1be1d678aSKris Buschelman #define PETSCMAT_DLL 27807a1faSBarry Smith 3273d9f13SBarry Smith #include "src/mat/matimpl.h" /*I "petscmat.h" I*/ 4325e03aeSBarry Smith #include "petscsys.h" 57807a1faSBarry Smith 64a2ae208SSatish Balay #undef __FUNCT__ 74a2ae208SSatish Balay #define __FUNCT__ "MatPublish_Base" 86849ba73SBarry Smith static PetscErrorCode MatPublish_Base(PetscObject obj) 935d8aa7fSBarry Smith { 1035d8aa7fSBarry Smith PetscFunctionBegin; 1135d8aa7fSBarry Smith PetscFunctionReturn(0); 1235d8aa7fSBarry Smith } 1335d8aa7fSBarry Smith 1435d8aa7fSBarry Smith 154a2ae208SSatish Balay #undef __FUNCT__ 164a2ae208SSatish Balay #define __FUNCT__ "MatCreate" 1705869f15SSatish Balay /*@ 1869dd0797SLois Curfman McInnes MatCreate - Creates a matrix where the type is determined 197e5f4302SBarry Smith from either a call to MatSetType() or from the options database 207e5f4302SBarry Smith with a call to MatSetFromOptions(). The default matrix type is 217e5f4302SBarry Smith AIJ, using the routines MatCreateSeqAIJ() or MatCreateMPIAIJ() 227e5f4302SBarry Smith if you do not set a type in the options database. If you never 237e5f4302SBarry Smith call MatSetType() or MatSetFromOptions() it will generate an 24f8ab6608SSatish Balay error when you try to use the matrix. 2583e1b59cSLois Curfman McInnes 26cb13003dSBarry Smith Collective on MPI_Comm 27cb13003dSBarry Smith 28f69a0ea3SMatthew Knepley Input Parameter: 29f69a0ea3SMatthew Knepley . comm - MPI communicator 307807a1faSBarry Smith 317807a1faSBarry Smith Output Parameter: 32dc401e71SLois Curfman McInnes . A - the matrix 33e0b365e2SLois Curfman McInnes 34273d9f13SBarry Smith Options Database Keys: 35273d9f13SBarry Smith + -mat_type seqaij - AIJ type, uses MatCreateSeqAIJ() 36273d9f13SBarry Smith . -mat_type mpiaij - AIJ type, uses MatCreateMPIAIJ() 37273d9f13SBarry Smith . -mat_type seqbdiag - block diagonal type, uses MatCreateSeqBDiag() 38273d9f13SBarry Smith . -mat_type mpibdiag - block diagonal type, uses MatCreateMPIBDiag() 39273d9f13SBarry Smith . -mat_type mpirowbs - rowbs type, uses MatCreateMPIRowbs() 40273d9f13SBarry Smith . -mat_type seqdense - dense type, uses MatCreateSeqDense() 41273d9f13SBarry Smith . -mat_type mpidense - dense type, uses MatCreateMPIDense() 42273d9f13SBarry Smith . -mat_type seqbaij - block AIJ type, uses MatCreateSeqBAIJ() 43273d9f13SBarry Smith - -mat_type mpibaij - block AIJ type, uses MatCreateMPIBAIJ() 44e0b365e2SLois Curfman McInnes 4583e1b59cSLois Curfman McInnes Even More Options Database Keys: 4683e1b59cSLois Curfman McInnes See the manpages for particular formats (e.g., MatCreateSeqAIJ()) 4783e1b59cSLois Curfman McInnes for additional format-specific options. 48e0b365e2SLois Curfman McInnes 49bd9ce289SLois Curfman McInnes Notes: 50ec6e0d80SSatish Balay 51273d9f13SBarry Smith Level: beginner 52273d9f13SBarry Smith 53a2fc510eSBarry Smith User manual sections: 54a2fc510eSBarry Smith + sec_matcreate 55a2fc510eSBarry Smith - chapter_matrices 56a2fc510eSBarry Smith 57273d9f13SBarry Smith .keywords: matrix, create 58273d9f13SBarry Smith 59273d9f13SBarry Smith .seealso: MatCreateSeqAIJ((), MatCreateMPIAIJ(), 60273d9f13SBarry Smith MatCreateSeqBDiag(),MatCreateMPIBDiag(), 61273d9f13SBarry Smith MatCreateSeqDense(), MatCreateMPIDense(), 62273d9f13SBarry Smith MatCreateMPIRowbs(), MatCreateSeqBAIJ(), MatCreateMPIBAIJ(), 