegin; 7979 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 7980 PetscValidType(mat, 1); 7981 if (n) PetscAssertPointer(n, 5); 7982 if (ia) PetscAssertPointer(ia, 6); 7983 if (ja) PetscAssertPointer(ja, 7); 7984 if (done) PetscAssertPointer(done, 8); 7985 MatCheckPreallocated(mat, 1); 7986 if (!mat->ops->getrowij && done) *done = PETSC_FALSE; 7987 else { 7988 if (done) *done = PETSC_TRUE; 7989 PetscCall(PetscLogEventBegin(MAT_GetRowIJ, mat, 0, 0, 0)); 7990 PetscUseTypeMethod(mat, getrowij, shift, symmetric, inodecompressed, n, ia, ja, done); 7991 PetscCall(PetscLogEventEnd(MAT_GetRowIJ, mat, 0, 0, 0)); 7992 } 7993 PetscFunctionReturn(PETSC_SUCCESS); 7994 } 7995 7996 /*@C 7997 MatGetColumnIJ - Returns the compressed column storage i and j indices for sequential matrices. 7998 7999 Collective 8000 8001 Input Parameters: 8002 + mat - the matrix 8003 . shift - 1 or zero indicating we want the indices starting at 0 or 1 8004 . symmetric - `PETSC_TRUE` or `PETSC_FALSE` indicating the matrix data structure should be 8005 symmetrized 8006 . inodecompressed - `PETSC_TRUE` or `PETSC_FALSE` indicating if the nonzero structure of the 8007 inodes or the nonzero elements is wanted. For `MATBAIJ` matrices the compressed version is 8008 always used. 8009 . n - number of columns in the (possibly compressed) matrix 8010 . ia - the column pointers; that is ia[0] = 0, ia[col] = i[col-1] + number of elements in that col of the matrix 8011 - ja - the row indices 8012 8013 Output Parameter: 8014 . done - `PETSC_TRUE` or `PETSC_FALSE`, indicating whether the values have been returned 8015 8016 Level: developer 8017 8018 .seealso: [](ch_matrices), `Mat`, `MatGetRowIJ()`, `MatRestoreColumnIJ()` 8019 @*/ 8020 PetscErrorCode MatGetColumnIJ(Mat mat, PetscInt shift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *n, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 8021 { 8022 PetscFunctionBegin; 8023 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 8024 PetscValidType(mat, 1); 8025 PetscAssertPointer(n, 5); 8026 if (ia) PetscAssertPointer(ia, 6); 8027 if (ja) PetscAssertPointer(ja, 7); 8028 PetscAssertPointer(done, 8); 8029 MatCheckPreallocated(mat, 1); 8030 if (!mat->ops->getcolumnij) *done = PETSC_FALSE; 8031 else { 8032 *done = PETSC_TRUE; 8033 PetscUseTypeMethod(mat, getcolumnij, shift, symmetric, inodecompressed, n, ia, ja, done); 8034 } 8035 PetscFunctionReturn(PETSC_SUCCESS); 8036 } 8037 8038 /*@C 8039 MatRestoreRowIJ - Call after you are completed with the ia,ja indices obtained with `MatGetRowIJ()`. 8040 8041 Collective 8042 8043 Input Parameters: 8044 + mat - the matrix 8045 . shift - 1 or zero indicating we want the indices starting at 0 or 1 8046 . symmetric - `PETSC_TRUE` or `PETSC_FALSE` indicating the matrix data structure should be symmetrized 8047 . inodecompressed - `PETSC_TRUE` or `PETSC_FALSE` indicating if the nonzero structure of the 8048 inodes or the nonzero elements is wanted. For `MATBAIJ` matrices the compressed version is 8049 always used. 8050 . n - size of (possibly compressed) matrix 8051 . ia - the row pointers 8052 - ja - the column indices 8053 8054 Output Parameter: 8055 . done - `PETSC_TRUE` or `PETSC_FALSE` indicated that the values have been returned 8056 8057 Level: developer 8058 8059 Note: 8060 This routine zeros out `n`, `ia`, and `ja`. This is to prevent accidental 8061 us of the array after it has been restored. If you pass `NULL`, it will 8062 not zero the pointers. Use of ia or ja after `MatRestoreRowIJ()` is invalid. 8063 8064 Fortran Note: 8065 `MatRestoreRowIJ()` Fortran binding is deprecated (since PETSc 3.19), use `MatRestoreRowIJF90()` 8066 8067 .seealso: [](ch_matrices), `Mat`, `MatGetRowIJ()`, `MatRestoreRowIJF90()`, `MatRestoreColumnIJ()` 8068 @*/ 8069 PetscErrorCode MatRestoreRowIJ(Mat mat, PetscInt shift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *n, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 8070 { 8071 PetscFunctionBegin; 8072 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 8073 PetscValidType(mat, 1); 8074 if (ia) PetscAssertPointer(ia, 6); 8075 if (ja) PetscAssertPointer(ja, 7); 8076 if (done) PetscAssertPointer(done, 8); 8077 MatCheckPreallocated(mat, 1); 8078 8079 if (!mat->ops->restorerowij && done) *done = PETSC_FALSE; 8080 else { 8081 if (done) *done = PETSC_TRUE; 8082 PetscUseTypeMethod(mat, restorerowij, shift, symmetric, inodecompressed, n, ia, ja, done); 8083 if (n) *n = 0; 8084 if (ia) *ia = NULL; 8085 if (ja) *ja = NULL; 8086 } 8087 PetscFunctionReturn(PETSC_SUCCESS); 8088 } 8089 8090 /*@C 8091 MatRestoreColumnIJ - Call after you are completed with the ia,ja indices obtained with `MatGetColumnIJ()`. 8092 8093 Collective 8094 8095 Input Parameters: 8096 + mat - the matrix 8097 . shift - 1 or zero indicating we want the indices starting at 0 or 1 8098 . symmetric - `PETSC_TRUE` or `PETSC_FALSE` indicating the matrix data structure should be symmetrized 8099 - inodecompressed - `PETSC_TRUE` or `PETSC_FALSE` indicating if the nonzero structure of the 8100 inodes or the nonzero elements is wanted. For `MATBAIJ` matrices the compressed version is 8101 always used. 8102 8103 Output Parameters: 8104 + n - size of (possibly compressed) matrix 8105 . ia - the column pointers 8106 . ja - the row indices 8107 - done - `PETSC_TRUE` or `PETSC_FALSE` indicated that the values have been returned 8108 8109 Level: developer 8110 8111 .seealso: [](ch_matrices), `Mat`, `MatGetColumnIJ()`, `MatRestoreRowIJ()` 8112 @*/ 8113 PetscErrorCode MatRestoreColumnIJ(Mat mat, PetscInt shift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *n, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 8114 { 8115 PetscFunctionBegin; 8116 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 8117 PetscValidType(mat, 1); 8118 if (ia) PetscAssertPointer(ia, 6); 8119 if (ja) PetscAssertPointer(ja, 7); 8120 PetscAssertPointer(done, 8); 8121 MatCheckPreallocated(mat, 1); 8122 8123 if (!mat->ops->restorecolumnij) *done = PETSC_FALSE; 8124 else { 8125 *done = PETSC_TRUE; 8126 PetscUseTypeMethod(mat, restorecolumnij, shift, symmetric, inodecompressed, n, ia, ja, done); 8127 if (n) *n = 0; 8128 if (ia) *ia = NULL; 8129 if (ja) *ja = NULL; 8130 } 8131 PetscFunctionReturn(PETSC_SUCCESS); 8132 } 8133 8134 /*@C 8135 MatColoringPatch - Used inside matrix coloring routines that use `MatGetRowIJ()` and/or 8136 `MatGetColumnIJ()`. 8137 8138 Collective 8139 8140 Input Parameters: 8141 + mat - the matrix 8142 . ncolors - maximum color value 8143 . n - number of entries in colorarray 8144 - colorarray - array indicating color for each column 8145 8146 Output Parameter: 8147 . iscoloring - coloring generated using colorarray information 8148 8149 Level: developer 8150 8151 .seealso: [](ch_matrices), `Mat`, `MatGetRowIJ()`, `MatGetColumnIJ()` 8152 @*/ 8153 PetscErrorCode MatColoringPatch(Mat mat, PetscInt ncolors, PetscInt n, ISColoringValue colorarray[], ISColoring *iscoloring) 8154 { 8155 PetscFunctionBegin; 8156 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 8157 PetscValidType(mat, 1); 8158 PetscAssertPointer(colorarray, 4); 8159 PetscAssertPointer(iscoloring, 5); 8160 MatCheckPreallocated(mat, 1); 8161 8162 if (!mat->ops->coloringpatch) { 8163 PetscCall(ISColoringCreate(PetscObjectComm((PetscObject)mat), ncolors, n, colorarray, PETSC_OWN_POINTER, iscoloring)); 8164 } else { 8165 PetscUseTypeMethod(mat, coloringpatch, ncolors, n, colorarray, iscoloring); 8166 } 8167 PetscFunctionReturn(PETSC_SUCCESS); 8168 } 8169 8170 /*@ 8171 MatSetUnfactored - Resets a factored matrix to be treated as unfactored. 8172 8173 Logically Collective 8174 8175 Input Parameter: 8176 . mat - the factored matrix to be reset 8177 8178 Level: developer 8179 8180 Notes: 8181 This routine should be used only with factored matrices formed by in-place 8182 factorization via ILU(0) (or by in-place LU factorization for the `MATSEQDENSE` 8183 format). This option can save memory, for example, when solving nonlinear 8184 systems with a matrix-free Newton-Krylov method and a matrix-based, in-place 8185 ILU(0) preconditioner. 8186 8187 One can specify in-place ILU(0) factorization by calling 8188 .vb 8189 PCType(pc,PCILU); 8190 PCFactorSeUseInPlace(pc); 8191 .ve 8192 or by using the options -pc_type ilu -pc_factor_in_place 8193 8194 In-place factorization ILU(0) can also be used as a local 8195 solver for the blocks within the block Jacobi or additive Schwarz 8196 methods (runtime option: -sub_pc_factor_in_place). See Users-Manual: ch_pc 8197 for details on setting local solver options. 8198 8199 Most users should employ the `KSP` interface for linear solvers 8200 instead of working directly with matrix algebra routines such as this. 8201 See, e.g., `KSPCreate()`. 8202 8203 .seealso: [](ch_matrices), `Mat`, `PCFactorSetUseInPlace()`, `PCFactorGetUseInPlace()` 8204 @*/ 8205 PetscErrorCode MatSetUnfactored(Mat mat) 8206 { 8207 PetscFunctionBegin; 8208 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 8209 PetscValidType(mat, 1); 8210 MatCheckPreallocated(mat, 1); 8211 mat->factortype = MAT_FACTOR_NONE; 8212 if (!mat->ops->setunfactored) PetscFunctionReturn(PETSC_SUCCESS); 8213 PetscUseTypeMethod(mat, setunfactored); 8214 PetscFunctionReturn(PETSC_SUCCESS); 8215 } 8216 8217 /*MC 8218 MatDenseGetArrayF90 - Accesses a matrix array from Fortran 8219 8220 Synopsis: 8221 MatDenseGetArrayF90(Mat x,{Scalar, pointer :: xx_v(:,:)},integer ierr) 8222 8223 Not Collective 8224 8225 Input Parameter: 8226 . x - matrix 8227 8228 Output Parameters: 8229 + xx_v - the Fortran pointer to the array 8230 - ierr - error code 8231 8232 Example of Usage: 8233 .vb 8234 PetscScalar, pointer xx_v(:,:) 8235 .... 8236 call MatDenseGetArrayF90(x,xx_v,ierr) 8237 a = xx_v(3) 8238 call MatDenseRestoreArrayF90(x,xx_v,ierr) 8239 .ve 8240 8241 Level: advanced 8242 8243 .seealso: [](ch_matrices), `Mat`, `MatDenseRestoreArrayF90()`, `MatDenseGetArray()`, `MatDenseRestoreArray()`, `MatSeqAIJGetArrayF90()` 8244 M*/ 8245 8246 /*MC 8247 MatDenseRestoreArrayF90 - Restores a matrix array that has been 8248 accessed with `MatDenseGetArrayF90()`. 8249 8250 Synopsis: 8251 MatDenseRestoreArrayF90(Mat x,{Scalar, pointer :: xx_v(:,:)},integer ierr) 8252 8253 Not Collective 8254 8255 Input Parameters: 8256 + x - matrix 8257 - xx_v - the Fortran90 pointer to the array 8258 8259 Output Parameter: 8260 . ierr - error code 8261 8262 Example of Usage: 8263 .vb 8264 PetscScalar, pointer xx_v(:,:) 8265 .... 8266 call MatDenseGetArrayF90(x,xx_v,ierr) 8267 a = xx_v(3) 8268 call MatDenseRestoreArrayF90(x,xx_v,ierr) 8269 .ve 8270 8271 Level: advanced 8272 8273 .seealso: [](ch_matrices), `Mat`, `MatDenseGetArrayF90()`, `MatDenseGetArray()`, `MatDenseRestoreArray()`, `MatSeqAIJRestoreArrayF90()` 8274 M*/ 8275 8276 /*MC 8277 MatSeqAIJGetArrayF90 - Accesses a matrix array from Fortran. 8278 8279 Synopsis: 8280 MatSeqAIJGetArrayF90(Mat x,{Scalar, pointer :: xx_v(:)},integer ierr) 8281 8282 Not Collective 8283 8284 Input Parameter: 8285 . x - matrix 8286 8287 Output Parameters: 8288 + xx_v - the Fortran pointer to the array 8289 - ierr - error code 8290 8291 Example of Usage: 8292 .vb 8293 PetscScalar, pointer xx_v(:) 8294 .... 8295 call MatSeqAIJGetArrayF90(x,xx_v,ierr) 8296 a = xx_v(3) 8297 call MatSeqAIJRestoreArrayF90(x,xx_v,ierr) 8298 .ve 8299 8300 Level: advanced 8301 8302 .seealso: [](ch_matrices), `Mat`, `MatSeqAIJRestoreArrayF90()`, `MatSeqAIJGetArray()`, `MatSeqAIJRestoreArray()`, `MatDenseGetArrayF90()` 8303 M*/ 8304 8305 /*MC 8306 MatSeqAIJRestoreArrayF90 - Restores a matrix array that has been 8307 accessed with `MatSeqAIJGetArrayF90()`. 8308 8309 Synopsis: 8310 MatSeqAIJRestoreArrayF90(Mat x,{Scalar, pointer :: xx_v(:)},integer ierr) 8311 8312 Not Collective 8313 8314 Input Parameters: 8315 + x - matrix 8316 - xx_v - the Fortran90 pointer to the array 8317 8318 Output Parameter: 8319 . ierr - error code 8320 8321 Example of Usage: 8322 .vb 8323 PetscScalar, pointer xx_v(:) 8324 .... 8325 call MatSeqAIJGetArrayF90(x,xx_v,ierr) 8326 a = xx_v(3) 8327 call MatSeqAIJRestoreArrayF90(x,xx_v,ierr) 8328 .ve 8329 8330 Level: advanced 8331 8332 .seealso: [](ch_matrices), `Mat`, `MatSeqAIJGetArrayF90()`, `MatSeqAIJGetArray()`, `MatSeqAIJRestoreArray()`, `MatDenseRestoreArrayF90()` 8333 M*/ 8334 8335 /*@ 8336 MatCreateSubMatrix - Gets a single submatrix on the same number of processors 8337 as the original matrix. 8338 8339 Collective 8340 8341 Input Parameters: 8342 + mat - the original matrix 8343 . isrow - parallel `IS` containing the rows this processor should obtain 8344 . iscol - parallel `IS` containing all columns you wish to keep. Each process should list the columns that will be in IT's "diagonal part" in the new matrix. 8345 - cll - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 8346 8347 Output Parameter: 8348 . newmat - the new submatrix, of the same type as the original matrix 8349 8350 Level: advanced 8351 8352 Notes: 8353 The submatrix will be able to be multiplied with vectors using the same layout as `iscol`. 8354 8355 Some matrix types place restrictions on the row and column indices, such 8356 as that they be sorted or that they be equal to each other. For `MATBAIJ` and `MATSBAIJ` matrices the indices must include all rows/columns of a block; 8357 for example, if the block size is 3 one cannot select the 0 and 2 rows without selecting the 1 row. 8358 8359 The index sets may not have duplicate entries. 8360 8361 The first time this is called you should use a cll of `MAT_INITIAL_MATRIX`, 8362 the `MatCreateSubMatrix()` routine will create the newmat for you. Any additional calls 8363 to this routine with a mat of the same nonzero structure and with a call of `MAT_REUSE_MATRIX` 8364 will reuse the matrix generated the first time. You should call `MatDestroy()` on `newmat` when 8365 you are finished using it. 8366 8367 The communicator of the newly obtained matrix is ALWAYS the same as the communicator of 8368 the input matrix. 8369 8370 If `iscol` is `NULL` then all columns are obtained (not supported in Fortran). 