1be1d678aSKris Buschelman #define PETSCMAT_DLL 27807a1faSBarry Smith 37c4f633dSBarry Smith #include "private/matimpl.h" /*I "petscmat.h" I*/ 4325e03aeSBarry Smith #include "petscsys.h" 57807a1faSBarry Smith 67adad957SLisandro Dalcin #if 0 74a2ae208SSatish Balay #undef __FUNCT__ 84a2ae208SSatish Balay #define __FUNCT__ "MatPublish_Base" 96849ba73SBarry Smith static PetscErrorCode MatPublish_Base(PetscObject obj) 1035d8aa7fSBarry Smith { 1135d8aa7fSBarry Smith PetscFunctionBegin; 1235d8aa7fSBarry Smith PetscFunctionReturn(0); 1335d8aa7fSBarry Smith } 147adad957SLisandro Dalcin #endif 1535d8aa7fSBarry Smith 164a2ae208SSatish Balay #undef __FUNCT__ 174a2ae208SSatish Balay #define __FUNCT__ "MatCreate" 1805869f15SSatish Balay /*@ 1969dd0797SLois Curfman McInnes MatCreate - Creates a matrix where the type is determined 207e5f4302SBarry Smith from either a call to MatSetType() or from the options database 217e5f4302SBarry Smith with a call to MatSetFromOptions(). The default matrix type is 227e5f4302SBarry Smith AIJ, using the routines MatCreateSeqAIJ() or MatCreateMPIAIJ() 237e5f4302SBarry Smith if you do not set a type in the options database. If you never 247e5f4302SBarry Smith call MatSetType() or MatSetFromOptions() it will generate an 25f8ab6608SSatish Balay error when you try to use the matrix. 2683e1b59cSLois Curfman McInnes 27cb13003dSBarry Smith Collective on MPI_Comm 28cb13003dSBarry Smith 29f69a0ea3SMatthew Knepley Input Parameter: 30f69a0ea3SMatthew Knepley . comm - MPI communicator 317807a1faSBarry Smith 327807a1faSBarry Smith Output Parameter: 33dc401e71SLois Curfman McInnes . A - the matrix 34e0b365e2SLois Curfman McInnes 35273d9f13SBarry Smith Options Database Keys: 36273d9f13SBarry Smith + -mat_type seqaij - AIJ type, uses MatCreateSeqAIJ() 37273d9f13SBarry Smith . -mat_type mpiaij - AIJ type, uses MatCreateMPIAIJ() 38273d9f13SBarry Smith . -mat_type seqdense - dense type, uses MatCreateSeqDense() 39273d9f13SBarry Smith . -mat_type mpidense - dense type, uses MatCreateMPIDense() 40273d9f13SBarry Smith . -mat_type seqbaij - block AIJ type, uses MatCreateSeqBAIJ() 41273d9f13SBarry Smith - -mat_type mpibaij - block AIJ type, uses MatCreateMPIBAIJ() 42e0b365e2SLois Curfman McInnes 4383e1b59cSLois Curfman McInnes Even More Options Database Keys: 4483e1b59cSLois Curfman McInnes See the manpages for particular formats (e.g., MatCreateSeqAIJ()) 4583e1b59cSLois Curfman McInnes for additional format-specific options. 46e0b365e2SLois Curfman McInnes 47bd9ce289SLois Curfman McInnes Notes: 48ec6e0d80SSatish Balay 49273d9f13SBarry Smith Level: beginner 50273d9f13SBarry Smith 51a2fc510eSBarry Smith User manual sections: 52a2fc510eSBarry Smith + sec_matcreate 53a2fc510eSBarry Smith - chapter_matrices 54a2fc510eSBarry Smith 55273d9f13SBarry Smith .keywords: matrix, create 56273d9f13SBarry Smith 57cd05a4c0SHong Zhang .seealso: MatCreateSeqAIJ(), MatCreateMPIAIJ(), 58273d9f13SBarry Smith MatCreateSeqDense(), MatCreateMPIDense(), 