173f4d377SMatthew Knepley /*$Id: gcreate.c,v 1.131 2001/07/20 21:22:13 bsmith Exp $*/ 27807a1faSBarry Smith 3273d9f13SBarry Smith #include "src/mat/matimpl.h" /*I "petscmat.h" I*/ 4325e03aeSBarry Smith #include "petscsys.h" 57807a1faSBarry Smith 64a2ae208SSatish Balay #undef __FUNCT__ 74a2ae208SSatish Balay #define __FUNCT__ "MatPublish_Base" 835d8aa7fSBarry Smith static int MatPublish_Base(PetscObject obj) 935d8aa7fSBarry Smith { 1035d8aa7fSBarry Smith #if defined(PETSC_HAVE_AMS) 1135d8aa7fSBarry Smith Mat mat = (Mat)obj; 1235d8aa7fSBarry Smith int ierr; 1335d8aa7fSBarry Smith #endif 1435d8aa7fSBarry Smith 1535d8aa7fSBarry Smith PetscFunctionBegin; 1635d8aa7fSBarry Smith #if defined(PETSC_HAVE_AMS) 1735d8aa7fSBarry Smith /* if it is already published then return */ 1835d8aa7fSBarry Smith if (mat->amem >=0) PetscFunctionReturn(0); 1935d8aa7fSBarry Smith 2035d8aa7fSBarry Smith ierr = PetscObjectPublishBaseBegin(obj);CHKERRQ(ierr); 2135d8aa7fSBarry Smith ierr = AMS_Memory_add_field((AMS_Memory)mat->amem,"globalsizes",&mat->M,2,AMS_INT,AMS_READ, 2235d8aa7fSBarry Smith AMS_COMMON,AMS_REDUCT_UNDEF);CHKERRQ(ierr); 2335d8aa7fSBarry Smith ierr = AMS_Memory_add_field((AMS_Memory)mat->amem,"localsizes",&mat->m,2,AMS_INT,AMS_READ, 2435d8aa7fSBarry Smith AMS_DISTRIBUTED,AMS_REDUCT_UNDEF);CHKERRQ(ierr); 2535d8aa7fSBarry Smith ierr = PetscObjectPublishBaseEnd(obj);CHKERRQ(ierr); 2635d8aa7fSBarry Smith #endif 2735d8aa7fSBarry Smith 2835d8aa7fSBarry Smith PetscFunctionReturn(0); 2935d8aa7fSBarry Smith } 3035d8aa7fSBarry Smith 3135d8aa7fSBarry Smith 324a2ae208SSatish Balay #undef __FUNCT__ 334a2ae208SSatish Balay #define __FUNCT__ "MatCreate" 34325ab940SBarry Smith /*@C 3569dd0797SLois Curfman McInnes MatCreate - Creates a matrix where the type is determined 367e5f4302SBarry Smith from either a call to MatSetType() or from the options database 377e5f4302SBarry Smith with a call to MatSetFromOptions(). The default matrix type is 387e5f4302SBarry Smith AIJ, using the routines MatCreateSeqAIJ() or MatCreateMPIAIJ() 397e5f4302SBarry Smith if you do not set a type in the options database. If you never 407e5f4302SBarry Smith call MatSetType() or MatSetFromOptions() it will generate an 41*f8ab6608SSatish Balay error when you try to use the matrix. 4283e1b59cSLois Curfman McInnes 43cb13003dSBarry Smith Collective on MPI_Comm 44cb13003dSBarry Smith 457807a1faSBarry Smith Input Parameters: 4682b900a8SBarry Smith + m - number of local rows (or PETSC_DECIDE) 4782b900a8SBarry Smith . n - number of local columns (or PETSC_DECIDE) 4882b900a8SBarry Smith . M - number of global rows (or PETSC_DETERMINE) 4982b900a8SBarry Smith . N - number of global columns (or PETSC_DETERMINE) 50cb13003dSBarry Smith - comm - MPI communicator 517807a1faSBarry Smith 527807a1faSBarry Smith Output Parameter: 53dc401e71SLois Curfman McInnes . A - the matrix 54e0b365e2SLois Curfman McInnes 55273d9f13SBarry Smith Options Database Keys: 56273d9f13SBarry Smith + -mat_type seqaij - AIJ type, uses MatCreateSeqAIJ() 57273d9f13SBarry Smith . -mat_type mpiaij - AIJ type, uses MatCreateMPIAIJ() 58273d9f13SBarry Smith . -mat_type seqbdiag - block diagonal type, uses MatCreateSeqBDiag() 59273d9f13SBarry Smith . -mat_type mpibdiag - block diagonal type, uses MatCreateMPIBDiag() 60273d9f13SBarry Smith . -mat_type mpirowbs - rowbs type, uses MatCreateMPIRowbs() 61273d9f13SBarry Smith . -mat_type