1be1d678aSKris Buschelman #define PETSCMAT_DLL 27807a1faSBarry Smith 3*7c4f633dSBarry Smith #include "private/matimpl.h" /*I "petscmat.h" I*/ 4325e03aeSBarry Smith #include "petscsys.h" 57807a1faSBarry Smith 67adad957SLisandro Dalcin #if 0 74a2ae208SSatish Balay #undef __FUNCT__ 84a2ae208SSatish Balay #define __FUNCT__ "MatPublish_Base" 96849ba73SBarry Smith static PetscErrorCode MatPublish_Base(PetscObject obj) 1035d8aa7fSBarry Smith { 1135d8aa7fSBarry Smith PetscFunctionBegin; 1235d8aa7fSBarry Smith PetscFunctionReturn(0); 1335d8aa7fSBarry Smith } 147adad957SLisandro Dalcin #endif 1535d8aa7fSBarry Smith 164a2ae208SSatish Balay #undef __FUNCT__ 174a2ae208SSatish Balay #define __FUNCT__ "MatCreate" 1805869f15SSatish Balay /*@ 1969dd0797SLois Curfman McInnes MatCreate - Creates a matrix where the type is determined 207e5f4302SBarry Smith from either a call to MatSetType() or from the options database 217e5f4302SBarry Smith with a call to MatSetFromOptions(). The default matrix type is 227e5f4302SBarry Smith AIJ, using the routines MatCreateSeqAIJ() or MatCreateMPIAIJ() 237e5f4302SBarry Smith if you do not set a type in the options database. If you never 247e5f4302SBarry Smith call MatSetType() or MatSetFromOptions() it will generate an 25f8ab6608SSatish Balay error when you try to use the matrix. 2683e1b59cSLois Curfman McInnes 27cb13003dSBarry Smith Collective on MPI_Comm 28cb13003dSBarry Smith 29f69a0ea3SMatthew Knepley Input Parameter: 30f69a0ea3SMatthew Knepley . comm - MPI communicator 317807a1faSBarry Smith 327807a1faSBarry Smith Output Parameter: 33dc401e71SLois Curfman McInnes . A - the matrix 34e0b365e2SLois Curfman McInnes 35273d9f13SBarry Smith Options Database Keys: 36273d9f13SBarry Smith + -mat_type seqaij - AIJ type, uses MatCreateSeqAIJ() 37273d9f13SBarry Smith . -mat_type mpiaij - AIJ type, uses MatCreateMPIAIJ() 38273d9f13SBarry Smith . -mat_type mpirowbs - rowbs type, uses MatCreateMPIRowbs() 39273d9f13SBarry Smith . -mat_type seqdense - dense type, uses MatCreateSeqDense() 40273d9f13SBarry Smith . -mat_type mpidense - dense type, uses MatCreateMPIDense() 41273d9f13SBarry Smith . -mat_type seqbaij - block AIJ type, uses MatCreateSeqBAIJ() 42273d9f13SBarry Smith - -mat_type mpibaij - block AIJ type, uses MatCreateMPIBAIJ() 43e0b365e2SLois Curfman McInnes 4483e1b59cSLois Curfman McInnes Even More Options Database Keys: 4583e1b59cSLois Curfman McInnes See the manpages for particular formats (e.g., MatCreateSeqAIJ()) 4683e1b59cSLois Curfman McInnes for additional format-specific options. 47e0b365e2SLois Curfman McInnes 48bd9ce289SLois Curfman McInnes Notes: 49ec6e0d80SSatish Balay 50273d9f13SBarry Smith Level: beginner 51273d9f13SBarry Smith 52a2fc510eSBarry Smith User manual sections: 53a2fc510eSBarry Smith + sec_matcreate 54a2fc510eSBarry Smith - chapter_matrices 55a2fc510eSBarry Smith 56273d9f13SBarry Smith .keywords: matrix, create 57273d9f13SBarry Smith 58cd05a4c0SHong Zhang .seealso: MatCreateSeqAIJ(), MatCreateMPIAIJ(), 59273d9f13SBarry Smith