59*6531c467SSatish Balay MatCreateSeqBAIJ(), MatCreateMPIBAIJ(), 60273d9f13SBarry Smith MatCreateSeqSBAIJ(), MatCreateMPISBAIJ(), 61273d9f13SBarry Smith MatConvert() 62273d9f13SBarry Smith @*/ 63f69a0ea3SMatthew Knepley PetscErrorCode PETSCMAT_DLLEXPORT MatCreate(MPI_Comm comm,Mat *A) 64273d9f13SBarry Smith { 65273d9f13SBarry Smith Mat B; 66dfbe8321SBarry Smith PetscErrorCode ierr; 67273d9f13SBarry Smith 68273d9f13SBarry Smith PetscFunctionBegin; 69f69a0ea3SMatthew Knepley PetscValidPointer(A,2); 7097f1f81fSBarry Smith 718ba1e511SMatthew Knepley *A = PETSC_NULL; 728ba1e511SMatthew Knepley #ifndef PETSC_USE_DYNAMIC_LIBRARIES 738ba1e511SMatthew Knepley ierr = MatInitializePackage(PETSC_NULL);CHKERRQ(ierr); 748ba1e511SMatthew Knepley #endif 758ba1e511SMatthew Knepley 7652e6d16bSBarry Smith ierr = PetscHeaderCreate(B,_p_Mat,struct _MatOps,MAT_COOKIE,0,"Mat",comm,MatDestroy,MatView);CHKERRQ(ierr); 7726283091SBarry Smith ierr = PetscLayoutCreate(comm,&B->rmap);CHKERRQ(ierr); 7826283091SBarry Smith ierr = PetscLayoutCreate(comm,&B->cmap);CHKERRQ(ierr); 79273d9f13SBarry Smith B->preallocated = PETSC_FALSE; 80273d9f13SBarry Smith *A = B; 81273d9f13SBarry Smith PetscFunctionReturn(0); 82273d9f13SBarry Smith } 83273d9f13SBarry Smith 844a2ae208SSatish Balay #undef __FUNCT__ 85f69a0ea3SMatthew Knepley #define __FUNCT__ "MatSetSizes" 86f69a0ea3SMatthew Knepley /*@ 87f69a0ea3SMatthew Knepley MatSetSizes - Sets the local and global sizes, and checks to determine compatibility 88f69a0ea3SMatthew Knepley 89f69a0ea3SMatthew Knepley Collective on Mat 90f69a0ea3SMatthew Knepley 91f69a0ea3SMatthew Knepley Input Parameters: 92f69a0ea3SMatthew Knepley + A - the matrix 93f69a0ea3SMatthew Knepley . m - number of local rows (or PETSC_DECIDE) 94f69a0ea3SMatthew Knepley . n - number of local columns (or PETSC_DECIDE) 95f69a0ea3SMatthew Knepley . M - number of global rows (or PETSC_DETERMINE) 96f69a0ea3SMatthew Knepley - N - number of global columns (or PETSC_DETERMINE) 97f69a0ea3SMatthew Knepley 98f69a0ea3SMatthew Knepley Notes: 99f69a0ea3SMatthew Knepley m (n) and M (N) cannot be both PETSC_DECIDE 100f69a0ea3SMatthew Knepley If one processor calls this with M (N) of PETSC_DECIDE then all processors must, otherwise the program will hang. 101f69a0ea3SMatthew Knepley 102f69a0ea3SMatthew Knepley If PETSC_DECIDE is not used for the arguments 'm' and 'n', then the 103f69a0ea3SMatthew Knepley user must ensure that they are chosen to be compatible with the 104f69a0ea3SMatthew Knepley vectors. To do this, one first considers the matrix-vector product 105f69a0ea3SMatthew Knepley 'y = A x'. The 'm' that is used in the above routine must match the 106f69a0ea3SMatthew Knepley local size used in the vector creation routine VecCreateMPI() for 'y'. 107f69a0ea3SMatthew Knepley Likewise, the 'n' used must match that used as the local size in 108f69a0ea3SMatthew Knepley VecCreateMPI() for 'x'. 