xref: /petsc/src/snes/tutorials/ex12.c (revision c4762a1b19cd2af06abeed90e8f9d34fb975dd94)
1*c4762a1bSJed Brown static char help[] = "Poisson Problem in 2d and 3d with simplicial finite elements.\n\
2*c4762a1bSJed Brown We solve the Poisson problem in a rectangular\n\
3*c4762a1bSJed Brown domain, using a parallel unstructured mesh (DMPLEX) to discretize it.\n\
4*c4762a1bSJed Brown This example supports discretized auxiliary fields (conductivity) as well as\n\
5*c4762a1bSJed Brown multilevel nonlinear solvers.\n\n\n";
6*c4762a1bSJed Brown 
7*c4762a1bSJed Brown /*
8*c4762a1bSJed Brown A visualization of the adaptation can be accomplished using:
9*c4762a1bSJed Brown 
10*c4762a1bSJed Brown   -dm_adapt_view hdf5:$PWD/adapt.h5 -sol_adapt_view hdf5:$PWD/adapt.h5::append -dm_adapt_pre_view hdf5:$PWD/orig.h5 -sol_adapt_pre_view hdf5:$PWD/orig.h5::append
11*c4762a1bSJed Brown 
12*c4762a1bSJed Brown Information on refinement:
13*c4762a1bSJed Brown 
14*c4762a1bSJed Brown    -info -info_exclude null,sys,vec,is,mat,ksp,snes,ts
15*c4762a1bSJed Brown */
16*c4762a1bSJed Brown 
17*c4762a1bSJed Brown #include <petscdmplex.h>
18*c4762a1bSJed Brown #include <petscdmadaptor.h>
19*c4762a1bSJed Brown #include <petscsnes.h>
20*c4762a1bSJed Brown #include <petscds.h>
21*c4762a1bSJed Brown #include <petscviewerhdf5.h>
22*c4762a1bSJed Brown 
23*c4762a1bSJed Brown typedef enum {NEUMANN, DIRICHLET, NONE} BCType;
24*c4762a1bSJed Brown typedef enum {RUN_FULL, RUN_EXACT, RUN_TEST, RUN_PERF} RunType;
25*c4762a1bSJed Brown typedef enum {COEFF_NONE, COEFF_ANALYTIC, COEFF_FIELD, COEFF_NONLINEAR, COEFF_CIRCLE, COEFF_CROSS} CoeffType;
26*c4762a1bSJed Brown 
27*c4762a1bSJed Brown typedef struct {
28*c4762a1bSJed Brown   PetscInt       debug;             /* The debugging level */
29*c4762a1bSJed Brown   RunType        runType;           /* Whether to run tests, or solve the full problem */
30*c4762a1bSJed Brown   PetscBool      jacobianMF;        /* Whether to calculate the Jacobian action on the fly */
31*c4762a1bSJed Brown   PetscLogEvent  createMeshEvent;
32*c4762a1bSJed Brown   PetscBool      showInitial, showSolution, restart, quiet, nonzInit;
33*c4762a1bSJed Brown   /* Domain and mesh definition */
34*c4762a1bSJed Brown   PetscInt       dim;               /* The topological mesh dimension */
35*c4762a1bSJed Brown   DMBoundaryType periodicity[3];    /* The domain periodicity */
36*c4762a1bSJed Brown   PetscInt       cells[3];          /* The initial domain division */
37*c4762a1bSJed Brown   char           filename[2048];    /* The optional mesh file */
38*c4762a1bSJed Brown   PetscBool      interpolate;       /* Generate intermediate mesh elements */
39*c4762a1bSJed Brown   PetscReal      refinementLimit;   /* The largest allowable cell volume */
40*c4762a1bSJed Brown   PetscBool      viewHierarchy;     /* Whether to view the hierarchy */
41*c4762a1bSJed Brown   PetscBool      simplex;           /* Simplicial mesh */
42*c4762a1bSJed Brown   /* Problem definition */
43*c4762a1bSJed Brown   BCType         bcType;
44*c4762a1bSJed Brown   CoeffType      variableCoefficient;
45*c4762a1bSJed Brown   PetscErrorCode (**exactFuncs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx);
46*c4762a1bSJed Brown   PetscBool      fieldBC;
47*c4762a1bSJed Brown   void           (**exactFields)(PetscInt, PetscInt, PetscInt,
48*c4762a1bSJed Brown                                  const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
49*c4762a1bSJed Brown                                  const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
50*c4762a1bSJed Brown                                  PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]);
51*c4762a1bSJed Brown   PetscBool      bdIntegral;       /* Compute the integral of the solution on the boundary */
52*c4762a1bSJed Brown   /* Solver */
53*c4762a1bSJed Brown   PC             pcmg;              /* This is needed for error monitoring */
54*c4762a1bSJed Brown   PetscBool      checkksp;          /* Whether to check the KSPSolve for runType == RUN_TEST */
55*c4762a1bSJed Brown } AppCtx;
56*c4762a1bSJed Brown 
57*c4762a1bSJed Brown static PetscErrorCode zero(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx)
58*c4762a1bSJed Brown {
59*c4762a1bSJed Brown   u[0] = 0.0;
60*c4762a1bSJed Brown   return 0;
61*c4762a1bSJed Brown }
62*c4762a1bSJed Brown 
63*c4762a1bSJed Brown static PetscErrorCode ecks(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx)
64*c4762a1bSJed Brown {
65*c4762a1bSJed Brown   u[0] = x[0];
66*c4762a1bSJed Brown   return 0;
67*c4762a1bSJed Brown }
68*c4762a1bSJed Brown 
69*c4762a1bSJed Brown /*
70*c4762a1bSJed Brown   In 2D for Dirichlet conditions, we use exact solution:
71*c4762a1bSJed Brown 
72*c4762a1bSJed Brown     u = x^2 + y^2
73*c4762a1bSJed Brown     f = 4
74*c4762a1bSJed Brown 
75*c4762a1bSJed Brown   so that
76*c4762a1bSJed Brown 
77*c4762a1bSJed Brown     -\Delta u + f = -4 + 4 = 0
78*c4762a1bSJed Brown 
79*c4762a1bSJed Brown   For Neumann conditions, we have
80*c4762a1bSJed Brown 
81*c4762a1bSJed Brown     -\nabla u \cdot -\hat y |_{y=0} =  (2y)|_{y=0} =  0 (bottom)
82*c4762a1bSJed Brown     -\nabla u \cdot  \hat y |_{y=1} = -(2y)|_{y=1} = -2 (top)
83*c4762a1bSJed Brown     -\nabla u \cdot -\hat x |_{x=0} =  (2x)|_{x=0} =  0 (left)
84*c4762a1bSJed Brown     -\nabla u \cdot  \hat x |_{x=1} = -(2x)|_{x=1} = -2 (right)
85*c4762a1bSJed Brown 
86*c4762a1bSJed Brown   Which we can express as
87*c4762a1bSJed Brown 
88*c4762a1bSJed Brown     \nabla u \cdot  \hat n|_\Gamma = {2 x, 2 y} \cdot \hat n = 2 (x + y)
89*c4762a1bSJed Brown 
90*c4762a1bSJed Brown   The boundary integral of this solution is (assuming we are not orienting the edges)
91*c4762a1bSJed Brown 
92*c4762a1bSJed Brown     \int^1_0 x^2 dx + \int^1_0 (1 + y^2) dy + \int^1_0 (x^2 + 1) dx + \int^1_0 y^2 dy = 1/3 + 4/3 + 4/3 + 1/3 = 3 1/3
93*c4762a1bSJed Brown */
94*c4762a1bSJed Brown static PetscErrorCode quadratic_u_2d(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx)
95*c4762a1bSJed Brown {
96*c4762a1bSJed Brown   *u = x[0]*x[0] + x[1]*x[1];
97*c4762a1bSJed Brown   return 0;
98*c4762a1bSJed Brown }
99*c4762a1bSJed Brown 
100*c4762a1bSJed Brown static void quadratic_u_field_2d(PetscInt dim, PetscInt Nf, PetscInt NfAux,
101*c4762a1bSJed Brown                                  const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
102*c4762a1bSJed Brown                                  const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
103*c4762a1bSJed Brown                                  PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar uexact[])
104*c4762a1bSJed Brown {
105*c4762a1bSJed Brown   uexact[0] = a[0];
106*c4762a1bSJed Brown }
107*c4762a1bSJed Brown 
108*c4762a1bSJed Brown static PetscErrorCode circle_u_2d(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx)
109*c4762a1bSJed Brown {
110*c4762a1bSJed Brown   const PetscReal alpha   = 500.;
111*c4762a1bSJed Brown   const PetscReal radius2 = PetscSqr(0.15);
112*c4762a1bSJed Brown   const PetscReal r2      = PetscSqr(x[0] - 0.5) + PetscSqr(x[1] - 0.5);
113*c4762a1bSJed Brown   const PetscReal xi      = alpha*(radius2 - r2);
114*c4762a1bSJed Brown 
115*c4762a1bSJed Brown   *u = PetscTanhScalar(xi) + 1.0;
116*c4762a1bSJed Brown   return 0;
117*c4762a1bSJed Brown }
118*c4762a1bSJed Brown 
119*c4762a1bSJed Brown static PetscErrorCode cross_u_2d(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx)
120*c4762a1bSJed Brown {
121*c4762a1bSJed Brown   const PetscReal alpha = 50*4;
122*c4762a1bSJed Brown   const PetscReal xy    = (x[0]-0.5)*(x[1]-0.5);
123*c4762a1bSJed Brown 
124*c4762a1bSJed Brown   *u = PetscSinReal(alpha*xy) * (alpha*PetscAbsReal(xy) < 2*PETSC_PI ? 1 : 0.01);
125*c4762a1bSJed Brown   return 0;
126*c4762a1bSJed Brown }
127*c4762a1bSJed Brown 
128*c4762a1bSJed Brown static void f0_u(PetscInt dim, PetscInt Nf, PetscInt NfAux,
129*c4762a1bSJed Brown                  const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
130*c4762a1bSJed Brown                  const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
131*c4762a1bSJed Brown                  PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[])
132*c4762a1bSJed Brown {
133*c4762a1bSJed Brown   f0[0] = 4.0;
134*c4762a1bSJed Brown }
135*c4762a1bSJed Brown 
136*c4762a1bSJed Brown static void f0_circle_u(PetscInt dim, PetscInt Nf, PetscInt NfAux,
137*c4762a1bSJed Brown                         const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
138*c4762a1bSJed Brown                         const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
139*c4762a1bSJed Brown                         PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[])
140*c4762a1bSJed Brown {
141*c4762a1bSJed Brown   const PetscReal alpha   = 500.;
142*c4762a1bSJed Brown   const PetscReal radius2 = PetscSqr(0.15);
143*c4762a1bSJed Brown   const PetscReal r2      = PetscSqr(x[0] - 0.5) + PetscSqr(x[1] - 0.5);
144*c4762a1bSJed Brown   const PetscReal xi      = alpha*(radius2 - r2);
145*c4762a1bSJed Brown 
146*c4762a1bSJed Brown   f0[0] = (-4.0*alpha - 8.0*PetscSqr(alpha)*r2*PetscTanhReal(xi)) * PetscSqr(1.0/PetscCoshReal(xi));
147*c4762a1bSJed Brown }
148*c4762a1bSJed Brown 
149*c4762a1bSJed Brown static void f0_cross_u(PetscInt dim, PetscInt Nf, PetscInt NfAux,
150*c4762a1bSJed Brown                        const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
151*c4762a1bSJed Brown                        const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
152*c4762a1bSJed Brown                        PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[])
153*c4762a1bSJed Brown {
154*c4762a1bSJed Brown   const PetscReal alpha = 50*4;
155*c4762a1bSJed Brown   const PetscReal xy    = (x[0]-0.5)*(x[1]-0.5);
156*c4762a1bSJed Brown 
157*c4762a1bSJed Brown   f0[0] = PetscSinReal(alpha*xy) * (alpha*PetscAbsReal(xy) < 2*PETSC_PI ? 1 : 0.01);
158*c4762a1bSJed Brown }
159*c4762a1bSJed Brown 
160*c4762a1bSJed Brown static void f0_bd_u(PetscInt dim, PetscInt Nf, PetscInt NfAux,
161*c4762a1bSJed Brown                     const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
162*c4762a1bSJed Brown                     const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
163*c4762a1bSJed Brown                     PetscReal t, const PetscReal x[], const PetscReal n[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[])
164*c4762a1bSJed Brown {
165*c4762a1bSJed Brown   PetscInt d;
166*c4762a1bSJed Brown   for (d = 0, f0[0] = 0.0; d < dim; ++d) f0[0] += -n[d]*2.0*x[d];
167*c4762a1bSJed Brown }
168*c4762a1bSJed Brown 
169*c4762a1bSJed Brown static void f1_bd_zero(PetscInt dim, PetscInt Nf, PetscInt NfAux,
170*c4762a1bSJed Brown                        const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
171*c4762a1bSJed Brown                        const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
172*c4762a1bSJed Brown                        PetscReal t, const PetscReal x[], const PetscReal n[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f1[])
173*c4762a1bSJed Brown {
174*c4762a1bSJed Brown   PetscInt comp;
175*c4762a1bSJed Brown   for (comp = 0; comp < dim; ++comp) f1[comp] = 0.0;
176*c4762a1bSJed Brown }
177*c4762a1bSJed Brown 
178*c4762a1bSJed Brown /* gradU[comp*dim+d] = {u_x, u_y} or {u_x, u_y, u_z} */
179*c4762a1bSJed Brown static void f1_u(PetscInt dim, PetscInt Nf, PetscInt NfAux,
180*c4762a1bSJed Brown                  const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
181*c4762a1bSJed Brown                  const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
182*c4762a1bSJed Brown                  PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f1[])
183*c4762a1bSJed Brown {
184*c4762a1bSJed Brown   PetscInt d;
185*c4762a1bSJed Brown   for (d = 0; d < dim; ++d) f1[d] = u_x[d];
186*c4762a1bSJed Brown }
187*c4762a1bSJed Brown 
188*c4762a1bSJed Brown /* < \nabla v, \nabla u + {\nabla u}^T >
189*c4762a1bSJed Brown    This just gives \nabla u, give the perdiagonal for the transpose */
190*c4762a1bSJed Brown static void g3_uu(PetscInt dim, PetscInt Nf, PetscInt NfAux,
191*c4762a1bSJed Brown                   const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
192*c4762a1bSJed Brown                   const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
193*c4762a1bSJed Brown                   PetscReal t, PetscReal u_tShift, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar g3[])
194*c4762a1bSJed Brown {
195*c4762a1bSJed Brown   PetscInt d;
196*c4762a1bSJed Brown   for (d = 0; d < dim; ++d) g3[d*dim+d] = 1.0;
197*c4762a1bSJed Brown }
198*c4762a1bSJed Brown 
199*c4762a1bSJed Brown /*
200*c4762a1bSJed Brown   In 2D for x periodicity and y Dirichlet conditions, we use exact solution:
201*c4762a1bSJed Brown 
202*c4762a1bSJed Brown     u = sin(2 pi x)
203*c4762a1bSJed Brown     f = -4 pi^2 sin(2 pi x)
204*c4762a1bSJed Brown 
205*c4762a1bSJed Brown   so that
206*c4762a1bSJed Brown 
207*c4762a1bSJed Brown     -\Delta u + f = 4 pi^2 sin(2 pi x) - 4 pi^2 sin(2 pi x) = 0
208*c4762a1bSJed Brown */
209*c4762a1bSJed Brown static PetscErrorCode xtrig_u_2d(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx)
210*c4762a1bSJed Brown {
211*c4762a1bSJed Brown   *u = PetscSinReal(2.0*PETSC_PI*x[0]);
212*c4762a1bSJed Brown   return 0;
213*c4762a1bSJed Brown }
214*c4762a1bSJed Brown 
215*c4762a1bSJed Brown static void f0_xtrig_u(PetscInt dim, PetscInt Nf, PetscInt NfAux,
216*c4762a1bSJed Brown                        const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
217*c4762a1bSJed Brown                        const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
218*c4762a1bSJed Brown                        PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[])
219*c4762a1bSJed Brown {
220*c4762a1bSJed Brown   f0[0] = -4.0*PetscSqr(PETSC_PI)*PetscSinReal(2.0*PETSC_PI*x[0]);
221*c4762a1bSJed Brown }
222*c4762a1bSJed Brown 
223*c4762a1bSJed Brown /*
224*c4762a1bSJed Brown   In 2D for x-y periodicity, we use exact solution:
225*c4762a1bSJed Brown 
226*c4762a1bSJed Brown     u = sin(2 pi x) sin(2 pi y)
227*c4762a1bSJed Brown     f = -8 pi^2 sin(2 pi x)
228*c4762a1bSJed Brown 
229*c4762a1bSJed Brown   so that
230*c4762a1bSJed Brown 
231*c4762a1bSJed Brown     -\Delta u + f = 4 pi^2 sin(2 pi x) sin(2 pi y) + 4 pi^2 sin(2 pi x) sin(2 pi y) - 8 pi^2 sin(2 pi x) = 0
232*c4762a1bSJed Brown */
233*c4762a1bSJed Brown static PetscErrorCode xytrig_u_2d(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx)
234*c4762a1bSJed Brown {
235*c4762a1bSJed Brown   *u = PetscSinReal(2.0*PETSC_PI*x[0])*PetscSinReal(2.0*PETSC_PI*x[1]);
236*c4762a1bSJed Brown   return 0;
237*c4762a1bSJed Brown }
238*c4762a1bSJed Brown 
239*c4762a1bSJed Brown static void f0_xytrig_u(PetscInt dim, PetscInt Nf, PetscInt NfAux,
240*c4762a1bSJed Brown                         const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
241*c4762a1bSJed Brown                         const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
242*c4762a1bSJed Brown                         PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[])
243*c4762a1bSJed Brown {
244*c4762a1bSJed Brown   f0[0] = -8.0*PetscSqr(PETSC_PI)*PetscSinReal(2.0*PETSC_PI*x[0]);
245*c4762a1bSJed Brown }
246*c4762a1bSJed Brown 
247*c4762a1bSJed Brown /*
248*c4762a1bSJed Brown   In 2D for Dirichlet conditions with a variable coefficient, we use exact solution:
249*c4762a1bSJed Brown 
250*c4762a1bSJed Brown     u  = x^2 + y^2
251*c4762a1bSJed Brown     f  = 6 (x + y)
252*c4762a1bSJed Brown     nu = (x + y)
253*c4762a1bSJed Brown 
254*c4762a1bSJed Brown   so that
255*c4762a1bSJed Brown 
256*c4762a1bSJed Brown     -\div \nu \grad u + f = -6 (x + y) + 6 (x + y) = 0
257*c4762a1bSJed Brown */
258*c4762a1bSJed Brown static PetscErrorCode nu_2d(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx)
259*c4762a1bSJed Brown {
260*c4762a1bSJed Brown   *u = x[0] + x[1];
261*c4762a1bSJed Brown   return 0;
262*c4762a1bSJed Brown }
263*c4762a1bSJed Brown 
264*c4762a1bSJed Brown void f0_analytic_u(PetscInt dim, PetscInt Nf, PetscInt NfAux,
265*c4762a1bSJed Brown                    const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
266*c4762a1bSJed Brown                    const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
267*c4762a1bSJed Brown                    PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[])
268*c4762a1bSJed Brown {
269*c4762a1bSJed Brown   f0[0] = 6.0*(x[0] + x[1]);
270*c4762a1bSJed Brown }
271*c4762a1bSJed Brown 
272*c4762a1bSJed Brown /* gradU[comp*dim+d] = {u_x, u_y} or {u_x, u_y, u_z} */
273*c4762a1bSJed Brown void f1_analytic_u(PetscInt dim, PetscInt Nf, PetscInt NfAux,
274*c4762a1bSJed Brown                    const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
275*c4762a1bSJed Brown                    const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
276*c4762a1bSJed Brown                    PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f1[])
277*c4762a1bSJed Brown {
278*c4762a1bSJed Brown   PetscInt d;
279*c4762a1bSJed Brown   for (d = 0; d < dim; ++d) f1[d] = (x[0] + x[1])*u_x[d];
280*c4762a1bSJed Brown }
281*c4762a1bSJed Brown 
282*c4762a1bSJed Brown void f1_field_u(PetscInt dim, PetscInt Nf, PetscInt NfAux,
283*c4762a1bSJed Brown                 const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
284*c4762a1bSJed Brown                 const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
285*c4762a1bSJed Brown                 PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f1[])
286*c4762a1bSJed Brown {
