1*c4762a1bSJed Brown static char help[] = "Poisson Problem in 2d and 3d with simplicial finite elements.\n\ 2*c4762a1bSJed Brown We solve the Poisson problem in a rectangular\n\ 3*c4762a1bSJed Brown domain, using a parallel unstructured mesh (DMPLEX) to discretize it.\n\ 4*c4762a1bSJed Brown This example supports discretized auxiliary fields (conductivity) as well as\n\ 5*c4762a1bSJed Brown multilevel nonlinear solvers.\n\n\n"; 6*c4762a1bSJed Brown 7*c4762a1bSJed Brown /* 8*c4762a1bSJed Brown A visualization of the adaptation can be accomplished using: 9*c4762a1bSJed Brown 10*c4762a1bSJed Brown -dm_adapt_view hdf5:$PWD/adapt.h5 -sol_adapt_view hdf5:$PWD/adapt.h5::append -dm_adapt_pre_view hdf5:$PWD/orig.h5 -sol_adapt_pre_view hdf5:$PWD/orig.h5::append 11*c4762a1bSJed Brown 12*c4762a1bSJed Brown Information on refinement: 13*c4762a1bSJed Brown 14*c4762a1bSJed Brown -info -info_exclude null,sys,vec,is,mat,ksp,snes,ts 15*c4762a1bSJed Brown */ 16*c4762a1bSJed Brown 17*c4762a1bSJed Brown #include <petscdmplex.h> 18*c4762a1bSJed Brown #include <petscdmadaptor.h> 19*c4762a1bSJed Brown #include <petscsnes.h> 20*c4762a1bSJed Brown #include <petscds.h> 21*c4762a1bSJed Brown #include <petscviewerhdf5.h> 22*c4762a1bSJed Brown 23*c4762a1bSJed Brown typedef enum {NEUMANN, DIRICHLET, NONE} BCType; 24*c4762a1bSJed Brown typedef enum {RUN_FULL, RUN_EXACT, RUN_TEST, RUN_PERF} RunType; 25*c4762a1bSJed Brown typedef enum {COEFF_NONE, COEFF_ANALYTIC, COEFF_FIELD, COEFF_NONLINEAR, COEFF_CIRCLE, COEFF_CROSS} CoeffType; 26*c4762a1bSJed Brown 27*c4762a1bSJed Brown typedef struct { 28*c4762a1bSJed Brown PetscInt debug; /* The debugging level */ 29*c4762a1bSJed Brown RunType runType; /* Whether to run tests, or solve the full problem */ 30*c4762a1bSJed Brown PetscBool jacobianMF; /* Whether to calculate the Jacobian action on the fly */ 31*c4762a1bSJed Brown PetscLogEvent createMeshEvent; 32*c4762a1bSJed Brown PetscBool showInitial, showSolution, restart, quiet, nonzInit; 33*c4762a1bSJed Brown /* Domain and mesh definition */ 34*c4762a1bSJed Brown PetscInt dim; /* The topological mesh dimension */ 35*c4762a1bSJed Brown DMBoundaryType periodicity[3]; /* The domain periodicity */ 36*c4762a1bSJed Brown PetscInt cells[3]; /* The initial domain division */ 37*c4762a1bSJed Brown char filename[2048]; /* The optional mesh file */ 38*c4762a1bSJed Brown PetscBool interpolate; /* Generate intermediate mesh elements */ 39*c4762a1bSJed Brown PetscReal refinementLimit; /* The largest allowable cell volume */ 40*c4762a1bSJed Brown PetscBool viewHierarchy; /* Whether to view the hierarchy */ 41*c4762a1bSJed Brown PetscBool simplex; /* Simplicial mesh */ 42*c4762a1bSJed Brown /* Problem definition */ 43*c4762a1bSJed Brown BCType bcType; 44*c4762a1bSJed Brown CoeffType variableCoefficient; 45*c4762a1bSJed Brown PetscErrorCode (**exactFuncs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx); 46*c4762a1bSJed Brown PetscBool fieldBC; 47*c4762a1bSJed Brown void (**exactFields)(PetscInt, PetscInt, PetscInt, 48*c4762a1bSJed Brown const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 49*c4762a1bSJed Brown const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 50*c4762a1bSJed Brown PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]); 51*c4762a1bSJed Brown PetscBool bdIntegral; /* Compute the integral of the solution on the boundary */ 52*c4762a1bSJed Brown /* Solver */ 53*c4762a1bSJed Brown PC pcmg; /* This is needed for error monitoring */ 54*c4762a1bSJed Brown PetscBool checkksp; /* Whether to check the KSPSolve for runType == RUN_TEST */ 55*c4762a1bSJed Brown } AppCtx; 56*c4762a1bSJed Brown 57*c4762a1bSJed Brown static PetscErrorCode zero(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx) 58*c4762a1bSJed Brown { 59*c4762a1bSJed Brown u[0] = 0.0; 60*c4762a1bSJed Brown return 0; 61*c4762a1bSJed Brown } 62*c4762a1bSJed Brown 63*c4762a1bSJed Brown static PetscErrorCode ecks(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx) 64*c4762a1bSJed Brown { 65*c4762a1bSJed Brown u[0] = x[0]; 66*c4762a1bSJed Brown return 0; 67*c4762a1bSJed Brown } 68*c4762a1bSJed Brown 69*c4762a1bSJed Brown /* 70*c4762a1bSJed Brown In 2D for Dirichlet conditions, we use exact solution: 71*c4762a1bSJed Brown 72*c4762a1bSJed Brown u = x^2 + y^2 73*c4762a1bSJed Brown f = 4 74*c4762a1bSJed Brown 75*c4762a1bSJed Brown so that 76*c4762a1bSJed Brown 77*c4762a1bSJed Brown -\Delta u + f = -4 + 4 = 0 78*c4762a1bSJed Brown 79*c4762a1bSJed Brown For Neumann conditions, we have 80*c4762a1bSJed Brown 81*c4762a1bSJed Brown -\nabla u \cdot -\hat y |_{y=0} = (2y)|_{y=0} = 0 (bottom) 82*c4762a1bSJed Brown -\nabla u \cdot \hat y |_{y=1} = -(2y)|_{y=1} = -2 (top) 83*c4762a1bSJed Brown -\nabla u \cdot -\hat x |_{x=0} = (2x)|_{x=0} = 0 (left) 84*c4762a1bSJed Brown -\nabla u \cdot \hat x |_{x=1} = -(2x)|_{x=1} = -2 (right) 85*c4762a1bSJed Brown 86*c4762a1bSJed Brown Which we can express as 87*c4762a1bSJed Brown 88*c4762a1bSJed Brown \nabla u \cdot \hat n|_\Gamma = {2 x, 2 y} \cdot \hat n = 2 (x + y) 89*c4762a1bSJed Brown 90*c4762a1bSJed Brown The boundary integral of this solution is (assuming we are not orienting the edges) 91*c4762a1bSJed Brown 92*c4762a1bSJed Brown \int^1_0 x^2 dx + \int^1_0 (1 + y^2) dy + \int^1_0 (x^2 + 1) dx + \int^1_0 y^2 dy = 1/3 + 4/3 + 4/3 + 1/3 = 3 1/3 93*c4762a1bSJed Brown */ 94*c4762a1bSJed Brown static PetscErrorCode quadratic_u_2d(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx) 95*c4762a1bSJed Brown { 96*c4762a1bSJed Brown *u = x[0]*x[0] + x[1]*x[1]; 97*c4762a1bSJed Brown return 0; 98*c4762a1bSJed Brown } 99*c4762a1bSJed Brown 100*c4762a1bSJed Brown static void quadratic_u_field_2d(PetscInt dim, PetscInt Nf, PetscInt NfAux, 101*c4762a1bSJed Brown const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 102*c4762a1bSJed Brown const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 103*c4762a1bSJed Brown PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar uexact[]) 104*c4762a1bSJed Brown { 105*c4762a1bSJed Brown uexact[0] = a[0]; 106*c4762a1bSJed Brown } 107*c4762a1bSJed Brown 108*c4762a1bSJed Brown static PetscErrorCode circle_u_2d(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx) 109*c4762a1bSJed Brown { 110*c4762a1bSJed Brown const PetscReal alpha = 500.; 111*c4762a1bSJed Brown const PetscReal radius2 = PetscSqr(0.15); 112*c4762a1bSJed Brown const PetscReal r2 = PetscSqr(x[0] - 0.5) + PetscSqr(x[1] - 0.5); 113*c4762a1bSJed Brown const PetscReal xi = alpha*(radius2 - r2); 114*c4762a1bSJed Brown 115*c4762a1bSJed Brown *u = PetscTanhScalar(xi) + 1.0; 116*c4762a1bSJed Brown return 0; 117*c4762a1bSJed Brown } 118*c4762a1bSJed Brown 119*c4762a1bSJed Brown static PetscErrorCode cross_u_2d(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx) 120*c4762a1bSJed Brown { 121*c4762a1bSJed Brown const PetscReal alpha = 50*4; 122*c4762a1bSJed Brown const PetscReal xy = (x[0]-0.5)*(x[1]-0.5); 123*c4762a1bSJed Brown 124*c4762a1bSJed Brown *u = PetscSinReal(alpha*xy) * (alpha*PetscAbsReal(xy) < 2*PETSC_PI ? 1 : 0.01); 125*c4762a1bSJed Brown return 0; 126*c4762a1bSJed Brown } 127*c4762a1bSJed Brown 128*c4762a1bSJed Brown static void f0_u(PetscInt dim, PetscInt Nf, PetscInt NfAux, 129*c4762a1bSJed Brown const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 130*c4762a1bSJed Brown const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 131*c4762a1bSJed Brown PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[]) 132*c4762a1bSJed Brown { 133*c4762a1bSJed Brown f0[0] = 4.0; 134*c4762a1bSJed Brown } 135*c4762a1bSJed Brown 136*c4762a1bSJed Brown static void f0_circle_u(PetscInt dim, PetscInt Nf, PetscInt NfAux, 137*c4762a1bSJed Brown const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 138*c4762a1bSJed Brown const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 139*c4762a1bSJed Brown PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[]) 140*c4762a1bSJed Brown { 141*c4762a1bSJed Brown const PetscReal alpha = 500.; 142*c4762a1bSJed Brown const PetscReal radius2 = PetscSqr(0.15); 143*c4762a1bSJed Brown const PetscReal r2 = PetscSqr(x[0] - 0.5) + PetscSqr(x[1] - 0.5); 144*c4762a1bSJed Brown const PetscReal xi = alpha*(radius2 - r2); 145*c4762a1bSJed Brown 146*c4762a1bSJed Brown f0[0] = (-4.0*alpha - 8.0*PetscSqr(alpha)*r2*PetscTanhReal(xi)) * PetscSqr(1.0/PetscCoshReal(xi)); 147*c4762a1bSJed Brown } 148*c4762a1bSJed Brown 149*c4762a1bSJed Brown static void f0_cross_u(PetscInt dim, PetscInt Nf, PetscInt NfAux, 150*c4762a1bSJed Brown const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 151*c4762a1bSJed Brown const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 152*c4762a1bSJed Brown PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[]) 153*c4762a1bSJed Brown { 154*c4762a1bSJed Brown const PetscReal alpha = 50*4; 155*c4762a1bSJed Brown const PetscReal xy = (x[0]-0.5)*(x[1]-0.5); 156*c4762a1bSJed Brown 157*c4762a1bSJed Brown f0[0] = PetscSinReal(alpha*xy) * (alpha*PetscAbsReal(xy) < 2*PETSC_PI ? 1 : 0.01); 158*c4762a1bSJed Brown } 159*c4762a1bSJed Brown 160*c4762a1bSJed Brown static void f0_bd_u(PetscInt dim, PetscInt Nf, PetscInt NfAux, 161*c4762a1bSJed Brown const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 162*c4762a1bSJed Brown const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 163*c4762a1bSJed Brown PetscReal t, const PetscReal x[], const PetscReal n[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[]) 164*c4762a1bSJed Brown { 165*c4762a1bSJed Brown PetscInt d; 166*c4762a1bSJed Brown for (d = 0, f0[0] = 0.0; d < dim; ++d) f0[0] += -n[d]*2.0*x[d]; 167*c4762a1bSJed Brown } 168*c4762a1bSJed Brown 169*c4762a1bSJed Brown static void f1_bd_zero(PetscInt dim, PetscInt Nf, PetscInt NfAux, 170*c4762a1bSJed Brown const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 171*c4762a1bSJed Brown const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 172*c4762a1bSJed Brown PetscReal t, const PetscReal x[], const PetscReal n[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f1[]) 173*c4762a1bSJed Brown { 174*c4762a1bSJed Brown PetscInt comp; 175*c4762a1bSJed Brown for (comp = 0; comp < dim; ++comp) f1[comp] = 0.0; 176*c4762a1bSJed Brown } 177*c4762a1bSJed Brown 178*c4762a1bSJed Brown /* gradU[comp*dim+d] = {u_x, u_y} or {u_x, u_y, u_z} */ 179*c4762a1bSJed Brown static void f1_u(PetscInt dim, PetscInt Nf, PetscInt NfAux, 180*c4762a1bSJed Brown const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 181*c4762a1bSJed Brown const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 182*c4762a1bSJed Brown PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f1[]) 183*c4762a1bSJed Brown { 184*c4762a1bSJed Brown PetscInt d; 185*c4762a1bSJed Brown for (d = 0; d < dim; ++d) f1[d] = u_x[d]; 186*c4762a1bSJed Brown } 187*c4762a1bSJed Brown 188*c4762a1bSJed Brown /* < \nabla v, \nabla u + {\nabla u}^T > 189*c4762a1bSJed Brown This just gives \nabla u, give the perdiagonal for the transpose */ 190*c4762a1bSJed Brown static void g3_uu(PetscInt dim, PetscInt Nf, PetscInt NfAux, 191*c4762a1bSJed Brown const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 192*c4762a1bSJed Brown const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 193*c4762a1bSJed Brown PetscReal t, PetscReal u_tShift, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar g3[]) 194*c4762a1bSJed Brown { 195*c4762a1bSJed Brown PetscInt d; 196*c4762a1bSJed Brown for (d = 0; d < dim; ++d) g3[d*dim+d] = 1.0; 197*c4762a1bSJed Brown } 198*c4762a1bSJed Brown 199*c4762a1bSJed Brown /* 200*c4762a1bSJed Brown In 2D for x periodicity and y Dirichlet conditions, we use exact solution: 201*c4762a1bSJed Brown 202*c4762a1bSJed Brown u = sin(2 pi x) 203*c4762a1bSJed Brown f = -4 pi^2 sin(2 pi x) 204*c4762a1bSJed Brown 205*c4762a1bSJed Brown so that 206*c4762a1bSJed Brown 207*c4762a1bSJed Brown -\Delta u + f = 4 pi^2 sin(2 pi x) - 4 pi^2 sin(2 pi x) = 0 208*c4762a1bSJed Brown */ 209*c4762a1bSJed Brown static PetscErrorCode xtrig_u_2d(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx) 210*c4762a1bSJed Brown { 211*c4762a1bSJed Brown *u = PetscSinReal(2.0*PETSC_PI*x[0]); 212*c4762a1bSJed Brown return 0; 213*c4762a1bSJed Brown } 214*c4762a1bSJed Brown 215*c4762a1bSJed Brown static void f0_xtrig_u(PetscInt dim, PetscInt Nf, PetscInt NfAux, 216*c4762a1bSJed Brown const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 217*c4762a1bSJed Brown const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 218*c4762a1bSJed Brown PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[]) 219*c4762a1bSJed Brown { 220*c4762a1bSJed Brown f0[0] = -4.0*PetscSqr(PETSC_PI)*PetscSinReal(2.0*PETSC_PI*x[0]); 221*c4762a1bSJed Brown } 222*c4762a1bSJed Brown 223*c4762a1bSJed Brown /* 224*c4762a1bSJed Brown In 2D for x-y periodicity, we use exact solution: 225*c4762a1bSJed Brown 226*c4762a1bSJed Brown u = sin(2 pi x) sin(2 pi y) 227*c4762a1bSJed Brown f = -8 pi^2 sin(2 pi x) 228*c4762a1bSJed Brown 229*c4762a1bSJed Brown so that 230*c4762a1bSJed Brown 231*c4762a1bSJed Brown -\Delta u + f = 4 pi^2 sin(2 pi x) sin(2 pi y) + 4 pi^2 sin(2 pi x) sin(2 pi y) - 8 pi^2 sin(2 pi x) = 0 232*c4762a1bSJed Brown */ 233*c4762a1bSJed Brown static PetscErrorCode xytrig_u_2d(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx) 234*c4762a1bSJed Brown { 235*c4762a1bSJed Brown *u = PetscSinReal(2.0*PETSC_PI*x[0])*PetscSinReal(2.0*PETSC_PI*x[1]); 236*c4762a1bSJed Brown return 0; 237*c4762a1bSJed Brown } 238*c4762a1bSJed Brown 239*c4762a1bSJed Brown static void f0_xytrig_u(PetscInt dim, PetscInt Nf, PetscInt NfAux, 240*c4762a1bSJed Brown const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 241*c4762a1bSJed Brown const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 242*c4762a1bSJed Brown PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[]) 243*c4762a1bSJed Brown { 244*c4762a1bSJed Brown f0[0] = -8.0*PetscSqr(PETSC_PI)*PetscSinReal(2.0*PETSC_PI*x[0]); 245*c4762a1bSJed Brown } 246*c4762a1bSJed Brown 247*c4762a1bSJed Brown /* 248*c4762a1bSJed Brown In 2D for Dirichlet conditions with a variable coefficient, we use exact solution: 249*c4762a1bSJed Brown 250*c4762a1bSJed Brown u = x^2 + y^2 251*c4762a1bSJed Brown f = 6 (x + y) 252*c4762a1bSJed Brown nu = (x + y) 253*c4762a1bSJed Brown 254*c4762a1bSJed Brown so that 255*c4762a1bSJed Brown 256*c4762a1bSJed Brown -\div \nu \grad u + f = -6 (x + y) + 6 (x + y) = 0 257*c4762a1bSJed Brown */ 258*c4762a1bSJed Brown static PetscErrorCode nu_2d(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx) 259*c4762a1bSJed Brown { 260*c4762a1bSJed Brown *u = x[0] + x[1]; 261*c4762a1bSJed Brown return 0; 262*c4762a1bSJed Brown } 263*c4762a1bSJed Brown 264*c4762a1bSJed Brown void f0_analytic_u(PetscInt dim, PetscInt Nf, PetscInt NfAux, 265*c4762a1bSJed Brown const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 266*c4762a1bSJed Brown const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 267*c4762a1bSJed Brown PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[]) 268*c4762a1bSJed Brown { 269*c4762a1bSJed Brown f0[0] = 6.0*(x[0] + x[1]); 270*c4762a1bSJed Brown } 271*c4762a1bSJed Brown 272*c4762a1bSJed Brown /* gradU[comp*dim+d] = {u_x, u_y} or {u_x, u_y, u_z} */ 273*c4762a1bSJed Brown void f1_analytic_u(PetscInt dim, PetscInt Nf, PetscInt NfAux, 274*c4762a1bSJed Brown const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 275*c4762a1bSJed Brown const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 276*c4762a1bSJed Brown PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f1[]) 277*c4762a1bSJed Brown { 278*c4762a1bSJed Brown PetscInt d; 279*c4762a1bSJed Brown for (d = 0; d < dim; ++d) f1[d] = (x[0] + x[1])*u_x[d]; 280*c4762a1bSJed Brown } 281*c4762a1bSJed Brown 282*c4762a1bSJed Brown void f1_field_u(PetscInt dim, PetscInt Nf, PetscInt NfAux, 283*c4762a1bSJed Brown const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 284*c4762a1bSJed Brown const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 285*c4762a1bSJed Brown PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f1[]) 286*c4762a1bSJed Brown { 287*c4762a1bSJed Brown PetscInt d; 288*c4762a1bSJed Brown for (d = 0; d < dim; ++d) f1[d] = a[0]*u_x[d]; 289*c4762a1bSJed Brown } 290*c4762a1bSJed