63273d9f13SBarry Smith MatCreateSeqSBAIJ(), MatCreateMPISBAIJ(), 64273d9f13SBarry Smith MatConvert() 65273d9f13SBarry Smith @*/ 66f69a0ea3SMatthew Knepley PetscErrorCode PETSCMAT_DLLEXPORT MatCreate(MPI_Comm comm,Mat *A) 67273d9f13SBarry Smith { 68273d9f13SBarry Smith Mat B; 69dfbe8321SBarry Smith PetscErrorCode ierr; 70273d9f13SBarry Smith 71273d9f13SBarry Smith PetscFunctionBegin; 72f69a0ea3SMatthew Knepley PetscValidPointer(A,2); 7397f1f81fSBarry Smith 748ba1e511SMatthew Knepley *A = PETSC_NULL; 758ba1e511SMatthew Knepley #ifndef PETSC_USE_DYNAMIC_LIBRARIES 768ba1e511SMatthew Knepley ierr = MatInitializePackage(PETSC_NULL);CHKERRQ(ierr); 778ba1e511SMatthew Knepley #endif 788ba1e511SMatthew Knepley 7952e6d16bSBarry Smith ierr = PetscHeaderCreate(B,_p_Mat,struct _MatOps,MAT_COOKIE,0,"Mat",comm,MatDestroy,MatView);CHKERRQ(ierr); 80f69a0ea3SMatthew Knepley B->m = -1; 81f69a0ea3SMatthew Knepley B->M = -1; 82f69a0ea3SMatthew Knepley B->n = -1; 83f69a0ea3SMatthew Knepley B->N = -1; 84521d7252SBarry Smith B->bs = 1; 85273d9f13SBarry Smith B->preallocated = PETSC_FALSE; 8635d8aa7fSBarry Smith B->bops->publish = MatPublish_Base; 87273d9f13SBarry Smith *A = B; 88273d9f13SBarry Smith PetscFunctionReturn(0); 89273d9f13SBarry Smith } 90273d9f13SBarry Smith 914a2ae208SSatish Balay #undef __FUNCT__ 92f69a0ea3SMatthew Knepley #define __FUNCT__ "MatSetSizes" 93f69a0ea3SMatthew Knepley /*@ 94f69a0ea3SMatthew Knepley MatSetSizes - Sets the local and global sizes, and checks to determine compatibility 95f69a0ea3SMatthew Knepley 96f69a0ea3SMatthew Knepley Collective on Mat 97f69a0ea3SMatthew Knepley 98f69a0ea3SMatthew Knepley Input Parameters: 99f69a0ea3SMatthew Knepley + A - the matrix 100f69a0ea3SMatthew Knepley . m - number of local rows (or PETSC_DECIDE) 101f69a0ea3SMatthew Knepley . n - number of local columns (or PETSC_DECIDE) 102f69a0ea3SMatthew Knepley . M - number of global rows (or PETSC_DETERMINE) 103f69a0ea3SMatthew Knepley - N - number of global columns (or PETSC_DETERMINE) 104f69a0ea3SMatthew Knepley 105f69a0ea3SMatthew Knepley Notes: 106f69a0ea3SMatthew Knepley m (n) and M (N) cannot be both PETSC_DECIDE 107f69a0ea3SMatthew Knepley If one processor calls this with M (N) of PETSC_DECIDE then all processors must, otherwise the program will hang. 108f69a0ea3SMatthew Knepley 109f69a0ea3SMatthew Knepley If PETSC_DECIDE is not used for the arguments 'm' and 'n', then the 110f69a0ea3SMatthew Knepley user must ensure that they are chosen to be compatible with the 111f69a0ea3SMatthew Knepley vectors. To do this, one first considers the matrix-vector product 112f69a0ea3SMatthew Knepley 'y = A x'. The 'm' that is used in the above routine must match the 113f69a0ea3SMatthew Knepley local size used in the vector creation routine VecCreateMPI() for 'y'. 114f69a0ea3SMatthew Knepley Likewise, the 'n' used must match that used as the local size in 115f69a0ea3SMatthew Knepley VecCreateMPI() for 'x'. 