8371 8372 If `isrow` and `iscol` have a nontrivial block-size then the resulting matrix has this block-size as well. This feature 8373 is used by `PCFIELDSPLIT` to allow easy nesting of its use. 8374 8375 Example usage: 8376 Consider the following 8x8 matrix with 34 non-zero values, that is 8377 assembled across 3 processors. Let's assume that proc0 owns 3 rows, 8378 proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 8379 as follows 8380 .vb 8381 1 2 0 | 0 3 0 | 0 4 8382 Proc0 0 5 6 | 7 0 0 | 8 0 8383 9 0 10 | 11 0 0 | 12 0 8384 ------------------------------------- 8385 13 0 14 | 15 16 17 | 0 0 8386 Proc1 0 18 0 | 19 20 21 | 0 0 8387 0 0 0 | 22 23 0 | 24 0 8388 ------------------------------------- 8389 Proc2 25 26 27 | 0 0 28 | 29 0 8390 30 0 0 | 31 32 33 | 0 34 8391 .ve 8392 8393 Suppose `isrow` = [0 1 | 4 | 6 7] and `iscol` = [1 2 | 3 4 5 | 6]. The resulting submatrix is 8394 8395 .vb 8396 2 0 | 0 3 0 | 0 8397 Proc0 5 6 | 7 0 0 | 8 8398 ------------------------------- 8399 Proc1 18 0 | 19 20 21 | 0 8400 ------------------------------- 8401 Proc2 26 27 | 0 0 28 | 29 8402 0 0 | 31 32 33 | 0 8403 .ve 8404 8405 .seealso: [](ch_matrices), `Mat`, `MatCreateSubMatrices()`, `MatCreateSubMatricesMPI()`, `MatCreateSubMatrixVirtual()`, `MatSubMatrixVirtualUpdate()` 8406 @*/ 8407 PetscErrorCode MatCreateSubMatrix(Mat mat, IS isrow, IS iscol, MatReuse cll, Mat *newmat) 8408 { 8409 PetscMPIInt size; 8410 Mat *local; 8411 IS iscoltmp; 8412 PetscBool flg; 8413 8414 PetscFunctionBegin; 8415 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 8416 PetscValidHeaderSpecific(isrow, IS_CLASSID, 2); 8417 if (iscol) PetscValidHeaderSpecific(iscol, IS_CLASSID, 3); 8418 PetscAssertPointer(newmat, 5); 8419 if (cll == MAT_REUSE_MATRIX) PetscValidHeaderSpecific(*newmat, MAT_CLASSID, 5); 8420 PetscValidType(mat, 1); 8421 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 8422 PetscCheck(cll != MAT_IGNORE_MATRIX, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Cannot use MAT_IGNORE_MATRIX"); 8423 8424 MatCheckPreallocated(mat, 1); 8425 PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)mat), &size)); 8426 8427 if (!iscol || isrow == iscol) { 8428 PetscBool stride; 8429 PetscMPIInt grabentirematrix = 0, grab; 8430 PetscCall(PetscObjectTypeCompare((PetscObject)isrow, ISSTRIDE, &stride)); 8431 if (stride) { 8432 PetscInt first, step, n, rstart, rend; 8433 PetscCall(ISStrideGetInfo(isrow, &first, &step)); 8434 if (step == 1) { 8435 PetscCall(MatGetOwnershipRange(mat, &rstart, &rend)); 8436 if (rstart == first) { 8437 PetscCall(ISGetLocalSize(isrow, &n)); 8438 if (n == rend - rstart) grabentirematrix = 1; 8439 } 8440 } 8441 } 8442 PetscCall(MPIU_Allreduce(&grabentirematrix, &grab, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat))); 8443 if (grab) { 8444 PetscCall(PetscInfo(mat, "Getting entire matrix as submatrix\n")); 8445 if (cll == MAT_INITIAL_MATRIX) { 8446 *newmat = mat; 8447 PetscCall(PetscObjectReference((PetscObject)mat)); 8448 } 8449 PetscFunctionReturn(PETSC_SUCCESS); 8450 } 8451 } 8452 8453 if (!iscol) { 8454 PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), mat->cmap->n, mat->cmap->rstart, 1, &iscoltmp)); 8455 } else { 8456 iscoltmp = iscol; 8457 } 8458 8459 /* if original matrix is on just one processor then use submatrix generated */ 8460 if (mat->ops->createsubmatrices && !mat->ops->createsubmatrix && size == 1 && cll == MAT_REUSE_MATRIX) { 8461 PetscCall(MatCreateSubMatrices(mat, 1, &isrow, &iscoltmp, MAT_REUSE_MATRIX, &newmat)); 8462 goto setproperties; 8463 } else if (mat->ops->createsubmatrices && !mat->ops->createsubmatrix && size == 1) { 8464 PetscCall(MatCreateSubMatrices(mat, 1, &isrow, &iscoltmp, MAT_INITIAL_MATRIX, &local)); 8465 *newmat = *local; 8466 PetscCall(PetscFree(local)); 8467 goto setproperties; 8468 } else if (!mat->ops->createsubmatrix) { 8469 /* Create a new matrix type that implements the operation using the full matrix */ 8470 PetscCall(PetscLogEventBegin(MAT_CreateSubMat, mat, 0, 0, 0)); 8471 switch (cll) { 8472 case MAT_INITIAL_MATRIX: 8473 PetscCall(MatCreateSubMatrixVirtual(mat, isrow, iscoltmp, newmat)); 8474 break; 8475 case MAT_REUSE_MATRIX: 8476 PetscCall(MatSubMatrixVirtualUpdate(*newmat, mat, isrow, iscoltmp)); 8477 break; 8478 default: 8479 SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_OUTOFRANGE, "Invalid MatReuse, must be either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX"); 8480 } 8481 PetscCall(PetscLogEventEnd(MAT_CreateSubMat, mat, 0, 0, 0)); 8482 goto setproperties; 8483 } 8484 8485 PetscCall(PetscLogEventBegin(MAT_CreateSubMat, mat, 0, 0, 0)); 8486 PetscUseTypeMethod(mat, createsubmatrix, isrow, iscoltmp, cll, newmat); 8487 PetscCall(PetscLogEventEnd(MAT_CreateSubMat, mat, 0, 0, 0)); 8488 8489 setproperties: 8490 PetscCall(ISEqualUnsorted(isrow, iscoltmp, &flg)); 8491 if (flg) PetscCall(MatPropagateSymmetryOptions(mat, *newmat)); 8492 if (!iscol) PetscCall(ISDestroy(&iscoltmp)); 8493 if (*newmat && cll == MAT_INITIAL_MATRIX) PetscCall(PetscObjectStateIncrease((PetscObject)*newmat)); 8494 PetscFunctionReturn(PETSC_SUCCESS); 8495 } 8496 8497 /*@ 8498 MatPropagateSymmetryOptions - Propagates symmetry options set on a matrix to another matrix 8499 8500 Not Collective 8501 8502 Input Parameters: 8503 + A - the matrix we wish to propagate options from 8504 - B - the matrix we wish to propagate options to 8505 8506 Level: beginner 8507 8508 Note: 8509 Propagates the options associated to `MAT_SYMMETRY_ETERNAL`, `MAT_STRUCTURALLY_SYMMETRIC`, `MAT_HERMITIAN`, `MAT_SPD`, `MAT_SYMMETRIC`, and `MAT_STRUCTURAL_SYMMETRY_ETERNAL` 8510 8511 .seealso: [](ch_matrices), `Mat`, `MatSetOption()`, `MatIsSymmetricKnown()`, `MatIsSPDKnown()`, `MatIsHermitianKnown()`, `MatIsStructurallySymmetricKnown()` 8512 @*/ 8513 PetscErrorCode MatPropagateSymmetryOptions(Mat A, Mat B) 8514 { 8515 PetscFunctionBegin; 8516 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 8517 PetscValidHeaderSpecific(B, MAT_CLASSID, 2); 8518 B->symmetry_eternal = A->symmetry_eternal; 8519 B->structural_symmetry_eternal = A->structural_symmetry_eternal; 8520 B->symmetric = A->symmetric; 8521 B->structurally_symmetric = A->structurally_symmetric; 8522 B->spd = A->spd; 8523 B->hermitian = A->hermitian; 8524 PetscFunctionReturn(PETSC_SUCCESS); 8525 } 8526 8527 /*@ 8528 MatStashSetInitialSize - sets the sizes of the matrix stash, that is 8529 used during the assembly process to store values that belong to 8530 other processors. 8531 8532 Not Collective 8533 8534 Input Parameters: 8535 + mat - the matrix 8536 . size - the initial size of the stash. 8537 - bsize - the initial size of the block-stash(if used). 8538 8539 Options Database Keys: 8540 + -matstash_initial_size <size> or <size0,size1,...sizep-1> - set initial size 8541 - -matstash_block_initial_size <bsize> or <bsize0,bsize1,...bsizep-1> - set initial block size 8542 8543 Level: intermediate 8544 8545 Notes: 8546 The block-stash is used for values set with `MatSetValuesBlocked()` while 8547 the stash is used for values set with `MatSetValues()` 8548 8549 Run with the option -info and look for output of the form 8550 MatAssemblyBegin_MPIXXX:Stash has MM entries, uses nn mallocs. 8551 to determine the appropriate value, MM, to use for size and 8552 MatAssemblyBegin_MPIXXX:Block-Stash has BMM entries, uses nn mallocs. 8553 to determine the value, BMM to use for bsize 8554 8555 .seealso: [](ch_matrices), `MatAssemblyBegin()`, `MatAssemblyEnd()`, `Mat`, `MatStashGetInfo()` 8556 @*/ 8557 PetscErrorCode MatStashSetInitialSize(Mat mat, PetscInt size, PetscInt bsize) 8558 { 8559 PetscFunctionBegin; 8560 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 8561 PetscValidType(mat, 1); 8562 PetscCall(MatStashSetInitialSize_Private(&mat->stash, size)); 8563 PetscCall(MatStashSetInitialSize_Private(&mat->bstash, bsize)); 8564 PetscFunctionReturn(PETSC_SUCCESS); 8565 } 8566 8567 /*@ 8568 MatInterpolateAdd - $w = y + A*x$ or $A^T*x$ depending on the shape of 8569 the matrix 8570 8571 Neighbor-wise Collective 8572 8573 Input Parameters: 8574 + A - the matrix 8575 . x - the vector to be multiplied by the interpolation operator 8576 - y - the vector to be added to the result 8577 8578 Output Parameter: 8579 . w - the resulting vector 8580 8581 Level: intermediate 8582 8583 Notes: 8584 `w` may be the same vector as `y`. 8585 8586 This allows one to use either the restriction or interpolation (its transpose) 8587 matrix to do the interpolation 8588 8589 .seealso: [](ch_matrices), `Mat`, `MatMultAdd()`, `MatMultTransposeAdd()`, `MatRestrict()`, `PCMG` 8590 @*/ 8591 PetscErrorCode MatInterpolateAdd(Mat A, Vec x, Vec y, Vec w) 8592 { 8593 PetscInt M, N, Ny; 8594 8595 PetscFunctionBegin; 8596 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 8597 PetscValidHeaderSpecific(x, VEC_CLASSID, 2); 8598 PetscValidHeaderSpecific(y, VEC_CLASSID, 3); 8599 PetscValidHeaderSpecific(w, VEC_CLASSID, 4); 8600 PetscCall(MatGetSize(A, &M, &N)); 8601 PetscCall(VecGetSize(y, &Ny)); 8602 if (M == Ny) { 8603 PetscCall(MatMultAdd(A, x, y, w)); 8604 } else { 8605 PetscCall(MatMultTransposeAdd(A, x, y, w)); 8606 } 8607 PetscFunctionReturn(PETSC_SUCCESS); 8608 } 8609 8610 /*@ 8611 MatInterpolate - $y = A*x$ or $A^T*x$ depending on the shape of 8612 the matrix 8613 8614 Neighbor-wise Collective 8615 8616 Input Parameters: 8617 + A - the matrix 8618 - x - the vector to be interpolated 8619 8620 Output Parameter: 8621 . y - the resulting vector 8622 8623 Level: intermediate 8624 8625 Note: 8626 This allows one to use either the restriction or interpolation (its transpose) 8627 matrix to do the interpolation 8628 8629 .seealso: [](ch_matrices), `Mat`, `MatMultAdd()`, `MatMultTransposeAdd()`, `MatRestrict()`, `PCMG` 8630 @*/ 8631 PetscErrorCode MatInterpolate(Mat A, Vec x, Vec y) 8632 { 8633 PetscInt M, N, Ny; 8634 8635 PetscFunctionBegin; 8636 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 8637 PetscValidHeaderSpecific(x, VEC_CLASSID, 2); 8638 PetscValidHeaderSpecific(y, VEC_CLASSID, 3); 8639 PetscCall(MatGetSize(A, &M, &N)); 8640 PetscCall(VecGetSize(y, &Ny)); 8641 if (M == Ny) { 8642 PetscCall(MatMult(A, x, y)); 8643 } else { 8644 PetscCall(MatMultTranspose(A, x, y)); 8645 } 8646 PetscFunctionReturn(PETSC_SUCCESS); 8647 } 8648 8649 /*@ 8650 MatRestrict - $y = A*x$ or $A^T*x$ 8651 8652 Neighbor-wise Collective 8653 8654 Input Parameters: 8655 + A - the matrix 8656 - x - the vector to be restricted 8657 8658 Output Parameter: 8659 . y - the resulting vector 8660 8661 Level: intermediate 8662 8663 Note: 8664 This allows one to use either the restriction or interpolation (its transpose) 8665 matrix to do the restriction 8666 8667 .seealso: [](ch_matrices), `Mat`, `MatMultAdd()`, `MatMultTransposeAdd()`, `MatInterpolate()`, `PCMG` 8668 @*/ 8669 PetscErrorCode MatRestrict(Mat A, Vec x, Vec y) 8670 { 8671 PetscInt M, N, Ny; 8672 8673 PetscFunctionBegin; 8674 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 8675 PetscValidHeaderSpecific(x, VEC_CLASSID, 2); 8676 PetscValidHeaderSpecific(y, VEC_CLASSID, 3); 8677 PetscCall(MatGetSize(A, &M, &N)); 8678 PetscCall(VecGetSize(y, &Ny)); 8679 if (M == Ny) { 8680 PetscCall(MatMult(A, x, y)); 8681 } else { 8682 PetscCall(MatMultTranspose(A, x, y)); 8683 } 8684 PetscFunctionReturn(PETSC_SUCCESS); 8685 } 8686 8687 /*@ 8688 MatMatInterpolateAdd - $Y = W + A*X$ or $W + A^T*X$ depending on the shape of `A` 8689 8690 Neighbor-wise Collective 8691 8692 Input Parameters: 8693 + A - the matrix 8694 . x - the input dense matrix to be multiplied 8695 - w - the input dense matrix to be added to the result 8696 8697 Output Parameter: 8698 . y - the output dense matrix 8699 8700 Level: intermediate 8701 8702 Note: 8703 This allows one to use either the restriction or interpolation (its transpose) 8704 matrix to do the interpolation. `y` matrix can be reused if already created with the proper sizes, 8705 otherwise it will be recreated. `y` must be initialized to `NULL` if not supplied. 8706 8707 .seealso: [](ch_matrices), `Mat`, `MatInterpolateAdd()`, `MatMatInterpolate()`, `MatMatRestrict()`, `PCMG` 8708 @*/ 8709 PetscErrorCode MatMatInterpolateAdd(Mat A, Mat x, Mat w, Mat *y) 8710 { 8711 PetscInt M, N, Mx, Nx, Mo, My = 0, Ny = 0; 8712 PetscBool trans = PETSC_TRUE; 8713 MatReuse reuse = MAT_INITIAL_MATRIX; 8714 8715 PetscFunctionBegin; 8716 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 8717 PetscValidHeaderSpecific(x, MAT_CLASSID, 2); 8718 PetscValidType(x, 2); 8719 if (w) PetscValidHeaderSpecific(w, MAT_CLASSID, 3); 8720 if (*y) PetscValidHeaderSpecific(*y, MAT_CLASSID, 4); 8721 PetscCall(MatGetSize(A, &M, &N)); 8722 PetscCall(MatGetSize(x, &Mx, &Nx)); 8723 if (N == Mx) trans = PETSC_FALSE; 8724 else PetscCheck(M == Mx, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Size mismatch: A %" PetscInt_FMT "x%" PetscInt_FMT ", X %" PetscInt_FMT "x%" PetscInt_FMT, M, N, Mx, Nx); 8725 Mo = trans ? N : M; 8726 if (*y) { 8727 PetscCall(MatGetSize(*y, &My, &Ny)); 8728 if (Mo == My && Nx == Ny) { 8729 reuse = MAT_REUSE_MATRIX; 8730 } else { 8731 PetscCheck(w || *y != w, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Cannot reuse y and w, size mismatch: A %" PetscInt_FMT "x%" PetscInt_FMT ", X %" PetscInt_FMT "x%" PetscInt_FMT ", Y %" PetscInt_FMT "x%" PetscInt_FMT, M, N, Mx, Nx, My, Ny); 8732 PetscCall(MatDestroy(y)); 8733 } 8734 } 8735 8736 if (w && *y == w) { /* this is to minimize changes in PCMG */ 8737 PetscBool flg; 8738 8739 PetscCall(PetscObjectQuery((PetscObject)*y, "__MatMatIntAdd_w", (PetscObject *)&w)); 8740 if (w) { 8741 PetscInt My, Ny, Mw, Nw; 8742 8743 PetscCall(PetscObjectTypeCompare((PetscObject)*y, ((PetscObject)w)->type_name, &flg)); 8744 PetscCall(MatGetSize(*y, &My, &Ny)); 8745 PetscCall(MatGetSize(w, &Mw, &Nw)); 8746 if (!flg || My != Mw || Ny != Nw) w = NULL; 8747 } 8748 if (!w) { 8749 PetscCall(MatDuplicate(*y, MAT_COPY_VALUES, &w)); 8750 PetscCall(PetscObjectCompose((PetscObject)*y, "__MatMatIntAdd_w", (PetscObject)w)); 8751 PetscCall(PetscObjectDereference((PetscObject)w)); 8752 } else { 8753 PetscCall(MatCopy(*y, w, UNKNOWN_NONZERO_PATTERN)); 8754 } 8755 } 8756 if (!trans) { 8757 PetscCall(MatMatMult(A, x, reuse, PETSC_DEFAULT, y)); 8758 } else { 8759 PetscCall(MatTransposeMatMult(A, x, reuse, PETSC_DEFAULT, y)); 8760 } 8761 if (w) PetscCall(MatAXPY(*y, 1.0, w, UNKNOWN_NONZERO_PATTERN)); 8762 PetscFunctionReturn(PETSC_SUCCESS); 8763 } 8764 8765 /*@ 8766 MatMatInterpolate - $Y = A*X$ or $A^T*X$ depending on the shape of `A` 8767 8768 Neighbor-wise Collective 8769 8770 Input Parameters: 8771 + A - the matrix 8772 - x - the input dense matrix 8773 8774 Output Parameter: 8775 . y - the output dense matrix 8776 8777 Level: intermediate 8778 8779 Note: 8780 This allows one to use either the restriction or interpolation (its transpose) 8781 matrix to do the interpolation. `y` matrix can be reused if already created with the proper sizes, 8782 otherwise it will be recreated. `y` must be initialized to `NULL` if not supplied. 8783 8784 .seealso: [](ch_matrices), `Mat`, `MatInterpolate()`, `MatRestrict()`, `MatMatRestrict()`, `PCMG` 8785 @*/ 8786 PetscErrorCode MatMatInterpolate(Mat A, Mat x, Mat *y) 8787 { 8788 PetscFunctionBegin; 8789 PetscCall(MatMatInterpolateAdd(A, x, NULL, y)); 8790 PetscFunctionReturn(PETSC_SUCCESS); 8791 } 8792 8793 /*@ 8794 MatMatRestrict - $Y = A*X$ or $A^T*X$ depending on the shape of `A` 8795 8796 Neighbor-wise Collective 8797 8798 Input Parameters: 8799 + A - the matrix 8800 - x - the input dense matrix 8801 8802 Output Parameter: 8803 . y - the output dense matrix 8804 8805 Level: intermediate 8806 8807 Note: 8808 This allows one to use either the restriction or interpolation (its transpose) 8809 matrix to do the restriction. `y` matrix can be reused if already created with the proper sizes, 8810 otherwise it will be recreated. `y` must be initialized to `NULL` if not supplied. 8811 8812 .seealso: [](ch_matrices), `Mat`, `MatRestrict()`, `MatInterpolate()`, `MatMatInterpolate()`, `PCMG` 8813 @*/ 8814 PetscErrorCode MatMatRestrict(Mat A, Mat x, Mat *y) 8815 { 8816 PetscFunctionBegin; 8817 PetscCall(MatMatInterpolateAdd(A, x, NULL, y)); 8818 PetscFunctionReturn(PETSC_SUCCESS); 8819 } 8820 8821 /*@ 8822 MatGetNullSpace - retrieves the null space of a matrix. 8823 8824 Logically Collective 8825 8826 Input Parameters: 8827 + mat - the matrix 8828 - nullsp - the null space object 8829 8830 Level: developer 8831 8832 .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatNullSpaceCreate()`, `MatSetNearNullSpace()`, `MatSetNullSpace()`, `MatNullSpace` 8833 @*/ 8834 PetscErrorCode MatGetNullSpace(Mat mat, MatNullSpace *nullsp) 8835 { 8836 PetscFunctionBegin; 8837 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 8838 PetscAssertPointer(nullsp, 2); 8839 *nullsp = (mat->symmetric == PETSC_BOOL3_TRUE && !mat->nullsp) ? mat->transnullsp : mat->nullsp; 8840 PetscFunctionReturn(PETSC_SUCCESS); 8841 } 8842 8843 /*@ 8844 MatSetNullSpace - attaches a null space to a matrix. 8845 8846 Logically Collective 8847 8848 Input Parameters: 8849 + mat - the matrix 8850 - nullsp - the null space object 8851 8852 Level: advanced 8853 8854 Notes: 8855 This null space is used by the `KSP` linear solvers to solve singular systems. 8856 8857 Overwrites any previous null space that may have been attached. You can remove the null space from the matrix object by calling this routine with an nullsp of `NULL` 8858 8859 For inconsistent singular systems (linear systems where the right hand side is not in the range of the operator) the `KSP` residuals will not converge to 8860 to zero but the linear system will still be solved in a least squares sense. 8861 8862 The fundamental theorem of linear algebra (Gilbert Strang, Introduction to Applied Mathematics, page 72) states that 8863 the domain of a matrix A (from $R^n$ to $R^m$ (m rows, n columns) $R^n$ = the direct sum of the null space of A, n(A), + the range of $A^T$, $R(A^T)$. 