1be1d678aSKris Buschelman #define PETSCMAT_DLL 27807a1faSBarry Smith 37c4f633dSBarry Smith #include "private/matimpl.h" /*I "petscmat.h" I*/ 47807a1faSBarry Smith 57adad957SLisandro Dalcin #if 0 64a2ae208SSatish Balay #undef __FUNCT__ 74a2ae208SSatish Balay #define __FUNCT__ "MatPublish_Base" 86849ba73SBarry Smith static PetscErrorCode MatPublish_Base(PetscObject obj) 935d8aa7fSBarry Smith { 1035d8aa7fSBarry Smith PetscFunctionBegin; 1135d8aa7fSBarry Smith PetscFunctionReturn(0); 1235d8aa7fSBarry Smith } 137adad957SLisandro Dalcin #endif 1435d8aa7fSBarry Smith 154a2ae208SSatish Balay #undef __FUNCT__ 164a2ae208SSatish Balay #define __FUNCT__ "MatCreate" 1705869f15SSatish Balay /*@ 1869dd0797SLois Curfman McInnes MatCreate - Creates a matrix where the type is determined 197e5f4302SBarry Smith from either a call to MatSetType() or from the options database 207e5f4302SBarry Smith with a call to MatSetFromOptions(). The default matrix type is 217e5f4302SBarry Smith AIJ, using the routines MatCreateSeqAIJ() or MatCreateMPIAIJ() 227e5f4302SBarry Smith if you do not set a type in the options database. If you never 237e5f4302SBarry Smith call MatSetType() or MatSetFromOptions() it will generate an 24f8ab6608SSatish Balay error when you try to use the matrix. 2583e1b59cSLois Curfman McInnes 26cb13003dSBarry Smith Collective on MPI_Comm 27cb13003dSBarry Smith 28f69a0ea3SMatthew Knepley Input Parameter: 29f69a0ea3SMatthew Knepley . comm - MPI communicator 307807a1faSBarry Smith 317807a1faSBarry Smith Output Parameter: 32dc401e71SLois Curfman McInnes . A - the matrix 33e0b365e2SLois Curfman McInnes 34273d9f13SBarry Smith Options Database Keys: 35273d9f13SBarry Smith + -mat_type seqaij - AIJ type, uses MatCreateSeqAIJ() 36273d9f13SBarry Smith . -mat_type mpiaij - AIJ type, uses MatCreateMPIAIJ() 37273d9f13SBarry Smith . -mat_type seqdense - dense type, uses MatCreateSeqDense() 38273d9f13SBarry Smith . -mat_type mpidense - dense type, uses MatCreateMPIDense() 39273d9f13SBarry Smith . -mat_type seqbaij - block AIJ type, uses MatCreateSeqBAIJ() 40273d9f13SBarry Smith - -mat_type mpibaij - block AIJ type, uses MatCreateMPIBAIJ() 41e0b365e2SLois Curfman McInnes 4283e1b59cSLois Curfman McInnes Even More Options Database Keys: 4383e1b59cSLois Curfman McInnes See the manpages for particular formats (e.g., MatCreateSeqAIJ()) 4483e1b59cSLois Curfman McInnes for additional format-specific options. 45e0b365e2SLois Curfman McInnes 46bd9ce289SLois Curfman McInnes Notes: 47ec6e0d80SSatish Balay 48273d9f13SBarry Smith Level: beginner 49273d9f13SBarry Smith 50a2fc510eSBarry Smith User manual sections: 51a2fc510eSBarry Smith + sec_matcreate 52a2fc510eSBarry Smith - chapter_matrices 53a2fc510eSBarry Smith 54273d9f13SBarry Smith .keywords: matrix, create 55273d9f13SBarry Smith 56cd05a4c0SHong Zhang .seealso: MatCreateSeqAIJ(), MatCreateMPIAIJ(), 57273d9f13SBarry Smith MatCreateSeqDense(), MatCreateMPIDense(), 586531c467SSatish Balay