xref: /petsc/src/snes/tutorials/ex48.c (revision 9d47de495d3c23378050c1b4a410c12a375cb6c6)
1c4762a1bSJed Brown static const char help[] = "Toy hydrostatic ice flow with multigrid in 3D.\n\
2c4762a1bSJed Brown \n\
3c4762a1bSJed Brown Solves the hydrostatic (aka Blatter/Pattyn/First Order) equations for ice sheet flow\n\
4c4762a1bSJed Brown using multigrid.  The ice uses a power-law rheology with \"Glen\" exponent 3 (corresponds\n\
5c4762a1bSJed Brown to p=4/3 in a p-Laplacian).  The focus is on ISMIP-HOM experiments which assume periodic\n\
6c4762a1bSJed Brown boundary conditions in the x- and y-directions.\n\
7c4762a1bSJed Brown \n\
8c4762a1bSJed Brown Equations are rescaled so that the domain size and solution are O(1), details of this scaling\n\
9c4762a1bSJed Brown can be controlled by the options -units_meter, -units_second, and -units_kilogram.\n\
10c4762a1bSJed Brown \n\
11c4762a1bSJed Brown A VTK StructuredGrid output file can be written using the option -o filename.vts\n\
12c4762a1bSJed Brown \n\n";
13c4762a1bSJed Brown 
14c4762a1bSJed Brown /*
15c4762a1bSJed Brown The equations for horizontal velocity (u,v) are
16c4762a1bSJed Brown 
17c4762a1bSJed Brown   - [eta (4 u_x + 2 v_y)]_x - [eta (u_y + v_x)]_y - [eta u_z]_z + rho g s_x = 0
18c4762a1bSJed Brown   - [eta (4 v_y + 2 u_x)]_y - [eta (u_y + v_x)]_x - [eta v_z]_z + rho g s_y = 0
19c4762a1bSJed Brown 
20c4762a1bSJed Brown where
21c4762a1bSJed Brown 
22c4762a1bSJed Brown   eta = B/2 (epsilon + gamma)^((p-2)/2)
23c4762a1bSJed Brown 
24c4762a1bSJed Brown is the nonlinear effective viscosity with regularization epsilon and hardness parameter B,
25c4762a1bSJed Brown written in terms of the second invariant
26c4762a1bSJed Brown 
27c4762a1bSJed Brown   gamma = u_x^2 + v_y^2 + u_x v_y + (1/4) (u_y + v_x)^2 + (1/4) u_z^2 + (1/4) v_z^2
28c4762a1bSJed Brown 
29c4762a1bSJed Brown The surface boundary conditions are the natural conditions.  The basal boundary conditions
30c4762a1bSJed Brown are either no-slip, or Navier (linear) slip with spatially variant friction coefficient beta^2.
31c4762a1bSJed Brown 
32c4762a1bSJed Brown In the code, the equations for (u,v) are multiplied through by 1/(rho g) so that residuals are O(1).
33c4762a1bSJed Brown 
34c4762a1bSJed Brown The discretization is Q1 finite elements, managed by a DMDA.  The grid is never distorted in the
35c4762a1bSJed Brown map (x,y) plane, but the bed and surface may be bumpy.  This is handled as usual in FEM, through
36c4762a1bSJed Brown the Jacobian of the coordinate transformation from a reference element to the physical element.
37c4762a1bSJed Brown 
38c4762a1bSJed Brown Since ice-flow is tightly coupled in the z-direction (within columns), the DMDA is managed
39c4762a1bSJed Brown specially so that columns are never distributed, and are always contiguous in memory.
40c4762a1bSJed Brown This amounts to reversing the meaning of X,Y,Z compared to the DMDA's internal interpretation,
41c4762a1bSJed Brown and then indexing as vec[i][j][k].  The exotic coarse spaces require 2D DMDAs which are made to
42c4762a1bSJed Brown use compatible domain decomposition relative to the 3D DMDAs.
43c4762a1bSJed Brown 
44c4762a1bSJed Brown There are two compile-time options:
45c4762a1bSJed Brown 
46c4762a1bSJed Brown   NO_SSE2:
47c4762a1bSJed Brown     If the host supports SSE2, we use integration code that has been vectorized with SSE2
48c4762a1bSJed Brown     intrinsics, unless this macro is defined.  The intrinsics speed up integration by about
49c4762a1bSJed Brown     30% on my architecture (P8700, gcc-4.5 snapshot).
50c4762a1bSJed Brown 
51c4762a1bSJed Brown   COMPUTE_LOWER_TRIANGULAR:
52c4762a1bSJed Brown     The element matrices we assemble are lower-triangular so it is not necessary to compute
53c4762a1bSJed Brown     all entries explicitly.  If this macro is defined, the lower-triangular entries are
54c4762a1bSJed Brown     computed explicitly.
55c4762a1bSJed Brown 
56c4762a1bSJed Brown */
57c4762a1bSJed Brown 
58c4762a1bSJed Brown #if defined(PETSC_APPLE_FRAMEWORK)
59c4762a1bSJed Brown   #import <PETSc/petscsnes.h>
60c4762a1bSJed Brown   #import <PETSc/petsc/private/dmdaimpl.h> /* There is not yet a public interface to manipulate dm->ops */
61c4762a1bSJed Brown #else
62c4762a1bSJed Brown 
63c4762a1bSJed Brown   #include <petscsnes.h>
64c4762a1bSJed Brown   #include <petsc/private/dmdaimpl.h> /* There is not yet a public interface to manipulate dm->ops */
65c4762a1bSJed Brown #endif
66c4762a1bSJed Brown #include <ctype.h> /* toupper() */
67c4762a1bSJed Brown 
68c4762a1bSJed Brown #if defined(__cplusplus) || defined(PETSC_HAVE_WINDOWS_COMPILERS) || defined(__PGI)
69c4762a1bSJed Brown   /*  c++ cannot handle  [_restrict_] notation like C does */
70c4762a1bSJed Brown   #undef PETSC_RESTRICT
71c4762a1bSJed Brown   #define PETSC_RESTRICT
72c4762a1bSJed Brown #endif
73c4762a1bSJed Brown 
74*beceaeb6SBarry Smith #if defined(__SSE2__)
75c4762a1bSJed Brown   #include <emmintrin.h>
76c4762a1bSJed Brown #endif
77c4762a1bSJed Brown 
78c4762a1bSJed Brown /* The SSE2 kernels are only for PetscScalar=double on architectures that support it */
79*beceaeb6SBarry Smith #if !defined(NO_SSE2) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_REAL_SINGLE) && !defined(PETSC_USE_REAL___FLOAT128) && !defined(PETSC_USE_REAL___FP16) && defined(__SSE2__)
80c4762a1bSJed Brown   #define USE_SSE2_KERNELS 1
81c4762a1bSJed Brown #else
82c4762a1bSJed Brown   #define USE_SSE2_KERNELS 0
83c4762a1bSJed Brown #endif
84c4762a1bSJed Brown 
85c4762a1bSJed Brown static PetscClassId THI_CLASSID;
86c4762a1bSJed Brown 
879371c9d4SSatish Balay typedef enum {
889371c9d4SSatish Balay   QUAD_GAUSS,
899371c9d4SSatish Balay   QUAD_LOBATTO
909371c9d4SSatish Balay } QuadratureType;
91c4762a1bSJed Brown static const char                  *QuadratureTypes[] = {"gauss", "lobatto", "QuadratureType", "QUAD_", 0};
92c4762a1bSJed Brown PETSC_UNUSED static const PetscReal HexQWeights[8]    = {1, 1, 1, 1, 1, 1, 1, 1};
93c4762a1bSJed Brown PETSC_UNUSED static const PetscReal HexQNodes[]       = {-0.57735026918962573, 0.57735026918962573};
94c4762a1bSJed Brown #define G 0.57735026918962573
95c4762a1bSJed Brown #define H (0.5 * (1. + G))
96c4762a1bSJed Brown #define L (0.5 * (1. - G))
97c4762a1bSJed Brown #define M (-0.5)
98c4762a1bSJed Brown #define P (0.5)
99c4762a1bSJed Brown /* Special quadrature: Lobatto in horizontal, Gauss in vertical */
1009371c9d4SSatish Balay static const PetscReal HexQInterp_Lobatto[8][8] = {
1019371c9d4SSatish Balay   {H, 0, 0, 0, L, 0, 0, 0},
102c4762a1bSJed Brown   {0, H, 0, 0, 0, L, 0, 0},
103c4762a1bSJed Brown   {0, 0, H, 0, 0, 0, L, 0},
104c4762a1bSJed Brown   {0, 0, 0, H, 0, 0, 0, L},
105c4762a1bSJed Brown   {L, 0, 0, 0, H, 0, 0, 0},
106c4762a1bSJed Brown   {0, L, 0, 0, 0, H, 0, 0},
107c4762a1bSJed Brown   {0, 0, L, 0, 0, 0, H, 0},
1089371c9d4SSatish Balay   {0, 0, 0, L, 0, 0, 0, H}
1099371c9d4SSatish Balay };
110c4762a1bSJed Brown static const PetscReal HexQDeriv_Lobatto[8][8][3] = {
111c4762a1bSJed Brown   {{M * H, M *H, M}, {P * H, 0, 0},    {0, 0, 0},        {0, P *H, 0},     {M * L, M *L, P}, {P * L, 0, 0},    {0, 0, 0},        {0, P *L, 0}    },
112c4762a1bSJed Brown   {{M * H, 0, 0},    {P * H, M *H, M}, {0, P *H, 0},     {0, 0, 0},        {M * L, 0, 0},    {P * L, M *L, P}, {0, P *L, 0},     {0, 0, 0}       },
113c4762a1bSJed Brown   {{0, 0, 0},        {0, M *H, 0},     {P * H, P *H, M}, {M * H, 0, 0},    {0, 0, 0},        {0, M *L, 0},     {P * L, P *L, P}, {M * L, 0, 0}   },
114c4762a1bSJed Brown   {{0, M *H, 0},     {0, 0, 0},        {P * H, 0, 0},    {M * H, P *H, M}, {0, M *L, 0},     {0, 0, 0},        {P * L, 0, 0},    {M * L, P *L, P}},
115c4762a1bSJed Brown   {{M * L, M *L, M}, {P * L, 0, 0},    {0, 0, 0},        {0, P *L, 0},     {M * H, M *H, P}, {P * H, 0, 0},    {0, 0, 0},        {0, P *H, 0}    },
116c4762a1bSJed Brown   {{M * L, 0, 0},    {P * L, M *L, M}, {0, P *L, 0},     {0, 0, 0},        {M * H, 0, 0},    {P * H, M *H, P}, {0, P *H, 0},     {0, 0, 0}       },
117c4762a1bSJed Brown   {{0, 0, 0},        {0, M *L, 0},     {P * L, P *L, M}, {M * L, 0, 0},    {0, 0, 0},        {0, M *H, 0},     {P * H, P *H, P}, {M * H, 0, 0}   },
1189371c9d4SSatish Balay   {{0, M *L, 0},     {0, 0, 0},        {P * L, 0, 0},    {M * L, P *L, M}, {0, M *H, 0},     {0, 0, 0},        {P * H, 0, 0},    {M * H, P *H, P}}
1199371c9d4SSatish Balay };
120c4762a1bSJed Brown /* Stanndard Gauss */
1219371c9d4SSatish Balay static const PetscReal HexQInterp_Gauss[8][8] = {
1229371c9d4SSatish Balay   {H * H * H, L * H * H, L * L * H, H * L * H, H * H * L, L * H * L, L * L * L, H * L * L},
123c4762a1bSJed Brown   {L * H * H, H * H * H, H * L * H, L * L * H, L * H * L, H * H * L, H * L * L, L * L * L},
124c4762a1bSJed Brown   {L * L * H, H * L * H, H * H * H, L * H * H, L * L * L, H * L * L, H * H * L, L * H * L},
125c4762a1bSJed Brown   {H * L * H, L * L * H, L * H * H, H * H * H, H * L * L, L * L * L, L * H * L, H * H * L},
126c4762a1bSJed Brown   {H * H * L, L * H * L, L * L * L, H * L * L, H * H * H, L * H * H, L * L * H, H * L * H},