8864 Similarly $R^m$ = direct sum n($A^T$) + R(A). Hence the linear system $A x = b$ has a solution only if b in R(A) (or correspondingly b is orthogonal to 8865 n($A^T$)) and if x is a solution then x + alpha n(A) is a solution for any alpha. The minimum norm solution is orthogonal to n(A). For problems without a solution 8866 the solution that minimizes the norm of the residual (the least squares solution) can be obtained by solving A x = \hat{b} where \hat{b} is b orthogonalized to the n($A^T$). 8867 This \hat{b} can be obtained by calling `MatNullSpaceRemove()` with the null space of the transpose of the matrix. 8868 8869 If the matrix is known to be symmetric because it is an `MATSBAIJ` matrix or one as called 8870 `MatSetOption`(mat,`MAT_SYMMETRIC` or possibly `MAT_SYMMETRY_ETERNAL`,`PETSC_TRUE`); this 8871 routine also automatically calls `MatSetTransposeNullSpace()`. 8872 8873 The user should call `MatNullSpaceDestroy()`. 8874 8875 .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatNullSpaceCreate()`, `MatSetNearNullSpace()`, `MatGetNullSpace()`, `MatSetTransposeNullSpace()`, `MatGetTransposeNullSpace()`, `MatNullSpaceRemove()`, 8876 `KSPSetPCSide()` 8877 @*/ 8878 PetscErrorCode MatSetNullSpace(Mat mat, MatNullSpace nullsp) 8879 { 8880 PetscFunctionBegin; 8881 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 8882 if (nullsp) PetscValidHeaderSpecific(nullsp, MAT_NULLSPACE_CLASSID, 2); 8883 if (nullsp) PetscCall(PetscObjectReference((PetscObject)nullsp)); 8884 PetscCall(MatNullSpaceDestroy(&mat->nullsp)); 8885 mat->nullsp = nullsp; 8886 if (mat->symmetric == PETSC_BOOL3_TRUE) PetscCall(MatSetTransposeNullSpace(mat, nullsp)); 8887 PetscFunctionReturn(PETSC_SUCCESS); 8888 } 8889 8890 /*@ 8891 MatGetTransposeNullSpace - retrieves the null space of the transpose of a matrix. 8892 8893 Logically Collective 8894 8895 Input Parameters: 8896 + mat - the matrix 8897 - nullsp - the null space object 8898 8899 Level: developer 8900 8901 .seealso: [](ch_matrices), `Mat`, `MatNullSpace`, `MatCreate()`, `MatNullSpaceCreate()`, `MatSetNearNullSpace()`, `MatSetTransposeNullSpace()`, `MatSetNullSpace()`, `MatGetNullSpace()` 8902 @*/ 8903 PetscErrorCode MatGetTransposeNullSpace(Mat mat, MatNullSpace *nullsp) 8904 { 8905 PetscFunctionBegin; 8906 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 8907 PetscValidType(mat, 1); 8908 PetscAssertPointer(nullsp, 2); 8909 *nullsp = (mat->symmetric == PETSC_BOOL3_TRUE && !mat->transnullsp) ? mat->nullsp : mat->transnullsp; 8910 PetscFunctionReturn(PETSC_SUCCESS); 8911 } 8912 8913 /*@ 8914 MatSetTransposeNullSpace - attaches the null space of a transpose of a matrix to the matrix 8915 8916 Logically Collective 8917 8918 Input Parameters: 8919 + mat - the matrix 8920 - nullsp - the null space object 8921 8922 Level: advanced 8923 8924 Notes: 8925 This allows solving singular linear systems defined by the transpose of the matrix using `KSP` solvers with left preconditioning. 8926 8927 See `MatSetNullSpace()` 8928 8929 .seealso: [](ch_matrices), `Mat`, `MatNullSpace`, `MatCreate()`, `MatNullSpaceCreate()`, `MatSetNearNullSpace()`, `MatGetNullSpace()`, `MatSetNullSpace()`, `MatGetTransposeNullSpace()`, `MatNullSpaceRemove()`, `KSPSetPCSide()` 8930 @*/ 8931 PetscErrorCode MatSetTransposeNullSpace(Mat mat, MatNullSpace nullsp) 8932 { 8933 PetscFunctionBegin; 8934 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 8935 if (nullsp) PetscValidHeaderSpecific(nullsp, MAT_NULLSPACE_CLASSID, 2); 8936 if (nullsp) PetscCall(PetscObjectReference((PetscObject)nullsp)); 8937 PetscCall(MatNullSpaceDestroy(&mat->transnullsp)); 8938 mat->transnullsp = nullsp; 8939 PetscFunctionReturn(PETSC_SUCCESS); 8940 } 8941 8942 /*@ 8943 MatSetNearNullSpace - attaches a null space to a matrix, which is often the null space (rigid body modes) of the operator without boundary conditions 8944 This null space will be used to provide near null space vectors to a multigrid preconditioner built from this matrix. 8945 8946 Logically Collective 8947 8948 Input Parameters: 8949 + mat - the matrix 8950 - nullsp - the null space object 8951 8952 Level: advanced 8953 8954 Notes: 8955 Overwrites any previous near null space that may have been attached 8956 8957 You can remove the null space by calling this routine with an `nullsp` of `NULL` 8958 8959 .seealso: [](ch_matrices), `Mat`, `MatNullSpace`, `MatCreate()`, `MatNullSpaceCreate()`, `MatSetNullSpace()`, `MatNullSpaceCreateRigidBody()`, `MatGetNearNullSpace()` 8960 @*/ 8961 PetscErrorCode MatSetNearNullSpace(Mat mat, MatNullSpace nullsp) 8962 { 8963 PetscFunctionBegin; 8964 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 8965 PetscValidType(mat, 1); 8966 if (nullsp) PetscValidHeaderSpecific(nullsp, MAT_NULLSPACE_CLASSID, 2); 8967 MatCheckPreallocated(mat, 1); 8968 if (nullsp) PetscCall(PetscObjectReference((PetscObject)nullsp)); 8969 PetscCall(MatNullSpaceDestroy(&mat->nearnullsp)); 8970 mat->nearnullsp = nullsp; 8971 PetscFunctionReturn(PETSC_SUCCESS); 8972 } 8973 8974 /*@ 8975 MatGetNearNullSpace - Get null space attached with `MatSetNearNullSpace()` 8976 8977 Not Collective 8978 8979 Input Parameter: 8980 . mat - the matrix 8981 8982 Output Parameter: 8983 . nullsp - the null space object, `NULL` if not set 8984 8985 Level: advanced 8986 8987 .seealso: [](ch_matrices), `Mat`, `MatNullSpace`, `MatSetNearNullSpace()`, `MatGetNullSpace()`, `MatNullSpaceCreate()` 8988 @*/ 8989 PetscErrorCode MatGetNearNullSpace(Mat mat, MatNullSpace *nullsp) 8990 { 8991 PetscFunctionBegin; 8992 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 8993 PetscValidType(mat, 1); 8994 PetscAssertPointer(nullsp, 2); 8995 MatCheckPreallocated(mat, 1); 8996 *nullsp = mat->nearnullsp; 8997 PetscFunctionReturn(PETSC_SUCCESS); 8998 } 8999 9000 /*@C 9001 MatICCFactor - Performs in-place incomplete Cholesky factorization of matrix. 9002 9003 Collective 9004 9005 Input Parameters: 9006 + mat - the matrix 9007 . row - row/column permutation 9008 - info - information on desired factorization process 9009 9010 Level: developer 9011 9012 Notes: 9013 Probably really in-place only when level of fill is zero, otherwise allocates 9014 new space to store factored matrix and deletes previous memory. 9015 9016 Most users should employ the `KSP` interface for linear solvers 9017 instead of working directly with matrix algebra routines such as this. 9018 See, e.g., `KSPCreate()`. 9019 9020 Developer Note: 9021 The Fortran interface is not autogenerated as the 9022 interface definition cannot be generated correctly [due to `MatFactorInfo`] 9023 9024 .seealso: [](ch_matrices), `Mat`, `MatFactorInfo`, `MatGetFactor()`, `MatICCFactorSymbolic()`, `MatLUFactorNumeric()`, `MatCholeskyFactor()` 9025 @*/ 9026 PetscErrorCode MatICCFactor(Mat mat, IS row, const MatFactorInfo *info) 9027 { 9028 PetscFunctionBegin; 9029 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 9030 PetscValidType(mat, 1); 9031 if (row) PetscValidHeaderSpecific(row, IS_CLASSID, 2); 9032 PetscAssertPointer(info, 3); 9033 PetscCheck(mat->rmap->N == mat->cmap->N, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONG, "matrix must be square"); 9034 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 9035 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 9036 MatCheckPreallocated(mat, 1); 9037 PetscUseTypeMethod(mat, iccfactor, row, info); 9038 PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 9039 PetscFunctionReturn(PETSC_SUCCESS); 9040 } 9041 9042 /*@ 9043 MatDiagonalScaleLocal - Scales columns of a matrix given the scaling values including the 9044 ghosted ones. 9045 9046 Not Collective 9047 9048 Input Parameters: 9049 + mat - the matrix 9050 - diag - the diagonal values, including ghost ones 9051 9052 Level: developer 9053 9054 Notes: 9055 Works only for `MATMPIAIJ` and `MATMPIBAIJ` matrices 9056 9057 This allows one to avoid during communication to perform the scaling that must be done with `MatDiagonalScale()` 9058 9059 .seealso: [](ch_matrices), `Mat`, `MatDiagonalScale()` 9060 @*/ 9061 PetscErrorCode MatDiagonalScaleLocal(Mat mat, Vec diag) 9062 { 9063 PetscMPIInt size; 9064 9065 PetscFunctionBegin; 9066 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 9067 PetscValidHeaderSpecific(diag, VEC_CLASSID, 2); 9068 PetscValidType(mat, 1); 9069 9070 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Matrix must be already assembled"); 9071 PetscCall(PetscLogEventBegin(MAT_Scale, mat, 0, 0, 0)); 9072 PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)mat), &size)); 9073 if (size == 1) { 9074 PetscInt n, m; 9075 PetscCall(VecGetSize(diag, &n)); 9076 PetscCall(MatGetSize(mat, NULL, &m)); 9077 PetscCheck(m == n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only supported for sequential matrices when no ghost points/periodic conditions"); 9078 PetscCall(MatDiagonalScale(mat, NULL, diag)); 9079 } else { 9080 PetscUseMethod(mat, "MatDiagonalScaleLocal_C", (Mat, Vec), (mat, diag)); 9081 } 9082 PetscCall(PetscLogEventEnd(MAT_Scale, mat, 0, 0, 0)); 9083 PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 9084 PetscFunctionReturn(PETSC_SUCCESS); 9085 } 9086 9087 /*@ 9088 MatGetInertia - Gets the inertia from a factored matrix 9089 9090 Collective 9091 9092 Input Parameter: 9093 . mat - the matrix 9094 9095 Output Parameters: 9096 + nneg - number of negative eigenvalues 9097 . nzero - number of zero eigenvalues 9098 - npos - number of positive eigenvalues 9099 9100 Level: advanced 9101 9102 Note: 9103 Matrix must have been factored by `MatCholeskyFactor()` 9104 9105 .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatCholeskyFactor()` 9106 @*/ 9107 PetscErrorCode MatGetInertia(Mat mat, PetscInt *nneg, PetscInt *nzero, PetscInt *npos) 9108 { 9109 PetscFunctionBegin; 9110 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 9111 PetscValidType(mat, 1); 9112 PetscCheck(mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Unfactored matrix"); 9113 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Numeric factor mat is not assembled"); 9114 PetscUseTypeMethod(mat, getinertia, nneg, nzero, npos); 9115 PetscFunctionReturn(PETSC_SUCCESS); 9116 } 9117 9118 /*@C 9119 MatSolves - Solves $A x = b$, given a factored matrix, for a collection of vectors 9120 9121 Neighbor-wise Collective 9122 9123 Input Parameters: 9124 + mat - the factored matrix obtained with `MatGetFactor()` 9125 - b - the right-hand-side vectors 9126 9127 Output Parameter: 9128 . x - the result vectors 9129 9130 Level: developer 9131 9132 Note: 9133 The vectors `b` and `x` cannot be the same. I.e., one cannot 9134 call `MatSolves`(A,x,x). 9135 9136 .seealso: [](ch_matrices), `Mat`, `Vecs`, `MatSolveAdd()`, `MatSolveTranspose()`, `MatSolveTransposeAdd()`, `MatSolve()` 9137 @*/ 9138 PetscErrorCode MatSolves(Mat mat, Vecs b, Vecs x) 9139 { 9140 PetscFunctionBegin; 9141 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 9142 PetscValidType(mat, 1); 9143 PetscCheck(x != b, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_IDN, "x and b must be different vectors"); 9144 PetscCheck(mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Unfactored matrix"); 9145 if (!mat->rmap->N && !mat->cmap->N) PetscFunctionReturn(PETSC_SUCCESS); 9146 9147 MatCheckPreallocated(mat, 1); 9148 PetscCall(PetscLogEventBegin(MAT_Solves, mat, 0, 0, 0)); 9149 PetscUseTypeMethod(mat, solves, b, x); 9150 PetscCall(PetscLogEventEnd(MAT_Solves, mat, 0, 0, 0)); 9151 PetscFunctionReturn(PETSC_SUCCESS); 9152 } 9153 9154 /*@ 9155 MatIsSymmetric - Test whether a matrix is symmetric 9156 9157 Collective 9158 9159 Input Parameters: 9160 + A - the matrix to test 9161 - tol - difference between value and its transpose less than this amount counts as equal (use 0.0 for exact transpose) 9162 9163 Output Parameter: 9164 . flg - the result 9165 9166 Level: intermediate 9167 9168 Notes: 9169 For real numbers `MatIsSymmetric()` and `MatIsHermitian()` return identical results 9170 9171 If the matrix does not yet know if it is symmetric or not this can be an expensive operation, also available `MatIsSymmetricKnown()` 9172 9173 One can declare that a matrix is symmetric with `MatSetOption`(mat,`MAT_SYMMETRIC`,`PETSC_TRUE`) and if it is known to remain symmetric 9174 after changes to the matrices values one can call `MatSetOption`(mat,`MAT_SYMMETRY_ETERNAL`,`PETSC_TRUE`) 9175 9176 .seealso: [](ch_matrices), `Mat`, `MatTranspose()`, `MatIsTranspose()`, `MatIsHermitian()`, `MatIsStructurallySymmetric()`, `MatSetOption()`, `MatIsSymmetricKnown()`, 9177 `MAT_SYMMETRIC`, `MAT_SYMMETRY_ETERNAL` 9178 @*/ 9179 PetscErrorCode MatIsSymmetric(Mat A, PetscReal tol, PetscBool *flg) 9180 { 9181 PetscFunctionBegin; 9182 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 9183 PetscAssertPointer(flg, 3); 9184 9185 if (A->symmetric == PETSC_BOOL3_TRUE) *flg = PETSC_TRUE; 9186 else if (A->symmetric == PETSC_BOOL3_FALSE) *flg = PETSC_FALSE; 9187 else { 9188 PetscUseTypeMethod(A, issymmetric, tol, flg); 9189 if (!tol) PetscCall(MatSetOption(A, MAT_SYMMETRIC, *flg)); 9190 } 9191 PetscFunctionReturn(PETSC_SUCCESS); 9192 } 9193 9194 /*@ 9195 MatIsHermitian - Test whether a matrix is Hermitian 9196 9197 Collective 9198 9199 Input Parameters: 9200 + A - the matrix to test 9201 - tol - difference between value and its transpose less than this amount counts as equal (use 0.0 for exact Hermitian) 9202 9203 Output Parameter: 9204 . flg - the result 9205 9206 Level: intermediate 9207 9208 Notes: 9209 For real numbers `MatIsSymmetric()` and `MatIsHermitian()` return identical results 9210 9211 If the matrix does not yet know if it is Hermitian or not this can be an expensive operation, also available `MatIsHermitianKnown()` 9212 9213 One can declare that a matrix is Hermitian with `MatSetOption`(mat,`MAT_HERMITIAN`,`PETSC_TRUE`) and if it is known to remain Hermitian 9214 after changes to the matrices values one can call `MatSetOption`(mat,`MAT_SYMEMTRY_ETERNAL`,`PETSC_TRUE`) 9215 9216 .seealso: [](ch_matrices), `Mat`, `MatTranspose()`, `MatIsTranspose()`, `MatIsHermitianKnown()`, `MatIsStructurallySymmetric()`, `MatSetOption()`, 9217 `MatIsSymmetricKnown()`, `MatIsSymmetric()`, `MAT_HERMITIAN`, `MAT_SYMMETRY_ETERNAL` 9218 @*/ 9219 PetscErrorCode MatIsHermitian(Mat A, PetscReal tol, PetscBool *flg) 9220 { 9221 PetscFunctionBegin; 9222 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 9223 PetscAssertPointer(flg, 3); 9224 9225 if (A->hermitian == PETSC_BOOL3_TRUE) *flg = PETSC_TRUE; 9226 else if (A->hermitian == PETSC_BOOL3_FALSE) *flg = PETSC_FALSE; 9227 else { 9228 PetscUseTypeMethod(A, ishermitian, tol, flg); 9229 if (!tol) PetscCall(MatSetOption(A, MAT_HERMITIAN, *flg)); 9230 } 9231 PetscFunctionReturn(PETSC_SUCCESS); 9232 } 9233 9234 /*@ 9235 MatIsSymmetricKnown - Checks if a matrix knows if it is symmetric or not and its symmetric state 9236 9237 Not Collective 9238 9239 Input Parameter: 9240 . A - the matrix to check 9241 9242 Output Parameters: 9243 + set - `PETSC_TRUE` if the matrix knows its symmetry state (this tells you if the next flag is valid) 9244 - flg - the result (only valid if set is `PETSC_TRUE`) 9245 9246 Level: advanced 9247 9248 Notes: 9249 Does not check the matrix values directly, so this may return unknown (set = `PETSC_FALSE`). Use `MatIsSymmetric()` 9250 if you want it explicitly checked 9251 9252 One can declare that a matrix is symmetric with `MatSetOption`(mat,`MAT_SYMMETRIC`,`PETSC_TRUE`) and if it is known to remain symmetric 9253 after changes to the matrices values one can call `MatSetOption`(mat,`MAT_SYMMETRY_ETERNAL`,`PETSC_TRUE`) 9254 9255 .seealso: [](ch_matrices), `Mat`, `MAT_SYMMETRY_ETERNAL`, `MatTranspose()`, `MatIsTranspose()`, `MatIsHermitian()`, `MatIsStructurallySymmetric()`, `MatSetOption()`, `MatIsSymmetric()`, `MatIsHermitianKnown()` 9256 @*/ 9257 PetscErrorCode MatIsSymmetricKnown(Mat A, PetscBool *set, PetscBool *flg) 9258 { 9259 PetscFunctionBegin; 9260 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 9261 PetscAssertPointer(set, 2); 9262 PetscAssertPointer(flg, 3); 9263 if (A->symmetric != PETSC_BOOL3_UNKNOWN) { 9264 *set = PETSC_TRUE; 9265 *flg = PetscBool3ToBool(A->symmetric); 9266 } else { 9267 *set = PETSC_FALSE; 9268 } 9269 PetscFunctionReturn(PETSC_SUCCESS); 9270 } 9271 9272 /*@ 9273 MatIsSPDKnown - Checks if a matrix knows if it is symmetric positive definite or not and its symmetric positive definite state 9274 9275 Not Collective 9276 9277 Input Parameter: 9278 . A - the matrix to check 9279 9280 Output Parameters: 9281 + set - `PETSC_TRUE` if the matrix knows its symmetric positive definite state (this tells you if the next flag is valid) 9282 - flg - the result (only valid if set is `PETSC_TRUE`) 9283 9284 Level: advanced 9285 9286 Notes: 9287 Does not check the matrix values directly, so this may return unknown (set = `PETSC_FALSE`). 