1be1d678aSKris Buschelman #define PETSCMAT_DLL 27807a1faSBarry Smith 3b9147fbbSdalcinl #include "include/private/matimpl.h" /*I "petscmat.h" I*/ 4325e03aeSBarry Smith #include "petscsys.h" 57807a1faSBarry Smith 67adad957SLisandro Dalcin #if 0 74a2ae208SSatish Balay #undef __FUNCT__ 84a2ae208SSatish Balay #define __FUNCT__ "MatPublish_Base" 96849ba73SBarry Smith static PetscErrorCode MatPublish_Base(PetscObject obj) 1035d8aa7fSBarry Smith { 1135d8aa7fSBarry Smith PetscFunctionBegin; 1235d8aa7fSBarry Smith PetscFunctionReturn(0); 1335d8aa7fSBarry Smith } 147adad957SLisandro Dalcin #endif 1535d8aa7fSBarry Smith 164a2ae208SSatish Balay #undef __FUNCT__ 174a2ae208SSatish Balay #define __FUNCT__ "MatCreate" 1805869f15SSatish Balay /*@ 1969dd0797SLois Curfman McInnes MatCreate - Creates a matrix where the type is determined 207e5f4302SBarry Smith from either a call to MatSetType() or from the options database 217e5f4302SBarry Smith with a call to MatSetFromOptions(). The default matrix type is 227e5f4302SBarry Smith AIJ, using the routines MatCreateSeqAIJ() or MatCreateMPIAIJ() 237e5f4302SBarry Smith if you do not set a type in the options database. If you never 247e5f4302SBarry Smith call MatSetType() or MatSetFromOptions() it will generate an 25f8ab6608SSatish Balay error when you try to use the matrix. 2683e1b59cSLois Curfman McInnes 27cb13003dSBarry Smith Collective on MPI_Comm 28cb13003dSBarry Smith 29f69a0ea3SMatthew Knepley Input Parameter: 30f69a0ea3SMatthew Knepley . comm - MPI communicator 317807a1faSBarry Smith 327807a1faSBarry Smith Output Parameter: 33dc401e71SLois Curfman McInnes . A - the matrix 34e0b365e2SLois Curfman McInnes 35273d9f13SBarry Smith Options Database Keys: 36273d9f13SBarry Smith + -mat_type seqaij - AIJ type, uses MatCreateSeqAIJ() 37273d9f13SBarry Smith . -mat_type mpiaij - AIJ type, uses MatCreateMPIAIJ() 38273d9f13SBarry Smith . -mat_type mpirowbs - rowbs type, uses MatCreateMPIRowbs() 39273d9f13SBarry Smith . -mat_type seqdense - dense type, uses MatCreateSeqDense() 40273d9f13SBarry Smith . -mat_type mpidense - dense type, uses MatCreateMPIDense() 41273d9f13SBarry Smith . -mat_type seqbaij - block AIJ type, uses MatCreateSeqBAIJ() 42273d9f13SBarry Smith - -mat_type mpibaij - block AIJ type, uses MatCreateMPIBAIJ() 43e0b365e2SLois Curfman McInnes 4483e1b59cSLois Curfman McInnes Even More Options Database Keys: 4583e1b59cSLois Curfman McInnes See the manpages for particular formats (e.g., MatCreateSeqAIJ()) 4683e1b59cSLois Curfman McInnes for additional format-specific options. 