127c4762a1bSJed Brown   {L * H * L, H * H * L, H * L * L, L * L * L, L * H * H, H * H * H, H * L * H, L * L * H},
128c4762a1bSJed Brown   {L * L * L, H * L * L, H * H * L, L * H * L, L * L * H, H * L * H, H * H * H, L * H * H},
1299371c9d4SSatish Balay   {H * L * L, L * L * L, L * H * L, H * H * L, H * L * H, L * L * H, L * H * H, H * H * H}
1309371c9d4SSatish Balay };
131c4762a1bSJed Brown static const PetscReal HexQDeriv_Gauss[8][8][3] = {
132c4762a1bSJed Brown   {{M * H * H, H * M * H, H * H * M}, {P * H * H, L * M * H, L * H * M}, {P * L * H, L * P * H, L * L * M}, {M * L * H, H * P * H, H * L * M}, {M * H * L, H * M * L, H * H * P}, {P * H * L, L * M * L, L * H * P}, {P * L * L, L * P * L, L * L * P}, {M * L * L, H * P * L, H * L * P}},
133c4762a1bSJed Brown   {{M * H * H, L * M * H, L * H * M}, {P * H * H, H * M * H, H * H * M}, {P * L * H, H * P * H, H * L * M}, {M * L * H, L * P * H, L * L * M}, {M * H * L, L * M * L, L * H * P}, {P * H * L, H * M * L, H * H * P}, {P * L * L, H * P * L, H * L * P}, {M * L * L, L * P * L, L * L * P}},
134c4762a1bSJed Brown   {{M * L * H, L * M * H, L * L * M}, {P * L * H, H * M * H, H * L * M}, {P * H * H, H * P * H, H * H * M}, {M * H * H, L * P * H, L * H * M}, {M * L * L, L * M * L, L * L * P}, {P * L * L, H * M * L, H * L * P}, {P * H * L, H * P * L, H * H * P}, {M * H * L, L * P * L, L * H * P}},
135c4762a1bSJed Brown   {{M * L * H, H * M * H, H * L * M}, {P * L * H, L * M * H, L * L * M}, {P * H * H, L * P * H, L * H * M}, {M * H * H, H * P * H, H * H * M}, {M * L * L, H * M * L, H * L * P}, {P * L * L, L * M * L, L * L * P}, {P * H * L, L * P * L, L * H * P}, {M * H * L, H * P * L, H * H * P}},
136c4762a1bSJed Brown   {{M * H * L, H * M * L, H * H * M}, {P * H * L, L * M * L, L * H * M}, {P * L * L, L * P * L, L * L * M}, {M * L * L, H * P * L, H * L * M}, {M * H * H, H * M * H, H * H * P}, {P * H * H, L * M * H, L * H * P}, {P * L * H, L * P * H, L * L * P}, {M * L * H, H * P * H, H * L * P}},
137c4762a1bSJed Brown   {{M * H * L, L * M * L, L * H * M}, {P * H * L, H * M * L, H * H * M}, {P * L * L, H * P * L, H * L * M}, {M * L * L, L * P * L, L * L * M}, {M * H * H, L * M * H, L * H * P}, {P * H * H, H * M * H, H * H * P}, {P * L * H, H * P * H, H * L * P}, {M * L * H, L * P * H, L * L * P}},
138c4762a1bSJed Brown   {{M * L * L, L * M * L, L * L * M}, {P * L * L, H * M * L, H * L * M}, {P * H * L, H * P * L, H * H * M}, {M * H * L, L * P * L, L * H * M}, {M * L * H, L * M * H, L * L * P}, {P * L * H, H * M * H, H * L * P}, {P * H * H, H * P * H, H * H * P}, {M * H * H, L * P * H, L * H * P}},
1399371c9d4SSatish Balay   {{M * L * L, H * M * L, H * L * M}, {P * L * L, L * M * L, L * L * M}, {P * H * L, L * P * L, L * H * M}, {M * H * L, H * P * L, H * H * M}, {M * L * H, H * M * H, H * L * P}, {P * L * H, L * M * H, L * L * P}, {P * H * H, L * P * H, L * H * P}, {M * H * H, H * P * H, H * H * P}}
1409371c9d4SSatish Balay };
141c4762a1bSJed Brown static const PetscReal (*HexQInterp)[8], (*HexQDeriv)[8][3];
142c4762a1bSJed Brown /* Standard 2x2 Gauss quadrature for the bottom layer. */
1439371c9d4SSatish Balay static const PetscReal QuadQInterp[4][4] = {
1449371c9d4SSatish Balay   {H * H, L *H, L *L, H *L},
145c4762a1bSJed Brown   {L * H, H *H, H *L, L *L},
146c4762a1bSJed Brown   {L * L, H *L, H *H, L *H},
1479371c9d4SSatish Balay   {H * L, L *L, L *H, H *H}
1489371c9d4SSatish Balay };
149c4762a1bSJed Brown static const PetscReal QuadQDeriv[4][4][2] = {
150c4762a1bSJed Brown   {{M * H, M *H}, {P * H, M *L}, {P * L, P *L}, {M * L, P *H}},
151c4762a1bSJed Brown   {{M * H, M *L}, {P * H, M *H}, {P * L, P *H}, {M * L, P *L}},
152c4762a1bSJed Brown   {{M * L, M *L}, {P * L, M *H}, {P * H, P *H}, {M * H, P *L}},
1539371c9d4SSatish Balay   {{M * L, M *H}, {P * L, M *L}, {P * H, P *L}, {M * H, P *H}}
1549371c9d4SSatish Balay };
155c4762a1bSJed Brown #undef G
156c4762a1bSJed Brown #undef H
157c4762a1bSJed Brown #undef L
158c4762a1bSJed Brown #undef M
159c4762a1bSJed Brown #undef P
160c4762a1bSJed Brown 
1619371c9d4SSatish Balay #define HexExtract(x, i, j, k, n) \
1629371c9d4SSatish Balay   do { \
163c4762a1bSJed Brown     (n)[0] = (x)[i][j][k]; \
164c4762a1bSJed Brown     (n)[1] = (x)[i + 1][j][k]; \
165c4762a1bSJed Brown     (n)[2] = (x)[i + 1][j + 1][k]; \
166c4762a1bSJed Brown     (n)[3] = (x)[i][j + 1][k]; \
167c4762a1bSJed Brown     (n)[4] = (x)[i][j][k + 1]; \
168c4762a1bSJed Brown     (n)[5] = (x)[i + 1][j][k + 1]; \
169c4762a1bSJed Brown     (n)[6] = (x)[i + 1][j + 1][k + 1]; \
170c4762a1bSJed Brown     (n)[7] = (x)[i][j + 1][k + 1]; \
171c4762a1bSJed Brown   } while (0)
172c4762a1bSJed Brown 
1739371c9d4SSatish Balay #define HexExtractRef(x, i, j, k, n) \
1749371c9d4SSatish Balay   do { \
175c4762a1bSJed Brown     (n)[0] = &(x)[i][j][k]; \
176c4762a1bSJed Brown     (n)[1] = &(x)[i + 1][j][k]; \
177c4762a1bSJed Brown     (n)[2] = &(x)[i + 1][j + 1][k]; \
178c4762a1bSJed Brown     (n)[3] = &(x)[i][j + 1][k]; \
179c4762a1bSJed Brown     (n)[4] = &(x)[i][j][k + 1]; \
180c4762a1bSJed Brown     (n)[5] = &(x)[i + 1][j][k + 1]; \
181c4762a1bSJed Brown     (n)[6] = &(x)[i + 1][j + 1][k + 1]; \
182c4762a1bSJed Brown     (n)[7] = &(x)[i][j + 1][k + 1]; \
183c4762a1bSJed Brown   } while (0)
184c4762a1bSJed Brown 
1859371c9d4SSatish Balay #define QuadExtract(x, i, j, n) \
1869371c9d4SSatish Balay   do { \
187c4762a1bSJed Brown     (n)[0] = (x)[i][j]; \
188c4762a1bSJed Brown     (n)[1] = (x)[i + 1][j]; \
189c4762a1bSJed Brown     (n)[2] = (x)[i + 1][j + 1]; \
190c4762a1bSJed Brown     (n)[3] = (x)[i][j + 1]; \
191c4762a1bSJed Brown   } while (0)
192c4762a1bSJed Brown 
HexGrad(const PetscReal dphi[][3],const PetscReal zn[],PetscReal dz[])193d71ae5a4SJacob Faibussowitsch static void HexGrad(const PetscReal dphi[][3], const PetscReal zn[], PetscReal dz[])
194d71ae5a4SJacob Faibussowitsch {
195c4762a1bSJed Brown   PetscInt i;
196c4762a1bSJed Brown   dz[0] = dz[1] = dz[2] = 0;
197c4762a1bSJed Brown   for (i = 0; i < 8; i++) {
198c4762a1bSJed Brown     dz[0] += dphi[i][0] * zn[i];
199c4762a1bSJed Brown     dz[1] += dphi[i][1] * zn[i];
200c4762a1bSJed Brown     dz[2] += dphi[i][2] * zn[i];
201c4762a1bSJed Brown   }
202c4762a1bSJed Brown }
203c4762a1bSJed Brown 
HexComputeGeometry(PetscInt q,PetscReal hx,PetscReal hy,const PetscReal dz[PETSC_RESTRICT],PetscReal phi[PETSC_RESTRICT],PetscReal dphi[PETSC_RESTRICT][3],PetscReal * PETSC_RESTRICT jw)204d71ae5a4SJacob Faibussowitsch static void HexComputeGeometry(PetscInt q, PetscReal hx, PetscReal hy, const PetscReal dz[PETSC_RESTRICT], PetscReal phi[PETSC_RESTRICT], PetscReal dphi[PETSC_RESTRICT][3], PetscReal *PETSC_RESTRICT jw)
205d71ae5a4SJacob Faibussowitsch {
2069371c9d4SSatish Balay   const PetscReal jac[3][3] = {
2079371c9d4SSatish Balay     {hx / 2, 0,      0    },
2089371c9d4SSatish Balay     {0,      hy / 2, 0    },
2099371c9d4SSatish Balay     {dz[0],  dz[1],  dz[2]}
2109371c9d4SSatish Balay   };
2119371c9d4SSatish Balay   const PetscReal ijac[3][3] = {
2129371c9d4SSatish Balay     {1 / jac[0][0],                        0,                                    0            },
2139371c9d4SSatish Balay     {0,                                    1 / jac[1][1],                        0            },
2149371c9d4SSatish Balay     {-jac[2][0] / (jac[0][0] * jac[2][2]), -jac[2][1] / (jac[1][1] * jac[2][2]), 1 / jac[2][2]}
2159371c9d4SSatish Balay   };
216c4762a1bSJed Brown   const PetscReal jdet = jac[0][0] * jac[1][1] * jac[2][2];
217c4762a1bSJed Brown   PetscInt        i;
218c4762a1bSJed Brown 
219c4762a1bSJed Brown   for (i = 0; i < 8; i++) {
220c4762a1bSJed Brown     const PetscReal *dphir = HexQDeriv[q][i];
221c4762a1bSJed Brown     phi[i]                 = HexQInterp[q][i];
222c4762a1bSJed Brown     dphi[i][0]             = dphir[0] * ijac[0][0] + dphir[1] * ijac[1][0] + dphir[2] * ijac[2][0];
223c4762a1bSJed Brown     dphi[i][1]             = dphir[0] * ijac[0][1] + dphir[1] * ijac[1][1] + dphir[2] * ijac[2][1];
224c4762a1bSJed Brown     dphi[i][2]             = dphir[0] * ijac[0][2] + dphir[1] * ijac[1][2] + dphir[2] * ijac[2][2];
225c4762a1bSJed Brown   }
226c4762a1bSJed Brown   *jw = 1.0 * jdet;
227c4762a1bSJed Brown }
228c4762a1bSJed Brown 
229c4762a1bSJed Brown typedef struct _p_THI   *THI;
230c4762a1bSJed Brown typedef struct _n_Units *Units;
231c4762a1bSJed Brown 
232c4762a1bSJed Brown typedef struct {
233c4762a1bSJed Brown   PetscScalar u, v;
234c4762a1bSJed Brown } Node;
235c4762a1bSJed Brown 
236c4762a1bSJed Brown typedef struct {
237c4762a1bSJed Brown   PetscScalar b;     /* bed */
238c4762a1bSJed Brown   PetscScalar h;     /* thickness */
239c4762a1bSJed Brown   PetscScalar beta2; /* friction */
240c4762a1bSJed Brown } PrmNode;
241c4762a1bSJed Brown 
242c4762a1bSJed Brown typedef struct {
243c4762a1bSJed Brown   PetscReal min, max, cmin, cmax;
244c4762a1bSJed Brown } PRange;
245c4762a1bSJed Brown 
2469371c9d4SSatish Balay typedef enum {
2479371c9d4SSatish Balay   THIASSEMBLY_TRIDIAGONAL,
2489371c9d4SSatish Balay   THIASSEMBLY_FULL
2499371c9d4SSatish Balay } THIAssemblyMode;
250c4762a1bSJed Brown 
251c4762a1bSJed Brown struct _p_THI {
252c4762a1bSJed Brown   PETSCHEADER(int);