Brown 291*c4762a1bSJed Brown /* < \nabla v, \nabla u + {\nabla u}^T > 292*c4762a1bSJed Brown This just gives \nabla u, give the perdiagonal for the transpose */ 293*c4762a1bSJed Brown void g3_analytic_uu(PetscInt dim, PetscInt Nf, PetscInt NfAux, 294*c4762a1bSJed Brown const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 295*c4762a1bSJed Brown const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 296*c4762a1bSJed Brown PetscReal t, PetscReal u_tShift, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar g3[]) 297*c4762a1bSJed Brown { 298*c4762a1bSJed Brown PetscInt d; 299*c4762a1bSJed Brown for (d = 0; d < dim; ++d) g3[d*dim+d] = x[0] + x[1]; 300*c4762a1bSJed Brown } 301*c4762a1bSJed Brown 302*c4762a1bSJed Brown void g3_field_uu(PetscInt dim, PetscInt Nf, PetscInt NfAux, 303*c4762a1bSJed Brown const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 304*c4762a1bSJed Brown const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 305*c4762a1bSJed Brown PetscReal t, PetscReal u_tShift, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar g3[]) 306*c4762a1bSJed Brown { 307*c4762a1bSJed Brown PetscInt d; 308*c4762a1bSJed Brown for (d = 0; d < dim; ++d) g3[d*dim+d] = a[0]; 309*c4762a1bSJed Brown } 310*c4762a1bSJed Brown 311*c4762a1bSJed Brown /* 312*c4762a1bSJed Brown In 2D for Dirichlet conditions with a nonlinear coefficient (p-Laplacian with p = 4), we use exact solution: 313*c4762a1bSJed Brown 314*c4762a1bSJed Brown u = x^2 + y^2 315*c4762a1bSJed Brown f = 16 (x^2 + y^2) 316*c4762a1bSJed Brown nu = 1/2 |grad u|^2 317*c4762a1bSJed Brown 318*c4762a1bSJed Brown so that 319*c4762a1bSJed Brown 320*c4762a1bSJed Brown -\div \nu \grad u + f = -16 (x^2 + y^2) + 16 (x^2 + y^2) = 0 321*c4762a1bSJed Brown */ 322*c4762a1bSJed Brown void f0_analytic_nonlinear_u(PetscInt dim, PetscInt Nf, PetscInt NfAux, 323*c4762a1bSJed Brown const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 324*c4762a1bSJed Brown const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 325*c4762a1bSJed Brown PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[]) 326*c4762a1bSJed Brown { 327*c4762a1bSJed Brown f0[0] = 16.0*(x[0]*x[0] + x[1]*x[1]); 328*c4762a1bSJed Brown } 329*c4762a1bSJed Brown 330*c4762a1bSJed Brown /* gradU[comp*dim+d] = {u_x, u_y} or {u_x, u_y, u_z} */ 331*c4762a1bSJed Brown void f1_analytic_nonlinear_u(PetscInt dim, PetscInt Nf, PetscInt NfAux, 332*c4762a1bSJed Brown const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 333*c4762a1bSJed Brown const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 334*c4762a1bSJed Brown PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f1[]) 335*c4762a1bSJed Brown { 336*c4762a1bSJed Brown PetscScalar nu = 0.0; 337*c4762a1bSJed Brown PetscInt d; 338*c4762a1bSJed Brown for (d = 0; d < dim; ++d) nu += u_x[d]*u_x[d]; 339*c4762a1bSJed Brown for (d = 0; d < dim; ++d) f1[d] = 0.5*nu*u_x[d]; 340*c4762a1bSJed Brown } 341*c4762a1bSJed Brown 342*c4762a1bSJed Brown /* 343*c4762a1bSJed Brown grad (u + eps w) - grad u = eps grad w 344*c4762a1bSJed Brown 345*c4762a1bSJed Brown 1/2 |grad (u + eps w)|^2 grad (u + eps w) - 1/2 |grad u|^2 grad u 346*c4762a1bSJed Brown = 1/2 (|grad u|^2 + 2 eps <grad u,grad w>) (grad u + eps grad w) - 1/2 |grad u|^2 grad u 347*c4762a1bSJed Brown = 1/2 (eps |grad u|^2 grad w + 2 eps <grad u,grad w> grad u) 348*c4762a1bSJed Brown = eps (1/2 |grad u|^2 grad w + grad u <grad u,grad w>) 349*c4762a1bSJed Brown */ 350*c4762a1bSJed Brown void g3_analytic_nonlinear_uu(PetscInt dim, PetscInt Nf, PetscInt NfAux, 351*c4762a1bSJed Brown const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 352*c4762a1bSJed Brown const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 353*c4762a1bSJed Brown PetscReal t, PetscReal u_tShift, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar g3[]) 354*c4762a1bSJed Brown { 355*c4762a1bSJed Brown PetscScalar nu = 0.0; 356*c4762a1bSJed Brown PetscInt d, e; 357*c4762a1bSJed Brown for (d = 0; d < dim; ++d) nu += u_x[d]*u_x[d]; 358*c4762a1bSJed Brown for (d = 0; d < dim; ++d) { 359*c4762a1bSJed Brown g3[d*dim+d] = 0.5*nu; 360*c4762a1bSJed Brown for (e = 0; e < dim; ++e) { 361*c4762a1bSJed Brown g3[d*dim+e] += u_x[d]*u_x[e]; 362*c4762a1bSJed Brown } 363*c4762a1bSJed Brown } 364*c4762a1bSJed Brown } 365*c4762a1bSJed Brown 366*c4762a1bSJed Brown /* 367*c4762a1bSJed Brown In 3D for Dirichlet conditions we use exact solution: 368*c4762a1bSJed Brown 369*c4762a1bSJed Brown u = 2/3 (x^2 + y^2 + z^2) 370*c4762a1bSJed Brown f = 4 371*c4762a1bSJed Brown 372*c4762a1bSJed Brown so that 373*c4762a1bSJed Brown 374*c4762a1bSJed Brown -\Delta u + f = -2/3 * 6 + 4 = 0 375*c4762a1bSJed Brown 376*c4762a1bSJed Brown For Neumann conditions, we have 377*c4762a1bSJed Brown 378*c4762a1bSJed Brown -\nabla u \cdot -\hat z |_{z=0} = (2z)|_{z=0} = 0 (bottom) 379*c4762a1bSJed Brown -\nabla u \cdot \hat z |_{z=1} = -(2z)|_{z=1} = -2 (top) 380*c4762a1bSJed Brown -\nabla u \cdot -\hat y |_{y=0} = (2y)|_{y=0} = 0 (front) 381*c4762a1bSJed Brown -\nabla u \cdot \hat y |_{y=1} = -(2y)|_{y=1} = -2 (back) 382*c4762a1bSJed Brown -\nabla u \cdot -\hat x |_{x=0} = (2x)|_{x=0} = 0 (left) 383*c4762a1bSJed Brown -\nabla u \cdot \hat x |_{x=1} = -(2x)|_{x=1} = -2 (right) 384*c4762a1bSJed Brown 385*c4762a1bSJed Brown Which we can express as 386*c4762a1bSJed Brown 387*c4762a1bSJed Brown \nabla u \cdot \hat n|_\Gamma = {2 x, 2 y, 2z} \cdot \hat n = 2 (x + y + z) 388*c4762a1bSJed Brown */ 389*c4762a1bSJed Brown static PetscErrorCode quadratic_u_3d(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx) 390*c4762a1bSJed Brown { 391*c4762a1bSJed Brown *u = 2.0*(x[0]*x[0] + x[1]*x[1] + x[2]*x[2])/3.0; 392*c4762a1bSJed Brown return 0; 393*c4762a1bSJed Brown } 394*c4762a1bSJed Brown 395*c4762a1bSJed Brown static void quadratic_u_field_3d(PetscInt dim, PetscInt Nf, PetscInt NfAux, 396*c4762a1bSJed Brown const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 397*c4762a1bSJed Brown const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 398*c4762a1bSJed Brown PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar uexact[]) 399*c4762a1bSJed Brown { 400*c4762a1bSJed Brown uexact[0] = a[0]; 401*c4762a1bSJed Brown } 402*c4762a1bSJed Brown 403*c4762a1bSJed Brown static void bd_integral_2d(PetscInt dim, PetscInt Nf, PetscInt NfAux, 404*c4762a1bSJed Brown const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 405*c4762a1bSJed Brown const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 406*c4762a1bSJed Brown PetscReal t, const PetscReal x[], const PetscReal n[], PetscInt numConstants, const PetscScalar constants[], PetscScalar *uint) 407*c4762a1bSJed Brown { 408*c4762a1bSJed Brown uint[0] = u[0]; 409*c4762a1bSJed Brown } 410*c4762a1bSJed Brown 411*c4762a1bSJed Brown static PetscErrorCode ProcessOptions(MPI_Comm comm, AppCtx *options) 412*c4762a1bSJed Brown { 413*c4762a1bSJed Brown const char *bcTypes[3] = {"neumann", "dirichlet", "none"}; 414*c4762a1bSJed Brown const char *runTypes[4] = {"full", "exact", "test", "perf"}; 415*c4762a1bSJed Brown const char *coeffTypes[6] = {"none", "analytic", "field", "nonlinear", "circle", "cross"}; 416*c4762a1bSJed Brown PetscInt bd, bc, run, coeff, n; 417*c4762a1bSJed Brown PetscBool flg; 418*c4762a1bSJed Brown PetscErrorCode ierr; 419*c4762a1bSJed Brown 420*c4762a1bSJed Brown PetscFunctionBeginUser; 421*c4762a1bSJed Brown options->debug = 0; 422*c4762a1bSJed Brown options->runType = RUN_FULL; 423*c4762a1bSJed Brown options->dim = 2; 424*c4762a1bSJed Brown options->periodicity[0] = DM_BOUNDARY_NONE; 425*c4762a1bSJed Brown options->periodicity[1] = DM_BOUNDARY_NONE; 426*c4762a1bSJed Brown options->periodicity[2] = DM_BOUNDARY_NONE; 427*c4762a1bSJed Brown options->cells[0] = 2; 428*c4762a1bSJed Brown options->cells[1] = 2; 429*c4762a1bSJed Brown options->cells[2] = 2; 430*c4762a1bSJed Brown options->filename[0] = '\0'; 431*c4762a1bSJed Brown options->interpolate = PETSC_TRUE; 432*c4762a1bSJed Brown options->refinementLimit = 0.0; 433*c4762a1bSJed Brown options->bcType = DIRICHLET; 434*c4762a1bSJed Brown options->variableCoefficient = COEFF_NONE; 435*c4762a1bSJed Brown options->fieldBC = PETSC_FALSE; 436*c4762a1bSJed Brown options->jacobianMF = PETSC_FALSE; 437*c4762a1bSJed Brown options->showInitial = PETSC_FALSE; 438*c4762a1bSJed Brown options->showSolution = PETSC_FALSE; 439*c4762a1bSJed Brown options->restart = PETSC_FALSE; 440*c4762a1bSJed Brown options->viewHierarchy = PETSC_FALSE; 441*c4762a1bSJed Brown options->simplex = PETSC_TRUE; 442*c4762a1bSJed Brown options->quiet = PETSC_FALSE; 443*c4762a1bSJed Brown options->nonzInit = PETSC_FALSE; 444*c4762a1bSJed Brown options->bdIntegral = PETSC_FALSE; 445*c4762a1bSJed Brown options->checkksp = PETSC_FALSE; 446*c4762a1bSJed Brown 447*c4762a1bSJed Brown ierr = PetscOptionsBegin(comm, "", "Poisson Problem Options", "DMPLEX");CHKERRQ(ierr); 448*c4762a1bSJed Brown ierr = PetscOptionsInt("-debug", "The debugging level", "ex12.c", options->debug, &options->debug, NULL);CHKERRQ(ierr); 449*c4762a1bSJed Brown run = options->runType; 450*c4762a1bSJed Brown ierr = PetscOptionsEList("-run_type", "The run type", "ex12.c", runTypes, 4, runTypes[options->runType], &run, NULL);CHKERRQ(ierr); 451*c4762a1bSJed Brown 452*c4762a1bSJed Brown options->runType = (RunType) run; 453*c4762a1bSJed Brown 454*c4762a1bSJed Brown ierr = PetscOptionsInt("-dim", "The topological mesh dimension", "ex12.c", options->dim, &options->dim, NULL);CHKERRQ(ierr); 455*c4762a1bSJed Brown bd = options->periodicity[0]; 456*c4762a1bSJed Brown ierr = PetscOptionsEList("-x_periodicity", "The x-boundary periodicity", "ex12.c", DMBoundaryTypes, 5, DMBoundaryTypes[options->periodicity[0]], &bd, NULL);CHKERRQ(ierr); 457*c4762a1bSJed Brown options->periodicity[0] = (DMBoundaryType) bd; 458*c4762a1bSJed Brown bd = options->periodicity[1]; 459*c4762a1bSJed Brown ierr = PetscOptionsEList("-y_periodicity", "The y-boundary periodicity", "ex12.c", DMBoundaryTypes, 5, DMBoundaryTypes[options->periodicity[1]], &bd, NULL);CHKERRQ(ierr); 460*c4762a1bSJed Brown options->periodicity[1] = (DMBoundaryType) bd; 461*c4762a1bSJed Brown bd = options->periodicity[2]; 462*c4762a1bSJed Brown ierr = PetscOptionsEList("-z_periodicity", "The z-boundary periodicity", "ex12.c", DMBoundaryTypes, 5, DMBoundaryTypes[options->periodicity[2]], &bd, NULL);CHKERRQ(ierr); 463*c4762a1bSJed Brown options->periodicity[2] = (DMBoundaryType) bd; 464*c4762a1bSJed Brown n = 3; 465*c4762a1bSJed Brown ierr = PetscOptionsIntArray("-cells", "The initial mesh division", "ex12.c", options->cells, &n, NULL);CHKERRQ(ierr); 466*c4762a1bSJed Brown ierr = PetscOptionsString("-f", "Mesh filename to read", "ex12.c", options->filename, options->filename, sizeof(options->filename), &flg);CHKERRQ(ierr); 467*c4762a1bSJed Brown ierr = PetscOptionsBool("-interpolate", "Generate intermediate mesh elements", "ex12.c", options->interpolate, &options->interpolate, NULL);CHKERRQ(ierr); 468*c4762a1bSJed Brown ierr = PetscOptionsReal("-refinement_limit", "The largest allowable cell volume", "ex12.c", options->refinementLimit, &options->refinementLimit, NULL);CHKERRQ(ierr); 469*c4762a1bSJed Brown bc = options->bcType; 470*c4762a1bSJed Brown ierr = PetscOptionsEList("-bc_type","Type of boundary condition","ex12.c",bcTypes,3,bcTypes[options->bcType],&bc,NULL);CHKERRQ(ierr); 471*c4762a1bSJed Brown options->bcType = (BCType) bc; 472*c4762a1bSJed Brown coeff = options->variableCoefficient; 473*c4762a1bSJed Brown ierr = PetscOptionsEList("-variable_coefficient","Type of variable coefficent","ex12.c",coeffTypes,6,coeffTypes[options->variableCoefficient],&coeff,NULL);CHKERRQ(ierr); 474*c4762a1bSJed Brown options->variableCoefficient = (CoeffType) coeff; 475*c4762a1bSJed Brown 476*c4762a1bSJed Brown ierr = PetscOptionsBool("-field_bc", "Use a field representation for the BC", "ex12.c", options->fieldBC, &options->fieldBC, NULL);CHKERRQ(ierr); 477*c4762a1bSJed Brown ierr = PetscOptionsBool("-jacobian_mf", "Calculate the action of the Jacobian on the fly", "ex12.c", options->jacobianMF, &options->jacobianMF, NULL);CHKERRQ(ierr); 478*c4762a1bSJed Brown ierr = PetscOptionsBool("-show_initial", "Output the initial guess for verification", "ex12.c", options->showInitial, &options->showInitial, NULL);CHKERRQ(ierr); 479*c4762a1bSJed Brown ierr = PetscOptionsBool("-show_solution", "Output the solution for verification", "ex12.c", options->showSolution, &options->showSolution, NULL);CHKERRQ(ierr); 480*c4762a1bSJed Brown ierr = PetscOptionsBool("-restart", "Read in the mesh and solution from a file", "ex12.c", options->restart, &options->restart, NULL);CHKERRQ(ierr); 481*c4762a1bSJed Brown ierr = PetscOptionsBool("-dm_view_hierarchy", "View the coarsened hierarchy", "ex12.c", options->viewHierarchy, &options->viewHierarchy, NULL);CHKERRQ(ierr); 482*c4762a1bSJed Brown ierr = PetscOptionsBool("-simplex", "Simplicial (true) or tensor (false) mesh", "ex12.c", options->simplex, &options->simplex, NULL);CHKERRQ(ierr); 483*c4762a1bSJed Brown ierr = PetscOptionsBool("-quiet", "Don't print any vecs", "ex12.c", options->quiet, &options->quiet, NULL);CHKERRQ(ierr); 484*c4762a1bSJed Brown ierr = PetscOptionsBool("-nonzero_initial_guess", "nonzero intial guess", "ex12.c", options->nonzInit, &options->nonzInit, NULL);CHKERRQ(ierr); 485*c4762a1bSJed Brown ierr = PetscOptionsBool("-bd_integral", "Compute the integral of the solution on the boundary", "ex12.c", options->bdIntegral, &options->bdIntegral, NULL);CHKERRQ(ierr); 486*c4762a1bSJed Brown if (options->runType == RUN_TEST) { 487*c4762a1bSJed Brown ierr = PetscOptionsBool("-run_test_check_ksp", "Check solution of KSP", "ex12.c", options->checkksp, &options->checkksp, NULL);CHKERRQ(ierr); 488*c4762a1bSJed Brown } 489*c4762a1bSJed Brown ierr = PetscOptionsEnd(); 490*c4762a1bSJed Brown ierr = PetscLogEventRegister("CreateMesh", DM_CLASSID, &options->createMeshEvent);CHKERRQ(ierr); 491*c4762a1bSJed Brown PetscFunctionReturn(0); 492*c4762a1bSJed Brown } 493*c4762a1bSJed Brown 494*c4762a1bSJed Brown static PetscErrorCode CreateBCLabel(DM dm, const char name[]) 495*c4762a1bSJed Brown { 496*c4762a1bSJed Brown DMLabel label; 497*c4762a1bSJed Brown PetscErrorCode ierr; 498*c4762a1bSJed Brown 499*c4762a1bSJed Brown PetscFunctionBeginUser; 500*c4762a1bSJed Brown ierr = DMCreateLabel(dm, name);CHKERRQ(ierr); 501*c4762a1bSJed Brown ierr = DMGetLabel(dm, name, &label);CHKERRQ(ierr); 502*c4762a1bSJed Brown ierr = DMPlexMarkBoundaryFaces(dm, 1, label);CHKERRQ(ierr); 503*c4762a1bSJed Brown ierr = DMPlexLabelComplete(dm, label);CHKERRQ(ierr); 504*c4762a1bSJed Brown PetscFunctionReturn(0); 505*c4762a1bSJed Brown } 506*c4762a1bSJed Brown 507*c4762a1bSJed Brown static PetscErrorCode CreateMesh(MPI_Comm comm, AppCtx *user, DM *dm) 508*c4762a1bSJed Brown { 509*c4762a1bSJed Brown PetscInt dim = user->dim; 510*c4762a1bSJed Brown const char *filename = user->filename; 511*c4762a1bSJed Brown PetscBool interpolate = user->interpolate; 512*c4762a1bSJed Brown PetscReal refinementLimit = user->refinementLimit; 513*c4762a1bSJed Brown size_t len; 514*c4762a1bSJed Brown PetscErrorCode ierr; 515*c4762a1bSJed Brown 516*c4762a1bSJed Brown PetscFunctionBeginUser; 517*c4762a1bSJed Brown ierr = PetscLogEventBegin(user->createMeshEvent,0,0,0,0);CHKERRQ(ierr); 518*c4762a1bSJed Brown ierr = PetscStrlen(filename, &len);CHKERRQ(ierr); 519*c4762a1bSJed Brown if (!len) { 520*c4762a1bSJed Brown PetscInt d; 521*c4762a1bSJed Brown 522*c4762a1bSJed Brown if (user->periodicity[0] || user->periodicity[1] || user->periodicity[2]) for (d = 0; d < dim; ++d) user->cells[d] = PetscMax(user->cells[d], 3); 523*c4762a1bSJed Brown ierr = DMPlexCreateBoxMesh(comm, dim, user->simplex, user->cells, NULL, NULL, user->periodicity, interpolate, dm);CHKERRQ(ierr); 524*c4762a1bSJed Brown ierr = PetscObjectSetName((PetscObject) *dm, "Mesh");CHKERRQ(ierr); 525*c4762a1bSJed Brown } else { 526*c4762a1bSJed Brown ierr = DMPlexCreateFromFile(comm, filename, interpolate, dm);CHKERRQ(ierr); 527*c4762a1bSJed Brown ierr = DMPlexSetRefinementUniform(*dm, PETSC_FALSE);CHKERRQ(ierr); 528*c4762a1bSJed Brown } 529*c4762a1bSJed Brown { 530*c4762a1bSJed Brown PetscPartitioner part; 531*c4762a1bSJed