1be1d678aSKris Buschelman #define PETSCMAT_DLL 27807a1faSBarry Smith 3273d9f13SBarry Smith #include "src/mat/matimpl.h" /*I "petscmat.h" I*/ 4325e03aeSBarry Smith #include "petscsys.h" 57807a1faSBarry Smith 64a2ae208SSatish Balay #undef __FUNCT__ 74a2ae208SSatish Balay #define __FUNCT__ "MatPublish_Base" 86849ba73SBarry Smith static PetscErrorCode MatPublish_Base(PetscObject obj) 935d8aa7fSBarry Smith { 1035d8aa7fSBarry Smith PetscFunctionBegin; 1135d8aa7fSBarry Smith PetscFunctionReturn(0); 1235d8aa7fSBarry Smith } 1335d8aa7fSBarry Smith 1435d8aa7fSBarry Smith 154a2ae208SSatish Balay #undef __FUNCT__ 164a2ae208SSatish Balay #define __FUNCT__ "MatCreate" 1705869f15SSatish Balay /*@ 1869dd0797SLois Curfman McInnes MatCreate - Creates a matrix where the type is determined 197e5f4302SBarry Smith from either a call to MatSetType() or from the options database 207e5f4302SBarry Smith with a call to MatSetFromOptions(). The default matrix type is 217e5f4302SBarry Smith AIJ, using the routines MatCreateSeqAIJ() or MatCreateMPIAIJ() 227e5f4302SBarry Smith if you do not set a type in the options database. If you never 237e5f4302SBarry Smith call MatSetType() or MatSetFromOptions() it will generate an 24f8ab6608SSatish Balay error when you try to use the matrix. 2583e1b59cSLois Curfman McInnes 26cb13003dSBarry Smith Collective on MPI_Comm 27cb13003dSBarry Smith 28f69a0ea3SMatthew Knepley Input Parameter: 29f69a0ea3SMatthew Knepley . comm - MPI communicator 307807a1faSBarry Smith 317807a1faSBarry Smith Output Parameter: 32dc401e71SLois Curfman McInnes . A - the matrix 33e0b365e2SLois Curfman McInnes 34273d9f13SBarry Smith Options Database Keys: 35273d9f13SBarry Smith + -mat_type seqaij - AIJ type, uses MatCreateSeqAIJ() 36273d9f13SBarry Smith . -mat_type mpiaij - AIJ type, uses MatCreateMPIAIJ() 37273d9f13SBarry Smith . -mat_type seqbdiag - block diagonal type, uses MatCreateSeqBDiag() 38273d9f13SBarry Smith . -mat_type mpibdiag - block diagonal type, uses MatCreateMPIBDiag() 39273d9f13SBarry Smith . -mat_type mpirowbs - rowbs type, uses MatCreateMPIRowbs() 40273d9f13SBarry Smith . -mat_type seqdense - dense type, uses MatCreateSeqDense() 41273d9f13SBarry Smith . -mat_type mpidense - dense type, uses MatCreateMPIDense() 42273d9f13SBarry Smith . -mat_type seqbaij - block AIJ type, uses MatCreateSeqBAIJ() 43273d9f13SBarry Smith - -mat_type mpibaij - block AIJ type, uses MatCreateMPIBAIJ() 44e0b365e2SLois Curfman McInnes 4583e1b59cSLois Curfman McInnes Even More Options Database Keys: 4683e1b59cSLois Curfman McInnes See the manpages for particular formats (e.g., MatCreateSeqAIJ()) 4783e1b59cSLois Curfman McInnes for additional format-specific options. 48e0b365e2SLois Curfman McInnes 49bd9ce289SLois Curfman McInnes Notes: 50ec6e0d80SSatish Balay 51273d9f13SBarry Smith Level: beginner 52273d9f13SBarry Smith 53a2fc510eSBarry Smith User manual sections: 54a2fc510eSBarry Smith + sec_matcreate 55a2fc510eSBarry Smith - chapter_matrices 56a2fc510eSBarry Smith 57273d9f13SBarry Smith .keywords: matrix, create 58273d9f13SBarry Smith 59273d9f13SBarry Smith .seealso: MatCreateSeqAIJ((), MatCreateMPIAIJ(), 60273d9f13SBarry Smith MatCreateSeqBDiag(),MatCreateMPIBDiag(), 61273d9f13SBarry Smith MatCreateSeqDense(), MatCreateMPIDense(), 62273d9f13SBarry Smith MatCreateMPIRowbs(), MatCreateSeqBAIJ(), MatCreateMPIBAIJ(), 