MatCreateSeqBAIJ(), MatCreateMPIBAIJ(), 59273d9f13SBarry Smith MatCreateSeqSBAIJ(), MatCreateMPISBAIJ(), 60273d9f13SBarry Smith MatConvert() 61273d9f13SBarry Smith @*/ 62f69a0ea3SMatthew Knepley PetscErrorCode PETSCMAT_DLLEXPORT MatCreate(MPI_Comm comm,Mat *A) 63273d9f13SBarry Smith { 64273d9f13SBarry Smith Mat B; 65dfbe8321SBarry Smith PetscErrorCode ierr; 66273d9f13SBarry Smith 67273d9f13SBarry Smith PetscFunctionBegin; 68f69a0ea3SMatthew Knepley PetscValidPointer(A,2); 6997f1f81fSBarry Smith 708ba1e511SMatthew Knepley *A = PETSC_NULL; 718ba1e511SMatthew Knepley #ifndef PETSC_USE_DYNAMIC_LIBRARIES 728ba1e511SMatthew Knepley ierr = MatInitializePackage(PETSC_NULL);CHKERRQ(ierr); 738ba1e511SMatthew Knepley #endif 748ba1e511SMatthew Knepley 75*0700a824SBarry Smith ierr = PetscHeaderCreate(B,_p_Mat,struct _MatOps,MAT_CLASSID,0,"Mat",comm,MatDestroy,MatView);CHKERRQ(ierr); 7626283091SBarry Smith ierr = PetscLayoutCreate(comm,&B->rmap);CHKERRQ(ierr); 7726283091SBarry Smith ierr = PetscLayoutCreate(comm,&B->cmap);CHKERRQ(ierr); 78273d9f13SBarry Smith B->preallocated = PETSC_FALSE; 79273d9f13SBarry Smith *A = B; 80273d9f13SBarry Smith PetscFunctionReturn(0); 81273d9f13SBarry Smith } 82273d9f13SBarry Smith 834a2ae208SSatish Balay #undef __FUNCT__ 84f69a0ea3SMatthew Knepley #define __FUNCT__ "MatSetSizes" 85f69a0ea3SMatthew Knepley /*@ 86f69a0ea3SMatthew Knepley MatSetSizes - Sets the local and global sizes, and checks to determine compatibility 87f69a0ea3SMatthew Knepley 88f69a0ea3SMatthew Knepley Collective on Mat 89f69a0ea3SMatthew Knepley 90f69a0ea3SMatthew Knepley Input Parameters: 91f69a0ea3SMatthew Knepley + A - the matrix 92f69a0ea3SMatthew Knepley . m - number of local rows (or PETSC_DECIDE) 93f69a0ea3SMatthew Knepley . n - number of local columns (or PETSC_DECIDE) 94f69a0ea3SMatthew Knepley . M - number of global rows (or PETSC_DETERMINE) 95f69a0ea3SMatthew Knepley - N - number of global columns (or PETSC_DETERMINE) 96f69a0ea3SMatthew Knepley 97f69a0ea3SMatthew Knepley Notes: 98f69a0ea3SMatthew Knepley m (n) and M (N) cannot be both PETSC_DECIDE 99f69a0ea3SMatthew Knepley If one processor calls this with M (N) of PETSC_DECIDE then all processors must, otherwise the program will hang. 100f69a0ea3SMatthew Knepley 101f69a0ea3SMatthew Knepley If PETSC_DECIDE is not used for the arguments 'm' and 'n', then the 102f69a0ea3SMatthew Knepley user must ensure that they are chosen to be compatible with the 103f69a0ea3SMatthew Knepley vectors. To do this, one first considers the matrix-vector product 104f69a0ea3SMatthew Knepley 'y = A x'. The 'm' that is used in the above routine must match the 105f69a0ea3SMatthew Knepley local size used in the vector creation routine VecCreateMPI() for 'y'. 106f69a0ea3SMatthew Knepley Likewise, the 'n' used must match that used as the local size in 107f69a0ea3SMatthew Knepley VecCreateMPI() for 'x'. 