253c4762a1bSJed Brown   void (*initialize)(THI, PetscReal x, PetscReal y, PrmNode *p);
254c4762a1bSJed Brown   PetscInt  zlevels;
255c4762a1bSJed Brown   PetscReal Lx, Ly, Lz; /* Model domain */
256c4762a1bSJed Brown   PetscReal alpha;      /* Bed angle */
257c4762a1bSJed Brown   Units     units;
258c4762a1bSJed Brown   PetscReal dirichlet_scale;
259c4762a1bSJed Brown   PetscReal ssa_friction_scale;
260c4762a1bSJed Brown   PRange    eta;
261c4762a1bSJed Brown   PRange    beta2;
262c4762a1bSJed Brown   struct {
263c4762a1bSJed Brown     PetscReal Bd2, eps, exponent;
264c4762a1bSJed Brown   } viscosity;
265c4762a1bSJed Brown   struct {
266c4762a1bSJed Brown     PetscReal irefgam, eps2, exponent, refvel, epsvel;
267c4762a1bSJed Brown   } friction;
268c4762a1bSJed Brown   PetscReal rhog;
269c4762a1bSJed Brown   PetscBool no_slip;
270c4762a1bSJed Brown   PetscBool tridiagonal;
271c4762a1bSJed Brown   PetscBool coarse2d;
272c4762a1bSJed Brown   PetscBool verbose;
273c4762a1bSJed Brown   MatType   mattype;
274c4762a1bSJed Brown };
275c4762a1bSJed Brown 
276c4762a1bSJed Brown struct _n_Units {
277c4762a1bSJed Brown   /* fundamental */
278c4762a1bSJed Brown   PetscReal meter;
279c4762a1bSJed Brown   PetscReal kilogram;
280c4762a1bSJed Brown   PetscReal second;
281c4762a1bSJed Brown   /* derived */
282c4762a1bSJed Brown   PetscReal Pascal;
283c4762a1bSJed Brown   PetscReal year;
284c4762a1bSJed Brown };
285c4762a1bSJed Brown 
286c4762a1bSJed Brown static PetscErrorCode THIJacobianLocal_3D_Full(DMDALocalInfo *, Node ***, Mat, Mat, THI);
287c4762a1bSJed Brown static PetscErrorCode THIJacobianLocal_3D_Tridiagonal(DMDALocalInfo *, Node ***, Mat, Mat, THI);
288c4762a1bSJed Brown static PetscErrorCode THIJacobianLocal_2D(DMDALocalInfo *, Node **, Mat, Mat, THI);
289c4762a1bSJed Brown 
PrmHexGetZ(const PrmNode pn[],PetscInt k,PetscInt zm,PetscReal zn[])290d71ae5a4SJacob Faibussowitsch static void PrmHexGetZ(const PrmNode pn[], PetscInt k, PetscInt zm, PetscReal zn[])
291d71ae5a4SJacob Faibussowitsch {
2929371c9d4SSatish Balay   const PetscScalar zm1 = zm - 1, znl[8] = {pn[0].b + pn[0].h * (PetscScalar)k / zm1,       pn[1].b + pn[1].h * (PetscScalar)k / zm1,       pn[2].b + pn[2].h * (PetscScalar)k / zm1,       pn[3].b + pn[3].h * (PetscScalar)k / zm1,
2939371c9d4SSatish Balay                                             pn[0].b + pn[0].h * (PetscScalar)(k + 1) / zm1, pn[1].b + pn[1].h * (PetscScalar)(k + 1) / zm1, pn[2].b + pn[2].h * (PetscScalar)(k + 1) / zm1, pn[3].b + pn[3].h * (PetscScalar)(k + 1) / zm1};
294c4762a1bSJed Brown   PetscInt          i;
295c4762a1bSJed Brown   for (i = 0; i < 8; i++) zn[i] = PetscRealPart(znl[i]);
296c4762a1bSJed Brown }
297c4762a1bSJed Brown 
298c4762a1bSJed Brown /* Tests A and C are from the ISMIP-HOM paper (Pattyn et al. 2008) */
THIInitialize_HOM_A(THI thi,PetscReal x,PetscReal y,PrmNode * p)299d71ae5a4SJacob Faibussowitsch static void THIInitialize_HOM_A(THI thi, PetscReal x, PetscReal y, PrmNode *p)
300d71ae5a4SJacob Faibussowitsch {
301c4762a1bSJed Brown   Units     units = thi->units;
302c4762a1bSJed Brown   PetscReal s     = -x * PetscSinReal(thi->alpha);
303c4762a1bSJed Brown 
304c4762a1bSJed Brown   p->b     = s - 1000 * units->meter + 500 * units->meter * PetscSinReal(x * 2 * PETSC_PI / thi->Lx) * PetscSinReal(y * 2 * PETSC_PI / thi->Ly);
305c4762a1bSJed Brown   p->h     = s - p->b;
306c4762a1bSJed Brown   p->beta2 = 1e30;
307c4762a1bSJed Brown }
308c4762a1bSJed Brown 
THIInitialize_HOM_C(THI thi,PetscReal x,PetscReal y,PrmNode * p)309d71ae5a4SJacob Faibussowitsch static void THIInitialize_HOM_C(THI thi, PetscReal x, PetscReal y, PrmNode *p)
310d71ae5a4SJacob Faibussowitsch {
311c4762a1bSJed Brown   Units     units = thi->units;
312c4762a1bSJed Brown   PetscReal s     = -x * PetscSinReal(thi->alpha);
313c4762a1bSJed Brown 
314c4762a1bSJed Brown   p->b = s - 1000 * units->meter;
315c4762a1bSJed Brown   p->h = s - p->b;
316c4762a1bSJed Brown   /* tau_b = beta2 v   is a stress (Pa) */
317c4762a1bSJed Brown   p->beta2 = 1000 * (1 + PetscSinReal(x * 2 * PETSC_PI / thi->Lx) * PetscSinReal(y * 2 * PETSC_PI / thi->Ly)) * units->Pascal * units->year / units->meter;
318c4762a1bSJed Brown }
319c4762a1bSJed Brown 
320c4762a1bSJed Brown /* These are just toys */
321c4762a1bSJed Brown 
322c4762a1bSJed Brown /* Same bed as test A, free slip everywhere except for a discontinuous jump to a circular sticky region in the middle. */
THIInitialize_HOM_X(THI thi,PetscReal xx,PetscReal yy,PrmNode * p)323d71ae5a4SJacob Faibussowitsch static void THIInitialize_HOM_X(THI thi, PetscReal xx, PetscReal yy, PrmNode *p)
324d71ae5a4SJacob Faibussowitsch {
325c4762a1bSJed Brown   Units     units = thi->units;
326c4762a1bSJed Brown   PetscReal x = xx * 2 * PETSC_PI / thi->Lx - PETSC_PI, y = yy * 2 * PETSC_PI / thi->Ly - PETSC_PI; /* [-pi,pi] */
327c4762a1bSJed Brown   PetscReal r = PetscSqrtReal(x * x + y * y), s = -x * PetscSinReal(thi->alpha);
328c4762a1bSJed Brown   p->b     = s - 1000 * units->meter + 500 * units->meter * PetscSinReal(x + PETSC_PI) * PetscSinReal(y + PETSC_PI);
329c4762a1bSJed Brown   p->h     = s - p->b;
330c4762a1bSJed Brown   p->beta2 = 1000 * (r < 1 ? 2 : 0) * units->Pascal * units->year / units->meter;
331c4762a1bSJed Brown }
332c4762a1bSJed Brown 
333c4762a1bSJed Brown /* Like Z, but with 200 meter cliffs */
THIInitialize_HOM_Y(THI thi,PetscReal xx,PetscReal yy,PrmNode * p)334d71ae5a4SJacob Faibussowitsch static void THIInitialize_HOM_Y(THI thi, PetscReal xx, PetscReal yy, PrmNode *p)
335d71ae5a4SJacob Faibussowitsch {
336c4762a1bSJed Brown   Units     units = thi->units;
337c4762a1bSJed Brown   PetscReal x = xx * 2 * PETSC_PI / thi->Lx - PETSC_PI, y = yy * 2 * PETSC_PI / thi->Ly - PETSC_PI; /* [-pi,pi] */
338c4762a1bSJed Brown   PetscReal r = PetscSqrtReal(x * x + y * y), s = -x * PetscSinReal(thi->alpha);
339c4762a1bSJed Brown 
340c4762a1bSJed Brown   p->b = s - 1000 * units->meter + 500 * units->meter * PetscSinReal(x + PETSC_PI) * PetscSinReal(y + PETSC_PI);
341c4762a1bSJed Brown   if (PetscRealPart(p->b) > -700 * units->meter) p->b += 200 * units->meter;
342c4762a1bSJed Brown   p->h     = s - p->b;
343c4762a1bSJed Brown   p->beta2 = 1000 * (1. + PetscSinReal(PetscSqrtReal(16 * r)) / PetscSqrtReal(1e-2 + 16 * r) * PetscCosReal(x * 3 / 2) * PetscCosReal(y * 3 / 2)) * units->Pascal * units->year / units->meter;
344c4762a1bSJed Brown }
345c4762a1bSJed Brown 
346c4762a1bSJed Brown /* Same bed as A, smoothly varying slipperiness, similar to MATLAB's "sombrero" (uncorrelated with bathymetry) */
THIInitialize_HOM_Z(THI thi,PetscReal xx,PetscReal yy,PrmNode * p)347d71ae5a4SJacob Faibussowitsch static void THIInitialize_HOM_Z(THI thi, PetscReal xx, PetscReal yy, PrmNode *p)
348d71ae5a4SJacob Faibussowitsch {
349c4762a1bSJed Brown   Units     units = thi->units;
350c4762a1bSJed Brown   PetscReal x = xx * 2 * PETSC_PI / thi->Lx - PETSC_PI, y = yy * 2 * PETSC_PI / thi->Ly - PETSC_PI; /* [-pi,pi] */
351c4762a1bSJed Brown   PetscReal r = PetscSqrtReal(x * x + y * y), s = -x * PetscSinReal(thi->alpha);
352c4762a1bSJed Brown 
353c4762a1bSJed Brown   p->b     = s - 1000 * units->meter + 500 * units->meter * PetscSinReal(x + PETSC_PI) * PetscSinReal(y + PETSC_PI);
354c4762a1bSJed Brown   p->h     = s - p->b;
355c4762a1bSJed Brown   p->beta2 = 1000 * (1. + PetscSinReal(PetscSqrtReal(16 * r)) / PetscSqrtReal(1e-2 + 16 * r) * PetscCosReal(x * 3 / 2) * PetscCosReal(y * 3 / 2)) * units->Pascal * units->year / units->meter;
356c4762a1bSJed Brown }
357c4762a1bSJed Brown 
THIFriction(THI thi,PetscReal rbeta2,PetscReal gam,PetscReal * beta2,PetscReal * dbeta2)358d71ae5a4SJacob Faibussowitsch static void THIFriction(THI thi, PetscReal rbeta2, PetscReal gam, PetscReal *beta2, PetscReal *dbeta2)
359d71ae5a4SJacob Faibussowitsch {
360c4762a1bSJed Brown   if (thi->friction.irefgam == 0) {
361c4762a1bSJed Brown     Units units           = thi->units;
362c4762a1bSJed Brown     thi->friction.irefgam = 1. / (0.5 * PetscSqr(thi->friction.refvel * units->meter / units->year));
363c4762a1bSJed Brown     thi->friction.eps2    = 0.5 * PetscSqr(thi->friction.epsvel * units->meter / units->year) * thi->friction.irefgam;
364c4762a1bSJed Brown   }
365c4762a1bSJed Brown   if (thi->friction.exponent == 0) {
366c4762a1bSJed Brown     *beta2  = rbeta2;
367c4762a1bSJed Brown     *dbeta2 = 0;
368c4762a1bSJed Brown   } else {
369c4762a1bSJed Brown     *beta2  = rbeta2 * PetscPowReal(thi->friction.eps2 + gam * thi->friction.irefgam, thi->friction.exponent);
370c4762a1bSJed Brown     *dbeta2 = thi->friction.exponent * *beta2 / (thi->friction.eps2 + gam * thi->friction.irefgam) * thi->friction.irefgam;
371c4762a1bSJed Brown   }
372c4762a1bSJed Brown }
373c4762a1bSJed Brown 
THIViscosity(THI thi,PetscReal gam,PetscReal * eta,PetscReal * deta)374d71ae5a4SJacob Faibussowitsch static void THIViscosity(THI thi, PetscReal gam, PetscReal *eta, PetscReal *deta)
375d71ae5a4SJacob Faibussowitsch {
376c4762a1bSJed Brown   PetscReal Bd2, eps, exponent;
377c4762a1bSJed Brown   if (thi->viscosity.Bd2 == 0) {
378c4762a1bSJed Brown     Units           units   = thi->units;
