17807a1faSBarry Smith 2273d9f13SBarry Smith #include "src/mat/matimpl.h" /*I "petscmat.h" I*/ 3325e03aeSBarry Smith #include "petscsys.h" 47807a1faSBarry Smith 54a2ae208SSatish Balay #undef __FUNCT__ 64a2ae208SSatish Balay #define __FUNCT__ "MatPublish_Base" 76849ba73SBarry Smith static PetscErrorCode MatPublish_Base(PetscObject obj) 835d8aa7fSBarry Smith { 935d8aa7fSBarry Smith PetscFunctionBegin; 1035d8aa7fSBarry Smith PetscFunctionReturn(0); 1135d8aa7fSBarry Smith } 1235d8aa7fSBarry Smith 1335d8aa7fSBarry Smith 144a2ae208SSatish Balay #undef __FUNCT__ 154a2ae208SSatish Balay #define __FUNCT__ "MatCreate" 16325ab940SBarry Smith /*@C 1769dd0797SLois Curfman McInnes MatCreate - Creates a matrix where the type is determined 187e5f4302SBarry Smith from either a call to MatSetType() or from the options database 197e5f4302SBarry Smith with a call to MatSetFromOptions(). The default matrix type is 207e5f4302SBarry Smith AIJ, using the routines MatCreateSeqAIJ() or MatCreateMPIAIJ() 217e5f4302SBarry Smith if you do not set a type in the options database. If you never 227e5f4302SBarry Smith call MatSetType() or MatSetFromOptions() it will generate an 23f8ab6608SSatish Balay error when you try to use the matrix. 2483e1b59cSLois Curfman McInnes 25cb13003dSBarry Smith Collective on MPI_Comm 26cb13003dSBarry Smith 277807a1faSBarry Smith Input Parameters: 2882b900a8SBarry Smith + m - number of local rows (or PETSC_DECIDE) 2982b900a8SBarry Smith . n - number of local columns (or PETSC_DECIDE) 3082b900a8SBarry Smith . M - number of global rows (or PETSC_DETERMINE) 3182b900a8SBarry Smith . N - number of global columns (or PETSC_DETERMINE) 32cb13003dSBarry Smith - comm - MPI communicator 337807a1faSBarry Smith 347807a1faSBarry Smith Output Parameter: 35dc401e71SLois Curfman McInnes . A - the matrix 36e0b365e2SLois Curfman McInnes 37273d9f13SBarry Smith Options Database Keys: 38273d9f13SBarry Smith + -mat_type seqaij - AIJ type, uses MatCreateSeqAIJ() 39273d9f13SBarry Smith . -mat_type mpiaij - AIJ type, uses MatCreateMPIAIJ() 40273d9f13SBarry Smith . -mat_type seqbdiag - block diagonal type, uses MatCreateSeqBDiag() 41273d9f13SBarry Smith . -mat_type mpibdiag - block diagonal type, uses MatCreateMPIBDiag() 42273d9f13SBarry Smith . -mat_type mpirowbs - rowbs type, uses MatCreateMPIRowbs() 43273d9f13SBarry Smith . -mat_type seqdense - dense type, uses MatCreateSeqDense() 44273d9f13SBarry Smith . -mat_type mpidense - dense type, uses MatCreateMPIDense() 45273d9f13SBarry Smith . -mat_type seqbaij - block AIJ type, uses MatCreateSeqBAIJ() 46273d9f13SBarry Smith - -mat_type mpibaij - block AIJ type, uses MatCreateMPIBAIJ() 47e0b365e2SLois Curfman McInnes 4883e1b59cSLois Curfman McInnes Even More Options Database Keys: 4983e1b59cSLois Curfman McInnes See the manpages for particular formats (e.g., MatCreateSeqAIJ()) 5083e1b59cSLois Curfman McInnes for additional format-specific options. 51e0b365e2SLois Curfman McInnes 52bd9ce289SLois Curfman McInnes Notes: 53ec6e0d80SSatish Balay If PETSC_DECIDE is not used for the arguments 'm' and 'n', then the 54ec6e0d80SSatish Balay user must ensure that they are chosen to be compatible with the 55ec6e0d80SSatish Balay vectors. To do this, one first considers the matrix-vector product 56ec6e0d80SSatish Balay 'y = A x'. The 'm' that is used in the above routine must match the 57ec6e0d80SSatish Balay local size used in the vector creation routine VecCreateMPI() for 'y'. 