116f69a0ea3SMatthew Knepley 117f69a0ea3SMatthew Knepley Level: beginner 118f69a0ea3SMatthew Knepley 119f69a0ea3SMatthew Knepley .seealso: MatGetSize(), PetscSplitOwnership() 120f69a0ea3SMatthew Knepley @*/ 121f69a0ea3SMatthew Knepley PetscErrorCode PETSCMAT_DLLEXPORT MatSetSizes(Mat A, PetscInt m, PetscInt n, PetscInt M, PetscInt N) 122f69a0ea3SMatthew Knepley { 123284134d9SBarry Smith PetscErrorCode ierr; 124284134d9SBarry Smith 125f69a0ea3SMatthew Knepley PetscFunctionBegin; 126f69a0ea3SMatthew Knepley PetscValidHeaderSpecific(A,MAT_COOKIE,1); 127f69a0ea3SMatthew Knepley if (M > 0 && m > M) SETERRQ2(PETSC_ERR_ARG_INCOMP,"Local column size %D cannot be larger than global column size %D",m,M); 128f69a0ea3SMatthew Knepley if (N > 0 && n > N) SETERRQ2(PETSC_ERR_ARG_INCOMP,"Local row size %D cannot be larger than global row size %D",n,N); 129284134d9SBarry Smith if (A->ops->setsizes) { 130284134d9SBarry Smith /* Since this will not be set until the type has been set, this will NOT be called on the initial 131284134d9SBarry Smith call of MatSetSizes() (which must be called BEFORE MatSetType() */ 132284134d9SBarry Smith ierr = (*A->ops->setsizes)(A,m,n,M,N);CHKERRQ(ierr); 133284134d9SBarry Smith } else { 134f69a0ea3SMatthew Knepley if ((A->m >= 0 || A->M >= 0) && (A->m != m || A->M != M)) SETERRQ4(PETSC_ERR_SUP,"Cannot change/reset row sizes to %D local %D global after previously setting them to %D local %D global",m,M,A->m,A->M); 135f69a0ea3SMatthew Knepley if ((A->n >= 0 || A->N >= 0) && (A->n != n || A->N != N)) SETERRQ4(PETSC_ERR_SUP,"Cannot change/reset column sizes to %D local %D global after previously setting them to %D local %D global",n,N,A->n,A->N); 136284134d9SBarry Smith } 137f69a0ea3SMatthew Knepley A->m = m; 138f69a0ea3SMatthew Knepley A->n = n; 139f69a0ea3SMatthew Knepley A->M = M; 140f69a0ea3SMatthew Knepley A->N = N; 141f69a0ea3SMatthew Knepley PetscFunctionReturn(0); 142f69a0ea3SMatthew Knepley } 143f69a0ea3SMatthew Knepley 144f69a0ea3SMatthew Knepley #undef __FUNCT__ 1454a2ae208SSatish Balay #define __FUNCT__ "MatSetFromOptions" 14605869f15SSatish Balay /*@ 147273d9f13SBarry Smith MatSetFromOptions - Creates a matrix where the type is determined 148273d9f13SBarry Smith from the options database. Generates a parallel MPI matrix if the 149273d9f13SBarry Smith communicator has more than one processor. The default matrix type is 1507e5f4302SBarry Smith AIJ, using the routines MatCreateSeqAIJ() and MatCreateMPIAIJ() if 1517e5f4302SBarry Smith you do not select a type in the options database. 152273d9f13SBarry Smith 153273d9f13SBarry Smith Collective on Mat 154273d9f13SBarry Smith 155273d9f13SBarry Smith Input Parameter: 156273d9f13SBarry Smith . A - the matrix 157273d9f13SBarry Smith 158273d9f13SBarry Smith Options Database Keys: 159273d9f13SBarry Smith + -mat_type seqaij - AIJ type, uses MatCreateSeqAIJ() 160273d9f13SBarry Smith . -mat_type mpiaij - AIJ type, uses MatCreateMPIAIJ() 161273d9f13SBarry Smith . -mat_type seqbdiag - block diagonal type, uses MatCreateSeqBDiag() 162273d9f13SBarry Smith . -mat_type mpibdiag - block diagonal type, uses MatCreateMPIBDiag() 163273d9f13SBarry Smith . -mat_type mpirowbs - rowbs type, uses MatCreateMPIRowbs() 164273d9f13SBarry Smith . -mat_type seqdense - dense type, uses MatCreateSeqDense() 165273d9f13SBarry Smith . -mat_type mpidense - dense type, uses MatCreateMPIDense() 166273d9f13SBarry Smith . -mat_type seqbaij - block AIJ type, uses MatCreateSeqBAIJ() 167273d9f13SBarry Smith - -mat_type mpibaij - block AIJ type, uses MatCreateMPIBAIJ() 168273d9f13SBarry Smith 169273d9f13SBarry Smith Even More Options Database Keys: 170273d9f13SBarry Smith See the manpages for particular formats (e.g., MatCreateSeqAIJ()) 171273d9f13SBarry Smith for additional format-specific options. 