9288 9289 One can declare that a matrix is SPD with `MatSetOption`(mat,`MAT_SPD`,`PETSC_TRUE`) and if it is known to remain SPD 9290 after changes to the matrices values one can call `MatSetOption`(mat,`MAT_SPD_ETERNAL`,`PETSC_TRUE`) 9291 9292 .seealso: [](ch_matrices), `Mat`, `MAT_SPD_ETERNAL`, `MAT_SPD`, `MatTranspose()`, `MatIsTranspose()`, `MatIsHermitian()`, `MatIsStructurallySymmetric()`, `MatSetOption()`, `MatIsSymmetric()`, `MatIsHermitianKnown()` 9293 @*/ 9294 PetscErrorCode MatIsSPDKnown(Mat A, PetscBool *set, PetscBool *flg) 9295 { 9296 PetscFunctionBegin; 9297 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 9298 PetscAssertPointer(set, 2); 9299 PetscAssertPointer(flg, 3); 9300 if (A->spd != PETSC_BOOL3_UNKNOWN) { 9301 *set = PETSC_TRUE; 9302 *flg = PetscBool3ToBool(A->spd); 9303 } else { 9304 *set = PETSC_FALSE; 9305 } 9306 PetscFunctionReturn(PETSC_SUCCESS); 9307 } 9308 9309 /*@ 9310 MatIsHermitianKnown - Checks if a matrix knows if it is Hermitian or not and its Hermitian state 9311 9312 Not Collective 9313 9314 Input Parameter: 9315 . A - the matrix to check 9316 9317 Output Parameters: 9318 + set - `PETSC_TRUE` if the matrix knows its Hermitian state (this tells you if the next flag is valid) 9319 - flg - the result (only valid if set is `PETSC_TRUE`) 9320 9321 Level: advanced 9322 9323 Notes: 9324 Does not check the matrix values directly, so this may return unknown (set = `PETSC_FALSE`). Use `MatIsHermitian()` 9325 if you want it explicitly checked 9326 9327 One can declare that a matrix is Hermitian with `MatSetOption`(mat,`MAT_HERMITIAN`,`PETSC_TRUE`) and if it is known to remain Hermitian 9328 after changes to the matrices values one can call `MatSetOption`(mat,`MAT_SYMMETRY_ETERNAL`,`PETSC_TRUE`) 9329 9330 .seealso: [](ch_matrices), `Mat`, `MAT_SYMMETRY_ETERNAL`, `MAT_HERMITIAN`, `MatTranspose()`, `MatIsTranspose()`, `MatIsHermitian()`, `MatIsStructurallySymmetric()`, `MatSetOption()`, `MatIsSymmetric()` 9331 @*/ 9332 PetscErrorCode MatIsHermitianKnown(Mat A, PetscBool *set, PetscBool *flg) 9333 { 9334 PetscFunctionBegin; 9335 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 9336 PetscAssertPointer(set, 2); 9337 PetscAssertPointer(flg, 3); 9338 if (A->hermitian != PETSC_BOOL3_UNKNOWN) { 9339 *set = PETSC_TRUE; 9340 *flg = PetscBool3ToBool(A->hermitian); 9341 } else { 9342 *set = PETSC_FALSE; 9343 } 9344 PetscFunctionReturn(PETSC_SUCCESS); 9345 } 9346 9347 /*@ 9348 MatIsStructurallySymmetric - Test whether a matrix is structurally symmetric 9349 9350 Collective 9351 9352 Input Parameter: 9353 . A - the matrix to test 9354 9355 Output Parameter: 9356 . flg - the result 9357 9358 Level: intermediate 9359 9360 Notes: 9361 If the matrix does yet know it is structurally symmetric this can be an expensive operation, also available `MatIsStructurallySymmetricKnown()` 9362 9363 One can declare that a matrix is structurally symmetric with `MatSetOption`(mat,`MAT_STRUCTURALLY_SYMMETRIC`,`PETSC_TRUE`) and if it is known to remain structurally 9364 symmetric after changes to the matrices values one can call `MatSetOption`(mat,`MAT_STRUCTURAL_SYMMETRY_ETERNAL`,`PETSC_TRUE`) 9365 9366 .seealso: [](ch_matrices), `Mat`, `MAT_STRUCTURALLY_SYMMETRIC`, `MAT_STRUCTURAL_SYMMETRY_ETERNAL`, `MatTranspose()`, `MatIsTranspose()`, `MatIsHermitian()`, `MatIsSymmetric()`, `MatSetOption()`, `MatIsStructurallySymmetricKnown()` 9367 @*/ 9368 PetscErrorCode MatIsStructurallySymmetric(Mat A, PetscBool *flg) 9369 { 9370 PetscFunctionBegin; 9371 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 9372 PetscAssertPointer(flg, 2); 9373 if (A->structurally_symmetric != PETSC_BOOL3_UNKNOWN) { 9374 *flg = PetscBool3ToBool(A->structurally_symmetric); 9375 } else { 9376 PetscUseTypeMethod(A, isstructurallysymmetric, flg); 9377 PetscCall(MatSetOption(A, MAT_STRUCTURALLY_SYMMETRIC, *flg)); 9378 } 9379 PetscFunctionReturn(PETSC_SUCCESS); 9380 } 9381 9382 /*@ 9383 MatIsStructurallySymmetricKnown - Checks if a matrix knows if it is structurally symmetric or not and its structurally symmetric state 9384 9385 Not Collective 9386 9387 Input Parameter: 9388 . A - the matrix to check 9389 9390 Output Parameters: 9391 + set - PETSC_TRUE if the matrix knows its structurally symmetric state (this tells you if the next flag is valid) 9392 - flg - the result (only valid if set is PETSC_TRUE) 9393 9394 Level: advanced 9395 9396 Notes: 9397 One can declare that a matrix is structurally symmetric with `MatSetOption`(mat,`MAT_STRUCTURALLY_SYMMETRIC`,`PETSC_TRUE`) and if it is known to remain structurally 9398 symmetric after changes to the matrices values one can call `MatSetOption`(mat,`MAT_STRUCTURAL_SYMMETRY_ETERNAL`,`PETSC_TRUE`) 9399 9400 Use `MatIsStructurallySymmetric()` to explicitly check if a matrix is structurally symmetric (this is an expensive operation) 9401 9402 .seealso: [](ch_matrices), `Mat`, `MAT_STRUCTURALLY_SYMMETRIC`, `MatTranspose()`, `MatIsTranspose()`, `MatIsHermitian()`, `MatIsStructurallySymmetric()`, `MatSetOption()`, `MatIsSymmetric()`, `MatIsHermitianKnown()` 9403 @*/ 9404 PetscErrorCode MatIsStructurallySymmetricKnown(Mat A, PetscBool *set, PetscBool *flg) 9405 { 9406 PetscFunctionBegin; 9407 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 9408 PetscAssertPointer(set, 2); 9409 PetscAssertPointer(flg, 3); 9410 if (A->structurally_symmetric != PETSC_BOOL3_UNKNOWN) { 9411 *set = PETSC_TRUE; 9412 *flg = PetscBool3ToBool(A->structurally_symmetric); 9413 } else { 9414 *set = PETSC_FALSE; 9415 } 9416 PetscFunctionReturn(PETSC_SUCCESS); 9417 } 9418 9419 /*@ 9420 MatStashGetInfo - Gets how many values are currently in the matrix stash, i.e. need 9421 to be communicated to other processors during the `MatAssemblyBegin()`/`MatAssemblyEnd()` process 9422 9423 Not Collective 9424 9425 Input Parameter: 9426 . mat - the matrix 9427 9428 Output Parameters: 9429 + nstash - the size of the stash 9430 . reallocs - the number of additional mallocs incurred. 9431 . bnstash - the size of the block stash 9432 - breallocs - the number of additional mallocs incurred.in the block stash 9433 9434 Level: advanced 9435 9436 .seealso: [](ch_matrices), `MatAssemblyBegin()`, `MatAssemblyEnd()`, `Mat`, `MatStashSetInitialSize()` 9437 @*/ 9438 PetscErrorCode MatStashGetInfo(Mat mat, PetscInt *nstash, PetscInt *reallocs, PetscInt *bnstash, PetscInt *breallocs) 9439 { 9440 PetscFunctionBegin; 9441 PetscCall(MatStashGetInfo_Private(&mat->stash, nstash, reallocs)); 9442 PetscCall(MatStashGetInfo_Private(&mat->bstash, bnstash, breallocs)); 9443 PetscFunctionReturn(PETSC_SUCCESS); 9444 } 9445 9446 /*@C 9447 MatCreateVecs - Get vector(s) compatible with the matrix, i.e. with the same 9448 parallel layout, `PetscLayout` for rows and columns 9449 9450 Collective 9451 9452 Input Parameter: 9453 . mat - the matrix 9454 9455 Output Parameters: 9456 + right - (optional) vector that the matrix can be multiplied against 9457 - left - (optional) vector that the matrix vector product can be stored in 9458 9459 Level: advanced 9460 9461 Notes: 9462 The blocksize of the returned vectors is determined by the row and column block sizes set with `MatSetBlockSizes()` or the single blocksize (same for both) set by `MatSetBlockSize()`. 9463 9464 These are new vectors which are not owned by the mat, they should be destroyed in `VecDestroy()` when no longer needed 9465 9466 .seealso: [](ch_matrices), `Mat`, `Vec`, `VecCreate()`, `VecDestroy()`, `DMCreateGlobalVector()` 9467 @*/ 9468 PetscErrorCode MatCreateVecs(Mat mat, Vec *right, Vec *left) 9469 { 9470 PetscFunctionBegin; 9471 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 9472 PetscValidType(mat, 1); 9473 if (mat->ops->getvecs) { 9474 PetscUseTypeMethod(mat, getvecs, right, left); 9475 } else { 9476 if (right) { 9477 PetscCheck(mat->cmap->n >= 0, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "PetscLayout for columns not yet setup"); 9478 PetscCall(VecCreateWithLayout_Private(mat->cmap, right)); 9479 PetscCall(VecSetType(*right, mat->defaultvectype)); 9480 #if defined(PETSC_HAVE_VIENNACL) || defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 9481 if (mat->boundtocpu && mat->bindingpropagates) { 9482 PetscCall(VecSetBindingPropagates(*right, PETSC_TRUE)); 9483 PetscCall(VecBindToCPU(*right, PETSC_TRUE)); 9484 } 9485 #endif 9486 } 9487 if (left) { 9488 PetscCheck(mat->rmap->n >= 0, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "PetscLayout for rows not yet setup"); 9489 PetscCall(VecCreateWithLayout_Private(mat->rmap, left)); 9490 PetscCall(VecSetType(*left, mat->defaultvectype)); 9491 #if defined(PETSC_HAVE_VIENNACL) || defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 9492 if (mat->boundtocpu && mat->bindingpropagates) { 9493 PetscCall(VecSetBindingPropagates(*left, PETSC_TRUE)); 9494 PetscCall(VecBindToCPU(*left, PETSC_TRUE)); 9495 } 9496 #endif 9497 } 9498 } 9499 PetscFunctionReturn(PETSC_SUCCESS); 9500 } 9501 9502 /*@C 9503 MatFactorInfoInitialize - Initializes a `MatFactorInfo` data structure 9504 with default values. 9505 9506 Not Collective 9507 9508 Input Parameter: 9509 . info - the `MatFactorInfo` data structure 9510 9511 Level: developer 9512 9513 Notes: 9514 The solvers are generally used through the `KSP` and `PC` objects, for example 9515 `PCLU`, `PCILU`, `PCCHOLESKY`, `PCICC` 9516 9517 Once the data structure is initialized one may change certain entries as desired for the particular factorization to be performed 9518 9519 Developer Note: 9520 The Fortran interface is not autogenerated as the 9521 interface definition cannot be generated correctly [due to `MatFactorInfo`] 9522 9523 .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorInfo` 9524 @*/ 9525 PetscErrorCode MatFactorInfoInitialize(MatFactorInfo *info) 9526 { 9527 PetscFunctionBegin; 9528 PetscCall(PetscMemzero(info, sizeof(MatFactorInfo))); 9529 PetscFunctionReturn(PETSC_SUCCESS); 9530 } 9531 9532 /*@ 9533 MatFactorSetSchurIS - Set indices corresponding to the Schur complement you wish to have computed 9534 9535 Collective 9536 9537 Input Parameters: 9538 + mat - the factored matrix 9539 - is - the index set defining the Schur indices (0-based) 9540 9541 Level: advanced 9542 9543 Notes: 9544 Call `MatFactorSolveSchurComplement()` or `MatFactorSolveSchurComplementTranspose()` after this call to solve a Schur complement system. 9545 9546 You can call `MatFactorGetSchurComplement()` or `MatFactorCreateSchurComplement()` after this call. 9547 9548 This functionality is only supported for `MATSOLVERMUMPS` and `MATSOLVERMKL_PARDISO` 9549 9550 .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorGetSchurComplement()`, `MatFactorRestoreSchurComplement()`, `MatFactorCreateSchurComplement()`, `MatFactorSolveSchurComplement()`, 9551 `MatFactorSolveSchurComplementTranspose()`, `MATSOLVERMUMPS`, `MATSOLVERMKL_PARDISO` 9552 @*/ 9553 PetscErrorCode MatFactorSetSchurIS(Mat mat, IS is) 9554 { 9555 PetscErrorCode (*f)(Mat, IS); 9556 9557 PetscFunctionBegin; 9558 PetscValidType(mat, 1); 9559 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 9560 PetscValidType(is, 2); 9561 PetscValidHeaderSpecific(is, IS_CLASSID, 2); 9562 PetscCheckSameComm(mat, 1, is, 2); 9563 PetscCheck(mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Only for factored matrix"); 9564 PetscCall(PetscObjectQueryFunction((PetscObject)mat, "MatFactorSetSchurIS_C", &f)); 9565 PetscCheck(f, PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "The selected MatSolverType does not support Schur complement computation. You should use MATSOLVERMUMPS or MATSOLVERMKL_PARDISO"); 9566 PetscCall(MatDestroy(&mat->schur)); 9567 PetscCall((*f)(mat, is)); 9568 PetscCheck(mat->schur, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Schur complement has not been created"); 9569 PetscFunctionReturn(PETSC_SUCCESS); 9570 } 9571 9572 /*@ 9573 MatFactorCreateSchurComplement - Create a Schur complement matrix object using Schur data computed during the factorization step 9574 9575 Logically Collective 9576 9577 Input Parameters: 9578 + F - the factored matrix obtained by calling `MatGetFactor()` 9579 . S - location where to return the Schur complement, can be `NULL` 9580 - status - the status of the Schur complement matrix, can be `NULL` 9581 9582 Level: advanced 9583 9584 Notes: 9585 You must call `MatFactorSetSchurIS()` before calling this routine. 9586 9587 This functionality is only supported for `MATSOLVERMUMPS` and `MATSOLVERMKL_PARDISO` 9588 9589 The routine provides a copy of the Schur matrix stored within the solver data structures. 9590 The caller must destroy the object when it is no longer needed. 9591 If `MatFactorInvertSchurComplement()` has been called, the routine gets back the inverse. 9592 9593 Use `MatFactorGetSchurComplement()` to get access to the Schur complement matrix inside the factored matrix instead of making a copy of it (which this function does) 9594 9595 See `MatCreateSchurComplement()` or `MatGetSchurComplement()` for ways to create virtual or approximate Schur complements. 9596 9597 Developer Note: 9598 The reason this routine exists is because the representation of the Schur complement within the factor matrix may be different than a standard PETSc 9599 matrix representation and we normally do not want to use the time or memory to make a copy as a regular PETSc matrix. 9600 9601 .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorSetSchurIS()`, `MatFactorGetSchurComplement()`, `MatFactorSchurStatus`, `MATSOLVERMUMPS`, `MATSOLVERMKL_PARDISO` 9602 @*/ 9603 PetscErrorCode MatFactorCreateSchurComplement(Mat F, Mat *S, MatFactorSchurStatus *status) 9604 { 9605 PetscFunctionBegin; 9606 PetscValidHeaderSpecific(F, MAT_CLASSID, 1); 9607 if (S) PetscAssertPointer(S, 2); 9608 if (status) PetscAssertPointer(status, 3); 9609 if (S) { 9610 PetscErrorCode (*f)(Mat, Mat *); 9611 9612 PetscCall(PetscObjectQueryFunction((PetscObject)F, "MatFactorCreateSchurComplement_C", &f)); 9613 if (f) { 9614 PetscCall((*f)(F, S)); 9615 } else { 9616 PetscCall(MatDuplicate(F->schur, MAT_COPY_VALUES, S)); 9617 } 9618 } 9619 if (status) *status = F->schur_status; 9620 PetscFunctionReturn(PETSC_SUCCESS); 9621 } 9622 9623 /*@ 9624 MatFactorGetSchurComplement - Gets access to a Schur complement matrix using the current Schur data within a factored matrix 9625 9626 Logically Collective 9627 9628 Input Parameters: 9629 + F - the factored matrix obtained by calling `MatGetFactor()` 9630 . S - location where to return the Schur complement, can be `NULL` 9631 - status - the status of the Schur complement matrix, can be `NULL` 9632 9633 Level: advanced 9634 9635 Notes: 9636 You must call `MatFactorSetSchurIS()` before calling this routine. 9637 9638 Schur complement mode is currently implemented for sequential matrices with factor type of `MATSOLVERMUMPS` 9639 9640 The routine returns a the Schur Complement stored within the data structures of the solver. 9641 9642 If `MatFactorInvertSchurComplement()` has previously been called, the returned matrix is actually the inverse of the Schur complement. 9643 9644 The returned matrix should not be destroyed; the caller should call `MatFactorRestoreSchurComplement()` when the object is no longer needed. 9645 9646 Use `MatFactorCreateSchurComplement()` to create a copy of the Schur complement matrix that is within a factored matrix 9647 9648 See `MatCreateSchurComplement()` or `MatGetSchurComplement()` for ways to create virtual or approximate Schur complements. 