47e0b365e2SLois Curfman McInnes 48bd9ce289SLois Curfman McInnes Notes: 49ec6e0d80SSatish Balay 50273d9f13SBarry Smith Level: beginner 51273d9f13SBarry Smith 52a2fc510eSBarry Smith User manual sections: 53a2fc510eSBarry Smith + sec_matcreate 54a2fc510eSBarry Smith - chapter_matrices 55a2fc510eSBarry Smith 56273d9f13SBarry Smith .keywords: matrix, create 57273d9f13SBarry Smith 58cd05a4c0SHong Zhang .seealso: MatCreateSeqAIJ(), MatCreateMPIAIJ(), 59273d9f13SBarry Smith MatCreateSeqDense(), MatCreateMPIDense(), 60273d9f13SBarry Smith MatCreateMPIRowbs(), MatCreateSeqBAIJ(), MatCreateMPIBAIJ(), 61273d9f13SBarry Smith MatCreateSeqSBAIJ(), MatCreateMPISBAIJ(), 62273d9f13SBarry Smith MatConvert() 63273d9f13SBarry Smith @*/ 64f69a0ea3SMatthew Knepley PetscErrorCode PETSCMAT_DLLEXPORT MatCreate(MPI_Comm comm,Mat *A) 65273d9f13SBarry Smith { 66273d9f13SBarry Smith Mat B; 67dfbe8321SBarry Smith PetscErrorCode ierr; 68273d9f13SBarry Smith 69273d9f13SBarry Smith PetscFunctionBegin; 70f69a0ea3SMatthew Knepley PetscValidPointer(A,2); 7197f1f81fSBarry Smith 728ba1e511SMatthew Knepley *A = PETSC_NULL; 738ba1e511SMatthew Knepley #ifndef PETSC_USE_DYNAMIC_LIBRARIES 748ba1e511SMatthew Knepley ierr = MatInitializePackage(PETSC_NULL);CHKERRQ(ierr); 758ba1e511SMatthew Knepley #endif 768ba1e511SMatthew Knepley 7752e6d16bSBarry Smith ierr = PetscHeaderCreate(B,_p_Mat,struct _MatOps,MAT_COOKIE,0,"Mat",comm,MatDestroy,MatView);CHKERRQ(ierr); 786148ca0dSBarry Smith ierr = PetscMapInitialize(comm,&B->rmap);CHKERRQ(ierr); 796148ca0dSBarry Smith ierr = PetscMapInitialize(comm,&B->cmap);CHKERRQ(ierr); 80273d9f13SBarry Smith B->preallocated = PETSC_FALSE; 81273d9f13SBarry Smith *A = B; 82273d9f13SBarry Smith PetscFunctionReturn(0); 83273d9f13SBarry Smith } 84273d9f13SBarry Smith 854a2ae208SSatish Balay #undef __FUNCT__ 86f69a0ea3SMatthew Knepley #define __FUNCT__ "MatSetSizes" 87f69a0ea3SMatthew Knepley /*@ 88f69a0ea3SMatthew Knepley MatSetSizes - Sets the local and global sizes, and checks to determine compatibility 89f69a0ea3SMatthew Knepley 90f69a0ea3SMatthew Knepley Collective on Mat 91f69a0ea3SMatthew Knepley 92f69a0ea3SMatthew Knepley Input Parameters: 93f69a0ea3SMatthew Knepley + A - the matrix 94f69a0ea3SMatthew Knepley . m - number of local rows (or PETSC_DECIDE) 95f69a0ea3SMatthew Knepley . n - number of local columns (or PETSC_DECIDE) 96f69a0ea3SMatthew Knepley . M - number of global rows (or PETSC_DETERMINE) 97f69a0ea3SMatthew Knepley - N - number of global columns (or PETSC_DETERMINE) 98f69a0ea3SMatthew Knepley 99f69a0ea3SMatthew Knepley Notes: 100f69a0ea3SMatthew Knepley m (n) and M (N) cannot be both PETSC_DECIDE 101f69a0ea3SMatthew Knepley If one processor calls this with M (N) of PETSC_DECIDE then all processors must, otherwise the program will hang. 102f69a0ea3SMatthew Knepley 103f69a0ea3SMatthew Knepley If PETSC_DECIDE is not used for the arguments 'm' and 'n', then the 104f69a0ea3SMatthew Knepley user must ensure that they are chosen to be compatible with the 105f69a0ea3SMatthew Knepley vectors. To do this, one first considers the matrix-vector product 106f69a0ea3SMatthew Knepley 'y = A x'. The 'm' that is used in the above routine must match the 107f69a0ea3SMatthew Knepley local size used in the vector creation routine VecCreateMPI() for 'y'. 