MatCreateSeqDense(), MatCreateMPIDense(), 60273d9f13SBarry Smith MatCreateMPIRowbs(), MatCreateSeqBAIJ(), MatCreateMPIBAIJ(), 61273d9f13SBarry Smith MatCreateSeqSBAIJ(), MatCreateMPISBAIJ(), 62273d9f13SBarry Smith MatConvert() 63273d9f13SBarry Smith @*/ 64f69a0ea3SMatthew Knepley PetscErrorCode PETSCMAT_DLLEXPORT MatCreate(MPI_Comm comm,Mat *A) 65273d9f13SBarry Smith { 66273d9f13SBarry Smith Mat B; 67dfbe8321SBarry Smith PetscErrorCode ierr; 68273d9f13SBarry Smith 69273d9f13SBarry Smith PetscFunctionBegin; 70f69a0ea3SMatthew Knepley PetscValidPointer(A,2); 7197f1f81fSBarry Smith 728ba1e511SMatthew Knepley *A = PETSC_NULL; 738ba1e511SMatthew Knepley #ifndef PETSC_USE_DYNAMIC_LIBRARIES 748ba1e511SMatthew Knepley ierr = MatInitializePackage(PETSC_NULL);CHKERRQ(ierr); 758ba1e511SMatthew Knepley #endif 768ba1e511SMatthew Knepley 7752e6d16bSBarry Smith ierr = PetscHeaderCreate(B,_p_Mat,struct _MatOps,MAT_COOKIE,0,"Mat",comm,MatDestroy,MatView);CHKERRQ(ierr); 78d0f46423SBarry Smith ierr = PetscNew(PetscMap,&B->rmap);CHKERRQ(ierr); 79d0f46423SBarry Smith ierr = PetscNew(PetscMap,&B->cmap);CHKERRQ(ierr); 80d0f46423SBarry Smith ierr = PetscMapInitialize(comm,B->rmap);CHKERRQ(ierr); 81d0f46423SBarry Smith ierr = PetscMapInitialize(comm,B->cmap);CHKERRQ(ierr); 82273d9f13SBarry Smith B->preallocated = PETSC_FALSE; 83273d9f13SBarry Smith *A = B; 84273d9f13SBarry Smith PetscFunctionReturn(0); 85273d9f13SBarry Smith } 86273d9f13SBarry Smith 874a2ae208SSatish Balay #undef __FUNCT__ 88f69a0ea3SMatthew Knepley #define __FUNCT__ "MatSetSizes" 89f69a0ea3SMatthew Knepley /*@ 90f69a0ea3SMatthew Knepley MatSetSizes - Sets the local and global sizes, and checks to determine compatibility 91f69a0ea3SMatthew Knepley 92f69a0ea3SMatthew Knepley Collective on Mat 93f69a0ea3SMatthew Knepley 94f69a0ea3SMatthew Knepley Input Parameters: 95f69a0ea3SMatthew Knepley + A - the matrix 96f69a0ea3SMatthew Knepley . m - number of local rows (or PETSC_DECIDE) 97f69a0ea3SMatthew Knepley . n - number of local columns (or PETSC_DECIDE) 98f69a0ea3SMatthew Knepley . M - number of global rows (or PETSC_DETERMINE) 99f69a0ea3SMatthew Knepley - N - number of global columns (or PETSC_DETERMINE) 100f69a0ea3SMatthew Knepley 101f69a0ea3SMatthew Knepley Notes: 102f69a0ea3SMatthew Knepley m (n) and M (N) cannot be both PETSC_DECIDE 103f69a0ea3SMatthew Knepley If one processor calls this with M (N) of PETSC_DECIDE then all processors must, otherwise the program will hang. 104f69a0ea3SMatthew Knepley 105f69a0ea3SMatthew Knepley If PETSC_DECIDE is not used for the arguments 'm' and 'n', then the 106f69a0ea3SMatthew Knepley user must ensure that they are chosen to be compatible with the 107f69a0ea3SMatthew Knepley vectors. To do this, one first considers the matrix-vector product 108f69a0ea3SMatthew Knepley 'y = A x'. The 'm' that is used in the above routine must match the 109f69a0ea3SMatthew Knepley local size used in the vector creation routine VecCreateMPI() for 'y'. 110f69a0ea3SMatthew Knepley Likewise, the 'n' used must match that used as the local size in 111f69a0ea3SMatthew Knepley VecCreateMPI() for 'x'. 