287*c4762a1bSJed Brown   PetscInt d;
288*c4762a1bSJed Brown   for (d = 0; d < dim; ++d) f1[d] = a[0]*u_x[d];
289*c4762a1bSJed Brown }
290*c4762a1bSJed Brown 
291*c4762a1bSJed Brown /* < \nabla v, \nabla u + {\nabla u}^T >
292*c4762a1bSJed Brown    This just gives \nabla u, give the perdiagonal for the transpose */
293*c4762a1bSJed Brown void g3_analytic_uu(PetscInt dim, PetscInt Nf, PetscInt NfAux,
294*c4762a1bSJed Brown                     const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
295*c4762a1bSJed Brown                     const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
296*c4762a1bSJed Brown                     PetscReal t, PetscReal u_tShift, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar g3[])
297*c4762a1bSJed Brown {
298*c4762a1bSJed Brown   PetscInt d;
299*c4762a1bSJed Brown   for (d = 0; d < dim; ++d) g3[d*dim+d] = x[0] + x[1];
300*c4762a1bSJed Brown }
301*c4762a1bSJed Brown 
302*c4762a1bSJed Brown void g3_field_uu(PetscInt dim, PetscInt Nf, PetscInt NfAux,
303*c4762a1bSJed Brown                  const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
304*c4762a1bSJed Brown                  const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
305*c4762a1bSJed Brown                  PetscReal t, PetscReal u_tShift, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar g3[])
306*c4762a1bSJed Brown {
307*c4762a1bSJed Brown   PetscInt d;
308*c4762a1bSJed Brown   for (d = 0; d < dim; ++d) g3[d*dim+d] = a[0];
309*c4762a1bSJed Brown }
310*c4762a1bSJed Brown 
311*c4762a1bSJed Brown /*
312*c4762a1bSJed Brown   In 2D for Dirichlet conditions with a nonlinear coefficient (p-Laplacian with p = 4), we use exact solution:
313*c4762a1bSJed Brown 
314*c4762a1bSJed Brown     u  = x^2 + y^2
315*c4762a1bSJed Brown     f  = 16 (x^2 + y^2)
316*c4762a1bSJed Brown     nu = 1/2 |grad u|^2
317*c4762a1bSJed Brown 
318*c4762a1bSJed Brown   so that
319*c4762a1bSJed Brown 
320*c4762a1bSJed Brown     -\div \nu \grad u + f = -16 (x^2 + y^2) + 16 (x^2 + y^2) = 0
321*c4762a1bSJed Brown */
322*c4762a1bSJed Brown void f0_analytic_nonlinear_u(PetscInt dim, PetscInt Nf, PetscInt NfAux,
323*c4762a1bSJed Brown                              const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
324*c4762a1bSJed Brown                              const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
325*c4762a1bSJed Brown                              PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[])
326*c4762a1bSJed Brown {
327*c4762a1bSJed Brown   f0[0] = 16.0*(x[0]*x[0] + x[1]*x[1]);
328*c4762a1bSJed Brown }
329*c4762a1bSJed Brown 
330*c4762a1bSJed Brown /* gradU[comp*dim+d] = {u_x, u_y} or {u_x, u_y, u_z} */
331*c4762a1bSJed Brown void f1_analytic_nonlinear_u(PetscInt dim, PetscInt Nf, PetscInt NfAux,
332*c4762a1bSJed Brown                              const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
333*c4762a1bSJed Brown                              const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
334*c4762a1bSJed Brown                              PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f1[])
335*c4762a1bSJed Brown {
336*c4762a1bSJed Brown   PetscScalar nu = 0.0;
337*c4762a1bSJed Brown   PetscInt    d;
338*c4762a1bSJed Brown   for (d = 0; d < dim; ++d) nu += u_x[d]*u_x[d];
339*c4762a1bSJed Brown   for (d = 0; d < dim; ++d) f1[d] = 0.5*nu*u_x[d];
340*c4762a1bSJed Brown }
341*c4762a1bSJed Brown 
342*c4762a1bSJed Brown /*
343*c4762a1bSJed Brown   grad (u + eps w) - grad u = eps grad w
344*c4762a1bSJed Brown 
345*c4762a1bSJed Brown   1/2 |grad (u + eps w)|^2 grad (u + eps w) - 1/2 |grad u|^2 grad u
346*c4762a1bSJed Brown = 1/2 (|grad u|^2 + 2 eps <grad u,grad w>) (grad u + eps grad w) - 1/2 |grad u|^2 grad u
347*c4762a1bSJed Brown = 1/2 (eps |grad u|^2 grad w + 2 eps <grad u,grad w> grad u)
348*c4762a1bSJed Brown = eps (1/2 |grad u|^2 grad w + grad u <grad u,grad w>)
349*c4762a1bSJed Brown */
350*c4762a1bSJed Brown void g3_analytic_nonlinear_uu(PetscInt dim, PetscInt Nf, PetscInt NfAux,
351*c4762a1bSJed Brown                               const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
352*c4762a1bSJed Brown                               const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
353*c4762a1bSJed Brown                               PetscReal t, PetscReal u_tShift, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar g3[])
354*c4762a1bSJed Brown {
355*c4762a1bSJed Brown   PetscScalar nu = 0.0;
356*c4762a1bSJed Brown   PetscInt    d, e;
357*c4762a1bSJed Brown   for (d = 0; d < dim; ++d) nu += u_x[d]*u_x[d];
358*c4762a1bSJed Brown   for (d = 0; d < dim; ++d) {
359*c4762a1bSJed Brown     g3[d*dim+d] = 0.5*nu;
360*c4762a1bSJed Brown     for (e = 0; e < dim; ++e) {
361*c4762a1bSJed Brown       g3[d*dim+e] += u_x[d]*u_x[e];
362*c4762a1bSJed Brown     }
363*c4762a1bSJed Brown   }
364*c4762a1bSJed Brown }
365*c4762a1bSJed Brown 
366*c4762a1bSJed Brown /*
367*c4762a1bSJed Brown   In 3D for Dirichlet conditions we use exact solution:
368*c4762a1bSJed Brown 
369*c4762a1bSJed Brown     u = 2/3 (x^2 + y^2 + z^2)
370*c4762a1bSJed Brown     f = 4
371*c4762a1bSJed Brown 
372*c4762a1bSJed Brown   so that
373*c4762a1bSJed Brown 
374*c4762a1bSJed Brown     -\Delta u + f = -2/3 * 6 + 4 = 0
375*c4762a1bSJed Brown 
376*c4762a1bSJed Brown   For Neumann conditions, we have
377*c4762a1bSJed Brown 
378*c4762a1bSJed Brown     -\nabla u \cdot -\hat z |_{z=0} =  (2z)|_{z=0} =  0 (bottom)
379*c4762a1bSJed Brown     -\nabla u \cdot  \hat z |_{z=1} = -(2z)|_{z=1} = -2 (top)
380*c4762a1bSJed Brown     -\nabla u \cdot -\hat y |_{y=0} =  (2y)|_{y=0} =  0 (front)
381*c4762a1bSJed Brown     -\nabla u \cdot  \hat y |_{y=1} = -(2y)|_{y=1} = -2 (back)
382*c4762a1bSJed Brown     -\nabla u \cdot -\hat x |_{x=0} =  (2x)|_{x=0} =  0 (left)
383*c4762a1bSJed Brown     -\nabla u \cdot  \hat x |_{x=1} = -(2x)|_{x=1} = -2 (right)
384*c4762a1bSJed Brown 
385*c4762a1bSJed Brown   Which we can express as
386*c4762a1bSJed Brown 
387*c4762a1bSJed Brown     \nabla u \cdot  \hat n|_\Gamma = {2 x, 2 y, 2z} \cdot \hat n = 2 (x + y + z)
388*c4762a1bSJed Brown */
389*c4762a1bSJed Brown static PetscErrorCode quadratic_u_3d(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx)
390*c4762a1bSJed Brown {
391*c4762a1bSJed Brown   *u = 2.0*(x[0]*x[0] + x[1]*x[1] + x[2]*x[2])/3.0;
392*c4762a1bSJed Brown   return 0;
393*c4762a1bSJed Brown }
394*c4762a1bSJed Brown 
395*c4762a1bSJed Brown static void quadratic_u_field_3d(PetscInt dim, PetscInt Nf, PetscInt NfAux,
396*c4762a1bSJed Brown                                  const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
397*c4762a1bSJed Brown                                  const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
398*c4762a1bSJed Brown                                  PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar uexact[])
399*c4762a1bSJed Brown {
400*c4762a1bSJed Brown   uexact[0] = a[0];
401*c4762a1bSJed Brown }
402*c4762a1bSJed Brown 
403*c4762a1bSJed Brown static void bd_integral_2d(PetscInt dim, PetscInt Nf, PetscInt NfAux,
404*c4762a1bSJed Brown                            const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
405*c4762a1bSJed Brown                            const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
406*c4762a1bSJed Brown                            PetscReal t, const PetscReal x[], const PetscReal n[], PetscInt numConstants, const PetscScalar constants[], PetscScalar *uint)
407*c4762a1bSJed Brown {
408*c4762a1bSJed Brown   uint[0] = u[0];
409*c4762a1bSJed Brown }
410*c4762a1bSJed Brown 
411*c4762a1bSJed Brown static PetscErrorCode ProcessOptions(MPI_Comm comm, AppCtx *options)
412*c4762a1bSJed Brown {
413*c4762a1bSJed Brown   const char    *bcTypes[3]  = {"neumann", "dirichlet", "none"};
414*c4762a1bSJed Brown   const char    *runTypes[4] = {"full", "exact", "test", "perf"};
415*c4762a1bSJed Brown   const char    *coeffTypes[6] = {"none", "analytic", "field", "nonlinear", "circle", "cross"};
416*c4762a1bSJed Brown   PetscInt       bd, bc, run, coeff, n;
417*c4762a1bSJed Brown   PetscBool      flg;
418*c4762a1bSJed Brown   PetscErrorCode ierr;
419*c4762a1bSJed Brown 
420*c4762a1bSJed Brown   PetscFunctionBeginUser;
421*c4762a1bSJed Brown   options->debug               = 0;
422*c4762a1bSJed Brown   options->runType             = RUN_FULL;
423*c4762a1bSJed Brown   options->dim                 = 2;
424*c4762a1bSJed Brown   options->periodicity[0]      = DM_BOUNDARY_NONE;
425*c4762a1bSJed Brown   options->periodicity[1]      = DM_BOUNDARY_NONE;
426*c4762a1bSJed Brown   options->periodicity[2]      = DM_BOUNDARY_NONE;
427*c4762a1bSJed Brown   options->cells[0]            = 2;
428*c4762a1bSJed Brown   options->cells[1]            = 2;
429*c4762a1bSJed Brown   options->cells[2]            = 2;
430*c4762a1bSJed Brown   options->filename[0]         = '\0';
431*c4762a1bSJed Brown   options->interpolate         = PETSC_TRUE;
432*c4762a1bSJed Brown   options->refinementLimit     = 0.0;
433*c4762a1bSJed Brown   options->bcType              = DIRICHLET;
434*c4762a1bSJed Brown   options->variableCoefficient = COEFF_NONE;
435*c4762a1bSJed Brown   options->fieldBC             = PETSC_FALSE;
436*c4762a1bSJed Brown   options->jacobianMF          = PETSC_FALSE;
437*c4762a1bSJed Brown   options->showInitial         = PETSC_FALSE;
438*c4762a1bSJed Brown   options->showSolution        = PETSC_FALSE;
439*c4762a1bSJed Brown   options->restart             = PETSC_FALSE;
440*c4762a1bSJed Brown   options->viewHierarchy       = PETSC_FALSE;
441*c4762a1bSJed Brown   options->simplex             = PETSC_TRUE;
442*c4762a1bSJed Brown   options->quiet               = PETSC_FALSE;
443*c4762a1bSJed Brown   options->nonzInit            = PETSC_FALSE;
444*c4762a1bSJed Brown   options->bdIntegral          = PETSC_FALSE;
445*c4762a1bSJed Brown   options->checkksp            = PETSC_FALSE;
446*c4762a1bSJed Brown 
447*c4762a1bSJed Brown   ierr = PetscOptionsBegin(comm, "", "Poisson Problem Options", "DMPLEX");CHKERRQ(ierr);
448*c4762a1bSJed Brown   ierr = PetscOptionsInt("-debug", "The debugging level", "ex12.c", options->debug, &options->debug, NULL);CHKERRQ(ierr);
449*c4762a1bSJed Brown   run  = options->runType;
450*c4762a1bSJed Brown   ierr = PetscOptionsEList("-run_type", "The run type", "ex12.c", runTypes, 4, runTypes[options->runType], &run, NULL);CHKERRQ(ierr);
451*c4762a1bSJed Brown 
452*c4762a1bSJed Brown   options->runType = (RunType) run;
453*c4762a1bSJed Brown 
454*c4762a1bSJed Brown   ierr = PetscOptionsInt("-dim", "The topological mesh dimension", "ex12.c", options->dim, &options->dim, NULL);CHKERRQ(ierr);
455*c4762a1bSJed Brown   bd = options->periodicity[0];
456*c4762a1bSJed Brown   ierr = PetscOptionsEList("-x_periodicity", "The x-boundary periodicity", "ex12.c", DMBoundaryTypes, 5, DMBoundaryTypes[options->periodicity[0]], &bd, NULL);CHKERRQ(ierr);
457*c4762a1bSJed Brown   options->periodicity[0] = (DMBoundaryType) bd;
458*c4762a1bSJed Brown   bd = options->periodicity[1];
459*c4762a1bSJed Brown   ierr = PetscOptionsEList("-y_periodicity", "The y-boundary periodicity", "ex12.c", DMBoundaryTypes, 5, DMBoundaryTypes[options->periodicity[1]], &bd, NULL);CHKERRQ(ierr);
460*c4762a1bSJed Brown   options->periodicity[1] = (DMBoundaryType) bd;
461*c4762a1bSJed Brown   bd = options->periodicity[2];
462*c4762a1bSJed Brown   ierr = PetscOptionsEList("-z_periodicity", "The z-boundary periodicity", "ex12.c", DMBoundaryTypes, 5, DMBoundaryTypes[options->periodicity[2]], &bd, NULL);CHKERRQ(ierr);
463*c4762a1bSJed Brown   options->periodicity[2] = (DMBoundaryType) bd;
464*c4762a1bSJed Brown   n = 3;
465*c4762a1bSJed Brown   ierr = PetscOptionsIntArray("-cells", "The initial mesh division", "ex12.c", options->cells, &n, NULL);CHKERRQ(ierr);
466*c4762a1bSJed Brown   ierr = PetscOptionsString("-f", "Mesh filename to read", "ex12.c", options->filename, options->filename, sizeof(options->filename), &flg);CHKERRQ(ierr);
467*c4762a1bSJed Brown   ierr = PetscOptionsBool("-interpolate", "Generate intermediate mesh elements", "ex12.c", options->interpolate, &options->interpolate, NULL);CHKERRQ(ierr);
468*c4762a1bSJed Brown   ierr = PetscOptionsReal("-refinement_limit", "The largest allowable cell volume", "ex12.c", options->refinementLimit, &options->refinementLimit, NULL);CHKERRQ(ierr);
469*c4762a1bSJed Brown   bc   = options->bcType;
470*c4762a1bSJed Brown   ierr = PetscOptionsEList("-bc_type","Type of boundary condition","ex12.c",bcTypes,3,bcTypes[options->bcType],&bc,NULL);CHKERRQ(ierr);
471*c4762a1bSJed Brown   options->bcType = (BCType) bc;
472*c4762a1bSJed Brown   coeff = options->variableCoefficient;
473*c4762a1bSJed Brown   ierr = PetscOptionsEList("-variable_coefficient","Type of variable coefficent","ex12.c",coeffTypes,6,coeffTypes[options->variableCoefficient],&coeff,NULL);CHKERRQ(ierr);
474*c4762a1bSJed Brown   options->variableCoefficient = (CoeffType) coeff;
475*c4762a1bSJed Brown 
476*c4762a1bSJed Brown   ierr = PetscOptionsBool("-field_bc", "Use a field representation for the BC", "ex12.c", options->fieldBC, &options->fieldBC, NULL);CHKERRQ(ierr);
477*c4762a1bSJed Brown   ierr = PetscOptionsBool("-jacobian_mf", "Calculate the action of the Jacobian on the fly", "ex12.c", options->jacobianMF, &options->jacobianMF, NULL);CHKERRQ(ierr);
478*c4762a1bSJed Brown   ierr = PetscOptionsBool("-show_initial", "Output the initial guess for verification", "ex12.c", options->showInitial, &options->showInitial, NULL);CHKERRQ(ierr);
479*c4762a1bSJed Brown   ierr = PetscOptionsBool("-show_solution", "Output the solution for verification", "ex12.c", options->showSolution, &options->showSolution, NULL);CHKERRQ(ierr);
480*c4762a1bSJed Brown   ierr = PetscOptionsBool("-restart", "Read in the mesh and solution from a file", "ex12.c", options->restart, &options->restart, NULL);CHKERRQ(ierr);
481*c4762a1bSJed Brown   ierr = PetscOptionsBool("-dm_view_hierarchy", "View the coarsened hierarchy", "ex12.c", options->viewHierarchy, &options->viewHierarchy, NULL);CHKERRQ(ierr);
482*c4762a1bSJed Brown   ierr = PetscOptionsBool("-simplex", "Simplicial (true) or tensor (false) mesh", "ex12.c", options->simplex, &options->simplex, NULL);CHKERRQ(ierr);
483*c4762a1bSJed Brown   ierr = PetscOptionsBool("-quiet", "Don't print any vecs", "ex12.c", options->quiet, &options->quiet, NULL);CHKERRQ(ierr);
484*c4762a1bSJed Brown   ierr = PetscOptionsBool("-nonzero_initial_guess", "nonzero intial guess", "ex12.c", options->nonzInit, &options->nonzInit, NULL);CHKERRQ(ierr);
485*c4762a1bSJed Brown   ierr = PetscOptionsBool("-bd_integral", "Compute the integral of the solution on the boundary", "ex12.c", options->bdIntegral, &options->bdIntegral, NULL);CHKERRQ(ierr);
486*c4762a1bSJed Brown   if (options->runType == RUN_TEST) {
487*c4762a1bSJed Brown     ierr = PetscOptionsBool("-run_test_check_ksp", "Check solution of KSP", "ex12.c", options->checkksp, &options->checkksp, NULL);CHKERRQ(ierr);
488*c4762a1bSJed Brown   }
489*c4762a1bSJed Brown   ierr = PetscOptionsEnd();
490*c4762a1bSJed Brown   ierr = PetscLogEventRegister("CreateMesh", DM_CLASSID, &options->createMeshEvent);CHKERRQ(ierr);
491*c4762a1bSJed Brown   PetscFunctionReturn(0);
492*c4762a1bSJed Brown }
493*c4762a1bSJed Brown 
494*c4762a1bSJed Brown static PetscErrorCode CreateBCLabel(DM dm, const char name[])
495*c4762a1bSJed Brown {
496*c4762a1bSJed Brown   DMLabel        label;
497*c4762a1bSJed Brown   PetscErrorCode ierr;
498*c4762a1bSJed Brown 
499*c4762a1bSJed Brown   PetscFunctionBeginUser;
500*c4762a1bSJed Brown   ierr = DMCreateLabel(dm, name);CHKERRQ(ierr);
501*c4762a1bSJed Brown   ierr = DMGetLabel(dm, name, &label);CHKERRQ(ierr);
502*c4762a1bSJed Brown   ierr = DMPlexMarkBoundaryFaces(dm, 1, label);CHKERRQ(ierr);
503*c4762a1bSJed Brown   ierr = DMPlexLabelComplete(dm, label);CHKERRQ(ierr);
504*c4762a1bSJed Brown   PetscFunctionReturn(0);
505*c4762a1bSJed Brown }
506*c4762a1bSJed Brown 
507*c4762a1bSJed Brown static PetscErrorCode CreateMesh(MPI_Comm comm, AppCtx *user, DM *dm)
508*c4762a1bSJed Brown {
509*c4762a1bSJed Brown   PetscInt       dim             = user->dim;
510*c4762a1bSJed Brown   const char    *filename        = user->filename;
511*c4762a1bSJed Brown   PetscBool      interpolate     = user->interpolate;
512*c4762a1bSJed Brown   PetscReal      refinementLimit = user->refinementLimit;
513*c4762a1bSJed Brown   size_t         len;
514*c4762a1bSJed Brown   PetscErrorCode ierr;
515*c4762a1bSJed Brown 
516*c4762a1bSJed Brown   PetscFunctionBeginUser;
517*c4762a1bSJed Brown   ierr = PetscLogEventBegin(user->createMeshEvent,0,0,0,0);CHKERRQ(ierr);
518*c4762a1bSJed Brown   ierr = PetscStrlen(filename, &len);CHKERRQ(ierr);
519*c4762a1bSJed Brown   if (!len) {
520*c4762a1bSJed Brown     PetscInt d;
521*c4762a1bSJed Brown 
522*c4762a1bSJed Brown     if (user->periodicity[0] || user->periodicity[1] || user->periodicity[2]) for (d = 0; d < dim; ++d) user->cells[d] = PetscMax(user->cells[d], 3);
523*c4762a1bSJed Brown     ierr = DMPlexCreateBoxMesh(comm, dim, user->simplex, user->cells, NULL, NULL, user->periodicity, interpolate, dm);CHKERRQ(ierr);
524*c4762a1bSJed Brown     ierr = PetscObjectSetName((PetscObject) *dm, "Mesh");CHKERRQ(ierr);
525*c4762a1bSJed Brown   } else {
526*c4762a1bSJed Brown     ierr = DMPlexCreateFromFile(comm, filename, interpolate, dm);CHKERRQ(ierr);
527*c4762a1bSJed Brown     ierr = DMPlexSetRefinementUniform(*dm, PETSC_FALSE);CHKERRQ(ierr);
528*c4762a1bSJed Brown   }
529*c4762a1bSJed Brown   {
530*c4762a1bSJed Brown     PetscPartitioner part;
531*c4762a1bSJed Brown     DM               refinedMesh     = NULL;