172bd9ce289SLois Curfman McInnes 1731d69843bSLois Curfman McInnes Level: beginner 1741d69843bSLois Curfman McInnes 175dc401e71SLois Curfman McInnes .keywords: matrix, create 176e0b365e2SLois Curfman McInnes 177fafbff53SBarry Smith .seealso: MatCreateSeqAIJ((), MatCreateMPIAIJ(), 178fafbff53SBarry Smith MatCreateSeqBDiag(),MatCreateMPIBDiag(), 17939ddd567SLois Curfman McInnes MatCreateSeqDense(), MatCreateMPIDense(), 180a209d233SLois Curfman McInnes MatCreateMPIRowbs(), MatCreateSeqBAIJ(), MatCreateMPIBAIJ(), 181a209d233SLois Curfman McInnes MatCreateSeqSBAIJ(), MatCreateMPISBAIJ(), 182273d9f13SBarry Smith MatConvert() 1837807a1faSBarry Smith @*/ 184be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetFromOptions(Mat B) 1857807a1faSBarry Smith { 186dfbe8321SBarry Smith PetscErrorCode ierr; 187273d9f13SBarry Smith char mtype[256]; 188273d9f13SBarry Smith PetscTruth flg; 189dbb450caSBarry Smith 1903a40ed3dSBarry Smith PetscFunctionBegin; 191b0a32e0cSBarry Smith ierr = PetscOptionsGetString(B->prefix,"-mat_type",mtype,256,&flg);CHKERRQ(ierr); 192273d9f13SBarry Smith if (flg) { 193273d9f13SBarry Smith ierr = MatSetType(B,mtype);CHKERRQ(ierr); 194273d9f13SBarry Smith } 195273d9f13SBarry Smith if (!B->type_name) { 19630735b05SKris Buschelman ierr = MatSetType(B,MATAIJ);CHKERRQ(ierr); 197dfa27b74SSatish Balay } 1983a40ed3dSBarry Smith PetscFunctionReturn(0); 1997807a1faSBarry Smith } 2007807a1faSBarry Smith 2014a2ae208SSatish Balay #undef __FUNCT__ 2024a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation" 203273d9f13SBarry Smith /*@C 204273d9f13SBarry Smith MatSetUpPreallocation 205dae03382SLois Curfman McInnes 206273d9f13SBarry Smith Collective on Mat 207dae03382SLois Curfman McInnes 208273d9f13SBarry Smith Input Parameter: 209273d9f13SBarry Smith . A - the matrix 210d5d45c9bSBarry Smith 211273d9f13SBarry Smith Level: beginner 212d5d45c9bSBarry Smith 213273d9f13SBarry Smith .keywords: matrix, create 214273d9f13SBarry Smith 215273d9f13SBarry Smith .seealso: MatCreateSeqAIJ((), MatCreateMPIAIJ(), 216273d9f13SBarry Smith MatCreateSeqBDiag(),MatCreateMPIBDiag(), 217273d9f13SBarry Smith MatCreateSeqDense(), MatCreateMPIDense(), 218273d9f13SBarry Smith MatCreateMPIRowbs(), MatCreateSeqBAIJ(), MatCreateMPIBAIJ(), 219273d9f13SBarry Smith MatCreateSeqSBAIJ(), MatCreateMPISBAIJ(), 220273d9f13SBarry Smith MatConvert() 221273d9f13SBarry Smith @*/ 222be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetUpPreallocation(Mat B) 223273d9f13SBarry Smith { 224dfbe8321SBarry Smith PetscErrorCode ierr; 225273d9f13SBarry Smith 226273d9f13SBarry Smith PetscFunctionBegin; 227273d9f13SBarry Smith if (B->ops->setuppreallocation) { 228*ae15b995SBarry Smith ierr = PetscInfo(B,"Warning not preallocating matrix storage\n");CHKERRQ(ierr); 229273d9f13SBarry Smith ierr = (*B->ops->setuppreallocation)(B);CHKERRQ(ierr); 230273d9f13SBarry Smith B->ops->setuppreallocation = 0; 231273d9f13SBarry Smith } 232210f0121SBarry Smith B->preallocated = PETSC_TRUE; 233273d9f13SBarry Smith PetscFunctionReturn(0); 234273d9f13SBarry Smith } 235273d9f13SBarry Smith 236273d9f13SBarry Smith /* 237273d9f13SBarry Smith Copies from Cs header to A 238273d9f13SBarry Smith */ 2394a2ae208SSatish Balay #undef __FUNCT__ 2404a2ae208SSatish Balay #define __FUNCT__ "MatHeaderCopy" 241dfbe8321SBarry Smith