112f69a0ea3SMatthew Knepley 113f69a0ea3SMatthew Knepley Level: beginner 114f69a0ea3SMatthew Knepley 115f69a0ea3SMatthew Knepley .seealso: MatGetSize(), PetscSplitOwnership() 116f69a0ea3SMatthew Knepley @*/ 117f69a0ea3SMatthew Knepley PetscErrorCode PETSCMAT_DLLEXPORT MatSetSizes(Mat A, PetscInt m, PetscInt n, PetscInt M, PetscInt N) 118f69a0ea3SMatthew Knepley { 119284134d9SBarry Smith PetscErrorCode ierr; 120284134d9SBarry Smith 121f69a0ea3SMatthew Knepley PetscFunctionBegin; 122f69a0ea3SMatthew Knepley PetscValidHeaderSpecific(A,MAT_COOKIE,1); 123f69a0ea3SMatthew Knepley if (M > 0 && m > M) SETERRQ2(PETSC_ERR_ARG_INCOMP,"Local column size %D cannot be larger than global column size %D",m,M); 124f69a0ea3SMatthew Knepley if (N > 0 && n > N) SETERRQ2(PETSC_ERR_ARG_INCOMP,"Local row size %D cannot be larger than global row size %D",n,N); 125284134d9SBarry Smith if (A->ops->setsizes) { 126284134d9SBarry Smith /* Since this will not be set until the type has been set, this will NOT be called on the initial 127284134d9SBarry Smith call of MatSetSizes() (which must be called BEFORE MatSetType() */ 128284134d9SBarry Smith ierr = (*A->ops->setsizes)(A,m,n,M,N);CHKERRQ(ierr); 129284134d9SBarry Smith } else { 130d0f46423SBarry Smith if ((A->rmap->n >= 0 || A->rmap->N >= 0) && (A->rmap->n != m || A->rmap->N != M)) SETERRQ4(PETSC_ERR_SUP,"Cannot change/reset row sizes to %D local %D global after previously setting them to %D local %D global",m,M,A->rmap->n,A->rmap->N); 131d0f46423SBarry Smith if ((A->cmap->n >= 0 || A->cmap->N >= 0) && (A->cmap->n != n || A->cmap->N != N)) SETERRQ4(PETSC_ERR_SUP,"Cannot change/reset column sizes to %D local %D global after previously setting them to %D local %D global",n,N,A->cmap->n,A->cmap->N); 132284134d9SBarry Smith } 133d0f46423SBarry Smith A->rmap->n = m; 134d0f46423SBarry Smith A->cmap->n = n; 135d0f46423SBarry Smith A->rmap->N = M; 136d0f46423SBarry Smith A->cmap->N = N; 137117016b1SBarry Smith if (A->ops->create) { 138117016b1SBarry Smith ierr = (*A->ops->create)(A);CHKERRQ(ierr); 139117016b1SBarry Smith A->ops->create = 0; 140117016b1SBarry Smith } 141117016b1SBarry Smith 142f69a0ea3SMatthew Knepley PetscFunctionReturn(0); 143f69a0ea3SMatthew Knepley } 144f69a0ea3SMatthew Knepley 145f69a0ea3SMatthew Knepley #undef __FUNCT__ 1464a2ae208SSatish Balay #define __FUNCT__ "MatSetFromOptions" 14705869f15SSatish Balay /*@ 148273d9f13SBarry Smith MatSetFromOptions - Creates a matrix where the type is determined 149273d9f13SBarry Smith from the options database. Generates a parallel MPI matrix if the 150273d9f13SBarry Smith communicator has more than one processor. The default matrix type is 1517e5f4302SBarry Smith AIJ, using the routines MatCreateSeqAIJ() and MatCreateMPIAIJ() if 1527e5f4302SBarry Smith you do not select a type in the options database. 