9649 9650 .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorSetSchurIS()`, `MatFactorRestoreSchurComplement()`, `MatFactorCreateSchurComplement()`, `MatFactorSchurStatus` 9651 @*/ 9652 PetscErrorCode MatFactorGetSchurComplement(Mat F, Mat *S, MatFactorSchurStatus *status) 9653 { 9654 PetscFunctionBegin; 9655 PetscValidHeaderSpecific(F, MAT_CLASSID, 1); 9656 if (S) { 9657 PetscAssertPointer(S, 2); 9658 *S = F->schur; 9659 } 9660 if (status) { 9661 PetscAssertPointer(status, 3); 9662 *status = F->schur_status; 9663 } 9664 PetscFunctionReturn(PETSC_SUCCESS); 9665 } 9666 9667 static PetscErrorCode MatFactorUpdateSchurStatus_Private(Mat F) 9668 { 9669 Mat S = F->schur; 9670 9671 PetscFunctionBegin; 9672 switch (F->schur_status) { 9673 case MAT_FACTOR_SCHUR_UNFACTORED: // fall-through 9674 case MAT_FACTOR_SCHUR_INVERTED: 9675 if (S) { 9676 S->ops->solve = NULL; 9677 S->ops->matsolve = NULL; 9678 S->ops->solvetranspose = NULL; 9679 S->ops->matsolvetranspose = NULL; 9680 S->ops->solveadd = NULL; 9681 S->ops->solvetransposeadd = NULL; 9682 S->factortype = MAT_FACTOR_NONE; 9683 PetscCall(PetscFree(S->solvertype)); 9684 } 9685 case MAT_FACTOR_SCHUR_FACTORED: // fall-through 9686 break; 9687 default: 9688 SETERRQ(PetscObjectComm((PetscObject)F), PETSC_ERR_SUP, "Unhandled MatFactorSchurStatus %d", F->schur_status); 9689 } 9690 PetscFunctionReturn(PETSC_SUCCESS); 9691 } 9692 9693 /*@ 9694 MatFactorRestoreSchurComplement - Restore the Schur complement matrix object obtained from a call to `MatFactorGetSchurComplement()` 9695 9696 Logically Collective 9697 9698 Input Parameters: 9699 + F - the factored matrix obtained by calling `MatGetFactor()` 9700 . S - location where the Schur complement is stored 9701 - status - the status of the Schur complement matrix (see `MatFactorSchurStatus`) 9702 9703 Level: advanced 9704 9705 .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorSetSchurIS()`, `MatFactorCreateSchurComplement()`, `MatFactorSchurStatus` 9706 @*/ 9707 PetscErrorCode MatFactorRestoreSchurComplement(Mat F, Mat *S, MatFactorSchurStatus status) 9708 { 9709 PetscFunctionBegin; 9710 PetscValidHeaderSpecific(F, MAT_CLASSID, 1); 9711 if (S) { 9712 PetscValidHeaderSpecific(*S, MAT_CLASSID, 2); 9713 *S = NULL; 9714 } 9715 F->schur_status = status; 9716 PetscCall(MatFactorUpdateSchurStatus_Private(F)); 9717 PetscFunctionReturn(PETSC_SUCCESS); 9718 } 9719 9720 /*@ 9721 MatFactorSolveSchurComplementTranspose - Solve the transpose of the Schur complement system computed during the factorization step 9722 9723 Logically Collective 9724 9725 Input Parameters: 9726 + F - the factored matrix obtained by calling `MatGetFactor()` 9727 . rhs - location where the right hand side of the Schur complement system is stored 9728 - sol - location where the solution of the Schur complement system has to be returned 9729 9730 Level: advanced 9731 9732 Notes: 9733 The sizes of the vectors should match the size of the Schur complement 9734 9735 Must be called after `MatFactorSetSchurIS()` 9736 9737 .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorSetSchurIS()`, `MatFactorSolveSchurComplement()` 9738 @*/ 9739 PetscErrorCode MatFactorSolveSchurComplementTranspose(Mat F, Vec rhs, Vec sol) 9740 { 9741 PetscFunctionBegin; 9742 PetscValidType(F, 1); 9743 PetscValidType(rhs, 2); 9744 PetscValidType(sol, 3); 9745 PetscValidHeaderSpecific(F, MAT_CLASSID, 1); 9746 PetscValidHeaderSpecific(rhs, VEC_CLASSID, 2); 9747 PetscValidHeaderSpecific(sol, VEC_CLASSID, 3); 9748 PetscCheckSameComm(F, 1, rhs, 2); 9749 PetscCheckSameComm(F, 1, sol, 3); 9750 PetscCall(MatFactorFactorizeSchurComplement(F)); 9751 switch (F->schur_status) { 9752 case MAT_FACTOR_SCHUR_FACTORED: 9753 PetscCall(MatSolveTranspose(F->schur, rhs, sol)); 9754 break; 9755 case MAT_FACTOR_SCHUR_INVERTED: 9756 PetscCall(MatMultTranspose(F->schur, rhs, sol)); 9757 break; 9758 default: 9759 SETERRQ(PetscObjectComm((PetscObject)F), PETSC_ERR_SUP, "Unhandled MatFactorSchurStatus %d", F->schur_status); 9760 } 9761 PetscFunctionReturn(PETSC_SUCCESS); 9762 } 9763 9764 /*@ 9765 MatFactorSolveSchurComplement - Solve the Schur complement system computed during the factorization step 9766 9767 Logically Collective 9768 9769 Input Parameters: 9770 + F - the factored matrix obtained by calling `MatGetFactor()` 9771 . rhs - location where the right hand side of the Schur complement system is stored 9772 - sol - location where the solution of the Schur complement system has to be returned 9773 9774 Level: advanced 9775 9776 Notes: 9777 The sizes of the vectors should match the size of the Schur complement 9778 9779 Must be called after `MatFactorSetSchurIS()` 9780 9781 .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorSetSchurIS()`, `MatFactorSolveSchurComplementTranspose()` 9782 @*/ 9783 PetscErrorCode MatFactorSolveSchurComplement(Mat F, Vec rhs, Vec sol) 9784 { 9785 PetscFunctionBegin; 9786 PetscValidType(F, 1); 9787 PetscValidType(rhs, 2); 9788 PetscValidType(sol, 3); 9789 PetscValidHeaderSpecific(F, MAT_CLASSID, 1); 9790 PetscValidHeaderSpecific(rhs, VEC_CLASSID, 2); 9791 PetscValidHeaderSpecific(sol, VEC_CLASSID, 3); 9792 PetscCheckSameComm(F, 1, rhs, 2); 9793 PetscCheckSameComm(F, 1, sol, 3); 9794 PetscCall(MatFactorFactorizeSchurComplement(F)); 9795 switch (F->schur_status) { 9796 case MAT_FACTOR_SCHUR_FACTORED: 9797 PetscCall(MatSolve(F->schur, rhs, sol)); 9798 break; 9799 case MAT_FACTOR_SCHUR_INVERTED: 9800 PetscCall(MatMult(F->schur, rhs, sol)); 9801 break; 9802 default: 9803 SETERRQ(PetscObjectComm((PetscObject)F), PETSC_ERR_SUP, "Unhandled MatFactorSchurStatus %d", F->schur_status); 9804 } 9805 PetscFunctionReturn(PETSC_SUCCESS); 9806 } 9807 9808 PETSC_EXTERN PetscErrorCode MatSeqDenseInvertFactors_Private(Mat); 9809 #if PetscDefined(HAVE_CUDA) 9810 PETSC_SINGLE_LIBRARY_INTERN PetscErrorCode MatSeqDenseCUDAInvertFactors_Internal(Mat); 9811 #endif 9812 9813 /* Schur status updated in the interface */ 9814 static PetscErrorCode MatFactorInvertSchurComplement_Private(Mat F) 9815 { 9816 Mat S = F->schur; 9817 9818 PetscFunctionBegin; 9819 if (S) { 9820 PetscMPIInt size; 9821 PetscBool isdense, isdensecuda; 9822 9823 PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)S), &size)); 9824 PetscCheck(size <= 1, PetscObjectComm((PetscObject)S), PETSC_ERR_SUP, "Not yet implemented"); 9825 PetscCall(PetscObjectTypeCompare((PetscObject)S, MATSEQDENSE, &isdense)); 9826 PetscCall(PetscObjectTypeCompare((PetscObject)S, MATSEQDENSECUDA, &isdensecuda)); 9827 PetscCheck(isdense || isdensecuda, PetscObjectComm((PetscObject)S), PETSC_ERR_SUP, "Not implemented for type %s", ((PetscObject)S)->type_name); 9828 PetscCall(PetscLogEventBegin(MAT_FactorInvS, F, 0, 0, 0)); 9829 if (isdense) { 9830 PetscCall(MatSeqDenseInvertFactors_Private(S)); 9831 } else if (isdensecuda) { 9832 #if defined(PETSC_HAVE_CUDA) 9833 PetscCall(MatSeqDenseCUDAInvertFactors_Internal(S)); 9834 #endif 9835 } 9836 // HIP?????????????? 9837 PetscCall(PetscLogEventEnd(MAT_FactorInvS, F, 0, 0, 0)); 9838 } 9839 PetscFunctionReturn(PETSC_SUCCESS); 9840 } 9841 9842 /*@ 9843 MatFactorInvertSchurComplement - Invert the Schur complement matrix computed during the factorization step 9844 9845 Logically Collective 9846 9847 Input Parameter: 9848 . F - the factored matrix obtained by calling `MatGetFactor()` 9849 9850 Level: advanced 9851 9852 Notes: 9853 Must be called after `MatFactorSetSchurIS()`. 9854 9855 Call `MatFactorGetSchurComplement()` or `MatFactorCreateSchurComplement()` AFTER this call to actually compute the inverse and get access to it. 9856 9857 .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorSetSchurIS()`, `MatFactorGetSchurComplement()`, `MatFactorCreateSchurComplement()` 9858 @*/ 9859 PetscErrorCode MatFactorInvertSchurComplement(Mat F) 9860 { 9861 PetscFunctionBegin; 9862 PetscValidType(F, 1); 9863 PetscValidHeaderSpecific(F, MAT_CLASSID, 1); 9864 if (F->schur_status == MAT_FACTOR_SCHUR_INVERTED) PetscFunctionReturn(PETSC_SUCCESS); 9865 PetscCall(MatFactorFactorizeSchurComplement(F)); 9866 PetscCall(MatFactorInvertSchurComplement_Private(F)); 9867 F->schur_status = MAT_FACTOR_SCHUR_INVERTED; 9868 PetscFunctionReturn(PETSC_SUCCESS); 9869 } 9870 9871 /*@ 9872 MatFactorFactorizeSchurComplement - Factorize the Schur complement matrix computed during the factorization step 9873 9874 Logically Collective 9875 9876 Input Parameter: 9877 . F - the factored matrix obtained by calling `MatGetFactor()` 9878 9879 Level: advanced 9880 9881 Note: 9882 Must be called after `MatFactorSetSchurIS()` 9883 9884 .seealso: [](ch_matrices), `Mat`, `MatGetFactor()`, `MatFactorSetSchurIS()`, `MatFactorInvertSchurComplement()` 9885 @*/ 9886 PetscErrorCode MatFactorFactorizeSchurComplement(Mat F) 9887 { 9888 MatFactorInfo info; 9889 9890 PetscFunctionBegin; 9891 PetscValidType(F, 1); 9892 PetscValidHeaderSpecific(F, MAT_CLASSID, 1); 9893 if (F->schur_status == MAT_FACTOR_SCHUR_INVERTED || F->schur_status == MAT_FACTOR_SCHUR_FACTORED) PetscFunctionReturn(PETSC_SUCCESS); 9894 PetscCall(PetscLogEventBegin(MAT_FactorFactS, F, 0, 0, 0)); 9895 PetscCall(PetscMemzero(&info, sizeof(MatFactorInfo))); 9896 if (F->factortype == MAT_FACTOR_CHOLESKY) { /* LDL^t regarded as Cholesky */ 9897 PetscCall(MatCholeskyFactor(F->schur, NULL, &info)); 9898 } else { 9899 PetscCall(MatLUFactor(F->schur, NULL, NULL, &info)); 9900 } 9901 PetscCall(PetscLogEventEnd(MAT_FactorFactS, F, 0, 0, 0)); 9902 F->schur_status = MAT_FACTOR_SCHUR_FACTORED; 9903 PetscFunctionReturn(PETSC_SUCCESS); 9904 } 9905 9906 /*@ 9907 MatPtAP - Creates the matrix product $C = P^T * A * P$ 9908 9909 Neighbor-wise Collective 9910 9911 Input Parameters: 9912 + A - the matrix 9913 . P - the projection matrix 9914 . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 9915 - fill - expected fill as ratio of nnz(C)/(nnz(A) + nnz(P)), use `PETSC_DEFAULT` if you do not have a good estimate 9916 if the result is a dense matrix this is irrelevant 9917 9918 Output Parameter: 9919 . C - the product matrix 9920 9921 Level: intermediate 9922 9923 Notes: 9924 C will be created and must be destroyed by the user with `MatDestroy()`. 9925 9926 An alternative approach to this function is to use `MatProductCreate()` and set the desired options before the computation is done 9927 9928 Developer Note: 9929 For matrix types without special implementation the function fallbacks to `MatMatMult()` followed by `MatTransposeMatMult()`. 9930 9931 .seealso: [](ch_matrices), `Mat`, `MatProductCreate()`, `MatMatMult()`, `MatRARt()` 9932 @*/ 9933 PetscErrorCode MatPtAP(Mat A, Mat P, MatReuse scall, PetscReal fill, Mat *C) 9934 { 9935 PetscFunctionBegin; 9936 if (scall == MAT_REUSE_MATRIX) MatCheckProduct(*C, 5); 9937 PetscCheck(scall != MAT_INPLACE_MATRIX, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Inplace product not supported"); 9938 9939 if (scall == MAT_INITIAL_MATRIX) { 9940 PetscCall(MatProductCreate(A, P, NULL, C)); 9941 PetscCall(MatProductSetType(*C, MATPRODUCT_PtAP)); 9942 PetscCall(MatProductSetAlgorithm(*C, "default")); 9943 PetscCall(MatProductSetFill(*C, fill)); 9944 9945 (*C)->product->api_user = PETSC_TRUE; 9946 PetscCall(MatProductSetFromOptions(*C)); 9947 PetscCheck((*C)->ops->productsymbolic, PetscObjectComm((PetscObject)(*C)), PETSC_ERR_SUP, "MatProduct %s not supported for A %s and P %s", MatProductTypes[MATPRODUCT_PtAP], ((PetscObject)A)->type_name, ((PetscObject)P)->type_name); 9948 PetscCall(MatProductSymbolic(*C)); 9949 } else { /* scall == MAT_REUSE_MATRIX */ 9950 PetscCall(MatProductReplaceMats(A, P, NULL, *C)); 9951 } 9952 9953 PetscCall(MatProductNumeric(*C)); 9954 (*C)->symmetric = A->symmetric; 9955 (*C)->spd = A->spd; 9956 PetscFunctionReturn(PETSC_SUCCESS); 9957 } 9958 9959 /*@ 9960 MatRARt - Creates the matrix product $C = R * A * R^T$ 9961 9962 Neighbor-wise Collective 9963 9964 Input Parameters: 9965 + A - the matrix 9966 . R - the projection matrix 9967 . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 9968 - fill - expected fill as ratio of nnz(C)/nnz(A), use `PETSC_DEFAULT` if you do not have a good estimate 9969 if the result is a dense matrix this is irrelevant 9970 9971 Output Parameter: 9972 . C - the product matrix 9973 9974 Level: intermediate 9975 9976 Notes: 9977 C will be created and must be destroyed by the user with `MatDestroy()`. 9978 9979 An alternative approach to this function is to use `MatProductCreate()` and set the desired options before the computation is done 9980 9981 This routine is currently only implemented for pairs of `MATAIJ` matrices and classes 9982 which inherit from `MATAIJ`. Due to PETSc sparse matrix block row distribution among processes, 9983 parallel MatRARt is implemented via explicit transpose of R, which could be very expensive. 9984 We recommend using MatPtAP(). 9985 9986 .seealso: [](ch_matrices), `Mat`, `MatProductCreate()`, `MatMatMult()`, `MatPtAP()` 9987 @*/ 9988 PetscErrorCode MatRARt(Mat A, Mat R, MatReuse scall, PetscReal fill, Mat *C) 9989 { 9990 PetscFunctionBegin; 9991 if (scall == MAT_REUSE_MATRIX) MatCheckProduct(*C, 5); 9992 PetscCheck(scall != MAT_INPLACE_MATRIX, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Inplace product not supported"); 9993 9994 if (scall == MAT_INITIAL_MATRIX) { 9995 PetscCall(MatProductCreate(A, R, NULL, C)); 9996 PetscCall(MatProductSetType(*C, MATPRODUCT_RARt)); 9997 PetscCall(MatProductSetAlgorithm(*C, "default")); 9998 PetscCall(MatProductSetFill(*C, fill)); 9999 10000 (*C)->product->api_user = PETSC_TRUE; 10001 PetscCall(MatProductSetFromOptions(*C)); 10002 PetscCheck((*C)->ops->productsymbolic, PetscObjectComm((PetscObject)(*C)), PETSC_ERR_SUP, "MatProduct %s not supported for A %s and R %s", MatProductTypes[MATPRODUCT_RARt], ((PetscObject)A)->type_name, ((PetscObject)R)->type_name); 10003 PetscCall(MatProductSymbolic(*C)); 10004 } else { /* scall == MAT_REUSE_MATRIX */ 10005 PetscCall(MatProductReplaceMats(A, R, NULL, *C)); 10006 } 10007 10008 PetscCall(MatProductNumeric(*C)); 10009 if (A->symmetric == PETSC_BOOL3_TRUE) PetscCall(MatSetOption(*C, MAT_SYMMETRIC, PETSC_TRUE)); 10010 PetscFunctionReturn(PETSC_SUCCESS); 10011 } 10012 10013 static PetscErrorCode MatProduct_Private(Mat A, Mat B, MatReuse scall, PetscReal fill, MatProductType ptype, Mat *C) 10014 { 10015 PetscFunctionBegin; 10016 PetscCheck(scall != MAT_INPLACE_MATRIX, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Inplace product not supported"); 10017 10018 if (scall == MAT_INITIAL_MATRIX) { 10019 PetscCall(PetscInfo(A, "Calling MatProduct API with MAT_INITIAL_MATRIX and product type %s\n", MatProductTypes[ptype])); 10020 PetscCall(MatProductCreate(A, B, NULL, C)); 10021 PetscCall(MatProductSetType(*C, ptype)); 10022 PetscCall(MatProductSetAlgorithm(*C, MATPRODUCTALGORITHMDEFAULT)); 10023 PetscCall(MatProductSetFill(*C, fill)); 10024 10025 (*C)->product->api_user = PETSC_TRUE; 10026 PetscCall(MatProductSetFromOptions(*C)); 10027 PetscCall(MatProductSymbolic(*C)); 10028 } else { /* scall == MAT_REUSE_MATRIX */ 10029 Mat_Product *product = (*C)->product; 10030 PetscBool isdense; 10031 10032 PetscCall(PetscObjectBaseTypeCompareAny((PetscObject)(*C), &isdense, MATSEQDENSE, MATMPIDENSE, "")); 10033 if (isdense && product && product->type != ptype) { 10034 PetscCall(MatProductClear(*C)); 10035 product = NULL; 10036 } 10037 PetscCall(PetscInfo(A, "Calling MatProduct API with MAT_REUSE_MATRIX %s product present and product type %s\n", product ? "with" : "without", MatProductTypes[ptype])); 10038 if (!product) { /* user provide the dense matrix *C without calling MatProductCreate() or reusing it from previous calls */ 10039 PetscCheck(isdense, PetscObjectComm((PetscObject)(*C)), PETSC_ERR_SUP, "Call MatProductCreate() first"); 10040 PetscCall(MatProductCreate_Private(A, B, NULL, *C)); 10041 product = (*C)->product; 10042 product->fill = fill; 10043 product->api_user = PETSC_TRUE; 10044 product->clear = PETSC_TRUE; 10045 10046 PetscCall(MatProductSetType(*C, ptype)); 10047 PetscCall(MatProductSetFromOptions(*C)); 10048 PetscCheck((*C)->ops->productsymbolic, PetscObjectComm((PetscObject)(*C)), PETSC_ERR_SUP, "MatProduct %s not supported for %s and %s", MatProductTypes[ptype], ((PetscObject)A)->type_name, ((PetscObject)B)->type_name); 10049 PetscCall(MatProductSymbolic(*C)); 10050 } else { /* user may change input matrices A or B when REUSE */ 10051 PetscCall(MatProductReplaceMats(A, B, NULL, *C)); 10052 } 10053 } 10054 PetscCall(MatProductNumeric(*C)); 10055 PetscFunctionReturn(PETSC_SUCCESS); 10056 } 10057 10058 /*@ 10059 MatMatMult - Performs matrix-matrix multiplication C=A*B. 10060 10061 Neighbor-wise Collective 10062 10063 Input Parameters: 10064 + A - the left matrix 10065 . B - the right matrix 10066 . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 10067 - fill - expected fill as ratio of nnz(C)/(nnz(A) + nnz(B)), use `PETSC_DEFAULT` if you do not have a good estimate 10068 if the result is a dense matrix this is irrelevant 10069 10070 Output Parameter: 10071 . C - the product matrix 10072 10073 Notes: 10074 Unless scall is `MAT_REUSE_MATRIX` C will be created. 10075 10076 `MAT_REUSE_MATRIX` can only be used if the matrices A and B have the same nonzero pattern as in the previous call and C was obtained from a previous 10077 call to this function with `MAT_INITIAL_MATRIX`. 10078 10079 To determine the correct fill value, run with -info and search for the string "Fill ratio" to see the value actually needed. 10080 10081 In the special case where matrix B (and hence C) are dense you can create the correctly sized matrix C yourself and then call this routine with `MAT_REUSE_MATRIX`, 10082 rather than first having `MatMatMult()` create it for you. You can NEVER do this if the matrix C is sparse. 10083 10084 Example of Usage: 10085 .vb 10086 MatProductCreate(A,B,NULL,&C); 10087 MatProductSetType(C,MATPRODUCT_AB); 10088 MatProductSymbolic(C); 10089 MatProductNumeric(C); // compute C=A * B 10090 MatProductReplaceMats(A1,B1,NULL,C); // compute C=A1 * B1 10091 MatProductNumeric(C); 10092 MatProductReplaceMats(A2,NULL,NULL,C); // compute C=A2 * B1 10093 MatProductNumeric(C); 10094 .ve 10095 10096 Level: intermediate 10097 10098 .seealso: [](ch_matrices), `Mat`, `MatProductType`, `MATPRODUCT_AB`, `MatTransposeMatMult()`, `MatMatTransposeMult()`, `MatPtAP()`, `MatProductCreate()`, `MatProductSymbolic()`, `MatProductReplaceMats()`, `MatProductNumeric()` 10099 @*/ 10100 PetscErrorCode MatMatMult(Mat A, Mat B, MatReuse scall, PetscReal fill, Mat *C) 10101 { 10102 PetscFunctionBegin; 10103 PetscCall(MatProduct_Private(A, B, scall, fill, MATPRODUCT_AB, C)); 10104 PetscFunctionReturn(PETSC_SUCCESS); 10105 } 10106 10107 /*@ 10108 MatMatTransposeMult - Performs matrix-matrix multiplication $C = A*B^T$. 10109 10110 Neighbor-wise Collective 10111 10112 Input Parameters: 10113 + A - the left matrix 10114 . B - the right matrix 10115 . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 10116 - fill - expected fill as ratio of nnz(C)/(nnz(A) + nnz(B)), use `PETSC_DEFAULT` if not known 10117 10118 Output Parameter: 10119 . C - the product matrix 10120 10121 Options Database Key: 10122 . -matmattransmult_mpidense_mpidense_via {allgatherv,cyclic} - Choose between algorithms for `MATMPIDENSE` matrices: the 10123 first redundantly copies the transposed `B` matrix on each process and requires O(log P) communication complexity; 10124 the second never stores more than one portion of the `B` matrix at a time but requires O(P) communication complexity. 10125 10126 Level: intermediate 10127 10128 Notes: 10129 C will be created if `MAT_INITIAL_MATRIX` and must be destroyed by the user with `MatDestroy()`. 10130 10131 `MAT_REUSE_MATRIX` can only be used if the matrices A and B have the same nonzero pattern as in the previous call 10132 10133 To determine the correct fill value, run with -info and search for the string "Fill ratio" to see the value 10134 actually needed. 10135 10136 This routine is currently only implemented for pairs of `MATSEQAIJ` matrices, for the `MATSEQDENSE` class, 10137 and for pairs of `MATMPIDENSE` matrices. 10138 10139 This routine is shorthand for using `MatProductCreate()` with the `MatProductType` of `MATPRODUCT_ABt` 10140 10141 .seealso: [](ch_matrices), `Mat`, `MatProductCreate()`, `MATPRODUCT_ABt`, `MatMatMult()`, `MatTransposeMatMult()` `MatPtAP()`, `MatProductAlgorithm`, `MatProductType` 10142 @*/ 10143 PetscErrorCode MatMatTransposeMult(Mat A, Mat B, MatReuse scall, PetscReal fill, Mat *C) 10144 { 10145 PetscFunctionBegin; 10146 PetscCall(MatProduct_Private(A, B, scall, fill, MATPRODUCT_ABt, C)); 10147 if (A == B) PetscCall(MatSetOption(*C, MAT_SYMMETRIC, PETSC_TRUE)); 10148 PetscFunctionReturn(PETSC_SUCCESS); 10149 } 10150 10151 /*@ 10152 MatTransposeMatMult - Performs matrix-matrix multiplication $C = A^T*B$. 10153 10154 Neighbor-wise Collective 10155 10156 Input Parameters: 10157 + A - the left matrix 10158 . B - the right matrix 10159 . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 10160 - fill - expected fill as ratio of nnz(C)/(nnz(A) + nnz(B)), use `PETSC_DEFAULT` if not known 10161 10162 Output Parameter: 10163 . C - the product matrix 10164 10165 Level: intermediate 10166 10167 Notes: 10168 `C` will be created if `MAT_INITIAL_MATRIX` and must be destroyed by the user with `MatDestroy()`. 10169 10170 `MAT_REUSE_MATRIX` can only be used if the matrices A and B have the same nonzero pattern as in the previous call. 10171 10172 This routine is shorthand for using `MatProductCreate()` with the `MatProductType` of `MATPRODUCT_AtB` 10173 10174 To determine the correct fill value, run with -info and search for the string "Fill ratio" to see the value 10175 actually needed. 10176 10177 This routine is currently implemented for pairs of `MATAIJ` matrices and pairs of `MATSEQDENSE` matrices and classes 10178 which inherit from `MATSEQAIJ`. `C` will be of the same type as the input matrices. 10179 10180 .seealso: [](ch_matrices), `Mat`, `MatProductCreate()`, `MATPRODUCT_AtB`, `MatMatMult()`, `MatMatTransposeMult()`, `MatPtAP()` 10181 @*/ 10182 PetscErrorCode MatTransposeMatMult(Mat A, Mat B, MatReuse scall, PetscReal fill, Mat *C) 10183 { 10184 PetscFunctionBegin; 10185 PetscCall(MatProduct_Private(A, B, scall, fill, MATPRODUCT_AtB, C)); 10186 PetscFunctionReturn(PETSC_SUCCESS); 10187 } 10188 10189 /*@ 10190 MatMatMatMult - Performs matrix-matrix-matrix multiplication D=A*B*C. 10191 10192 Neighbor-wise Collective 10193 10194 Input Parameters: 10195 + A - the left matrix 10196 . B - the middle matrix 10197 . C - the right matrix 10198 . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 10199 - fill - expected fill as ratio of nnz(D)/(nnz(A) + nnz(B)+nnz(C)), use `PETSC_DEFAULT` if you do not have a good estimate 10200 if the result is a dense matrix this is irrelevant 10201 10202 Output Parameter: 10203 . D - the product matrix 10204 10205 Level: intermediate 10206 10207 Notes: 10208 Unless `scall` is `MAT_REUSE_MATRIX` D will be created. 10209 10210 `MAT_REUSE_MATRIX` can only be used if the matrices `A`, `B`, and `C` have the same nonzero pattern as in the previous call 10211 10212 This routine is shorthand for using `MatProductCreate()` with the `MatProductType` of `MATPRODUCT_ABC` 10213 10214 To determine the correct fill value, run with -info and search for the string "Fill ratio" to see the value 10215 actually needed. 10216 10217 If you have many matrices with the same non-zero structure to multiply, you 10218 should use `MAT_REUSE_MATRIX` in all calls but the first 10219 10220 .seealso: [](ch_matrices), `Mat`, `MatProductCreate()`, `MATPRODUCT_ABC`, `MatMatMult`, `MatPtAP()`, `MatMatTransposeMult()`, `MatTransposeMatMult()` 10221 @*/ 10222 PetscErrorCode MatMatMatMult(Mat A, Mat B, Mat C, MatReuse scall, PetscReal fill, Mat *D) 10223 { 10224 PetscFunctionBegin; 10225 if (scall == MAT_REUSE_MATRIX) MatCheckProduct(*D, 6); 10226 PetscCheck(scall != MAT_INPLACE_MATRIX, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Inplace product not supported"); 10227 10228 if (scall == MAT_INITIAL_MATRIX) { 10229 PetscCall(MatProductCreate(A, B, C, D)); 10230 PetscCall(MatProductSetType(*D, MATPRODUCT_ABC)); 10231 PetscCall(MatProductSetAlgorithm(*D, "default")); 10232 PetscCall(MatProductSetFill(*D, fill)); 10233 10234 (*D)->product->api_user = PETSC_TRUE; 10235 PetscCall(MatProductSetFromOptions(*D)); 10236 PetscCheck((*D)->ops->productsymbolic, PetscObjectComm((PetscObject)(*D)), PETSC_ERR_SUP, "MatProduct %s not supported for A %s, B %s and C %s", MatProductTypes[MATPRODUCT_ABC], ((PetscObject)A)->type_name, ((PetscObject)B)->type_name, 10237 ((PetscObject)C)->type_name); 10238 PetscCall(MatProductSymbolic(*D)); 10239 } else { /* user may change input matrices when REUSE */ 10240 PetscCall(MatProductReplaceMats(A, B, C, *D)); 10241 } 10242 PetscCall(MatProductNumeric(*D)); 10243 PetscFunctionReturn(PETSC_SUCCESS); 10244 } 10245 10246 /*@ 10247 MatCreateRedundantMatrix - Create redundant matrices and put them into processors of subcommunicators. 10248 10249 Collective 10250 10251 Input Parameters: 10252 + mat - the matrix 10253 . nsubcomm - the number of subcommunicators (= number of redundant parallel or sequential matrices) 10254 . subcomm - MPI communicator split from the communicator where mat resides in (or `MPI_COMM_NULL` if nsubcomm is used) 10255 - reuse - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 10256 10257 Output Parameter: 10258 . matredundant - redundant matrix 10259 10260 Level: advanced 10261 10262 Notes: 10263 `MAT_REUSE_MATRIX` can only be used when the nonzero structure of the 10264 original matrix has not changed from that last call to `MatCreateRedundantMatrix()`. 10265 10266 This routine creates the duplicated matrices in the subcommunicators; you should NOT create them before 10267 calling it. 10268 10269 `PetscSubcommCreate()` can be used to manage the creation of the subcomm but need not be. 10270 10271 .seealso: [](ch_matrices), `Mat`, `MatDestroy()`, `PetscSubcommCreate()`, `PetscSubcomm` 10272 @*/ 10273 PetscErrorCode MatCreateRedundantMatrix(Mat mat, PetscInt nsubcomm, MPI_Comm subcomm, MatReuse reuse, Mat *matredundant) 10274 { 10275 MPI_Comm comm; 10276 PetscMPIInt size; 10277 PetscInt mloc_sub, nloc_sub, rstart, rend, M = mat->rmap->N, N = mat->cmap->N, bs = mat->rmap->bs; 10278 Mat_Redundant *redund = NULL; 10279 PetscSubcomm psubcomm = NULL; 10280 MPI_Comm subcomm_in = subcomm; 10281 Mat *matseq; 10282 IS isrow, iscol; 10283 PetscBool newsubcomm = PETSC_FALSE; 10284 10285 PetscFunctionBegin; 10286 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 10287 if (nsubcomm && reuse == MAT_REUSE_MATRIX) { 10288 PetscAssertPointer(*matredundant, 5); 10289 PetscValidHeaderSpecific(*matredundant, MAT_CLASSID, 5); 10290 } 10291 10292 PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)mat), &size)); 10293 if (size == 1 || nsubcomm == 1) { 10294 if (reuse == MAT_INITIAL_MATRIX) { 10295 PetscCall(MatDuplicate(mat, MAT_COPY_VALUES, matredundant)); 10296 } else { 10297 PetscCheck(*matredundant != mat, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "MAT_REUSE_MATRIX means reuse the matrix passed in as the final argument, not the original matrix"); 10298 PetscCall(MatCopy(mat, *matredundant, SAME_NONZERO_PATTERN)); 10299 } 10300 PetscFunctionReturn(PETSC_SUCCESS); 10301 } 10302 10303 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 10304 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 10305 MatCheckPreallocated(mat, 1); 10306 10307 PetscCall(PetscLogEventBegin(MAT_RedundantMat, mat, 0, 0, 0)); 10308 if (subcomm_in == MPI_COMM_NULL && reuse == MAT_INITIAL_MATRIX) { /* get subcomm if user does not provide subcomm */ 10309 /* create psubcomm, then get subcomm */ 10310 PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 10311 PetscCallMPI(MPI_Comm_size(comm, &size)); 10312 PetscCheck(nsubcomm >= 1 && nsubcomm <= size, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "nsubcomm must between 1 and %d", size); 10313 10314 PetscCall(PetscSubcommCreate(comm, &psubcomm)); 10315 PetscCall(PetscSubcommSetNumber(psubcomm, nsubcomm)); 10316 PetscCall(PetscSubcommSetType(psubcomm, PETSC_SUBCOMM_CONTIGUOUS)); 10317 PetscCall(PetscSubcommSetFromOptions(psubcomm)); 10318 PetscCall(PetscCommDuplicate(PetscSubcommChild(psubcomm), &subcomm, NULL)); 10319 newsubcomm = PETSC_TRUE; 10320 PetscCall(PetscSubcommDestroy(&psubcomm)); 10321 } 10322 10323 /* get isrow, iscol and a local sequential matrix matseq[0] */ 10324 if (reuse == MAT_INITIAL_MATRIX) { 10325 mloc_sub = PETSC_DECIDE; 10326 nloc_sub = PETSC_DECIDE; 10327 if (bs < 1) { 10328 PetscCall(PetscSplitOwnership(subcomm, &mloc_sub, &M)); 10329 PetscCall(PetscSplitOwnership(subcomm, &nloc_sub, &N)); 10330 } else { 10331 PetscCall(PetscSplitOwnershipBlock(subcomm, bs, &mloc_sub, &M)); 10332 PetscCall(PetscSplitOwnershipBlock(subcomm, bs, &nloc_sub, &N)); 10333 } 10334 PetscCallMPI(MPI_Scan(&mloc_sub, &rend, 1, MPIU_INT, MPI_SUM, subcomm)); 10335 rstart = rend - mloc_sub; 10336 PetscCall(ISCreateStride(PETSC_COMM_SELF, mloc_sub, rstart, 1, &isrow)); 10337 PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol)); 10338 PetscCall(ISSetIdentity(iscol)); 10339 } else { /* reuse == MAT_REUSE_MATRIX */ 10340 PetscCheck(*matredundant != mat, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "MAT_REUSE_MATRIX means reuse the matrix passed in as the final argument, not the original matrix"); 10341 /* retrieve subcomm */ 10342 PetscCall(PetscObjectGetComm((PetscObject)(*matredundant), &subcomm)); 10343 redund = (*matredundant)->redundant; 10344 isrow = redund->isrow; 10345 iscol = redund->iscol; 10346 matseq = redund->matseq; 10347 } 10348 PetscCall(MatCreateSubMatrices(mat, 1, &isrow, &iscol, reuse, &matseq)); 10349 10350 /* get matredundant over subcomm */ 10351 if (reuse == MAT_INITIAL_MATRIX) { 10352 PetscCall(MatCreateMPIMatConcatenateSeqMat(subcomm, matseq[0], nloc_sub, reuse, matredundant)); 10353 10354 /* create a supporting struct and attach it to C for reuse */ 10355 PetscCall(PetscNew(&redund)); 10356 (*matredundant)->redundant = redund; 10357 redund->isrow = isrow; 10358 redund->iscol = iscol; 10359 redund->matseq = matseq; 10360 if (newsubcomm) { 10361 redund->subcomm = subcomm; 10362 } else { 10363 redund->subcomm = MPI_COMM_NULL; 10364 } 10365 } else { 10366 PetscCall(MatCreateMPIMatConcatenateSeqMat(subcomm, matseq[0], PETSC_DECIDE, reuse, matredundant)); 10367 } 10368 #if defined(PETSC_HAVE_VIENNACL) || defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 10369 if (matseq[0]->boundtocpu && matseq[0]->bindingpropagates) { 10370 PetscCall(MatBindToCPU(*matredundant, PETSC_TRUE)); 10371 PetscCall(MatSetBindingPropagates(*matredundant, PETSC_TRUE)); 10372 } 10373 #endif 10374 PetscCall(PetscLogEventEnd(MAT_RedundantMat, mat, 0, 0, 0)); 10375 PetscFunctionReturn(PETSC_SUCCESS); 10376 } 10377 10378 /*@C 10379 MatGetMultiProcBlock - Create multiple 'parallel submatrices' from 10380 a given `Mat`. Each submatrix can span multiple procs. 10381 10382 Collective 10383 10384 Input Parameters: 10385 + mat - the matrix 10386 . subComm - the sub communicator obtained as if by `MPI_Comm_split(PetscObjectComm((PetscObject)mat))` 10387 - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 10388 10389 Output Parameter: 10390 . subMat - parallel sub-matrices each spanning a given `subcomm` 10391 10392 Level: advanced 10393 10394 Notes: 10395 The submatrix partition across processors is dictated by `subComm` a 10396 communicator obtained by `MPI_comm_split()` or via `PetscSubcommCreate()`. The `subComm` 10397 is not restricted to be grouped with consecutive original MPI processes. 10398 10399 Due the `MPI_Comm_split()` usage, the parallel layout of the submatrices 10400 map directly to the layout of the original matrix [wrt the local 10401 row,col partitioning]. So the original 'DiagonalMat' naturally maps 10402 into the 'DiagonalMat' of the `subMat`, hence it is used directly from 10403 the `subMat`. However the offDiagMat looses some columns - and this is 10404 reconstructed with `MatSetValues()` 10405 10406 This is used by `PCBJACOBI` when a single block spans multiple MPI processes. 