108f69a0ea3SMatthew Knepley 109f69a0ea3SMatthew Knepley Level: beginner 110f69a0ea3SMatthew Knepley 111f69a0ea3SMatthew Knepley .seealso: MatGetSize(), PetscSplitOwnership() 112f69a0ea3SMatthew Knepley @*/ 113f69a0ea3SMatthew Knepley PetscErrorCode PETSCMAT_DLLEXPORT MatSetSizes(Mat A, PetscInt m, PetscInt n, PetscInt M, PetscInt N) 114f69a0ea3SMatthew Knepley { 115284134d9SBarry Smith PetscErrorCode ierr; 116284134d9SBarry Smith 117f69a0ea3SMatthew Knepley PetscFunctionBegin; 118*0700a824SBarry Smith PetscValidHeaderSpecific(A,MAT_CLASSID,1); 119f69a0ea3SMatthew Knepley if (M > 0 && m > M) SETERRQ2(PETSC_ERR_ARG_INCOMP,"Local column size %D cannot be larger than global column size %D",m,M); 120f69a0ea3SMatthew Knepley if (N > 0 && n > N) SETERRQ2(PETSC_ERR_ARG_INCOMP,"Local row size %D cannot be larger than global row size %D",n,N); 121284134d9SBarry Smith if (A->ops->setsizes) { 122284134d9SBarry Smith /* Since this will not be set until the type has been set, this will NOT be called on the initial 123284134d9SBarry Smith call of MatSetSizes() (which must be called BEFORE MatSetType() */ 124284134d9SBarry Smith ierr = (*A->ops->setsizes)(A,m,n,M,N);CHKERRQ(ierr); 125284134d9SBarry Smith } else { 126d0f46423SBarry Smith if ((A->rmap->n >= 0 || A->rmap->N >= 0) && (A->rmap->n != m || A->rmap->N != M)) SETERRQ4(PETSC_ERR_SUP,"Cannot change/reset row sizes to %D local %D global after previously setting them to %D local %D global",m,M,A->rmap->n,A->rmap->N); 127d0f46423SBarry Smith if ((A->cmap->n >= 0 || A->cmap->N >= 0) && (A->cmap->n != n || A->cmap->N != N)) SETERRQ4(PETSC_ERR_SUP,"Cannot change/reset column sizes to %D local %D global after previously setting them to %D local %D global",n,N,A->cmap->n,A->cmap->N); 128284134d9SBarry Smith } 129d0f46423SBarry Smith A->rmap->n = m; 130d0f46423SBarry Smith A->cmap->n = n; 131d0f46423SBarry Smith A->rmap->N = M; 132d0f46423SBarry Smith A->cmap->N = N; 133117016b1SBarry Smith if (A->ops->create) { 134117016b1SBarry Smith ierr = (*A->ops->create)(A);CHKERRQ(ierr); 135117016b1SBarry Smith A->ops->create = 0; 136117016b1SBarry Smith } 137117016b1SBarry Smith 138f69a0ea3SMatthew Knepley PetscFunctionReturn(0); 139f69a0ea3SMatthew Knepley } 140f69a0ea3SMatthew Knepley 141f69a0ea3SMatthew Knepley #undef __FUNCT__ 1424a2ae208SSatish Balay #define __FUNCT__ "MatSetFromOptions" 14305869f15SSatish Balay /*@ 144273d9f13SBarry Smith MatSetFromOptions - Creates a matrix where the type is determined 145273d9f13SBarry Smith from the options database. Generates a parallel MPI matrix if the 146273d9f13SBarry Smith communicator has more than one processor. The default matrix type is 1477e5f4302SBarry Smith AIJ, using the routines MatCreateSeqAIJ() and MatCreateMPIAIJ() if 1487e5f4302SBarry Smith you do not select a type in the options database. 