Brown DM refinedMesh = NULL; 532*c4762a1bSJed Brown DM distributedMesh = NULL; 533*c4762a1bSJed Brown 534*c4762a1bSJed Brown /* Refine mesh using a volume constraint */ 535*c4762a1bSJed Brown if (refinementLimit > 0.0) { 536*c4762a1bSJed Brown ierr = DMPlexSetRefinementLimit(*dm, refinementLimit);CHKERRQ(ierr); 537*c4762a1bSJed Brown ierr = DMRefine(*dm, comm, &refinedMesh);CHKERRQ(ierr); 538*c4762a1bSJed Brown if (refinedMesh) { 539*c4762a1bSJed Brown const char *name; 540*c4762a1bSJed Brown 541*c4762a1bSJed Brown ierr = PetscObjectGetName((PetscObject) *dm, &name);CHKERRQ(ierr); 542*c4762a1bSJed Brown ierr = PetscObjectSetName((PetscObject) refinedMesh, name);CHKERRQ(ierr); 543*c4762a1bSJed Brown ierr = DMDestroy(dm);CHKERRQ(ierr); 544*c4762a1bSJed Brown *dm = refinedMesh; 545*c4762a1bSJed Brown } 546*c4762a1bSJed Brown } 547*c4762a1bSJed Brown /* Distribute mesh over processes */ 548*c4762a1bSJed Brown ierr = DMPlexGetPartitioner(*dm,&part);CHKERRQ(ierr); 549*c4762a1bSJed Brown ierr = PetscPartitionerSetFromOptions(part);CHKERRQ(ierr); 550*c4762a1bSJed Brown ierr = DMPlexDistribute(*dm, 0, NULL, &distributedMesh);CHKERRQ(ierr); 551*c4762a1bSJed Brown if (distributedMesh) { 552*c4762a1bSJed Brown ierr = DMDestroy(dm);CHKERRQ(ierr); 553*c4762a1bSJed Brown *dm = distributedMesh; 554*c4762a1bSJed Brown } 555*c4762a1bSJed Brown } 556*c4762a1bSJed Brown if (interpolate) { 557*c4762a1bSJed Brown if (user->bcType == NEUMANN) { 558*c4762a1bSJed Brown DMLabel label; 559*c4762a1bSJed Brown 560*c4762a1bSJed Brown ierr = DMCreateLabel(*dm, "boundary");CHKERRQ(ierr); 561*c4762a1bSJed Brown ierr = DMGetLabel(*dm, "boundary", &label);CHKERRQ(ierr); 562*c4762a1bSJed Brown ierr = DMPlexMarkBoundaryFaces(*dm, 1, label);CHKERRQ(ierr); 563*c4762a1bSJed Brown } else if (user->bcType == DIRICHLET) { 564*c4762a1bSJed Brown PetscBool hasLabel; 565*c4762a1bSJed Brown 566*c4762a1bSJed Brown ierr = DMHasLabel(*dm,"marker",&hasLabel);CHKERRQ(ierr); 567*c4762a1bSJed Brown if (!hasLabel) {ierr = CreateBCLabel(*dm, "marker");CHKERRQ(ierr);} 568*c4762a1bSJed Brown } 569*c4762a1bSJed Brown } 570*c4762a1bSJed Brown { 571*c4762a1bSJed Brown char convType[256]; 572*c4762a1bSJed Brown PetscBool flg; 573*c4762a1bSJed Brown 574*c4762a1bSJed Brown ierr = PetscOptionsBegin(comm, "", "Mesh conversion options", "DMPLEX");CHKERRQ(ierr); 575*c4762a1bSJed Brown ierr = PetscOptionsFList("-dm_plex_convert_type","Convert DMPlex to another format","ex12",DMList,DMPLEX,convType,256,&flg);CHKERRQ(ierr); 576*c4762a1bSJed Brown ierr = PetscOptionsEnd(); 577*c4762a1bSJed Brown if (flg) { 578*c4762a1bSJed Brown DM dmConv; 579*c4762a1bSJed Brown 580*c4762a1bSJed Brown ierr = DMConvert(*dm,convType,&dmConv);CHKERRQ(ierr); 581*c4762a1bSJed Brown if (dmConv) { 582*c4762a1bSJed Brown ierr = DMDestroy(dm);CHKERRQ(ierr); 583*c4762a1bSJed Brown *dm = dmConv; 584*c4762a1bSJed Brown } 585*c4762a1bSJed Brown } 586*c4762a1bSJed Brown } 587*c4762a1bSJed Brown ierr = DMLocalizeCoordinates(*dm);CHKERRQ(ierr); /* needed for periodic */ 588*c4762a1bSJed Brown ierr = DMSetFromOptions(*dm);CHKERRQ(ierr); 589*c4762a1bSJed Brown ierr = DMViewFromOptions(*dm, NULL, "-dm_view");CHKERRQ(ierr); 590*c4762a1bSJed Brown if (user->viewHierarchy) { 591*c4762a1bSJed Brown DM cdm = *dm; 592*c4762a1bSJed Brown PetscInt i = 0; 593*c4762a1bSJed Brown char buf[256]; 594*c4762a1bSJed Brown 595*c4762a1bSJed Brown while (cdm) { 596*c4762a1bSJed Brown ierr = DMSetUp(cdm);CHKERRQ(ierr); 597*c4762a1bSJed Brown ierr = DMGetCoarseDM(cdm, &cdm);CHKERRQ(ierr); 598*c4762a1bSJed Brown ++i; 599*c4762a1bSJed Brown } 600*c4762a1bSJed Brown cdm = *dm; 601*c4762a1bSJed Brown while (cdm) { 602*c4762a1bSJed Brown PetscViewer viewer; 603*c4762a1bSJed Brown PetscBool isHDF5, isVTK; 604*c4762a1bSJed Brown 605*c4762a1bSJed Brown --i; 606*c4762a1bSJed Brown ierr = PetscViewerCreate(comm,&viewer);CHKERRQ(ierr); 607*c4762a1bSJed Brown ierr = PetscViewerSetType(viewer,PETSCVIEWERHDF5);CHKERRQ(ierr); 608*c4762a1bSJed Brown ierr = PetscViewerSetOptionsPrefix(viewer,"hierarchy_");CHKERRQ(ierr); 609*c4762a1bSJed Brown ierr = PetscViewerSetFromOptions(viewer);CHKERRQ(ierr); 610*c4762a1bSJed Brown ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5,&isHDF5);CHKERRQ(ierr); 611*c4762a1bSJed Brown ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERVTK,&isVTK);CHKERRQ(ierr); 612*c4762a1bSJed Brown if (isHDF5) { 613*c4762a1bSJed Brown ierr = PetscSNPrintf(buf, 256, "ex12-%d.h5", i);CHKERRQ(ierr); 614*c4762a1bSJed Brown } else if (isVTK) { 615*c4762a1bSJed Brown ierr = PetscSNPrintf(buf, 256, "ex12-%d.vtu", i);CHKERRQ(ierr); 616*c4762a1bSJed Brown ierr = PetscViewerPushFormat(viewer,PETSC_VIEWER_VTK_VTU);CHKERRQ(ierr); 617*c4762a1bSJed Brown } else { 618*c4762a1bSJed Brown ierr = PetscSNPrintf(buf, 256, "ex12-%d", i);CHKERRQ(ierr); 619*c4762a1bSJed Brown } 620*c4762a1bSJed Brown ierr = PetscViewerFileSetMode(viewer,FILE_MODE_WRITE);CHKERRQ(ierr); 621*c4762a1bSJed Brown ierr = PetscViewerFileSetName(viewer,buf);CHKERRQ(ierr); 622*c4762a1bSJed Brown ierr = DMView(cdm, viewer);CHKERRQ(ierr); 623*c4762a1bSJed Brown ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 624*c4762a1bSJed Brown ierr = DMGetCoarseDM(cdm, &cdm);CHKERRQ(ierr); 625*c4762a1bSJed Brown } 626*c4762a1bSJed Brown } 627*c4762a1bSJed Brown ierr = PetscLogEventEnd(user->createMeshEvent,0,0,0,0);CHKERRQ(ierr); 628*c4762a1bSJed Brown PetscFunctionReturn(0); 629*c4762a1bSJed Brown } 630*c4762a1bSJed Brown 631*c4762a1bSJed Brown static PetscErrorCode SetupProblem(DM dm, AppCtx *user) 632*c4762a1bSJed Brown { 633*c4762a1bSJed Brown PetscDS prob; 634*c4762a1bSJed Brown const PetscInt id = 1; 635*c4762a1bSJed Brown PetscErrorCode ierr; 636*c4762a1bSJed Brown 637*c4762a1bSJed Brown PetscFunctionBeginUser; 638*c4762a1bSJed Brown ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 639*c4762a1bSJed Brown switch (user->variableCoefficient) { 640*c4762a1bSJed Brown case COEFF_NONE: 641*c4762a1bSJed Brown if (user->periodicity[0]) { 642*c4762a1bSJed Brown if (user->periodicity[1]) { 643*c4762a1bSJed Brown ierr = PetscDSSetResidual(prob, 0, f0_xytrig_u, f1_u);CHKERRQ(ierr); 644*c4762a1bSJed Brown ierr = PetscDSSetJacobian(prob, 0, 0, NULL, NULL, NULL, g3_uu);CHKERRQ(ierr); 645*c4762a1bSJed Brown } else { 646*c4762a1bSJed Brown ierr = PetscDSSetResidual(prob, 0, f0_xtrig_u, f1_u);CHKERRQ(ierr); 647*c4762a1bSJed Brown ierr = PetscDSSetJacobian(prob, 0, 0, NULL, NULL, NULL, g3_uu);CHKERRQ(ierr); 648*c4762a1bSJed Brown } 649*c4762a1bSJed Brown } else { 650*c4762a1bSJed Brown ierr = PetscDSSetResidual(prob, 0, f0_u, f1_u);CHKERRQ(ierr); 651*c4762a1bSJed Brown ierr = PetscDSSetJacobian(prob, 0, 0, NULL, NULL, NULL, g3_uu);CHKERRQ(ierr); 652*c4762a1bSJed Brown } 653*c4762a1bSJed Brown break; 654*c4762a1bSJed Brown case COEFF_ANALYTIC: 655*c4762a1bSJed Brown ierr = PetscDSSetResidual(prob, 0, f0_analytic_u, f1_analytic_u);CHKERRQ(ierr); 656*c4762a1bSJed Brown ierr = PetscDSSetJacobian(prob, 0, 0, NULL, NULL, NULL, g3_analytic_uu);CHKERRQ(ierr); 657*c4762a1bSJed Brown break; 658*c4762a1bSJed Brown case COEFF_FIELD: 659*c4762a1bSJed Brown ierr = PetscDSSetResidual(prob, 0, f0_analytic_u, f1_field_u);CHKERRQ(ierr); 660*c4762a1bSJed Brown ierr = PetscDSSetJacobian(prob, 0, 0, NULL, NULL, NULL, g3_field_uu);CHKERRQ(ierr); 661*c4762a1bSJed Brown break; 662*c4762a1bSJed Brown case COEFF_NONLINEAR: 663*c4762a1bSJed Brown ierr = PetscDSSetResidual(prob, 0, f0_analytic_nonlinear_u, f1_analytic_nonlinear_u);CHKERRQ(ierr); 664*c4762a1bSJed Brown ierr = PetscDSSetJacobian(prob, 0, 0, NULL, NULL, NULL, g3_analytic_nonlinear_uu);CHKERRQ(ierr); 665*c4762a1bSJed Brown break; 666*c4762a1bSJed Brown case COEFF_CIRCLE: 667*c4762a1bSJed Brown ierr = PetscDSSetResidual(prob, 0, f0_circle_u, f1_u);CHKERRQ(ierr); 668*c4762a1bSJed Brown ierr = PetscDSSetJacobian(prob, 0, 0, NULL, NULL, NULL, g3_uu);CHKERRQ(ierr); 669*c4762a1bSJed Brown break; 670*c4762a1bSJed Brown case COEFF_CROSS: 671*c4762a1bSJed Brown ierr = PetscDSSetResidual(prob, 0, f0_cross_u, f1_u);CHKERRQ(ierr); 672*c4762a1bSJed Brown ierr = PetscDSSetJacobian(prob, 0, 0, NULL, NULL, NULL, g3_uu);CHKERRQ(ierr); 673*c4762a1bSJed Brown break; 674*c4762a1bSJed Brown default: SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid variable coefficient type %d", user->variableCoefficient); 675*c4762a1bSJed Brown } 676*c4762a1bSJed Brown switch (user->dim) { 677*c4762a1bSJed Brown case 2: 678*c4762a1bSJed Brown switch (user->variableCoefficient) { 679*c4762a1bSJed Brown case COEFF_CIRCLE: 680*c4762a1bSJed Brown user->exactFuncs[0] = circle_u_2d;break; 681*c4762a1bSJed Brown case COEFF_CROSS: 682*c4762a1bSJed Brown user->exactFuncs[0] = cross_u_2d;break; 683*c4762a1bSJed Brown default: 684*c4762a1bSJed Brown if (user->periodicity[0]) { 685*c4762a1bSJed Brown if (user->periodicity[1]) { 686*c4762a1bSJed Brown user->exactFuncs[0] = xytrig_u_2d; 687*c4762a1bSJed Brown } else { 688*c4762a1bSJed Brown user->exactFuncs[0] = xtrig_u_2d; 689*c4762a1bSJed Brown } 690*c4762a1bSJed Brown } else { 691*c4762a1bSJed Brown user->exactFuncs[0] = quadratic_u_2d; 692*c4762a1bSJed Brown user->exactFields[0] = quadratic_u_field_2d; 693*c4762a1bSJed Brown } 694*c4762a1bSJed Brown } 695*c4762a1bSJed Brown if (user->bcType == NEUMANN) {ierr = PetscDSSetBdResidual(prob, 0, f0_bd_u, f1_bd_zero);CHKERRQ(ierr);} 696*c4762a1bSJed Brown break; 697*c4762a1bSJed Brown case 3: 698*c4762a1bSJed Brown user->exactFuncs[0] = quadratic_u_3d; 699*c4762a1bSJed Brown user->exactFields[0] = quadratic_u_field_3d; 700*c4762a1bSJed Brown if (user->bcType == NEUMANN) {ierr = PetscDSSetBdResidual(prob, 0, f0_bd_u, f1_bd_zero);CHKERRQ(ierr);} 701*c4762a1bSJed Brown break; 702*c4762a1bSJed Brown default: 703*c4762a1bSJed Brown SETERRQ1(PETSC_COMM_WORLD, PETSC_ERR_ARG_OUTOFRANGE, "Invalid dimension %d", user->dim); 704*c4762a1bSJed Brown } 705*c4762a1bSJed Brown if (user->bcType != NONE) { 706*c4762a1bSJed Brown ierr = PetscDSAddBoundary(prob, user->bcType == DIRICHLET ? (user->fieldBC ? DM_BC_ESSENTIAL_FIELD : DM_BC_ESSENTIAL) : DM_BC_NATURAL, 707*c4762a1bSJed Brown "wall", user->bcType == DIRICHLET ? "marker" : "boundary", 0, 0, NULL, 708*c4762a1bSJed Brown user->fieldBC ? (void (*)(void)) user->exactFields[0] : (void (*)(void)) user->exactFuncs[0], 1, &id, user);CHKERRQ(ierr); 709*c4762a1bSJed Brown } 710*c4762a1bSJed Brown ierr = PetscDSSetExactSolution(prob, 0, user->exactFuncs[0], user);CHKERRQ(ierr); 711*c4762a1bSJed Brown PetscFunctionReturn(0); 712*c4762a1bSJed Brown } 713*c4762a1bSJed Brown 714*c4762a1bSJed Brown static PetscErrorCode SetupMaterial(DM dm, DM dmAux, AppCtx *user) 715*c4762a1bSJed Brown { 716*c4762a1bSJed Brown PetscErrorCode (*matFuncs[1])(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar u[], void *ctx) = {nu_2d}; 717*c4762a1bSJed Brown Vec nu; 718*c4762a1bSJed Brown PetscErrorCode ierr; 719*c4762a1bSJed Brown 720*c4762a1bSJed Brown PetscFunctionBegin; 721*c4762a1bSJed Brown ierr = DMCreateLocalVector(dmAux, &nu);CHKERRQ(ierr); 722*c4762a1bSJed Brown ierr = DMProjectFunctionLocal(dmAux, 0.0, matFuncs, NULL, INSERT_ALL_VALUES, nu);CHKERRQ(ierr); 723*c4762a1bSJed Brown ierr = PetscObjectCompose((PetscObject) dm, "A", (PetscObject) nu);CHKERRQ(ierr); 724*c4762a1bSJed Brown ierr = VecDestroy(&nu);CHKERRQ(ierr); 725*c4762a1bSJed Brown PetscFunctionReturn(0); 726*c4762a1bSJed Brown } 727*c4762a1bSJed Brown 728*c4762a1bSJed Brown static PetscErrorCode SetupBC(DM dm, DM dmAux, AppCtx *user) 729*c4762a1bSJed Brown { 730*c4762a1bSJed Brown PetscErrorCode (*bcFuncs[1])(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar u[], void *ctx); 731*c4762a1bSJed Brown Vec uexact; 732*c4762a1bSJed Brown PetscInt dim; 733*c4762a1bSJed Brown PetscErrorCode ierr; 734*c4762a1bSJed Brown 735*c4762a1bSJed Brown PetscFunctionBegin; 736*c4762a1bSJed Brown ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 737*c4762a1bSJed Brown if (dim == 2) bcFuncs[0] = quadratic_u_2d; 738*c4762a1bSJed Brown else bcFuncs[0] = quadratic_u_3d; 739*c4762a1bSJed Brown ierr = DMCreateLocalVector(dmAux, &uexact);CHKERRQ(ierr); 740*c4762a1bSJed Brown ierr = DMProjectFunctionLocal(dmAux, 0.0, bcFuncs, NULL, INSERT_ALL_VALUES, uexact);CHKERRQ(ierr); 741*c4762a1bSJed Brown ierr = PetscObjectCompose((PetscObject) dm, "A", (PetscObject) uexact);CHKERRQ(ierr); 742*c4762a1bSJed Brown ierr = VecDestroy(&uexact);CHKERRQ(ierr); 743*c4762a1bSJed Brown PetscFunctionReturn(0); 744*c4762a1bSJed Brown } 745*c4762a1bSJed Brown 746*c4762a1bSJed Brown static PetscErrorCode SetupAuxDM(DM dm, PetscFE feAux, AppCtx *user) 747*c4762a1bSJed Brown { 748*c4762a1bSJed Brown DM dmAux, coordDM; 749*c4762a1bSJed Brown PetscErrorCode ierr; 750*c4762a1bSJed Brown 751*c4762a1bSJed Brown PetscFunctionBegin; 752*c4762a1bSJed Brown /* MUST call DMGetCoordinateDM() in order to get p4est setup if present */ 753*c4762a1bSJed Brown ierr = DMGetCoordinateDM(dm, &coordDM);CHKERRQ(ierr); 754*c4762a1bSJed Brown if (!feAux) PetscFunctionReturn(0); 755*c4762a1bSJed Brown ierr = DMClone(dm, &dmAux);CHKERRQ(ierr); 756*c4762a1bSJed Brown ierr = PetscObjectCompose((PetscObject) dm, "dmAux", (PetscObject) dmAux);CHKERRQ(ierr); 757*c4762a1bSJed Brown ierr = DMSetCoordinateDM(dmAux, coordDM);CHKERRQ(ierr); 758*c4762a1bSJed Brown ierr = DMSetField(dmAux, 0, NULL, (PetscObject) feAux);CHKERRQ(ierr); 759*c4762a1bSJed Brown ierr = DMCreateDS(dmAux);CHKERRQ(ierr); 760*c4762a1bSJed Brown if (user->fieldBC) {ierr = SetupBC(dm, dmAux, user);CHKERRQ(ierr);} 761*c4762a1bSJed Brown else {ierr = SetupMaterial(dm, dmAux, user);CHKERRQ(ierr);} 762*c4762a1bSJed Brown ierr = DMDestroy(&dmAux);CHKERRQ(ierr); 763*c4762a1bSJed Brown PetscFunctionReturn(0); 764*c4762a1bSJed Brown } 765*c4762a1bSJed Brown 766*c4762a1bSJed Brown static PetscErrorCode SetupDiscretization(DM dm, AppCtx *user) 767*c4762a1bSJed Brown { 768*c4762a1bSJed Brown DM cdm = dm; 769*c4762a1bSJed Brown const PetscInt dim = user->dim; 770*c4762a1bSJed Brown PetscFE fe, feAux = NULL; 771*c4762a1bSJed Brown PetscBool simplex = user->simplex; 772*c4762a1bSJed Brown MPI_Comm comm; 773*c4762a1bSJed Brown PetscErrorCode ierr; 774*c4762a1bSJed Brown 775*c4762a1bSJed Brown PetscFunctionBeginUser; 776*c4762a1bSJed Brown /* Create finite element for each field and auxiliary field */ 777*c4762a1bSJed Brown ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 778*c4762a1bSJed Brown ierr = PetscFECreateDefault(comm, dim, 1, simplex, NULL, -1, &fe);CHKERRQ(ierr); 779*c4762a1bSJed Brown ierr = PetscObjectSetName((PetscObject) fe, "potential");CHKERRQ(ierr); 780*c4762a1bSJed Brown if (user->variableCoefficient == COEFF_FIELD) { 781*c4762a1bSJed Brown ierr = PetscFECreateDefault(comm, dim, 1, simplex, "mat_", -1, &feAux);CHKERRQ(ierr); 782*c4762a1bSJed Brown ierr = PetscFECopyQuadrature(fe, feAux);CHKERRQ(ierr); 783*c4762a1bSJed Brown } else if (user->fieldBC) { 784*c4762a1bSJed Brown ierr = PetscFECreateDefault(comm, dim, 1, simplex, "bc_", -1, &feAux);CHKERRQ(ierr); 785*c4762a1bSJed Brown ierr = PetscFECopyQuadrature(fe, feAux);CHKERRQ(ierr); 786*c4762a1bSJed Brown } 787*c4762a1bSJed Brown /* Set discretization and boundary conditions for each mesh */ 788*c4762a1bSJed Brown ierr = DMSetField(dm, 0, NULL, (PetscObject) fe);CHKERRQ(ierr); 789*c4762a1bSJed Brown ierr = DMCreateDS(dm);CHKERRQ(ierr); 790*c4762a1bSJed Brown ierr = SetupProblem(dm, user);CHKERRQ(ierr); 791*c4762a1bSJed Brown while (cdm) { 792*c4762a1bSJed Brown ierr = DMCopyDisc(dm, cdm);CHKERRQ(ierr); 793*c4762a1bSJed Brown ierr = SetupAuxDM(cdm, feAux, user);CHKERRQ(ierr); 794*c4762a1bSJed Brown if (user->bcType == DIRICHLET && user->interpolate) { 795*c4762a1bSJed Brown PetscBool hasLabel; 796*c4762a1bSJed Brown 797*c4762a1bSJed Brown ierr = DMHasLabel(cdm, "marker", &hasLabel);CHKERRQ(ierr); 798*c4762a1bSJed Brown if (!hasLabel) {ierr = CreateBCLabel(cdm, "marker");CHKERRQ(ierr);} 799*c4762a1bSJed Brown } 800*c4762a1bSJed Brown ierr = DMGetCoarseDM(cdm, &cdm);CHKERRQ(ierr); 801*c4762a1bSJed Brown } 802*c4762a1bSJed Brown ierr = PetscFEDestroy(&fe);CHKERRQ(ierr); 803*c4762a1bSJed Brown ierr = PetscFEDestroy(&feAux);CHKERRQ(ierr); 804*c4762a1bSJed Brown PetscFunctionReturn(0); 805*c4762a1bSJed Brown } 806*c4762a1bSJed Brown 807*c4762a1bSJed Brown #include "petsc/private/petscimpl.h" 808*c4762a1bSJed Brown 809*c4762a1bSJed Brown /*@C 810*c4762a1bSJed Brown KSPMonitorError - Outputs the error at each iteration of an iterative solver. 