63273d9f13SBarry Smith MatCreateSeqSBAIJ(), MatCreateMPISBAIJ(), 64273d9f13SBarry Smith MatConvert() 65273d9f13SBarry Smith @*/ 66f69a0ea3SMatthew Knepley PetscErrorCode PETSCMAT_DLLEXPORT MatCreate(MPI_Comm comm,Mat *A) 67273d9f13SBarry Smith { 68273d9f13SBarry Smith Mat B; 69dfbe8321SBarry Smith PetscErrorCode ierr; 70273d9f13SBarry Smith 71273d9f13SBarry Smith PetscFunctionBegin; 72f69a0ea3SMatthew Knepley PetscValidPointer(A,2); 7397f1f81fSBarry Smith 748ba1e511SMatthew Knepley *A = PETSC_NULL; 758ba1e511SMatthew Knepley #ifndef PETSC_USE_DYNAMIC_LIBRARIES 768ba1e511SMatthew Knepley ierr = MatInitializePackage(PETSC_NULL);CHKERRQ(ierr); 778ba1e511SMatthew Knepley #endif 788ba1e511SMatthew Knepley 7952e6d16bSBarry Smith ierr = PetscHeaderCreate(B,_p_Mat,struct _MatOps,MAT_COOKIE,0,"Mat",comm,MatDestroy,MatView);CHKERRQ(ierr); 80899cda47SBarry Smith B->rmap.n = -1; 81899cda47SBarry Smith B->rmap.N = -1; 82899cda47SBarry Smith B->cmap.n = -1; 83899cda47SBarry Smith B->cmap.N = -1; 84899cda47SBarry Smith B->rmap.bs = 1; 85899cda47SBarry Smith B->cmap.bs = 1; 86273d9f13SBarry Smith B->preallocated = PETSC_FALSE; 8735d8aa7fSBarry Smith B->bops->publish = MatPublish_Base; 88273d9f13SBarry Smith *A = B; 89273d9f13SBarry Smith PetscFunctionReturn(0); 90273d9f13SBarry Smith } 91273d9f13SBarry Smith 924a2ae208SSatish Balay #undef __FUNCT__ 93f69a0ea3SMatthew Knepley #define __FUNCT__ "MatSetSizes" 94f69a0ea3SMatthew Knepley /*@ 95f69a0ea3SMatthew Knepley MatSetSizes - Sets the local and global sizes, and checks to determine compatibility 96f69a0ea3SMatthew Knepley 97f69a0ea3SMatthew Knepley Collective on Mat 98f69a0ea3SMatthew Knepley 99f69a0ea3SMatthew Knepley Input Parameters: 100f69a0ea3SMatthew Knepley + A - the matrix 101f69a0ea3SMatthew Knepley . m - number of local rows (or PETSC_DECIDE) 102f69a0ea3SMatthew Knepley . n - number of local columns (or PETSC_DECIDE) 103f69a0ea3SMatthew Knepley . M - number of global rows (or PETSC_DETERMINE) 104f69a0ea3SMatthew Knepley - N - number of global columns (or PETSC_DETERMINE) 105f69a0ea3SMatthew Knepley 106f69a0ea3SMatthew Knepley Notes: 107f69a0ea3SMatthew Knepley m (n) and M (N) cannot be both PETSC_DECIDE 108f69a0ea3SMatthew Knepley If one processor calls this with M (N) of PETSC_DECIDE then all processors must, otherwise the program will hang. 109f69a0ea3SMatthew Knepley 110f69a0ea3SMatthew Knepley If PETSC_DECIDE is not used for the arguments 'm' and 'n', then the 111f69a0ea3SMatthew Knepley user must ensure that they are chosen to be compatible with the 112f69a0ea3SMatthew Knepley vectors. To do this, one first considers the matrix-vector product 113f69a0ea3SMatthew Knepley 'y = A x'. The 'm' that is used in the above routine must match the 114f69a0ea3SMatthew Knepley local size used in the vector creation routine VecCreateMPI() for 'y'. 115f69a0ea3SMatthew Knepley Likewise, the 'n' used must match that used as the local size in 116f69a0ea3SMatthew Knepley VecCreateMPI() for 'x'. 