532*c4762a1bSJed Brown     DM               distributedMesh = NULL;
533*c4762a1bSJed Brown 
534*c4762a1bSJed Brown     /* Refine mesh using a volume constraint */
535*c4762a1bSJed Brown     if (refinementLimit > 0.0) {
536*c4762a1bSJed Brown       ierr = DMPlexSetRefinementLimit(*dm, refinementLimit);CHKERRQ(ierr);
537*c4762a1bSJed Brown       ierr = DMRefine(*dm, comm, &refinedMesh);CHKERRQ(ierr);
538*c4762a1bSJed Brown       if (refinedMesh) {
539*c4762a1bSJed Brown         const char *name;
540*c4762a1bSJed Brown 
541*c4762a1bSJed Brown         ierr = PetscObjectGetName((PetscObject) *dm,         &name);CHKERRQ(ierr);
542*c4762a1bSJed Brown         ierr = PetscObjectSetName((PetscObject) refinedMesh,  name);CHKERRQ(ierr);
543*c4762a1bSJed Brown         ierr = DMDestroy(dm);CHKERRQ(ierr);
544*c4762a1bSJed Brown         *dm  = refinedMesh;
545*c4762a1bSJed Brown       }
546*c4762a1bSJed Brown     }
547*c4762a1bSJed Brown     /* Distribute mesh over processes */
548*c4762a1bSJed Brown     ierr = DMPlexGetPartitioner(*dm,&part);CHKERRQ(ierr);
549*c4762a1bSJed Brown     ierr = PetscPartitionerSetFromOptions(part);CHKERRQ(ierr);
550*c4762a1bSJed Brown     ierr = DMPlexDistribute(*dm, 0, NULL, &distributedMesh);CHKERRQ(ierr);
551*c4762a1bSJed Brown     if (distributedMesh) {
552*c4762a1bSJed Brown       ierr = DMDestroy(dm);CHKERRQ(ierr);
553*c4762a1bSJed Brown       *dm  = distributedMesh;
554*c4762a1bSJed Brown     }
555*c4762a1bSJed Brown   }
556*c4762a1bSJed Brown   if (interpolate) {
557*c4762a1bSJed Brown     if (user->bcType == NEUMANN) {
558*c4762a1bSJed Brown       DMLabel   label;
559*c4762a1bSJed Brown 
560*c4762a1bSJed Brown       ierr = DMCreateLabel(*dm, "boundary");CHKERRQ(ierr);
561*c4762a1bSJed Brown       ierr = DMGetLabel(*dm, "boundary", &label);CHKERRQ(ierr);
562*c4762a1bSJed Brown       ierr = DMPlexMarkBoundaryFaces(*dm, 1, label);CHKERRQ(ierr);
563*c4762a1bSJed Brown     } else if (user->bcType == DIRICHLET) {
564*c4762a1bSJed Brown       PetscBool hasLabel;
565*c4762a1bSJed Brown 
566*c4762a1bSJed Brown       ierr = DMHasLabel(*dm,"marker",&hasLabel);CHKERRQ(ierr);
567*c4762a1bSJed Brown       if (!hasLabel) {ierr = CreateBCLabel(*dm, "marker");CHKERRQ(ierr);}
568*c4762a1bSJed Brown     }
569*c4762a1bSJed Brown   }
570*c4762a1bSJed Brown   {
571*c4762a1bSJed Brown     char      convType[256];
572*c4762a1bSJed Brown     PetscBool flg;
573*c4762a1bSJed Brown 
574*c4762a1bSJed Brown     ierr = PetscOptionsBegin(comm, "", "Mesh conversion options", "DMPLEX");CHKERRQ(ierr);
575*c4762a1bSJed Brown     ierr = PetscOptionsFList("-dm_plex_convert_type","Convert DMPlex to another format","ex12",DMList,DMPLEX,convType,256,&flg);CHKERRQ(ierr);
576*c4762a1bSJed Brown     ierr = PetscOptionsEnd();
577*c4762a1bSJed Brown     if (flg) {
578*c4762a1bSJed Brown       DM dmConv;
579*c4762a1bSJed Brown 
580*c4762a1bSJed Brown       ierr = DMConvert(*dm,convType,&dmConv);CHKERRQ(ierr);
581*c4762a1bSJed Brown       if (dmConv) {
582*c4762a1bSJed Brown         ierr = DMDestroy(dm);CHKERRQ(ierr);
583*c4762a1bSJed Brown         *dm  = dmConv;
584*c4762a1bSJed Brown       }
585*c4762a1bSJed Brown     }
586*c4762a1bSJed Brown   }
587*c4762a1bSJed Brown   ierr = DMLocalizeCoordinates(*dm);CHKERRQ(ierr); /* needed for periodic */
588*c4762a1bSJed Brown   ierr = DMSetFromOptions(*dm);CHKERRQ(ierr);
589*c4762a1bSJed Brown   ierr = DMViewFromOptions(*dm, NULL, "-dm_view");CHKERRQ(ierr);
590*c4762a1bSJed Brown   if (user->viewHierarchy) {
591*c4762a1bSJed Brown     DM       cdm = *dm;
592*c4762a1bSJed Brown     PetscInt i   = 0;
593*c4762a1bSJed Brown     char     buf[256];
594*c4762a1bSJed Brown 
595*c4762a1bSJed Brown     while (cdm) {
596*c4762a1bSJed Brown       ierr = DMSetUp(cdm);CHKERRQ(ierr);
597*c4762a1bSJed Brown       ierr = DMGetCoarseDM(cdm, &cdm);CHKERRQ(ierr);
598*c4762a1bSJed Brown       ++i;
599*c4762a1bSJed Brown     }
600*c4762a1bSJed Brown     cdm = *dm;
601*c4762a1bSJed Brown     while (cdm) {
602*c4762a1bSJed Brown       PetscViewer       viewer;
603*c4762a1bSJed Brown       PetscBool   isHDF5, isVTK;
604*c4762a1bSJed Brown 
605*c4762a1bSJed Brown       --i;
606*c4762a1bSJed Brown       ierr = PetscViewerCreate(comm,&viewer);CHKERRQ(ierr);
607*c4762a1bSJed Brown       ierr = PetscViewerSetType(viewer,PETSCVIEWERHDF5);CHKERRQ(ierr);
608*c4762a1bSJed Brown       ierr = PetscViewerSetOptionsPrefix(viewer,"hierarchy_");CHKERRQ(ierr);
609*c4762a1bSJed Brown       ierr = PetscViewerSetFromOptions(viewer);CHKERRQ(ierr);
610*c4762a1bSJed Brown       ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5,&isHDF5);CHKERRQ(ierr);
611*c4762a1bSJed Brown       ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERVTK,&isVTK);CHKERRQ(ierr);
612*c4762a1bSJed Brown       if (isHDF5) {
613*c4762a1bSJed Brown         ierr = PetscSNPrintf(buf, 256, "ex12-%d.h5", i);CHKERRQ(ierr);
614*c4762a1bSJed Brown       } else if (isVTK) {
615*c4762a1bSJed Brown         ierr = PetscSNPrintf(buf, 256, "ex12-%d.vtu", i);CHKERRQ(ierr);
616*c4762a1bSJed Brown         ierr = PetscViewerPushFormat(viewer,PETSC_VIEWER_VTK_VTU);CHKERRQ(ierr);
617*c4762a1bSJed Brown       } else {
618*c4762a1bSJed Brown         ierr = PetscSNPrintf(buf, 256, "ex12-%d", i);CHKERRQ(ierr);
619*c4762a1bSJed Brown       }
620*c4762a1bSJed Brown       ierr = PetscViewerFileSetMode(viewer,FILE_MODE_WRITE);CHKERRQ(ierr);
621*c4762a1bSJed Brown       ierr = PetscViewerFileSetName(viewer,buf);CHKERRQ(ierr);
622*c4762a1bSJed Brown       ierr = DMView(cdm, viewer);CHKERRQ(ierr);
623*c4762a1bSJed Brown       ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr);
624*c4762a1bSJed Brown       ierr = DMGetCoarseDM(cdm, &cdm);CHKERRQ(ierr);
625*c4762a1bSJed Brown     }
626*c4762a1bSJed Brown   }
627*c4762a1bSJed Brown   ierr = PetscLogEventEnd(user->createMeshEvent,0,0,0,0);CHKERRQ(ierr);
628*c4762a1bSJed Brown   PetscFunctionReturn(0);
629*c4762a1bSJed Brown }
630*c4762a1bSJed Brown 
631*c4762a1bSJed Brown static PetscErrorCode SetupProblem(DM dm, AppCtx *user)
632*c4762a1bSJed Brown {
633*c4762a1bSJed Brown   PetscDS        prob;
634*c4762a1bSJed Brown   const PetscInt id = 1;
635*c4762a1bSJed Brown   PetscErrorCode ierr;
636*c4762a1bSJed Brown 
637*c4762a1bSJed Brown   PetscFunctionBeginUser;
638*c4762a1bSJed Brown   ierr = DMGetDS(dm, &prob);CHKERRQ(ierr);
639*c4762a1bSJed Brown   switch (user->variableCoefficient) {
640*c4762a1bSJed Brown   case COEFF_NONE:
641*c4762a1bSJed Brown     if (user->periodicity[0]) {
642*c4762a1bSJed Brown       if (user->periodicity[1]) {
643*c4762a1bSJed Brown         ierr = PetscDSSetResidual(prob, 0, f0_xytrig_u, f1_u);CHKERRQ(ierr);
644*c4762a1bSJed Brown         ierr = PetscDSSetJacobian(prob, 0, 0, NULL, NULL, NULL, g3_uu);CHKERRQ(ierr);
645*c4762a1bSJed Brown       } else {
646*c4762a1bSJed Brown         ierr = PetscDSSetResidual(prob, 0, f0_xtrig_u,  f1_u);CHKERRQ(ierr);
647*c4762a1bSJed Brown         ierr = PetscDSSetJacobian(prob, 0, 0, NULL, NULL, NULL, g3_uu);CHKERRQ(ierr);
648*c4762a1bSJed Brown       }
649*c4762a1bSJed Brown     } else {
650*c4762a1bSJed Brown       ierr = PetscDSSetResidual(prob, 0, f0_u, f1_u);CHKERRQ(ierr);
651*c4762a1bSJed Brown       ierr = PetscDSSetJacobian(prob, 0, 0, NULL, NULL, NULL, g3_uu);CHKERRQ(ierr);
652*c4762a1bSJed Brown     }
653*c4762a1bSJed Brown     break;
654*c4762a1bSJed Brown   case COEFF_ANALYTIC:
655*c4762a1bSJed Brown     ierr = PetscDSSetResidual(prob, 0, f0_analytic_u, f1_analytic_u);CHKERRQ(ierr);
656*c4762a1bSJed Brown     ierr = PetscDSSetJacobian(prob, 0, 0, NULL, NULL, NULL, g3_analytic_uu);CHKERRQ(ierr);
657*c4762a1bSJed Brown     break;
658*c4762a1bSJed Brown   case COEFF_FIELD:
659*c4762a1bSJed Brown     ierr = PetscDSSetResidual(prob, 0, f0_analytic_u, f1_field_u);CHKERRQ(ierr);
660*c4762a1bSJed Brown     ierr = PetscDSSetJacobian(prob, 0, 0, NULL, NULL, NULL, g3_field_uu);CHKERRQ(ierr);
661*c4762a1bSJed Brown     break;
662*c4762a1bSJed Brown   case COEFF_NONLINEAR:
663*c4762a1bSJed Brown     ierr = PetscDSSetResidual(prob, 0, f0_analytic_nonlinear_u, f1_analytic_nonlinear_u);CHKERRQ(ierr);
664*c4762a1bSJed Brown     ierr = PetscDSSetJacobian(prob, 0, 0, NULL, NULL, NULL, g3_analytic_nonlinear_uu);CHKERRQ(ierr);
665*c4762a1bSJed Brown     break;
666*c4762a1bSJed Brown   case COEFF_CIRCLE:
667*c4762a1bSJed Brown     ierr = PetscDSSetResidual(prob, 0, f0_circle_u, f1_u);CHKERRQ(ierr);
668*c4762a1bSJed Brown     ierr = PetscDSSetJacobian(prob, 0, 0, NULL, NULL, NULL, g3_uu);CHKERRQ(ierr);
669*c4762a1bSJed Brown     break;
670*c4762a1bSJed Brown   case COEFF_CROSS:
671*c4762a1bSJed Brown     ierr = PetscDSSetResidual(prob, 0, f0_cross_u, f1_u);CHKERRQ(ierr);
672*c4762a1bSJed Brown     ierr = PetscDSSetJacobian(prob, 0, 0, NULL, NULL, NULL, g3_uu);CHKERRQ(ierr);
673*c4762a1bSJed Brown     break;
674*c4762a1bSJed Brown   default: SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid variable coefficient type %d", user->variableCoefficient);
675*c4762a1bSJed Brown   }
676*c4762a1bSJed Brown   switch (user->dim) {
677*c4762a1bSJed Brown   case 2:
678*c4762a1bSJed Brown     switch (user->variableCoefficient) {
679*c4762a1bSJed Brown     case COEFF_CIRCLE:
680*c4762a1bSJed Brown       user->exactFuncs[0]  = circle_u_2d;break;
681*c4762a1bSJed Brown     case COEFF_CROSS:
682*c4762a1bSJed Brown       user->exactFuncs[0]  = cross_u_2d;break;
683*c4762a1bSJed Brown     default:
684*c4762a1bSJed Brown       if (user->periodicity[0]) {
685*c4762a1bSJed Brown         if (user->periodicity[1]) {
686*c4762a1bSJed Brown           user->exactFuncs[0] = xytrig_u_2d;
687*c4762a1bSJed Brown         } else {
688*c4762a1bSJed Brown           user->exactFuncs[0] = xtrig_u_2d;
689*c4762a1bSJed Brown         }
690*c4762a1bSJed Brown       } else {
691*c4762a1bSJed Brown         user->exactFuncs[0]  = quadratic_u_2d;
692*c4762a1bSJed Brown         user->exactFields[0] = quadratic_u_field_2d;
693*c4762a1bSJed Brown       }
694*c4762a1bSJed Brown     }
695*c4762a1bSJed Brown     if (user->bcType == NEUMANN) {ierr = PetscDSSetBdResidual(prob, 0, f0_bd_u, f1_bd_zero);CHKERRQ(ierr);}
696*c4762a1bSJed Brown     break;
697*c4762a1bSJed Brown   case 3:
698*c4762a1bSJed Brown     user->exactFuncs[0]  = quadratic_u_3d;
699*c4762a1bSJed Brown     user->exactFields[0] = quadratic_u_field_3d;
700*c4762a1bSJed Brown     if (user->bcType == NEUMANN) {ierr = PetscDSSetBdResidual(prob, 0, f0_bd_u, f1_bd_zero);CHKERRQ(ierr);}
701*c4762a1bSJed Brown     break;
702*c4762a1bSJed Brown   default:
703*c4762a1bSJed Brown     SETERRQ1(PETSC_COMM_WORLD, PETSC_ERR_ARG_OUTOFRANGE, "Invalid dimension %d", user->dim);
704*c4762a1bSJed Brown   }
705*c4762a1bSJed Brown   if (user->bcType != NONE) {
706*c4762a1bSJed Brown     ierr = PetscDSAddBoundary(prob, user->bcType == DIRICHLET ? (user->fieldBC ? DM_BC_ESSENTIAL_FIELD : DM_BC_ESSENTIAL) : DM_BC_NATURAL,
707*c4762a1bSJed Brown                               "wall", user->bcType == DIRICHLET ? "marker" : "boundary", 0, 0, NULL,
708*c4762a1bSJed Brown                               user->fieldBC ? (void (*)(void)) user->exactFields[0] : (void (*)(void)) user->exactFuncs[0], 1, &id, user);CHKERRQ(ierr);
709*c4762a1bSJed Brown   }
710*c4762a1bSJed Brown   ierr = PetscDSSetExactSolution(prob, 0, user->exactFuncs[0], user);CHKERRQ(ierr);
711*c4762a1bSJed Brown   PetscFunctionReturn(0);
712*c4762a1bSJed Brown }
713*c4762a1bSJed Brown 
714*c4762a1bSJed Brown static PetscErrorCode SetupMaterial(DM dm, DM dmAux, AppCtx *user)
715*c4762a1bSJed Brown {
716*c4762a1bSJed Brown   PetscErrorCode (*matFuncs[1])(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar u[], void *ctx) = {nu_2d};
717*c4762a1bSJed Brown   Vec            nu;
718*c4762a1bSJed Brown   PetscErrorCode ierr;
719*c4762a1bSJed Brown 
720*c4762a1bSJed Brown   PetscFunctionBegin;
721*c4762a1bSJed Brown   ierr = DMCreateLocalVector(dmAux, &nu);CHKERRQ(ierr);
722*c4762a1bSJed Brown   ierr = DMProjectFunctionLocal(dmAux, 0.0, matFuncs, NULL, INSERT_ALL_VALUES, nu);CHKERRQ(ierr);
723*c4762a1bSJed Brown   ierr = PetscObjectCompose((PetscObject) dm, "A", (PetscObject) nu);CHKERRQ(ierr);
724*c4762a1bSJed Brown   ierr = VecDestroy(&nu);CHKERRQ(ierr);
725*c4762a1bSJed Brown   PetscFunctionReturn(0);
726*c4762a1bSJed Brown }
727*c4762a1bSJed Brown 
728*c4762a1bSJed Brown static PetscErrorCode SetupBC(DM dm, DM dmAux, AppCtx *user)
729*c4762a1bSJed Brown {
730*c4762a1bSJed Brown   PetscErrorCode (*bcFuncs[1])(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar u[], void *ctx);
731*c4762a1bSJed Brown   Vec            uexact;
732*c4762a1bSJed Brown   PetscInt       dim;
733*c4762a1bSJed Brown   PetscErrorCode ierr;
734*c4762a1bSJed Brown 
735*c4762a1bSJed Brown   PetscFunctionBegin;
736*c4762a1bSJed Brown   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
737*c4762a1bSJed Brown   if (dim == 2) bcFuncs[0] = quadratic_u_2d;
738*c4762a1bSJed Brown   else          bcFuncs[0] = quadratic_u_3d;
739*c4762a1bSJed Brown   ierr = DMCreateLocalVector(dmAux, &uexact);CHKERRQ(ierr);
740*c4762a1bSJed Brown   ierr = DMProjectFunctionLocal(dmAux, 0.0, bcFuncs, NULL, INSERT_ALL_VALUES, uexact);CHKERRQ(ierr);
741*c4762a1bSJed Brown   ierr = PetscObjectCompose((PetscObject) dm, "A", (PetscObject) uexact);CHKERRQ(ierr);
742*c4762a1bSJed Brown   ierr = VecDestroy(&uexact);CHKERRQ(ierr);
743*c4762a1bSJed Brown   PetscFunctionReturn(0);
744*c4762a1bSJed Brown }
745*c4762a1bSJed Brown 
746*c4762a1bSJed Brown static PetscErrorCode SetupAuxDM(DM dm, PetscFE feAux, AppCtx *user)
747*c4762a1bSJed Brown {
748*c4762a1bSJed Brown   DM             dmAux, coordDM;
749*c4762a1bSJed Brown   PetscErrorCode ierr;
750*c4762a1bSJed Brown 
751*c4762a1bSJed Brown   PetscFunctionBegin;
752*c4762a1bSJed Brown   /* MUST call DMGetCoordinateDM() in order to get p4est setup if present */
753*c4762a1bSJed Brown   ierr = DMGetCoordinateDM(dm, &coordDM);CHKERRQ(ierr);
754*c4762a1bSJed Brown   if (!feAux) PetscFunctionReturn(0);
755*c4762a1bSJed Brown   ierr = DMClone(dm, &dmAux);CHKERRQ(ierr);
756*c4762a1bSJed Brown   ierr = PetscObjectCompose((PetscObject) dm, "dmAux", (PetscObject) dmAux);CHKERRQ(ierr);
757*c4762a1bSJed Brown   ierr = DMSetCoordinateDM(dmAux, coordDM);CHKERRQ(ierr);
758*c4762a1bSJed Brown   ierr = DMSetField(dmAux, 0, NULL, (PetscObject) feAux);CHKERRQ(ierr);
759*c4762a1bSJed Brown   ierr = DMCreateDS(dmAux);CHKERRQ(ierr);
760*c4762a1bSJed Brown   if (user->fieldBC) {ierr = SetupBC(dm, dmAux, user);CHKERRQ(ierr);}
761*c4762a1bSJed Brown   else               {ierr = SetupMaterial(dm, dmAux, user);CHKERRQ(ierr);}
762*c4762a1bSJed Brown   ierr = DMDestroy(&dmAux);CHKERRQ(ierr);
763*c4762a1bSJed Brown   PetscFunctionReturn(0);
764*c4762a1bSJed Brown }
765*c4762a1bSJed Brown 
766*c4762a1bSJed Brown static PetscErrorCode SetupDiscretization(DM dm, AppCtx *user)
767*c4762a1bSJed Brown {
768*c4762a1bSJed Brown   DM             cdm = dm;
769*c4762a1bSJed Brown   const PetscInt dim = user->dim;
770*c4762a1bSJed Brown   PetscFE        fe, feAux = NULL;
771*c4762a1bSJed Brown   PetscBool      simplex   = user->simplex;
772*c4762a1bSJed Brown   MPI_Comm       comm;
773*c4762a1bSJed Brown   PetscErrorCode ierr;
774*c4762a1bSJed Brown 
775*c4762a1bSJed Brown   PetscFunctionBeginUser;
776*c4762a1bSJed Brown   /* Create finite element for each field and auxiliary field */
777*c4762a1bSJed Brown   ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr);
778*c4762a1bSJed Brown   ierr = PetscFECreateDefault(comm, dim, 1, simplex, NULL, -1, &fe);CHKERRQ(ierr);
779*c4762a1bSJed Brown   ierr = PetscObjectSetName((PetscObject) fe, "potential");CHKERRQ(ierr);
780*c4762a1bSJed Brown   if (user->variableCoefficient == COEFF_FIELD) {
781*c4762a1bSJed Brown     ierr = PetscFECreateDefault(comm, dim, 1, simplex, "mat_", -1, &feAux);CHKERRQ(ierr);
782*c4762a1bSJed Brown     ierr = PetscFECopyQuadrature(fe, feAux);CHKERRQ(ierr);
783*c4762a1bSJed Brown   } else if (user->fieldBC) {
784*c4762a1bSJed Brown     ierr = PetscFECreateDefault(comm, dim, 1, simplex, "bc_", -1, &feAux);CHKERRQ(ierr);
785*c4762a1bSJed Brown     ierr = PetscFECopyQuadrature(fe, feAux);CHKERRQ(ierr);
786*c4762a1bSJed Brown   }
787*c4762a1bSJed Brown   /* Set discretization and boundary conditions for each mesh */
788*c4762a1bSJed Brown   ierr = DMSetField(dm, 0, NULL, (PetscObject) fe);CHKERRQ(ierr);
789*c4762a1bSJed Brown   ierr = DMCreateDS(dm);CHKERRQ(ierr);
790*c4762a1bSJed Brown   ierr = SetupProblem(dm, user);CHKERRQ(ierr);
791*c4762a1bSJed Brown   while (cdm) {
792*c4762a1bSJed Brown     ierr = DMCopyDisc(dm, cdm);CHKERRQ(ierr);
793*c4762a1bSJed Brown     ierr = SetupAuxDM(cdm, feAux, user);CHKERRQ(ierr);
794*c4762a1bSJed Brown     if (user->bcType == DIRICHLET && user->interpolate) {
795*c4762a1bSJed Brown       PetscBool hasLabel;
796*c4762a1bSJed Brown 
797*c4762a1bSJed Brown       ierr = DMHasLabel(cdm, "marker", &hasLabel);CHKERRQ(ierr);
798*c4762a1bSJed Brown       if (!hasLabel) {ierr = CreateBCLabel(cdm, "marker");CHKERRQ(ierr);}
799*c4762a1bSJed Brown     }
800*c4762a1bSJed Brown     ierr = DMGetCoarseDM(cdm, &cdm);CHKERRQ(ierr);
801*c4762a1bSJed Brown   }
802*c4762a1bSJed Brown   ierr = PetscFEDestroy(&fe);CHKERRQ(ierr);
803*c4762a1bSJed Brown   ierr = PetscFEDestroy(&feAux);CHKERRQ(ierr);
804*c4762a1bSJed Brown   PetscFunctionReturn(0);
805*c4762a1bSJed Brown }
806*c4762a1bSJed Brown 
807*c4762a1bSJed Brown #include "petsc/private/petscimpl.h"
808*c4762a1bSJed Brown 
809*c4762a1bSJed Brown /*@C
810*c4762a1bSJed Brown   KSPMonitorError - Outputs the error at each iteration of an iterative solver.