811*c4762a1bSJed Brown 812*c4762a1bSJed Brown Collective on KSP 813*c4762a1bSJed Brown 814*c4762a1bSJed Brown Input Parameters: 815*c4762a1bSJed Brown + ksp - the KSP 816*c4762a1bSJed Brown . its - iteration number 817*c4762a1bSJed Brown . rnorm - 2-norm, preconditioned residual value (may be estimated). 818*c4762a1bSJed Brown - ctx - monitor context 819*c4762a1bSJed Brown 820*c4762a1bSJed Brown Level: intermediate 821*c4762a1bSJed Brown 822*c4762a1bSJed Brown .seealso: KSPMonitorSet(), KSPMonitorTrueResidualNorm(), KSPMonitorDefault() 823*c4762a1bSJed Brown @*/ 824*c4762a1bSJed Brown static PetscErrorCode KSPMonitorError(KSP ksp, PetscInt its, PetscReal rnorm, void *ctx) 825*c4762a1bSJed Brown { 826*c4762a1bSJed Brown AppCtx *user = (AppCtx *) ctx; 827*c4762a1bSJed Brown DM dm; 828*c4762a1bSJed Brown Vec du = NULL, r; 829*c4762a1bSJed Brown PetscInt level = 0; 830*c4762a1bSJed Brown PetscBool hasLevel; 831*c4762a1bSJed Brown #if defined(PETSC_HAVE_HDF5) 832*c4762a1bSJed Brown PetscViewer viewer; 833*c4762a1bSJed Brown char buf[256]; 834*c4762a1bSJed Brown #endif 835*c4762a1bSJed Brown PetscErrorCode ierr; 836*c4762a1bSJed Brown 837*c4762a1bSJed Brown PetscFunctionBegin; 838*c4762a1bSJed Brown ierr = KSPGetDM(ksp, &dm);CHKERRQ(ierr); 839*c4762a1bSJed Brown /* Calculate solution */ 840*c4762a1bSJed Brown { 841*c4762a1bSJed Brown PC pc = user->pcmg; /* The MG PC */ 842*c4762a1bSJed Brown DM fdm = NULL, cdm = NULL; 843*c4762a1bSJed Brown KSP fksp, cksp; 844*c4762a1bSJed Brown Vec fu, cu = NULL; 845*c4762a1bSJed Brown PetscInt levels, l; 846*c4762a1bSJed Brown 847*c4762a1bSJed Brown ierr = KSPBuildSolution(ksp, NULL, &du);CHKERRQ(ierr); 848*c4762a1bSJed Brown ierr = PetscObjectComposedDataGetInt((PetscObject) ksp, PetscMGLevelId, level, hasLevel);CHKERRQ(ierr); 849*c4762a1bSJed Brown ierr = PCMGGetLevels(pc, &levels);CHKERRQ(ierr); 850*c4762a1bSJed Brown ierr = PCMGGetSmoother(pc, levels-1, &fksp);CHKERRQ(ierr); 851*c4762a1bSJed Brown ierr = KSPBuildSolution(fksp, NULL, &fu);CHKERRQ(ierr); 852*c4762a1bSJed Brown for (l = levels-1; l > level; --l) { 853*c4762a1bSJed Brown Mat R; 854*c4762a1bSJed Brown Vec s; 855*c4762a1bSJed Brown 856*c4762a1bSJed Brown ierr = PCMGGetSmoother(pc, l-1, &cksp);CHKERRQ(ierr); 857*c4762a1bSJed Brown ierr = KSPGetDM(cksp, &cdm);CHKERRQ(ierr); 858*c4762a1bSJed Brown ierr = DMGetGlobalVector(cdm, &cu);CHKERRQ(ierr); 859*c4762a1bSJed Brown ierr = PCMGGetRestriction(pc, l, &R);CHKERRQ(ierr); 860*c4762a1bSJed Brown ierr = PCMGGetRScale(pc, l, &s);CHKERRQ(ierr); 861*c4762a1bSJed Brown ierr = MatRestrict(R, fu, cu);CHKERRQ(ierr); 862*c4762a1bSJed Brown ierr = VecPointwiseMult(cu, cu, s);CHKERRQ(ierr); 863*c4762a1bSJed Brown if (l < levels-1) {ierr = DMRestoreGlobalVector(fdm, &fu);CHKERRQ(ierr);} 864*c4762a1bSJed Brown fdm = cdm; 865*c4762a1bSJed Brown fu = cu; 866*c4762a1bSJed Brown } 867*c4762a1bSJed Brown if (levels-1 > level) { 868*c4762a1bSJed Brown ierr = VecAXPY(du, 1.0, cu);CHKERRQ(ierr); 869*c4762a1bSJed Brown ierr = DMRestoreGlobalVector(cdm, &cu);CHKERRQ(ierr); 870*c4762a1bSJed Brown } 871*c4762a1bSJed Brown } 872*c4762a1bSJed Brown /* Calculate error */ 873*c4762a1bSJed Brown ierr = DMGetGlobalVector(dm, &r);CHKERRQ(ierr); 874*c4762a1bSJed Brown ierr = DMProjectFunction(dm, 0.0, user->exactFuncs, NULL, INSERT_ALL_VALUES, r);CHKERRQ(ierr); 875*c4762a1bSJed Brown ierr = VecAXPY(r,-1.0,du);CHKERRQ(ierr); 876*c4762a1bSJed Brown ierr = PetscObjectSetName((PetscObject) r, "solution error");CHKERRQ(ierr); 877*c4762a1bSJed Brown /* View error */ 878*c4762a1bSJed Brown #if defined(PETSC_HAVE_HDF5) 879*c4762a1bSJed Brown ierr = PetscSNPrintf(buf, 256, "ex12-%D.h5", level);CHKERRQ(ierr); 880*c4762a1bSJed Brown ierr = PetscViewerHDF5Open(PETSC_COMM_WORLD, buf, FILE_MODE_APPEND, &viewer);CHKERRQ(ierr); 881*c4762a1bSJed Brown ierr = VecView(r, viewer);CHKERRQ(ierr); 882*c4762a1bSJed Brown ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 883*c4762a1bSJed Brown #endif 884*c4762a1bSJed Brown ierr = DMRestoreGlobalVector(dm, &r);CHKERRQ(ierr); 885*c4762a1bSJed Brown PetscFunctionReturn(0); 886*c4762a1bSJed Brown } 887*c4762a1bSJed Brown 888*c4762a1bSJed Brown /*@C 889*c4762a1bSJed Brown SNESMonitorError - Outputs the error at each iteration of an iterative solver. 890*c4762a1bSJed Brown 891*c4762a1bSJed Brown Collective on SNES 892*c4762a1bSJed Brown 893*c4762a1bSJed Brown Input Parameters: 894*c4762a1bSJed Brown + snes - the SNES 895*c4762a1bSJed Brown . its - iteration number 896*c4762a1bSJed Brown . rnorm - 2-norm of residual 897*c4762a1bSJed Brown - ctx - user context 898*c4762a1bSJed Brown 899*c4762a1bSJed Brown Level: intermediate 900*c4762a1bSJed Brown 901*c4762a1bSJed Brown .seealso: SNESMonitorDefault(), SNESMonitorSet(), SNESMonitorSolution() 902*c4762a1bSJed Brown @*/ 903*c4762a1bSJed Brown static PetscErrorCode SNESMonitorError(SNES snes, PetscInt its, PetscReal rnorm, void *ctx) 904*c4762a1bSJed Brown { 905*c4762a1bSJed Brown AppCtx *user = (AppCtx *) ctx; 906*c4762a1bSJed Brown DM dm; 907*c4762a1bSJed Brown Vec u, r; 908*c4762a1bSJed Brown PetscInt level = -1; 909*c4762a1bSJed Brown PetscBool hasLevel; 910*c4762a1bSJed Brown #if defined(PETSC_HAVE_HDF5) 911*c4762a1bSJed Brown PetscViewer viewer; 912*c4762a1bSJed Brown #endif 913*c4762a1bSJed Brown char buf[256]; 914*c4762a1bSJed Brown PetscErrorCode ierr; 915*c4762a1bSJed Brown 916*c4762a1bSJed Brown PetscFunctionBegin; 917*c4762a1bSJed Brown ierr = SNESGetDM(snes, &dm);CHKERRQ(ierr); 918*c4762a1bSJed Brown /* Calculate error */ 919*c4762a1bSJed Brown ierr = SNESGetSolution(snes, &u);CHKERRQ(ierr); 920*c4762a1bSJed Brown ierr = DMGetGlobalVector(dm, &r);CHKERRQ(ierr); 921*c4762a1bSJed Brown ierr = PetscObjectSetName((PetscObject) r, "solution error");CHKERRQ(ierr); 922*c4762a1bSJed Brown ierr = DMProjectFunction(dm, 0.0, user->exactFuncs, NULL, INSERT_ALL_VALUES, r);CHKERRQ(ierr); 923*c4762a1bSJed Brown ierr = VecAXPY(r, -1.0, u);CHKERRQ(ierr); 924*c4762a1bSJed Brown /* View error */ 925*c4762a1bSJed Brown ierr = PetscObjectComposedDataGetInt((PetscObject) snes, PetscMGLevelId, level, hasLevel);CHKERRQ(ierr); 926*c4762a1bSJed Brown ierr = PetscSNPrintf(buf, 256, "ex12-%D.h5", level);CHKERRQ(ierr); 927*c4762a1bSJed Brown #if defined(PETSC_HAVE_HDF5) 928*c4762a1bSJed Brown ierr = PetscViewerHDF5Open(PETSC_COMM_WORLD, buf, FILE_MODE_APPEND, &viewer);CHKERRQ(ierr); 929*c4762a1bSJed Brown ierr = VecView(r, viewer);CHKERRQ(ierr); 930*c4762a1bSJed Brown ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 931*c4762a1bSJed Brown /* Cleanup */ 932*c4762a1bSJed Brown ierr = DMRestoreGlobalVector(dm, &r);CHKERRQ(ierr); 933*c4762a1bSJed Brown PetscFunctionReturn(0); 934*c4762a1bSJed Brown #else 935*c4762a1bSJed Brown SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_SUP,"You need to configure with --download-hdf5"); 936*c4762a1bSJed Brown #endif 937*c4762a1bSJed Brown } 938*c4762a1bSJed Brown 939*c4762a1bSJed Brown int main(int argc, char **argv) 940*c4762a1bSJed Brown { 941*c4762a1bSJed Brown DM dm; /* Problem specification */ 942*c4762a1bSJed Brown SNES snes; /* nonlinear solver */ 943*c4762a1bSJed Brown Vec u; /* solution vector */ 944*c4762a1bSJed Brown Mat A,J; /* Jacobian matrix */ 945*c4762a1bSJed Brown MatNullSpace nullSpace; /* May be necessary for Neumann conditions */ 946*c4762a1bSJed Brown AppCtx user; /* user-defined work context */ 947*c4762a1bSJed Brown JacActionCtx userJ; /* context for Jacobian MF action */ 948*c4762a1bSJed Brown PetscReal error = 0.0; /* L_2 error in the solution */ 949*c4762a1bSJed Brown PetscBool isFAS; 950*c4762a1bSJed Brown PetscErrorCode ierr; 951*c4762a1bSJed Brown 952*c4762a1bSJed Brown ierr = PetscInitialize(&argc, &argv, NULL,help);if (ierr) return ierr; 953*c4762a1bSJed Brown ierr = ProcessOptions(PETSC_COMM_WORLD, &user);CHKERRQ(ierr); 954*c4762a1bSJed Brown ierr = SNESCreate(PETSC_COMM_WORLD, &snes);CHKERRQ(ierr); 955*c4762a1bSJed Brown ierr = CreateMesh(PETSC_COMM_WORLD, &user, &dm);CHKERRQ(ierr); 956*c4762a1bSJed Brown ierr = SNESSetDM(snes, dm);CHKERRQ(ierr); 957*c4762a1bSJed Brown ierr = DMSetApplicationContext(dm, &user);CHKERRQ(ierr); 958*c4762a1bSJed Brown 959*c4762a1bSJed Brown ierr = PetscMalloc2(1, &user.exactFuncs, 1, &user.exactFields);CHKERRQ(ierr); 960*c4762a1bSJed Brown ierr = SetupDiscretization(dm, &user);CHKERRQ(ierr); 961*c4762a1bSJed Brown 962*c4762a1bSJed Brown ierr = DMCreateGlobalVector(dm, &u);CHKERRQ(ierr); 963*c4762a1bSJed Brown ierr = PetscObjectSetName((PetscObject) u, "potential");CHKERRQ(ierr); 964*c4762a1bSJed Brown 965*c4762a1bSJed Brown ierr = DMCreateMatrix(dm, &J);CHKERRQ(ierr); 966*c4762a1bSJed Brown if (user.jacobianMF) { 967*c4762a1bSJed Brown PetscInt M, m, N, n; 968*c4762a1bSJed Brown 969*c4762a1bSJed Brown ierr = MatGetSize(J, &M, &N);CHKERRQ(ierr); 970*c4762a1bSJed Brown ierr = MatGetLocalSize(J, &m, &n);CHKERRQ(ierr); 971*c4762a1bSJed Brown ierr = MatCreate(PETSC_COMM_WORLD, &A);CHKERRQ(ierr); 972*c4762a1bSJed Brown ierr = MatSetSizes(A, m, n, M, N);CHKERRQ(ierr); 973*c4762a1bSJed Brown ierr = MatSetType(A, MATSHELL);CHKERRQ(ierr); 974*c4762a1bSJed Brown ierr = MatSetUp(A);CHKERRQ(ierr); 975*c4762a1bSJed Brown #if 0 976*c4762a1bSJed Brown ierr = MatShellSetOperation(A, MATOP_MULT, (void (*)(void))FormJacobianAction);CHKERRQ(ierr); 977*c4762a1bSJed Brown #endif 978*c4762a1bSJed Brown 979*c4762a1bSJed Brown userJ.dm = dm; 980*c4762a1bSJed Brown userJ.J = J; 981*c4762a1bSJed Brown userJ.user = &user; 982*c4762a1bSJed Brown 983*c4762a1bSJed Brown ierr = DMCreateLocalVector(dm, &userJ.u);CHKERRQ(ierr); 984*c4762a1bSJed Brown if (user.fieldBC) {ierr = DMProjectFieldLocal(dm, 0.0, userJ.u, user.exactFields, INSERT_BC_VALUES, userJ.u);CHKERRQ(ierr);} 985*c4762a1bSJed Brown else {ierr = DMProjectFunctionLocal(dm, 0.0, user.exactFuncs, NULL, INSERT_BC_VALUES, userJ.u);CHKERRQ(ierr);} 986*c4762a1bSJed Brown ierr = MatShellSetContext(A, &userJ);CHKERRQ(ierr); 987*c4762a1bSJed Brown } else { 988*c4762a1bSJed Brown A = J; 989*c4762a1bSJed Brown } 990*c4762a1bSJed Brown 991*c4762a1bSJed Brown nullSpace = NULL; 992*c4762a1bSJed Brown if (user.bcType != DIRICHLET) { 993*c4762a1bSJed Brown ierr = MatNullSpaceCreate(PetscObjectComm((PetscObject) dm), PETSC_TRUE, 0, NULL, &nullSpace);CHKERRQ(ierr); 994*c4762a1bSJed Brown ierr = MatSetNullSpace(A, nullSpace);CHKERRQ(ierr); 995*c4762a1bSJed Brown } 996*c4762a1bSJed Brown 997*c4762a1bSJed Brown ierr = DMPlexSetSNESLocalFEM(dm,&user,&user,&user);CHKERRQ(ierr); 998*c4762a1bSJed Brown ierr = SNESSetJacobian(snes, A, J, NULL, NULL);CHKERRQ(ierr); 999*c4762a1bSJed Brown 1000*c4762a1bSJed Brown ierr = SNESSetFromOptions(snes);CHKERRQ(ierr); 1001*c4762a1bSJed Brown 1002*c4762a1bSJed Brown if (user.fieldBC) {ierr = DMProjectField(dm, 0.0, u, user.exactFields, INSERT_ALL_VALUES, u);CHKERRQ(ierr);} 1003*c4762a1bSJed Brown else {ierr = DMProjectFunction(dm, 0.0, user.exactFuncs, NULL, INSERT_ALL_VALUES, u);CHKERRQ(ierr);} 1004*c4762a1bSJed Brown if (user.restart) { 1005*c4762a1bSJed Brown #if defined(PETSC_HAVE_HDF5) 1006*c4762a1bSJed Brown PetscViewer viewer; 1007*c4762a1bSJed Brown 1008*c4762a1bSJed Brown ierr = PetscViewerCreate(PETSC_COMM_WORLD, &viewer);CHKERRQ(ierr); 1009*c4762a1bSJed Brown ierr = PetscViewerSetType(viewer, PETSCVIEWERHDF5);CHKERRQ(ierr); 1010*c4762a1bSJed Brown ierr = PetscViewerFileSetMode(viewer, FILE_MODE_READ);CHKERRQ(ierr); 1011*c4762a1bSJed Brown ierr = PetscViewerFileSetName(viewer, user.filename);CHKERRQ(ierr); 1012*c4762a1bSJed Brown ierr = PetscViewerHDF5PushGroup(viewer, "/fields");CHKERRQ(ierr); 1013*c4762a1bSJed Brown ierr = VecLoad(u, viewer);CHKERRQ(ierr); 1014*c4762a1bSJed Brown ierr = PetscViewerHDF5PopGroup(viewer);CHKERRQ(ierr); 1015*c4762a1bSJed Brown ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 1016*c4762a1bSJed Brown #endif 1017*c4762a1bSJed Brown } 1018*c4762a1bSJed Brown if (user.showInitial) { 1019*c4762a1bSJed Brown Vec lv; 1020*c4762a1bSJed Brown ierr = DMGetLocalVector(dm, &lv);CHKERRQ(ierr); 1021*c4762a1bSJed Brown ierr = DMGlobalToLocalBegin(dm, u, INSERT_VALUES, lv);CHKERRQ(ierr); 1022*c4762a1bSJed Brown ierr = DMGlobalToLocalEnd(dm, u, INSERT_VALUES, lv);CHKERRQ(ierr); 1023*c4762a1bSJed Brown ierr = DMPrintLocalVec(dm, "Local function", 1.0e-10, lv);CHKERRQ(ierr); 1024*c4762a1bSJed Brown ierr = DMRestoreLocalVector(dm, &lv);CHKERRQ(ierr); 1025*c4762a1bSJed Brown } 1026*c4762a1bSJed Brown if (user.viewHierarchy) { 1027*c4762a1bSJed Brown SNES lsnes; 1028*c4762a1bSJed Brown KSP ksp; 1029*c4762a1bSJed Brown PC pc; 1030*c4762a1bSJed Brown PetscInt numLevels, l; 1031*c4762a1bSJed Brown PetscBool isMG; 1032*c4762a1bSJed Brown 1033*c4762a1bSJed Brown ierr = PetscObjectTypeCompare((PetscObject) snes, SNESFAS, &isFAS);CHKERRQ(ierr); 1034*c4762a1bSJed Brown if (isFAS) { 1035*c4762a1bSJed Brown ierr = SNESFASGetLevels(snes, &numLevels);CHKERRQ(ierr); 1036*c4762a1bSJed Brown for (l = 0; l < numLevels; ++l) { 1037*c4762a1bSJed Brown ierr = SNESFASGetCycleSNES(snes, l, &lsnes);CHKERRQ(ierr); 1038*c4762a1bSJed Brown ierr = SNESMonitorSet(lsnes, SNESMonitorError, &user, NULL);CHKERRQ(ierr); 1039*c4762a1bSJed Brown } 1040*c4762a1bSJed Brown } else { 1041*c4762a1bSJed Brown ierr = SNESGetKSP(snes, &ksp);CHKERRQ(ierr); 1042*c4762a1bSJed Brown ierr = KSPGetPC(ksp, &pc);CHKERRQ(ierr); 1043*c4762a1bSJed Brown ierr = PetscObjectTypeCompare((PetscObject) pc, PCMG, &isMG);CHKERRQ(ierr); 1044*c4762a1bSJed Brown if (isMG) { 1045*c4762a1bSJed Brown user.pcmg = pc; 1046*c4762a1bSJed Brown ierr = PCMGGetLevels(pc, &numLevels);CHKERRQ(ierr); 1047*c4762a1bSJed Brown for (l = 0; l < numLevels; ++l) { 1048*c4762a1bSJed Brown ierr = PCMGGetSmootherDown(pc, l, &ksp);CHKERRQ(ierr); 1049*c4762a1bSJed Brown ierr = KSPMonitorSet(ksp, KSPMonitorError, &user, NULL);CHKERRQ(ierr); 1050*c4762a1bSJed Brown } 1051*c4762a1bSJed Brown } 1052*c4762a1bSJed Brown } 1053*c4762a1bSJed Brown } 1054*c4762a1bSJed Brown if (user.runType == RUN_FULL || user.runType == RUN_EXACT) { 1055*c4762a1bSJed Brown PetscErrorCode (*initialGuess[1])(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar u[], void *ctx) = {zero}; 1056*c4762a1bSJed Brown 1057*c4762a1bSJed Brown if (user.nonzInit) initialGuess[0] = ecks; 1058*c4762a1bSJed Brown if (user.runType == RUN_FULL) { 1059*c4762a1bSJed Brown ierr = DMProjectFunction(dm, 0.0, initialGuess, NULL, INSERT_VALUES, u);CHKERRQ(ierr); 1060*c4762a1bSJed Brown } 1061*c4762a1bSJed Brown if (user.debug) { 1062*c4762a1bSJed Brown ierr = PetscPrintf(PETSC_COMM_WORLD, "Initial guess\n");CHKERRQ(ierr); 1063*c4762a1bSJed Brown ierr = VecView(u, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 1064*c4762a1bSJed Brown } 1065*c4762a1bSJed Brown ierr = VecViewFromOptions(u, NULL, "-guess_vec_view");CHKERRQ(ierr); 1066*c4762a1bSJed Brown ierr = SNESSolve(snes, NULL, u);CHKERRQ(ierr); 1067*c4762a1bSJed Brown ierr = SNESGetSolution(snes, &u);CHKERRQ(ierr); 1068*c4762a1bSJed Brown ierr = SNESGetDM(snes, &dm);CHKERRQ(ierr); 1069*c4762a1bSJed Brown 1070*c4762a1bSJed Brown if (user.showSolution) { 1071*c4762a1bSJed Brown ierr = PetscPrintf(PETSC_COMM_WORLD, "Solution\n");CHKERRQ(ierr); 1072*c4762a1bSJed Brown ierr = VecChop(u, 3.0e-9);CHKERRQ(ierr); 1073*c4762a1bSJed Brown ierr = VecView(u, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 1074*c4762a1bSJed Brown } 1075*c4762a1bSJed Brown ierr = VecViewFromOptions(u, NULL, "-vec_view");CHKERRQ(ierr); 1076*c4762a1bSJed Brown } else if (user.runType == RUN_PERF) { 1077*c4762a1bSJed Brown Vec r; 1078*c4762a1bSJed Brown PetscReal res = 0.0; 1079*c4762a1bSJed Brown 1080*c4762a1bSJed Brown ierr = SNESGetFunction(snes, &r, NULL, NULL);CHKERRQ(ierr); 1081*c4762a1bSJed Brown ierr = SNESComputeFunction(snes, u, r);CHKERRQ(ierr); 1082*c4762a1bSJed Brown ierr = PetscPrintf(PETSC_COMM_WORLD, "Initial Residual\n");CHKERRQ(ierr); 1083*c4762a1bSJed Brown ierr = VecChop(r, 1.0e-10);CHKERRQ(ierr); 1084*c4762a1bSJed Brown ierr = VecNorm(r, NORM_2, &res);CHKERRQ(ierr); 1085*c4762a1bSJed Brown ierr = PetscPrintf(PETSC_COMM_WORLD, "L_2 Residual: %g\n", (double)res);CHKERRQ(ierr); 1086*c4762a1bSJed Brown } else { 1087*c4762a1bSJed Brown Vec r; 1088*c4762a1bSJed Brown PetscReal res = 0.0, tol = 1.0e-11; 1089*c4762a1bSJed Brown 1090*c4762a1bSJed Brown /* Check discretization error */ 1091*c4762a1bSJed Brown ierr = SNESGetFunction(snes, &r, NULL, NULL);CHKERRQ(ierr); 1092*c4762a1bSJed Brown ierr = PetscPrintf(PETSC_COMM_WORLD, "Initial guess\n");CHKERRQ(ierr); 1093*c4762a1bSJed Brown if (!user.quiet) {ierr = VecView(u, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);} 1094*c4762a1bSJed Brown ierr = DMComputeL2Diff(dm, 0.0, user.exactFuncs, NULL, u, &error);CHKERRQ(ierr); 1095*c4762a1bSJed Brown if (error < tol) {ierr = PetscPrintf(PETSC_COMM_WORLD, "L_2 Error: < %2.1e\n", (double)tol);CHKERRQ(ierr);} 1096*c4762a1bSJed Brown else {ierr = PetscPrintf(PETSC_COMM_WORLD, "L_2 Error: %g\n", (double)error);CHKERRQ(ierr);} 1097*c4762a1bSJed Brown /* Check residual */ 1098*c4762a1bSJed Brown ierr = SNESComputeFunction(snes, u, r);CHKERRQ(ierr); 1099*c4762a1bSJed Brown ierr = PetscPrintf(PETSC_COMM_WORLD, "Initial Residual\n");CHKERRQ(ierr); 1100*c4762a1bSJed Brown ierr = VecChop(r, 1.0e-10);CHKERRQ(ierr); 1101*c4762a1bSJed Brown if (!user.quiet) {ierr = VecView(r, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);} 1102*c4762a1bSJed Brown ierr = VecNorm(r, NORM_2, &res);CHKERRQ(ierr); 1103*c4762a1bSJed Brown ierr = PetscPrintf(PETSC_COMM_WORLD, "L_2 Residual: %g\n", (double)res);CHKERRQ(ierr); 1104*c4762a1bSJed Brown /* Check Jacobian */ 1105*c4762a1bSJed Brown { 1106*c4762a1bSJed Brown Vec b; 1107*c4762a1bSJed Brown 1108*c4762a1bSJed Brown ierr = SNESComputeJacobian(snes, u, A, A);CHKERRQ(ierr); 1109*c4762a1bSJed Brown ierr = VecDuplicate(u, &b);CHKERRQ(ierr); 1110*c4762a1bSJed Brown ierr = VecSet(r, 0.0);CHKERRQ(ierr); 1111*c4762a1bSJed Brown ierr = SNESComputeFunction(snes, r, b);CHKERRQ(ierr); 1112*c4762a1bSJed Brown ierr = MatMult(A, u, r);CHKERRQ(ierr); 1113*c4762a1bSJed Brown ierr = VecAXPY(r, 1.0, b);CHKERRQ(ierr); 1114*c4762a1bSJed Brown ierr = PetscPrintf(PETSC_COMM_WORLD, "Au - b = Au + F(0)\n");CHKERRQ(ierr); 1115*c4762a1bSJed Brown ierr = VecChop(r, 1.0e-10);CHKERRQ(ierr); 1116*c4762a1bSJed Brown if (!user.quiet) {ierr = VecView(r, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);} 1117*c4762a1bSJed Brown ierr = VecNorm(r, NORM_2, &res);CHKERRQ(ierr); 1118*c4762a1bSJed Brown ierr = PetscPrintf(PETSC_COMM_WORLD, "Linear L_2 Residual: %g\n", (double)res);CHKERRQ(ierr); 1119*c4762a1bSJed Brown /* check solver */ 1120*c4762a1bSJed Brown if (user.checkksp) { 1121*c4762a1bSJed Brown KSP ksp; 1122*c4762a1bSJed Brown 1123*c4762a1bSJed Brown if (nullSpace) { 1124*c4762a1bSJed Brown ierr = MatNullSpaceRemove(nullSpace, u);CHKERRQ(ierr); 1125*c4762a1bSJed Brown } 1126*c4762a1bSJed Brown ierr = SNESComputeJacobian(snes, u, A, J);CHKERRQ(ierr); 1127*c4762a1bSJed Brown ierr = MatMult(A, u, b);CHKERRQ(ierr); 1128*c4762a1bSJed Brown ierr = SNESGetKSP(snes, &ksp);CHKERRQ(ierr); 1129*c4762a1bSJed Brown ierr = KSPSetOperators(ksp, A, J);CHKERRQ(ierr); 1130*c4762a1bSJed Brown ierr = KSPSolve(ksp, b, r);CHKERRQ(ierr); 1131*c4762a1bSJed Brown ierr = VecAXPY(r, -1.0, u);CHKERRQ(ierr); 1132*c4762a1bSJed Brown ierr = VecNorm(r, NORM_2, &res);CHKERRQ(ierr); 1133*c4762a1bSJed Brown ierr = PetscPrintf(PETSC_COMM_WORLD, "KSP Error: %g\n", (double)res);CHKERRQ(ierr); 1134*c4762a1bSJed Brown } 1135*c4762a1bSJed Brown ierr = VecDestroy(&b);CHKERRQ(ierr); 1136*c4762a1bSJed Brown } 1137*c4762a1bSJed Brown } 1138*c4762a1bSJed Brown ierr = VecViewFromOptions(u, NULL, "-vec_view");CHKERRQ(ierr); 1139*c4762a1bSJed Brown 1140*c4762a1bSJed Brown if (user.bdIntegral) { 1141*c4762a1bSJed Brown DMLabel label; 1142*c4762a1bSJed Brown PetscInt id = 1; 1143*c4762a1bSJed Brown PetscScalar bdInt = 0.0; 1144*c4762a1bSJed Brown PetscReal exact = 3.3333333333; 1145*c4762a1bSJed Brown 1146*c4762a1bSJed Brown ierr = DMGetLabel(dm, "marker", &label);CHKERRQ(ierr); 1147*c4762a1bSJed Brown ierr = DMPlexComputeBdIntegral(dm, u, label, 1, &id, bd_integral_2d, &bdInt, NULL);CHKERRQ(ierr); 1148*c4762a1bSJed Brown ierr = PetscPrintf(PETSC_COMM_WORLD, "Solution boundary integral: %.4g\n", (double) PetscAbsScalar(bdInt));CHKERRQ(ierr); 1149*c4762a1bSJed Brown if (PetscAbsReal(PetscAbsScalar(bdInt) - exact) > PETSC_SQRT_MACHINE_EPSILON) SETERRQ2(PETSC_COMM_WORLD, PETSC_ERR_PLIB, "Invalid boundary integral %g != %g", (double) PetscAbsScalar(bdInt), (double)exact); 1150*c4762a1bSJed Brown } 1151*c4762a1bSJed Brown 1152*c4762a1bSJed Brown ierr = MatNullSpaceDestroy(&nullSpace);CHKERRQ(ierr); 1153*c4762a1bSJed Brown if (user.jacobianMF) {ierr = VecDestroy(&userJ.u);CHKERRQ(ierr);} 1154*c4762a1bSJed Brown if (A != J) {ierr = MatDestroy(&A);CHKERRQ(ierr);} 1155*c4762a1bSJed Brown ierr = MatDestroy(&J);CHKERRQ(ierr); 1156*c4762a1bSJed Brown ierr = VecDestroy(&u);CHKERRQ(ierr); 1157*c4762a1bSJed Brown ierr = SNESDestroy(&snes);CHKERRQ(ierr); 1158*c4762a1bSJed Brown ierr = DMDestroy(&dm);CHKERRQ(ierr); 1159*c4762a1bSJed Brown ierr = PetscFree2(user.exactFuncs, user.exactFields);CHKERRQ(ierr); 1160*c4762a1bSJed Brown ierr = PetscFinalize(); 1161*c4762a1bSJed Brown return ierr; 1162*c4762a1bSJed Brown } 1163*c4762a1bSJed Brown 1164*c4762a1bSJed Brown /*TEST 1165*c4762a1bSJed Brown # 2D serial P1 test 0-4 1166*c4762a1bSJed Brown test: 1167*c4762a1bSJed Brown suffix: 2d_p1_0 1168*c4762a1bSJed Brown requires: triangle 1169*c4762a1bSJed Brown args: -run_type test -refinement_limit 0.0 -bc_type dirichlet -interpolate 0 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1 1170*c4762a1bSJed Brown 1171*c4762a1bSJed Brown test: 1172*c4762a1bSJed Brown suffix: 2d_p1_1 1173*c4762a1bSJed Brown requires: triangle 1174*c4762a1bSJed Brown args: -run_type test -refinement_limit 0.0 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1 1175*c4762a1bSJed Brown 1176*c4762a1bSJed Brown test: 1177*c4762a1bSJed Brown suffix: 2d_p1_2 1178*c4762a1bSJed Brown requires: triangle 1179*c4762a1bSJed Brown args: -run_type test -refinement_limit 0.0625 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1 1180*c4762a1bSJed Brown 1181*c4762a1bSJed Brown test: 1182*c4762a1bSJed Brown suffix: 2d_p1_neumann_0 1183*c4762a1bSJed Brown requires: triangle 1184*c4762a1bSJed Brown args: -run_type test -refinement_limit 0.0 -bc_type neumann -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1 -dm_view ascii::ascii_info_detail 1185*c4762a1bSJed Brown 1186*c4762a1bSJed Brown test: 1187*c4762a1bSJed Brown suffix: 2d_p1_neumann_1 1188*c4762a1bSJed Brown requires: triangle 1189*c4762a1bSJed Brown args: -run_type test -refinement_limit 0.0625 -bc_type neumann -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1 1190*c4762a1bSJed Brown 1191*c4762a1bSJed Brown # 2D serial P2 test 5-8 1192*c4762a1bSJed Brown test: 1193*c4762a1bSJed Brown suffix: 2d_p2_0 1194*c4762a1bSJed Brown requires: triangle 1195*c4762a1bSJed Brown args: -run_type test -refinement_limit 0.0 -bc_type dirichlet -interpolate 1 -petscspace_degree 2 -show_initial -dm_plex_print_fem 1 1196*c4762a1bSJed Brown 1197*c4762a1bSJed Brown test: 1198*c4762a1bSJed Brown suffix: 2d_p2_1 1199*c4762a1bSJed Brown requires: triangle 1200*c4762a1bSJed Brown args: -run_type test -refinement_limit 0.0625 -bc_type dirichlet -interpolate 1 -petscspace_degree 2 -show_initial -dm_plex_print_fem 1 1201*c4762a1bSJed Brown 1202*c4762a1bSJed Brown test: 1203*c4762a1bSJed Brown suffix: 2d_p2_neumann_0 1204*c4762a1bSJed Brown requires: triangle 1205*c4762a1bSJed Brown args: -run_type test -refinement_limit 0.0 -bc_type neumann -interpolate 1 -petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -dm_view ascii::ascii_info_detail 1206*c4762a1bSJed Brown 1207*c4762a1bSJed Brown test: 1208*c4762a1bSJed Brown suffix: 2d_p2_neumann_1 1209*c4762a1bSJed Brown requires: triangle 1210*c4762a1bSJed Brown args: -run_type test -refinement_limit 0.0625 -bc_type neumann -interpolate 1 -petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -dm_view ascii::ascii_info_detail 1211*c4762a1bSJed Brown 1212*c4762a1bSJed Brown test: 1213*c4762a1bSJed Brown suffix: bd_int_0 1214*c4762a1bSJed Brown requires: triangle 1215*c4762a1bSJed Brown args: -run_type test -bc_type dirichlet -interpolate 1 -petscspace_degree 2 -bd_integral -dm_view -quiet 1216*c4762a1bSJed Brown 1217*c4762a1bSJed Brown test: 1218*c4762a1bSJed Brown suffix: bd_int_1 1219*c4762a1bSJed Brown requires: triangle 1220*c4762a1bSJed Brown args: -run_type test -dm_refine 2 -bc_type dirichlet -interpolate 1 -petscspace_degree 2 -bd_integral -dm_view -quiet 1221*c4762a1bSJed Brown 1222*c4762a1bSJed Brown # 3D serial P1 test 9-12 1223*c4762a1bSJed Brown test: 1224*c4762a1bSJed Brown suffix: 3d_p1_0 1225*c4762a1bSJed Brown requires: ctetgen 1226*c4762a1bSJed Brown args: -run_type test -dim 3 -refinement_limit 0.0 -bc_type dirichlet -interpolate 0 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1 -dm_view -cells 1,1,1 1227*c4762a1bSJed Brown 1228*c4762a1bSJed Brown test: 1229*c4762a1bSJed Brown suffix: 3d_p1_1 1230*c4762a1bSJed Brown requires: ctetgen 1231*c4762a1bSJed Brown args: -run_type test -dim 3 -refinement_limit 0.0 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1 -dm_view -cells 1,1,1 1232*c4762a1bSJed Brown 1233*c4762a1bSJed Brown test: 1234*c4762a1bSJed Brown suffix: 3d_p1_2 1235*c4762a1bSJed Brown requires: ctetgen 1236*c4762a1bSJed Brown args: -run_type test -dim 3 -refinement_limit 0.0125 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1 -dm_view -cells 1,1,1 1237*c4762a1bSJed Brown 1238*c4762a1bSJed Brown test: 1239*c4762a1bSJed Brown suffix: 3d_p1_neumann_0 1240*c4762a1bSJed Brown requires: ctetgen 1241*c4762a1bSJed Brown args: -run_type test -dim 3 -bc_type neumann -interpolate 1 -petscspace_degree 1 -snes_fd -show_initial -dm_plex_print_fem 1 -dm_view -cells 1,1,1 1242*c4762a1bSJed Brown 1243*c4762a1bSJed Brown # Analytic variable coefficient 13-20 1244*c4762a1bSJed Brown test: 1245*c4762a1bSJed Brown suffix: 13 1246*c4762a1bSJed Brown requires: triangle 1247*c4762a1bSJed Brown args: -run_type test -refinement_limit 0.0 -variable_coefficient analytic -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1 1248*c4762a1bSJed Brown test: 1249*c4762a1bSJed Brown suffix: 14 1250*c4762a1bSJed Brown requires: triangle 1251*c4762a1bSJed Brown args: -run_type test -refinement_limit 0.0625 -variable_coefficient analytic -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1 1252*c4762a1bSJed Brown test: 1253*c4762a1bSJed Brown suffix: 15 1254*c4762a1bSJed Brown requires: triangle 1255*c4762a1bSJed Brown args: -run_type test -refinement_limit 0.0 -variable_coefficient analytic -interpolate 1 -petscspace_degree 2 -show_initial -dm_plex_print_fem 1 1256*c4762a1bSJed Brown test: 1257*c4762a1bSJed Brown suffix: 16 1258*c4762a1bSJed Brown requires: triangle 1259*c4762a1bSJed Brown args: -run_type test -refinement_limit 0.0625 -variable_coefficient analytic -interpolate 1 -petscspace_degree 2 -show_initial -dm_plex_print_fem 1 1260*c4762a1bSJed Brown test: 1261*c4762a1bSJed Brown suffix: 17 1262*c4762a1bSJed Brown requires: ctetgen 1263*c4762a1bSJed Brown args: -run_type test -dim 3 -refinement_limit 0.0 -variable_coefficient analytic -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1 -cells 1,1,1 1264*c4762a1bSJed Brown 1265*c4762a1bSJed Brown test: 1266*c4762a1bSJed Brown suffix: 18 1267*c4762a1bSJed Brown requires: ctetgen 1268*c4762a1bSJed Brown args: -run_type test -dim 3 -refinement_limit 0.0125 -variable_coefficient analytic -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1 -cells 1,1,1 1269*c4762a1bSJed Brown 1270*c4762a1bSJed Brown test: 1271*c4762a1bSJed Brown suffix: 19 1272*c4762a1bSJed Brown requires: ctetgen 1273*c4762a1bSJed Brown args: -run_type test -dim 3 -refinement_limit 0.0 -variable_coefficient analytic -interpolate 1 -petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -cells 1,1,1 1274*c4762a1bSJed Brown 1275*c4762a1bSJed Brown test: 1276*c4762a1bSJed Brown suffix: 20 1277*c4762a1bSJed Brown requires: ctetgen 1278*c4762a1bSJed Brown args: -run_type test -dim 3 -refinement_limit 0.0125 -variable_coefficient analytic -interpolate 1 -petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -cells 1,1,1 1279*c4762a1bSJed Brown 1280*c4762a1bSJed Brown # P1 variable coefficient 21-28 1281*c4762a1bSJed Brown test: 1282*c4762a1bSJed Brown suffix: 21 1283*c4762a1bSJed Brown requires: triangle 1284*c4762a1bSJed Brown args: -run_type test -refinement_limit 0.0 -variable_coefficient field -interpolate 1 -petscspace_degree 1 -mat_petscspace_degree 1 -show_initial -dm_plex_print_fem 1 1285*c4762a1bSJed Brown 1286*c4762a1bSJed Brown test: 1287*c4762a1bSJed Brown suffix: 22 1288*c4762a1bSJed Brown requires: triangle 1289*c4762a1bSJed Brown args: -run_type test -refinement_limit 0.0625 -variable_coefficient field -interpolate 1 -petscspace_degree 1 -mat_petscspace_degree 1 -show_initial -dm_plex_print_fem 1 1290*c4762a1bSJed Brown 1291*c4762a1bSJed Brown test: 1292*c4762a1bSJed Brown suffix: 23 1293*c4762a1bSJed Brown requires: triangle 1294*c4762a1bSJed Brown args: -run_type test -refinement_limit 0.0 -variable_coefficient field -interpolate 1 -petscspace_degree 2 -mat_petscspace_degree 1 -show_initial -dm_plex_print_fem 1 1295*c4762a1bSJed Brown 1296*c4762a1bSJed Brown test: 1297*c4762a1bSJed Brown suffix: 24 1298*c4762a1bSJed Brown requires: triangle 1299*c4762a1bSJed Brown args: -run_type test -refinement_limit 0.0625 -variable_coefficient field -interpolate 1 -petscspace_degree 2 -mat_petscspace_degree 1 -show_initial -dm_plex_print_fem 1 1300*c4762a1bSJed Brown 1301*c4762a1bSJed Brown test: 1302*c4762a1bSJed Brown suffix: 25 1303*c4762a1bSJed Brown requires: ctetgen 1304*c4762a1bSJed Brown args: -run_type test -dim 3 -refinement_limit 0.0 -variable_coefficient field -interpolate 1 -petscspace_degree 1 -mat_petscspace_degree 1 -show_initial -dm_plex_print_fem 1 -cells 1,1,1 1305*c4762a1bSJed Brown 1306*c4762a1bSJed Brown test: 1307*c4762a1bSJed Brown suffix: 26 1308*c4762a1bSJed Brown requires: ctetgen 1309*c4762a1bSJed Brown args: -run_type test -dim 3 -refinement_limit 0.0125 -variable_coefficient field -interpolate 1 -petscspace_degree 1 -mat_petscspace_degree 1 -show_initial -dm_plex_print_fem 1 -cells 1,1,1 1310*c4762a1bSJed Brown 1311*c4762a1bSJed Brown test: 1312*c4762a1bSJed Brown suffix: 27 1313*c4762a1bSJed Brown requires: ctetgen 1314*c4762a1bSJed Brown args: -run_type test -dim 3 -refinement_limit 0.0 -variable_coefficient field -interpolate 1 -petscspace_degree 2 -mat_petscspace_degree 1 -show_initial -dm_plex_print_fem 1 -cells 1,1,1 1315*c4762a1bSJed Brown 1316*c4762a1bSJed Brown test: 1317*c4762a1bSJed Brown suffix: 28 1318*c4762a1bSJed Brown requires: ctetgen 1319*c4762a1bSJed Brown args: -run_type test -dim 3 -refinement_limit 0.0125 -variable_coefficient field -interpolate 1 -petscspace_degree 2 -mat_petscspace_degree 1 -show_initial -dm_plex_print_fem 1 -cells 1,1,1 1320*c4762a1bSJed Brown 1321*c4762a1bSJed Brown # P0 variable coefficient 29-36 1322*c4762a1bSJed Brown test: 1323*c4762a1bSJed Brown suffix: 29 1324*c4762a1bSJed Brown requires: triangle 1325*c4762a1bSJed Brown args: -run_type test -refinement_limit 0.0 -variable_coefficient field -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1 1326*c4762a1bSJed Brown 1327*c4762a1bSJed Brown test: 1328*c4762a1bSJed Brown suffix: 30 1329*c4762a1bSJed Brown requires: triangle 1330*c4762a1bSJed Brown args: -run_type test -refinement_limit 0.0625 -variable_coefficient field -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1 1331*c4762a1bSJed Brown 1332*c4762a1bSJed Brown test: 1333*c4762a1bSJed Brown suffix: 31 1334*c4762a1bSJed Brown requires: triangle 1335*c4762a1bSJed Brown args: -run_type test -refinement_limit 0.0 -variable_coefficient field -interpolate 1 -petscspace_degree 2 -show_initial -dm_plex_print_fem 1 1336*c4762a1bSJed Brown 1337*c4762a1bSJed Brown test: 1338*c4762a1bSJed Brown requires: triangle 1339*c4762a1bSJed Brown suffix: 32 1340*c4762a1bSJed Brown args: -run_type test -refinement_limit 0.0625 -variable_coefficient field -interpolate 1 -petscspace_degree 2 -show_initial -dm_plex_print_fem 1 1341*c4762a1bSJed Brown 1342*c4762a1bSJed Brown test: 1343*c4762a1bSJed Brown requires: ctetgen 1344*c4762a1bSJed Brown suffix: 33 1345*c4762a1bSJed Brown args: -run_type test -dim 3 -refinement_limit 0.0 -variable_coefficient field -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1 -cells 1,1,1 1346*c4762a1bSJed Brown 1347*c4762a1bSJed Brown test: 1348*c4762a1bSJed Brown suffix: 34 1349*c4762a1bSJed Brown requires: ctetgen 1350*c4762a1bSJed Brown args: -run_type test -dim 3 -refinement_limit 0.0125 -variable_coefficient field -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1 -cells 1,1,1 1351*c4762a1bSJed Brown 1352*c4762a1bSJed Brown test: 1353*c4762a1bSJed Brown suffix: 35 1354*c4762a1bSJed Brown requires: ctetgen 1355*c4762a1bSJed Brown args: -run_type test -dim 3 -refinement_limit 0.0 -variable_coefficient field -interpolate 1 -petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -cells 1,1,1 1356*c4762a1bSJed Brown 1357*c4762a1bSJed Brown test: 1358*c4762a1bSJed Brown suffix: 36 1359*c4762a1bSJed Brown requires: ctetgen 1360*c4762a1bSJed Brown args: -run_type test -dim 3 -refinement_limit 0.0125 -variable_coefficient field -interpolate 1 -petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -cells 1,1,1 1361*c4762a1bSJed Brown 1362*c4762a1bSJed Brown # Full solve 39-44 1363*c4762a1bSJed Brown test: 1364*c4762a1bSJed Brown suffix: 39 1365*c4762a1bSJed Brown requires: triangle !single 1366*c4762a1bSJed Brown args: -run_type full -refinement_limit 0.015625 -interpolate 1 -petscspace_degree 2 -pc_type gamg -ksp_rtol 1.0e-10 -ksp_monitor_short -ksp_converged_reason -snes_monitor_short -snes_converged_reason ::ascii_info_detail 1367*c4762a1bSJed Brown test: 1368*c4762a1bSJed Brown suffix: 40 1369*c4762a1bSJed Brown requires: triangle !single 1370*c4762a1bSJed Brown args: -run_type full -refinement_limit 0.015625 -variable_coefficient nonlinear -interpolate 1 -petscspace_degree 2 -pc_type svd -ksp_rtol 1.0e-10 -snes_monitor_short -snes_converged_reason ::ascii_info_detail 1371*c4762a1bSJed Brown test: 1372*c4762a1bSJed Brown suffix: 41 1373*c4762a1bSJed Brown requires: triangle !single 1374*c4762a1bSJed Brown args: -run_type full -refinement_limit 0.03125 -variable_coefficient nonlinear -interpolate 1 -petscspace_degree 1 -snes_type fas -snes_fas_levels 2 -fas_coarse_pc_type svd -fas_coarse_ksp_rtol 1.0e-10 -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -dm_refine_hierarchy 1 -snes_view -fas_levels_1_snes_type newtonls -fas_levels_1_pc_type svd -fas_levels_1_ksp_rtol 1.0e-10 -fas_levels_1_snes_monitor_short 1375*c4762a1bSJed Brown test: 1376*c4762a1bSJed Brown suffix: 42 1377*c4762a1bSJed Brown requires: triangle !single 1378*c4762a1bSJed Brown args: -run_type full -refinement_limit 0.0625 -variable_coefficient nonlinear -interpolate 1 -petscspace_degree 1 -snes_type fas -snes_fas_levels 3 -fas_coarse_pc_type svd -fas_coarse_ksp_rtol 1.0e-10 -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -dm_refine_hierarchy 2 -dm_plex_print_fem 0 -snes_view -fas_levels_1_snes_type newtonls -fas_levels_1_pc_type svd -fas_levels_1_ksp_rtol 1.0e-10 -fas_levels_1_snes_monitor_short -fas_levels_2_snes_type newtonls -fas_levels_2_pc_type svd -fas_levels_2_ksp_rtol 1.0e-10 -fas_levels_2_snes_atol 1.0e-11 -fas_levels_2_snes_monitor_short 1379*c4762a1bSJed Brown test: 1380*c4762a1bSJed Brown suffix: 43 1381*c4762a1bSJed Brown requires: triangle !single 1382*c4762a1bSJed Brown nsize: 2 1383*c4762a1bSJed Brown args: -run_type full -refinement_limit 0.03125 -variable_coefficient nonlinear -interpolate 1 -petscspace_degree 1 -snes_type fas -snes_fas_levels 2 -fas_coarse_pc_type svd -fas_coarse_ksp_rtol 1.0e-10 -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -dm_refine_hierarchy 1 -snes_view -fas_levels_1_snes_type newtonls -fas_levels_1_pc_type svd -fas_levels_1_ksp_rtol 1.0e-10 -fas_levels_1_snes_monitor_short 1384*c4762a1bSJed Brown 1385*c4762a1bSJed Brown test: 1386*c4762a1bSJed Brown suffix: 44 1387*c4762a1bSJed Brown requires: triangle !single 1388*c4762a1bSJed Brown nsize: 2 1389*c4762a1bSJed Brown args: -run_type full -refinement_limit 0.0625 -variable_coefficient nonlinear -interpolate 1 -petscspace_degree 1 -snes_type fas -snes_fas_levels 3 -fas_coarse_pc_type svd -fas_coarse_ksp_rtol 1.0e-10 -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -dm_refine_hierarchy 2 -dm_plex_print_fem 0 -snes_view -fas_levels_1_snes_type newtonls -fas_levels_1_pc_type svd -fas_levels_1_ksp_rtol 1.0e-10 -fas_levels_1_snes_monitor_short -fas_levels_2_snes_type newtonls -fas_levels_2_pc_type svd -fas_levels_2_ksp_rtol 1.0e-10 -fas_levels_2_snes_atol 1.0e-11 -fas_levels_2_snes_monitor_short 1390*c4762a1bSJed Brown 1391*c4762a1bSJed Brown # These tests use a loose tolerance just to exercise the PtAP operations for MATIS and multiple PCBDDC setup calls inside PCMG 1392*c4762a1bSJed Brown testset: 1393*c4762a1bSJed Brown requires: triangle !single 1394*c4762a1bSJed Brown nsize: 3 1395*c4762a1bSJed Brown args: -interpolate -run_type full -petscspace_degree 1 -dm_mat_type is -pc_type mg -pc_mg_levels 2 -mg_coarse_pc_type bddc -pc_mg_galerkin pmat -ksp_rtol 1.0e-2 -snes_converged_reason -dm_refine_hierarchy 2 -snes_max_it 4 1396*c4762a1bSJed Brown test: 1397*c4762a1bSJed Brown suffix: gmg_bddc 1398*c4762a1bSJed Brown filter: sed -e "s/CONVERGED_FNORM_RELATIVE iterations 3/CONVERGED_FNORM_RELATIVE iterations 4/g" 1399*c4762a1bSJed Brown args: -mg_levels_pc_type jacobi 1400*c4762a1bSJed Brown test: 1401*c4762a1bSJed Brown filter: sed -e "s/iterations [0-4]/iterations 4/g" 1402*c4762a1bSJed Brown suffix: gmg_bddc_lev 1403*c4762a1bSJed Brown args: -mg_levels_pc_type bddc 1404*c4762a1bSJed Brown 1405*c4762a1bSJed Brown # Restarting 1406*c4762a1bSJed Brown testset: 1407*c4762a1bSJed Brown suffix: restart 1408*c4762a1bSJed Brown requires: hdf5 triangle !complex 1409*c4762a1bSJed Brown args: -run_type test -refinement_limit 0.0 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 1410*c4762a1bSJed Brown test: 1411*c4762a1bSJed Brown args: -dm_view hdf5:sol.h5 -vec_view hdf5:sol.h5::append 1412*c4762a1bSJed Brown test: 1413*c4762a1bSJed Brown args: -f sol.h5 -restart 1414*c4762a1bSJed Brown 1415*c4762a1bSJed Brown # Periodicity 1416*c4762a1bSJed Brown test: 1417*c4762a1bSJed Brown suffix: periodic_0 1418*c4762a1bSJed Brown requires: triangle 1419*c4762a1bSJed Brown args: -run_type full -refinement_limit 0.0 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -snes_converged_reason ::ascii_info_detail 1420*c4762a1bSJed Brown 1421*c4762a1bSJed Brown test: 1422*c4762a1bSJed Brown requires: !complex 1423*c4762a1bSJed Brown suffix: periodic_1 1424*c4762a1bSJed Brown args: -quiet -run_type test -simplex 0 -x_periodicity periodic -y_periodicity periodic -vec_view vtk:test.vtu:vtk_vtu -interpolate 1 -petscspace_degree 1 -dm_refine 1 1425*c4762a1bSJed Brown 1426*c4762a1bSJed Brown # 2D serial P1 test with field bc 1427*c4762a1bSJed Brown test: 1428*c4762a1bSJed Brown suffix: field_bc_2d_p1_0 1429*c4762a1bSJed Brown requires: triangle 1430*c4762a1bSJed Brown args: -run_type test -interpolate 1 -bc_type dirichlet -field_bc -petscspace_degree 1 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1 1431*c4762a1bSJed Brown 1432*c4762a1bSJed Brown test: 1433*c4762a1bSJed Brown suffix: field_bc_2d_p1_1 1434*c4762a1bSJed Brown requires: triangle 1435*c4762a1bSJed Brown args: -run_type test -dm_refine 1 -interpolate 1 -bc_type dirichlet -field_bc -petscspace_degree 1 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1 1436*c4762a1bSJed Brown 1437*c4762a1bSJed Brown test: 1438*c4762a1bSJed Brown suffix: field_bc_2d_p1_neumann_0 1439*c4762a1bSJed Brown requires: triangle 1440*c4762a1bSJed Brown args: -run_type test -interpolate 1 -bc_type neumann -field_bc -petscspace_degree 1 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1 1441*c4762a1bSJed Brown 1442*c4762a1bSJed Brown test: 1443*c4762a1bSJed Brown suffix: field_bc_2d_p1_neumann_1 1444*c4762a1bSJed Brown requires: triangle 1445*c4762a1bSJed Brown args: -run_type test -dm_refine 1 -interpolate 1 -bc_type neumann -field_bc -petscspace_degree 1 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1 1446*c4762a1bSJed Brown 1447*c4762a1bSJed Brown # 3D serial P1 test with field bc 1448*c4762a1bSJed Brown test: 1449*c4762a1bSJed Brown suffix: field_bc_3d_p1_0 1450*c4762a1bSJed Brown requires: ctetgen 1451*c4762a1bSJed Brown args: -run_type test -dim 3 -interpolate 1 -bc_type dirichlet -field_bc -petscspace_degree 1 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -cells 1,1,1 1452*c4762a1bSJed Brown 1453*c4762a1bSJed Brown test: 1454*c4762a1bSJed Brown suffix: field_bc_3d_p1_1 1455*c4762a1bSJed Brown requires: ctetgen 1456*c4762a1bSJed Brown args: -run_type test -dim 3 -dm_refine 1 -interpolate 1 -bc_type dirichlet -field_bc -petscspace_degree 1 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -cells 1,1,1 1457*c4762a1bSJed Brown 1458*c4762a1bSJed Brown test: 1459*c4762a1bSJed Brown suffix: field_bc_3d_p1_neumann_0 1460*c4762a1bSJed Brown requires: ctetgen 1461*c4762a1bSJed Brown args: -run_type test -dim 3 -interpolate 1 -bc_type neumann -field_bc -petscspace_degree 1 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -cells 1,1,1 1462*c4762a1bSJed Brown 1463*c4762a1bSJed Brown test: 1464*c4762a1bSJed Brown suffix: field_bc_3d_p1_neumann_1 1465*c4762a1bSJed Brown requires: ctetgen 1466*c4762a1bSJed Brown args: -run_type test -dim 3 -dm_refine 1 -interpolate 1 -bc_type neumann -field_bc -petscspace_degree 1 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -cells 1,1,1 1467*c4762a1bSJed Brown 1468*c4762a1bSJed Brown # 2D serial P2 test with field bc 1469*c4762a1bSJed Brown test: 1470*c4762a1bSJed Brown suffix: field_bc_2d_p2_0 1471*c4762a1bSJed Brown requires: triangle 1472*c4762a1bSJed Brown args: -run_type test -interpolate 1 -bc_type dirichlet -field_bc -petscspace_degree 2 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1 1473*c4762a1bSJed Brown 1474*c4762a1bSJed Brown test: 1475*c4762a1bSJed Brown suffix: field_bc_2d_p2_1 1476*c4762a1bSJed Brown requires: triangle 1477*c4762a1bSJed Brown args: -run_type test -dm_refine 1 -interpolate 1 -bc_type dirichlet -field_bc -petscspace_degree 2 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1 1478*c4762a1bSJed Brown 1479*c4762a1bSJed Brown test: 1480*c4762a1bSJed Brown suffix: field_bc_2d_p2_neumann_0 1481*c4762a1bSJed Brown requires: triangle 1482*c4762a1bSJed Brown args: -run_type test -interpolate 1 -bc_type neumann -field_bc -petscspace_degree 2 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1 1483*c4762a1bSJed Brown 1484*c4762a1bSJed Brown test: 1485*c4762a1bSJed Brown suffix: field_bc_2d_p2_neumann_1 1486*c4762a1bSJed Brown requires: triangle 1487*c4762a1bSJed Brown args: -run_type test -dm_refine 1 -interpolate 1 -bc_type neumann -field_bc -petscspace_degree 2 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1 1488*c4762a1bSJed Brown 1489*c4762a1bSJed Brown # 3D serial P2 test with field bc 1490*c4762a1bSJed Brown test: 1491*c4762a1bSJed Brown suffix: field_bc_3d_p2_0 1492*c4762a1bSJed Brown requires: ctetgen 1493*c4762a1bSJed Brown args: -run_type test -dim 3 -interpolate 1 -bc_type dirichlet -field_bc -petscspace_degree 2 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -cells 1,1,1 1494*c4762a1bSJed Brown 1495*c4762a1bSJed Brown test: 1496*c4762a1bSJed Brown suffix: field_bc_3d_p2_1 1497*c4762a1bSJed Brown requires: ctetgen 1498*c4762a1bSJed Brown args: -run_type test -dim 3 -dm_refine 1 -interpolate 1 -bc_type dirichlet -field_bc -petscspace_degree 2 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -cells 1,1,1 1499*c4762a1bSJed Brown 1500*c4762a1bSJed Brown test: 1501*c4762a1bSJed Brown suffix: field_bc_3d_p2_neumann_0 1502*c4762a1bSJed Brown requires: ctetgen 1503*c4762a1bSJed Brown args: -run_type test -dim 3 -interpolate 1 -bc_type neumann -field_bc -petscspace_degree 2 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -cells 1,1,1 1504*c4762a1bSJed Brown 1505*c4762a1bSJed Brown test: 1506*c4762a1bSJed Brown suffix: field_bc_3d_p2_neumann_1 1507*c4762a1bSJed Brown requires: ctetgen 1508*c4762a1bSJed Brown args: -run_type test -dim 3 -dm_refine 1 -interpolate 1 -bc_type neumann -field_bc -petscspace_degree 2 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -cells 1,1,1 1509*c4762a1bSJed Brown 1510*c4762a1bSJed Brown # Full solve simplex: Convergence 1511*c4762a1bSJed Brown test: 1512*c4762a1bSJed Brown suffix: tet_conv_p1_r0 1513*c4762a1bSJed Brown requires: ctetgen 1514*c4762a1bSJed Brown args: -run_type full -dim 3 -dm_refine 0 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -dm_view -snes_converged_reason ::ascii_info_detail -pc_type lu -cells 1,1,1 1515*c4762a1bSJed Brown test: 1516*c4762a1bSJed Brown suffix: tet_conv_p1_r2 1517*c4762a1bSJed Brown requires: ctetgen 1518*c4762a1bSJed Brown args: -run_type full -dim 3 -dm_refine 2 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -dm_view -snes_converged_reason ::ascii_info_detail -pc_type lu -cells 1,1,1 1519*c4762a1bSJed Brown test: 1520*c4762a1bSJed Brown suffix: tet_conv_p1_r3 1521*c4762a1bSJed Brown requires: ctetgen 1522*c4762a1bSJed Brown args: -run_type full -dim 3 -dm_refine 3 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -dm_view -snes_converged_reason ::ascii_info_detail -pc_type lu -cells 1,1,1 1523*c4762a1bSJed Brown test: 1524*c4762a1bSJed Brown suffix: tet_conv_p2_r0 1525*c4762a1bSJed Brown requires: ctetgen 1526*c4762a1bSJed Brown args: -run_type full -dim 3 -dm_refine 0 -bc_type dirichlet -interpolate 1 -petscspace_degree 2 -dm_view -snes_converged_reason ::ascii_info_detail -pc_type lu -cells 1,1,1 1527*c4762a1bSJed Brown test: 1528*c4762a1bSJed Brown suffix: tet_conv_p2_r2 1529*c4762a1bSJed Brown requires: ctetgen 1530*c4762a1bSJed Brown args: -run_type full -dim 3 -dm_refine 2 -bc_type dirichlet -interpolate 1 -petscspace_degree 2 -dm_view -snes_converged_reason ::ascii_info_detail -pc_type lu -cells 1,1,1 1531*c4762a1bSJed Brown 1532*c4762a1bSJed Brown # Full solve simplex: PCBDDC 1533*c4762a1bSJed Brown test: 1534*c4762a1bSJed Brown suffix: tri_bddc 1535*c4762a1bSJed Brown requires: triangle !single 1536*c4762a1bSJed Brown nsize: 5 1537*c4762a1bSJed Brown args: -run_type full -petscpartitioner_type simple -dm_refine 2 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -ksp_type gmres -ksp_gmres_restart 100 -ksp_rtol 1.0e-9 -dm_mat_type is -pc_type bddc -snes_monitor_short -ksp_monitor_short -snes_converged_reason ::ascii_info_detail -ksp_converged_reason -snes_view -show_solution 0 1538*c4762a1bSJed Brown 1539*c4762a1bSJed Brown # Full solve simplex: PCBDDC 1540*c4762a1bSJed Brown test: 1541*c4762a1bSJed Brown suffix: tri_parmetis_bddc 1542*c4762a1bSJed Brown requires: triangle !single parmetis 1543*c4762a1bSJed Brown nsize: 4 1544*c4762a1bSJed Brown args: -run_type full -petscpartitioner_type parmetis -dm_refine 2 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -ksp_type gmres -ksp_gmres_restart 100 -ksp_rtol 1.0e-9 -dm_mat_type is -pc_type bddc -snes_monitor_short -ksp_monitor_short -snes_converged_reason ::ascii_info_detail -ksp_converged_reason -snes_view -show_solution 0 1545*c4762a1bSJed Brown 1546*c4762a1bSJed Brown testset: 1547*c4762a1bSJed Brown args: -run_type full -petscpartitioner_type simple -dm_refine 2 -bc_type dirichlet -interpolate 1 -petscspace_degree 2 -dm_mat_type is -pc_type bddc -ksp_type gmres -snes_monitor_short -ksp_monitor_short -snes_view -simplex 0 -petscspace_poly_tensor -pc_bddc_corner_selection -cells 3,3 -ksp_rtol 1.e-9 -pc_bddc_use_edges 0 1548*c4762a1bSJed Brown nsize: 5 1549*c4762a1bSJed Brown output_file: output/ex12_quad_bddc.out 1550*c4762a1bSJed Brown filter: sed -e "s/aijcusparse/aij/g" -e "s/aijviennacl/aij/g" -e "s/factorization: cusparse/factorization: petsc/g" 1551*c4762a1bSJed Brown test: 1552*c4762a1bSJed Brown requires: !single 1553*c4762a1bSJed Brown suffix: quad_bddc 1554*c4762a1bSJed Brown test: 1555*c4762a1bSJed Brown