3799371c9d4SSatish Balay     const PetscReal n       = 3.,                                                     /* Glen exponent */
380c4762a1bSJed Brown       p                     = 1. + 1. / n,                                            /* for Stokes */
381c4762a1bSJed Brown       A                     = 1.e-16 * PetscPowReal(units->Pascal, -n) / units->year, /* softness parameter (Pa^{-n}/s) */
382c4762a1bSJed Brown       B                     = PetscPowReal(A, -1. / n);                               /* hardness parameter */
383c4762a1bSJed Brown     thi->viscosity.Bd2      = B / 2;
384c4762a1bSJed Brown     thi->viscosity.exponent = (p - 2) / 2;
385c4762a1bSJed Brown     thi->viscosity.eps      = 0.5 * PetscSqr(1e-5 / units->year);
386c4762a1bSJed Brown   }
387c4762a1bSJed Brown   Bd2      = thi->viscosity.Bd2;
388c4762a1bSJed Brown   exponent = thi->viscosity.exponent;
389c4762a1bSJed Brown   eps      = thi->viscosity.eps;
390c4762a1bSJed Brown   *eta     = Bd2 * PetscPowReal(eps + gam, exponent);
391c4762a1bSJed Brown   *deta    = exponent * (*eta) / (eps + gam);
392c4762a1bSJed Brown }
393c4762a1bSJed Brown 
RangeUpdate(PetscReal * min,PetscReal * max,PetscReal x)394d71ae5a4SJacob Faibussowitsch static void RangeUpdate(PetscReal *min, PetscReal *max, PetscReal x)
395d71ae5a4SJacob Faibussowitsch {
396c4762a1bSJed Brown   if (x < *min) *min = x;
397c4762a1bSJed Brown   if (x > *max) *max = x;
398c4762a1bSJed Brown }
399c4762a1bSJed Brown 
PRangeClear(PRange * p)400d71ae5a4SJacob Faibussowitsch static void PRangeClear(PRange *p)
401d71ae5a4SJacob Faibussowitsch {
402c4762a1bSJed Brown   p->cmin = p->min = 1e100;
403c4762a1bSJed Brown   p->cmax = p->max = -1e100;
404c4762a1bSJed Brown }
405c4762a1bSJed Brown 
PRangeMinMax(PRange * p,PetscReal min,PetscReal max)406d71ae5a4SJacob Faibussowitsch static PetscErrorCode PRangeMinMax(PRange *p, PetscReal min, PetscReal max)
407d71ae5a4SJacob Faibussowitsch {
408c4762a1bSJed Brown   PetscFunctionBeginUser;
409c4762a1bSJed Brown   p->cmin = min;
410c4762a1bSJed Brown   p->cmax = max;
411c4762a1bSJed Brown   if (min < p->min) p->min = min;
412c4762a1bSJed Brown   if (max > p->max) p->max = max;
4133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
414c4762a1bSJed Brown }
415c4762a1bSJed Brown 
THIDestroy(THI * thi)416d71ae5a4SJacob Faibussowitsch static PetscErrorCode THIDestroy(THI *thi)
417d71ae5a4SJacob Faibussowitsch {
418c4762a1bSJed Brown   PetscFunctionBeginUser;
4193ba16761SJacob Faibussowitsch   if (!*thi) PetscFunctionReturn(PETSC_SUCCESS);
420f4f49eeaSPierre Jolivet   if (--((PetscObject)*thi)->refct > 0) {
4219371c9d4SSatish Balay     *thi = 0;
4223ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
4239371c9d4SSatish Balay   }
4249566063dSJacob Faibussowitsch   PetscCall(PetscFree((*thi)->units));
4259566063dSJacob Faibussowitsch   PetscCall(PetscFree((*thi)->mattype));
4269566063dSJacob Faibussowitsch   PetscCall(PetscHeaderDestroy(thi));
4273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
428c4762a1bSJed Brown }
429c4762a1bSJed Brown 
THICreate(MPI_Comm comm,THI * inthi)430d71ae5a4SJacob Faibussowitsch static PetscErrorCode THICreate(MPI_Comm comm, THI *inthi)
431d71ae5a4SJacob Faibussowitsch {
432c4762a1bSJed Brown   static PetscBool registered = PETSC_FALSE;
433c4762a1bSJed Brown   THI              thi;
434c4762a1bSJed Brown   Units            units;
435c4762a1bSJed Brown 
436c4762a1bSJed Brown   PetscFunctionBeginUser;
437c4762a1bSJed Brown   *inthi = 0;
438c4762a1bSJed Brown   if (!registered) {
4399566063dSJacob Faibussowitsch     PetscCall(PetscClassIdRegister("Toy Hydrostatic Ice", &THI_CLASSID));
440c4762a1bSJed Brown     registered = PETSC_TRUE;
441c4762a1bSJed Brown   }
4429566063dSJacob Faibussowitsch   PetscCall(PetscHeaderCreate(thi, THI_CLASSID, "THI", "Toy Hydrostatic Ice", "", comm, THIDestroy, 0));
443c4762a1bSJed Brown 
4449566063dSJacob Faibussowitsch   PetscCall(PetscNew(&thi->units));
445c4762a1bSJed Brown   units           = thi->units;
446c4762a1bSJed Brown   units->meter    = 1e-2;
447c4762a1bSJed Brown   units->second   = 1e-7;
448c4762a1bSJed Brown   units->kilogram = 1e-12;
449c4762a1bSJed Brown 
450d0609cedSBarry Smith   PetscOptionsBegin(comm, NULL, "Scaled units options", "");
451c4762a1bSJed Brown   {
4529566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-units_meter", "1 meter in scaled length units", "", units->meter, &units->meter, NULL));
4539566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-units_second", "1 second in scaled time units", "", units->second, &units->second, NULL));
4549566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-units_kilogram", "1 kilogram in scaled mass units", "", units->kilogram, &units->kilogram, NULL));
455c4762a1bSJed Brown   }
456d0609cedSBarry Smith   PetscOptionsEnd();
457c4762a1bSJed Brown   units->Pascal = units->kilogram / (units->meter * PetscSqr(units->second));
458c4762a1bSJed Brown   units->year   = 31556926. * units->second; /* seconds per year */
459c4762a1bSJed Brown 
460c4762a1bSJed Brown   thi->Lx              = 10.e3;
461c4762a1bSJed Brown   thi->Ly              = 10.e3;
462c4762a1bSJed Brown   thi->Lz              = 1000;
463c4762a1bSJed Brown   thi->dirichlet_scale = 1;
464c4762a1bSJed Brown   thi->verbose         = PETSC_FALSE;
465c4762a1bSJed Brown 
466d0609cedSBarry Smith   PetscOptionsBegin(comm, NULL, "Toy Hydrostatic Ice options", "");
467c4762a1bSJed Brown   {
468c4762a1bSJed Brown     QuadratureType quad       = QUAD_GAUSS;
469c4762a1bSJed Brown     char           homexp[]   = "A";
470c4762a1bSJed Brown     char           mtype[256] = MATSBAIJ;
471c4762a1bSJed Brown     PetscReal      L, m = 1.0;
472c4762a1bSJed Brown     PetscBool      flg;
473c4762a1bSJed Brown     L = thi->Lx;
4749566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-thi_L", "Domain size (m)", "", L, &L, &flg));
475c4762a1bSJed Brown     if (flg) thi->Lx = thi->Ly = L;
4769566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-thi_Lx", "X Domain size (m)", "", thi->Lx, &thi->Lx, NULL));
4779566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-thi_Ly", "Y Domain size (m)", "", thi->Ly, &thi->Ly, NULL));
4789566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-thi_Lz", "Z Domain size (m)", "", thi->Lz, &thi->Lz, NULL));
4799566063dSJacob Faibussowitsch     PetscCall(PetscOptionsString("-thi_hom", "ISMIP-HOM experiment (A or C)", "", homexp, homexp, sizeof(homexp), NULL));
4806497c311SBarry Smith     switch (homexp[0] = (char)toupper(homexp[0])) {
481c4762a1bSJed Brown     case 'A':
482c4762a1bSJed Brown       thi->initialize = THIInitialize_HOM_A;
483c4762a1bSJed Brown       thi->no_slip    = PETSC_TRUE;
484c4762a1bSJed Brown       thi->alpha      = 0.5;
485c4762a1bSJed Brown       break;
486c4762a1bSJed Brown     case 'C':
487c4762a1bSJed Brown       thi->initialize = THIInitialize_HOM_C;
488c4762a1bSJed Brown       thi->no_slip    = PETSC_FALSE;
489c4762a1bSJed Brown       thi->alpha      = 0.1;
490c4762a1bSJed Brown       break;
491c4762a1bSJed Brown     case 'X':
492c4762a1bSJed Brown       thi->initialize = THIInitialize_HOM_X;
493c4762a1bSJed Brown       thi->no_slip    = PETSC_FALSE;
494c4762a1bSJed Brown       thi->alpha      = 0.3;
495c4762a1bSJed Brown       break;
496c4762a1bSJed Brown     case 'Y':
497c4762a1bSJed Brown       thi->initialize = THIInitialize_HOM_Y;
498c4762a1bSJed Brown       thi->no_slip    = PETSC_FALSE;
499c4762a1bSJed Brown       thi->alpha      = 0.5;
500c4762a1bSJed Brown       break;
501c4762a1bSJed Brown     case 'Z':
502c4762a1bSJed Brown       thi->initialize = THIInitialize_HOM_Z;
503c4762a1bSJed Brown       thi->no_slip    = PETSC_FALSE;
504c4762a1bSJed Brown       thi->alpha      = 0.5;
505c4762a1bSJed Brown       break;
506d71ae5a4SJacob Faibussowitsch     default:
507d71ae5a4SJacob Faibussowitsch       SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "HOM experiment '%c' not implemented", homexp[0]);
508c4762a1bSJed Brown     }
5099566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEnum("-thi_quadrature", "Quadrature to use for 3D elements", "", QuadratureTypes, (PetscEnum)quad, (PetscEnum *)&quad, NULL));
510c4762a1bSJed Brown     switch (quad) {
511c4762a1bSJed Brown     case QUAD_GAUSS:
512c4762a1bSJed Brown       HexQInterp = HexQInterp_Gauss;
513c4762a1bSJed Brown       HexQDeriv  = HexQDeriv_Gauss;
514c4762a1bSJed Brown       break;
515c4762a1bSJed Brown     case QUAD_LOBATTO:
516c4762a1bSJed Brown       HexQInterp = HexQInterp_Lobatto;
517c4762a1bSJed Brown       HexQDeriv  = HexQDeriv_Lobatto;
518c4762a1bSJed Brown       break;
519c4762a1bSJed Brown     }
5209566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-thi_alpha", "Bed angle (degrees)", "", thi->alpha, &thi->alpha, NULL));
521c4762a1bSJed Brown 
522c4762a1bSJed Brown     thi->friction.refvel = 100.;
523c4762a1bSJed Brown     thi->friction.epsvel = 1.;
524c4762a1bSJed Brown 
5259566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-thi_friction_refvel", "Reference velocity for sliding", "", thi->friction.refvel, &thi->friction.refvel, NULL));