811*c4762a1bSJed Brown 
812*c4762a1bSJed Brown   Collective on KSP
813*c4762a1bSJed Brown 
814*c4762a1bSJed Brown   Input Parameters:
815*c4762a1bSJed Brown + ksp   - the KSP
816*c4762a1bSJed Brown . its   - iteration number
817*c4762a1bSJed Brown . rnorm - 2-norm, preconditioned residual value (may be estimated).
818*c4762a1bSJed Brown - ctx   - monitor context
819*c4762a1bSJed Brown 
820*c4762a1bSJed Brown   Level: intermediate
821*c4762a1bSJed Brown 
822*c4762a1bSJed Brown .seealso: KSPMonitorSet(), KSPMonitorTrueResidualNorm(), KSPMonitorDefault()
823*c4762a1bSJed Brown @*/
824*c4762a1bSJed Brown static PetscErrorCode KSPMonitorError(KSP ksp, PetscInt its, PetscReal rnorm, void *ctx)
825*c4762a1bSJed Brown {
826*c4762a1bSJed Brown   AppCtx        *user = (AppCtx *) ctx;
827*c4762a1bSJed Brown   DM             dm;
828*c4762a1bSJed Brown   Vec            du = NULL, r;
829*c4762a1bSJed Brown   PetscInt       level = 0;
830*c4762a1bSJed Brown   PetscBool      hasLevel;
831*c4762a1bSJed Brown #if defined(PETSC_HAVE_HDF5)
832*c4762a1bSJed Brown   PetscViewer    viewer;
833*c4762a1bSJed Brown   char           buf[256];
834*c4762a1bSJed Brown #endif
835*c4762a1bSJed Brown   PetscErrorCode ierr;
836*c4762a1bSJed Brown 
837*c4762a1bSJed Brown   PetscFunctionBegin;
838*c4762a1bSJed Brown   ierr = KSPGetDM(ksp, &dm);CHKERRQ(ierr);
839*c4762a1bSJed Brown   /* Calculate solution */
840*c4762a1bSJed Brown   {
841*c4762a1bSJed Brown     PC        pc = user->pcmg; /* The MG PC */
842*c4762a1bSJed Brown     DM        fdm = NULL,  cdm = NULL;
843*c4762a1bSJed Brown     KSP       fksp, cksp;
844*c4762a1bSJed Brown     Vec       fu,   cu = NULL;
845*c4762a1bSJed Brown     PetscInt  levels, l;
846*c4762a1bSJed Brown 
847*c4762a1bSJed Brown     ierr = KSPBuildSolution(ksp, NULL, &du);CHKERRQ(ierr);
848*c4762a1bSJed Brown     ierr = PetscObjectComposedDataGetInt((PetscObject) ksp, PetscMGLevelId, level, hasLevel);CHKERRQ(ierr);
849*c4762a1bSJed Brown     ierr = PCMGGetLevels(pc, &levels);CHKERRQ(ierr);
850*c4762a1bSJed Brown     ierr = PCMGGetSmoother(pc, levels-1, &fksp);CHKERRQ(ierr);
851*c4762a1bSJed Brown     ierr = KSPBuildSolution(fksp, NULL, &fu);CHKERRQ(ierr);
852*c4762a1bSJed Brown     for (l = levels-1; l > level; --l) {
853*c4762a1bSJed Brown       Mat R;
854*c4762a1bSJed Brown       Vec s;
855*c4762a1bSJed Brown 
856*c4762a1bSJed Brown       ierr = PCMGGetSmoother(pc, l-1, &cksp);CHKERRQ(ierr);
857*c4762a1bSJed Brown       ierr = KSPGetDM(cksp, &cdm);CHKERRQ(ierr);
858*c4762a1bSJed Brown       ierr = DMGetGlobalVector(cdm, &cu);CHKERRQ(ierr);
859*c4762a1bSJed Brown       ierr = PCMGGetRestriction(pc, l, &R);CHKERRQ(ierr);
860*c4762a1bSJed Brown       ierr = PCMGGetRScale(pc, l, &s);CHKERRQ(ierr);
861*c4762a1bSJed Brown       ierr = MatRestrict(R, fu, cu);CHKERRQ(ierr);
862*c4762a1bSJed Brown       ierr = VecPointwiseMult(cu, cu, s);CHKERRQ(ierr);
863*c4762a1bSJed Brown       if (l < levels-1) {ierr = DMRestoreGlobalVector(fdm, &fu);CHKERRQ(ierr);}
864*c4762a1bSJed Brown       fdm  = cdm;
865*c4762a1bSJed Brown       fu   = cu;
866*c4762a1bSJed Brown     }
867*c4762a1bSJed Brown     if (levels-1 > level) {
868*c4762a1bSJed Brown       ierr = VecAXPY(du, 1.0, cu);CHKERRQ(ierr);
869*c4762a1bSJed Brown       ierr = DMRestoreGlobalVector(cdm, &cu);CHKERRQ(ierr);
870*c4762a1bSJed Brown     }
871*c4762a1bSJed Brown   }
872*c4762a1bSJed Brown   /* Calculate error */
873*c4762a1bSJed Brown   ierr = DMGetGlobalVector(dm, &r);CHKERRQ(ierr);
874*c4762a1bSJed Brown   ierr = DMProjectFunction(dm, 0.0, user->exactFuncs, NULL, INSERT_ALL_VALUES, r);CHKERRQ(ierr);
875*c4762a1bSJed Brown   ierr = VecAXPY(r,-1.0,du);CHKERRQ(ierr);
876*c4762a1bSJed Brown   ierr = PetscObjectSetName((PetscObject) r, "solution error");CHKERRQ(ierr);
877*c4762a1bSJed Brown   /* View error */
878*c4762a1bSJed Brown #if defined(PETSC_HAVE_HDF5)
879*c4762a1bSJed Brown   ierr = PetscSNPrintf(buf, 256, "ex12-%D.h5", level);CHKERRQ(ierr);
880*c4762a1bSJed Brown   ierr = PetscViewerHDF5Open(PETSC_COMM_WORLD, buf, FILE_MODE_APPEND, &viewer);CHKERRQ(ierr);
881*c4762a1bSJed Brown   ierr = VecView(r, viewer);CHKERRQ(ierr);
882*c4762a1bSJed Brown   ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr);
883*c4762a1bSJed Brown #endif
884*c4762a1bSJed Brown   ierr = DMRestoreGlobalVector(dm, &r);CHKERRQ(ierr);
885*c4762a1bSJed Brown   PetscFunctionReturn(0);
886*c4762a1bSJed Brown }
887*c4762a1bSJed Brown 
888*c4762a1bSJed Brown /*@C
889*c4762a1bSJed Brown   SNESMonitorError - Outputs the error at each iteration of an iterative solver.
890*c4762a1bSJed Brown 
891*c4762a1bSJed Brown   Collective on SNES
892*c4762a1bSJed Brown 
893*c4762a1bSJed Brown   Input Parameters:
894*c4762a1bSJed Brown + snes  - the SNES
895*c4762a1bSJed Brown . its   - iteration number
896*c4762a1bSJed Brown . rnorm - 2-norm of residual
897*c4762a1bSJed Brown - ctx   - user context
898*c4762a1bSJed Brown 
899*c4762a1bSJed Brown   Level: intermediate
900*c4762a1bSJed Brown 
901*c4762a1bSJed Brown .seealso: SNESMonitorDefault(), SNESMonitorSet(), SNESMonitorSolution()
902*c4762a1bSJed Brown @*/
903*c4762a1bSJed Brown static PetscErrorCode SNESMonitorError(SNES snes, PetscInt its, PetscReal rnorm, void *ctx)
904*c4762a1bSJed Brown {
905*c4762a1bSJed Brown   AppCtx        *user = (AppCtx *) ctx;
906*c4762a1bSJed Brown   DM             dm;
907*c4762a1bSJed Brown   Vec            u, r;
908*c4762a1bSJed Brown   PetscInt       level = -1;
909*c4762a1bSJed Brown   PetscBool      hasLevel;
910*c4762a1bSJed Brown #if defined(PETSC_HAVE_HDF5)
911*c4762a1bSJed Brown   PetscViewer    viewer;
912*c4762a1bSJed Brown #endif
913*c4762a1bSJed Brown   char           buf[256];
914*c4762a1bSJed Brown   PetscErrorCode ierr;
915*c4762a1bSJed Brown 
916*c4762a1bSJed Brown   PetscFunctionBegin;
917*c4762a1bSJed Brown   ierr = SNESGetDM(snes, &dm);CHKERRQ(ierr);
918*c4762a1bSJed Brown   /* Calculate error */
919*c4762a1bSJed Brown   ierr = SNESGetSolution(snes, &u);CHKERRQ(ierr);
920*c4762a1bSJed Brown   ierr = DMGetGlobalVector(dm, &r);CHKERRQ(ierr);
921*c4762a1bSJed Brown   ierr = PetscObjectSetName((PetscObject) r, "solution error");CHKERRQ(ierr);
922*c4762a1bSJed Brown   ierr = DMProjectFunction(dm, 0.0, user->exactFuncs, NULL, INSERT_ALL_VALUES, r);CHKERRQ(ierr);
923*c4762a1bSJed Brown   ierr = VecAXPY(r, -1.0, u);CHKERRQ(ierr);
924*c4762a1bSJed Brown   /* View error */
925*c4762a1bSJed Brown   ierr = PetscObjectComposedDataGetInt((PetscObject) snes, PetscMGLevelId, level, hasLevel);CHKERRQ(ierr);
926*c4762a1bSJed Brown   ierr = PetscSNPrintf(buf, 256, "ex12-%D.h5", level);CHKERRQ(ierr);
927*c4762a1bSJed Brown #if defined(PETSC_HAVE_HDF5)
928*c4762a1bSJed Brown   ierr = PetscViewerHDF5Open(PETSC_COMM_WORLD, buf, FILE_MODE_APPEND, &viewer);CHKERRQ(ierr);
929*c4762a1bSJed Brown   ierr = VecView(r, viewer);CHKERRQ(ierr);
930*c4762a1bSJed Brown   ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr);
931*c4762a1bSJed Brown   /* Cleanup */
932*c4762a1bSJed Brown   ierr = DMRestoreGlobalVector(dm, &r);CHKERRQ(ierr);
933*c4762a1bSJed Brown   PetscFunctionReturn(0);
934*c4762a1bSJed Brown #else
935*c4762a1bSJed Brown   SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_SUP,"You need to configure with --download-hdf5");
936*c4762a1bSJed Brown #endif
937*c4762a1bSJed Brown }
938*c4762a1bSJed Brown 
939*c4762a1bSJed Brown int main(int argc, char **argv)
940*c4762a1bSJed Brown {
941*c4762a1bSJed Brown   DM             dm;          /* Problem specification */
942*c4762a1bSJed Brown   SNES           snes;        /* nonlinear solver */
943*c4762a1bSJed Brown   Vec            u;           /* solution vector */
944*c4762a1bSJed Brown   Mat            A,J;         /* Jacobian matrix */
945*c4762a1bSJed Brown   MatNullSpace   nullSpace;   /* May be necessary for Neumann conditions */
946*c4762a1bSJed Brown   AppCtx         user;        /* user-defined work context */
947*c4762a1bSJed Brown   JacActionCtx   userJ;       /* context for Jacobian MF action */
948*c4762a1bSJed Brown   PetscReal      error = 0.0; /* L_2 error in the solution */
949*c4762a1bSJed Brown   PetscBool      isFAS;
950*c4762a1bSJed Brown   PetscErrorCode ierr;
951*c4762a1bSJed Brown 
952*c4762a1bSJed Brown   ierr = PetscInitialize(&argc, &argv, NULL,help);if (ierr) return ierr;
953*c4762a1bSJed Brown   ierr = ProcessOptions(PETSC_COMM_WORLD, &user);CHKERRQ(ierr);
954*c4762a1bSJed Brown   ierr = SNESCreate(PETSC_COMM_WORLD, &snes);CHKERRQ(ierr);
955*c4762a1bSJed Brown   ierr = CreateMesh(PETSC_COMM_WORLD, &user, &dm);CHKERRQ(ierr);
956*c4762a1bSJed Brown   ierr = SNESSetDM(snes, dm);CHKERRQ(ierr);
957*c4762a1bSJed Brown   ierr = DMSetApplicationContext(dm, &user);CHKERRQ(ierr);
958*c4762a1bSJed Brown 
959*c4762a1bSJed Brown   ierr = PetscMalloc2(1, &user.exactFuncs, 1, &user.exactFields);CHKERRQ(ierr);
960*c4762a1bSJed Brown   ierr = SetupDiscretization(dm, &user);CHKERRQ(ierr);
961*c4762a1bSJed Brown 
962*c4762a1bSJed Brown   ierr = DMCreateGlobalVector(dm, &u);CHKERRQ(ierr);
963*c4762a1bSJed Brown   ierr = PetscObjectSetName((PetscObject) u, "potential");CHKERRQ(ierr);
964*c4762a1bSJed Brown 
965*c4762a1bSJed Brown   ierr = DMCreateMatrix(dm, &J);CHKERRQ(ierr);
966*c4762a1bSJed Brown   if (user.jacobianMF) {
967*c4762a1bSJed Brown     PetscInt M, m, N, n;
968*c4762a1bSJed Brown 
969*c4762a1bSJed Brown     ierr = MatGetSize(J, &M, &N);CHKERRQ(ierr);
970*c4762a1bSJed Brown     ierr = MatGetLocalSize(J, &m, &n);CHKERRQ(ierr);
971*c4762a1bSJed Brown     ierr = MatCreate(PETSC_COMM_WORLD, &A);CHKERRQ(ierr);
972*c4762a1bSJed Brown     ierr = MatSetSizes(A, m, n, M, N);CHKERRQ(ierr);
973*c4762a1bSJed Brown     ierr = MatSetType(A, MATSHELL);CHKERRQ(ierr);
974*c4762a1bSJed Brown     ierr = MatSetUp(A);CHKERRQ(ierr);
975*c4762a1bSJed Brown #if 0
976*c4762a1bSJed Brown     ierr = MatShellSetOperation(A, MATOP_MULT, (void (*)(void))FormJacobianAction);CHKERRQ(ierr);
977*c4762a1bSJed Brown #endif
978*c4762a1bSJed Brown 
979*c4762a1bSJed Brown     userJ.dm   = dm;
980*c4762a1bSJed Brown     userJ.J    = J;
981*c4762a1bSJed Brown     userJ.user = &user;
982*c4762a1bSJed Brown 
983*c4762a1bSJed Brown     ierr = DMCreateLocalVector(dm, &userJ.u);CHKERRQ(ierr);
984*c4762a1bSJed Brown     if (user.fieldBC) {ierr = DMProjectFieldLocal(dm, 0.0, userJ.u, user.exactFields, INSERT_BC_VALUES, userJ.u);CHKERRQ(ierr);}
985*c4762a1bSJed Brown     else              {ierr = DMProjectFunctionLocal(dm, 0.0, user.exactFuncs, NULL, INSERT_BC_VALUES, userJ.u);CHKERRQ(ierr);}
986*c4762a1bSJed Brown     ierr = MatShellSetContext(A, &userJ);CHKERRQ(ierr);
987*c4762a1bSJed Brown   } else {
988*c4762a1bSJed Brown     A = J;
989*c4762a1bSJed Brown   }
990*c4762a1bSJed Brown 
991*c4762a1bSJed Brown   nullSpace = NULL;
992*c4762a1bSJed Brown   if (user.bcType != DIRICHLET) {
993*c4762a1bSJed Brown     ierr = MatNullSpaceCreate(PetscObjectComm((PetscObject) dm), PETSC_TRUE, 0, NULL, &nullSpace);CHKERRQ(ierr);
994*c4762a1bSJed Brown     ierr = MatSetNullSpace(A, nullSpace);CHKERRQ(ierr);
995*c4762a1bSJed Brown   }
996*c4762a1bSJed Brown 
997*c4762a1bSJed Brown   ierr = DMPlexSetSNESLocalFEM(dm,&user,&user,&user);CHKERRQ(ierr);
998*c4762a1bSJed Brown   ierr = SNESSetJacobian(snes, A, J, NULL, NULL);CHKERRQ(ierr);
999*c4762a1bSJed Brown 
1000*c4762a1bSJed Brown   ierr = SNESSetFromOptions(snes);CHKERRQ(ierr);
1001*c4762a1bSJed Brown 
1002*c4762a1bSJed Brown   if (user.fieldBC) {ierr = DMProjectField(dm, 0.0, u, user.exactFields, INSERT_ALL_VALUES, u);CHKERRQ(ierr);}
1003*c4762a1bSJed Brown   else              {ierr = DMProjectFunction(dm, 0.0, user.exactFuncs, NULL, INSERT_ALL_VALUES, u);CHKERRQ(ierr);}
1004*c4762a1bSJed Brown   if (user.restart) {
1005*c4762a1bSJed Brown #if defined(PETSC_HAVE_HDF5)
1006*c4762a1bSJed Brown     PetscViewer viewer;
1007*c4762a1bSJed Brown 
1008*c4762a1bSJed Brown     ierr = PetscViewerCreate(PETSC_COMM_WORLD, &viewer);CHKERRQ(ierr);
1009*c4762a1bSJed Brown     ierr = PetscViewerSetType(viewer, PETSCVIEWERHDF5);CHKERRQ(ierr);
1010*c4762a1bSJed Brown     ierr = PetscViewerFileSetMode(viewer, FILE_MODE_READ);CHKERRQ(ierr);
1011*c4762a1bSJed Brown     ierr = PetscViewerFileSetName(viewer, user.filename);CHKERRQ(ierr);
1012*c4762a1bSJed Brown     ierr = PetscViewerHDF5PushGroup(viewer, "/fields");CHKERRQ(ierr);
1013*c4762a1bSJed Brown     ierr = VecLoad(u, viewer);CHKERRQ(ierr);
1014*c4762a1bSJed Brown     ierr = PetscViewerHDF5PopGroup(viewer);CHKERRQ(ierr);
1015*c4762a1bSJed Brown     ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr);
1016*c4762a1bSJed Brown #endif
1017*c4762a1bSJed Brown   }
1018*c4762a1bSJed Brown   if (user.showInitial) {
1019*c4762a1bSJed Brown     Vec lv;
1020*c4762a1bSJed Brown     ierr = DMGetLocalVector(dm, &lv);CHKERRQ(ierr);
1021*c4762a1bSJed Brown     ierr = DMGlobalToLocalBegin(dm, u, INSERT_VALUES, lv);CHKERRQ(ierr);
1022*c4762a1bSJed Brown     ierr = DMGlobalToLocalEnd(dm, u, INSERT_VALUES, lv);CHKERRQ(ierr);
1023*c4762a1bSJed Brown     ierr = DMPrintLocalVec(dm, "Local function", 1.0e-10, lv);CHKERRQ(ierr);
1024*c4762a1bSJed Brown     ierr = DMRestoreLocalVector(dm, &lv);CHKERRQ(ierr);
1025*c4762a1bSJed Brown   }
1026*c4762a1bSJed Brown   if (user.viewHierarchy) {
1027*c4762a1bSJed Brown     SNES      lsnes;
1028*c4762a1bSJed Brown     KSP       ksp;
1029*c4762a1bSJed Brown     PC        pc;
1030*c4762a1bSJed Brown     PetscInt  numLevels, l;
1031*c4762a1bSJed Brown     PetscBool isMG;
1032*c4762a1bSJed Brown 
1033*c4762a1bSJed Brown     ierr = PetscObjectTypeCompare((PetscObject) snes, SNESFAS, &isFAS);CHKERRQ(ierr);
1034*c4762a1bSJed Brown     if (isFAS) {
1035*c4762a1bSJed Brown       ierr = SNESFASGetLevels(snes, &numLevels);CHKERRQ(ierr);
1036*c4762a1bSJed Brown       for (l = 0; l < numLevels; ++l) {
1037*c4762a1bSJed Brown         ierr = SNESFASGetCycleSNES(snes, l, &lsnes);CHKERRQ(ierr);
1038*c4762a1bSJed Brown         ierr = SNESMonitorSet(lsnes, SNESMonitorError, &user, NULL);CHKERRQ(ierr);
1039*c4762a1bSJed Brown       }
1040*c4762a1bSJed Brown     } else {
1041*c4762a1bSJed Brown       ierr = SNESGetKSP(snes, &ksp);CHKERRQ(ierr);
1042*c4762a1bSJed Brown       ierr = KSPGetPC(ksp, &pc);CHKERRQ(ierr);
1043*c4762a1bSJed Brown       ierr = PetscObjectTypeCompare((PetscObject) pc, PCMG, &isMG);CHKERRQ(ierr);
1044*c4762a1bSJed Brown       if (isMG) {
1045*c4762a1bSJed Brown         user.pcmg = pc;
1046*c4762a1bSJed Brown         ierr = PCMGGetLevels(pc, &numLevels);CHKERRQ(ierr);
1047*c4762a1bSJed Brown         for (l = 0; l < numLevels; ++l) {
1048*c4762a1bSJed Brown           ierr = PCMGGetSmootherDown(pc, l, &ksp);CHKERRQ(ierr);
1049*c4762a1bSJed Brown           ierr = KSPMonitorSet(ksp, KSPMonitorError, &user, NULL);CHKERRQ(ierr);
1050*c4762a1bSJed Brown         }
1051*c4762a1bSJed Brown       }
1052*c4762a1bSJed Brown     }
1053*c4762a1bSJed Brown   }
1054*c4762a1bSJed Brown   if (user.runType == RUN_FULL || user.runType == RUN_EXACT) {
1055*c4762a1bSJed Brown     PetscErrorCode (*initialGuess[1])(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar u[], void *ctx) = {zero};
1056*c4762a1bSJed Brown 
1057*c4762a1bSJed Brown     if (user.nonzInit) initialGuess[0] = ecks;
1058*c4762a1bSJed Brown     if (user.runType == RUN_FULL) {
1059*c4762a1bSJed Brown       ierr = DMProjectFunction(dm, 0.0, initialGuess, NULL, INSERT_VALUES, u);CHKERRQ(ierr);
1060*c4762a1bSJed Brown     }
1061*c4762a1bSJed Brown     if (user.debug) {
1062*c4762a1bSJed Brown       ierr = PetscPrintf(PETSC_COMM_WORLD, "Initial guess\n");CHKERRQ(ierr);
1063*c4762a1bSJed Brown       ierr = VecView(u, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);
1064*c4762a1bSJed Brown     }
1065*c4762a1bSJed Brown     ierr = VecViewFromOptions(u, NULL, "-guess_vec_view");CHKERRQ(ierr);
1066*c4762a1bSJed Brown     ierr = SNESSolve(snes, NULL, u);CHKERRQ(ierr);
1067*c4762a1bSJed Brown     ierr = SNESGetSolution(snes, &u);CHKERRQ(ierr);
1068*c4762a1bSJed Brown     ierr = SNESGetDM(snes, &dm);CHKERRQ(ierr);
1069*c4762a1bSJed Brown 
1070*c4762a1bSJed Brown     if (user.showSolution) {
1071*c4762a1bSJed Brown       ierr = PetscPrintf(PETSC_COMM_WORLD, "Solution\n");CHKERRQ(ierr);
1072*c4762a1bSJed Brown       ierr = VecChop(u, 3.0e-9);CHKERRQ(ierr);
1073*c4762a1bSJed Brown       ierr = VecView(u, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);
1074*c4762a1bSJed Brown     }
1075*c4762a1bSJed Brown     ierr = VecViewFromOptions(u, NULL, "-vec_view");CHKERRQ(ierr);
1076*c4762a1bSJed Brown   } else if (user.runType == RUN_PERF) {
1077*c4762a1bSJed Brown     Vec       r;
1078*c4762a1bSJed Brown     PetscReal res = 0.0;
1079*c4762a1bSJed Brown 
1080*c4762a1bSJed Brown     ierr = SNESGetFunction(snes, &r, NULL, NULL);CHKERRQ(ierr);
1081*c4762a1bSJed Brown     ierr = SNESComputeFunction(snes, u, r);CHKERRQ(ierr);
1082*c4762a1bSJed Brown     ierr = PetscPrintf(PETSC_COMM_WORLD, "Initial Residual\n");CHKERRQ(ierr);
1083*c4762a1bSJed Brown     ierr = VecChop(r, 1.0e-10);CHKERRQ(ierr);