58ec6e0d80SSatish Balay Likewise, the 'n' used must match that used as the local size in 59ec6e0d80SSatish Balay VecCreateMPI() for 'x'. 60ec6e0d80SSatish Balay 61273d9f13SBarry Smith Level: beginner 62273d9f13SBarry Smith 63a2fc510eSBarry Smith User manual sections: 64a2fc510eSBarry Smith + sec_matcreate 65a2fc510eSBarry Smith - chapter_matrices 66a2fc510eSBarry Smith 67273d9f13SBarry Smith .keywords: matrix, create 68273d9f13SBarry Smith 69273d9f13SBarry Smith .seealso: MatCreateSeqAIJ((), MatCreateMPIAIJ(), 70273d9f13SBarry Smith MatCreateSeqBDiag(),MatCreateMPIBDiag(), 71273d9f13SBarry Smith MatCreateSeqDense(), MatCreateMPIDense(), 72273d9f13SBarry Smith MatCreateMPIRowbs(), MatCreateSeqBAIJ(), MatCreateMPIBAIJ(), 73273d9f13SBarry Smith MatCreateSeqSBAIJ(), MatCreateMPISBAIJ(), 74273d9f13SBarry Smith MatConvert() 75273d9f13SBarry Smith @*/ 7638baddfdSBarry Smith PetscErrorCode MatCreate(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,Mat *A) 77273d9f13SBarry Smith { 78273d9f13SBarry Smith Mat B; 798ba1e511SMatthew Knepley #ifndef PETSC_USE_DYNAMIC_LIBRARIES 80dfbe8321SBarry Smith PetscErrorCode ierr; 818ba1e511SMatthew Knepley #endif 82273d9f13SBarry Smith 83273d9f13SBarry Smith PetscFunctionBegin; 844482741eSBarry Smith PetscValidPointer(A,6); 8577431f27SBarry Smith if (M > 0 && m > M) SETERRQ2(PETSC_ERR_ARG_INCOMP,"Local column size %D cannot be larger than global column size %D",m,M); 8677431f27SBarry Smith if (N > 0 && n > N) SETERRQ2(PETSC_ERR_ARG_INCOMP,"Local row size %D cannot be larger than global row size %D",n,N); 8797f1f81fSBarry Smith 888ba1e511SMatthew Knepley *A = PETSC_NULL; 898ba1e511SMatthew Knepley #ifndef PETSC_USE_DYNAMIC_LIBRARIES 908ba1e511SMatthew Knepley ierr = MatInitializePackage(PETSC_NULL);CHKERRQ(ierr); 918ba1e511SMatthew Knepley #endif 928ba1e511SMatthew Knepley 93273d9f13SBarry Smith PetscHeaderCreate(B,_p_Mat,struct _MatOps,MAT_COOKIE,0,"Mat",comm,MatDestroy,MatView); 94b0a32e0cSBarry Smith PetscLogObjectCreate(B); 95273d9f13SBarry Smith 96273d9f13SBarry Smith B->m = m; 97273d9f13SBarry Smith B->n = n; 98273d9f13SBarry Smith B->M = M; 99273d9f13SBarry Smith B->N = N; 100521d7252SBarry Smith B->bs = 1; 101273d9f13SBarry Smith B->preallocated = PETSC_FALSE; 10235d8aa7fSBarry Smith B->bops->publish = MatPublish_Base; 103273d9f13SBarry Smith *A = B; 104273d9f13SBarry Smith PetscFunctionReturn(0); 105273d9f13SBarry Smith } 106273d9f13SBarry Smith 1074a2ae208SSatish Balay #undef __FUNCT__ 1084a2ae208SSatish Balay #define __FUNCT__ "MatSetFromOptions" 109273d9f13SBarry Smith /*@C 110273d9f13SBarry Smith MatSetFromOptions - Creates a matrix where the type is determined 111273d9f13SBarry Smith from the options database. Generates a parallel MPI matrix if the 112273d9f13SBarry Smith communicator has more than one processor. The default matrix type is 1137e5f4302SBarry Smith AIJ, using the routines MatCreateSeqAIJ() and MatCreateMPIAIJ() if 1147e5f4302SBarry Smith you do not select a type in the options database. 