10407 10408 .seealso: [](ch_matrices), `Mat`, `MatCreateRedundantMatrix()`, `MatCreateSubMatrices()`, `PCBJACOBI` 10409 @*/ 10410 PetscErrorCode MatGetMultiProcBlock(Mat mat, MPI_Comm subComm, MatReuse scall, Mat *subMat) 10411 { 10412 PetscMPIInt commsize, subCommSize; 10413 10414 PetscFunctionBegin; 10415 PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)mat), &commsize)); 10416 PetscCallMPI(MPI_Comm_size(subComm, &subCommSize)); 10417 PetscCheck(subCommSize <= commsize, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_OUTOFRANGE, "CommSize %d < SubCommZize %d", commsize, subCommSize); 10418 10419 PetscCheck(scall != MAT_REUSE_MATRIX || *subMat != mat, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "MAT_REUSE_MATRIX means reuse the matrix passed in as the final argument, not the original matrix"); 10420 PetscCall(PetscLogEventBegin(MAT_GetMultiProcBlock, mat, 0, 0, 0)); 10421 PetscUseTypeMethod(mat, getmultiprocblock, subComm, scall, subMat); 10422 PetscCall(PetscLogEventEnd(MAT_GetMultiProcBlock, mat, 0, 0, 0)); 10423 PetscFunctionReturn(PETSC_SUCCESS); 10424 } 10425 10426 /*@ 10427 MatGetLocalSubMatrix - Gets a reference to a submatrix specified in local numbering 10428 10429 Not Collective 10430 10431 Input Parameters: 10432 + mat - matrix to extract local submatrix from 10433 . isrow - local row indices for submatrix 10434 - iscol - local column indices for submatrix 10435 10436 Output Parameter: 10437 . submat - the submatrix 10438 10439 Level: intermediate 10440 10441 Notes: 10442 `submat` should be disposed of with `MatRestoreLocalSubMatrix()`. 10443 10444 Depending on the format of `mat`, the returned `submat` may not implement `MatMult()`. Its communicator may be 10445 the same as `mat`, it may be `PETSC_COMM_SELF`, or some other sub-communictor of `mat`'s. 10446 10447 `submat` always implements `MatSetValuesLocal()`. If `isrow` and `iscol` have the same block size, then 10448 `MatSetValuesBlockedLocal()` will also be implemented. 10449 10450 `mat` must have had a `ISLocalToGlobalMapping` provided to it with `MatSetLocalToGlobalMapping()`. 10451 Matrices obtained with `DMCreateMatrix()` generally already have the local to global mapping provided. 10452 10453 .seealso: [](ch_matrices), `Mat`, `MatRestoreLocalSubMatrix()`, `MatCreateLocalRef()`, `MatSetLocalToGlobalMapping()` 10454 @*/ 10455 PetscErrorCode MatGetLocalSubMatrix(Mat mat, IS isrow, IS iscol, Mat *submat) 10456 { 10457 PetscFunctionBegin; 10458 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 10459 PetscValidHeaderSpecific(isrow, IS_CLASSID, 2); 10460 PetscValidHeaderSpecific(iscol, IS_CLASSID, 3); 10461 PetscCheckSameComm(isrow, 2, iscol, 3); 10462 PetscAssertPointer(submat, 4); 10463 PetscCheck(mat->rmap->mapping, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Matrix must have local to global mapping provided before this call"); 10464 10465 if (mat->ops->getlocalsubmatrix) { 10466 PetscUseTypeMethod(mat, getlocalsubmatrix, isrow, iscol, submat); 10467 } else { 10468 PetscCall(MatCreateLocalRef(mat, isrow, iscol, submat)); 10469 } 10470 PetscFunctionReturn(PETSC_SUCCESS); 10471 } 10472 10473 /*@ 10474 MatRestoreLocalSubMatrix - Restores a reference to a submatrix specified in local numbering obtained with `MatGetLocalSubMatrix()` 10475 10476 Not Collective 10477 10478 Input Parameters: 10479 + mat - matrix to extract local submatrix from 10480 . isrow - local row indices for submatrix 10481 . iscol - local column indices for submatrix 10482 - submat - the submatrix 10483 10484 Level: intermediate 10485 10486 .seealso: [](ch_matrices), `Mat`, `MatGetLocalSubMatrix()` 10487 @*/ 10488 PetscErrorCode MatRestoreLocalSubMatrix(Mat mat, IS isrow, IS iscol, Mat *submat) 10489 { 10490 PetscFunctionBegin; 10491 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 10492 PetscValidHeaderSpecific(isrow, IS_CLASSID, 2); 10493 PetscValidHeaderSpecific(iscol, IS_CLASSID, 3); 10494 PetscCheckSameComm(isrow, 2, iscol, 3); 10495 PetscAssertPointer(submat, 4); 10496 if (*submat) PetscValidHeaderSpecific(*submat, MAT_CLASSID, 4); 10497 10498 if (mat->ops->restorelocalsubmatrix) { 10499 PetscUseTypeMethod(mat, restorelocalsubmatrix, isrow, iscol, submat); 10500 } else { 10501 PetscCall(MatDestroy(submat)); 10502 } 10503 *submat = NULL; 10504 PetscFunctionReturn(PETSC_SUCCESS); 10505 } 10506 10507 /*@ 10508 MatFindZeroDiagonals - Finds all the rows of a matrix that have zero or no diagonal entry in the matrix 10509 10510 Collective 10511 10512 Input Parameter: 10513 . mat - the matrix 10514 10515 Output Parameter: 10516 . is - if any rows have zero diagonals this contains the list of them 10517 10518 Level: developer 10519 10520 .seealso: [](ch_matrices), `Mat`, `MatMultTranspose()`, `MatMultAdd()`, `MatMultTransposeAdd()` 10521 @*/ 10522 PetscErrorCode MatFindZeroDiagonals(Mat mat, IS *is) 10523 { 10524 PetscFunctionBegin; 10525 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 10526 PetscValidType(mat, 1); 10527 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 10528 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 10529 10530 if (!mat->ops->findzerodiagonals) { 10531 Vec diag; 10532 const PetscScalar *a; 10533 PetscInt *rows; 10534 PetscInt rStart, rEnd, r, nrow = 0; 10535 10536 PetscCall(MatCreateVecs(mat, &diag, NULL)); 10537 PetscCall(MatGetDiagonal(mat, diag)); 10538 PetscCall(MatGetOwnershipRange(mat, &rStart, &rEnd)); 10539 PetscCall(VecGetArrayRead(diag, &a)); 10540 for (r = 0; r < rEnd - rStart; ++r) 10541 if (a[r] == 0.0) ++nrow; 10542 PetscCall(PetscMalloc1(nrow, &rows)); 10543 nrow = 0; 10544 for (r = 0; r < rEnd - rStart; ++r) 10545 if (a[r] == 0.0) rows[nrow++] = r + rStart; 10546 PetscCall(VecRestoreArrayRead(diag, &a)); 10547 PetscCall(VecDestroy(&diag)); 10548 PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)mat), nrow, rows, PETSC_OWN_POINTER, is)); 10549 } else { 10550 PetscUseTypeMethod(mat, findzerodiagonals, is); 10551 } 10552 PetscFunctionReturn(PETSC_SUCCESS); 10553 } 10554 10555 /*@ 10556 MatFindOffBlockDiagonalEntries - Finds all the rows of a matrix that have entries outside of the main diagonal block (defined by the matrix block size) 10557 10558 Collective 10559 10560 Input Parameter: 10561 . mat - the matrix 10562 10563 Output Parameter: 10564 . is - contains the list of rows with off block diagonal entries 10565 10566 Level: developer 10567 10568 .seealso: [](ch_matrices), `Mat`, `MatMultTranspose()`, `MatMultAdd()`, `MatMultTransposeAdd()` 10569 @*/ 10570 PetscErrorCode MatFindOffBlockDiagonalEntries(Mat mat, IS *is) 10571 { 10572 PetscFunctionBegin; 10573 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 10574 PetscValidType(mat, 1); 10575 PetscCheck(mat->assembled, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 10576 PetscCheck(!mat->factortype, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 10577 10578 PetscUseTypeMethod(mat, findoffblockdiagonalentries, is); 10579 PetscFunctionReturn(PETSC_SUCCESS); 10580 } 10581 10582 /*@C 10583 MatInvertBlockDiagonal - Inverts the block diagonal entries. 10584 10585 Collective; No Fortran Support 10586 10587 Input Parameter: 10588 . mat - the matrix 10589 10590 Output Parameter: 10591 . values - the block inverses in column major order (FORTRAN-like) 10592 10593 Level: advanced 10594 10595 Notes: 10596 The size of the blocks is determined by the block size of the matrix. 10597 10598 The blocks never overlap between two MPI processes, use `MatInvertVariableBlockEnvelope()` for that case 10599 10600 The blocks all have the same size, use `MatInvertVariableBlockDiagonal()` for variable block size 10601 10602 .seealso: [](ch_matrices), `Mat`, `MatInvertVariableBlockEnvelope()`, `MatInvertBlockDiagonalMat()` 10603 @*/ 10604 PetscErrorCode MatInvertBlockDiagonal(Mat mat, const PetscScalar **values) 10605 { 10606 PetscFunctionBegin; 10607 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 10608 PetscCheck(mat->assembled, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 10609 PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 10610 PetscUseTypeMethod(mat, invertblockdiagonal, values); 10611 PetscFunctionReturn(PETSC_SUCCESS); 10612 } 10613 10614 /*@C 10615 MatInvertVariableBlockDiagonal - Inverts the point block diagonal entries. 10616 10617 Collective; No Fortran Support 10618 10619 Input Parameters: 10620 + mat - the matrix 10621 . nblocks - the number of blocks on the process, set with `MatSetVariableBlockSizes()` 10622 - bsizes - the size of each block on the process, set with `MatSetVariableBlockSizes()` 10623 10624 Output Parameter: 10625 . values - the block inverses in column major order (FORTRAN-like) 10626 10627 Level: advanced 10628 10629 Notes: 10630 Use `MatInvertBlockDiagonal()` if all blocks have the same size 10631 10632 The blocks never overlap between two MPI processes, use `MatInvertVariableBlockEnvelope()` for that case 10633 10634 .seealso: [](ch_matrices), `Mat`, `MatInvertBlockDiagonal()`, `MatSetVariableBlockSizes()`, `MatInvertVariableBlockEnvelope()` 10635 @*/ 10636 PetscErrorCode MatInvertVariableBlockDiagonal(Mat mat, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *values) 10637 { 10638 PetscFunctionBegin; 10639 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 10640 PetscCheck(mat->assembled, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for unassembled matrix"); 10641 PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 10642 PetscUseTypeMethod(mat, invertvariableblockdiagonal, nblocks, bsizes, values); 10643 PetscFunctionReturn(PETSC_SUCCESS); 10644 } 10645 10646 /*@ 10647 MatInvertBlockDiagonalMat - set the values of matrix C to be the inverted block diagonal of matrix A 10648 10649 Collective 10650 10651 Input Parameters: 10652 + A - the matrix 10653 - C - matrix with inverted block diagonal of `A`. This matrix should be created and may have its type set. 10654 10655 Level: advanced 10656 10657 Note: 10658 The blocksize of the matrix is used to determine the blocks on the diagonal of `C` 10659 10660 .seealso: [](ch_matrices), `Mat`, `MatInvertBlockDiagonal()` 10661 @*/ 10662 PetscErrorCode MatInvertBlockDiagonalMat(Mat A, Mat C) 10663 { 10664 const PetscScalar *vals; 10665 PetscInt *dnnz; 10666 PetscInt m, rstart, rend, bs, i, j; 10667 10668 PetscFunctionBegin; 10669 PetscCall(MatInvertBlockDiagonal(A, &vals)); 10670 PetscCall(MatGetBlockSize(A, &bs)); 10671 PetscCall(MatGetLocalSize(A, &m, NULL)); 10672 PetscCall(MatSetLayouts(C, A->rmap, A->cmap)); 10673 PetscCall(PetscMalloc1(m / bs, &dnnz)); 10674 for (j = 0; j < m / bs; j++) dnnz[j] = 1; 10675 PetscCall(MatXAIJSetPreallocation(C, bs, dnnz, NULL, NULL, NULL)); 10676 PetscCall(PetscFree(dnnz)); 10677 PetscCall(MatGetOwnershipRange(C, &rstart, &rend)); 10678 PetscCall(MatSetOption(C, MAT_ROW_ORIENTED, PETSC_FALSE)); 10679 for (i = rstart / bs; i < rend / bs; i++) PetscCall(MatSetValuesBlocked(C, 1, &i, 1, &i, &vals[(i - rstart / bs) * bs * bs], INSERT_VALUES)); 10680 PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 10681 PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 10682 PetscCall(MatSetOption(C, MAT_ROW_ORIENTED, PETSC_TRUE)); 10683 PetscFunctionReturn(PETSC_SUCCESS); 10684 } 10685 10686 /*@C 10687 MatTransposeColoringDestroy - Destroys a coloring context for matrix product $C = A*B^T$ that was created 10688 via `MatTransposeColoringCreate()`. 10689 10690 Collective 10691 10692 Input Parameter: 10693 . c - coloring context 10694 10695 Level: intermediate 10696 10697 .seealso: [](ch_matrices), `Mat`, `MatTransposeColoringCreate()` 10698 @*/ 10699 PetscErrorCode MatTransposeColoringDestroy(MatTransposeColoring *c) 10700 { 10701 MatTransposeColoring matcolor = *c; 10702 10703 PetscFunctionBegin; 10704 if (!matcolor) PetscFunctionReturn(PETSC_SUCCESS); 10705 if (--((PetscObject)matcolor)->refct > 0) { 10706 matcolor = NULL; 10707 PetscFunctionReturn(PETSC_SUCCESS); 10708 } 10709 10710 PetscCall(PetscFree3(matcolor->ncolumns, matcolor->nrows, matcolor->colorforrow)); 10711 PetscCall(PetscFree(matcolor->rows)); 10712 PetscCall(PetscFree(matcolor->den2sp)); 10713 PetscCall(PetscFree(matcolor->colorforcol)); 10714 PetscCall(PetscFree(matcolor->columns)); 10715 if (matcolor->brows > 0) PetscCall(PetscFree(matcolor->lstart)); 10716 PetscCall(PetscHeaderDestroy(c)); 10717 PetscFunctionReturn(PETSC_SUCCESS); 10718 } 10719 10720 /*@C 10721 MatTransColoringApplySpToDen - Given a symbolic matrix product $C = A*B^T$ for which 10722 a `MatTransposeColoring` context has been created, computes a dense $B^T$ by applying 10723 `MatTransposeColoring` to sparse `B`. 10724 10725 Collective 10726 10727 Input Parameters: 10728 + coloring - coloring context created with `MatTransposeColoringCreate()` 10729 - B - sparse matrix 10730 10731 Output Parameter: 10732 . Btdense - dense matrix $B^T$ 10733 10734 Level: developer 10735 10736 Note: 10737 These are used internally for some implementations of `MatRARt()` 10738 10739 .seealso: [](ch_matrices), `Mat`, `MatTransposeColoringCreate()`, `MatTransposeColoringDestroy()`, `MatTransColoringApplyDenToSp()` 10740 @*/ 10741 PetscErrorCode MatTransColoringApplySpToDen(MatTransposeColoring coloring, Mat B, Mat Btdense) 10742 { 10743 PetscFunctionBegin; 10744 PetscValidHeaderSpecific(coloring, MAT_TRANSPOSECOLORING_CLASSID, 1); 10745 PetscValidHeaderSpecific(B, MAT_CLASSID, 2); 10746 PetscValidHeaderSpecific(Btdense, MAT_CLASSID, 3); 10747 10748 PetscCall((*B->ops->transcoloringapplysptoden)(coloring, B, Btdense)); 10749 PetscFunctionReturn(PETSC_SUCCESS); 10750 } 10751 10752 /*@C 10753 MatTransColoringApplyDenToSp - Given a symbolic matrix product $C_{sp} = A*B^T$ for which 10754 a `MatTransposeColoring` context has been created and a dense matrix $C_{den} = A*B^T_{dense}$ 10755 in which `B^T_{dens}` is obtained from `MatTransColoringApplySpToDen()`, recover sparse matrix 10756 $C_{sp}$ from $C_{den}$. 10757 10758 Collective 10759 10760 Input Parameters: 10761 + matcoloring - coloring context created with `MatTransposeColoringCreate()` 10762 - Cden - matrix product of a sparse matrix and a dense matrix Btdense 10763 10764 Output Parameter: 10765 . Csp - sparse matrix 10766 10767 Level: developer 10768 10769 Note: 10770 These are used internally for some implementations of `MatRARt()` 10771 10772 .seealso: [](ch_matrices), `Mat`, `MatTransposeColoringCreate()`, `MatTransposeColoringDestroy()`, `MatTransColoringApplySpToDen()` 10773 @*/ 10774 PetscErrorCode MatTransColoringApplyDenToSp(MatTransposeColoring matcoloring, Mat Cden, Mat Csp) 10775 { 10776 PetscFunctionBegin; 10777 PetscValidHeaderSpecific(matcoloring, MAT_TRANSPOSECOLORING_CLASSID, 1); 10778 PetscValidHeaderSpecific(Cden, MAT_CLASSID, 2); 10779 PetscValidHeaderSpecific(Csp, MAT_CLASSID, 3); 10780 10781 PetscCall((*Csp->ops->transcoloringapplydentosp)(matcoloring, Cden, Csp)); 10782 PetscCall(MatAssemblyBegin(Csp, MAT_FINAL_ASSEMBLY)); 10783 PetscCall(MatAssemblyEnd(Csp, MAT_FINAL_ASSEMBLY)); 10784 PetscFunctionReturn(PETSC_SUCCESS); 10785 } 10786 10787 /*@C 10788 MatTransposeColoringCreate - Creates a matrix coloring context for the matrix product $C = A*B^T$. 