109f69a0ea3SMatthew Knepley 110f69a0ea3SMatthew Knepley Level: beginner 111f69a0ea3SMatthew Knepley 112f69a0ea3SMatthew Knepley .seealso: MatGetSize(), PetscSplitOwnership() 113f69a0ea3SMatthew Knepley @*/ 114f69a0ea3SMatthew Knepley PetscErrorCode PETSCMAT_DLLEXPORT MatSetSizes(Mat A, PetscInt m, PetscInt n, PetscInt M, PetscInt N) 115f69a0ea3SMatthew Knepley { 116284134d9SBarry Smith PetscErrorCode ierr; 117284134d9SBarry Smith 118f69a0ea3SMatthew Knepley PetscFunctionBegin; 119f69a0ea3SMatthew Knepley PetscValidHeaderSpecific(A,MAT_COOKIE,1); 120f69a0ea3SMatthew Knepley if (M > 0 && m > M) SETERRQ2(PETSC_ERR_ARG_INCOMP,"Local column size %D cannot be larger than global column size %D",m,M); 121f69a0ea3SMatthew Knepley if (N > 0 && n > N) SETERRQ2(PETSC_ERR_ARG_INCOMP,"Local row size %D cannot be larger than global row size %D",n,N); 122284134d9SBarry Smith if (A->ops->setsizes) { 123284134d9SBarry Smith /* Since this will not be set until the type has been set, this will NOT be called on the initial 124284134d9SBarry Smith call of MatSetSizes() (which must be called BEFORE MatSetType() */ 125284134d9SBarry Smith ierr = (*A->ops->setsizes)(A,m,n,M,N);CHKERRQ(ierr); 126284134d9SBarry Smith } else { 127d0f46423SBarry Smith if ((A->rmap->n >= 0 || A->rmap->N >= 0) && (A->rmap->n != m || A->rmap->N != M)) SETERRQ4(PETSC_ERR_SUP,"Cannot change/reset row sizes to %D local %D global after previously setting them to %D local %D global",m,M,A->rmap->n,A->rmap->N); 128d0f46423SBarry Smith if ((A->cmap->n >= 0 || A->cmap->N >= 0) && (A->cmap->n != n || A->cmap->N != N)) SETERRQ4(PETSC_ERR_SUP,"Cannot change/reset column sizes to %D local %D global after previously setting them to %D local %D global",n,N,A->cmap->n,A->cmap->N); 129284134d9SBarry Smith } 130d0f46423SBarry Smith A->rmap->n = m; 131d0f46423SBarry Smith A->cmap->n = n; 132d0f46423SBarry Smith A->rmap->N = M; 133d0f46423SBarry Smith A->cmap->N = N; 134117016b1SBarry Smith if (A->ops->create) { 135117016b1SBarry Smith ierr = (*A->ops->create)(A);CHKERRQ(ierr); 136117016b1SBarry Smith A->ops->create = 0; 137117016b1SBarry Smith } 138117016b1SBarry Smith 139f69a0ea3SMatthew Knepley PetscFunctionReturn(0); 140f69a0ea3SMatthew Knepley } 141f69a0ea3SMatthew Knepley 142f69a0ea3SMatthew Knepley #undef __FUNCT__ 1434a2ae208SSatish Balay #define __FUNCT__ "MatSetFromOptions" 14405869f15SSatish Balay /*@ 145273d9f13SBarry Smith MatSetFromOptions - Creates a matrix where the type is determined 146273d9f13SBarry Smith from the options database. Generates a parallel MPI matrix if the 147273d9f13SBarry Smith communicator has more than one processor. The default matrix type is 1487e5f4302SBarry Smith AIJ, using the routines MatCreateSeqAIJ() and MatCreateMPIAIJ() if 1497e5f4302SBarry Smith you do not select a type in the options database. 