seqdense - dense type, uses MatCreateSeqDense() 62273d9f13SBarry Smith . -mat_type mpidense - dense type, uses MatCreateMPIDense() 63273d9f13SBarry Smith . -mat_type seqbaij - block AIJ type, uses MatCreateSeqBAIJ() 64273d9f13SBarry Smith - -mat_type mpibaij - block AIJ type, uses MatCreateMPIBAIJ() 65e0b365e2SLois Curfman McInnes 6683e1b59cSLois Curfman McInnes Even More Options Database Keys: 6783e1b59cSLois Curfman McInnes See the manpages for particular formats (e.g., MatCreateSeqAIJ()) 6883e1b59cSLois Curfman McInnes for additional format-specific options. 69e0b365e2SLois Curfman McInnes 70bd9ce289SLois Curfman McInnes Notes: 71ec6e0d80SSatish Balay If PETSC_DECIDE is not used for the arguments 'm' and 'n', then the 72ec6e0d80SSatish Balay user must ensure that they are chosen to be compatible with the 73ec6e0d80SSatish Balay vectors. To do this, one first considers the matrix-vector product 74ec6e0d80SSatish Balay 'y = A x'. The 'm' that is used in the above routine must match the 75ec6e0d80SSatish Balay local size used in the vector creation routine VecCreateMPI() for 'y'. 76ec6e0d80SSatish Balay Likewise, the 'n' used must match that used as the local size in 77ec6e0d80SSatish Balay VecCreateMPI() for 'x'. 78ec6e0d80SSatish Balay 79273d9f13SBarry Smith Level: beginner 80273d9f13SBarry Smith 81273d9f13SBarry Smith .keywords: matrix, create 82273d9f13SBarry Smith 83273d9f13SBarry Smith .seealso: MatCreateSeqAIJ((), MatCreateMPIAIJ(), 84273d9f13SBarry Smith MatCreateSeqBDiag(),MatCreateMPIBDiag(), 85273d9f13SBarry Smith MatCreateSeqDense(), MatCreateMPIDense(), 86273d9f13SBarry Smith MatCreateMPIRowbs(), MatCreateSeqBAIJ(), MatCreateMPIBAIJ(), 87273d9f13SBarry Smith MatCreateSeqSBAIJ(), MatCreateMPISBAIJ(), 88273d9f13SBarry Smith MatConvert() 89273d9f13SBarry Smith @*/ 90273d9f13SBarry Smith int MatCreate(MPI_Comm comm,int m,int n,int M,int N,Mat *A) 91273d9f13SBarry Smith { 92273d9f13SBarry Smith Mat B; 938ba1e511SMatthew Knepley #ifndef PETSC_USE_DYNAMIC_LIBRARIES 948ba1e511SMatthew Knepley int ierr; 958ba1e511SMatthew Knepley #endif 96273d9f13SBarry Smith 97273d9f13SBarry Smith PetscFunctionBegin; 988ba1e511SMatthew Knepley PetscValidPointer(A); 998ba1e511SMatthew Knepley *A = PETSC_NULL; 1008ba1e511SMatthew Knepley #ifndef PETSC_USE_DYNAMIC_LIBRARIES 1018ba1e511SMatthew Knepley ierr = MatInitializePackage(PETSC_NULL); CHKERRQ(ierr); 1028ba1e511SMatthew Knepley #endif 1038ba1e511SMatthew Knepley 104273d9f13SBarry Smith PetscHeaderCreate(B,_p_Mat,struct _MatOps,MAT_COOKIE,0,"Mat",comm,MatDestroy,MatView); 105b0a32e0cSBarry Smith PetscLogObjectCreate(B); 106273d9f13SBarry Smith 107273d9f13SBarry Smith B->m = m; 108273d9f13SBarry Smith B->n = n; 109273d9f13SBarry Smith B->M = M; 110273d9f13SBarry Smith B->N = N; 111273d9f13SBarry Smith 112273d9f13SBarry Smith B->preallocated = PETSC_FALSE; 11335d8aa7fSBarry Smith B->bops->publish = MatPublish_Base; 114273d9f13SBarry Smith *A = B; 115273d9f13SBarry Smith PetscFunctionReturn(0); 116273d9f13SBarry Smith } 117273d9f13SBarry Smith 1184a2ae208SSatish Balay #undef __FUNCT__ 1194a2ae208SSatish Balay #define __FUNCT__ "MatSetFromOptions" 120273d9f13SBarry Smith /*@C 121273d9f13SBarry Smith MatSetFromOptions - Creates a matrix where the type is determined 122273d9f13SBarry Smith from the options database. Generates a parallel MPI matrix if the 123273d9f13SBarry Smith communicator has more than one processor. The default matrix type is 1247e5f4302SBarry Smith AIJ, using the routines MatCreateSeqAIJ() and MatCreateMPIAIJ() if 1257e5f4302SBarry Smith you do not select a type in the options database. 