10789 10790 Collective 10791 10792 Input Parameters: 10793 + mat - the matrix product C 10794 - iscoloring - the coloring of the matrix; usually obtained with `MatColoringCreate()` or `DMCreateColoring()` 10795 10796 Output Parameter: 10797 . color - the new coloring context 10798 10799 Level: intermediate 10800 10801 .seealso: [](ch_matrices), `Mat`, `MatTransposeColoringDestroy()`, `MatTransColoringApplySpToDen()`, 10802 `MatTransColoringApplyDenToSp()` 10803 @*/ 10804 PetscErrorCode MatTransposeColoringCreate(Mat mat, ISColoring iscoloring, MatTransposeColoring *color) 10805 { 10806 MatTransposeColoring c; 10807 MPI_Comm comm; 10808 10809 PetscFunctionBegin; 10810 PetscCall(PetscLogEventBegin(MAT_TransposeColoringCreate, mat, 0, 0, 0)); 10811 PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 10812 PetscCall(PetscHeaderCreate(c, MAT_TRANSPOSECOLORING_CLASSID, "MatTransposeColoring", "Matrix product C=A*B^T via coloring", "Mat", comm, MatTransposeColoringDestroy, NULL)); 10813 10814 c->ctype = iscoloring->ctype; 10815 PetscUseTypeMethod(mat, transposecoloringcreate, iscoloring, c); 10816 10817 *color = c; 10818 PetscCall(PetscLogEventEnd(MAT_TransposeColoringCreate, mat, 0, 0, 0)); 10819 PetscFunctionReturn(PETSC_SUCCESS); 10820 } 10821 10822 /*@ 10823 MatGetNonzeroState - Returns a 64-bit integer representing the current state of nonzeros in the matrix. If the 10824 matrix has had no new nonzero locations added to (or removed from) the matrix since the previous call then the value will be the 10825 same, otherwise it will be larger 10826 10827 Not Collective 10828 10829 Input Parameter: 10830 . mat - the matrix 10831 10832 Output Parameter: 10833 . state - the current state 10834 10835 Level: intermediate 10836 10837 Notes: 10838 You can only compare states from two different calls to the SAME matrix, you cannot compare calls between 10839 different matrices 10840 10841 Use `PetscObjectStateGet()` to check for changes to the numerical values in a matrix 10842 10843 Use the result of `PetscObjectGetId()` to compare if a previously checked matrix is the same as the current matrix, do not compare object pointers. 10844 10845 .seealso: [](ch_matrices), `Mat`, `PetscObjectStateGet()`, `PetscObjectGetId()` 10846 @*/ 10847 PetscErrorCode MatGetNonzeroState(Mat mat, PetscObjectState *state) 10848 { 10849 PetscFunctionBegin; 10850 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 10851 *state = mat->nonzerostate; 10852 PetscFunctionReturn(PETSC_SUCCESS); 10853 } 10854 10855 /*@ 10856 MatCreateMPIMatConcatenateSeqMat - Creates a single large PETSc matrix by concatenating sequential 10857 matrices from each processor 10858 10859 Collective 10860 10861 Input Parameters: 10862 + comm - the communicators the parallel matrix will live on 10863 . seqmat - the input sequential matrices 10864 . n - number of local columns (or `PETSC_DECIDE`) 10865 - reuse - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 10866 10867 Output Parameter: 10868 . mpimat - the parallel matrix generated 10869 10870 Level: developer 10871 10872 Note: 10873 The number of columns of the matrix in EACH processor MUST be the same. 10874 10875 .seealso: [](ch_matrices), `Mat` 10876 @*/ 10877 PetscErrorCode MatCreateMPIMatConcatenateSeqMat(MPI_Comm comm, Mat seqmat, PetscInt n, MatReuse reuse, Mat *mpimat) 10878 { 10879 PetscMPIInt size; 10880 10881 PetscFunctionBegin; 10882 PetscCallMPI(MPI_Comm_size(comm, &size)); 10883 if (size == 1) { 10884 if (reuse == MAT_INITIAL_MATRIX) { 10885 PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat)); 10886 } else { 10887 PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN)); 10888 } 10889 PetscFunctionReturn(PETSC_SUCCESS); 10890 } 10891 10892 PetscCheck(reuse != MAT_REUSE_MATRIX || seqmat != *mpimat, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "MAT_REUSE_MATRIX means reuse the matrix passed in as the final argument, not the original matrix"); 10893 10894 PetscCall(PetscLogEventBegin(MAT_Merge, seqmat, 0, 0, 0)); 10895 PetscCall((*seqmat->ops->creatempimatconcatenateseqmat)(comm, seqmat, n, reuse, mpimat)); 10896 PetscCall(PetscLogEventEnd(MAT_Merge, seqmat, 0, 0, 0)); 10897 PetscFunctionReturn(PETSC_SUCCESS); 10898 } 10899 10900 /*@ 10901 MatSubdomainsCreateCoalesce - Creates index subdomains by coalescing adjacent MPI processes' ownership ranges. 10902 10903 Collective 10904 10905 Input Parameters: 10906 + A - the matrix to create subdomains from 10907 - N - requested number of subdomains 10908 10909 Output Parameters: 10910 + n - number of subdomains resulting on this MPI process 10911 - iss - `IS` list with indices of subdomains on this MPI process 10912 10913 Level: advanced 10914 10915 Note: 10916 The number of subdomains must be smaller than the communicator size 10917 10918 .seealso: [](ch_matrices), `Mat`, `IS` 10919 @*/ 10920 PetscErrorCode MatSubdomainsCreateCoalesce(Mat A, PetscInt N, PetscInt *n, IS *iss[]) 10921 { 10922 MPI_Comm comm, subcomm; 10923 PetscMPIInt size, rank, color; 10924 PetscInt rstart, rend, k; 10925 10926 PetscFunctionBegin; 10927 PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 10928 PetscCallMPI(MPI_Comm_size(comm, &size)); 10929 PetscCallMPI(MPI_Comm_rank(comm, &rank)); 10930 PetscCheck(N >= 1 && N < (PetscInt)size, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "number of subdomains must be > 0 and < %d, got N = %" PetscInt_FMT, size, N); 10931 *n = 1; 10932 k = ((PetscInt)size) / N + ((PetscInt)size % N > 0); /* There are up to k ranks to a color */ 10933 color = rank / k; 10934 PetscCallMPI(MPI_Comm_split(comm, color, rank, &subcomm)); 10935 PetscCall(PetscMalloc1(1, iss)); 10936 PetscCall(MatGetOwnershipRange(A, &rstart, &rend)); 10937 PetscCall(ISCreateStride(subcomm, rend - rstart, rstart, 1, iss[0])); 10938 PetscCallMPI(MPI_Comm_free(&subcomm)); 10939 PetscFunctionReturn(PETSC_SUCCESS); 10940 } 10941 10942 /*@ 10943 MatGalerkin - Constructs the coarse grid problem matrix via Galerkin projection. 10944 10945 If the interpolation and restriction operators are the same, uses `MatPtAP()`. 10946 If they are not the same, uses `MatMatMatMult()`. 10947 10948 Once the coarse grid problem is constructed, correct for interpolation operators 10949 that are not of full rank, which can legitimately happen in the case of non-nested 10950 geometric multigrid. 10951 10952 Input Parameters: 10953 + restrct - restriction operator 10954 . dA - fine grid matrix 10955 . interpolate - interpolation operator 10956 . reuse - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 10957 - fill - expected fill, use `PETSC_DEFAULT` if you do not have a good estimate 10958 10959 Output Parameter: 10960 . A - the Galerkin coarse matrix 10961 10962 Options Database Key: 10963 . -pc_mg_galerkin <both,pmat,mat,none> - for what matrices the Galerkin process should be used 10964 10965 Level: developer 10966 10967 .seealso: [](ch_matrices), `Mat`, `MatPtAP()`, `MatMatMatMult()` 10968 @*/ 10969 PetscErrorCode MatGalerkin(Mat restrct, Mat dA, Mat interpolate, MatReuse reuse, PetscReal fill, Mat *A) 10970 { 10971 IS zerorows; 10972 Vec diag; 10973 10974 PetscFunctionBegin; 10975 PetscCheck(reuse != MAT_INPLACE_MATRIX, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Inplace product not supported"); 10976 /* Construct the coarse grid matrix */ 10977 if (interpolate == restrct) { 10978 PetscCall(MatPtAP(dA, interpolate, reuse, fill, A)); 10979 } else { 10980 PetscCall(MatMatMatMult(restrct, dA, interpolate, reuse, fill, A)); 10981 } 10982 10983 /* If the interpolation matrix is not of full rank, A will have zero rows. 10984 This can legitimately happen in the case of non-nested geometric multigrid. 10985 In that event, we set the rows of the matrix to the rows of the identity, 10986 ignoring the equations (as the RHS will also be zero). */ 10987 10988 PetscCall(MatFindZeroRows(*A, &zerorows)); 10989 10990 if (zerorows != NULL) { /* if there are any zero rows */ 10991 PetscCall(MatCreateVecs(*A, &diag, NULL)); 10992 PetscCall(MatGetDiagonal(*A, diag)); 10993 PetscCall(VecISSet(diag, zerorows, 1.0)); 10994 PetscCall(MatDiagonalSet(*A, diag, INSERT_VALUES)); 10995 PetscCall(VecDestroy(&diag)); 10996 PetscCall(ISDestroy(&zerorows)); 10997 } 10998 PetscFunctionReturn(PETSC_SUCCESS); 10999 } 11000 11001 /*@C 11002 MatSetOperation - Allows user to set a matrix operation for any matrix type 11003 11004 Logically Collective 11005 11006 Input Parameters: 11007 + mat - the matrix 11008 . op - the name of the operation 11009 - f - the function that provides the operation 11010 11011 Level: developer 11012 11013 Example Usage: 11014 .vb 11015 extern PetscErrorCode usermult(Mat, Vec, Vec); 11016 11017 PetscCall(MatCreateXXX(comm, ..., &A)); 11018 PetscCall(MatSetOperation(A, MATOP_MULT, (PetscVoidFunction)usermult)); 11019 .ve 11020 11021 Notes: 11022 See the file `include/petscmat.h` for a complete list of matrix 11023 operations, which all have the form MATOP_<OPERATION>, where 11024 <OPERATION> is the name (in all capital letters) of the 11025 user interface routine (e.g., `MatMult()` -> `MATOP_MULT`). 11026 11027 All user-provided functions (except for `MATOP_DESTROY`) should have the same calling 11028 sequence as the usual matrix interface routines, since they 11029 are intended to be accessed via the usual matrix interface 11030 routines, e.g., 11031 .vb 11032 MatMult(Mat, Vec, Vec) -> usermult(Mat, Vec, Vec) 11033 .ve 11034 11035 In particular each function MUST return `PETSC_SUCCESS` on success and 11036 nonzero on failure. 11037 11038 This routine is distinct from `MatShellSetOperation()` in that it can be called on any matrix type. 11039 11040 .seealso: [](ch_matrices), `Mat`, `MatGetOperation()`, `MatCreateShell()`, `MatShellSetContext()`, `MatShellSetOperation()` 11041 @*/ 11042 PetscErrorCode MatSetOperation(Mat mat, MatOperation op, void (*f)(void)) 11043 { 11044 PetscFunctionBegin; 11045 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 11046 if (op == MATOP_VIEW && !mat->ops->viewnative && f != (void (*)(void))(mat->ops->view)) mat->ops->viewnative = mat->ops->view; 11047 (((void (**)(void))mat->ops)[op]) = f; 11048 PetscFunctionReturn(PETSC_SUCCESS); 11049 } 11050 11051 /*@C 11052 MatGetOperation - Gets a matrix operation for any matrix type. 11053 11054 Not Collective 11055 11056 Input Parameters: 11057 + mat - the matrix 11058 - op - the name of the operation 11059 11060 Output Parameter: 11061 . f - the function that provides the operation 11062 11063 Level: developer 11064 11065 Example Usage: 11066 .vb 11067 PetscErrorCode (*usermult)(Mat, Vec, Vec); 11068 11069 MatGetOperation(A, MATOP_MULT, (void (**)(void))&usermult); 11070 .ve 11071 11072 Notes: 11073 See the file include/petscmat.h for a complete list of matrix 11074 operations, which all have the form MATOP_<OPERATION>, where 11075 <OPERATION> is the name (in all capital letters) of the 11076 user interface routine (e.g., `MatMult()` -> `MATOP_MULT`). 11077 11078 This routine is distinct from `MatShellGetOperation()` in that it can be called on any matrix type. 11079 11080 .seealso: [](ch_matrices), `Mat`, `MatSetOperation()`, `MatCreateShell()`, `MatShellGetContext()`, `MatShellGetOperation()` 11081 @*/ 11082 PetscErrorCode MatGetOperation(Mat mat, MatOperation op, void (**f)(void)) 11083 { 11084 PetscFunctionBegin; 11085 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 11086 *f = (((void (**)(void))mat->ops)[op]); 11087 PetscFunctionReturn(PETSC_SUCCESS); 11088 } 11089 11090 /*@ 11091 MatHasOperation - Determines whether the given matrix supports the particular operation. 11092 11093 Not Collective 11094 11095 Input Parameters: 11096 + mat - the matrix 11097 - op - the operation, for example, `MATOP_GET_DIAGONAL` 11098 11099 Output Parameter: 11100 . has - either `PETSC_TRUE` or `PETSC_FALSE` 11101 11102 Level: advanced 11103 11104 Note: 11105 See `MatSetOperation()` for additional discussion on naming convention and usage of `op`. 11106 11107 .seealso: [](ch_matrices), `Mat`, `MatCreateShell()`, `MatGetOperation()`, `MatSetOperation()` 11108 @*/ 11109 PetscErrorCode MatHasOperation(Mat mat, MatOperation op, PetscBool *has) 11110 { 11111 PetscFunctionBegin; 11112 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 11113 PetscAssertPointer(has, 3); 11114 if (mat->ops->hasoperation) { 11115 PetscUseTypeMethod(mat, hasoperation, op, has); 11116 } else { 11117 if (((void **)mat->ops)[op]) *has = PETSC_TRUE; 11118 else { 11119 *has = PETSC_FALSE; 11120 if (op == MATOP_CREATE_SUBMATRIX) { 11121 PetscMPIInt size; 11122 11123 PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)mat), &size)); 11124 if (size == 1) PetscCall(MatHasOperation(mat, MATOP_CREATE_SUBMATRICES, has)); 11125 } 11126 } 11127 } 11128 PetscFunctionReturn(PETSC_SUCCESS); 11129 } 11130 11131 /*@ 11132 MatHasCongruentLayouts - Determines whether the rows and columns layouts of the matrix are congruent 11133 11134 Collective 11135 11136 Input Parameter: 11137 . mat - the matrix 11138 11139 Output Parameter: 11140 . cong - either `PETSC_TRUE` or `PETSC_FALSE` 11141 11142 Level: beginner 11143 11144 .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatSetSizes()`, `PetscLayout` 11145 @*/ 11146 PetscErrorCode MatHasCongruentLayouts(Mat mat, PetscBool *cong) 11147 { 11148 PetscFunctionBegin; 11149 PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 11150 PetscValidType(mat, 1); 11151 PetscAssertPointer(cong, 2); 11152 if (!mat->rmap || !mat->cmap) { 11153 *cong = mat->rmap == mat->cmap ? PETSC_TRUE : PETSC_FALSE; 11154 PetscFunctionReturn(PETSC_SUCCESS); 11155 } 11156 if (mat->congruentlayouts == PETSC_DECIDE) { /* first time we compare rows and cols layouts */ 11157 PetscCall(PetscLayoutSetUp(mat->rmap)); 11158 PetscCall(PetscLayoutSetUp(mat->cmap)); 11159 PetscCall(PetscLayoutCompare(mat->rmap, mat->cmap, cong)); 11160 if (*cong) mat->congruentlayouts = 1; 11161 else mat->congruentlayouts = 0; 11162 } else *cong = mat->congruentlayouts ? PETSC_TRUE : PETSC_FALSE; 11163 PetscFunctionReturn(PETSC_SUCCESS); 11164 } 11165 11166 PetscErrorCode MatSetInf(Mat A) 11167 { 11168 PetscFunctionBegin; 11169 PetscUseTypeMethod(A, setinf); 11170 PetscFunctionReturn(PETSC_SUCCESS); 11171 } 11172 11173 /*@C 11174 MatCreateGraph - create a scalar matrix (that is a matrix with one vertex for each block vertex in the original matrix), for use in graph algorithms 11175 and possibly removes small values from the graph structure. 11176 11177 Collective 11178 11179 Input Parameters: 11180 + A - the matrix 11181 . sym - `PETSC_TRUE` indicates that the graph should be symmetrized 11182 . scale - `PETSC_TRUE` indicates that the graph edge weights should be symmetrically scaled with the diagonal entry 11183 . filter - filter value - < 0: does nothing; == 0: removes only 0.0 entries; otherwise: removes entries with abs(entries) <= value 11184 . num_idx - size of 'index' array 11185 - index - array of block indices to use for graph strength of connection weight 11186 11187 Output Parameter: 11188 . graph - the resulting graph 11189 11190 Level: advanced 11191 11192 .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `PCGAMG` 11193 @*/ 11194 PetscErrorCode MatCreateGraph(Mat A, PetscBool sym, PetscBool scale, PetscReal filter, PetscInt num_idx, PetscInt index[], Mat *graph) 11195 { 11196 PetscFunctionBegin; 11197 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 11198 PetscValidType(A, 1); 11199 PetscValidLogicalCollectiveBool(A, scale, 3); 11200 PetscAssertPointer(graph, 7); 11201 PetscUseTypeMethod(A, creategraph, sym, scale, filter, num_idx, index, graph); 11202 PetscFunctionReturn(PETSC_SUCCESS); 11203 } 11204 11205 /*@ 11206 MatEliminateZeros - eliminate the nondiagonal zero entries in place from the nonzero structure of a sparse `Mat` in place, 11207 meaning the same memory is used for the matrix, and no new memory is allocated. 11208 11209 Collective 11210 11211 Input Parameters: 11212 + A - the matrix 11213 - keep - if for a given row of `A`, the diagonal coefficient is zero, indicates whether it should be left in the structure or eliminated as well 11214 11215 Level: intermediate 11216 11217 Developer Note: 11218 The entries in the sparse matrix data structure are shifted to fill in the unneeded locations in the data. Thus the end 11219 of the arrays in the data structure are unneeded. 11220 11221 .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateGraph()`, `MatFilter()` 11222 @*/ 11223 PetscErrorCode MatEliminateZeros(Mat A, PetscBool keep) 11224 { 11225 PetscFunctionBegin; 11226 PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 11227 PetscUseTypeMethod(A, eliminatezeros, keep); 11228 PetscFunctionReturn(PETSC_SUCCESS); 11229 } 11230