5269566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-thi_friction_epsvel", "Regularization velocity for sliding", "", thi->friction.epsvel, &thi->friction.epsvel, NULL));
5279566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-thi_friction_m", "Friction exponent, 0=Coulomb, 1=Navier", "", m, &m, NULL));
528c4762a1bSJed Brown 
529c4762a1bSJed Brown     thi->friction.exponent = (m - 1) / 2;
530c4762a1bSJed Brown 
5319566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-thi_dirichlet_scale", "Scale Dirichlet boundary conditions by this factor", "", thi->dirichlet_scale, &thi->dirichlet_scale, NULL));
5329566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-thi_ssa_friction_scale", "Scale slip boundary conditions by this factor in SSA (2D) assembly", "", thi->ssa_friction_scale, &thi->ssa_friction_scale, NULL));
5339566063dSJacob Faibussowitsch     PetscCall(PetscOptionsBool("-thi_coarse2d", "Use a 2D coarse space corresponding to SSA", "", thi->coarse2d, &thi->coarse2d, NULL));
5349566063dSJacob Faibussowitsch     PetscCall(PetscOptionsBool("-thi_tridiagonal", "Assemble a tridiagonal system (column coupling only) on the finest level", "", thi->tridiagonal, &thi->tridiagonal, NULL));
5359566063dSJacob Faibussowitsch     PetscCall(PetscOptionsFList("-thi_mat_type", "Matrix type", "MatSetType", MatList, mtype, (char *)mtype, sizeof(mtype), NULL));
5369566063dSJacob Faibussowitsch     PetscCall(PetscStrallocpy(mtype, (char **)&thi->mattype));
5379566063dSJacob Faibussowitsch     PetscCall(PetscOptionsBool("-thi_verbose", "Enable verbose output (like matrix sizes and statistics)", "", thi->verbose, &thi->verbose, NULL));
538c4762a1bSJed Brown   }
539d0609cedSBarry Smith   PetscOptionsEnd();
540c4762a1bSJed Brown 
541c4762a1bSJed Brown   /* dimensionalize */
542c4762a1bSJed Brown   thi->Lx *= units->meter;
543c4762a1bSJed Brown   thi->Ly *= units->meter;
544c4762a1bSJed Brown   thi->Lz *= units->meter;
545c4762a1bSJed Brown   thi->alpha *= PETSC_PI / 180;
546c4762a1bSJed Brown 
547c4762a1bSJed Brown   PRangeClear(&thi->eta);
548c4762a1bSJed Brown   PRangeClear(&thi->beta2);
549c4762a1bSJed Brown 
550c4762a1bSJed Brown   {
5519371c9d4SSatish Balay     PetscReal u = 1000 * units->meter / (3e7 * units->second), gradu = u / (100 * units->meter), eta, deta, rho = 910 * units->kilogram / PetscPowReal(units->meter, 3), grav = 9.81 * units->meter / PetscSqr(units->second),
552c4762a1bSJed Brown               driving = rho * grav * PetscSinReal(thi->alpha) * 1000 * units->meter;
553c4762a1bSJed Brown     THIViscosity(thi, 0.5 * gradu * gradu, &eta, &deta);
554c4762a1bSJed Brown     thi->rhog = rho * grav;
555c4762a1bSJed Brown     if (thi->verbose) {
5569566063dSJacob Faibussowitsch       PetscCall(PetscPrintf(PetscObjectComm((PetscObject)thi), "Units: meter %8.2g  second %8.2g  kg %8.2g  Pa %8.2g\n", (double)units->meter, (double)units->second, (double)units->kilogram, (double)units->Pascal));
5579566063dSJacob Faibussowitsch       PetscCall(PetscPrintf(PetscObjectComm((PetscObject)thi), "Domain (%6.2g,%6.2g,%6.2g), pressure %8.2g, driving stress %8.2g\n", (double)thi->Lx, (double)thi->Ly, (double)thi->Lz, (double)(rho * grav * 1e3 * units->meter), (double)driving));
5589566063dSJacob Faibussowitsch       PetscCall(PetscPrintf(PetscObjectComm((PetscObject)thi), "Large velocity 1km/a %8.2g, velocity gradient %8.2g, eta %8.2g, stress %8.2g, ratio %8.2g\n", (double)u, (double)gradu, (double)eta, (double)(2 * eta * gradu), (double)(2 * eta * gradu / driving)));
559c4762a1bSJed Brown       THIViscosity(thi, 0.5 * PetscSqr(1e-3 * gradu), &eta, &deta);
5609566063dSJacob Faibussowitsch       PetscCall(PetscPrintf(PetscObjectComm((PetscObject)thi), "Small velocity 1m/a  %8.2g, velocity gradient %8.2g, eta %8.2g, stress %8.2g, ratio %8.2g\n", (double)(1e-3 * u), (double)(1e-3 * gradu), (double)eta, (double)(2 * eta * 1e-3 * gradu), (double)(2 * eta * 1e-3 * gradu / driving)));
561c4762a1bSJed Brown     }
562c4762a1bSJed Brown   }
563c4762a1bSJed Brown 
564c4762a1bSJed Brown   *inthi = thi;
5653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
566c4762a1bSJed Brown }
567c4762a1bSJed Brown 
THIInitializePrm(THI thi,DM da2prm,Vec prm)568d71ae5a4SJacob Faibussowitsch static PetscErrorCode THIInitializePrm(THI thi, DM da2prm, Vec prm)
569d71ae5a4SJacob Faibussowitsch {
570c4762a1bSJed Brown   PrmNode **p;
571c4762a1bSJed Brown   PetscInt  i, j, xs, xm, ys, ym, mx, my;
572c4762a1bSJed Brown 
573c4762a1bSJed Brown   PetscFunctionBeginUser;
5749566063dSJacob Faibussowitsch   PetscCall(DMDAGetGhostCorners(da2prm, &ys, &xs, 0, &ym, &xm, 0));
5759566063dSJacob Faibussowitsch   PetscCall(DMDAGetInfo(da2prm, 0, &my, &mx, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0));
5769566063dSJacob Faibussowitsch   PetscCall(DMDAVecGetArray(da2prm, prm, &p));
577c4762a1bSJed Brown   for (i = xs; i < xs + xm; i++) {
578c4762a1bSJed Brown     for (j = ys; j < ys + ym; j++) {
579c4762a1bSJed Brown       PetscReal xx = thi->Lx * i / mx, yy = thi->Ly * j / my;
580c4762a1bSJed Brown       thi->initialize(thi, xx, yy, &p[i][j]);
581c4762a1bSJed Brown     }
582c4762a1bSJed Brown   }
5839566063dSJacob Faibussowitsch   PetscCall(DMDAVecRestoreArray(da2prm, prm, &p));
5843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
585c4762a1bSJed Brown }
586c4762a1bSJed Brown 
THISetUpDM(THI thi,DM dm)587d71ae5a4SJacob Faibussowitsch static PetscErrorCode THISetUpDM(THI thi, DM dm)
588d71ae5a4SJacob Faibussowitsch {
589c4762a1bSJed Brown   PetscInt        refinelevel, coarsenlevel, level, dim, Mx, My, Mz, mx, my, s;
590c4762a1bSJed Brown   DMDAStencilType st;
591c4762a1bSJed Brown   DM              da2prm;
592c4762a1bSJed Brown   Vec             X;
593c4762a1bSJed Brown 
594c4762a1bSJed Brown   PetscFunctionBeginUser;
5959566063dSJacob Faibussowitsch   PetscCall(DMDAGetInfo(dm, &dim, &Mz, &My, &Mx, 0, &my, &mx, 0, &s, 0, 0, 0, &st));
59648a46eb9SPierre Jolivet   if (dim == 2) PetscCall(DMDAGetInfo(dm, &dim, &My, &Mx, 0, &my, &mx, 0, 0, &s, 0, 0, 0, &st));
5979566063dSJacob Faibussowitsch   PetscCall(DMGetRefineLevel(dm, &refinelevel));
5989566063dSJacob Faibussowitsch   PetscCall(DMGetCoarsenLevel(dm, &coarsenlevel));
599c4762a1bSJed Brown   level = refinelevel - coarsenlevel;
6009566063dSJacob Faibussowitsch   PetscCall(DMDACreate2d(PetscObjectComm((PetscObject)thi), DM_BOUNDARY_PERIODIC, DM_BOUNDARY_PERIODIC, st, My, Mx, my, mx, sizeof(PrmNode) / sizeof(PetscScalar), s, 0, 0, &da2prm));
6019566063dSJacob Faibussowitsch   PetscCall(DMSetUp(da2prm));
6029566063dSJacob Faibussowitsch   PetscCall(DMCreateLocalVector(da2prm, &X));
603c4762a1bSJed Brown   {
604c4762a1bSJed Brown     PetscReal Lx = thi->Lx / thi->units->meter, Ly = thi->Ly / thi->units->meter, Lz = thi->Lz / thi->units->meter;
605c4762a1bSJed Brown     if (dim == 2) {
60663a3b9bcSJacob Faibussowitsch       PetscCall(PetscPrintf(PetscObjectComm((PetscObject)thi), "Level %" PetscInt_FMT " domain size (m) %8.2g x %8.2g, num elements %" PetscInt_FMT " x %" PetscInt_FMT " (%" PetscInt_FMT "), size (m) %g x %g\n", level, (double)Lx, (double)Ly, Mx, My, Mx * My, (double)(Lx / Mx), (double)(Ly / My)));
607c4762a1bSJed Brown     } else {
60863a3b9bcSJacob Faibussowitsch       PetscCall(PetscPrintf(PetscObjectComm((PetscObject)thi), "Level %" PetscInt_FMT " domain size (m) %8.2g x %8.2g x %8.2g, num elements %" PetscInt_FMT " x %" PetscInt_FMT " x %" PetscInt_FMT " (%" PetscInt_FMT "), size (m) %g x %g x %g\n", level, (double)Lx, (double)Ly, (double)Lz, Mx, My, Mz, Mx * My * Mz, (double)(Lx / Mx), (double)(Ly / My), (double)(1000. / (Mz - 1))));
609c4762a1bSJed Brown     }
610c4762a1bSJed Brown   }
6119566063dSJacob Faibussowitsch   PetscCall(THIInitializePrm(thi, da2prm, X));
612c4762a1bSJed Brown   if (thi->tridiagonal) { /* Reset coarse Jacobian evaluation */
6138434afd1SBarry Smith     PetscCall(DMDASNESSetJacobianLocal(dm, (DMDASNESJacobianFn *)THIJacobianLocal_3D_Full, thi));
614c4762a1bSJed Brown   }
6158434afd1SBarry Smith   if (thi->coarse2d) PetscCall(DMDASNESSetJacobianLocal(dm, (DMDASNESJacobianFn *)THIJacobianLocal_2D, thi));
6169566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)dm, "DMDA2Prm", (PetscObject)da2prm));
6179566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)dm, "DMDA2Prm_Vec", (PetscObject)X));
6189566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&da2prm));
6199566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&X));
6203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
621c4762a1bSJed Brown }
622c4762a1bSJed Brown 
DMCoarsenHook_THI(DM dmf,DM dmc,PetscCtx ctx)6232a8381b2SBarry Smith static PetscErrorCode DMCoarsenHook_THI(DM dmf, DM dmc, PetscCtx ctx)
624d71ae5a4SJacob Faibussowitsch {
625c4762a1bSJed Brown   THI      thi = (THI)ctx;
626c4762a1bSJed Brown   PetscInt rlevel, clevel;
627c4762a1bSJed Brown 
628c4762a1bSJed Brown   PetscFunctionBeginUser;
6299566063dSJacob Faibussowitsch   PetscCall(THISetUpDM(thi, dmc));
6309566063dSJacob Faibussowitsch   PetscCall(DMGetRefineLevel(dmc, &rlevel));
6319566063dSJacob Faibussowitsch   PetscCall(DMGetCoarsenLevel(dmc, &clevel));