115273d9f13SBarry Smith 116273d9f13SBarry Smith Collective on Mat 117273d9f13SBarry Smith 118273d9f13SBarry Smith Input Parameter: 119273d9f13SBarry Smith . A - the matrix 120273d9f13SBarry Smith 121273d9f13SBarry Smith Options Database Keys: 122273d9f13SBarry Smith + -mat_type seqaij - AIJ type, uses MatCreateSeqAIJ() 123273d9f13SBarry Smith . -mat_type mpiaij - AIJ type, uses MatCreateMPIAIJ() 124273d9f13SBarry Smith . -mat_type seqbdiag - block diagonal type, uses MatCreateSeqBDiag() 125273d9f13SBarry Smith . -mat_type mpibdiag - block diagonal type, uses MatCreateMPIBDiag() 126273d9f13SBarry Smith . -mat_type mpirowbs - rowbs type, uses MatCreateMPIRowbs() 127273d9f13SBarry Smith . -mat_type seqdense - dense type, uses MatCreateSeqDense() 128273d9f13SBarry Smith . -mat_type mpidense - dense type, uses MatCreateMPIDense() 129273d9f13SBarry Smith . -mat_type seqbaij - block AIJ type, uses MatCreateSeqBAIJ() 130273d9f13SBarry Smith - -mat_type mpibaij - block AIJ type, uses MatCreateMPIBAIJ() 131273d9f13SBarry Smith 132273d9f13SBarry Smith Even More Options Database Keys: 133273d9f13SBarry Smith See the manpages for particular formats (e.g., MatCreateSeqAIJ()) 134273d9f13SBarry Smith for additional format-specific options. 135bd9ce289SLois Curfman McInnes 1361d69843bSLois Curfman McInnes Level: beginner 1371d69843bSLois Curfman McInnes 138dc401e71SLois Curfman McInnes .keywords: matrix, create 139e0b365e2SLois Curfman McInnes 140fafbff53SBarry Smith .seealso: MatCreateSeqAIJ((), MatCreateMPIAIJ(), 141fafbff53SBarry Smith MatCreateSeqBDiag(),MatCreateMPIBDiag(), 14239ddd567SLois Curfman McInnes MatCreateSeqDense(), MatCreateMPIDense(), 143a209d233SLois Curfman McInnes MatCreateMPIRowbs(), MatCreateSeqBAIJ(), MatCreateMPIBAIJ(), 144a209d233SLois Curfman McInnes MatCreateSeqSBAIJ(), MatCreateMPISBAIJ(), 145273d9f13SBarry Smith MatConvert() 1467807a1faSBarry Smith @*/ 147dfbe8321SBarry Smith PetscErrorCode MatSetFromOptions(Mat B) 1487807a1faSBarry Smith { 149dfbe8321SBarry Smith PetscErrorCode ierr; 1502d156eb4SBarry Smith PetscMPIInt size; 151273d9f13SBarry Smith char mtype[256]; 152273d9f13SBarry Smith PetscTruth flg; 153dbb450caSBarry Smith 1543a40ed3dSBarry Smith PetscFunctionBegin; 155b0a32e0cSBarry Smith ierr = PetscOptionsGetString(B->prefix,"-mat_type",mtype,256,&flg);CHKERRQ(ierr); 156273d9f13SBarry Smith if (flg) { 157273d9f13SBarry Smith ierr = MatSetType(B,mtype);CHKERRQ(ierr); 158273d9f13SBarry Smith } 159273d9f13SBarry Smith if (!B->type_name) { 160273d9f13SBarry Smith ierr = MPI_Comm_size(B->comm,&size);CHKERRQ(ierr); 1611d9a38edSKris Buschelman ierr = MatSetType(B,MATAIJ);CHKERRQ(ierr); 162dfa27b74SSatish Balay } 1633a40ed3dSBarry Smith PetscFunctionReturn(0); 1647807a1faSBarry Smith } 1657807a1faSBarry Smith 1664a2ae208SSatish Balay #undef __FUNCT__ 1674a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation" 168273d9f13SBarry Smith /*@C 169273d9f13SBarry Smith MatSetUpPreallocation 170dae03382SLois Curfman McInnes 171273d9f13SBarry Smith Collective on Mat 172dae03382SLois Curfman McInnes 173273d9f13SBarry Smith Input Parameter: 