xref: /petsc/src/mat/tests/mmloader.c (revision 970231d20df44f79b27787157e39d441e79f434b)

#include "mmloader.h"

PetscErrorCode MatCreateFromMTX(Mat *A, const char *filein, PetscBool aijonly)
{
  MM_typecode  matcode;
  FILE        *file;
  PetscInt     M, N, ninput;
  PetscInt    *ia, *ja;
  PetscInt     i, j, nz, *rownz;
  PetscScalar *val;
  PetscBool    sametype, symmetric = PETSC_FALSE, skew = PETSC_FALSE;

  /* Read in matrix */
  PetscFunctionBeginUser;
  PetscCall(PetscFOpen(PETSC_COMM_SELF, filein, "r", &file));
  PetscCheck(mm_read_banner(file, &matcode) == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not process Matrix Market banner.");
  /*  This is how one can screen matrix types if their application */
  /*  only supports a subset of the Matrix Market data types.      */
  PetscCheck(mm_is_matrix(matcode) && mm_is_sparse(matcode) && (mm_is_real(matcode) || mm_is_integer(matcode)), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Input must be a sparse real or integer matrix. Market Market type: [%s]", mm_typecode_to_str(matcode));

  if (mm_is_symmetric(matcode)) symmetric = PETSC_TRUE;
  if (mm_is_skew(matcode)) skew = PETSC_TRUE;

  /* Find out size of sparse matrix .... */
  PetscCheck(mm_read_mtx_crd_size(file, &M, &N, &nz) == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Size of sparse matrix is wrong.");

  /* Reserve memory for matrices */
  PetscCall(PetscMalloc4(nz, &ia, nz, &ja, nz, &val, M, &rownz));
  for (i = 0; i < M; i++) rownz[i] = 0;

  /* NOTE: when reading in doubles, ANSI C requires the use of the "l"  */
  /*   specifier as in "%lg", "%lf", "%le", otherwise errors will occur */
  /*  (ANSI C X3.159-1989, Sec. 4.9.6.2, p. 136 lines 13-15)            */
  for (i = 0; i < nz; i++) {
    ninput = fscanf(file, "%d %d %lg\n", &ia[i], &ja[i], &val[i]);
    PetscCheck(ninput >= 3, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Badly formatted input file");
    ia[i]--;
    ja[i]--;                              /* adjust from 1-based to 0-based */
    if ((symmetric && aijonly) || skew) { /* transpose */
      rownz[ia[i]]++;
      if (ja[i] != ia[i]) rownz[ja[i]]++;
    } else {
      if (symmetric) rownz[ja[i]]++;
      else rownz[ia[i]]++;
    }
  }
  PetscCall(PetscFClose(PETSC_COMM_SELF, file));

  /* Create, preallocate, and then assemble the matrix */
  PetscCall(MatCreate(PETSC_COMM_SELF, A));
  PetscCall(MatSetSizes(*A, PETSC_DECIDE, PETSC_DECIDE, M, N));

  if (symmetric && !aijonly) {
    PetscCall(MatSetType(*A, MATSEQSBAIJ));
    PetscCall(MatSetFromOptions(*A));
    PetscCall(MatSeqSBAIJSetPreallocation(*A, 1, 0, rownz));
    PetscCall(PetscObjectTypeCompare((PetscObject)*A, MATSEQSBAIJ, &sametype));
    PetscCheck(sametype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Only AIJ and SBAIJ are supported. Your mattype is not supported");
  } else {
    PetscCall(MatSetType(*A, MATSEQAIJ));
    PetscCall(MatSetFromOptions(*A));
    PetscCall(MatSeqAIJSetPreallocation(*A, 0, rownz));
    PetscCall(PetscObjectTypeCompare((PetscObject)*A, MATSEQAIJ, &sametype));
    PetscCheck(sametype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Only AIJ and SBAIJ are supported. Your mattype is not supported");
  }
  /* Add values to the matrix, these correspond to lower triangular part for symmetric or skew matrices */
  if (!(symmetric && !aijonly))
    for (j = 0; j < nz; j++) PetscCall(MatSetValues(*A, 1, &ia[j], 1, &ja[j], &val[j], INSERT_VALUES));

  /* Add values to upper triangular part for some cases */
  if (symmetric && !aijonly) {
    /* MatrixMarket matrix stores symm matrix in lower triangular part. Take its transpose */
    for (j = 0; j < nz; j++) PetscCall(MatSetValues(*A, 1, &ja[j], 1, &ia[j], &val[j], INSERT_VALUES));
  }
  if (skew) {
    for (j = 0; j < nz; j++) {
      val[j] = -val[j];
      PetscCall(MatSetValues(*A, 1, &ja[j], 1, &ia[j], &val[j], INSERT_VALUES));
    }
  }
  PetscCall(MatAssemblyBegin(*A, MAT_FINAL_ASSEMBLY));
  PetscCall(MatAssemblyEnd(*A, MAT_FINAL_ASSEMBLY));
  PetscCall(PetscFree4(ia, ja, val, rownz));
  PetscFunctionReturn(PETSC_SUCCESS);
}