153273d9f13SBarry Smith 154273d9f13SBarry Smith Collective on Mat 155273d9f13SBarry Smith 156273d9f13SBarry Smith Input Parameter: 157273d9f13SBarry Smith . A - the matrix 158273d9f13SBarry Smith 159273d9f13SBarry Smith Options Database Keys: 160273d9f13SBarry Smith + -mat_type seqaij - AIJ type, uses MatCreateSeqAIJ() 161273d9f13SBarry Smith . -mat_type mpiaij - AIJ type, uses MatCreateMPIAIJ() 162273d9f13SBarry Smith . -mat_type mpirowbs - rowbs type, uses MatCreateMPIRowbs() 163273d9f13SBarry Smith . -mat_type seqdense - dense type, uses MatCreateSeqDense() 164273d9f13SBarry Smith . -mat_type mpidense - dense type, uses MatCreateMPIDense() 165273d9f13SBarry Smith . -mat_type seqbaij - block AIJ type, uses MatCreateSeqBAIJ() 166273d9f13SBarry Smith - -mat_type mpibaij - block AIJ type, uses MatCreateMPIBAIJ() 167273d9f13SBarry Smith 168273d9f13SBarry Smith Even More Options Database Keys: 169273d9f13SBarry Smith See the manpages for particular formats (e.g., MatCreateSeqAIJ()) 170273d9f13SBarry Smith for additional format-specific options. 171bd9ce289SLois Curfman McInnes 1721d69843bSLois Curfman McInnes Level: beginner 1731d69843bSLois Curfman McInnes 174dc401e71SLois Curfman McInnes .keywords: matrix, create 175e0b365e2SLois Curfman McInnes 176fafbff53SBarry Smith .seealso: MatCreateSeqAIJ((), MatCreateMPIAIJ(), 17739ddd567SLois Curfman McInnes MatCreateSeqDense(), MatCreateMPIDense(), 178a209d233SLois Curfman McInnes MatCreateMPIRowbs(), MatCreateSeqBAIJ(), MatCreateMPIBAIJ(), 179a209d233SLois Curfman McInnes MatCreateSeqSBAIJ(), MatCreateMPISBAIJ(), 180273d9f13SBarry Smith MatConvert() 1817807a1faSBarry Smith @*/ 182be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetFromOptions(Mat B) 1837807a1faSBarry Smith { 184dfbe8321SBarry Smith PetscErrorCode ierr; 185f3be49caSLisandro Dalcin const char *deft = MATAIJ; 186f3be49caSLisandro Dalcin char type[256]; 187273d9f13SBarry Smith PetscTruth flg; 188dbb450caSBarry Smith 1893a40ed3dSBarry Smith PetscFunctionBegin; 190f3be49caSLisandro Dalcin PetscValidHeaderSpecific(B,MAT_COOKIE,1); 191f3be49caSLisandro Dalcin 192f3be49caSLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Matrix options","Mat");CHKERRQ(ierr); 193f3be49caSLisandro Dalcin ierr = PetscOptionsList("-mat_type","Matrix type","MatSetType",MatList,deft,type,256,&flg);CHKERRQ(ierr); 194273d9f13SBarry Smith if (flg) { 195f3be49caSLisandro Dalcin ierr = MatSetType(B,type);CHKERRQ(ierr); 196f3be49caSLisandro Dalcin } else if (!((PetscObject)B)->type_name) { 197f3be49caSLisandro Dalcin ierr = MatSetType(B,deft);CHKERRQ(ierr); 198273d9f13SBarry Smith } 199f3be49caSLisandro Dalcin 200f3be49caSLisandro Dalcin if (B->ops->setfromoptions) { 201f3be49caSLisandro Dalcin ierr = (*B->ops->setfromoptions)(B);CHKERRQ(ierr); 202593c1905SSatish Balay } 203f3be49caSLisandro Dalcin 204f3be49caSLisandro Dalcin ierr = PetscOptionsEnd();CHKERRQ(ierr); 205f3be49caSLisandro Dalcin 2063a40ed3dSBarry Smith PetscFunctionReturn(0); 2077807a1faSBarry Smith } 2087807a1faSBarry Smith 2094a2ae208SSatish Balay #undef __FUNCT__ 2104a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation" 211bc08b0f1SBarry Smith /*@ 