150273d9f13SBarry Smith 151273d9f13SBarry Smith Collective on Mat 152273d9f13SBarry Smith 153273d9f13SBarry Smith Input Parameter: 154273d9f13SBarry Smith . A - the matrix 155273d9f13SBarry Smith 156273d9f13SBarry Smith Options Database Keys: 157273d9f13SBarry Smith + -mat_type seqaij - AIJ type, uses MatCreateSeqAIJ() 158273d9f13SBarry Smith . -mat_type mpiaij - AIJ type, uses MatCreateMPIAIJ() 159273d9f13SBarry Smith . -mat_type seqdense - dense type, uses MatCreateSeqDense() 160273d9f13SBarry Smith . -mat_type mpidense - dense type, uses MatCreateMPIDense() 161273d9f13SBarry Smith . -mat_type seqbaij - block AIJ type, uses MatCreateSeqBAIJ() 162273d9f13SBarry Smith - -mat_type mpibaij - block AIJ type, uses MatCreateMPIBAIJ() 163273d9f13SBarry Smith 164273d9f13SBarry Smith Even More Options Database Keys: 165273d9f13SBarry Smith See the manpages for particular formats (e.g., MatCreateSeqAIJ()) 166273d9f13SBarry Smith for additional format-specific options. 167bd9ce289SLois Curfman McInnes 1681d69843bSLois Curfman McInnes Level: beginner 1691d69843bSLois Curfman McInnes 170dc401e71SLois Curfman McInnes .keywords: matrix, create 171e0b365e2SLois Curfman McInnes 172fafbff53SBarry Smith .seealso: MatCreateSeqAIJ((), MatCreateMPIAIJ(), 17339ddd567SLois Curfman McInnes MatCreateSeqDense(), MatCreateMPIDense(), 174*6531c467SSatish Balay MatCreateSeqBAIJ(), MatCreateMPIBAIJ(), 175a209d233SLois Curfman McInnes MatCreateSeqSBAIJ(), MatCreateMPISBAIJ(), 176273d9f13SBarry Smith MatConvert() 1777807a1faSBarry Smith @*/ 178be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetFromOptions(Mat B) 1797807a1faSBarry Smith { 180dfbe8321SBarry Smith PetscErrorCode ierr; 181f3be49caSLisandro Dalcin const char *deft = MATAIJ; 182f3be49caSLisandro Dalcin char type[256]; 183273d9f13SBarry Smith PetscTruth flg; 184dbb450caSBarry Smith 1853a40ed3dSBarry Smith PetscFunctionBegin; 186f3be49caSLisandro Dalcin PetscValidHeaderSpecific(B,MAT_COOKIE,1); 187f3be49caSLisandro Dalcin 188f3be49caSLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Matrix options","Mat");CHKERRQ(ierr); 189f3be49caSLisandro Dalcin ierr = PetscOptionsList("-mat_type","Matrix type","MatSetType",MatList,deft,type,256,&flg);CHKERRQ(ierr); 190273d9f13SBarry Smith if (flg) { 191f3be49caSLisandro Dalcin ierr = MatSetType(B,type);CHKERRQ(ierr); 192f3be49caSLisandro Dalcin } else if (!((PetscObject)B)->type_name) { 193f3be49caSLisandro Dalcin ierr = MatSetType(B,deft);CHKERRQ(ierr); 194273d9f13SBarry Smith } 195f3be49caSLisandro Dalcin 196f3be49caSLisandro Dalcin if (B->ops->setfromoptions) { 197f3be49caSLisandro Dalcin ierr = (*B->ops->setfromoptions)(B);CHKERRQ(ierr); 198593c1905SSatish Balay } 199f3be49caSLisandro Dalcin 200f3be49caSLisandro Dalcin ierr = PetscOptionsEnd();CHKERRQ(ierr); 201f3be49caSLisandro Dalcin 2023a40ed3dSBarry Smith PetscFunctionReturn(0); 2037807a1faSBarry Smith } 2047807a1faSBarry Smith 2054a2ae208SSatish Balay #undef __FUNCT__ 2064a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation" 207bc08b0f1SBarry Smith /*@ 208273d9f13SBarry Smith MatSetUpPreallocation 209dae03382SLois Curfman McInnes 210273d9f13SBarry Smith Collective on