108f69a0ea3SMatthew Knepley Likewise, the 'n' used must match that used as the local size in 109f69a0ea3SMatthew Knepley VecCreateMPI() for 'x'. 110f69a0ea3SMatthew Knepley 111f69a0ea3SMatthew Knepley Level: beginner 112f69a0ea3SMatthew Knepley 113f69a0ea3SMatthew Knepley .seealso: MatGetSize(), PetscSplitOwnership() 114f69a0ea3SMatthew Knepley @*/ 115f69a0ea3SMatthew Knepley PetscErrorCode PETSCMAT_DLLEXPORT MatSetSizes(Mat A, PetscInt m, PetscInt n, PetscInt M, PetscInt N) 116f69a0ea3SMatthew Knepley { 117284134d9SBarry Smith PetscErrorCode ierr; 118284134d9SBarry Smith 119f69a0ea3SMatthew Knepley PetscFunctionBegin; 120f69a0ea3SMatthew Knepley PetscValidHeaderSpecific(A,MAT_COOKIE,1); 121f69a0ea3SMatthew Knepley if (M > 0 && m > M) SETERRQ2(PETSC_ERR_ARG_INCOMP,"Local column size %D cannot be larger than global column size %D",m,M); 122f69a0ea3SMatthew Knepley if (N > 0 && n > N) SETERRQ2(PETSC_ERR_ARG_INCOMP,"Local row size %D cannot be larger than global row size %D",n,N); 123284134d9SBarry Smith if (A->ops->setsizes) { 124284134d9SBarry Smith /* Since this will not be set until the type has been set, this will NOT be called on the initial 125284134d9SBarry Smith call of MatSetSizes() (which must be called BEFORE MatSetType() */ 126284134d9SBarry Smith ierr = (*A->ops->setsizes)(A,m,n,M,N);CHKERRQ(ierr); 127284134d9SBarry Smith } else { 128899cda47SBarry Smith if ((A->rmap.n >= 0 || A->rmap.N >= 0) && (A->rmap.n != m || A->rmap.N != M)) SETERRQ4(PETSC_ERR_SUP,"Cannot change/reset row sizes to %D local %D global after previously setting them to %D local %D global",m,M,A->rmap.n,A->rmap.N); 129899cda47SBarry Smith if ((A->cmap.n >= 0 || A->cmap.N >= 0) && (A->cmap.n != n || A->cmap.N != N)) SETERRQ4(PETSC_ERR_SUP,"Cannot change/reset column sizes to %D local %D global after previously setting them to %D local %D global",n,N,A->cmap.n,A->cmap.N); 130284134d9SBarry Smith } 131899cda47SBarry Smith A->rmap.n = m; 132899cda47SBarry Smith A->cmap.n = n; 133899cda47SBarry Smith A->rmap.N = M; 134899cda47SBarry Smith A->cmap.N = N; 135f69a0ea3SMatthew Knepley PetscFunctionReturn(0); 136f69a0ea3SMatthew Knepley } 137f69a0ea3SMatthew Knepley 138f69a0ea3SMatthew Knepley #undef __FUNCT__ 1394a2ae208SSatish Balay #define __FUNCT__ "MatSetFromOptions" 14005869f15SSatish Balay /*@ 141273d9f13SBarry Smith MatSetFromOptions - Creates a matrix where the type is determined 142273d9f13SBarry Smith from the options database. Generates a parallel MPI matrix if the 143273d9f13SBarry Smith communicator has more than one processor. The default matrix type is 1447e5f4302SBarry Smith AIJ, using the routines MatCreateSeqAIJ() and MatCreateMPIAIJ() if 1457e5f4302SBarry Smith you do not select a type in the options database. 