212273d9f13SBarry Smith MatSetUpPreallocation 213dae03382SLois Curfman McInnes 214273d9f13SBarry Smith Collective on Mat 215dae03382SLois Curfman McInnes 216273d9f13SBarry Smith Input Parameter: 217273d9f13SBarry Smith . A - the matrix 218d5d45c9bSBarry Smith 219273d9f13SBarry Smith Level: beginner 220d5d45c9bSBarry Smith 221273d9f13SBarry Smith .keywords: matrix, create 222273d9f13SBarry Smith 223273d9f13SBarry Smith .seealso: MatCreateSeqAIJ((), MatCreateMPIAIJ(), 224273d9f13SBarry Smith MatCreateSeqDense(), MatCreateMPIDense(), 225273d9f13SBarry Smith MatCreateMPIRowbs(), MatCreateSeqBAIJ(), MatCreateMPIBAIJ(), 226273d9f13SBarry Smith MatCreateSeqSBAIJ(), MatCreateMPISBAIJ(), 227273d9f13SBarry Smith MatConvert() 228273d9f13SBarry Smith @*/ 229be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetUpPreallocation(Mat B) 230273d9f13SBarry Smith { 231dfbe8321SBarry Smith PetscErrorCode ierr; 232273d9f13SBarry Smith 233273d9f13SBarry Smith PetscFunctionBegin; 23417667f90SBarry Smith if (!B->preallocated && B->ops->setuppreallocation) { 235ae15b995SBarry Smith ierr = PetscInfo(B,"Warning not preallocating matrix storage\n");CHKERRQ(ierr); 236273d9f13SBarry Smith ierr = (*B->ops->setuppreallocation)(B);CHKERRQ(ierr); 237273d9f13SBarry Smith } 238210f0121SBarry Smith B->preallocated = PETSC_TRUE; 239273d9f13SBarry Smith PetscFunctionReturn(0); 240273d9f13SBarry Smith } 241273d9f13SBarry Smith 242273d9f13SBarry Smith /* 243273d9f13SBarry Smith Copies from Cs header to A 244d0f46423SBarry Smith 245d0f46423SBarry Smith This is somewhat different from MatHeaderReplace() it would be nice to merge the code 246273d9f13SBarry Smith */ 2474a2ae208SSatish Balay #undef __FUNCT__ 2484a2ae208SSatish Balay #define __FUNCT__ "MatHeaderCopy" 249dfbe8321SBarry Smith PetscErrorCode MatHeaderCopy(Mat A,Mat C) 250273d9f13SBarry Smith { 251dfbe8321SBarry Smith PetscErrorCode ierr; 252d44834fbSBarry Smith PetscInt refct; 253273d9f13SBarry Smith PetscOps *Abops; 254273d9f13SBarry Smith MatOps Aops; 255273d9f13SBarry Smith char *mtype,*mname; 25630735b05SKris Buschelman void *spptr; 257273d9f13SBarry Smith 258273d9f13SBarry Smith PetscFunctionBegin; 259273d9f13SBarry Smith /* save the parts of A we need */ 2607adad957SLisandro Dalcin Abops = ((PetscObject)A)->bops; 261273d9f13SBarry Smith Aops = A->ops; 2627adad957SLisandro Dalcin refct = ((PetscObject)A)->refct; 2635c9eb25fSBarry Smith mtype = ((PetscObject)A)->type_name; 2645c9eb25fSBarry Smith mname = ((PetscObject)A)->name; 26530735b05SKris Buschelman spptr = A->spptr; 26630735b05SKris Buschelman 2675c9eb25fSBarry Smith /* zero these so the destroy below does not free them */ 2685c9eb25fSBarry Smith ((PetscObject)A)->type_name = 0; 2695c9eb25fSBarry Smith ((PetscObject)A)->name = 0; 2705c9eb25fSBarry Smith 2717c99f97cSSatish Balay /* free all the interior data structures from mat */ 2727c99f97cSSatish Balay ierr = (*A->ops->destroy)(A);CHKERRQ(ierr); 2737c99f97cSSatish Balay 27430735b05SKris Buschelman ierr = PetscFree(C->spptr);CHKERRQ(ierr); 