PetscErrorCode MatHeaderCopy(Mat A,Mat C) 242273d9f13SBarry Smith { 243dfbe8321SBarry Smith PetscErrorCode ierr; 244d44834fbSBarry Smith PetscInt refct; 245273d9f13SBarry Smith PetscOps *Abops; 246273d9f13SBarry Smith MatOps Aops; 247273d9f13SBarry Smith char *mtype,*mname; 24830735b05SKris Buschelman void *spptr; 249273d9f13SBarry Smith 250273d9f13SBarry Smith PetscFunctionBegin; 251273d9f13SBarry Smith /* free all the interior data structures from mat */ 252273d9f13SBarry Smith ierr = (*A->ops->destroy)(A);CHKERRQ(ierr); 253273d9f13SBarry Smith 2548a124369SBarry Smith ierr = PetscMapDestroy(A->rmap);CHKERRQ(ierr); 2558a124369SBarry Smith ierr = PetscMapDestroy(A->cmap);CHKERRQ(ierr); 256273d9f13SBarry Smith 257273d9f13SBarry Smith /* save the parts of A we need */ 258273d9f13SBarry Smith Abops = A->bops; 259273d9f13SBarry Smith Aops = A->ops; 260273d9f13SBarry Smith refct = A->refct; 261273d9f13SBarry Smith mtype = A->type_name; 262273d9f13SBarry Smith mname = A->name; 26330735b05SKris Buschelman spptr = A->spptr; 26430735b05SKris Buschelman 26530735b05SKris Buschelman if (C->spptr) { 26630735b05SKris Buschelman ierr = PetscFree(C->spptr);CHKERRQ(ierr); 26730735b05SKris Buschelman C->spptr = PETSC_NULL; 26830735b05SKris Buschelman } 269273d9f13SBarry Smith 270273d9f13SBarry Smith /* copy C over to A */ 271273d9f13SBarry Smith ierr = PetscMemcpy(A,C,sizeof(struct _p_Mat));CHKERRQ(ierr); 272273d9f13SBarry Smith 273273d9f13SBarry Smith /* return the parts of A we saved */ 274273d9f13SBarry Smith A->bops = Abops; 275273d9f13SBarry Smith A->ops = Aops; 276273d9f13SBarry Smith A->qlist = 0; 277273d9f13SBarry Smith A->refct = refct; 278273d9f13SBarry Smith A->type_name = mtype; 279273d9f13SBarry Smith A->name = mname; 28030735b05SKris Buschelman A->spptr = spptr; 281273d9f13SBarry Smith 282d38fa0fbSBarry Smith ierr = PetscHeaderDestroy(C);CHKERRQ(ierr); 283273d9f13SBarry Smith PetscFunctionReturn(0); 284273d9f13SBarry Smith } 2858ab5b326SKris Buschelman /* 2868ab5b326SKris Buschelman Replace A's header with that of C 2878ab5b326SKris Buschelman This is essentially code moved from MatDestroy 2888ab5b326SKris Buschelman */ 2898ab5b326SKris Buschelman #undef __FUNCT__ 2908ab5b326SKris Buschelman #define __FUNCT__ "MatHeaderReplace" 2918ab5b326SKris Buschelman PetscErrorCode MatHeaderReplace(Mat A,Mat C) 2928ab5b326SKris Buschelman { 2938ab5b326SKris Buschelman PetscErrorCode ierr; 2948ab5b326SKris Buschelman 2958ab5b326SKris Buschelman PetscFunctionBegin; 2968ab5b326SKris Buschelman /* free all the interior data structures from mat */ 2978ab5b326SKris Buschelman ierr = (*A->ops->destroy)(A);CHKERRQ(ierr); 298d2c95936SBarry Smith ierr = PetscHeaderDestroy_Private((PetscObject)A);CHKERRQ(ierr); 299cb8bee85SHong Zhang ierr = PetscMapDestroy(A->rmap);CHKERRQ(ierr); 300cb8bee85SHong Zhang ierr = PetscMapDestroy(A->cmap);CHKERRQ(ierr); 3018ab5b326SKris Buschelman 3028ab5b326SKris Buschelman /* copy C over to A */ 3038ab5b326SKris Buschelman if (C) { 3048ab5b326SKris Buschelman ierr = PetscMemcpy(A,C,sizeof(struct _p_Mat));CHKERRQ(ierr); 3058ab5b326SKris Buschelman ierr = PetscLogObjectDestroy((PetscObject)C);CHKERRQ(ierr); 3068ab5b326SKris Buschelman ierr = PetscFree(C);CHKERRQ(ierr); 3078ab5b326SKris Buschelman } 3088ab5b326SKris Buschelman PetscFunctionReturn(0); 3098ab5b326SKris Buschelman } 310