1 static char help[] = "Tests MATHTOOL with a derived htool::IMatrix<PetscScalar> class\n\n"; 2 3 #include <petscmat.h> 4 #include <htool/misc/petsc.hpp> 5 6 static PetscErrorCode GenEntries(PetscInt sdim,PetscInt M,PetscInt N,const PetscInt *J,const PetscInt *K,PetscScalar *ptr,void *ctx) 7 { 8 PetscInt d,j,k; 9 PetscReal diff = 0.0,*coords = (PetscReal*)(ctx); 10 11 PetscFunctionBeginUser; 12 for (j = 0; j < M; j++) { 13 for (k = 0; k < N; k++) { 14 diff = 0.0; 15 for (d = 0; d < sdim; d++) diff += (coords[J[j]*sdim+d] - coords[K[k]*sdim+d]) * (coords[J[j]*sdim+d] - coords[K[k]*sdim+d]); 16 ptr[j+M*k] = 1.0/(1.0e-2 + PetscSqrtReal(diff)); 17 } 18 } 19 PetscFunctionReturn(0); 20 } 21 class MyIMatrix : public htool::VirtualGenerator<PetscScalar> { 22 private: 23 PetscReal *coords; 24 PetscInt sdim; 25 public: 26 MyIMatrix(PetscInt M,PetscInt N,PetscInt spacedim,PetscReal* gcoords) : htool::VirtualGenerator<PetscScalar>(M,N),coords(gcoords),sdim(spacedim) { } 27 28 void copy_submatrix(PetscInt M,PetscInt N,const PetscInt *J,const PetscInt *K,PetscScalar *ptr) const override 29 { 30 PetscReal diff = 0.0; 31 32 PetscFunctionBeginUser; 33 for (PetscInt j = 0; j < M; j++) /* could be optimized by the user how they see fit, e.g., vectorization */ 34 for (PetscInt k = 0; k < N; k++) { 35 diff = 0.0; 36 for (PetscInt d = 0; d < sdim; d++) diff += (coords[J[j]*sdim+d] - coords[K[k]*sdim+d]) * (coords[J[j]*sdim+d] - coords[K[k]*sdim+d]); 37 ptr[j+M*k] = 1.0/(1.0e-2 + PetscSqrtReal(diff)); 38 } 39 PetscFunctionReturnVoid(); 40 } 41 }; 42 43 int main(int argc,char **argv) 44 { 45 Mat A,B,P,R; 46 PetscInt m = 100,dim = 3,M,begin = 0; 47 PetscMPIInt size; 48 PetscReal *coords,*gcoords,norm,epsilon,relative; 49 PetscBool sym = PETSC_FALSE; 50 PetscRandom rdm; 51 MatHtoolKernel kernel = GenEntries; 52 MyIMatrix *imatrix; 53 PetscErrorCode ierr; 54 55 ierr = PetscInitialize(&argc,&argv,(char*)NULL,help);if (ierr) return ierr; 56 ierr = PetscOptionsGetInt(NULL,NULL,"-m_local",&m,NULL);CHKERRQ(ierr); 57 ierr = PetscOptionsGetInt(NULL,NULL,"-dim",&dim,NULL);CHKERRQ(ierr); 58 ierr = PetscOptionsGetBool(NULL,NULL,"-symmetric",&sym,NULL);CHKERRQ(ierr); 59 ierr = PetscOptionsGetReal(NULL,NULL,"-mat_htool_epsilon",&epsilon,NULL);CHKERRQ(ierr); 60 ierr = MPI_Comm_size(PETSC_COMM_WORLD,&size);CHKERRMPI(ierr); 61 M = size*m; 62 ierr = PetscOptionsGetInt(NULL,NULL,"-M",&M,NULL);CHKERRQ(ierr); 63 ierr = PetscMalloc1(m*dim,&coords);CHKERRQ(ierr); 64 ierr = PetscRandomCreate(PETSC_COMM_WORLD,&rdm);CHKERRQ(ierr); 65 ierr = PetscRandomGetValuesReal(rdm,m*dim,coords);CHKERRQ(ierr); 66 ierr = PetscCalloc1(M*dim,&gcoords);CHKERRQ(ierr); 67 ierr = MPI_Exscan(&m,&begin,1,MPIU_INT,MPI_SUM,PETSC_COMM_WORLD);CHKERRMPI(ierr); 68 ierr = PetscArraycpy(gcoords+begin*dim,coords,m*dim);CHKERRQ(ierr); 69 ierr = MPIU_Allreduce(MPI_IN_PLACE,gcoords,M*dim,MPIU_REAL,MPI_SUM,PETSC_COMM_WORLD);CHKERRMPI(ierr); 70 imatrix = new MyIMatrix(M,M,dim,gcoords); 71 ierr = MatCreateHtoolFromKernel(PETSC_COMM_WORLD,m,m,M,M,dim,coords,coords,NULL,imatrix,&A);CHKERRQ(ierr); /* block-wise assembly using htool::IMatrix<PetscScalar>::copy_submatrix() */ 72 ierr = MatSetOption(A,MAT_SYMMETRIC,sym);CHKERRQ(ierr); 73 ierr = MatSetFromOptions(A);CHKERRQ(ierr); 74 ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 75 ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 76 ierr = MatViewFromOptions(A,NULL,"-A_view");CHKERRQ(ierr); 77 ierr = MatCreateHtoolFromKernel(PETSC_COMM_WORLD,m,m,M,M,dim,coords,coords,kernel,gcoords,&B);CHKERRQ(ierr); /* entry-wise assembly using GenEntries() */ 78 ierr = MatSetOption(B,MAT_SYMMETRIC,sym);CHKERRQ(ierr); 79 ierr = MatSetFromOptions(B);CHKERRQ(ierr); 80 ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 81 ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 82 ierr = MatViewFromOptions(B,NULL,"-B_view");CHKERRQ(ierr); 83 ierr = MatConvert(A,MATDENSE,MAT_INITIAL_MATRIX,&P);CHKERRQ(ierr); 84 ierr = MatNorm(P,NORM_FROBENIUS,&relative);CHKERRQ(ierr); 85 ierr = MatConvert(B,MATDENSE,MAT_INITIAL_MATRIX,&R);CHKERRQ(ierr); 86 ierr = MatAXPY(R,-1.0,P,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 87 ierr = MatNorm(R,NORM_INFINITY,&norm);CHKERRQ(ierr); 88 if (PetscAbsReal(norm/relative) > epsilon) SETERRQ2(PETSC_COMM_WORLD,PETSC_ERR_PLIB,"||A(!symmetric)-A(symmetric)|| = %g (> %g)",(double)PetscAbsReal(norm/relative),(double)epsilon); 89 ierr = MatDestroy(&B);CHKERRQ(ierr); 90 ierr = MatDestroy(&R);CHKERRQ(ierr); 91 ierr = MatDestroy(&P);CHKERRQ(ierr); 92 ierr = PetscRandomDestroy(&rdm);CHKERRQ(ierr); 93 ierr = MatDestroy(&A);CHKERRQ(ierr); 94 ierr = PetscFree(gcoords);CHKERRQ(ierr); 95 ierr = PetscFree(coords);CHKERRQ(ierr); 96 delete imatrix; 97 ierr = PetscFinalize(); 98 return ierr; 99 } 100 101 /*TEST 102 103 build: 104 requires: htool 105 test: 106 requires: htool 107 suffix: 2 108 nsize: 4 109 args: -m_local 120 -mat_htool_epsilon 1.0e-2 -symmetric {{false true}shared output} 110 output_file: output/ex101.out 111 112 TEST*/ 113