27505b42c5fSBarry Smith 276d0f46423SBarry Smith ierr = PetscMapDestroy(A->rmap);CHKERRQ(ierr); 277d0f46423SBarry Smith ierr = PetscMapDestroy(A->cmap);CHKERRQ(ierr); 2785c9eb25fSBarry Smith ierr = PetscFListDestroy(&((PetscObject)A)->qlist);CHKERRQ(ierr); 2795c9eb25fSBarry Smith ierr = PetscOListDestroy(((PetscObject)A)->olist);CHKERRQ(ierr); 280273d9f13SBarry Smith 281273d9f13SBarry Smith /* copy C over to A */ 282273d9f13SBarry Smith ierr = PetscMemcpy(A,C,sizeof(struct _p_Mat));CHKERRQ(ierr); 283273d9f13SBarry Smith 284273d9f13SBarry Smith /* return the parts of A we saved */ 2857adad957SLisandro Dalcin ((PetscObject)A)->bops = Abops; 286273d9f13SBarry Smith A->ops = Aops; 2877adad957SLisandro Dalcin ((PetscObject)A)->refct = refct; 2887adad957SLisandro Dalcin ((PetscObject)A)->type_name = mtype; 2897adad957SLisandro Dalcin ((PetscObject)A)->name = mname; 29030735b05SKris Buschelman A->spptr = spptr; 291273d9f13SBarry Smith 2925c9eb25fSBarry Smith /* since these two are copied into A we do not want them destroyed in C */ 2935c9eb25fSBarry Smith ((PetscObject)C)->qlist = 0; 2945c9eb25fSBarry Smith ((PetscObject)C)->olist = 0; 295d38fa0fbSBarry Smith ierr = PetscHeaderDestroy(C);CHKERRQ(ierr); 296273d9f13SBarry Smith PetscFunctionReturn(0); 297273d9f13SBarry Smith } 2988ab5b326SKris Buschelman /* 2998ab5b326SKris Buschelman Replace A's header with that of C 3008ab5b326SKris Buschelman This is essentially code moved from MatDestroy 301d0f46423SBarry Smith 302d0f46423SBarry Smith This is somewhat different from MatHeaderCopy() it would be nice to merge the code 3038ab5b326SKris Buschelman */ 3048ab5b326SKris Buschelman #undef __FUNCT__ 3058ab5b326SKris Buschelman #define __FUNCT__ "MatHeaderReplace" 3068ab5b326SKris Buschelman PetscErrorCode MatHeaderReplace(Mat A,Mat C) 3078ab5b326SKris Buschelman { 3088ab5b326SKris Buschelman PetscErrorCode ierr; 3098ab5b326SKris Buschelman 3108ab5b326SKris Buschelman PetscFunctionBegin; 3116d7c1e57SBarry Smith if (A == C) PetscFunctionReturn(0); 3126d7c1e57SBarry Smith 3138ab5b326SKris Buschelman /* free all the interior data structures from mat */ 3148ab5b326SKris Buschelman ierr = (*A->ops->destroy)(A);CHKERRQ(ierr); 315d2c95936SBarry Smith ierr = PetscHeaderDestroy_Private((PetscObject)A);CHKERRQ(ierr); 316c650bb5fSLisandro Dalcin ierr = PetscFree(A->ops);CHKERRQ(ierr); 317d0f46423SBarry Smith ierr = PetscMapDestroy(A->rmap);CHKERRQ(ierr); 318d0f46423SBarry Smith ierr = PetscMapDestroy(A->cmap);CHKERRQ(ierr); 319d95db058SSatish Balay ierr = PetscFree(A->spptr);CHKERRQ(ierr); 3208ab5b326SKris Buschelman 3218ab5b326SKris Buschelman /* copy C over to A */ 3228ab5b326SKris Buschelman if (C) { 3238ab5b326SKris Buschelman ierr = PetscMemcpy(A,C,sizeof(struct _p_Mat));CHKERRQ(ierr); 3248ab5b326SKris Buschelman ierr = PetscLogObjectDestroy((PetscObject)C);CHKERRQ(ierr); 3258ab5b326SKris Buschelman ierr = PetscFree(C);CHKERRQ(ierr); 3268ab5b326SKris Buschelman } 3278ab5b326SKris Buschelman PetscFunctionReturn(0); 3288ab5b326SKris Buschelman } 329