149273d9f13SBarry Smith 150273d9f13SBarry Smith Collective on Mat 151273d9f13SBarry Smith 152273d9f13SBarry Smith Input Parameter: 153273d9f13SBarry Smith . A - the matrix 154273d9f13SBarry Smith 155273d9f13SBarry Smith Options Database Keys: 156273d9f13SBarry Smith + -mat_type seqaij - AIJ type, uses MatCreateSeqAIJ() 157273d9f13SBarry Smith . -mat_type mpiaij - AIJ type, uses MatCreateMPIAIJ() 158273d9f13SBarry Smith . -mat_type seqdense - dense type, uses MatCreateSeqDense() 159273d9f13SBarry Smith . -mat_type mpidense - dense type, uses MatCreateMPIDense() 160273d9f13SBarry Smith . -mat_type seqbaij - block AIJ type, uses MatCreateSeqBAIJ() 161273d9f13SBarry Smith - -mat_type mpibaij - block AIJ type, uses MatCreateMPIBAIJ() 162273d9f13SBarry Smith 163273d9f13SBarry Smith Even More Options Database Keys: 164273d9f13SBarry Smith See the manpages for particular formats (e.g., MatCreateSeqAIJ()) 165273d9f13SBarry Smith for additional format-specific options. 166bd9ce289SLois Curfman McInnes 1671d69843bSLois Curfman McInnes Level: beginner 1681d69843bSLois Curfman McInnes 169dc401e71SLois Curfman McInnes .keywords: matrix, create 170e0b365e2SLois Curfman McInnes 171fafbff53SBarry Smith .seealso: MatCreateSeqAIJ((), MatCreateMPIAIJ(), 17239ddd567SLois Curfman McInnes MatCreateSeqDense(), MatCreateMPIDense(), 1736531c467SSatish Balay MatCreateSeqBAIJ(), MatCreateMPIBAIJ(), 174a209d233SLois Curfman McInnes MatCreateSeqSBAIJ(), MatCreateMPISBAIJ(), 175273d9f13SBarry Smith MatConvert() 1767807a1faSBarry Smith @*/ 177be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetFromOptions(Mat B) 1787807a1faSBarry Smith { 179dfbe8321SBarry Smith PetscErrorCode ierr; 180f3be49caSLisandro Dalcin const char *deft = MATAIJ; 181f3be49caSLisandro Dalcin char type[256]; 182273d9f13SBarry Smith PetscTruth flg; 183dbb450caSBarry Smith 1843a40ed3dSBarry Smith PetscFunctionBegin; 185*0700a824SBarry Smith PetscValidHeaderSpecific(B,MAT_CLASSID,1); 186f3be49caSLisandro Dalcin 187f3be49caSLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Matrix options","Mat");CHKERRQ(ierr); 188f3be49caSLisandro Dalcin ierr = PetscOptionsList("-mat_type","Matrix type","MatSetType",MatList,deft,type,256,&flg);CHKERRQ(ierr); 189273d9f13SBarry Smith if (flg) { 190f3be49caSLisandro Dalcin ierr = MatSetType(B,type);CHKERRQ(ierr); 191f3be49caSLisandro Dalcin } else if (!((PetscObject)B)->type_name) { 192f3be49caSLisandro Dalcin ierr = MatSetType(B,deft);CHKERRQ(ierr); 193273d9f13SBarry Smith } 194f3be49caSLisandro Dalcin 195f3be49caSLisandro Dalcin if (B->ops->setfromoptions) { 196f3be49caSLisandro Dalcin ierr = (*B->ops->setfromoptions)(B);CHKERRQ(ierr); 197593c1905SSatish Balay } 198f3be49caSLisandro Dalcin 199f3be49caSLisandro Dalcin ierr = PetscOptionsEnd();CHKERRQ(ierr); 200f3be49caSLisandro Dalcin 2013a40ed3dSBarry Smith PetscFunctionReturn(0); 2027807a1faSBarry Smith } 2037807a1faSBarry Smith 2044a2ae208SSatish Balay #undef __FUNCT__ 2054a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation" 206bc08b0f1SBarry Smith /*@ 207273d9f13SBarry Smith MatSetUpPreallocation 208dae03382SLois Curfman McInnes 209273d9f13SBarry Smith Collective on Mat 210dae03382SLois