6329566063dSJacob Faibussowitsch   if (rlevel - clevel == 0) PetscCall(DMSetMatType(dmc, MATAIJ));
6339566063dSJacob Faibussowitsch   PetscCall(DMCoarsenHookAdd(dmc, DMCoarsenHook_THI, NULL, thi));
6343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
635c4762a1bSJed Brown }
636c4762a1bSJed Brown 
DMRefineHook_THI(DM dmc,DM dmf,PetscCtx ctx)6372a8381b2SBarry Smith static PetscErrorCode DMRefineHook_THI(DM dmc, DM dmf, PetscCtx ctx)
638d71ae5a4SJacob Faibussowitsch {
639c4762a1bSJed Brown   THI thi = (THI)ctx;
640c4762a1bSJed Brown 
641c4762a1bSJed Brown   PetscFunctionBeginUser;
6429566063dSJacob Faibussowitsch   PetscCall(THISetUpDM(thi, dmf));
6439566063dSJacob Faibussowitsch   PetscCall(DMSetMatType(dmf, thi->mattype));
6449566063dSJacob Faibussowitsch   PetscCall(DMRefineHookAdd(dmf, DMRefineHook_THI, NULL, thi));
645c4762a1bSJed Brown   /* With grid sequencing, a formerly-refined DM will later be coarsened by PCSetUp_MG */
6469566063dSJacob Faibussowitsch   PetscCall(DMCoarsenHookAdd(dmf, DMCoarsenHook_THI, NULL, thi));
6473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
648c4762a1bSJed Brown }
649c4762a1bSJed Brown 
THIDAGetPrm(DM da,PrmNode *** prm)650d71ae5a4SJacob Faibussowitsch static PetscErrorCode THIDAGetPrm(DM da, PrmNode ***prm)
651d71ae5a4SJacob Faibussowitsch {
652c4762a1bSJed Brown   DM  da2prm;
653c4762a1bSJed Brown   Vec X;
654c4762a1bSJed Brown 
655c4762a1bSJed Brown   PetscFunctionBeginUser;
6569566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)da, "DMDA2Prm", (PetscObject *)&da2prm));
65728b400f6SJacob Faibussowitsch   PetscCheck(da2prm, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "No DMDA2Prm composed with given DMDA");
6589566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)da, "DMDA2Prm_Vec", (PetscObject *)&X));
65928b400f6SJacob Faibussowitsch   PetscCheck(X, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "No DMDA2Prm_Vec composed with given DMDA");
6609566063dSJacob Faibussowitsch   PetscCall(DMDAVecGetArray(da2prm, X, prm));
6613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
662c4762a1bSJed Brown }
663c4762a1bSJed Brown 
THIDARestorePrm(DM da,PrmNode *** prm)664d71ae5a4SJacob Faibussowitsch static PetscErrorCode THIDARestorePrm(DM da, PrmNode ***prm)
665d71ae5a4SJacob Faibussowitsch {
666c4762a1bSJed Brown   DM  da2prm;
667c4762a1bSJed Brown   Vec X;
668c4762a1bSJed Brown 
669c4762a1bSJed Brown   PetscFunctionBeginUser;
6709566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)da, "DMDA2Prm", (PetscObject *)&da2prm));
67128b400f6SJacob Faibussowitsch   PetscCheck(da2prm, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "No DMDA2Prm composed with given DMDA");
6729566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)da, "DMDA2Prm_Vec", (PetscObject *)&X));
67328b400f6SJacob Faibussowitsch   PetscCheck(X, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "No DMDA2Prm_Vec composed with given DMDA");
6749566063dSJacob Faibussowitsch   PetscCall(DMDAVecRestoreArray(da2prm, X, prm));
6753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
676c4762a1bSJed Brown }
677c4762a1bSJed Brown 
THIInitial(SNES snes,Vec X,PetscCtx ctx)6782a8381b2SBarry Smith static PetscErrorCode THIInitial(SNES snes, Vec X, PetscCtx ctx)
679d71ae5a4SJacob Faibussowitsch {
680c4762a1bSJed Brown   THI       thi;
681c4762a1bSJed Brown   PetscInt  i, j, k, xs, xm, ys, ym, zs, zm, mx, my;
682c4762a1bSJed Brown   PetscReal hx, hy;
683c4762a1bSJed Brown   PrmNode **prm;
684c4762a1bSJed Brown   Node   ***x;
685c4762a1bSJed Brown   DM        da;
686c4762a1bSJed Brown 
687c4762a1bSJed Brown   PetscFunctionBeginUser;
6889566063dSJacob Faibussowitsch   PetscCall(SNESGetDM(snes, &da));
6899566063dSJacob Faibussowitsch   PetscCall(DMGetApplicationContext(da, &thi));
6909566063dSJacob Faibussowitsch   PetscCall(DMDAGetInfo(da, 0, 0, &my, &mx, 0, 0, 0, 0, 0, 0, 0, 0, 0));
6919566063dSJacob Faibussowitsch   PetscCall(DMDAGetCorners(da, &zs, &ys, &xs, &zm, &ym, &xm));
6929566063dSJacob Faibussowitsch   PetscCall(DMDAVecGetArray(da, X, &x));
6939566063dSJacob Faibussowitsch   PetscCall(THIDAGetPrm(da, &prm));
694c4762a1bSJed Brown   hx = thi->Lx / mx;
695c4762a1bSJed Brown   hy = thi->Ly / my;
696c4762a1bSJed Brown   for (i = xs; i < xs + xm; i++) {
697c4762a1bSJed Brown     for (j = ys; j < ys + ym; j++) {
698c4762a1bSJed Brown       for (k = zs; k < zs + zm; k++) {
6999371c9d4SSatish Balay         const PetscScalar zm1 = zm - 1, drivingx = thi->rhog * (prm[i + 1][j].b + prm[i + 1][j].h - prm[i - 1][j].b - prm[i - 1][j].h) / (2 * hx), drivingy = thi->rhog * (prm[i][j + 1].b + prm[i][j + 1].h - prm[i][j - 1].b - prm[i][j - 1].h) / (2 * hy);
700c4762a1bSJed Brown         x[i][j][k].u = 0. * drivingx * prm[i][j].h * (PetscScalar)k / zm1;
701c4762a1bSJed Brown         x[i][j][k].v = 0. * drivingy * prm[i][j].h * (PetscScalar)k / zm1;
702c4762a1bSJed Brown       }
703c4762a1bSJed Brown     }
704c4762a1bSJed Brown   }
7059566063dSJacob Faibussowitsch   PetscCall(DMDAVecRestoreArray(da, X, &x));
7069566063dSJacob Faibussowitsch   PetscCall(THIDARestorePrm(da, &prm));
7073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
708c4762a1bSJed Brown }
709c4762a1bSJed Brown 
PointwiseNonlinearity(THI thi,const Node n[PETSC_RESTRICT],const PetscReal phi[PETSC_RESTRICT],PetscReal dphi[PETSC_RESTRICT][3],PetscScalar * PETSC_RESTRICT u,PetscScalar * PETSC_RESTRICT v,PetscScalar du[PETSC_RESTRICT],PetscScalar dv[PETSC_RESTRICT],PetscReal * eta,PetscReal * deta)710d71ae5a4SJacob Faibussowitsch static void PointwiseNonlinearity(THI thi, const Node n[PETSC_RESTRICT], const PetscReal phi[PETSC_RESTRICT], PetscReal dphi[PETSC_RESTRICT][3], PetscScalar *PETSC_RESTRICT u, PetscScalar *PETSC_RESTRICT v, PetscScalar du[PETSC_RESTRICT], PetscScalar dv[PETSC_RESTRICT], PetscReal *eta, PetscReal *deta)
711d71ae5a4SJacob Faibussowitsch {
712c4762a1bSJed Brown   PetscInt    l, ll;
713c4762a1bSJed Brown   PetscScalar gam;
714c4762a1bSJed Brown 
715c4762a1bSJed Brown   du[0] = du[1] = du[2] = 0;
716c4762a1bSJed Brown   dv[0] = dv[1] = dv[2] = 0;
717c4762a1bSJed Brown   *u                    = 0;
718c4762a1bSJed Brown   *v                    = 0;
719c4762a1bSJed Brown   for (l = 0; l < 8; l++) {
720c4762a1bSJed Brown     *u += phi[l] * n[l].u;
721c4762a1bSJed Brown     *v += phi[l] * n[l].v;
722c4762a1bSJed Brown     for (ll = 0; ll < 3; ll++) {
723c4762a1bSJed Brown       du[ll] += dphi[l][ll] * n[l].u;
724c4762a1bSJed Brown       dv[ll] += dphi[l][ll] * n[l].v;
725c4762a1bSJed Brown     }
726c4762a1bSJed Brown   }
727c4762a1bSJed Brown   gam = PetscSqr(du[0]) + PetscSqr(dv[1]) + du[0] * dv[1] + 0.25 * PetscSqr(du[1] + dv[0]) + 0.25 * PetscSqr(du[2]) + 0.25 * PetscSqr(dv[2]);
728c4762a1bSJed Brown   THIViscosity(thi, PetscRealPart(gam), eta, deta);
729c4762a1bSJed Brown }
730c4762a1bSJed Brown 
PointwiseNonlinearity2D(THI thi,Node n[],PetscReal phi[],PetscReal dphi[4][2],PetscScalar * u,PetscScalar * v,PetscScalar du[],PetscScalar dv[],PetscReal * eta,PetscReal * deta)731d71ae5a4SJacob Faibussowitsch static void PointwiseNonlinearity2D(THI thi, Node n[], PetscReal phi[], PetscReal dphi[4][2], PetscScalar *u, PetscScalar *v, PetscScalar du[], PetscScalar dv[], PetscReal *eta, PetscReal *deta)
732d71ae5a4SJacob Faibussowitsch {
733c4762a1bSJed Brown   PetscInt    l, ll;
734c4762a1bSJed Brown   PetscScalar gam;
735c4762a1bSJed Brown 
736c4762a1bSJed Brown   du[0] = du[1] = 0;
737c4762a1bSJed Brown   dv[0] = dv[1] = 0;
738c4762a1bSJed Brown   *u            = 0;
739c4762a1bSJed Brown   *v            = 0;
740c4762a1bSJed Brown   for (l = 0; l < 4; l++) {
741c4762a1bSJed Brown     *u += phi[l] * n[l].u;
742c4762a1bSJed Brown     *v += phi[l] * n[l].v;
743c4762a1bSJed Brown     for (ll = 0; ll < 2; ll++) {
744c4762a1bSJed Brown       du[ll] += dphi[l][ll] * n[l].u;
745c4762a1bSJed Brown       dv[ll] += dphi[l][ll] * n[l].v;
746c4762a1bSJed Brown     }
747c4762a1bSJed Brown   }
748c4762a1bSJed Brown   gam = PetscSqr(du[0]) + PetscSqr(dv[1]) + du[0] * dv[1] + 0.25 * PetscSqr(du[1] + dv[0]);
749c4762a1bSJed Brown   THIViscosity(thi, PetscRealPart(gam), eta, deta);
750c4762a1bSJed Brown }
751c4762a1bSJed Brown 
THIFunctionLocal(DMDALocalInfo * info,Node *** x,Node *** f,THI thi)752d71ae5a4SJacob Faibussowitsch static PetscErrorCode THIFunctionLocal(DMDALocalInfo *info, Node ***x, Node ***f, THI thi)
753d71ae5a4SJacob Faibussowitsch {
754c4762a1bSJed Brown   PetscInt  xs, ys, xm, ym, zm, i, j, k, q, l;
755c4762a1bSJed Brown   PetscReal hx, hy, etamin, etamax, beta2min, beta2max;
756c4762a1bSJed Brown   PrmNode **prm;
757c4762a1bSJed Brown 
758c4762a1bSJed Brown   PetscFunctionBeginUser;
759c4762a1bSJed Brown   xs = info->zs;
760c4762a1bSJed Brown   ys = info->ys;
761c4762a1bSJed Brown   xm = info->zm;
762c4762a1bSJed Brown   ym = info->ym;
763c4762a1bSJed Brown   zm = info->xm;
764c4762a1bSJed Brown   hx = thi->Lx / info->mz;
765c4762a1bSJed Brown   hy = thi->Ly / info->my;
766c4762a1bSJed Brown 
767c4762a1bSJed Brown   etamin   = 1e100;
768c4762a1bSJed Brown   etamax   = 0;
769c4762a1bSJed Brown   beta2min = 1e100;
770c4762a1bSJed Brown   beta2max = 0;