146273d9f13SBarry Smith 147273d9f13SBarry Smith Collective on Mat 148273d9f13SBarry Smith 149273d9f13SBarry Smith Input Parameter: 150273d9f13SBarry Smith . A - the matrix 151273d9f13SBarry Smith 152273d9f13SBarry Smith Options Database Keys: 153273d9f13SBarry Smith + -mat_type seqaij - AIJ type, uses MatCreateSeqAIJ() 154273d9f13SBarry Smith . -mat_type mpiaij - AIJ type, uses MatCreateMPIAIJ() 155273d9f13SBarry Smith . -mat_type mpirowbs - rowbs type, uses MatCreateMPIRowbs() 156273d9f13SBarry Smith . -mat_type seqdense - dense type, uses MatCreateSeqDense() 157273d9f13SBarry Smith . -mat_type mpidense - dense type, uses MatCreateMPIDense() 158273d9f13SBarry Smith . -mat_type seqbaij - block AIJ type, uses MatCreateSeqBAIJ() 159273d9f13SBarry Smith - -mat_type mpibaij - block AIJ type, uses MatCreateMPIBAIJ() 160273d9f13SBarry Smith 161273d9f13SBarry Smith Even More Options Database Keys: 162273d9f13SBarry Smith See the manpages for particular formats (e.g., MatCreateSeqAIJ()) 163273d9f13SBarry Smith for additional format-specific options. 164bd9ce289SLois Curfman McInnes 1651d69843bSLois Curfman McInnes Level: beginner 1661d69843bSLois Curfman McInnes 167dc401e71SLois Curfman McInnes .keywords: matrix, create 168e0b365e2SLois Curfman McInnes 169fafbff53SBarry Smith .seealso: MatCreateSeqAIJ((), MatCreateMPIAIJ(), 17039ddd567SLois Curfman McInnes MatCreateSeqDense(), MatCreateMPIDense(), 171a209d233SLois Curfman McInnes MatCreateMPIRowbs(), MatCreateSeqBAIJ(), MatCreateMPIBAIJ(), 172a209d233SLois Curfman McInnes MatCreateSeqSBAIJ(), MatCreateMPISBAIJ(), 173273d9f13SBarry Smith MatConvert() 1747807a1faSBarry Smith @*/ 175be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetFromOptions(Mat B) 1767807a1faSBarry Smith { 177dfbe8321SBarry Smith PetscErrorCode ierr; 178f3be49caSLisandro Dalcin const char *deft = MATAIJ; 179f3be49caSLisandro Dalcin char type[256]; 180273d9f13SBarry Smith PetscTruth flg; 181dbb450caSBarry Smith 1823a40ed3dSBarry Smith PetscFunctionBegin; 183f3be49caSLisandro Dalcin PetscValidHeaderSpecific(B,MAT_COOKIE,1); 184f3be49caSLisandro Dalcin 185f3be49caSLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Matrix options","Mat");CHKERRQ(ierr); 186f3be49caSLisandro Dalcin ierr = PetscOptionsList("-mat_type","Matrix type","MatSetType",MatList,deft,type,256,&flg);CHKERRQ(ierr); 187273d9f13SBarry Smith if (flg) { 188f3be49caSLisandro Dalcin ierr = MatSetType(B,type);CHKERRQ(ierr); 189f3be49caSLisandro Dalcin } else if (!((PetscObject)B)->type_name) { 190f3be49caSLisandro Dalcin ierr = MatSetType(B,deft);CHKERRQ(ierr); 191273d9f13SBarry Smith } 192f3be49caSLisandro Dalcin 193f3be49caSLisandro Dalcin if (B->ops->setfromoptions) { 194f3be49caSLisandro Dalcin ierr = (*B->ops->setfromoptions)(B);CHKERRQ(ierr); 195593c1905SSatish Balay } 196f3be49caSLisandro Dalcin 197f3be49caSLisandro Dalcin ierr = PetscOptionsEnd();CHKERRQ(ierr); 198f3be49caSLisandro Dalcin 1993a40ed3dSBarry Smith PetscFunctionReturn(0); 2007807a1faSBarry Smith } 2017807a1faSBarry Smith 2024a2ae208SSatish Balay #undef __FUNCT__ 2034a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation" 204bc08b0f1SBarry Smith /*@ 205273d9f13SBarry Smith MatSetUpPreallocation 206dae03382SLois Curfman McInnes 207273d9f13SBarry Smith Collective on Mat 208dae03382SLois Curfman McInnes 209273d9f13SBarry Smith Input Parameter: 210273d9f13SBarry Smith . A - the matrix 211d5d45c9bSBarry Smith 212273d9f13SBarry Smith Level: beginner 213d5d45c9bSBarry Smith 214273d9f13SBarry Smith .keywords: matrix, create 215273d9f13SBarry Smith 216273d9f13SBarry Smith .seealso: MatCreateSeqAIJ((), MatCreateMPIAIJ(), 217273d9f13SBarry Smith MatCreateSeqDense(), MatCreateMPIDense(), 218273d9f13SBarry Smith MatCreateMPIRowbs(), MatCreateSeqBAIJ(), MatCreateMPIBAIJ(), 219273d9f13SBarry Smith MatCreateSeqSBAIJ(), MatCreateMPISBAIJ(), 220273d9f13SBarry Smith MatConvert() 221273d9f13SBarry Smith @*/ 222be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetUpPreallocation(Mat B) 223273d9f13SBarry Smith { 224dfbe8321SBarry Smith PetscErrorCode ierr; 225273d9f13SBarry Smith 226273d9f13SBarry Smith PetscFunctionBegin; 22717667f90SBarry Smith if (!B->preallocated && B->ops->setuppreallocation) { 228ae15b995SBarry Smith ierr = PetscInfo(B,"Warning not preallocating matrix storage\n");CHKERRQ(ierr); 229273d9f13SBarry Smith ierr = (*B->ops->setuppreallocation)(B);CHKERRQ(ierr); 230273d9f13SBarry Smith } 231210f0121SBarry Smith B->preallocated = PETSC_TRUE; 232273d9f13SBarry Smith PetscFunctionReturn(0); 233273d9f13SBarry Smith } 234273d9f13SBarry Smith 235273d9f13SBarry Smith /* 236273d9f13SBarry Smith Copies from Cs header to A 237273d9f13SBarry Smith */ 2384a2ae208SSatish Balay #undef __FUNCT__ 2394a2ae208SSatish Balay #define __FUNCT__ "MatHeaderCopy" 240dfbe8321SBarry Smith PetscErrorCode MatHeaderCopy(Mat A,Mat C) 241273d9f13SBarry Smith { 242dfbe8321SBarry Smith PetscErrorCode ierr; 243d44834fbSBarry Smith PetscInt refct; 244273d9f13SBarry Smith PetscOps *Abops; 245273d9f13SBarry Smith MatOps Aops; 246273d9f13SBarry Smith char *mtype,*mname; 24730735b05SKris Buschelman void *spptr; 248273d9f13SBarry Smith 249273d9f13SBarry Smith PetscFunctionBegin; 250273d9f13SBarry Smith /* save the parts of A we need */ 2517adad957SLisandro Dalcin Abops = ((PetscObject)A)->bops; 252273d9f13SBarry Smith Aops = A->ops; 2537adad957SLisandro Dalcin refct = ((PetscObject)A)->refct; 254*5c9eb25fSBarry Smith mtype = ((PetscObject)A)->type_name; 255*5c9eb25fSBarry Smith mname = ((PetscObject)A)->name; 25630735b05SKris Buschelman spptr = A->spptr; 25730735b05SKris Buschelman 258*5c9eb25fSBarry Smith /* zero these so the destroy below does not free them */ 259*5c9eb25fSBarry Smith ((PetscObject)A)->type_name = 0; 260*5c9eb25fSBarry Smith ((PetscObject)A)->name = 0; 261*5c9eb25fSBarry Smith 2627c99f97cSSatish Balay /* free all the interior data structures from mat */ 2637c99f97cSSatish Balay ierr = (*A->ops->destroy)(A);CHKERRQ(ierr); 