Curfman McInnes 211273d9f13SBarry Smith Input Parameter: 212273d9f13SBarry Smith . A - the matrix 213d5d45c9bSBarry Smith 214273d9f13SBarry Smith Level: beginner 215d5d45c9bSBarry Smith 216273d9f13SBarry Smith .keywords: matrix, create 217273d9f13SBarry Smith 218273d9f13SBarry Smith .seealso: MatCreateSeqAIJ((), MatCreateMPIAIJ(), 219273d9f13SBarry Smith MatCreateSeqDense(), MatCreateMPIDense(), 2206531c467SSatish Balay MatCreateSeqBAIJ(), MatCreateMPIBAIJ(), 221273d9f13SBarry Smith MatCreateSeqSBAIJ(), MatCreateMPISBAIJ(), 222273d9f13SBarry Smith MatConvert() 223273d9f13SBarry Smith @*/ 224be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetUpPreallocation(Mat B) 225273d9f13SBarry Smith { 226dfbe8321SBarry Smith PetscErrorCode ierr; 227273d9f13SBarry Smith 228273d9f13SBarry Smith PetscFunctionBegin; 22917667f90SBarry Smith if (!B->preallocated && B->ops->setuppreallocation) { 230ae15b995SBarry Smith ierr = PetscInfo(B,"Warning not preallocating matrix storage\n");CHKERRQ(ierr); 231273d9f13SBarry Smith ierr = (*B->ops->setuppreallocation)(B);CHKERRQ(ierr); 232273d9f13SBarry Smith } 233210f0121SBarry Smith B->preallocated = PETSC_TRUE; 234273d9f13SBarry Smith PetscFunctionReturn(0); 235273d9f13SBarry Smith } 236273d9f13SBarry Smith 237273d9f13SBarry Smith /* 238273d9f13SBarry Smith Copies from Cs header to A 239d0f46423SBarry Smith 240d0f46423SBarry Smith This is somewhat different from MatHeaderReplace() it would be nice to merge the code 241273d9f13SBarry Smith */ 2424a2ae208SSatish Balay #undef __FUNCT__ 2434a2ae208SSatish Balay #define __FUNCT__ "MatHeaderCopy" 244dfbe8321SBarry Smith PetscErrorCode MatHeaderCopy(Mat A,Mat C) 245273d9f13SBarry Smith { 246dfbe8321SBarry Smith PetscErrorCode ierr; 247d44834fbSBarry Smith PetscInt refct; 248273d9f13SBarry Smith PetscOps *Abops; 249273d9f13SBarry Smith MatOps Aops; 250273d9f13SBarry Smith char *mtype,*mname; 25130735b05SKris Buschelman void *spptr; 252273d9f13SBarry Smith 253273d9f13SBarry Smith PetscFunctionBegin; 254273d9f13SBarry Smith /* save the parts of A we need */ 2557adad957SLisandro Dalcin Abops = ((PetscObject)A)->bops; 256273d9f13SBarry Smith Aops = A->ops; 2577adad957SLisandro Dalcin refct = ((PetscObject)A)->refct; 2585c9eb25fSBarry Smith mtype = ((PetscObject)A)->type_name; 2595c9eb25fSBarry Smith mname = ((PetscObject)A)->name; 26030735b05SKris Buschelman spptr = A->spptr; 26130735b05SKris Buschelman 2625c9eb25fSBarry Smith /* zero these so the destroy below does not free them */ 2635c9eb25fSBarry Smith ((PetscObject)A)->type_name = 0; 2645c9eb25fSBarry Smith ((PetscObject)A)->name = 0; 2655c9eb25fSBarry Smith 2667c99f97cSSatish Balay /* free all the interior data structures from mat */ 2677c99f97cSSatish Balay ierr = (*A->ops->destroy)(A);CHKERRQ(ierr); 2687c99f97cSSatish Balay 26930735b05SKris Buschelman ierr = PetscFree(C->spptr);CHKERRQ(ierr); 27005b42c5fSBarry Smith 27126283091SBarry Smith ierr = PetscLayoutDestroy(A->rmap);CHKERRQ(ierr); 