1084*c4762a1bSJed Brown     ierr = VecNorm(r, NORM_2, &res);CHKERRQ(ierr);
1085*c4762a1bSJed Brown     ierr = PetscPrintf(PETSC_COMM_WORLD, "L_2 Residual: %g\n", (double)res);CHKERRQ(ierr);
1086*c4762a1bSJed Brown   } else {
1087*c4762a1bSJed Brown     Vec       r;
1088*c4762a1bSJed Brown     PetscReal res = 0.0, tol = 1.0e-11;
1089*c4762a1bSJed Brown 
1090*c4762a1bSJed Brown     /* Check discretization error */
1091*c4762a1bSJed Brown     ierr = SNESGetFunction(snes, &r, NULL, NULL);CHKERRQ(ierr);
1092*c4762a1bSJed Brown     ierr = PetscPrintf(PETSC_COMM_WORLD, "Initial guess\n");CHKERRQ(ierr);
1093*c4762a1bSJed Brown     if (!user.quiet) {ierr = VecView(u, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);}
1094*c4762a1bSJed Brown     ierr = DMComputeL2Diff(dm, 0.0, user.exactFuncs, NULL, u, &error);CHKERRQ(ierr);
1095*c4762a1bSJed Brown     if (error < tol) {ierr = PetscPrintf(PETSC_COMM_WORLD, "L_2 Error: < %2.1e\n", (double)tol);CHKERRQ(ierr);}
1096*c4762a1bSJed Brown     else             {ierr = PetscPrintf(PETSC_COMM_WORLD, "L_2 Error: %g\n", (double)error);CHKERRQ(ierr);}
1097*c4762a1bSJed Brown     /* Check residual */
1098*c4762a1bSJed Brown     ierr = SNESComputeFunction(snes, u, r);CHKERRQ(ierr);
1099*c4762a1bSJed Brown     ierr = PetscPrintf(PETSC_COMM_WORLD, "Initial Residual\n");CHKERRQ(ierr);
1100*c4762a1bSJed Brown     ierr = VecChop(r, 1.0e-10);CHKERRQ(ierr);
1101*c4762a1bSJed Brown     if (!user.quiet) {ierr = VecView(r, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);}
1102*c4762a1bSJed Brown     ierr = VecNorm(r, NORM_2, &res);CHKERRQ(ierr);
1103*c4762a1bSJed Brown     ierr = PetscPrintf(PETSC_COMM_WORLD, "L_2 Residual: %g\n", (double)res);CHKERRQ(ierr);
1104*c4762a1bSJed Brown     /* Check Jacobian */
1105*c4762a1bSJed Brown     {
1106*c4762a1bSJed Brown       Vec b;
1107*c4762a1bSJed Brown 
1108*c4762a1bSJed Brown       ierr = SNESComputeJacobian(snes, u, A, A);CHKERRQ(ierr);
1109*c4762a1bSJed Brown       ierr = VecDuplicate(u, &b);CHKERRQ(ierr);
1110*c4762a1bSJed Brown       ierr = VecSet(r, 0.0);CHKERRQ(ierr);
1111*c4762a1bSJed Brown       ierr = SNESComputeFunction(snes, r, b);CHKERRQ(ierr);
1112*c4762a1bSJed Brown       ierr = MatMult(A, u, r);CHKERRQ(ierr);
1113*c4762a1bSJed Brown       ierr = VecAXPY(r, 1.0, b);CHKERRQ(ierr);
1114*c4762a1bSJed Brown       ierr = PetscPrintf(PETSC_COMM_WORLD, "Au - b = Au + F(0)\n");CHKERRQ(ierr);
1115*c4762a1bSJed Brown       ierr = VecChop(r, 1.0e-10);CHKERRQ(ierr);
1116*c4762a1bSJed Brown       if (!user.quiet) {ierr = VecView(r, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);}
1117*c4762a1bSJed Brown       ierr = VecNorm(r, NORM_2, &res);CHKERRQ(ierr);
1118*c4762a1bSJed Brown       ierr = PetscPrintf(PETSC_COMM_WORLD, "Linear L_2 Residual: %g\n", (double)res);CHKERRQ(ierr);
1119*c4762a1bSJed Brown       /* check solver */
1120*c4762a1bSJed Brown       if (user.checkksp) {
1121*c4762a1bSJed Brown         KSP ksp;
1122*c4762a1bSJed Brown 
1123*c4762a1bSJed Brown         if (nullSpace) {
1124*c4762a1bSJed Brown           ierr = MatNullSpaceRemove(nullSpace, u);CHKERRQ(ierr);
1125*c4762a1bSJed Brown         }
1126*c4762a1bSJed Brown         ierr = SNESComputeJacobian(snes, u, A, J);CHKERRQ(ierr);
1127*c4762a1bSJed Brown         ierr = MatMult(A, u, b);CHKERRQ(ierr);
1128*c4762a1bSJed Brown         ierr = SNESGetKSP(snes, &ksp);CHKERRQ(ierr);
1129*c4762a1bSJed Brown         ierr = KSPSetOperators(ksp, A, J);CHKERRQ(ierr);
1130*c4762a1bSJed Brown         ierr = KSPSolve(ksp, b, r);CHKERRQ(ierr);
1131*c4762a1bSJed Brown         ierr = VecAXPY(r, -1.0, u);CHKERRQ(ierr);
1132*c4762a1bSJed Brown         ierr = VecNorm(r, NORM_2, &res);CHKERRQ(ierr);
1133*c4762a1bSJed Brown         ierr = PetscPrintf(PETSC_COMM_WORLD, "KSP Error: %g\n", (double)res);CHKERRQ(ierr);
1134*c4762a1bSJed Brown       }
1135*c4762a1bSJed Brown       ierr = VecDestroy(&b);CHKERRQ(ierr);
1136*c4762a1bSJed Brown     }
1137*c4762a1bSJed Brown   }
1138*c4762a1bSJed Brown   ierr = VecViewFromOptions(u, NULL, "-vec_view");CHKERRQ(ierr);
1139*c4762a1bSJed Brown 
1140*c4762a1bSJed Brown   if (user.bdIntegral) {
1141*c4762a1bSJed Brown     DMLabel   label;
1142*c4762a1bSJed Brown     PetscInt  id = 1;
1143*c4762a1bSJed Brown     PetscScalar bdInt = 0.0;
1144*c4762a1bSJed Brown     PetscReal   exact = 3.3333333333;
1145*c4762a1bSJed Brown 
1146*c4762a1bSJed Brown     ierr = DMGetLabel(dm, "marker", &label);CHKERRQ(ierr);
1147*c4762a1bSJed Brown     ierr = DMPlexComputeBdIntegral(dm, u, label, 1, &id, bd_integral_2d, &bdInt, NULL);CHKERRQ(ierr);
1148*c4762a1bSJed Brown     ierr = PetscPrintf(PETSC_COMM_WORLD, "Solution boundary integral: %.4g\n", (double) PetscAbsScalar(bdInt));CHKERRQ(ierr);
1149*c4762a1bSJed Brown     if (PetscAbsReal(PetscAbsScalar(bdInt) - exact) > PETSC_SQRT_MACHINE_EPSILON) SETERRQ2(PETSC_COMM_WORLD, PETSC_ERR_PLIB, "Invalid boundary integral %g != %g", (double) PetscAbsScalar(bdInt), (double)exact);
1150*c4762a1bSJed Brown   }
1151*c4762a1bSJed Brown 
1152*c4762a1bSJed Brown   ierr = MatNullSpaceDestroy(&nullSpace);CHKERRQ(ierr);
1153*c4762a1bSJed Brown   if (user.jacobianMF) {ierr = VecDestroy(&userJ.u);CHKERRQ(ierr);}
1154*c4762a1bSJed Brown   if (A != J) {ierr = MatDestroy(&A);CHKERRQ(ierr);}
1155*c4762a1bSJed Brown   ierr = MatDestroy(&J);CHKERRQ(ierr);
1156*c4762a1bSJed Brown   ierr = VecDestroy(&u);CHKERRQ(ierr);
1157*c4762a1bSJed Brown   ierr = SNESDestroy(&snes);CHKERRQ(ierr);
1158*c4762a1bSJed Brown   ierr = DMDestroy(&dm);CHKERRQ(ierr);
1159*c4762a1bSJed Brown   ierr = PetscFree2(user.exactFuncs, user.exactFields);CHKERRQ(ierr);
1160*c4762a1bSJed Brown   ierr = PetscFinalize();
1161*c4762a1bSJed Brown   return ierr;
1162*c4762a1bSJed Brown }
1163*c4762a1bSJed Brown 
1164*c4762a1bSJed Brown /*TEST
1165*c4762a1bSJed Brown   # 2D serial P1 test 0-4
1166*c4762a1bSJed Brown   test:
1167*c4762a1bSJed Brown     suffix: 2d_p1_0
1168*c4762a1bSJed Brown     requires: triangle
1169*c4762a1bSJed Brown     args: -run_type test -refinement_limit 0.0    -bc_type dirichlet -interpolate 0 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1
1170*c4762a1bSJed Brown 
1171*c4762a1bSJed Brown   test:
1172*c4762a1bSJed Brown     suffix: 2d_p1_1
1173*c4762a1bSJed Brown     requires: triangle
1174*c4762a1bSJed Brown     args: -run_type test -refinement_limit 0.0    -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1
1175*c4762a1bSJed Brown 
1176*c4762a1bSJed Brown   test:
1177*c4762a1bSJed Brown     suffix: 2d_p1_2
1178*c4762a1bSJed Brown     requires: triangle
1179*c4762a1bSJed Brown     args: -run_type test -refinement_limit 0.0625 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1
1180*c4762a1bSJed Brown 
1181*c4762a1bSJed Brown   test:
1182*c4762a1bSJed Brown     suffix: 2d_p1_neumann_0
1183*c4762a1bSJed Brown     requires: triangle
1184*c4762a1bSJed Brown     args: -run_type test -refinement_limit 0.0    -bc_type neumann   -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1 -dm_view ascii::ascii_info_detail
1185*c4762a1bSJed Brown 
1186*c4762a1bSJed Brown   test:
1187*c4762a1bSJed Brown     suffix: 2d_p1_neumann_1
1188*c4762a1bSJed Brown     requires: triangle
1189*c4762a1bSJed Brown     args: -run_type test -refinement_limit 0.0625 -bc_type neumann   -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1
1190*c4762a1bSJed Brown 
1191*c4762a1bSJed Brown   # 2D serial P2 test 5-8
1192*c4762a1bSJed Brown   test:
1193*c4762a1bSJed Brown     suffix: 2d_p2_0
1194*c4762a1bSJed Brown     requires: triangle
1195*c4762a1bSJed Brown     args: -run_type test -refinement_limit 0.0    -bc_type dirichlet -interpolate 1 -petscspace_degree 2 -show_initial -dm_plex_print_fem 1
1196*c4762a1bSJed Brown 
1197*c4762a1bSJed Brown   test:
1198*c4762a1bSJed Brown     suffix: 2d_p2_1
1199*c4762a1bSJed Brown     requires: triangle
1200*c4762a1bSJed Brown     args: -run_type test -refinement_limit 0.0625 -bc_type dirichlet -interpolate 1 -petscspace_degree 2 -show_initial -dm_plex_print_fem 1
1201*c4762a1bSJed Brown 
1202*c4762a1bSJed Brown   test:
1203*c4762a1bSJed Brown     suffix: 2d_p2_neumann_0
1204*c4762a1bSJed Brown     requires: triangle
1205*c4762a1bSJed Brown     args: -run_type test -refinement_limit 0.0    -bc_type neumann   -interpolate 1 -petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -dm_view ascii::ascii_info_detail
1206*c4762a1bSJed Brown 
1207*c4762a1bSJed Brown   test:
1208*c4762a1bSJed Brown     suffix: 2d_p2_neumann_1
1209*c4762a1bSJed Brown     requires: triangle
1210*c4762a1bSJed Brown     args: -run_type test -refinement_limit 0.0625 -bc_type neumann   -interpolate 1 -petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -dm_view ascii::ascii_info_detail
1211*c4762a1bSJed Brown 
1212*c4762a1bSJed Brown   test:
1213*c4762a1bSJed Brown     suffix: bd_int_0
1214*c4762a1bSJed Brown     requires: triangle
1215*c4762a1bSJed Brown     args: -run_type test -bc_type dirichlet -interpolate 1 -petscspace_degree 2 -bd_integral -dm_view -quiet
1216*c4762a1bSJed Brown 
1217*c4762a1bSJed Brown   test:
1218*c4762a1bSJed Brown     suffix: bd_int_1
1219*c4762a1bSJed Brown     requires: triangle
1220*c4762a1bSJed Brown     args: -run_type test -dm_refine 2 -bc_type dirichlet -interpolate 1 -petscspace_degree 2 -bd_integral -dm_view -quiet
1221*c4762a1bSJed Brown 
1222*c4762a1bSJed Brown   # 3D serial P1 test 9-12
1223*c4762a1bSJed Brown   test:
1224*c4762a1bSJed Brown     suffix: 3d_p1_0
1225*c4762a1bSJed Brown     requires: ctetgen
1226*c4762a1bSJed Brown     args: -run_type test -dim 3 -refinement_limit 0.0    -bc_type dirichlet -interpolate 0 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1 -dm_view -cells 1,1,1
1227*c4762a1bSJed Brown 
1228*c4762a1bSJed Brown   test:
1229*c4762a1bSJed Brown     suffix: 3d_p1_1
1230*c4762a1bSJed Brown     requires: ctetgen
1231*c4762a1bSJed Brown     args: -run_type test -dim 3 -refinement_limit 0.0    -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1 -dm_view -cells 1,1,1
1232*c4762a1bSJed Brown 
1233*c4762a1bSJed Brown   test:
1234*c4762a1bSJed Brown     suffix: 3d_p1_2
1235*c4762a1bSJed Brown     requires: ctetgen
1236*c4762a1bSJed Brown     args: -run_type test -dim 3 -refinement_limit 0.0125 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1 -dm_view -cells 1,1,1
1237*c4762a1bSJed Brown 
1238*c4762a1bSJed Brown   test:
1239*c4762a1bSJed Brown     suffix: 3d_p1_neumann_0
1240*c4762a1bSJed Brown     requires: ctetgen
1241*c4762a1bSJed Brown     args: -run_type test -dim 3 -bc_type neumann   -interpolate 1 -petscspace_degree 1 -snes_fd -show_initial -dm_plex_print_fem 1 -dm_view -cells 1,1,1
1242*c4762a1bSJed Brown 
1243*c4762a1bSJed Brown   # Analytic variable coefficient 13-20
1244*c4762a1bSJed Brown   test:
1245*c4762a1bSJed Brown     suffix: 13
1246*c4762a1bSJed Brown     requires: triangle
1247*c4762a1bSJed Brown     args: -run_type test -refinement_limit 0.0    -variable_coefficient analytic -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1
1248*c4762a1bSJed Brown   test:
1249*c4762a1bSJed Brown     suffix: 14
1250*c4762a1bSJed Brown     requires: triangle
1251*c4762a1bSJed Brown     args: -run_type test -refinement_limit 0.0625 -variable_coefficient analytic -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1
1252*c4762a1bSJed Brown   test:
1253*c4762a1bSJed Brown     suffix: 15
1254*c4762a1bSJed Brown     requires: triangle
1255*c4762a1bSJed Brown     args: -run_type test -refinement_limit 0.0    -variable_coefficient analytic -interpolate 1 -petscspace_degree 2 -show_initial -dm_plex_print_fem 1
1256*c4762a1bSJed Brown   test:
1257*c4762a1bSJed Brown     suffix: 16
1258*c4762a1bSJed Brown     requires: triangle
1259*c4762a1bSJed Brown     args: -run_type test -refinement_limit 0.0625 -variable_coefficient analytic -interpolate 1 -petscspace_degree 2 -show_initial -dm_plex_print_fem 1
1260*c4762a1bSJed Brown   test:
1261*c4762a1bSJed Brown     suffix: 17
1262*c4762a1bSJed Brown     requires: ctetgen
1263*c4762a1bSJed Brown     args: -run_type test -dim 3 -refinement_limit 0.0    -variable_coefficient analytic -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1 -cells 1,1,1
1264*c4762a1bSJed Brown 
1265*c4762a1bSJed Brown   test:
1266*c4762a1bSJed Brown     suffix: 18
1267*c4762a1bSJed Brown     requires: ctetgen
1268*c4762a1bSJed Brown     args: -run_type test -dim 3 -refinement_limit 0.0125 -variable_coefficient analytic -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1 -cells 1,1,1
1269*c4762a1bSJed Brown 
1270*c4762a1bSJed Brown   test:
1271*c4762a1bSJed Brown     suffix: 19
1272*c4762a1bSJed Brown     requires: ctetgen
1273*c4762a1bSJed Brown     args: -run_type test -dim 3 -refinement_limit 0.0    -variable_coefficient analytic -interpolate 1 -petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -cells 1,1,1
1274*c4762a1bSJed Brown 
1275*c4762a1bSJed Brown   test:
1276*c4762a1bSJed Brown     suffix: 20
1277*c4762a1bSJed Brown     requires: ctetgen
1278*c4762a1bSJed Brown     args: -run_type test -dim 3 -refinement_limit 0.0125 -variable_coefficient analytic -interpolate 1 -petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -cells 1,1,1
1279*c4762a1bSJed Brown 
1280*c4762a1bSJed Brown   # P1 variable coefficient 21-28
1281*c4762a1bSJed Brown   test:
1282*c4762a1bSJed Brown     suffix: 21
1283*c4762a1bSJed Brown     requires: triangle
1284*c4762a1bSJed Brown     args: -run_type test -refinement_limit 0.0    -variable_coefficient field    -interpolate 1 -petscspace_degree 1 -mat_petscspace_degree 1 -show_initial -dm_plex_print_fem 1
1285*c4762a1bSJed Brown 
1286*c4762a1bSJed Brown   test:
1287*c4762a1bSJed Brown     suffix: 22
1288*c4762a1bSJed Brown     requires: triangle
1289*c4762a1bSJed Brown     args: -run_type test -refinement_limit 0.0625 -variable_coefficient field    -interpolate 1 -petscspace_degree 1 -mat_petscspace_degree 1 -show_initial -dm_plex_print_fem 1
1290*c4762a1bSJed Brown 
1291*c4762a1bSJed Brown   test:
1292*c4762a1bSJed Brown     suffix: 23
1293*c4762a1bSJed Brown     requires: triangle
1294*c4762a1bSJed Brown     args: -run_type test -refinement_limit 0.0    -variable_coefficient field    -interpolate 1 -petscspace_degree 2 -mat_petscspace_degree 1 -show_initial -dm_plex_print_fem 1
1295*c4762a1bSJed Brown 
1296*c4762a1bSJed Brown   test:
1297*c4762a1bSJed Brown     suffix: 24
1298*c4762a1bSJed Brown     requires: triangle
1299*c4762a1bSJed Brown     args: -run_type test -refinement_limit 0.0625 -variable_coefficient field    -interpolate 1 -petscspace_degree 2 -mat_petscspace_degree 1 -show_initial -dm_plex_print_fem 1
1300*c4762a1bSJed Brown 
1301*c4762a1bSJed Brown   test:
1302*c4762a1bSJed Brown     suffix: 25
1303*c4762a1bSJed Brown     requires: ctetgen
1304*c4762a1bSJed Brown     args: -run_type test -dim 3 -refinement_limit 0.0    -variable_coefficient field    -interpolate 1 -petscspace_degree 1 -mat_petscspace_degree 1 -show_initial -dm_plex_print_fem 1 -cells 1,1,1
1305*c4762a1bSJed Brown 
1306*c4762a1bSJed Brown   test:
1307*c4762a1bSJed Brown     suffix: 26
1308*c4762a1bSJed Brown     requires: ctetgen
1309*c4762a1bSJed Brown     args: -run_type test -dim 3 -refinement_limit 0.0125 -variable_coefficient field    -interpolate 1 -petscspace_degree 1 -mat_petscspace_degree 1 -show_initial -dm_plex_print_fem 1 -cells 1,1,1
1310*c4762a1bSJed Brown 
1311*c4762a1bSJed Brown   test:
1312*c4762a1bSJed Brown     suffix: 27
1313*c4762a1bSJed Brown     requires: ctetgen
1314*c4762a1bSJed Brown     args: -run_type test -dim 3 -refinement_limit 0.0    -variable_coefficient field    -interpolate 1 -petscspace_degree 2 -mat_petscspace_degree 1 -show_initial -dm_plex_print_fem 1 -cells 1,1,1
1315*c4762a1bSJed Brown 
1316*c4762a1bSJed Brown   test:
1317*c4762a1bSJed Brown     suffix: 28
1318*c4762a1bSJed Brown     requires: ctetgen
1319*c4762a1bSJed Brown     args: -run_type test -dim 3 -refinement_limit 0.0125 -variable_coefficient field    -interpolate 1 -petscspace_degree 2 -mat_petscspace_degree 1 -show_initial -dm_plex_print_fem 1 -cells 1,1,1
1320*c4762a1bSJed Brown 
1321*c4762a1bSJed Brown   # P0 variable coefficient 29-36
1322*c4762a1bSJed Brown   test:
1323*c4762a1bSJed Brown     suffix: 29
1324*c4762a1bSJed Brown     requires: triangle
1325*c4762a1bSJed Brown     args: -run_type test -refinement_limit 0.0    -variable_coefficient field    -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1
1326*c4762a1bSJed Brown 
1327*c4762a1bSJed Brown   test:
1328*c4762a1bSJed Brown     suffix: 30
1329*c4762a1bSJed Brown     requires: triangle
1330*c4762a1bSJed Brown     args: -run_type test -refinement_limit 0.0625 -variable_coefficient field    -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1
1331*c4762a1bSJed Brown 
1332*c4762a1bSJed Brown   test:
1333*c4762a1bSJed Brown     suffix: 31
1334*c4762a1bSJed Brown     requires: triangle
1335*c4762a1bSJed Brown     args: -run_type test -refinement_limit 0.0    -variable_coefficient field    -interpolate 1 -petscspace_degree 2 -show_initial -dm_plex_print_fem 1