117f69a0ea3SMatthew Knepley 118f69a0ea3SMatthew Knepley Level: beginner 119f69a0ea3SMatthew Knepley 120f69a0ea3SMatthew Knepley .seealso: MatGetSize(), PetscSplitOwnership() 121f69a0ea3SMatthew Knepley @*/ 122f69a0ea3SMatthew Knepley PetscErrorCode PETSCMAT_DLLEXPORT MatSetSizes(Mat A, PetscInt m, PetscInt n, PetscInt M, PetscInt N) 123f69a0ea3SMatthew Knepley { 124284134d9SBarry Smith PetscErrorCode ierr; 125284134d9SBarry Smith 126f69a0ea3SMatthew Knepley PetscFunctionBegin; 127f69a0ea3SMatthew Knepley PetscValidHeaderSpecific(A,MAT_COOKIE,1); 128f69a0ea3SMatthew Knepley if (M > 0 && m > M) SETERRQ2(PETSC_ERR_ARG_INCOMP,"Local column size %D cannot be larger than global column size %D",m,M); 129f69a0ea3SMatthew Knepley if (N > 0 && n > N) SETERRQ2(PETSC_ERR_ARG_INCOMP,"Local row size %D cannot be larger than global row size %D",n,N); 130284134d9SBarry Smith if (A->ops->setsizes) { 131284134d9SBarry Smith /* Since this will not be set until the type has been set, this will NOT be called on the initial 132284134d9SBarry Smith call of MatSetSizes() (which must be called BEFORE MatSetType() */ 133284134d9SBarry Smith ierr = (*A->ops->setsizes)(A,m,n,M,N);CHKERRQ(ierr); 134284134d9SBarry Smith } else { 135899cda47SBarry Smith if ((A->rmap.n >= 0 || A->rmap.N >= 0) && (A->rmap.n != m || A->rmap.N != M)) SETERRQ4(PETSC_ERR_SUP,"Cannot change/reset row sizes to %D local %D global after previously setting them to %D local %D global",m,M,A->rmap.n,A->rmap.N); 136899cda47SBarry Smith if ((A->cmap.n >= 0 || A->cmap.N >= 0) && (A->cmap.n != n || A->cmap.N != N)) SETERRQ4(PETSC_ERR_SUP,"Cannot change/reset column sizes to %D local %D global after previously setting them to %D local %D global",n,N,A->cmap.n,A->cmap.N); 137284134d9SBarry Smith } 138899cda47SBarry Smith A->rmap.n = m; 139899cda47SBarry Smith A->cmap.n = n; 140899cda47SBarry Smith A->rmap.N = M; 141899cda47SBarry Smith A->cmap.N = N; 142f69a0ea3SMatthew Knepley PetscFunctionReturn(0); 143f69a0ea3SMatthew Knepley } 144f69a0ea3SMatthew Knepley 145f69a0ea3SMatthew Knepley #undef __FUNCT__ 1464a2ae208SSatish Balay #define __FUNCT__ "MatSetFromOptions" 14705869f15SSatish Balay /*@ 148273d9f13SBarry Smith MatSetFromOptions - Creates a matrix where the type is determined 149273d9f13SBarry Smith from the options database. Generates a parallel MPI matrix if the 150273d9f13SBarry Smith communicator has more than one processor. The default matrix type is 1517e5f4302SBarry Smith AIJ, using the routines MatCreateSeqAIJ() and MatCreateMPIAIJ() if 1527e5f4302SBarry Smith you do not select a type in the options database. 153273d9f13SBarry Smith 154273d9f13SBarry Smith Collective on Mat 155273d9f13SBarry Smith 156273d9f13SBarry Smith Input Parameter: 157273d9f13SBarry Smith . A - the matrix 158273d9f13SBarry Smith 159273d9f13SBarry Smith Options Database Keys: 160273d9f13SBarry Smith + -mat_type seqaij - AIJ type, uses MatCreateSeqAIJ() 161273d9f13SBarry Smith . -mat_type mpiaij - AIJ type, uses MatCreateMPIAIJ() 162273d9f13SBarry Smith . -mat_type seqbdiag - block diagonal type, uses MatCreateSeqBDiag() 163273d9f13SBarry Smith . -mat_type mpibdiag - block diagonal type, uses MatCreateMPIBDiag() 164273d9f13SBarry Smith . -mat_type mpirowbs - rowbs type, uses MatCreateMPIRowbs() 165273d9f13SBarry Smith . -mat_type seqdense - dense type, uses MatCreateSeqDense() 166273d9f13SBarry Smith . -mat_type mpidense - dense type, uses MatCreateMPIDense() 167273d9f13SBarry Smith . -mat_type seqbaij - block AIJ type, uses MatCreateSeqBAIJ() 168273d9f13SBarry Smith - -mat_type mpibaij - block AIJ type, uses MatCreateMPIBAIJ() 169273d9f13SBarry Smith 170273d9f13SBarry Smith Even More Options Database Keys: 171273d9f13SBarry Smith See the manpages for particular formats (e.g., MatCreateSeqAIJ()) 172273d9f13SBarry Smith for additional format-specific options. 