requires: !single cuda 1556*c4762a1bSJed Brown suffix: quad_bddc_cuda 1557*c4762a1bSJed Brown args: -matis_localmat_type aijcusparse -pc_bddc_dirichlet_pc_factor_mat_solver_type cusparse -pc_bddc_neumann_pc_factor_mat_solver_type cusparse 1558*c4762a1bSJed Brown test: 1559*c4762a1bSJed Brown requires: !single viennacl 1560*c4762a1bSJed Brown suffix: quad_bddc_viennacl 1561*c4762a1bSJed Brown args: -matis_localmat_type aijviennacl 1562*c4762a1bSJed Brown 1563*c4762a1bSJed Brown # Full solve simplex: ASM 1564*c4762a1bSJed Brown test: 1565*c4762a1bSJed Brown suffix: tri_q2q1_asm_lu 1566*c4762a1bSJed Brown requires: triangle !single 1567*c4762a1bSJed Brown args: -run_type full -dm_refine 3 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -ksp_type gmres -ksp_gmres_restart 100 -ksp_rtol 1.0e-9 -pc_type asm -pc_asm_type restrict -pc_asm_blocks 4 -sub_pc_type lu -snes_monitor_short -ksp_monitor_short -snes_converged_reason ::ascii_info_detail -ksp_converged_reason -snes_view -show_solution 0 1568*c4762a1bSJed Brown 1569*c4762a1bSJed Brown test: 1570*c4762a1bSJed Brown suffix: tri_q2q1_msm_lu 1571*c4762a1bSJed Brown requires: triangle !single 1572*c4762a1bSJed Brown args: -run_type full -dm_refine 3 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -ksp_type gmres -ksp_gmres_restart 100 -ksp_rtol 1.0e-9 -pc_type asm -pc_asm_type restrict -pc_asm_local_type multiplicative -pc_asm_blocks 4 -sub_pc_type lu -snes_monitor_short -ksp_monitor_short -snes_converged_reason ::ascii_info_detail -ksp_converged_reason -snes_view -show_solution 0 1573*c4762a1bSJed Brown 1574*c4762a1bSJed Brown test: 1575*c4762a1bSJed Brown suffix: tri_q2q1_asm_sor 1576*c4762a1bSJed Brown requires: triangle !single 1577*c4762a1bSJed Brown args: -run_type full -dm_refine 3 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -ksp_type gmres -ksp_gmres_restart 100 -ksp_rtol 1.0e-9 -pc_type asm -pc_asm_type restrict -pc_asm_blocks 4 -sub_pc_type sor -snes_monitor_short -ksp_monitor_short -snes_converged_reason ::ascii_info_detail -ksp_converged_reason -snes_view -show_solution 0 1578*c4762a1bSJed Brown 1579*c4762a1bSJed Brown test: 1580*c4762a1bSJed Brown suffix: tri_q2q1_msm_sor 1581*c4762a1bSJed Brown requires: triangle !single 1582*c4762a1bSJed Brown args: -run_type full -dm_refine 3 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -ksp_type gmres -ksp_gmres_restart 100 -ksp_rtol 1.0e-9 -pc_type asm -pc_asm_type restrict -pc_asm_local_type multiplicative -pc_asm_blocks 4 -sub_pc_type sor -snes_monitor_short -ksp_monitor_short -snes_converged_reason ::ascii_info_detail -ksp_converged_reason -snes_view -show_solution 0 1583*c4762a1bSJed Brown 1584*c4762a1bSJed Brown # Full solve simplex: FAS 1585*c4762a1bSJed Brown test: 1586*c4762a1bSJed Brown suffix: fas_newton_0 1587*c4762a1bSJed Brown requires: triangle !single 1588*c4762a1bSJed Brown args: -run_type full -variable_coefficient nonlinear -interpolate 1 -petscspace_degree 1 -snes_type fas -snes_fas_levels 2 -fas_coarse_pc_type svd -fas_coarse_ksp_rtol 1.0e-10 -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -dm_refine_hierarchy 1 -snes_view -fas_levels_1_snes_type newtonls -fas_levels_1_pc_type svd -fas_levels_1_ksp_rtol 1.0e-10 -fas_levels_1_snes_monitor_short 1589*c4762a1bSJed Brown 1590*c4762a1bSJed Brown test: 1591*c4762a1bSJed Brown suffix: fas_newton_1 1592*c4762a1bSJed Brown requires: triangle !single 1593*c4762a1bSJed Brown args: -run_type full -dm_refine_hierarchy 3 -interpolate 1 -petscspace_degree 1 -snes_type fas -snes_fas_levels 3 -fas_coarse_pc_type lu -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -fas_levels_snes_type newtonls -fas_levels_snes_linesearch_type basic -fas_levels_ksp_rtol 1.0e-10 -fas_levels_snes_monitor_short 1594*c4762a1bSJed Brown 1595*c4762a1bSJed Brown test: 1596*c4762a1bSJed Brown suffix: fas_ngs_0 1597*c4762a1bSJed Brown requires: triangle !single 1598*c4762a1bSJed Brown args: -run_type full -variable_coefficient nonlinear -interpolate 1 -petscspace_degree 1 -snes_type fas -snes_fas_levels 2 -fas_coarse_pc_type svd -fas_coarse_ksp_rtol 1.0e-10 -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -dm_refine_hierarchy 1 -snes_view -fas_levels_1_snes_type ngs -fas_levels_1_snes_monitor_short 1599*c4762a1bSJed Brown 1600*c4762a1bSJed Brown test: 1601*c4762a1bSJed Brown suffix: fas_newton_coarse_0 1602*c4762a1bSJed Brown requires: pragmatic triangle 1603*c4762a1bSJed Brown TODO: broken 1604*c4762a1bSJed Brown args: -run_type full -dm_refine 2 -dm_plex_hash_location -variable_coefficient nonlinear -interpolate 1 -petscspace_degree 1 -snes_type fas -snes_fas_levels 2 -pc_type svd -ksp_rtol 1.0e-10 -fas_coarse_pc_type svd -fas_coarse_ksp_rtol 1.0e-10 -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -dm_coarsen_hierarchy 1 -snes_view -fas_levels_1_snes_type newtonls -fas_levels_1_pc_type svd -fas_levels_1_ksp_rtol 1.0e-10 -fas_levels_1_snes_monitor_short 1605*c4762a1bSJed Brown 1606*c4762a1bSJed Brown test: 1607*c4762a1bSJed Brown suffix: mg_newton_coarse_0 1608*c4762a1bSJed Brown requires: triangle pragmatic 1609*c4762a1bSJed Brown TODO: broken 1610*c4762a1bSJed Brown args: -run_type full -dm_refine 3 -interpolate 1 -petscspace_degree 1 -snes_monitor_short -ksp_monitor_true_residual -snes_converged_reason ::ascii_info_detail -dm_coarsen_hierarchy 3 -dm_plex_hash_location -snes_view -dm_view -ksp_type richardson -pc_type mg -pc_mg_levels 4 -snes_atol 1.0e-8 -ksp_atol 1.0e-8 -snes_rtol 0.0 -ksp_rtol 0.0 -ksp_norm_type unpreconditioned -mg_levels_ksp_type gmres -mg_levels_pc_type ilu -mg_levels_ksp_max_it 10 1611*c4762a1bSJed Brown 1612*c4762a1bSJed Brown test: 1613*c4762a1bSJed Brown suffix: mg_newton_coarse_1 1614*c4762a1bSJed Brown requires: triangle pragmatic 1615*c4762a1bSJed Brown TODO: broken 1616*c4762a1bSJed Brown args: -run_type full -dm_refine 5 -interpolate 1 -petscspace_degree 1 -dm_coarsen_hierarchy 5 -dm_plex_hash_location -dm_plex_separate_marker -dm_plex_coarsen_bd_label marker -dm_plex_remesh_bd -ksp_type richardson -ksp_rtol 1.0e-12 -pc_type mg -pc_mg_levels 3 -mg_levels_ksp_max_it 2 -snes_converged_reason ::ascii_info_detail -snes_monitor -ksp_monitor_true_residual -mg_levels_ksp_monitor_true_residual -dm_view -ksp_view 1617*c4762a1bSJed Brown 1618*c4762a1bSJed Brown test: 1619*c4762a1bSJed Brown suffix: mg_newton_coarse_2 1620*c4762a1bSJed Brown requires: triangle pragmatic 1621*c4762a1bSJed Brown TODO: broken 1622*c4762a1bSJed Brown args: -run_type full -dm_refine 5 -interpolate 1 -petscspace_degree 1 -dm_coarsen_hierarchy 5 -dm_plex_hash_location -dm_plex_separate_marker -dm_plex_remesh_bd -ksp_type richardson -ksp_rtol 1.0e-12 -pc_type mg -pc_mg_levels 3 -mg_levels_ksp_max_it 2 -snes_converged_reason ::ascii_info_detail -snes_monitor -ksp_monitor_true_residual -mg_levels_ksp_monitor_true_residual -dm_view -ksp_view 1623*c4762a1bSJed Brown 1624*c4762a1bSJed Brown # Full solve tensor 1625*c4762a1bSJed Brown test: 1626*c4762a1bSJed Brown suffix: tensor_plex_2d 1627*c4762a1bSJed Brown args: -run_type test -refinement_limit 0.0 -simplex 0 -interpolate -bc_type dirichlet -petscspace_degree 1 -dm_refine_hierarchy 2 -cells 2,2 1628*c4762a1bSJed Brown 1629*c4762a1bSJed Brown test: 1630*c4762a1bSJed Brown suffix: tensor_p4est_2d 1631*c4762a1bSJed Brown requires: p4est 1632*c4762a1bSJed Brown args: -run_type test -refinement_limit 0.0 -simplex 0 -interpolate -bc_type dirichlet -petscspace_degree 1 -dm_forest_initial_refinement 2 -dm_forest_minimum_refinement 0 -dm_plex_convert_type p4est -cells 2,2 1633*c4762a1bSJed Brown 1634*c4762a1bSJed Brown test: 1635*c4762a1bSJed Brown suffix: tensor_plex_3d 1636*c4762a1bSJed Brown args: -run_type test -refinement_limit 0.0 -simplex 0 -interpolate -bc_type dirichlet -petscspace_degree 1 -dim 3 -dm_refine_hierarchy 1 -cells 2,2,2 1637*c4762a1bSJed Brown 1638*c4762a1bSJed Brown test: 1639*c4762a1bSJed Brown suffix: tensor_p4est_3d 1640*c4762a1bSJed Brown requires: p4est 1641*c4762a1bSJed Brown args: -run_type test -refinement_limit 0.0 -simplex 0 -interpolate -bc_type dirichlet -petscspace_degree 1 -dm_forest_initial_refinement 1 -dm_forest_minimum_refinement 0 -dim 3 -dm_plex_convert_type p8est -cells 2,2,2 1642*c4762a1bSJed Brown 1643*c4762a1bSJed Brown test: 1644*c4762a1bSJed Brown suffix: p4est_test_q2_conformal_serial 1645*c4762a1bSJed Brown requires: p4est 1646*c4762a1bSJed Brown args: -run_type test -interpolate 1 -petscspace_degree 2 -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -cells 2,2 1647*c4762a1bSJed Brown 1648*c4762a1bSJed Brown test: 1649*c4762a1bSJed Brown suffix: p4est_test_q2_conformal_parallel 1650*c4762a1bSJed Brown requires: p4est 1651*c4762a1bSJed Brown nsize: 7 1652*c4762a1bSJed Brown args: -run_type test -interpolate 1 -petscspace_degree 2 -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -petscpartitioner_type simple -cells 2,2 1653*c4762a1bSJed Brown 1654*c4762a1bSJed Brown test: 1655*c4762a1bSJed Brown suffix: p4est_test_q2_conformal_parallel_parmetis 1656*c4762a1bSJed Brown requires: parmetis p4est 1657*c4762a1bSJed Brown nsize: 4 1658*c4762a1bSJed Brown args: -run_type test -interpolate 1 -petscspace_degree 2 -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -petscpartitioner_type parmetis -cells 2,2 1659*c4762a1bSJed Brown 1660*c4762a1bSJed Brown test: 1661*c4762a1bSJed Brown suffix: p4est_test_q2_nonconformal_serial 1662*c4762a1bSJed Brown requires: p4est 1663*c4762a1bSJed Brown filter: grep -v "CG or CGNE: variant" 1664*c4762a1bSJed Brown args: -run_type test -interpolate 1 -petscspace_degree 2 -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -cells 2,2 1665*c4762a1bSJed Brown 1666*c4762a1bSJed Brown test: 1667*c4762a1bSJed Brown suffix: p4est_test_q2_nonconformal_parallel 1668*c4762a1bSJed Brown requires: p4est 1669*c4762a1bSJed Brown filter: grep -v "CG or CGNE: variant" 1670*c4762a1bSJed Brown nsize: 7 1671*c4762a1bSJed Brown args: -run_type test -interpolate 1 -petscspace_degree 2 -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -petscpartitioner_type simple -cells 2,2 1672*c4762a1bSJed Brown 1673*c4762a1bSJed Brown test: 1674*c4762a1bSJed Brown suffix: p4est_test_q2_nonconformal_parallel_parmetis 1675*c4762a1bSJed Brown requires: parmetis p4est 1676*c4762a1bSJed Brown nsize: 4 1677*c4762a1bSJed Brown args: -run_type test -interpolate 1 -petscspace_degree 2 -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -petscpartitioner_type parmetis -cells 2,2 1678*c4762a1bSJed Brown 1679*c4762a1bSJed Brown test: 1680*c4762a1bSJed Brown suffix: p4est_exact_q2_conformal_serial 1681*c4762a1bSJed Brown requires: p4est !single !complex !__float128 1682*c4762a1bSJed Brown args: -run_type exact -interpolate 1 -petscspace_degree 2 -fas_levels_snes_atol 1.e-10 -snes_max_it 1 -snes_type fas -snes_fas_levels 3 -fas_coarse_pc_type none -fas_coarse_ksp_type preonly -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -fas_levels_snes_type newtonls -fas_levels_pc_type none -fas_levels_ksp_type preonly -fas_levels_snes_monitor_short -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -cells 2,2 1683*c4762a1bSJed Brown 1684*c4762a1bSJed Brown test: 1685*c4762a1bSJed Brown suffix: p4est_exact_q2_conformal_parallel 1686*c4762a1bSJed Brown requires: p4est !single !complex !__float128 1687*c4762a1bSJed Brown nsize: 4 1688*c4762a1bSJed Brown args: -run_type exact -interpolate 1 -petscspace_degree 2 -fas_levels_snes_atol 1.e-10 -snes_max_it 1 -snes_type fas -snes_fas_levels 3 -fas_coarse_pc_type none -fas_coarse_ksp_type preonly -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -fas_levels_snes_type newtonls -fas_levels_pc_type none -fas_levels_ksp_type preonly -fas_levels_snes_monitor_short -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -cells 2,2 1689*c4762a1bSJed Brown 1690*c4762a1bSJed Brown test: 1691*c4762a1bSJed Brown suffix: p4est_exact_q2_conformal_parallel_parmetis 1692*c4762a1bSJed Brown requires: parmetis p4est !single 1693*c4762a1bSJed Brown nsize: 4 1694*c4762a1bSJed Brown args: -run_type exact -interpolate 1 -petscspace_degree 2 -fas_levels_snes_atol 1.e-10 -snes_max_it 1 -snes_type fas -snes_fas_levels 3 -fas_coarse_pc_type none -fas_coarse_ksp_type preonly -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -fas_levels_snes_type newtonls -fas_levels_pc_type none -fas_levels_ksp_type preonly -fas_levels_snes_monitor_short -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -petscpartitioner_type parmetis -cells 2,2 1695*c4762a1bSJed Brown 1696*c4762a1bSJed Brown test: 1697*c4762a1bSJed Brown suffix: p4est_exact_q2_nonconformal_serial 1698*c4762a1bSJed Brown requires: p4est 1699*c4762a1bSJed Brown args: -run_type exact -interpolate 1 -petscspace_degree 2 -fas_levels_snes_atol 1.e-10 -snes_max_it 1 -snes_type fas -snes_fas_levels 3 -fas_coarse_pc_type none -fas_coarse_ksp_type preonly -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -fas_levels_snes_type newtonls -fas_levels_pc_type none -fas_levels_ksp_type preonly -fas_levels_snes_monitor_short -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -cells 2,2 1700*c4762a1bSJed Brown 1701*c4762a1bSJed Brown test: 1702*c4762a1bSJed Brown suffix: p4est_exact_q2_nonconformal_parallel 1703*c4762a1bSJed Brown requires: p4est 1704*c4762a1bSJed Brown nsize: 7 1705*c4762a1bSJed Brown args: -run_type exact -interpolate 1 -petscspace_degree 2 -fas_levels_snes_atol 1.e-10 -snes_max_it 1 -snes_type fas -snes_fas_levels 3 -fas_coarse_pc_type none -fas_coarse_ksp_type preonly -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -fas_levels_snes_type newtonls -fas_levels_pc_type none -fas_levels_ksp_type preonly -fas_levels_snes_monitor_short -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -petscpartitioner_type simple -cells 2,2 1706*c4762a1bSJed Brown 1707*c4762a1bSJed Brown test: 1708*c4762a1bSJed Brown suffix: p4est_exact_q2_nonconformal_parallel_parmetis 1709*c4762a1bSJed Brown requires: parmetis p4est 1710*c4762a1bSJed Brown nsize: 4 1711*c4762a1bSJed Brown args: -run_type exact -interpolate 1 -petscspace_degree 2 -fas_levels_snes_atol 1.e-10 -snes_max_it 1 -snes_type fas -snes_fas_levels 3 -fas_coarse_pc_type none -fas_coarse_ksp_type preonly -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -fas_levels_snes_type newtonls -fas_levels_pc_type none -fas_levels_ksp_type preonly -fas_levels_snes_monitor_short -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -petscpartitioner_type parmetis -cells 2,2 1712*c4762a1bSJed Brown 1713*c4762a1bSJed Brown test: 1714*c4762a1bSJed Brown suffix: p4est_full_q2_nonconformal_serial 1715*c4762a1bSJed Brown requires: p4est !single 1716*c4762a1bSJed Brown filter: grep -v "variant HERMITIAN" 1717*c4762a1bSJed Brown args: -run_type full -interpolate 1 -petscspace_degree 2 -snes_max_it 20 -snes_type fas -snes_fas_levels 3 -fas_coarse_pc_type jacobi -fas_coarse_ksp_type cg -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -fas_levels_snes_type newtonls -fas_levels_pc_type jacobi -fas_levels_ksp_type cg -fas_levels_snes_monitor_short -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -cells 2,2 1718*c4762a1bSJed Brown 1719*c4762a1bSJed Brown test: 1720*c4762a1bSJed Brown suffix: p4est_full_q2_nonconformal_parallel 1721*c4762a1bSJed Brown requires: p4est !single 1722*c4762a1bSJed Brown filter: grep -v "variant HERMITIAN" 1723*c4762a1bSJed Brown nsize: 7 1724*c4762a1bSJed Brown args: -run_type full -interpolate 1 -petscspace_degree 2 -snes_max_it 20 -snes_type fas -snes_fas_levels 3 -fas_coarse_pc_type jacobi -fas_coarse_ksp_type cg -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -fas_levels_snes_type newtonls -fas_levels_pc_type jacobi -fas_levels_ksp_type cg -fas_levels_snes_monitor_short -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -petscpartitioner_type simple -cells 2,2 1725*c4762a1bSJed Brown 1726*c4762a1bSJed Brown test: 1727*c4762a1bSJed Brown suffix: p4est_full_q2_nonconformal_parallel_bddcfas 1728*c4762a1bSJed Brown requires: p4est !single 1729*c4762a1bSJed Brown filter: grep -v "variant HERMITIAN" 1730*c4762a1bSJed Brown nsize: 7 1731*c4762a1bSJed Brown args: -run_type full -interpolate 1 -petscspace_degree 2 -snes_max_it 20 -snes_type fas -snes_fas_levels 3 -dm_mat_type is -fas_coarse_pc_type bddc -fas_coarse_ksp_type cg -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -fas_levels_snes_type newtonls -fas_levels_pc_type bddc -fas_levels_ksp_type cg -fas_levels_snes_monitor_short -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -petscpartitioner_type simple -cells 2,2 1732*c4762a1bSJed Brown 1733*c4762a1bSJed Brown test: 1734*c4762a1bSJed Brown suffix: p4est_full_q2_nonconformal_parallel_bddc 1735*c4762a1bSJed Brown requires: p4est !single 1736*c4762a1bSJed Brown filter: grep -v "variant HERMITIAN" 1737*c4762a1bSJed Brown nsize: 7 1738*c4762a1bSJed Brown args: -run_type full -interpolate 1 -petscspace_degree 2 -snes_max_it 20 -snes_type newtonls -dm_mat_type is -pc_type bddc -ksp_type cg -snes_monitor_short -snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -petscpartitioner_type simple -cells 2,2 1739*c4762a1bSJed Brown 1740*c4762a1bSJed Brown test: 1741*c4762a1bSJed Brown TODO: broken 1742*c4762a1bSJed Brown suffix: p4est_fas_q2_conformal_serial 1743*c4762a1bSJed Brown requires: p4est !complex !