1336*c4762a1bSJed Brown 
1337*c4762a1bSJed Brown   test:
1338*c4762a1bSJed Brown     requires: triangle
1339*c4762a1bSJed Brown     suffix: 32
1340*c4762a1bSJed Brown     args: -run_type test -refinement_limit 0.0625 -variable_coefficient field    -interpolate 1 -petscspace_degree 2 -show_initial -dm_plex_print_fem 1
1341*c4762a1bSJed Brown 
1342*c4762a1bSJed Brown   test:
1343*c4762a1bSJed Brown     requires: ctetgen
1344*c4762a1bSJed Brown     suffix: 33
1345*c4762a1bSJed Brown     args: -run_type test -dim 3 -refinement_limit 0.0    -variable_coefficient field    -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1 -cells 1,1,1
1346*c4762a1bSJed Brown 
1347*c4762a1bSJed Brown   test:
1348*c4762a1bSJed Brown     suffix: 34
1349*c4762a1bSJed Brown     requires: ctetgen
1350*c4762a1bSJed Brown     args: -run_type test -dim 3 -refinement_limit 0.0125 -variable_coefficient field    -interpolate 1 -petscspace_degree 1 -show_initial -dm_plex_print_fem 1 -cells 1,1,1
1351*c4762a1bSJed Brown 
1352*c4762a1bSJed Brown   test:
1353*c4762a1bSJed Brown     suffix: 35
1354*c4762a1bSJed Brown     requires: ctetgen
1355*c4762a1bSJed Brown     args: -run_type test -dim 3 -refinement_limit 0.0    -variable_coefficient field    -interpolate 1 -petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -cells 1,1,1
1356*c4762a1bSJed Brown 
1357*c4762a1bSJed Brown   test:
1358*c4762a1bSJed Brown     suffix: 36
1359*c4762a1bSJed Brown     requires: ctetgen
1360*c4762a1bSJed Brown     args: -run_type test -dim 3 -refinement_limit 0.0125 -variable_coefficient field    -interpolate 1 -petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -cells 1,1,1
1361*c4762a1bSJed Brown 
1362*c4762a1bSJed Brown   # Full solve 39-44
1363*c4762a1bSJed Brown   test:
1364*c4762a1bSJed Brown     suffix: 39
1365*c4762a1bSJed Brown     requires: triangle !single
1366*c4762a1bSJed Brown     args: -run_type full -refinement_limit 0.015625 -interpolate 1 -petscspace_degree 2 -pc_type gamg -ksp_rtol 1.0e-10 -ksp_monitor_short -ksp_converged_reason -snes_monitor_short -snes_converged_reason ::ascii_info_detail
1367*c4762a1bSJed Brown   test:
1368*c4762a1bSJed Brown     suffix: 40
1369*c4762a1bSJed Brown     requires: triangle !single
1370*c4762a1bSJed Brown     args: -run_type full -refinement_limit 0.015625 -variable_coefficient nonlinear -interpolate 1 -petscspace_degree 2 -pc_type svd -ksp_rtol 1.0e-10 -snes_monitor_short -snes_converged_reason ::ascii_info_detail
1371*c4762a1bSJed Brown   test:
1372*c4762a1bSJed Brown     suffix: 41
1373*c4762a1bSJed Brown     requires: triangle !single
1374*c4762a1bSJed Brown     args: -run_type full -refinement_limit 0.03125 -variable_coefficient nonlinear -interpolate 1 -petscspace_degree 1 -snes_type fas -snes_fas_levels 2 -fas_coarse_pc_type svd -fas_coarse_ksp_rtol 1.0e-10 -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -dm_refine_hierarchy 1 -snes_view -fas_levels_1_snes_type newtonls -fas_levels_1_pc_type svd -fas_levels_1_ksp_rtol 1.0e-10 -fas_levels_1_snes_monitor_short
1375*c4762a1bSJed Brown   test:
1376*c4762a1bSJed Brown     suffix: 42
1377*c4762a1bSJed Brown     requires: triangle !single
1378*c4762a1bSJed Brown     args: -run_type full -refinement_limit 0.0625 -variable_coefficient nonlinear -interpolate 1 -petscspace_degree 1 -snes_type fas -snes_fas_levels 3 -fas_coarse_pc_type svd -fas_coarse_ksp_rtol 1.0e-10 -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -dm_refine_hierarchy 2 -dm_plex_print_fem 0 -snes_view -fas_levels_1_snes_type newtonls -fas_levels_1_pc_type svd -fas_levels_1_ksp_rtol 1.0e-10 -fas_levels_1_snes_monitor_short -fas_levels_2_snes_type newtonls -fas_levels_2_pc_type svd -fas_levels_2_ksp_rtol 1.0e-10 -fas_levels_2_snes_atol 1.0e-11 -fas_levels_2_snes_monitor_short
1379*c4762a1bSJed Brown   test:
1380*c4762a1bSJed Brown     suffix: 43
1381*c4762a1bSJed Brown     requires: triangle !single
1382*c4762a1bSJed Brown     nsize: 2
1383*c4762a1bSJed Brown     args: -run_type full -refinement_limit 0.03125 -variable_coefficient nonlinear -interpolate 1 -petscspace_degree 1 -snes_type fas -snes_fas_levels 2 -fas_coarse_pc_type svd -fas_coarse_ksp_rtol 1.0e-10 -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -dm_refine_hierarchy 1 -snes_view -fas_levels_1_snes_type newtonls -fas_levels_1_pc_type svd -fas_levels_1_ksp_rtol 1.0e-10 -fas_levels_1_snes_monitor_short
1384*c4762a1bSJed Brown 
1385*c4762a1bSJed Brown   test:
1386*c4762a1bSJed Brown     suffix: 44
1387*c4762a1bSJed Brown     requires: triangle !single
1388*c4762a1bSJed Brown     nsize: 2
1389*c4762a1bSJed Brown     args: -run_type full -refinement_limit 0.0625 -variable_coefficient nonlinear -interpolate 1 -petscspace_degree 1 -snes_type fas -snes_fas_levels 3 -fas_coarse_pc_type svd -fas_coarse_ksp_rtol 1.0e-10 -fas_coarse_snes_monitor_short -snes_monitor_short  -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -dm_refine_hierarchy 2 -dm_plex_print_fem 0 -snes_view -fas_levels_1_snes_type newtonls -fas_levels_1_pc_type svd -fas_levels_1_ksp_rtol 1.0e-10 -fas_levels_1_snes_monitor_short -fas_levels_2_snes_type newtonls -fas_levels_2_pc_type svd -fas_levels_2_ksp_rtol 1.0e-10 -fas_levels_2_snes_atol 1.0e-11 -fas_levels_2_snes_monitor_short
1390*c4762a1bSJed Brown 
1391*c4762a1bSJed Brown   # These tests use a loose tolerance just to exercise the PtAP operations for MATIS and multiple PCBDDC setup calls inside PCMG
1392*c4762a1bSJed Brown   testset:
1393*c4762a1bSJed Brown     requires: triangle !single
1394*c4762a1bSJed Brown     nsize: 3
1395*c4762a1bSJed Brown     args: -interpolate -run_type full -petscspace_degree 1 -dm_mat_type is -pc_type mg -pc_mg_levels 2 -mg_coarse_pc_type bddc -pc_mg_galerkin pmat -ksp_rtol 1.0e-2 -snes_converged_reason -dm_refine_hierarchy 2 -snes_max_it 4
1396*c4762a1bSJed Brown     test:
1397*c4762a1bSJed Brown       suffix: gmg_bddc
1398*c4762a1bSJed Brown       filter: sed -e "s/CONVERGED_FNORM_RELATIVE iterations 3/CONVERGED_FNORM_RELATIVE iterations 4/g"
1399*c4762a1bSJed Brown       args: -mg_levels_pc_type jacobi
1400*c4762a1bSJed Brown     test:
1401*c4762a1bSJed Brown       filter: sed -e "s/iterations [0-4]/iterations 4/g"
1402*c4762a1bSJed Brown       suffix: gmg_bddc_lev
1403*c4762a1bSJed Brown       args: -mg_levels_pc_type bddc
1404*c4762a1bSJed Brown 
1405*c4762a1bSJed Brown   # Restarting
1406*c4762a1bSJed Brown   testset:
1407*c4762a1bSJed Brown     suffix: restart
1408*c4762a1bSJed Brown     requires: hdf5 triangle !complex
1409*c4762a1bSJed Brown     args: -run_type test -refinement_limit 0.0    -bc_type dirichlet -interpolate 1 -petscspace_degree 1
1410*c4762a1bSJed Brown     test:
1411*c4762a1bSJed Brown       args: -dm_view hdf5:sol.h5 -vec_view hdf5:sol.h5::append
1412*c4762a1bSJed Brown     test:
1413*c4762a1bSJed Brown       args: -f sol.h5 -restart
1414*c4762a1bSJed Brown 
1415*c4762a1bSJed Brown   # Periodicity
1416*c4762a1bSJed Brown   test:
1417*c4762a1bSJed Brown     suffix: periodic_0
1418*c4762a1bSJed Brown     requires: triangle
1419*c4762a1bSJed Brown     args: -run_type full -refinement_limit 0.0    -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -snes_converged_reason ::ascii_info_detail
1420*c4762a1bSJed Brown 
1421*c4762a1bSJed Brown   test:
1422*c4762a1bSJed Brown     requires: !complex
1423*c4762a1bSJed Brown     suffix: periodic_1
1424*c4762a1bSJed Brown     args: -quiet -run_type test -simplex 0 -x_periodicity periodic -y_periodicity periodic -vec_view vtk:test.vtu:vtk_vtu -interpolate 1 -petscspace_degree 1 -dm_refine 1
1425*c4762a1bSJed Brown 
1426*c4762a1bSJed Brown   # 2D serial P1 test with field bc
1427*c4762a1bSJed Brown   test:
1428*c4762a1bSJed Brown     suffix: field_bc_2d_p1_0
1429*c4762a1bSJed Brown     requires: triangle
1430*c4762a1bSJed Brown     args: -run_type test              -interpolate 1 -bc_type dirichlet -field_bc -petscspace_degree 1 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1
1431*c4762a1bSJed Brown 
1432*c4762a1bSJed Brown   test:
1433*c4762a1bSJed Brown     suffix: field_bc_2d_p1_1
1434*c4762a1bSJed Brown     requires: triangle
1435*c4762a1bSJed Brown     args: -run_type test -dm_refine 1 -interpolate 1 -bc_type dirichlet -field_bc -petscspace_degree 1 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1
1436*c4762a1bSJed Brown 
1437*c4762a1bSJed Brown   test:
1438*c4762a1bSJed Brown     suffix: field_bc_2d_p1_neumann_0
1439*c4762a1bSJed Brown     requires: triangle
1440*c4762a1bSJed Brown     args: -run_type test              -interpolate 1 -bc_type neumann   -field_bc -petscspace_degree 1 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1
1441*c4762a1bSJed Brown 
1442*c4762a1bSJed Brown   test:
1443*c4762a1bSJed Brown     suffix: field_bc_2d_p1_neumann_1
1444*c4762a1bSJed Brown     requires: triangle
1445*c4762a1bSJed Brown     args: -run_type test -dm_refine 1 -interpolate 1 -bc_type neumann   -field_bc -petscspace_degree 1 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1
1446*c4762a1bSJed Brown 
1447*c4762a1bSJed Brown   # 3D serial P1 test with field bc
1448*c4762a1bSJed Brown   test:
1449*c4762a1bSJed Brown     suffix: field_bc_3d_p1_0
1450*c4762a1bSJed Brown     requires: ctetgen
1451*c4762a1bSJed Brown     args: -run_type test -dim 3              -interpolate 1 -bc_type dirichlet -field_bc -petscspace_degree 1 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -cells 1,1,1
1452*c4762a1bSJed Brown 
1453*c4762a1bSJed Brown   test:
1454*c4762a1bSJed Brown     suffix: field_bc_3d_p1_1
1455*c4762a1bSJed Brown     requires: ctetgen
1456*c4762a1bSJed Brown     args: -run_type test -dim 3 -dm_refine 1 -interpolate 1 -bc_type dirichlet -field_bc -petscspace_degree 1 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -cells 1,1,1
1457*c4762a1bSJed Brown 
1458*c4762a1bSJed Brown   test:
1459*c4762a1bSJed Brown     suffix: field_bc_3d_p1_neumann_0
1460*c4762a1bSJed Brown     requires: ctetgen
1461*c4762a1bSJed Brown     args: -run_type test -dim 3              -interpolate 1 -bc_type neumann   -field_bc -petscspace_degree 1 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -cells 1,1,1
1462*c4762a1bSJed Brown 
1463*c4762a1bSJed Brown   test:
1464*c4762a1bSJed Brown     suffix: field_bc_3d_p1_neumann_1
1465*c4762a1bSJed Brown     requires: ctetgen
1466*c4762a1bSJed Brown     args: -run_type test -dim 3 -dm_refine 1 -interpolate 1 -bc_type neumann   -field_bc -petscspace_degree 1 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -cells 1,1,1
1467*c4762a1bSJed Brown 
1468*c4762a1bSJed Brown   # 2D serial P2 test with field bc
1469*c4762a1bSJed Brown   test:
1470*c4762a1bSJed Brown     suffix: field_bc_2d_p2_0
1471*c4762a1bSJed Brown     requires: triangle
1472*c4762a1bSJed Brown     args: -run_type test              -interpolate 1 -bc_type dirichlet -field_bc -petscspace_degree 2 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1
1473*c4762a1bSJed Brown 
1474*c4762a1bSJed Brown   test:
1475*c4762a1bSJed Brown     suffix: field_bc_2d_p2_1
1476*c4762a1bSJed Brown     requires: triangle
1477*c4762a1bSJed Brown     args: -run_type test -dm_refine 1 -interpolate 1 -bc_type dirichlet -field_bc -petscspace_degree 2 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1
1478*c4762a1bSJed Brown 
1479*c4762a1bSJed Brown   test:
1480*c4762a1bSJed Brown     suffix: field_bc_2d_p2_neumann_0
1481*c4762a1bSJed Brown     requires: triangle
1482*c4762a1bSJed Brown     args: -run_type test              -interpolate 1 -bc_type neumann   -field_bc -petscspace_degree 2 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1
1483*c4762a1bSJed Brown 
1484*c4762a1bSJed Brown   test:
1485*c4762a1bSJed Brown     suffix: field_bc_2d_p2_neumann_1
1486*c4762a1bSJed Brown     requires: triangle
1487*c4762a1bSJed Brown     args: -run_type test -dm_refine 1 -interpolate 1 -bc_type neumann   -field_bc -petscspace_degree 2 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1
1488*c4762a1bSJed Brown 
1489*c4762a1bSJed Brown   # 3D serial P2 test with field bc
1490*c4762a1bSJed Brown   test:
1491*c4762a1bSJed Brown     suffix: field_bc_3d_p2_0
1492*c4762a1bSJed Brown     requires: ctetgen
1493*c4762a1bSJed Brown     args: -run_type test -dim 3              -interpolate 1 -bc_type dirichlet -field_bc -petscspace_degree 2 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -cells 1,1,1
1494*c4762a1bSJed Brown 
1495*c4762a1bSJed Brown   test:
1496*c4762a1bSJed Brown     suffix: field_bc_3d_p2_1
1497*c4762a1bSJed Brown     requires: ctetgen
1498*c4762a1bSJed Brown     args: -run_type test -dim 3 -dm_refine 1 -interpolate 1 -bc_type dirichlet -field_bc -petscspace_degree 2 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -cells 1,1,1
1499*c4762a1bSJed Brown 
1500*c4762a1bSJed Brown   test:
1501*c4762a1bSJed Brown     suffix: field_bc_3d_p2_neumann_0
1502*c4762a1bSJed Brown     requires: ctetgen
1503*c4762a1bSJed Brown     args: -run_type test -dim 3              -interpolate 1 -bc_type neumann   -field_bc -petscspace_degree 2 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -cells 1,1,1
1504*c4762a1bSJed Brown 
1505*c4762a1bSJed Brown   test:
1506*c4762a1bSJed Brown     suffix: field_bc_3d_p2_neumann_1
1507*c4762a1bSJed Brown     requires: ctetgen
1508*c4762a1bSJed Brown     args: -run_type test -dim 3 -dm_refine 1 -interpolate 1 -bc_type neumann   -field_bc -petscspace_degree 2 -bc_petscspace_degree 2 -show_initial -dm_plex_print_fem 1 -cells 1,1,1
1509*c4762a1bSJed Brown 
1510*c4762a1bSJed Brown   # Full solve simplex: Convergence
1511*c4762a1bSJed Brown   test:
1512*c4762a1bSJed Brown     suffix: tet_conv_p1_r0
1513*c4762a1bSJed Brown     requires: ctetgen
1514*c4762a1bSJed Brown     args: -run_type full -dim 3 -dm_refine 0 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -dm_view -snes_converged_reason ::ascii_info_detail -pc_type lu -cells 1,1,1
1515*c4762a1bSJed Brown   test:
1516*c4762a1bSJed Brown     suffix: tet_conv_p1_r2
1517*c4762a1bSJed Brown     requires: ctetgen
1518*c4762a1bSJed Brown     args: -run_type full -dim 3 -dm_refine 2 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -dm_view -snes_converged_reason ::ascii_info_detail -pc_type lu -cells 1,1,1
1519*c4762a1bSJed Brown   test:
1520*c4762a1bSJed Brown     suffix: tet_conv_p1_r3
1521*c4762a1bSJed Brown     requires: ctetgen
1522*c4762a1bSJed Brown     args: -run_type full -dim 3 -dm_refine 3 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -dm_view -snes_converged_reason ::ascii_info_detail -pc_type lu -cells 1,1,1
1523*c4762a1bSJed Brown   test:
1524*c4762a1bSJed Brown     suffix: tet_conv_p2_r0
1525*c4762a1bSJed Brown     requires: ctetgen
1526*c4762a1bSJed Brown     args: -run_type full -dim 3 -dm_refine 0 -bc_type dirichlet -interpolate 1 -petscspace_degree 2 -dm_view -snes_converged_reason ::ascii_info_detail -pc_type lu -cells 1,1,1
1527*c4762a1bSJed Brown   test:
1528*c4762a1bSJed Brown     suffix: tet_conv_p2_r2
1529*c4762a1bSJed Brown     requires: ctetgen
1530*c4762a1bSJed Brown     args: -run_type full -dim 3 -dm_refine 2 -bc_type dirichlet -interpolate 1 -petscspace_degree 2 -dm_view -snes_converged_reason ::ascii_info_detail -pc_type lu -cells 1,1,1
1531*c4762a1bSJed Brown 
1532*c4762a1bSJed Brown   # Full solve simplex: PCBDDC
1533*c4762a1bSJed Brown   test:
1534*c4762a1bSJed Brown     suffix: tri_bddc
1535*c4762a1bSJed Brown     requires: triangle !single
1536*c4762a1bSJed Brown     nsize: 5
1537*c4762a1bSJed Brown     args: -run_type full -petscpartitioner_type simple -dm_refine 2 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -ksp_type gmres -ksp_gmres_restart 100 -ksp_rtol 1.0e-9 -dm_mat_type is -pc_type bddc -snes_monitor_short -ksp_monitor_short -snes_converged_reason ::ascii_info_detail -ksp_converged_reason -snes_view -show_solution 0
1538*c4762a1bSJed Brown 
1539*c4762a1bSJed Brown   # Full solve simplex: PCBDDC
1540*c4762a1bSJed Brown   test:
1541*c4762a1bSJed Brown     suffix: tri_parmetis_bddc
1542*c4762a1bSJed Brown     requires: triangle !single parmetis
1543*c4762a1bSJed Brown     nsize: 4
1544*c4762a1bSJed Brown     args: -run_type full -petscpartitioner_type parmetis -dm_refine 2 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -ksp_type gmres -ksp_gmres_restart 100 -ksp_rtol 1.0e-9 -dm_mat_type is -pc_type bddc -snes_monitor_short -ksp_monitor_short -snes_converged_reason ::ascii_info_detail -ksp_converged_reason -snes_view -show_solution 0
1545*c4762a1bSJed Brown 
1546*c4762a1bSJed Brown   testset:
1547*c4762a1bSJed Brown     args: -run_type full -petscpartitioner_type simple -dm_refine 2 -bc_type dirichlet -interpolate 1 -petscspace_degree 2 -dm_mat_type is -pc_type bddc -ksp_type gmres -snes_monitor_short -ksp_monitor_short -snes_view -simplex 0 -petscspace_poly_tensor -pc_bddc_corner_selection -cells 3,3 -ksp_rtol 1.e-9 -pc_bddc_use_edges 0
1548*c4762a1bSJed Brown     nsize: 5
1549*c4762a1bSJed Brown     output_file: output/ex12_quad_bddc.out