Mat 211dae03382SLois Curfman McInnes 212273d9f13SBarry Smith Input Parameter: 213273d9f13SBarry Smith . A - the matrix 214d5d45c9bSBarry Smith 215273d9f13SBarry Smith Level: beginner 216d5d45c9bSBarry Smith 217273d9f13SBarry Smith .keywords: matrix, create 218273d9f13SBarry Smith 219273d9f13SBarry Smith .seealso: MatCreateSeqAIJ((), MatCreateMPIAIJ(), 220273d9f13SBarry Smith MatCreateSeqDense(), MatCreateMPIDense(), 221*6531c467SSatish Balay MatCreateSeqBAIJ(), MatCreateMPIBAIJ(), 222273d9f13SBarry Smith MatCreateSeqSBAIJ(), MatCreateMPISBAIJ(), 223273d9f13SBarry Smith MatConvert() 224273d9f13SBarry Smith @*/ 225be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetUpPreallocation(Mat B) 226273d9f13SBarry Smith { 227dfbe8321SBarry Smith PetscErrorCode ierr; 228273d9f13SBarry Smith 229273d9f13SBarry Smith PetscFunctionBegin; 23017667f90SBarry Smith if (!B->preallocated && B->ops->setuppreallocation) { 231ae15b995SBarry Smith ierr = PetscInfo(B,"Warning not preallocating matrix storage\n");CHKERRQ(ierr); 232273d9f13SBarry Smith ierr = (*B->ops->setuppreallocation)(B);CHKERRQ(ierr); 233273d9f13SBarry Smith } 234210f0121SBarry Smith B->preallocated = PETSC_TRUE; 235273d9f13SBarry Smith PetscFunctionReturn(0); 236273d9f13SBarry Smith } 237273d9f13SBarry Smith 238273d9f13SBarry Smith /* 239273d9f13SBarry Smith Copies from Cs header to A 240d0f46423SBarry Smith 241d0f46423SBarry Smith This is somewhat different from MatHeaderReplace() it would be nice to merge the code 242273d9f13SBarry Smith */ 2434a2ae208SSatish Balay #undef __FUNCT__ 2444a2ae208SSatish Balay #define __FUNCT__ "MatHeaderCopy" 245dfbe8321SBarry Smith PetscErrorCode MatHeaderCopy(Mat A,Mat C) 246273d9f13SBarry Smith { 247dfbe8321SBarry Smith PetscErrorCode ierr; 248d44834fbSBarry Smith PetscInt refct; 249273d9f13SBarry Smith PetscOps *Abops; 250273d9f13SBarry Smith MatOps Aops; 251273d9f13SBarry Smith char *mtype,*mname; 25230735b05SKris Buschelman void *spptr; 253273d9f13SBarry Smith 254273d9f13SBarry Smith PetscFunctionBegin; 255273d9f13SBarry Smith /* save the parts of A we need */ 2567adad957SLisandro Dalcin Abops = ((PetscObject)A)->bops; 257273d9f13SBarry Smith Aops = A->ops; 2587adad957SLisandro Dalcin refct = ((PetscObject)A)->refct; 2595c9eb25fSBarry Smith mtype = ((PetscObject)A)->type_name; 2605c9eb25fSBarry Smith mname = ((PetscObject)A)->name; 26130735b05SKris Buschelman spptr = A->spptr; 26230735b05SKris Buschelman 2635c9eb25fSBarry Smith /* zero these so the destroy below does not free them */ 2645c9eb25fSBarry Smith ((PetscObject)A)->type_name = 0; 2655c9eb25fSBarry Smith ((PetscObject)A)->name = 0; 2665c9eb25fSBarry Smith 2677c99f97cSSatish Balay /* free all the interior data structures from mat */ 2687c99f97cSSatish Balay ierr = (*A->ops->destroy)(A);CHKERRQ(ierr); 2697c99f97cSSatish Balay 27030735b05SKris Buschelman ierr = PetscFree(C->spptr);CHKERRQ(ierr); 27105b42c5fSBarry Smith 27226283091SBarry Smith ierr = PetscLayoutDestroy(A->rmap);CHKERRQ(ierr); 