771c4762a1bSJed Brown 
7729566063dSJacob Faibussowitsch   PetscCall(THIDAGetPrm(info->da, &prm));
773c4762a1bSJed Brown 
774c4762a1bSJed Brown   for (i = xs; i < xs + xm; i++) {
775c4762a1bSJed Brown     for (j = ys; j < ys + ym; j++) {
776c4762a1bSJed Brown       PrmNode pn[4];
777c4762a1bSJed Brown       QuadExtract(prm, i, j, pn);
778c4762a1bSJed Brown       for (k = 0; k < zm - 1; k++) {
779c4762a1bSJed Brown         PetscInt  ls = 0;
780c4762a1bSJed Brown         Node      n[8], *fn[8];
781c4762a1bSJed Brown         PetscReal zn[8], etabase = 0;
782c4762a1bSJed Brown         PrmHexGetZ(pn, k, zm, zn);
783c4762a1bSJed Brown         HexExtract(x, i, j, k, n);
784c4762a1bSJed Brown         HexExtractRef(f, i, j, k, fn);
785c4762a1bSJed Brown         if (thi->no_slip && k == 0) {
786c4762a1bSJed Brown           for (l = 0; l < 4; l++) n[l].u = n[l].v = 0;
787c4762a1bSJed Brown           /* The first 4 basis functions lie on the bottom layer, so their contribution is exactly 0, hence we can skip them */
788c4762a1bSJed Brown           ls = 4;
789c4762a1bSJed Brown         }
790c4762a1bSJed Brown         for (q = 0; q < 8; q++) {
791c4762a1bSJed Brown           PetscReal   dz[3], phi[8], dphi[8][3], jw, eta, deta;
792c4762a1bSJed Brown           PetscScalar du[3], dv[3], u, v;
793c4762a1bSJed Brown           HexGrad(HexQDeriv[q], zn, dz);
794c4762a1bSJed Brown           HexComputeGeometry(q, hx, hy, dz, phi, dphi, &jw);
795c4762a1bSJed Brown           PointwiseNonlinearity(thi, n, phi, dphi, &u, &v, du, dv, &eta, &deta);
796c4762a1bSJed Brown           jw /= thi->rhog; /* scales residuals to be O(1) */
797c4762a1bSJed Brown           if (q == 0) etabase = eta;
798c4762a1bSJed Brown           RangeUpdate(&etamin, &etamax, eta);
799c4762a1bSJed Brown           for (l = ls; l < 8; l++) { /* test functions */
800c4762a1bSJed Brown             const PetscReal ds[2] = {-PetscSinReal(thi->alpha), 0};
801c4762a1bSJed Brown             const PetscReal pp = phi[l], *dp = dphi[l];
802c4762a1bSJed Brown             fn[l]->u += dp[0] * jw * eta * (4. * du[0] + 2. * dv[1]) + dp[1] * jw * eta * (du[1] + dv[0]) + dp[2] * jw * eta * du[2] + pp * jw * thi->rhog * ds[0];
803c4762a1bSJed Brown             fn[l]->v += dp[1] * jw * eta * (2. * du[0] + 4. * dv[1]) + dp[0] * jw * eta * (du[1] + dv[0]) + dp[2] * jw * eta * dv[2] + pp * jw * thi->rhog * ds[1];
804c4762a1bSJed Brown           }
805c4762a1bSJed Brown         }
806c4762a1bSJed Brown         if (k == 0) { /* we are on a bottom face */
807c4762a1bSJed Brown           if (thi->no_slip) {
808c4762a1bSJed Brown             /* Note: Non-Galerkin coarse grid operators are very sensitive to the scaling of Dirichlet boundary
809c4762a1bSJed Brown             * conditions.  After shenanigans above, etabase contains the effective viscosity at the closest quadrature
810c4762a1bSJed Brown             * point to the bed.  We want the diagonal entry in the Dirichlet condition to have similar magnitude to the
811c4762a1bSJed Brown             * diagonal entry corresponding to the adjacent node.  The fundamental scaling of the viscous part is in
812c4762a1bSJed Brown             * diagu, diagv below.  This scaling is easy to recognize by considering the finite difference operator after
813c4762a1bSJed Brown             * scaling by element size.  The no-slip Dirichlet condition is scaled by this factor, and also in the
814c4762a1bSJed Brown             * assembled matrix (see the similar block in THIJacobianLocal).
815c4762a1bSJed Brown             *
816c4762a1bSJed Brown             * Note that the residual at this Dirichlet node is linear in the state at this node, but also depends
817c4762a1bSJed Brown             * (nonlinearly in general) on the neighboring interior nodes through the local viscosity.  This will make
818c4762a1bSJed Brown             * a matrix-free Jacobian have extra entries in the corresponding row.  We assemble only the diagonal part,
819c4762a1bSJed Brown             * so the solution will exactly satisfy the boundary condition after the first linear iteration.
820c4762a1bSJed Brown             */
821c4762a1bSJed Brown             const PetscReal   hz    = PetscRealPart(pn[0].h) / (zm - 1.);
822c4762a1bSJed Brown             const PetscScalar diagu = 2 * etabase / thi->rhog * (hx * hy / hz + hx * hz / hy + 4 * hy * hz / hx), diagv = 2 * etabase / thi->rhog * (hx * hy / hz + 4 * hx * hz / hy + hy * hz / hx);
823c4762a1bSJed Brown             fn[0]->u = thi->dirichlet_scale * diagu * x[i][j][k].u;
824c4762a1bSJed Brown             fn[0]->v = thi->dirichlet_scale * diagv * x[i][j][k].v;
825c4762a1bSJed Brown           } else { /* Integrate over bottom face to apply boundary condition */
826c4762a1bSJed Brown             for (q = 0; q < 4; q++) {
827c4762a1bSJed Brown               const PetscReal jw = 0.25 * hx * hy / thi->rhog, *phi = QuadQInterp[q];
828c4762a1bSJed Brown               PetscScalar     u = 0, v = 0, rbeta2 = 0;
829c4762a1bSJed Brown               PetscReal       beta2, dbeta2;
830c4762a1bSJed Brown               for (l = 0; l < 4; l++) {
831c4762a1bSJed Brown                 u += phi[l] * n[l].u;
832c4762a1bSJed Brown                 v += phi[l] * n[l].v;
833c4762a1bSJed Brown                 rbeta2 += phi[l] * pn[l].beta2;
834c4762a1bSJed Brown               }
835c4762a1bSJed Brown               THIFriction(thi, PetscRealPart(rbeta2), PetscRealPart(u * u + v * v) / 2, &beta2, &dbeta2);
836c4762a1bSJed Brown               RangeUpdate(&beta2min, &beta2max, beta2);
837c4762a1bSJed Brown               for (l = 0; l < 4; l++) {
838c4762a1bSJed Brown                 const PetscReal pp = phi[l];
839c4762a1bSJed Brown                 fn[ls + l]->u += pp * jw * beta2 * u;
840c4762a1bSJed Brown                 fn[ls + l]->v += pp * jw * beta2 * v;
841c4762a1bSJed Brown               }
842c4762a1bSJed Brown             }
843c4762a1bSJed Brown           }
844c4762a1bSJed Brown         }
845c4762a1bSJed Brown       }
846c4762a1bSJed Brown     }
847c4762a1bSJed Brown   }
848c4762a1bSJed Brown 
8499566063dSJacob Faibussowitsch   PetscCall(THIDARestorePrm(info->da, &prm));
850c4762a1bSJed Brown 
8519566063dSJacob Faibussowitsch   PetscCall(PRangeMinMax(&thi->eta, etamin, etamax));
8529566063dSJacob Faibussowitsch   PetscCall(PRangeMinMax(&thi->beta2, beta2min, beta2max));
8533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
854c4762a1bSJed Brown }
855c4762a1bSJed Brown 
THIMatrixStatistics(THI thi,Mat B,PetscViewer viewer)856d71ae5a4SJacob Faibussowitsch static PetscErrorCode THIMatrixStatistics(THI thi, Mat B, PetscViewer viewer)
857d71ae5a4SJacob Faibussowitsch {
858c4762a1bSJed Brown   PetscReal   nrm;
859c4762a1bSJed Brown   PetscInt    m;
860c4762a1bSJed Brown   PetscMPIInt rank;
861c4762a1bSJed Brown 
862c4762a1bSJed Brown   PetscFunctionBeginUser;
8639566063dSJacob Faibussowitsch   PetscCall(MatNorm(B, NORM_FROBENIUS, &nrm));
8649566063dSJacob Faibussowitsch   PetscCall(MatGetSize(B, &m, 0));
8659566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &rank));
866dd400576SPatrick Sanan   if (rank == 0) {
867c4762a1bSJed Brown     PetscScalar val0, val2;
8689566063dSJacob Faibussowitsch     PetscCall(MatGetValue(B, 0, 0, &val0));
8699566063dSJacob Faibussowitsch     PetscCall(MatGetValue(B, 2, 2, &val2));
8709371c9d4SSatish Balay     PetscCall(PetscViewerASCIIPrintf(viewer, "Matrix dim %" PetscInt_FMT " norm %8.2e (0,0) %8.2e  (2,2) %8.2e %8.2e <= eta <= %8.2e %8.2e <= beta2 <= %8.2e\n", m, (double)nrm, (double)PetscRealPart(val0), (double)PetscRealPart(val2),
8719371c9d4SSatish Balay                                      (double)thi->eta.cmin, (double)thi->eta.cmax, (double)thi->beta2.cmin, (double)thi->beta2.cmax));
872c4762a1bSJed Brown   }
8733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
874c4762a1bSJed Brown }
875c4762a1bSJed Brown 
THISurfaceStatistics(DM da,Vec X,PetscReal * min,PetscReal * max,PetscReal * mean)876d71ae5a4SJacob Faibussowitsch static PetscErrorCode THISurfaceStatistics(DM da, Vec X, PetscReal *min, PetscReal *max, PetscReal *mean)
877d71ae5a4SJacob Faibussowitsch {
878c4762a1bSJed Brown   Node     ***x;
879c4762a1bSJed Brown   PetscInt    i, j, xs, ys, zs, xm, ym, zm, mx, my, mz;
880c4762a1bSJed Brown   PetscReal   umin = 1e100, umax = -1e100;
881c4762a1bSJed Brown   PetscScalar usum = 0.0, gusum;
882c4762a1bSJed Brown 
883c4762a1bSJed Brown   PetscFunctionBeginUser;
884c4762a1bSJed Brown   *min = *max = *mean = 0;
8859566063dSJacob Faibussowitsch   PetscCall(DMDAGetInfo(da, 0, &mz, &my, &mx, 0, 0, 0, 0, 0, 0, 0, 0, 0));
8869566063dSJacob Faibussowitsch   PetscCall(DMDAGetCorners(da, &zs, &ys, &xs, &zm, &ym, &xm));
887e00437b9SBarry Smith   PetscCheck(zs == 0 && zm == mz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected decomposition");
8889566063dSJacob Faibussowitsch   PetscCall(DMDAVecGetArray(da, X, &x));
889c4762a1bSJed Brown   for (i = xs; i < xs + xm; i++) {
890c4762a1bSJed Brown     for (j = ys; j < ys + ym; j++) {
891c4762a1bSJed Brown       PetscReal u = PetscRealPart(x[i][j][zm - 1].u);