1550*c4762a1bSJed Brown     filter: sed -e "s/aijcusparse/aij/g" -e "s/aijviennacl/aij/g" -e "s/factorization: cusparse/factorization: petsc/g"
1551*c4762a1bSJed Brown     test:
1552*c4762a1bSJed Brown       requires: !single
1553*c4762a1bSJed Brown       suffix: quad_bddc
1554*c4762a1bSJed Brown     test:
1555*c4762a1bSJed Brown       requires: !single cuda
1556*c4762a1bSJed Brown       suffix: quad_bddc_cuda
1557*c4762a1bSJed Brown       args: -matis_localmat_type aijcusparse -pc_bddc_dirichlet_pc_factor_mat_solver_type cusparse -pc_bddc_neumann_pc_factor_mat_solver_type cusparse
1558*c4762a1bSJed Brown     test:
1559*c4762a1bSJed Brown       requires: !single viennacl
1560*c4762a1bSJed Brown       suffix: quad_bddc_viennacl
1561*c4762a1bSJed Brown       args: -matis_localmat_type aijviennacl
1562*c4762a1bSJed Brown 
1563*c4762a1bSJed Brown   # Full solve simplex: ASM
1564*c4762a1bSJed Brown   test:
1565*c4762a1bSJed Brown     suffix: tri_q2q1_asm_lu
1566*c4762a1bSJed Brown     requires: triangle !single
1567*c4762a1bSJed Brown     args: -run_type full -dm_refine 3 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -ksp_type gmres -ksp_gmres_restart 100 -ksp_rtol 1.0e-9 -pc_type asm -pc_asm_type restrict -pc_asm_blocks 4 -sub_pc_type lu -snes_monitor_short -ksp_monitor_short -snes_converged_reason ::ascii_info_detail -ksp_converged_reason -snes_view -show_solution 0
1568*c4762a1bSJed Brown 
1569*c4762a1bSJed Brown   test:
1570*c4762a1bSJed Brown     suffix: tri_q2q1_msm_lu
1571*c4762a1bSJed Brown     requires: triangle !single
1572*c4762a1bSJed Brown     args: -run_type full -dm_refine 3 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -ksp_type gmres -ksp_gmres_restart 100 -ksp_rtol 1.0e-9 -pc_type asm -pc_asm_type restrict -pc_asm_local_type multiplicative -pc_asm_blocks 4 -sub_pc_type lu -snes_monitor_short -ksp_monitor_short -snes_converged_reason ::ascii_info_detail -ksp_converged_reason -snes_view -show_solution 0
1573*c4762a1bSJed Brown 
1574*c4762a1bSJed Brown   test:
1575*c4762a1bSJed Brown     suffix: tri_q2q1_asm_sor
1576*c4762a1bSJed Brown     requires: triangle !single
1577*c4762a1bSJed Brown     args: -run_type full -dm_refine 3 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -ksp_type gmres -ksp_gmres_restart 100 -ksp_rtol 1.0e-9 -pc_type asm -pc_asm_type restrict -pc_asm_blocks 4 -sub_pc_type sor -snes_monitor_short -ksp_monitor_short -snes_converged_reason ::ascii_info_detail -ksp_converged_reason -snes_view -show_solution 0
1578*c4762a1bSJed Brown 
1579*c4762a1bSJed Brown   test:
1580*c4762a1bSJed Brown     suffix: tri_q2q1_msm_sor
1581*c4762a1bSJed Brown     requires: triangle !single
1582*c4762a1bSJed Brown     args: -run_type full -dm_refine 3 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -ksp_type gmres -ksp_gmres_restart 100 -ksp_rtol 1.0e-9 -pc_type asm -pc_asm_type restrict -pc_asm_local_type multiplicative -pc_asm_blocks 4 -sub_pc_type sor -snes_monitor_short -ksp_monitor_short -snes_converged_reason ::ascii_info_detail -ksp_converged_reason -snes_view -show_solution 0
1583*c4762a1bSJed Brown 
1584*c4762a1bSJed Brown   # Full solve simplex: FAS
1585*c4762a1bSJed Brown   test:
1586*c4762a1bSJed Brown     suffix: fas_newton_0
1587*c4762a1bSJed Brown     requires: triangle !single
1588*c4762a1bSJed Brown     args: -run_type full -variable_coefficient nonlinear -interpolate 1 -petscspace_degree 1 -snes_type fas -snes_fas_levels 2 -fas_coarse_pc_type svd -fas_coarse_ksp_rtol 1.0e-10 -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -dm_refine_hierarchy 1 -snes_view -fas_levels_1_snes_type newtonls -fas_levels_1_pc_type svd -fas_levels_1_ksp_rtol 1.0e-10 -fas_levels_1_snes_monitor_short
1589*c4762a1bSJed Brown 
1590*c4762a1bSJed Brown   test:
1591*c4762a1bSJed Brown     suffix: fas_newton_1
1592*c4762a1bSJed Brown     requires: triangle !single
1593*c4762a1bSJed Brown     args: -run_type full -dm_refine_hierarchy 3 -interpolate 1 -petscspace_degree 1 -snes_type fas -snes_fas_levels 3 -fas_coarse_pc_type lu -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -fas_levels_snes_type newtonls -fas_levels_snes_linesearch_type basic -fas_levels_ksp_rtol 1.0e-10 -fas_levels_snes_monitor_short
1594*c4762a1bSJed Brown 
1595*c4762a1bSJed Brown   test:
1596*c4762a1bSJed Brown     suffix: fas_ngs_0
1597*c4762a1bSJed Brown     requires: triangle !single
1598*c4762a1bSJed Brown     args: -run_type full -variable_coefficient nonlinear -interpolate 1 -petscspace_degree 1 -snes_type fas -snes_fas_levels 2 -fas_coarse_pc_type svd -fas_coarse_ksp_rtol 1.0e-10 -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -dm_refine_hierarchy 1 -snes_view -fas_levels_1_snes_type ngs -fas_levels_1_snes_monitor_short
1599*c4762a1bSJed Brown 
1600*c4762a1bSJed Brown   test:
1601*c4762a1bSJed Brown     suffix: fas_newton_coarse_0
1602*c4762a1bSJed Brown     requires: pragmatic triangle
1603*c4762a1bSJed Brown     TODO: broken
1604*c4762a1bSJed Brown     args: -run_type full -dm_refine 2 -dm_plex_hash_location -variable_coefficient nonlinear -interpolate 1 -petscspace_degree 1 -snes_type fas -snes_fas_levels 2 -pc_type svd -ksp_rtol 1.0e-10 -fas_coarse_pc_type svd -fas_coarse_ksp_rtol 1.0e-10 -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -dm_coarsen_hierarchy 1 -snes_view -fas_levels_1_snes_type newtonls -fas_levels_1_pc_type svd -fas_levels_1_ksp_rtol 1.0e-10 -fas_levels_1_snes_monitor_short
1605*c4762a1bSJed Brown 
1606*c4762a1bSJed Brown   test:
1607*c4762a1bSJed Brown     suffix: mg_newton_coarse_0
1608*c4762a1bSJed Brown     requires: triangle pragmatic
1609*c4762a1bSJed Brown     TODO: broken
1610*c4762a1bSJed Brown     args: -run_type full -dm_refine 3 -interpolate 1 -petscspace_degree 1 -snes_monitor_short -ksp_monitor_true_residual -snes_converged_reason ::ascii_info_detail -dm_coarsen_hierarchy 3 -dm_plex_hash_location -snes_view -dm_view -ksp_type richardson -pc_type mg  -pc_mg_levels 4 -snes_atol 1.0e-8 -ksp_atol 1.0e-8 -snes_rtol 0.0 -ksp_rtol 0.0 -ksp_norm_type unpreconditioned -mg_levels_ksp_type gmres -mg_levels_pc_type ilu -mg_levels_ksp_max_it 10
1611*c4762a1bSJed Brown 
1612*c4762a1bSJed Brown   test:
1613*c4762a1bSJed Brown     suffix: mg_newton_coarse_1
1614*c4762a1bSJed Brown     requires: triangle pragmatic
1615*c4762a1bSJed Brown     TODO: broken
1616*c4762a1bSJed Brown     args: -run_type full -dm_refine 5 -interpolate 1 -petscspace_degree 1 -dm_coarsen_hierarchy 5 -dm_plex_hash_location -dm_plex_separate_marker -dm_plex_coarsen_bd_label marker -dm_plex_remesh_bd -ksp_type richardson -ksp_rtol 1.0e-12 -pc_type mg -pc_mg_levels 3 -mg_levels_ksp_max_it 2 -snes_converged_reason ::ascii_info_detail -snes_monitor -ksp_monitor_true_residual -mg_levels_ksp_monitor_true_residual -dm_view -ksp_view
1617*c4762a1bSJed Brown 
1618*c4762a1bSJed Brown   test:
1619*c4762a1bSJed Brown     suffix: mg_newton_coarse_2
1620*c4762a1bSJed Brown     requires: triangle pragmatic
1621*c4762a1bSJed Brown     TODO: broken
1622*c4762a1bSJed Brown     args: -run_type full -dm_refine 5 -interpolate 1 -petscspace_degree 1 -dm_coarsen_hierarchy 5 -dm_plex_hash_location -dm_plex_separate_marker -dm_plex_remesh_bd -ksp_type richardson -ksp_rtol 1.0e-12 -pc_type mg -pc_mg_levels 3 -mg_levels_ksp_max_it 2 -snes_converged_reason ::ascii_info_detail -snes_monitor -ksp_monitor_true_residual -mg_levels_ksp_monitor_true_residual -dm_view -ksp_view
1623*c4762a1bSJed Brown 
1624*c4762a1bSJed Brown   # Full solve tensor
1625*c4762a1bSJed Brown   test:
1626*c4762a1bSJed Brown     suffix: tensor_plex_2d
1627*c4762a1bSJed Brown     args: -run_type test -refinement_limit 0.0 -simplex 0 -interpolate -bc_type dirichlet -petscspace_degree 1 -dm_refine_hierarchy 2 -cells 2,2
1628*c4762a1bSJed Brown 
1629*c4762a1bSJed Brown   test:
1630*c4762a1bSJed Brown     suffix: tensor_p4est_2d
1631*c4762a1bSJed Brown     requires: p4est
1632*c4762a1bSJed Brown     args: -run_type test -refinement_limit 0.0 -simplex 0 -interpolate -bc_type dirichlet -petscspace_degree 1 -dm_forest_initial_refinement 2 -dm_forest_minimum_refinement 0 -dm_plex_convert_type p4est -cells 2,2
1633*c4762a1bSJed Brown 
1634*c4762a1bSJed Brown   test:
1635*c4762a1bSJed Brown     suffix: tensor_plex_3d
1636*c4762a1bSJed Brown     args: -run_type test -refinement_limit 0.0 -simplex 0 -interpolate -bc_type dirichlet -petscspace_degree 1 -dim 3 -dm_refine_hierarchy 1 -cells 2,2,2
1637*c4762a1bSJed Brown 
1638*c4762a1bSJed Brown   test:
1639*c4762a1bSJed Brown     suffix: tensor_p4est_3d
1640*c4762a1bSJed Brown     requires: p4est
1641*c4762a1bSJed Brown     args: -run_type test -refinement_limit 0.0 -simplex 0 -interpolate -bc_type dirichlet -petscspace_degree 1 -dm_forest_initial_refinement 1 -dm_forest_minimum_refinement 0 -dim 3 -dm_plex_convert_type p8est -cells 2,2,2
1642*c4762a1bSJed Brown 
1643*c4762a1bSJed Brown   test:
1644*c4762a1bSJed Brown     suffix: p4est_test_q2_conformal_serial
1645*c4762a1bSJed Brown     requires: p4est
1646*c4762a1bSJed Brown     args: -run_type test -interpolate 1 -petscspace_degree 2 -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -cells 2,2
1647*c4762a1bSJed Brown 
1648*c4762a1bSJed Brown   test:
1649*c4762a1bSJed Brown     suffix: p4est_test_q2_conformal_parallel
1650*c4762a1bSJed Brown     requires: p4est
1651*c4762a1bSJed Brown     nsize: 7
1652*c4762a1bSJed Brown     args: -run_type test -interpolate 1 -petscspace_degree 2 -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -petscpartitioner_type simple -cells 2,2
1653*c4762a1bSJed Brown 
1654*c4762a1bSJed Brown   test:
1655*c4762a1bSJed Brown     suffix: p4est_test_q2_conformal_parallel_parmetis
1656*c4762a1bSJed Brown     requires: parmetis p4est
1657*c4762a1bSJed Brown     nsize: 4
1658*c4762a1bSJed Brown     args: -run_type test -interpolate 1 -petscspace_degree 2 -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -petscpartitioner_type parmetis -cells 2,2
1659*c4762a1bSJed Brown 
1660*c4762a1bSJed Brown   test:
1661*c4762a1bSJed Brown     suffix: p4est_test_q2_nonconformal_serial
1662*c4762a1bSJed Brown     requires: p4est
1663*c4762a1bSJed Brown     filter: grep -v "CG or CGNE: variant"
1664*c4762a1bSJed Brown     args: -run_type test -interpolate 1 -petscspace_degree 2 -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -cells 2,2
1665*c4762a1bSJed Brown 
1666*c4762a1bSJed Brown   test:
1667*c4762a1bSJed Brown     suffix: p4est_test_q2_nonconformal_parallel
1668*c4762a1bSJed Brown     requires: p4est
1669*c4762a1bSJed Brown     filter: grep -v "CG or CGNE: variant"
1670*c4762a1bSJed Brown     nsize: 7
1671*c4762a1bSJed Brown     args: -run_type test -interpolate 1 -petscspace_degree 2 -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -petscpartitioner_type simple -cells 2,2
1672*c4762a1bSJed Brown 
1673*c4762a1bSJed Brown   test:
1674*c4762a1bSJed Brown     suffix: p4est_test_q2_nonconformal_parallel_parmetis
1675*c4762a1bSJed Brown     requires: parmetis p4est
1676*c4762a1bSJed Brown     nsize: 4
1677*c4762a1bSJed Brown     args: -run_type test -interpolate 1 -petscspace_degree 2 -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -petscpartitioner_type parmetis -cells 2,2
1678*c4762a1bSJed Brown 
1679*c4762a1bSJed Brown   test:
1680*c4762a1bSJed Brown     suffix: p4est_exact_q2_conformal_serial
1681*c4762a1bSJed Brown     requires: p4est !single !complex !__float128
1682*c4762a1bSJed Brown     args: -run_type exact -interpolate 1 -petscspace_degree 2 -fas_levels_snes_atol 1.e-10 -snes_max_it 1 -snes_type fas -snes_fas_levels 3 -fas_coarse_pc_type none -fas_coarse_ksp_type preonly -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -fas_levels_snes_type newtonls -fas_levels_pc_type none -fas_levels_ksp_type preonly -fas_levels_snes_monitor_short -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -cells 2,2
1683*c4762a1bSJed Brown 
1684*c4762a1bSJed Brown   test:
1685*c4762a1bSJed Brown     suffix: p4est_exact_q2_conformal_parallel
1686*c4762a1bSJed Brown     requires: p4est !single !complex !__float128
1687*c4762a1bSJed Brown     nsize: 4
1688*c4762a1bSJed Brown     args: -run_type exact -interpolate 1 -petscspace_degree 2 -fas_levels_snes_atol 1.e-10 -snes_max_it 1 -snes_type fas -snes_fas_levels 3 -fas_coarse_pc_type none -fas_coarse_ksp_type preonly -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -fas_levels_snes_type newtonls -fas_levels_pc_type none -fas_levels_ksp_type preonly -fas_levels_snes_monitor_short -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -cells 2,2
1689*c4762a1bSJed Brown 
1690*c4762a1bSJed Brown   test:
1691*c4762a1bSJed Brown     suffix: p4est_exact_q2_conformal_parallel_parmetis
1692*c4762a1bSJed Brown     requires: parmetis p4est !single
1693*c4762a1bSJed Brown     nsize: 4
1694*c4762a1bSJed Brown     args: -run_type exact -interpolate 1 -petscspace_degree 2 -fas_levels_snes_atol 1.e-10 -snes_max_it 1 -snes_type fas -snes_fas_levels 3 -fas_coarse_pc_type none -fas_coarse_ksp_type preonly -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -fas_levels_snes_type newtonls -fas_levels_pc_type none -fas_levels_ksp_type preonly -fas_levels_snes_monitor_short -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -petscpartitioner_type parmetis  -cells 2,2
1695*c4762a1bSJed Brown 
1696*c4762a1bSJed Brown   test:
1697*c4762a1bSJed Brown     suffix: p4est_exact_q2_nonconformal_serial
1698*c4762a1bSJed Brown     requires: p4est
1699*c4762a1bSJed Brown     args: -run_type exact -interpolate 1 -petscspace_degree 2 -fas_levels_snes_atol 1.e-10 -snes_max_it 1 -snes_type fas -snes_fas_levels 3 -fas_coarse_pc_type none -fas_coarse_ksp_type preonly -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -fas_levels_snes_type newtonls -fas_levels_pc_type none -fas_levels_ksp_type preonly -fas_levels_snes_monitor_short -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -cells 2,2
1700*c4762a1bSJed Brown 
1701*c4762a1bSJed Brown   test:
1702*c4762a1bSJed Brown     suffix: p4est_exact_q2_nonconformal_parallel
1703*c4762a1bSJed Brown     requires: p4est
1704*c4762a1bSJed Brown     nsize: 7
1705*c4762a1bSJed Brown     args: -run_type exact -interpolate 1 -petscspace_degree 2 -fas_levels_snes_atol 1.e-10 -snes_max_it 1 -snes_type fas -snes_fas_levels 3 -fas_coarse_pc_type none -fas_coarse_ksp_type preonly -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -fas_levels_snes_type newtonls -fas_levels_pc_type none -fas_levels_ksp_type preonly -fas_levels_snes_monitor_short -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -petscpartitioner_type simple -cells 2,2
1706*c4762a1bSJed Brown 
1707*c4762a1bSJed Brown   test:
1708*c4762a1bSJed Brown     suffix: p4est_exact_q2_nonconformal_parallel_parmetis
1709*c4762a1bSJed Brown     requires: parmetis p4est
1710*c4762a1bSJed Brown     nsize: 4
1711*c4762a1bSJed Brown     args: -run_type exact -interpolate 1 -petscspace_degree 2 -fas_levels_snes_atol 1.e-10 -snes_max_it 1 -snes_type fas -snes_fas_levels 3 -fas_coarse_pc_type none -fas_coarse_ksp_type preonly -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -fas_levels_snes_type newtonls -fas_levels_pc_type none -fas_levels_ksp_type preonly -fas_levels_snes_monitor_short -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -petscpartitioner_type parmetis -cells 2,2
1712*c4762a1bSJed Brown 
1713*c4762a1bSJed Brown   test:
1714*c4762a1bSJed Brown     suffix: p4est_full_q2_nonconformal_serial
1715*c4762a1bSJed Brown     requires: p4est !single
1716*c4762a1bSJed Brown     filter: grep -v "variant HERMITIAN"
1717*c4762a1bSJed Brown     args: -run_type full -interpolate 1 -petscspace_degree 2 -snes_max_it 20 -snes_type fas -snes_fas_levels 3 -fas_coarse_pc_type jacobi -fas_coarse_ksp_type cg -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -fas_levels_snes_type newtonls -fas_levels_pc_type jacobi -fas_levels_ksp_type cg -fas_levels_snes_monitor_short -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -cells 2,2
1718*c4762a1bSJed Brown 
1719*c4762a1bSJed Brown   test:
1720*c4762a1bSJed Brown     suffix: p4est_full_q2_nonconformal_parallel
1721*c4762a1bSJed Brown     requires: p4est !single
1722*c4762a1bSJed Brown     filter: grep -v "variant HERMITIAN"
1723*c4762a1bSJed Brown     nsize: 7
1724*c4762a1bSJed Brown     args: -run_type full -interpolate 1 -petscspace_degree 2 -snes_max_it 20 -snes_type fas -snes_fas_levels 3 -fas_coarse_pc_type jacobi -fas_coarse_ksp_type cg -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -fas_levels_snes_type newtonls -fas_levels_pc_type jacobi -fas_levels_ksp_type cg -fas_levels_snes_monitor_short -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -petscpartitioner_type simple -cells 2,2
1725*c4762a1bSJed Brown 
1726*c4762a1bSJed Brown   test:
1727*c4762a1bSJed Brown     suffix: p4est_full_q2_nonconformal_parallel_bddcfas
1728*c4762a1bSJed Brown     requires: p4est !single
1729*c4762a1bSJed Brown     filter: grep -v "variant HERMITIAN"
1730*c4762a1bSJed Brown     nsize: 7