27226283091SBarry Smith ierr = PetscLayoutDestroy(A->cmap);CHKERRQ(ierr); 2735c9eb25fSBarry Smith ierr = PetscFListDestroy(&((PetscObject)A)->qlist);CHKERRQ(ierr); 2745c9eb25fSBarry Smith ierr = PetscOListDestroy(((PetscObject)A)->olist);CHKERRQ(ierr); 275273d9f13SBarry Smith 276273d9f13SBarry Smith /* copy C over to A */ 277273d9f13SBarry Smith ierr = PetscMemcpy(A,C,sizeof(struct _p_Mat));CHKERRQ(ierr); 278273d9f13SBarry Smith 279273d9f13SBarry Smith /* return the parts of A we saved */ 2807adad957SLisandro Dalcin ((PetscObject)A)->bops = Abops; 281273d9f13SBarry Smith A->ops = Aops; 2827adad957SLisandro Dalcin ((PetscObject)A)->refct = refct; 2837adad957SLisandro Dalcin ((PetscObject)A)->type_name = mtype; 2847adad957SLisandro Dalcin ((PetscObject)A)->name = mname; 28530735b05SKris Buschelman A->spptr = spptr; 286273d9f13SBarry Smith 2875c9eb25fSBarry Smith /* since these two are copied into A we do not want them destroyed in C */ 2885c9eb25fSBarry Smith ((PetscObject)C)->qlist = 0; 2895c9eb25fSBarry Smith ((PetscObject)C)->olist = 0; 290d38fa0fbSBarry Smith ierr = PetscHeaderDestroy(C);CHKERRQ(ierr); 291273d9f13SBarry Smith PetscFunctionReturn(0); 292273d9f13SBarry Smith } 2938ab5b326SKris Buschelman /* 2948ab5b326SKris Buschelman Replace A's header with that of C 2958ab5b326SKris Buschelman This is essentially code moved from MatDestroy 296d0f46423SBarry Smith 297d0f46423SBarry Smith This is somewhat different from MatHeaderCopy() it would be nice to merge the code 2988ab5b326SKris Buschelman */ 2998ab5b326SKris Buschelman #undef __FUNCT__ 3008ab5b326SKris Buschelman #define __FUNCT__ "MatHeaderReplace" 3018ab5b326SKris Buschelman PetscErrorCode MatHeaderReplace(Mat A,Mat C) 3028ab5b326SKris Buschelman { 3038ab5b326SKris Buschelman PetscErrorCode ierr; 3048ab5b326SKris Buschelman 3058ab5b326SKris Buschelman PetscFunctionBegin; 3066d7c1e57SBarry Smith if (A == C) PetscFunctionReturn(0); 3076d7c1e57SBarry Smith 3088ab5b326SKris Buschelman /* free all the interior data structures from mat */ 3098ab5b326SKris Buschelman ierr = (*A->ops->destroy)(A);CHKERRQ(ierr); 310d2c95936SBarry Smith ierr = PetscHeaderDestroy_Private((PetscObject)A);CHKERRQ(ierr); 311c650bb5fSLisandro Dalcin ierr = PetscFree(A->ops);CHKERRQ(ierr); 31226283091SBarry Smith ierr = PetscLayoutDestroy(A->rmap);CHKERRQ(ierr); 31326283091SBarry Smith ierr = PetscLayoutDestroy(A->cmap);CHKERRQ(ierr); 314d95db058SSatish Balay ierr = PetscFree(A->spptr);CHKERRQ(ierr); 3158ab5b326SKris Buschelman 3168ab5b326SKris Buschelman /* copy C over to A */ 3178ab5b326SKris Buschelman if (C) { 3188ab5b326SKris Buschelman ierr = PetscMemcpy(A,C,sizeof(struct _p_Mat));CHKERRQ(ierr); 3198ab5b326SKris Buschelman ierr = PetscLogObjectDestroy((PetscObject)C);CHKERRQ(ierr); 3208ab5b326SKris Buschelman ierr = PetscFree(C);CHKERRQ(ierr); 3218ab5b326SKris Buschelman } 3228ab5b326SKris Buschelman PetscFunctionReturn(0); 3238ab5b326SKris Buschelman } 324