126273d9f13SBarry Smith 127273d9f13SBarry Smith Collective on Mat 128273d9f13SBarry Smith 129273d9f13SBarry Smith Input Parameter: 130273d9f13SBarry Smith . A - the matrix 131273d9f13SBarry Smith 132273d9f13SBarry Smith Options Database Keys: 133273d9f13SBarry Smith + -mat_type seqaij - AIJ type, uses MatCreateSeqAIJ() 134273d9f13SBarry Smith . -mat_type mpiaij - AIJ type, uses MatCreateMPIAIJ() 135273d9f13SBarry Smith . -mat_type seqbdiag - block diagonal type, uses MatCreateSeqBDiag() 136273d9f13SBarry Smith . -mat_type mpibdiag - block diagonal type, uses MatCreateMPIBDiag() 137273d9f13SBarry Smith . -mat_type mpirowbs - rowbs type, uses MatCreateMPIRowbs() 138273d9f13SBarry Smith . -mat_type seqdense - dense type, uses MatCreateSeqDense() 139273d9f13SBarry Smith . -mat_type mpidense - dense type, uses MatCreateMPIDense() 140273d9f13SBarry Smith . -mat_type seqbaij - block AIJ type, uses MatCreateSeqBAIJ() 141273d9f13SBarry Smith - -mat_type mpibaij - block AIJ type, uses MatCreateMPIBAIJ() 142273d9f13SBarry Smith 143273d9f13SBarry Smith Even More Options Database Keys: 144273d9f13SBarry Smith See the manpages for particular formats (e.g., MatCreateSeqAIJ()) 145273d9f13SBarry Smith for additional format-specific options. 146bd9ce289SLois Curfman McInnes 1471d69843bSLois Curfman McInnes Level: beginner 1481d69843bSLois Curfman McInnes 149dc401e71SLois Curfman McInnes .keywords: matrix, create 150e0b365e2SLois Curfman McInnes 151fafbff53SBarry Smith .seealso: MatCreateSeqAIJ((), MatCreateMPIAIJ(), 152fafbff53SBarry Smith MatCreateSeqBDiag(),MatCreateMPIBDiag(), 15339ddd567SLois Curfman McInnes MatCreateSeqDense(), MatCreateMPIDense(), 154a209d233SLois Curfman McInnes MatCreateMPIRowbs(), MatCreateSeqBAIJ(), MatCreateMPIBAIJ(), 155a209d233SLois Curfman McInnes MatCreateSeqSBAIJ(), MatCreateMPISBAIJ(), 156273d9f13SBarry Smith MatConvert() 1577807a1faSBarry Smith @*/ 158273d9f13SBarry Smith int MatSetFromOptions(Mat B) 1597807a1faSBarry Smith { 160273d9f13SBarry Smith int ierr,size; 161273d9f13SBarry Smith char mtype[256]; 162273d9f13SBarry Smith PetscTruth flg; 163dbb450caSBarry Smith 1643a40ed3dSBarry Smith PetscFunctionBegin; 165b0a32e0cSBarry Smith ierr = PetscOptionsGetString(B->prefix,"-mat_type",mtype,256,&flg);CHKERRQ(ierr); 166273d9f13SBarry Smith if (flg) { 167273d9f13SBarry Smith ierr = MatSetType(B,mtype);CHKERRQ(ierr); 168273d9f13SBarry Smith } 169273d9f13SBarry Smith if (!B->type_name) { 170273d9f13SBarry Smith ierr = MPI_Comm_size(B->comm,&size);CHKERRQ(ierr); 171273d9f13SBarry Smith if (size == 1) { 172273d9f13SBarry Smith ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr); 173273d9f13SBarry Smith } else { 174273d9f13SBarry Smith ierr = MatSetType(B,MATMPIAIJ);CHKERRQ(ierr); 175273d9f13SBarry Smith } 176dfa27b74SSatish Balay } 177c1ef491bSBarry Smith #if defined(__cplusplus) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_MATSINGLE) && defined(PETSC_HAVE_CXX_NAMESPACE) 17824a595ddSBarry Smith ierr = MatESISetFromOptions(B);CHKERRQ(ierr); 17924a595ddSBarry Smith #endif 1803a40ed3dSBarry Smith PetscFunctionReturn(0); 1817807a1faSBarry Smith } 1827807a1faSBarry Smith 1834a2ae208SSatish Balay #undef __FUNCT__ 1844a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation" 185273d9f13SBarry Smith /*@C 186273d9f13SBarry Smith MatSetUpPreallocation 187dae03382SLois Curfman McInnes 188273d9f13SBarry Smith Collective on Mat 189dae03382SLois Curfman McInnes 190273d9f13SBarry Smith Input Parameter: 191273d9f13SBarry Smith . A - the matrix 192d5d45c9bSBarry Smith 193273d9f13SBarry Smith Level: beginner 194d5d45c9bSBarry Smith 195273d9f13SBarry Smith .keywords: matrix, create 196273d9f13SBarry Smith 197273d9f13SBarry Smith .seealso: MatCreateSeqAIJ((), MatCreateMPIAIJ(), 198273d9f13SBarry Smith MatCreateSeqBDiag(),MatCreateMPIBDiag(), 199273d9f13SBarry Smith MatCreateSeqDense(), MatCreateMPIDense(), 200273d9f13SBarry Smith MatCreateMPIRowbs(), MatCreateSeqBAIJ(), MatCreateMPIBAIJ(), 201273d9f13SBarry Smith MatCreateSeqSBAIJ(), MatCreateMPISBAIJ(), 202273d9f13SBarry Smith MatConvert() 203273d9f13SBarry Smith @*/ 204273d9f13SBarry Smith int MatSetUpPreallocation(Mat B) 205273d9f13SBarry Smith { 206273d9f13SBarry Smith int ierr; 207273d9f13SBarry Smith 208273d9f13SBarry Smith PetscFunctionBegin; 209273d9f13SBarry Smith if (B->ops->setuppreallocation) { 2108ba1e511SMatthew Knepley PetscLogInfo(B,"MatSetUpPreallocation: Warning not preallocating matrix storage"); 211273d9f13SBarry Smith ierr = (*B->ops->setuppreallocation)(B);CHKERRQ(ierr); 212273d9f13SBarry Smith B->ops->setuppreallocation = 0; 213273d9f13SBarry Smith B->preallocated = PETSC_TRUE; 214273d9f13SBarry Smith } 215273d9f13SBarry Smith PetscFunctionReturn(0); 216273d9f13SBarry Smith } 217273d9f13SBarry Smith 218273d9f13SBarry Smith /* 219273d9f13SBarry Smith Copies from Cs header to A 220273d9f13SBarry Smith */ 2214a2ae208SSatish Balay #undef __FUNCT__ 2224a2ae208SSatish Balay #define __FUNCT__ "MatHeaderCopy" 223273d9f13SBarry Smith int MatHeaderCopy(Mat A,Mat C) 224273d9f13SBarry Smith { 225273d9f13SBarry Smith int ierr,refct; 226273d9f13SBarry Smith PetscOps *Abops; 227273d9f13SBarry Smith MatOps Aops; 228273d9f13SBarry Smith char *mtype,*mname; 229273d9f13SBarry Smith 230273d9f13SBarry Smith PetscFunctionBegin; 231273d9f13SBarry Smith /* free all the interior data structures from mat */ 232273d9f13SBarry Smith ierr = (*A->ops->destroy)(A);CHKERRQ(ierr); 233273d9f13SBarry Smith 2348a124369SBarry Smith ierr = PetscMapDestroy(A->rmap);CHKERRQ(ierr); 2358a124369SBarry Smith ierr = PetscMapDestroy(A->cmap);CHKERRQ(ierr); 236273d9f13SBarry Smith 237273d9f13SBarry Smith /* save the parts of A we need */ 238273d9f13SBarry Smith Abops = A->bops; 239273d9f13SBarry Smith Aops = A->ops; 240273d9f13SBarry Smith refct = A->refct; 241273d9f13SBarry Smith mtype = A->type_name; 242273d9f13SBarry Smith mname = A->name; 243273d9f13SBarry Smith 244273d9f13SBarry Smith /* copy C over to A */ 245273d9f13SBarry Smith ierr = PetscMemcpy(A,C,sizeof(struct _p_Mat));CHKERRQ(ierr); 246273d9f13SBarry Smith 247273d9f13SBarry Smith /* return the parts of A we saved */ 248273d9f13SBarry Smith A->bops = Abops; 249273d9f13SBarry Smith A->ops = Aops; 250273d9f13SBarry Smith A->qlist = 0; 251273d9f13SBarry Smith A->refct = refct; 252273d9f13SBarry Smith A->type_name = mtype; 253273d9f13SBarry Smith A->name = mname; 254273d9f13SBarry Smith 2550cc1bc1eSSatish Balay PetscLogObjectDestroy(C); 256273d9f13SBarry Smith PetscHeaderDestroy(C); 257273d9f13SBarry Smith PetscFunctionReturn(0); 258273d9f13SBarry Smith } 259