1731*c4762a1bSJed Brown     args: -run_type full -interpolate 1 -petscspace_degree 2 -snes_max_it 20 -snes_type fas -snes_fas_levels 3 -dm_mat_type is -fas_coarse_pc_type bddc -fas_coarse_ksp_type cg -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -fas_levels_snes_type newtonls -fas_levels_pc_type bddc -fas_levels_ksp_type cg -fas_levels_snes_monitor_short -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -petscpartitioner_type simple -cells 2,2
1732*c4762a1bSJed Brown 
1733*c4762a1bSJed Brown   test:
1734*c4762a1bSJed Brown     suffix: p4est_full_q2_nonconformal_parallel_bddc
1735*c4762a1bSJed Brown     requires: p4est !single
1736*c4762a1bSJed Brown     filter: grep -v "variant HERMITIAN"
1737*c4762a1bSJed Brown     nsize: 7
1738*c4762a1bSJed Brown     args: -run_type full -interpolate 1 -petscspace_degree 2 -snes_max_it 20 -snes_type newtonls -dm_mat_type is -pc_type bddc -ksp_type cg -snes_monitor_short -snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -petscpartitioner_type simple -cells 2,2
1739*c4762a1bSJed Brown 
1740*c4762a1bSJed Brown   test:
1741*c4762a1bSJed Brown     TODO: broken
1742*c4762a1bSJed Brown     suffix: p4est_fas_q2_conformal_serial
1743*c4762a1bSJed Brown     requires: p4est !complex !__float128
1744*c4762a1bSJed Brown     args: -run_type full -variable_coefficient nonlinear -interpolate 1 -petscspace_degree 2 -snes_max_it 20 -snes_type fas -snes_fas_levels 3 -pc_type jacobi -ksp_type gmres -fas_coarse_pc_type svd -fas_coarse_ksp_type gmres -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -fas_levels_snes_type newtonls -fas_levels_pc_type svd -fas_levels_ksp_type gmres -fas_levels_snes_monitor_short -simplex 0 -dm_refine_hierarchy 3 -cells 2,2
1745*c4762a1bSJed Brown 
1746*c4762a1bSJed Brown   test:
1747*c4762a1bSJed Brown     TODO: broken
1748*c4762a1bSJed Brown     suffix: p4est_fas_q2_nonconformal_serial
1749*c4762a1bSJed Brown     requires: p4est
1750*c4762a1bSJed Brown     args: -run_type full -variable_coefficient nonlinear -interpolate 1 -petscspace_degree 2 -snes_max_it 20 -snes_type fas -snes_fas_levels 3 -pc_type jacobi -ksp_type gmres -fas_coarse_pc_type jacobi -fas_coarse_ksp_type gmres -fas_coarse_ksp_monitor_true_residual -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -fas_levels_snes_type newtonls -fas_levels_pc_type jacobi -fas_levels_ksp_type gmres -fas_levels_snes_monitor_short -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -cells 2,2
1751*c4762a1bSJed Brown 
1752*c4762a1bSJed Brown   test:
1753*c4762a1bSJed Brown     suffix: fas_newton_0_p4est
1754*c4762a1bSJed Brown     requires: p4est !single !__float128
1755*c4762a1bSJed Brown     args: -run_type full -variable_coefficient nonlinear -interpolate 1 -petscspace_degree 1 -snes_type fas -snes_fas_levels 2 -fas_coarse_pc_type svd -fas_coarse_ksp_rtol 1.0e-10 -fas_coarse_snes_monitor_short -snes_monitor_short -fas_coarse_snes_linesearch_type basic -snes_converged_reason ::ascii_info_detail -snes_view -fas_levels_1_snes_type newtonls -fas_levels_1_pc_type svd -fas_levels_1_ksp_rtol 1.0e-10 -fas_levels_1_snes_monitor_short -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -cells 2,2
1756*c4762a1bSJed Brown 
1757*c4762a1bSJed Brown   # Full solve simplicial AMR
1758*c4762a1bSJed Brown   test:
1759*c4762a1bSJed Brown     suffix: tri_p1_adapt_0
1760*c4762a1bSJed Brown     requires: pragmatic
1761*c4762a1bSJed Brown     TODO: broken
1762*c4762a1bSJed Brown     args: -run_type exact -dim 2 -dm_refine 5 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -variable_coefficient circle -snes_converged_reason ::ascii_info_detail -pc_type lu -adaptor_refinement_factor 1.0 -dm_view -dm_adapt_view -snes_adapt_initial 1
1763*c4762a1bSJed Brown 
1764*c4762a1bSJed Brown   test:
1765*c4762a1bSJed Brown     suffix: tri_p1_adapt_1
1766*c4762a1bSJed Brown     requires: pragmatic
1767*c4762a1bSJed Brown     TODO: broken
1768*c4762a1bSJed Brown     args: -run_type exact -dim 2 -dm_refine 5 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -variable_coefficient circle -snes_converged_reason ::ascii_info_detail -pc_type lu -adaptor_refinement_factor 1.0 -dm_view -dm_adapt_iter_view -dm_adapt_view -snes_adapt_sequence 2
1769*c4762a1bSJed Brown 
1770*c4762a1bSJed Brown   test:
1771*c4762a1bSJed Brown     suffix: tri_p1_adapt_analytic_0
1772*c4762a1bSJed Brown     requires: pragmatic
1773*c4762a1bSJed Brown     TODO: broken
1774*c4762a1bSJed Brown     args: -run_type exact -dim 2 -dm_refine 3 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -variable_coefficient cross -snes_adapt_initial 4 -adaptor_target_num 500 -adaptor_monitor -dm_view -dm_adapt_iter_view
1775*c4762a1bSJed Brown 
1776*c4762a1bSJed Brown   # Full solve tensor AMR
1777*c4762a1bSJed Brown   test:
1778*c4762a1bSJed Brown     suffix: quad_q1_adapt_0
1779*c4762a1bSJed Brown     requires: p4est
1780*c4762a1bSJed Brown     args: -run_type exact -dim 2 -simplex 0 -dm_plex_convert_type p4est -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -variable_coefficient circle -snes_converged_reason ::ascii_info_detail -pc_type lu -dm_forest_initial_refinement 4   -snes_adapt_initial 1 -dm_view
1781*c4762a1bSJed Brown     filter: grep -v DM_
1782*c4762a1bSJed Brown 
1783*c4762a1bSJed Brown   test:
1784*c4762a1bSJed Brown     suffix: amr_0
1785*c4762a1bSJed Brown     nsize: 5
1786*c4762a1bSJed Brown     args: -run_type test -petscpartitioner_type simple -refinement_limit 0.0 -simplex 0 -interpolate -bc_type dirichlet -petscspace_degree 1 -dm_refine 1 -cells 2,2
1787*c4762a1bSJed Brown 
1788*c4762a1bSJed Brown   test:
1789*c4762a1bSJed Brown     suffix: amr_1
1790*c4762a1bSJed Brown     requires: p4est !complex
1791*c4762a1bSJed Brown     args: -run_type test -refinement_limit 0.0 -simplex 0 -interpolate -bc_type dirichlet -petscspace_degree 1 -dm_plex_convert_type p4est -dm_p4est_refine_pattern center -dm_forest_maximum_refinement 5 -dm_view vtk:amr.vtu:vtk_vtu -vec_view vtk:amr.vtu:vtk_vtu:append -cells 2,2
1792*c4762a1bSJed Brown 
1793*c4762a1bSJed Brown   test:
1794*c4762a1bSJed Brown     suffix: p4est_solve_bddc
1795*c4762a1bSJed Brown     requires: p4est !complex
1796*c4762a1bSJed Brown     args: -run_type full -variable_coefficient nonlinear -nonzero_initial_guess 1 -interpolate 1 -petscspace_degree 2 -snes_max_it 20 -snes_type newtonls -dm_mat_type is -pc_type bddc -ksp_type cg -snes_monitor_short -ksp_monitor -snes_linesearch_type bt -snes_converged_reason -snes_view -simplex 0 -petscspace_poly_tensor -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -petscpartitioner_type simple -pc_bddc_detect_disconnected
1797*c4762a1bSJed Brown     nsize: 4
1798*c4762a1bSJed Brown 
1799*c4762a1bSJed Brown   test:
1800*c4762a1bSJed Brown     suffix: p4est_solve_fas
1801*c4762a1bSJed Brown     requires: p4est
1802*c4762a1bSJed Brown     args: -run_type full -variable_coefficient nonlinear -nonzero_initial_guess 1 -interpolate 1 -petscspace_degree 2 -snes_max_it 10 -snes_type fas -snes_linesearch_type bt -snes_fas_levels 3 -fas_coarse_snes_type newtonls -fas_coarse_snes_linesearch_type basic -fas_coarse_ksp_type cg -fas_coarse_pc_type jacobi -fas_coarse_snes_monitor_short -fas_levels_snes_max_it 4 -fas_levels_snes_type newtonls -fas_levels_snes_linesearch_type bt -fas_levels_ksp_type cg -fas_levels_pc_type jacobi -fas_levels_snes_monitor_short -fas_levels_cycle_snes_linesearch_type bt -snes_monitor_short -snes_converged_reason -snes_view -simplex 0 -petscspace_poly_tensor -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash
1803*c4762a1bSJed Brown     nsize: 4
1804*c4762a1bSJed Brown     TODO: identical machine two runs produce slightly different solver trackers
1805*c4762a1bSJed Brown 
1806*c4762a1bSJed Brown   test:
1807*c4762a1bSJed Brown     suffix: p4est_convergence_test_1
1808*c4762a1bSJed Brown     requires: p4est
1809*c4762a1bSJed Brown     args:  -quiet -run_type test -interpolate 1 -petscspace_degree 1 -simplex 0 -petscspace_poly_tensor -dm_plex_convert_type p4est -dm_forest_minimum_refinement 2 -dm_forest_initial_refinement 2 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash
1810*c4762a1bSJed Brown     nsize: 4
1811*c4762a1bSJed Brown 
1812*c4762a1bSJed Brown   test:
1813*c4762a1bSJed Brown     suffix: p4est_convergence_test_2
1814*c4762a1bSJed Brown     requires: p4est
1815*c4762a1bSJed Brown     args: -quiet -run_type test -interpolate 1 -petscspace_degree 1 -simplex 0 -petscspace_poly_tensor -dm_plex_convert_type p4est -dm_forest_minimum_refinement 3 -dm_forest_initial_refinement 3 -dm_forest_maximum_refinement 5 -dm_p4est_refine_pattern hash
1816*c4762a1bSJed Brown 
1817*c4762a1bSJed Brown   test:
1818*c4762a1bSJed Brown     suffix: p4est_convergence_test_3
1819*c4762a1bSJed Brown     requires: p4est
1820*c4762a1bSJed Brown     args: -quiet -run_type test -interpolate 1 -petscspace_degree 1 -simplex 0 -petscspace_poly_tensor -dm_plex_convert_type p4est -dm_forest_minimum_refinement 4 -dm_forest_initial_refinement 4 -dm_forest_maximum_refinement 6 -dm_p4est_refine_pattern hash
1821*c4762a1bSJed Brown 
1822*c4762a1bSJed Brown   test:
1823*c4762a1bSJed Brown     suffix: p4est_convergence_test_4
1824*c4762a1bSJed Brown     requires: p4est
1825*c4762a1bSJed Brown     args: -quiet -run_type test -interpolate 1 -petscspace_degree 1 -simplex 0 -petscspace_poly_tensor -dm_plex_convert_type p4est -dm_forest_minimum_refinement 5 -dm_forest_initial_refinement 5 -dm_forest_maximum_refinement 7 -dm_p4est_refine_pattern hash
1826*c4762a1bSJed Brown     timeoutfactor: 5
1827*c4762a1bSJed Brown 
1828*c4762a1bSJed Brown   # Serial tests with GLVis visualization
1829*c4762a1bSJed Brown   test:
1830*c4762a1bSJed Brown     suffix: glvis_2d_tet_p1
1831*c4762a1bSJed Brown     args: -quiet -run_type test -interpolate 1 -bc_type dirichlet -petscspace_degree 1 -vec_view glvis: -f ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_periodic.msh -dm_plex_gmsh_periodic 0
1832*c4762a1bSJed Brown   test:
1833*c4762a1bSJed Brown     suffix: glvis_2d_tet_p2
1834*c4762a1bSJed Brown     args: -quiet -run_type test -interpolate 1 -bc_type dirichlet -petscspace_degree 2 -vec_view glvis: -f ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_periodic.msh -dm_plex_gmsh_periodic 0
1835*c4762a1bSJed Brown   test:
1836*c4762a1bSJed Brown     suffix: glvis_2d_hex_p1
1837*c4762a1bSJed Brown     args: -quiet -run_type test -interpolate 1 -bc_type dirichlet -petscspace_degree 1 -vec_view glvis: -simplex 0 -dm_refine 1
1838*c4762a1bSJed Brown   test:
1839*c4762a1bSJed Brown     suffix: glvis_2d_hex_p2
1840*c4762a1bSJed Brown     args: -quiet -run_type test -interpolate 1 -bc_type dirichlet -petscspace_degree 2 -vec_view glvis: -simplex 0 -dm_refine 1
1841*c4762a1bSJed Brown   test:
1842*c4762a1bSJed Brown     suffix: glvis_2d_hex_p2_p4est
1843*c4762a1bSJed Brown     requires: p4est
1844*c4762a1bSJed Brown     args: -quiet -run_type test -interpolate 1 -bc_type dirichlet -petscspace_degree 2 -vec_view glvis: -simplex 0 -dm_plex_convert_type p4est -dm_forest_minimum_refinement 0 -dm_forest_initial_refinement 1 -dm_forest_maximum_refinement 4 -dm_p4est_refine_pattern hash -cells 2,2 -viewer_glvis_dm_plex_enable_ncmesh
1845*c4762a1bSJed Brown   test:
1846*c4762a1bSJed Brown     suffix: glvis_2d_tet_p0
1847*c4762a1bSJed Brown     args: -run_type exact  -interpolate 1 -guess_vec_view glvis: -nonzero_initial_guess 1 -f ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_periodic.msh -petscspace_degree 0
1848*c4762a1bSJed Brown   test:
1849*c4762a1bSJed Brown     suffix: glvis_2d_hex_p0
1850*c4762a1bSJed Brown     args: -run_type exact  -interpolate 1 -guess_vec_view glvis: -nonzero_initial_guess 1 -cells 5,7  -simplex 0 -petscspace_degree 0
1851*c4762a1bSJed Brown 
1852*c4762a1bSJed Brown   # PCHPDDM tests
1853*c4762a1bSJed Brown   testset:
1854*c4762a1bSJed Brown     nsize: 4
1855*c4762a1bSJed Brown     requires: hpddm slepc !single
1856*c4762a1bSJed Brown     args: -run_type test -run_test_check_ksp -quiet -petscspace_degree 1 -interpolate 1 -petscpartitioner_type simple -bc_type none -simplex 0 -pc_type hpddm -pc_hpddm_levels_1_sub_pc_type lu -pc_hpddm_levels_1_eps_nev 2 -pc_hpddm_coarse_p 1 -pc_hpddm_coarse_pc_type svd -ksp_rtol 1.e-10 -pc_hpddm_levels_1_st_pc_factor_shift_type INBLOCKS -ksp_converged_reason
1857*c4762a1bSJed Brown     test:
1858*c4762a1bSJed Brown       suffix: quad_singular_hpddm
1859*c4762a1bSJed Brown       args: -cells 6,7
1860*c4762a1bSJed Brown     test:
1861*c4762a1bSJed Brown       requires: p4est
1862*c4762a1bSJed Brown       suffix: p4est_singular_2d_hpddm
1863*c4762a1bSJed Brown       args: -dm_plex_convert_type p4est -dm_forest_minimum_refinement 1 -dm_forest_initial_refinement 3 -dm_forest_maximum_refinement 3
1864*c4762a1bSJed Brown     test:
1865*c4762a1bSJed Brown       requires: p4est
1866*c4762a1bSJed Brown       suffix: p4est_nc_singular_2d_hpddm
1867*c4762a1bSJed Brown       args: -dm_plex_convert_type p4est -dm_forest_minimum_refinement 1 -dm_forest_initial_refinement 1 -dm_forest_maximum_refinement 3 -dm_p4est_refine_pattern hash
1868*c4762a1bSJed Brown   testset:
1869*c4762a1bSJed Brown     nsize: 4
1870*c4762a1bSJed Brown     requires: hpddm slepc triangle !single
1871*c4762a1bSJed Brown     args: -run_type full -petscpartitioner_type simple -dm_refine 2 -bc_type dirichlet -interpolate 1 -petscspace_degree 2 -ksp_type gmres -ksp_gmres_restart 100 -pc_type hpddm -snes_monitor_short -ksp_monitor_short -snes_converged_reason ::ascii_info_detail -ksp_converged_reason -snes_view -show_solution 0 -pc_type hpddm -pc_hpddm_levels_1_sub_pc_type lu -pc_hpddm_levels_1_eps_nev 4 -pc_hpddm_coarse_p 2 -pc_hpddm_coarse_pc_type redundant -ksp_rtol 1.e-1
1872*c4762a1bSJed Brown     test:
1873*c4762a1bSJed Brown       args: -pc_hpddm_coarse_mat_type baij -options_left no
1874*c4762a1bSJed Brown       suffix: tri_hpddm_reuse_baij
1875*c4762a1bSJed Brown     test:
1876*c4762a1bSJed Brown       requires: !complex
1877*c4762a1bSJed Brown       suffix: tri_hpddm_reuse
1878*c4762a1bSJed Brown   testset:
1879*c4762a1bSJed Brown     nsize: 4
1880*c4762a1bSJed Brown     requires: hpddm slepc !single
1881*c4762a1bSJed Brown     args: -run_type full -petscpartitioner_type simple -cells 7,5 -dm_refine 2 -simplex 0 -bc_type dirichlet -interpolate 1 -petscspace_degree 2 -ksp_type gmres -ksp_gmres_restart 100 -pc_type hpddm -snes_monitor_short -ksp_monitor_short -snes_converged_reason ::ascii_info_detail -ksp_converged_reason -snes_view -show_solution 0 -pc_type hpddm -pc_hpddm_levels_1_sub_pc_type lu -pc_hpddm_levels_1_eps_nev 4 -pc_hpddm_coarse_p 2 -pc_hpddm_coarse_pc_type redundant -ksp_rtol 1.e-1
1882*c4762a1bSJed Brown     test:
1883*c4762a1bSJed Brown       args: -pc_hpddm_coarse_mat_type baij -options_left no
1884*c4762a1bSJed Brown       suffix: quad_hpddm_reuse_baij
1885*c4762a1bSJed Brown     test:
1886*c4762a1bSJed Brown       requires: !complex
1887*c4762a1bSJed Brown       suffix: quad_hpddm_reuse
1888*c4762a1bSJed Brown   testset:
1889*c4762a1bSJed Brown     nsize: 4
1890*c4762a1bSJed Brown     requires: hpddm slepc !single
1891*c4762a1bSJed Brown     args: -run_type full -petscpartitioner_type simple -cells 7,5 -dm_refine 2 -simplex 0 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -ksp_type gmres -ksp_gmres_restart 100 -pc_type hpddm -snes_monitor_short -ksp_monitor_short -snes_converged_reason ::ascii_info_detail -ksp_converged_reason -snes_view -show_solution 0 -pc_type hpddm -pc_hpddm_levels_1_sub_pc_type lu -pc_hpddm_levels_1_eps_threshold 0.1 -pc_hpddm_coarse_p 2 -pc_hpddm_coarse_pc_type redundant -ksp_rtol 1.e-1
1892*c4762a1bSJed Brown     test:
1893*c4762a1bSJed Brown       args: -pc_hpddm_coarse_mat_type baij -options_left no
1894*c4762a1bSJed Brown       suffix: quad_hpddm_reuse_threshold_baij
1895*c4762a1bSJed Brown     test:
1896*c4762a1bSJed Brown       requires: !complex
1897*c4762a1bSJed Brown       suffix: quad_hpddm_reuse_threshold
1898*c4762a1bSJed Brown   testset:
1899*c4762a1bSJed Brown     nsize: 4
1900*c4762a1bSJed Brown     requires: hpddm slepc parmetis !single
1901*c4762a1bSJed Brown     args: -run_type full -petscpartitioner_type parmetis -dm_refine 3 -bc_type dirichlet -interpolate 1 -petscspace_degree 1 -ksp_type gmres -ksp_gmres_restart 100 -pc_type hpddm -snes_monitor_short -ksp_monitor_short -snes_converged_reason ::ascii_info_detail -ksp_converged_reason -snes_view -show_solution 0 -pc_type hpddm -pc_hpddm_levels_1_sub_pc_type icc -pc_hpddm_levels_1_eps_nev 20 -pc_hpddm_coarse_p 2 -pc_hpddm_coarse_pc_type redundant -ksp_rtol 1.e-10 -f ${PETSC_DIR}/share/petsc/datafiles/meshes/square_periodic.msh -pc_hpddm_levels_1_sub_pc_factor_levels 3 -variable_coefficient circle -dm_plex_gmsh_periodic 0
1902*c4762a1bSJed Brown     test:
1903*c4762a1bSJed Brown       args: -pc_hpddm_coarse_mat_type baij -options_left no
1904*c4762a1bSJed Brown       suffix: tri_parmetis_hpddm_baij
1905*c4762a1bSJed Brown     test:
1906*c4762a1bSJed Brown       requires: !complex
1907*c4762a1bSJed Brown       suffix: tri_parmetis_hpddm
1908*c4762a1bSJed Brown TEST*/
1909