2647c99f97cSSatish Balay 26530735b05SKris Buschelman ierr = PetscFree(C->spptr);CHKERRQ(ierr); 26605b42c5fSBarry Smith 267357abbc8SBarry Smith ierr = PetscFree(A->rmap.range);CHKERRQ(ierr); 268357abbc8SBarry Smith ierr = PetscFree(A->cmap.range);CHKERRQ(ierr); 269*5c9eb25fSBarry Smith ierr = PetscFListDestroy(&((PetscObject)A)->qlist);CHKERRQ(ierr); 270*5c9eb25fSBarry Smith ierr = PetscOListDestroy(((PetscObject)A)->olist);CHKERRQ(ierr); 271273d9f13SBarry Smith 272273d9f13SBarry Smith /* copy C over to A */ 273273d9f13SBarry Smith ierr = PetscMemcpy(A,C,sizeof(struct _p_Mat));CHKERRQ(ierr); 274273d9f13SBarry Smith 275273d9f13SBarry Smith /* return the parts of A we saved */ 2767adad957SLisandro Dalcin ((PetscObject)A)->bops = Abops; 277273d9f13SBarry Smith A->ops = Aops; 2787adad957SLisandro Dalcin ((PetscObject)A)->refct = refct; 2797adad957SLisandro Dalcin ((PetscObject)A)->type_name = mtype; 2807adad957SLisandro Dalcin ((PetscObject)A)->name = mname; 28130735b05SKris Buschelman A->spptr = spptr; 282273d9f13SBarry Smith 283*5c9eb25fSBarry Smith /* since these two are copied into A we do not want them destroyed in C */ 284*5c9eb25fSBarry Smith ((PetscObject)C)->qlist = 0; 285*5c9eb25fSBarry Smith ((PetscObject)C)->olist = 0; 286d38fa0fbSBarry Smith ierr = PetscHeaderDestroy(C);CHKERRQ(ierr); 287273d9f13SBarry Smith PetscFunctionReturn(0); 288273d9f13SBarry Smith } 2898ab5b326SKris Buschelman /* 2908ab5b326SKris Buschelman Replace A's header with that of C 2918ab5b326SKris Buschelman This is essentially code moved from MatDestroy 2928ab5b326SKris Buschelman */ 2938ab5b326SKris Buschelman #undef __FUNCT__ 2948ab5b326SKris Buschelman #define __FUNCT__ "MatHeaderReplace" 2958ab5b326SKris Buschelman PetscErrorCode MatHeaderReplace(Mat A,Mat C) 2968ab5b326SKris Buschelman { 2978ab5b326SKris Buschelman PetscErrorCode ierr; 2988ab5b326SKris Buschelman 2998ab5b326SKris Buschelman PetscFunctionBegin; 3008ab5b326SKris Buschelman /* free all the interior data structures from mat */ 3018ab5b326SKris Buschelman ierr = (*A->ops->destroy)(A);CHKERRQ(ierr); 302d2c95936SBarry Smith ierr = PetscHeaderDestroy_Private((PetscObject)A);CHKERRQ(ierr); 303c650bb5fSLisandro Dalcin ierr = PetscFree(A->ops);CHKERRQ(ierr); 304357abbc8SBarry Smith ierr = PetscFree(A->rmap.range);CHKERRQ(ierr); 305357abbc8SBarry Smith ierr = PetscFree(A->cmap.range);CHKERRQ(ierr); 306d95db058SSatish Balay ierr = PetscFree(A->spptr);CHKERRQ(ierr); 3078ab5b326SKris Buschelman 3088ab5b326SKris Buschelman /* copy C over to A */ 3098ab5b326SKris Buschelman if (C) { 3108ab5b326SKris Buschelman ierr = PetscMemcpy(A,C,sizeof(struct _p_Mat));CHKERRQ(ierr); 3118ab5b326SKris Buschelman ierr = PetscLogObjectDestroy((PetscObject)C);CHKERRQ(ierr); 3128ab5b326SKris Buschelman ierr = PetscFree(C);CHKERRQ(ierr); 3138ab5b326SKris Buschelman } 3148ab5b326SKris Buschelman PetscFunctionReturn(0); 3158ab5b326SKris Buschelman } 316