173bd9ce289SLois Curfman McInnes 1741d69843bSLois Curfman McInnes Level: beginner 1751d69843bSLois Curfman McInnes 176dc401e71SLois Curfman McInnes .keywords: matrix, create 177e0b365e2SLois Curfman McInnes 178fafbff53SBarry Smith .seealso: MatCreateSeqAIJ((), MatCreateMPIAIJ(), 179fafbff53SBarry Smith MatCreateSeqBDiag(),MatCreateMPIBDiag(), 18039ddd567SLois Curfman McInnes MatCreateSeqDense(), MatCreateMPIDense(), 181a209d233SLois Curfman McInnes MatCreateMPIRowbs(), MatCreateSeqBAIJ(), MatCreateMPIBAIJ(), 182a209d233SLois Curfman McInnes MatCreateSeqSBAIJ(), MatCreateMPISBAIJ(), 183273d9f13SBarry Smith MatConvert() 1847807a1faSBarry Smith @*/ 185be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetFromOptions(Mat B) 1867807a1faSBarry Smith { 187dfbe8321SBarry Smith PetscErrorCode ierr; 188273d9f13SBarry Smith char mtype[256]; 189273d9f13SBarry Smith PetscTruth flg; 190dbb450caSBarry Smith 1913a40ed3dSBarry Smith PetscFunctionBegin; 192b0a32e0cSBarry Smith ierr = PetscOptionsGetString(B->prefix,"-mat_type",mtype,256,&flg);CHKERRQ(ierr); 193273d9f13SBarry Smith if (flg) { 194273d9f13SBarry Smith ierr = MatSetType(B,mtype);CHKERRQ(ierr); 195273d9f13SBarry Smith } 196*593c1905SSatish Balay if (!B->type_name) { 197*593c1905SSatish Balay ierr = MatSetType(B,MATAIJ);CHKERRQ(ierr); 198*593c1905SSatish Balay } 1993a40ed3dSBarry Smith PetscFunctionReturn(0); 2007807a1faSBarry Smith } 2017807a1faSBarry Smith 2024a2ae208SSatish Balay #undef __FUNCT__ 2034a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation" 204273d9f13SBarry Smith /*@C 205273d9f13SBarry Smith MatSetUpPreallocation 206dae03382SLois Curfman McInnes 207273d9f13SBarry Smith Collective on Mat 208dae03382SLois Curfman McInnes 209273d9f13SBarry Smith Input Parameter: 210273d9f13SBarry Smith . A - the matrix 211d5d45c9bSBarry Smith 212273d9f13SBarry Smith Level: beginner 213d5d45c9bSBarry Smith 214273d9f13SBarry Smith .keywords: matrix, create 215273d9f13SBarry Smith 216273d9f13SBarry Smith .seealso: MatCreateSeqAIJ((), MatCreateMPIAIJ(), 217273d9f13SBarry Smith MatCreateSeqBDiag(),MatCreateMPIBDiag(), 218273d9f13SBarry Smith MatCreateSeqDense(), MatCreateMPIDense(), 219273d9f13SBarry Smith MatCreateMPIRowbs(), MatCreateSeqBAIJ(), MatCreateMPIBAIJ(), 220273d9f13SBarry Smith MatCreateSeqSBAIJ(), MatCreateMPISBAIJ(), 221273d9f13SBarry Smith MatConvert() 222273d9f13SBarry Smith @*/ 223be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetUpPreallocation(Mat B) 224273d9f13SBarry Smith { 225dfbe8321SBarry Smith PetscErrorCode ierr; 226273d9f13SBarry Smith 227273d9f13SBarry Smith PetscFunctionBegin; 22817667f90SBarry Smith if (!B->preallocated && B->ops->setuppreallocation) { 229ae15b995SBarry Smith ierr = PetscInfo(B,"Warning not preallocating matrix storage\n");CHKERRQ(ierr); 230273d9f13SBarry Smith ierr = (*B->ops->setuppreallocation)(B);CHKERRQ(ierr); 231273d9f13SBarry Smith } 232210f0121SBarry Smith B->preallocated = PETSC_TRUE; 233273d9f13SBarry Smith PetscFunctionReturn(0); 234273d9f13SBarry Smith } 235273d9f13SBarry Smith 236273d9f13SBarry Smith /* 237273d9f13SBarry Smith Copies from Cs header to A 238273d9f13SBarry Smith */ 2394a2ae208SSatish Balay #undef __FUNCT__ 2404a2ae208SSatish Balay #define __FUNCT__ "MatHeaderCopy" 241dfbe8321SBarry Smith PetscErrorCode MatHeaderCopy(Mat A,Mat C) 242273d9f13SBarry Smith { 243dfbe8321SBarry Smith PetscErrorCode ierr; 244d44834fbSBarry Smith PetscInt refct; 245273d9f13SBarry Smith PetscOps *Abops; 246273d9f13SBarry Smith MatOps Aops; 247273d9f13SBarry Smith char *mtype,*mname; 24830735b05SKris Buschelman void *spptr; 249273d9f13SBarry Smith 250273d9f13SBarry Smith PetscFunctionBegin; 251273d9f13SBarry Smith /* free all the interior data structures from mat */ 252273d9f13SBarry Smith ierr = (*A->ops->destroy)(A);CHKERRQ(ierr); 253273d9f13SBarry Smith 254273d9f13SBarry Smith /* save the parts of A we need */ 255273d9f13SBarry Smith Abops = A->bops; 256273d9f13SBarry Smith Aops = A->ops; 257273d9f13SBarry Smith refct = A->refct; 258273d9f13SBarry Smith mtype = A->type_name; 259273d9f13SBarry Smith mname = A->name; 26030735b05SKris Buschelman spptr = A->spptr; 26130735b05SKris Buschelman 26230735b05SKris Buschelman ierr = PetscFree(C->spptr);CHKERRQ(ierr); 26305b42c5fSBarry Smith 264357abbc8SBarry Smith ierr = PetscFree(A->rmap.range);CHKERRQ(ierr); 265357abbc8SBarry Smith ierr = PetscFree(A->cmap.range);CHKERRQ(ierr); 266273d9f13SBarry Smith 267273d9f13SBarry Smith /* copy C over to A */ 268273d9f13SBarry Smith ierr = PetscMemcpy(A,C,sizeof(struct _p_Mat));CHKERRQ(ierr); 269273d9f13SBarry Smith 270273d9f13SBarry Smith /* return the parts of A we saved */ 271273d9f13SBarry Smith A->bops = Abops; 272273d9f13SBarry Smith A->ops = Aops; 273273d9f13SBarry Smith A->qlist = 0; 274273d9f13SBarry Smith A->refct = refct; 275273d9f13SBarry Smith A->type_name = mtype; 276273d9f13SBarry Smith A->name = mname; 27730735b05SKris Buschelman A->spptr = spptr; 278273d9f13SBarry Smith 279d38fa0fbSBarry Smith ierr = PetscHeaderDestroy(C);CHKERRQ(ierr); 280273d9f13SBarry Smith PetscFunctionReturn(0); 281273d9f13SBarry Smith } 2828ab5b326SKris Buschelman /* 2838ab5b326SKris Buschelman Replace A's header with that of C 2848ab5b326SKris Buschelman This is essentially code moved from MatDestroy 2858ab5b326SKris Buschelman */ 2868ab5b326SKris Buschelman #undef __FUNCT__ 2878ab5b326SKris Buschelman #define __FUNCT__ "MatHeaderReplace" 2888ab5b326SKris Buschelman PetscErrorCode MatHeaderReplace(Mat A,Mat C) 2898ab5b326SKris Buschelman { 2908ab5b326SKris Buschelman PetscErrorCode ierr; 2918ab5b326SKris Buschelman 2928ab5b326SKris Buschelman PetscFunctionBegin; 2938ab5b326SKris Buschelman /* free all the interior data structures from mat */ 2948ab5b326SKris Buschelman ierr = (*A->ops->destroy)(A);CHKERRQ(ierr); 295d2c95936SBarry Smith ierr = PetscHeaderDestroy_Private((PetscObject)A);CHKERRQ(ierr); 296357abbc8SBarry Smith ierr = PetscFree(A->rmap.range);CHKERRQ(ierr); 297357abbc8SBarry Smith ierr = PetscFree(A->cmap.range);CHKERRQ(ierr); 298d95db058SSatish Balay ierr = PetscFree(A->spptr);CHKERRQ(ierr); 2998ab5b326SKris Buschelman 3008ab5b326SKris Buschelman /* copy C over to A */ 3018ab5b326SKris Buschelman if (C) { 3028ab5b326SKris Buschelman ierr = PetscMemcpy(A,C,sizeof(struct _p_Mat));CHKERRQ(ierr); 3038ab5b326SKris Buschelman ierr = PetscLogObjectDestroy((PetscObject)C);CHKERRQ(ierr); 3048ab5b326SKris Buschelman ierr = PetscFree(C);CHKERRQ(ierr); 3058ab5b326SKris Buschelman } 3068ab5b326SKris Buschelman PetscFunctionReturn(0); 3078ab5b326SKris Buschelman } 308