__float128 1744*c4762a1bSJed Brown args: -run_type full -variable_coefficient nonlinear -interpolate 1 -petscspace_degree 2 -snes_max_it 20 -snes_type fas -snes_fas_levels 3 -pc_type jacobi -ksp_type gmres -fas_coarse_pc_type svd -fas_coarse_ksp_type gmres -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -fas_levels_snes_type newtonls -fas_levels_pc_type svd -fas_levels_ksp_type gmres -fas_levels_snes_monitor_short -simplex 0 -dm_refine_hierarchy 3 -cells 2,2 1745*c4762a1bSJed Brown 1746*c4762a1bSJed Brown test: 1747*c4762a1bSJed Brown TODO: broken 1748*c4762a1bSJed Brown suffix: p4est_fas_q2_nonconformal_serial 1749*c4762a1bSJed Brown requires: p4est 1750*c4762a1bSJed Brown args: -run_type full -variable_coefficient nonlinear -interpolate 1 -petscspace_degree 2 -snes_max_it 20 -snes_type fas -snes_fas_levels 3 -pc_type jacobi -ksp_type gmres -fas_coarse_pc_type jacobi -fas_coarse_ksp_type gmres -fas_coarse_ksp_monitor_true_residual -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -fas_levels_snes_type newtonls -fas_levels_pc_type jacobi -fas_levels_ksp_type gmres -fas_levels_snes_monitor_short -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -cells 2,2 1751*c4762a1bSJed Brown 1752*c4762a1bSJed Brown test: 1753*c4762a1bSJed Brown suffix: fas_newton_0_p4est 1754*c4762a1bSJed Brown requires: p4est !single !__float128 1755*c4762a1bSJed Brown args: -run_type full -variable_coefficient nonlinear -interpolate 1 -petscspace_degree 1 -snes_type fas -snes_fas_levels 2 -fas_coarse_pc_type svd -fas_coarse_ksp_rtol 1.0e-10 -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -fas_levels_1_snes_type newtonls -fas_levels_1_pc_type svd -fas_levels_1_ksp_rtol 1.0e-10 -fas_levels_1_snes_monitor_short -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -cells 2,2 1756*c4762a1bSJed Brown 1757*c4762a1bSJed Brown # Full solve simplicial AMR 1758*c4762a1bSJed Brown test: 1759*c4762a1bSJed Brown suffix: tri_p1_adapt_0 1760*c4762a1bSJed Brown requires: pragmatic 1761*c4762a1bSJed Brown TODO: broken 1762*c4762a1bSJed Brown args: -run_type exact -dim 2 -dm_refine 5 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -variable_coefficient circle -snes_converged_reason ::ascii_info_detail -pc_type lu -adaptor_refinement_factor 1.0 -dm_view -dm_adapt_view -snes_adapt_initial 1 1763*c4762a1bSJed Brown 1764*c4762a1bSJed Brown test: 1765*c4762a1bSJed Brown suffix: tri_p1_adapt_1 1766*c4762a1bSJed Brown requires: pragmatic 1767*c4762a1bSJed Brown TODO: broken 1768*c4762a1bSJed Brown args: -run_type exact -dim 2 -dm_refine 5 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -variable_coefficient circle -snes_converged_reason ::ascii_info_detail -pc_type lu -adaptor_refinement_factor 1.0 -dm_view -dm_adapt_iter_view -dm_adapt_view -snes_adapt_sequence 2 1769*c4762a1bSJed Brown 1770*c4762a1bSJed Brown test: 1771*c4762a1bSJed Brown suffix: tri_p1_adapt_analytic_0 1772*c4762a1bSJed Brown requires: pragmatic 1773*c4762a1bSJed Brown TODO: broken 1774*c4762a1bSJed Brown args: -run_type exact -dim 2 -dm_refine 3 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -variable_coefficient cross -snes_adapt_initial 4 -adaptor_target_num 500 -adaptor_monitor -dm_view -dm_adapt_iter_view 1775*c4762a1bSJed Brown 1776*c4762a1bSJed Brown # Full solve tensor AMR 1777*c4762a1bSJed Brown test: 1778*c4762a1bSJed Brown suffix: quad_q1_adapt_0 1779*c4762a1bSJed Brown requires: p4est 1780*c4762a1bSJed Brown args: -run_type exact -dim 2 -simplex 0 -dm_plex_convert_type p4est -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -variable_coefficient circle -snes_converged_reason ::ascii_info_detail -pc_type lu -dm_forest_initial_refinement 4 -snes_adapt_initial 1 -dm_view 1781*c4762a1bSJed Brown filter: grep -v DM_ 1782*c4762a1bSJed Brown 1783*c4762a1bSJed Brown test: 1784*c4762a1bSJed Brown suffix: amr_0 1785*c4762a1bSJed Brown nsize: 5 1786*c4762a1bSJed Brown args: -run_type test -petscpartitioner_type simple -refinement_limit 0.0 -simplex 0 -interpolate -bc_type dirichlet -petscspace_degree 1 -dm_refine 1 -cells 2,2 1787*c4762a1bSJed Brown 1788*c4762a1bSJed Brown test: 1789*c4762a1bSJed Brown suffix: amr_1 1790*c4762a1bSJed Brown requires: p4est !complex 1791*c4762a1bSJed Brown args: -run_type test -refinement_limit 0.0 -simplex 0 -interpolate -bc_type dirichlet -petscspace_degree 1 -dm_plex_convert_type p4est -dm_p4est_refine_pattern center -dm_forest_maximum_refinement 5 -dm_view vtk:amr.vtu:vtk_vtu -vec_view vtk:amr.vtu:vtk_vtu:append -cells 2,2 1792*c4762a1bSJed Brown 1793*c4762a1bSJed Brown test: 1794*c4762a1bSJed Brown suffix: p4est_solve_bddc 1795*c4762a1bSJed Brown requires: p4est !complex 1796*c4762a1bSJed Brown args: -run_type full -variable_coefficient nonlinear -nonzero_initial_guess 1 -interpolate 1 -petscspace_degree 2 -snes_max_it 20 -snes_type newtonls -dm_mat_type is -pc_type bddc -ksp_type cg -snes_monitor_short -ksp_monitor -snes_linesearch_type bt -snes_converged_reason -snes_view -simplex 0 -petscspace_poly_tensor -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -petscpartitioner_type simple -pc_bddc_detect_disconnected 1797*c4762a1bSJed Brown nsize: 4 1798*c4762a1bSJed Brown 1799*c4762a1bSJed Brown test: 1800*c4762a1bSJed Brown suffix: p4est_solve_fas 1801*c4762a1bSJed Brown requires: p4est 1802*c4762a1bSJed Brown args: -run_type full -variable_coefficient nonlinear -nonzero_initial_guess 1 -interpolate 1 -petscspace_degree 2 -snes_max_it 10 -snes_type fas -snes_linesearch_type bt -snes_fas_levels 3 -fas_coarse_snes_type newtonls -fas_coarse_snes_linesearch_type basic -fas_coarse_ksp_type cg -fas_coarse_pc_type jacobi -fas_coarse_snes_monitor_short -fas_levels_snes_max_it 4 -fas_levels_snes_type newtonls -fas_levels_snes_linesearch_type bt -fas_levels_ksp_type cg -fas_levels_pc_type jacobi -fas_levels_snes_monitor_short -fas_levels_cycle_snes_linesearch_type bt -snes_monitor_short -snes_converged_reason -snes_view -simplex 0 -petscspace_poly_tensor -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash 1803*c4762a1bSJed Brown nsize: 4 1804*c4762a1bSJed Brown TODO: identical machine two runs produce slightly different solver trackers 1805*c4762a1bSJed Brown 1806*c4762a1bSJed Brown test: 1807*c4762a1bSJed Brown suffix: p4est_convergence_test_1 1808*c4762a1bSJed Brown requires: p4est 1809*c4762a1bSJed Brown args: -quiet -run_type test -interpolate 1 -petscspace_degree 1 -simplex 0 -petscspace_poly_tensor -dm_plex_convert_type p4est -dm_forest_minimum_refinement 2 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash 1810*c4762a1bSJed Brown nsize: 4 1811*c4762a1bSJed Brown 1812*c4762a1bSJed Brown test: 1813*c4762a1bSJed Brown suffix: p4est_convergence_test_2 1814*c4762a1bSJed Brown requires: p4est 1815*c4762a1bSJed Brown args: -quiet -run_type test -interpolate 1 -petscspace_degree 1 -simplex 0 -petscspace_poly_tensor -dm_plex_convert_type p4est -dm_forest_minimum_refinement 3 -dm_forest_initial_refinement 3 -dm_forest_maximum_refinement 5 -dm_p4est_refine_pattern hash 1816*c4762a1bSJed Brown 1817*c4762a1bSJed Brown test: 1818*c4762a1bSJed Brown suffix: p4est_convergence_test_3 1819*c4762a1bSJed Brown requires: p4est 1820*c4762a1bSJed Brown args: -quiet -run_type test -interpolate 1 -petscspace_degree 1 -simplex 0 -petscspace_poly_tensor -dm_plex_convert_type p4est -dm_forest_minimum_refinement 4 -dm_forest_initial_refinement 4 -dm_forest_maximum_refinement 6 -dm_p4est_refine_pattern hash 1821*c4762a1bSJed Brown 1822*c4762a1bSJed Brown test: 1823*c4762a1bSJed Brown suffix: p4est_convergence_test_4 1824*c4762a1bSJed Brown requires: p4est 1825*c4762a1bSJed Brown args: -quiet -run_type test -interpolate 1 -petscspace_degree 1 -simplex 0 -petscspace_poly_tensor -dm_plex_convert_type p4est -dm_forest_minimum_refinement 5 -dm_forest_initial_refinement 5 -dm_forest_maximum_refinement 7 -dm_p4est_refine_pattern hash 1826*c4762a1bSJed Brown timeoutfactor: 5 1827*c4762a1bSJed Brown 1828*c4762a1bSJed Brown # Serial tests with GLVis visualization 1829*c4762a1bSJed Brown test: 1830*c4762a1bSJed Brown suffix: glvis_2d_tet_p1 1831*c4762a1bSJed Brown args: -quiet -run_type test -interpolate 1 -bc_type dirichlet -petscspace_degree 1 -vec_view glvis: -f ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_periodic.msh -dm_plex_gmsh_periodic 0 1832*c4762a1bSJed Brown test: 1833*c4762a1bSJed Brown suffix: glvis_2d_tet_p2 1834*c4762a1bSJed Brown args: -quiet -run_type test -interpolate 1 -bc_type dirichlet -petscspace_degree 2 -vec_view glvis: -f ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_periodic.msh -dm_plex_gmsh_periodic 0 1835*c4762a1bSJed Brown test: 1836*c4762a1bSJed Brown suffix: glvis_2d_hex_p1 1837*c4762a1bSJed Brown args: -quiet -run_type test -interpolate 1 -bc_type dirichlet -petscspace_degree 1 -vec_view glvis: -simplex 0 -dm_refine 1 1838*c4762a1bSJed Brown test: 1839*c4762a1bSJed Brown suffix: glvis_2d_hex_p2 1840*c4762a1bSJed Brown args: -quiet -run_type test -interpolate 1 -bc_type dirichlet -petscspace_degree 2 -vec_view glvis: -simplex 0 -dm_refine 1 1841*c4762a1bSJed Brown test: 1842*c4762a1bSJed Brown suffix: glvis_2d_hex_p2_p4est 1843*c4762a1bSJed Brown requires: p4est 1844*c4762a1bSJed Brown args: -quiet -run_type test -interpolate 1 -bc_type dirichlet -petscspace_degree 2 -vec_view glvis: -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 1 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -cells 2,2 -viewer_glvis_dm_plex_enable_ncmesh 1845*c4762a1bSJed Brown test: 1846*c4762a1bSJed Brown suffix: glvis_2d_tet_p0 1847*c4762a1bSJed Brown args: -run_type exact -interpolate 1 -guess_vec_view glvis: -nonzero_initial_guess 1 -f ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_periodic.msh -petscspace_degree 0 1848*c4762a1bSJed Brown test: 1849*c4762a1bSJed Brown suffix: glvis_2d_hex_p0 1850*c4762a1bSJed Brown args: -run_type exact -interpolate 1 -guess_vec_view glvis: -nonzero_initial_guess 1 -cells 5,7 -simplex 0 -petscspace_degree 0 1851*c4762a1bSJed Brown 1852*c4762a1bSJed Brown # PCHPDDM tests 1853*c4762a1bSJed Brown testset: 1854*c4762a1bSJed Brown nsize: 4 1855*c4762a1bSJed Brown requires: hpddm slepc !single 1856*c4762a1bSJed Brown args: -run_type test -run_test_check_ksp -quiet -petscspace_degree 1 -interpolate 1 -petscpartitioner_type simple -bc_type none -simplex 0 -pc_type hpddm -pc_hpddm_levels_1_sub_pc_type lu -pc_hpddm_levels_1_eps_nev 2 -pc_hpddm_coarse_p 1 -pc_hpddm_coarse_pc_type svd -ksp_rtol 1.e-10 -pc_hpddm_levels_1_st_pc_factor_shift_type INBLOCKS -ksp_converged_reason 1857*c4762a1bSJed Brown test: 1858*c4762a1bSJed Brown suffix: quad_singular_hpddm 1859*c4762a1bSJed Brown args: -cells 6,7 1860*c4762a1bSJed Brown test: 1861*c4762a1bSJed Brown requires: p4est 1862*c4762a1bSJed Brown suffix: p4est_singular_2d_hpddm 1863*c4762a1bSJed Brown args: -dm_plex_convert_type p4est -dm_forest_minimum_refinement 1 -dm_forest_initial_refinement 3 -dm_forest_maximum_refinement 3 1864*c4762a1bSJed Brown test: 1865*c4762a1bSJed Brown requires: p4est 1866*c4762a1bSJed Brown suffix: p4est_nc_singular_2d_hpddm 1867*c4762a1bSJed Brown args: -dm_plex_convert_type p4est -dm_forest_minimum_refinement 1 -dm_forest_initial_refinement 1 -dm_forest_maximum_refinement 3 -dm_p4est_refine_pattern hash 1868*c4762a1bSJed Brown testset: 1869*c4762a1bSJed Brown nsize: 4 1870*c4762a1bSJed Brown requires: hpddm slepc triangle !single 1871*c4762a1bSJed Brown args: -run_type full -petscpartitioner_type simple -dm_refine 2 -bc_type dirichlet -interpolate 1 -petscspace_degree 2 -ksp_type gmres -ksp_gmres_restart 100 -pc_type hpddm -snes_monitor_short -ksp_monitor_short -snes_converged_reason ::ascii_info_detail -ksp_converged_reason -snes_view -show_solution 0 -pc_type hpddm -pc_hpddm_levels_1_sub_pc_type lu -pc_hpddm_levels_1_eps_nev 4 -pc_hpddm_coarse_p 2 -pc_hpddm_coarse_pc_type redundant -ksp_rtol 1.e-1 1872*c4762a1bSJed Brown test: 1873*c4762a1bSJed Brown args: -pc_hpddm_coarse_mat_type baij -options_left no 1874*c4762a1bSJed Brown suffix: tri_hpddm_reuse_baij 1875*c4762a1bSJed Brown test: 1876*c4762a1bSJed Brown requires: !complex 1877*c4762a1bSJed Brown suffix: tri_hpddm_reuse 1878*c4762a1bSJed Brown testset: 1879*c4762a1bSJed Brown nsize: 4 1880*c4762a1bSJed Brown requires: hpddm slepc !single 1881*c4762a1bSJed Brown args: -run_type full -petscpartitioner_type simple -cells 7,5 -dm_refine 2 -simplex 0 -bc_type dirichlet -interpolate 1 -petscspace_degree 2 -ksp_type gmres -ksp_gmres_restart 100 -pc_type hpddm -snes_monitor_short -ksp_monitor_short -snes_converged_reason ::ascii_info_detail -ksp_converged_reason -snes_view -show_solution 0 -pc_type hpddm -pc_hpddm_levels_1_sub_pc_type lu -pc_hpddm_levels_1_eps_nev 4 -pc_hpddm_coarse_p 2 -pc_hpddm_coarse_pc_type redundant -ksp_rtol 1.e-1 1882*c4762a1bSJed Brown test: 1883*c4762a1bSJed Brown args: -pc_hpddm_coarse_mat_type baij -options_left no 1884*c4762a1bSJed Brown suffix: quad_hpddm_reuse_baij 1885*c4762a1bSJed Brown test: 1886*c4762a1bSJed Brown requires: !complex 1887*c4762a1bSJed Brown suffix: quad_hpddm_reuse 1888*c4762a1bSJed Brown testset: 1889*c4762a1bSJed Brown nsize: 4 1890*c4762a1bSJed Brown requires: hpddm slepc !single 1891*c4762a1bSJed Brown args: -run_type full -petscpartitioner_type simple -cells 7,5 -dm_refine 2 -simplex 0 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -ksp_type gmres -ksp_gmres_restart 100 -pc_type hpddm -snes_monitor_short -ksp_monitor_short -snes_converged_reason ::ascii_info_detail -ksp_converged_reason -snes_view -show_solution 0 -pc_type hpddm -pc_hpddm_levels_1_sub_pc_type lu -pc_hpddm_levels_1_eps_threshold 0.1 -pc_hpddm_coarse_p 2 -pc_hpddm_coarse_pc_type redundant -ksp_rtol 1.e-1 1892*c4762a1bSJed Brown test: 1893*c4762a1bSJed Brown args: -pc_hpddm_coarse_mat_type baij -options_left no 1894*c4762a1bSJed Brown suffix: quad_hpddm_reuse_threshold_baij 1895*c4762a1bSJed Brown test: 1896*c4762a1bSJed Brown requires: !complex 1897*c4762a1bSJed Brown suffix: quad_hpddm_reuse_threshold 1898*c4762a1bSJed Brown testset: 1899*c4762a1bSJed Brown nsize: 4 1900*c4762a1bSJed Brown requires: hpddm slepc parmetis !single 1901*c4762a1bSJed Brown args: -run_type full -petscpartitioner_type parmetis -dm_refine 3 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -ksp_type gmres -ksp_gmres_restart 100 -pc_type hpddm -snes_monitor_short -ksp_monitor_short -snes_converged_reason ::ascii_info_detail -ksp_converged_reason -snes_view -show_solution 0 -pc_type hpddm -pc_hpddm_levels_1_sub_pc_type icc -pc_hpddm_levels_1_eps_nev 20 -pc_hpddm_coarse_p 2 -pc_hpddm_coarse_pc_type redundant -ksp_rtol 1.e-10 -f ${PETSC_DIR}/share/petsc/datafiles/meshes/square_periodic.msh -pc_hpddm_levels_1_sub_pc_factor_levels 3 -variable_coefficient circle -dm_plex_gmsh_periodic 0 1902*c4762a1bSJed Brown test: 1903*c4762a1bSJed Brown args: -pc_hpddm_coarse_mat_type baij -options_left no 1904*c4762a1bSJed Brown suffix: tri_parmetis_hpddm_baij 1905*c4762a1bSJed Brown test: 1906*c4762a1bSJed Brown requires: !complex 1907*c4762a1bSJed Brown suffix: tri_parmetis_hpddm 1908*c4762a1bSJed Brown TEST*/ 1909