174273d9f13SBarry Smith . A - the matrix 175d5d45c9bSBarry Smith 176273d9f13SBarry Smith Level: beginner 177d5d45c9bSBarry Smith 178273d9f13SBarry Smith .keywords: matrix, create 179273d9f13SBarry Smith 180273d9f13SBarry Smith .seealso: MatCreateSeqAIJ((), MatCreateMPIAIJ(), 181273d9f13SBarry Smith MatCreateSeqBDiag(),MatCreateMPIBDiag(), 182273d9f13SBarry Smith MatCreateSeqDense(), MatCreateMPIDense(), 183273d9f13SBarry Smith MatCreateMPIRowbs(), MatCreateSeqBAIJ(), MatCreateMPIBAIJ(), 184273d9f13SBarry Smith MatCreateSeqSBAIJ(), MatCreateMPISBAIJ(), 185273d9f13SBarry Smith MatConvert() 186273d9f13SBarry Smith @*/ 187dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation(Mat B) 188273d9f13SBarry Smith { 189dfbe8321SBarry Smith PetscErrorCode ierr; 190273d9f13SBarry Smith 191273d9f13SBarry Smith PetscFunctionBegin; 192273d9f13SBarry Smith if (B->ops->setuppreallocation) { 1938ba1e511SMatthew Knepley PetscLogInfo(B,"MatSetUpPreallocation: Warning not preallocating matrix storage"); 194273d9f13SBarry Smith ierr = (*B->ops->setuppreallocation)(B);CHKERRQ(ierr); 195273d9f13SBarry Smith B->ops->setuppreallocation = 0; 196273d9f13SBarry Smith B->preallocated = PETSC_TRUE; 197273d9f13SBarry Smith } 198273d9f13SBarry Smith PetscFunctionReturn(0); 199273d9f13SBarry Smith } 200273d9f13SBarry Smith 201273d9f13SBarry Smith /* 202273d9f13SBarry Smith Copies from Cs header to A 203273d9f13SBarry Smith */ 2044a2ae208SSatish Balay #undef __FUNCT__ 2054a2ae208SSatish Balay #define __FUNCT__ "MatHeaderCopy" 206dfbe8321SBarry Smith PetscErrorCode MatHeaderCopy(Mat A,Mat C) 207273d9f13SBarry Smith { 208dfbe8321SBarry Smith PetscErrorCode ierr; 209*d44834fbSBarry Smith PetscInt refct; 210273d9f13SBarry Smith PetscOps *Abops; 211273d9f13SBarry Smith MatOps Aops; 212273d9f13SBarry Smith char *mtype,*mname; 213273d9f13SBarry Smith 214273d9f13SBarry Smith PetscFunctionBegin; 215273d9f13SBarry Smith /* free all the interior data structures from mat */ 216273d9f13SBarry Smith ierr = (*A->ops->destroy)(A);CHKERRQ(ierr); 217273d9f13SBarry Smith 2188a124369SBarry Smith ierr = PetscMapDestroy(A->rmap);CHKERRQ(ierr); 2198a124369SBarry Smith ierr = PetscMapDestroy(A->cmap);CHKERRQ(ierr); 220273d9f13SBarry Smith 221273d9f13SBarry Smith /* save the parts of A we need */ 222273d9f13SBarry Smith Abops = A->bops; 223273d9f13SBarry Smith Aops = A->ops; 224273d9f13SBarry Smith refct = A->refct; 225273d9f13SBarry Smith mtype = A->type_name; 226273d9f13SBarry Smith mname = A->name; 227273d9f13SBarry Smith 228273d9f13SBarry Smith /* copy C over to A */ 229273d9f13SBarry Smith ierr = PetscMemcpy(A,C,sizeof(struct _p_Mat));CHKERRQ(ierr); 230273d9f13SBarry Smith 231273d9f13SBarry Smith /* return the parts of A we saved */ 232273d9f13SBarry Smith A->bops = Abops; 233273d9f13SBarry Smith A->ops = Aops; 234273d9f13SBarry Smith A->qlist = 0; 235273d9f13SBarry Smith A->refct = refct; 236273d9f13SBarry Smith A->type_name = mtype; 237273d9f13SBarry Smith A->name = mname; 238273d9f13SBarry Smith 2390cc1bc1eSSatish Balay PetscLogObjectDestroy(C); 240273d9f13SBarry Smith PetscHeaderDestroy(C); 241273d9f13SBarry Smith PetscFunctionReturn(0); 242273d9f13SBarry Smith } 243