27326283091SBarry Smith ierr = PetscLayoutDestroy(A->cmap);CHKERRQ(ierr); 2745c9eb25fSBarry Smith ierr = PetscFListDestroy(&((PetscObject)A)->qlist);CHKERRQ(ierr); 2755c9eb25fSBarry Smith ierr = PetscOListDestroy(((PetscObject)A)->olist);CHKERRQ(ierr); 276273d9f13SBarry Smith 277273d9f13SBarry Smith /* copy C over to A */ 278273d9f13SBarry Smith ierr = PetscMemcpy(A,C,sizeof(struct _p_Mat));CHKERRQ(ierr); 279273d9f13SBarry Smith 280273d9f13SBarry Smith /* return the parts of A we saved */ 2817adad957SLisandro Dalcin ((PetscObject)A)->bops = Abops; 282273d9f13SBarry Smith A->ops = Aops; 2837adad957SLisandro Dalcin ((PetscObject)A)->refct = refct; 2847adad957SLisandro Dalcin ((PetscObject)A)->type_name = mtype; 2857adad957SLisandro Dalcin ((PetscObject)A)->name = mname; 28630735b05SKris Buschelman A->spptr = spptr; 287273d9f13SBarry Smith 2885c9eb25fSBarry Smith /* since these two are copied into A we do not want them destroyed in C */ 2895c9eb25fSBarry Smith ((PetscObject)C)->qlist = 0; 2905c9eb25fSBarry Smith ((PetscObject)C)->olist = 0; 291d38fa0fbSBarry Smith ierr = PetscHeaderDestroy(C);CHKERRQ(ierr); 292273d9f13SBarry Smith PetscFunctionReturn(0); 293273d9f13SBarry Smith } 2948ab5b326SKris Buschelman /* 2958ab5b326SKris Buschelman Replace A's header with that of C 2968ab5b326SKris Buschelman This is essentially code moved from MatDestroy 297d0f46423SBarry Smith 298d0f46423SBarry Smith This is somewhat different from MatHeaderCopy() it would be nice to merge the code 2998ab5b326SKris Buschelman */ 3008ab5b326SKris Buschelman #undef __FUNCT__ 3018ab5b326SKris Buschelman #define __FUNCT__ "MatHeaderReplace" 3028ab5b326SKris Buschelman PetscErrorCode MatHeaderReplace(Mat A,Mat C) 3038ab5b326SKris Buschelman { 3048ab5b326SKris Buschelman PetscErrorCode ierr; 3058ab5b326SKris Buschelman 3068ab5b326SKris Buschelman PetscFunctionBegin; 3076d7c1e57SBarry Smith if (A == C) PetscFunctionReturn(0); 3086d7c1e57SBarry Smith 3098ab5b326SKris Buschelman /* free all the interior data structures from mat */ 3108ab5b326SKris Buschelman ierr = (*A->ops->destroy)(A);CHKERRQ(ierr); 311d2c95936SBarry Smith ierr = PetscHeaderDestroy_Private((PetscObject)A);CHKERRQ(ierr); 312c650bb5fSLisandro Dalcin ierr = PetscFree(A->ops);CHKERRQ(ierr); 31326283091SBarry Smith ierr = PetscLayoutDestroy(A->rmap);CHKERRQ(ierr); 31426283091SBarry Smith ierr = PetscLayoutDestroy(A->cmap);CHKERRQ(ierr); 315d95db058SSatish Balay ierr = PetscFree(A->spptr);CHKERRQ(ierr); 3168ab5b326SKris Buschelman 3178ab5b326SKris Buschelman /* copy C over to A */ 3188ab5b326SKris Buschelman if (C) { 3198ab5b326SKris Buschelman ierr = PetscMemcpy(A,C,sizeof(struct _p_Mat));CHKERRQ(ierr); 3208ab5b326SKris Buschelman ierr = PetscLogObjectDestroy((PetscObject)C);CHKERRQ(ierr); 3218ab5b326SKris Buschelman ierr = PetscFree(C);CHKERRQ(ierr); 3228ab5b326SKris Buschelman } 3238ab5b326SKris Buschelman PetscFunctionReturn(0); 3248ab5b326SKris Buschelman } 325