892c4762a1bSJed Brown       RangeUpdate(&umin, &umax, u);
893c4762a1bSJed Brown       usum += u;
894c4762a1bSJed Brown     }
895c4762a1bSJed Brown   }
8969566063dSJacob Faibussowitsch   PetscCall(DMDAVecRestoreArray(da, X, &x));
897462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&umin, min, 1, MPIU_REAL, MPIU_MIN, PetscObjectComm((PetscObject)da)));
898462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&umax, max, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)da)));
899462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&usum, &gusum, 1, MPIU_SCALAR, MPIU_SUM, PetscObjectComm((PetscObject)da)));
900c4762a1bSJed Brown   *mean = PetscRealPart(gusum) / (mx * my);
9013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
902c4762a1bSJed Brown }
903c4762a1bSJed Brown 
THISolveStatistics(THI thi,SNES snes,PetscInt coarsened,const char name[])904d71ae5a4SJacob Faibussowitsch static PetscErrorCode THISolveStatistics(THI thi, SNES snes, PetscInt coarsened, const char name[])
905d71ae5a4SJacob Faibussowitsch {
906c4762a1bSJed Brown   MPI_Comm comm;
907c4762a1bSJed Brown   Vec      X;
908c4762a1bSJed Brown   DM       dm;
909c4762a1bSJed Brown 
910c4762a1bSJed Brown   PetscFunctionBeginUser;
9119566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)thi, &comm));
9129566063dSJacob Faibussowitsch   PetscCall(SNESGetSolution(snes, &X));
9139566063dSJacob Faibussowitsch   PetscCall(SNESGetDM(snes, &dm));
9149566063dSJacob Faibussowitsch   PetscCall(PetscPrintf(comm, "Solution statistics after solve: %s\n", name));
915c4762a1bSJed Brown   {
916c4762a1bSJed Brown     PetscInt            its, lits;
917c4762a1bSJed Brown     SNESConvergedReason reason;
9189566063dSJacob Faibussowitsch     PetscCall(SNESGetIterationNumber(snes, &its));
9199566063dSJacob Faibussowitsch     PetscCall(SNESGetConvergedReason(snes, &reason));
9209566063dSJacob Faibussowitsch     PetscCall(SNESGetLinearSolveIterations(snes, &lits));
92163a3b9bcSJacob Faibussowitsch     PetscCall(PetscPrintf(comm, "%s: Number of SNES iterations = %" PetscInt_FMT ", total linear iterations = %" PetscInt_FMT "\n", SNESConvergedReasons[reason], its, lits));
922c4762a1bSJed Brown   }
923c4762a1bSJed Brown   {
924c4762a1bSJed Brown     PetscReal          nrm2, tmin[3] = {1e100, 1e100, 1e100}, tmax[3] = {-1e100, -1e100, -1e100}, min[3], max[3];
925c4762a1bSJed Brown     PetscInt           i, j, m;
926c4762a1bSJed Brown     const PetscScalar *x;
9279566063dSJacob Faibussowitsch     PetscCall(VecNorm(X, NORM_2, &nrm2));
9289566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(X, &m));
9299566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(X, &x));
930c4762a1bSJed Brown     for (i = 0; i < m; i += 2) {
931c4762a1bSJed Brown       PetscReal u = PetscRealPart(x[i]), v = PetscRealPart(x[i + 1]), c = PetscSqrtReal(u * u + v * v);
932c4762a1bSJed Brown       tmin[0] = PetscMin(u, tmin[0]);
933c4762a1bSJed Brown       tmin[1] = PetscMin(v, tmin[1]);
934c4762a1bSJed Brown       tmin[2] = PetscMin(c, tmin[2]);
935c4762a1bSJed Brown       tmax[0] = PetscMax(u, tmax[0]);
936c4762a1bSJed Brown       tmax[1] = PetscMax(v, tmax[1]);
937c4762a1bSJed Brown       tmax[2] = PetscMax(c, tmax[2]);
938c4762a1bSJed Brown     }
9399566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(X, &x));
940462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(tmin, min, 3, MPIU_REAL, MPIU_MIN, PetscObjectComm((PetscObject)thi)));
941462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(tmax, max, 3, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)thi)));
942c4762a1bSJed Brown     /* Dimensionalize to meters/year */
943c4762a1bSJed Brown     nrm2 *= thi->units->year / thi->units->meter;
944c4762a1bSJed Brown     for (j = 0; j < 3; j++) {
945c4762a1bSJed Brown       min[j] *= thi->units->year / thi->units->meter;
946c4762a1bSJed Brown       max[j] *= thi->units->year / thi->units->meter;
947c4762a1bSJed Brown     }
948c4762a1bSJed Brown     if (min[0] == 0.0) min[0] = 0.0;
9499566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(comm, "|X|_2 %g   %g <= u <=  %g   %g <= v <=  %g   %g <= c <=  %g \n", (double)nrm2, (double)min[0], (double)max[0], (double)min[1], (double)max[1], (double)min[2], (double)max[2]));
950c4762a1bSJed Brown     {
951c4762a1bSJed Brown       PetscReal umin, umax, umean;
9529566063dSJacob Faibussowitsch       PetscCall(THISurfaceStatistics(dm, X, &umin, &umax, &umean));
953c4762a1bSJed Brown       umin *= thi->units->year / thi->units->meter;
954c4762a1bSJed Brown       umax *= thi->units->year / thi->units->meter;
955c4762a1bSJed Brown       umean *= thi->units->year / thi->units->meter;
9569566063dSJacob Faibussowitsch       PetscCall(PetscPrintf(comm, "Surface statistics: u in [%12.6e, %12.6e] mean %12.6e\n", (double)umin, (double)umax, (double)umean));
957c4762a1bSJed Brown     }
958c4762a1bSJed Brown     /* These values stay nondimensional */
9599566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(comm, "Global eta range   %g to %g converged range %g to %g\n", (double)thi->eta.min, (double)thi->eta.max, (double)thi->eta.cmin, (double)thi->eta.cmax));
9609566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(comm, "Global beta2 range %g to %g converged range %g to %g\n", (double)thi->beta2.min, (double)thi->beta2.max, (double)thi->beta2.cmin, (double)thi->beta2.cmax));
961c4762a1bSJed Brown   }
9623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
963c4762a1bSJed Brown }
964c4762a1bSJed Brown 
THIJacobianLocal_2D(DMDALocalInfo * info,Node ** x,Mat J,Mat B,THI thi)965d71ae5a4SJacob Faibussowitsch static PetscErrorCode THIJacobianLocal_2D(DMDALocalInfo *info, Node **x, Mat J, Mat B, THI thi)
966d71ae5a4SJacob Faibussowitsch {
967c4762a1bSJed Brown   PetscInt  xs, ys, xm, ym, i, j, q, l, ll;
968c4762a1bSJed Brown   PetscReal hx, hy;
969c4762a1bSJed Brown   PrmNode **prm;
970c4762a1bSJed Brown 
971c4762a1bSJed Brown   PetscFunctionBeginUser;
972c4762a1bSJed Brown   xs = info->ys;
973c4762a1bSJed Brown   ys = info->xs;
974c4762a1bSJed Brown   xm = info->ym;
975c4762a1bSJed Brown   ym = info->xm;
976c4762a1bSJed Brown   hx = thi->Lx / info->my;
977c4762a1bSJed Brown   hy = thi->Ly / info->mx;
978c4762a1bSJed Brown 
9799566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(B));
9809566063dSJacob Faibussowitsch   PetscCall(THIDAGetPrm(info->da, &prm));
981c4762a1bSJed Brown 
982c4762a1bSJed Brown   for (i = xs; i < xs + xm; i++) {
983c4762a1bSJed Brown     for (j = ys; j < ys + ym; j++) {
984c4762a1bSJed Brown       Node        n[4];
985c4762a1bSJed Brown       PrmNode     pn[4];
986c4762a1bSJed Brown       PetscScalar Ke[4 * 2][4 * 2];
987c4762a1bSJed Brown       QuadExtract(prm, i, j, pn);
988c4762a1bSJed Brown       QuadExtract(x, i, j, n);
9899566063dSJacob Faibussowitsch       PetscCall(PetscMemzero(Ke, sizeof(Ke)));
990c4762a1bSJed Brown       for (q = 0; q < 4; q++) {
991c4762a1bSJed Brown         PetscReal   phi[4], dphi[4][2], jw, eta, deta, beta2, dbeta2;
992c4762a1bSJed Brown         PetscScalar u, v, du[2], dv[2], h = 0, rbeta2 = 0;
993c4762a1bSJed Brown         for (l = 0; l < 4; l++) {
994c4762a1bSJed Brown           phi[l]     = QuadQInterp[q][l];
995c4762a1bSJed Brown           dphi[l][0] = QuadQDeriv[q][l][0] * 2. / hx;
996c4762a1bSJed Brown           dphi[l][1] = QuadQDeriv[q][l][1] * 2. / hy;
997c4762a1bSJed Brown           h += phi[l] * pn[l].h;
998c4762a1bSJed Brown           rbeta2 += phi[l] * pn[l].beta2;
999c4762a1bSJed Brown         }
1000c4762a1bSJed Brown         jw = 0.25 * hx * hy / thi->rhog; /* rhog is only scaling */
1001c4762a1bSJed Brown         PointwiseNonlinearity2D(thi, n, phi, dphi, &u, &v, du, dv, &eta, &deta);
1002c4762a1bSJed Brown         THIFriction(thi, PetscRealPart(rbeta2), PetscRealPart(u * u + v * v) / 2, &beta2, &dbeta2);
1003c4762a1bSJed Brown         for (l = 0; l < 4; l++) {
1004c4762a1bSJed Brown           const PetscReal pp = phi[l], *dp = dphi[l];
1005c4762a1bSJed Brown           for (ll = 0; ll < 4; ll++) {
1006c4762a1bSJed Brown             const PetscReal ppl = phi[ll], *dpl = dphi[ll];
1007c4762a1bSJed Brown             PetscScalar     dgdu, dgdv;
1008c4762a1bSJed Brown             dgdu = 2. * du[0] * dpl[0] + dv[1] * dpl[0] + 0.5 * (du[1] + dv[0]) * dpl[1];
1009c4762a1bSJed Brown             dgdv = 2. * dv[1] * dpl[1] + du[0] * dpl[1] + 0.5 * (du[1] + dv[0]) * dpl[0];
1010c4762a1bSJed Brown             /* Picard part */
1011c4762a1bSJed Brown             Ke[l * 2 + 0][ll * 2 + 0] += dp[0] * jw * eta * 4. * dpl[0] + dp[1] * jw * eta * dpl[1] + pp * jw * (beta2 / h) * ppl * thi->ssa_friction_scale;
1012c4762a1bSJed Brown             Ke[l * 2 + 0][ll * 2 + 1] += dp[0] * jw * eta * 2. * dpl[1] + dp[1] * jw * eta * dpl[0];
1013c4762a1bSJed Brown             Ke[l * 2 + 1][ll * 2 + 0] += dp[1] * jw * eta * 2. * dpl[0] + dp[0] * jw * eta * dpl[1];
1014c4762a1bSJed Brown             Ke[l * 2 + 1][ll * 2 + 1] += dp[1] * jw * eta * 4. * dpl[1] + dp[0] * jw * eta * dpl[0] + pp * jw * (beta2 / h) * ppl * thi->ssa_friction_scale;
1015c4762a1bSJed Brown             /* extra Newton terms */
1016c4762a1bSJed Brown             Ke[l * 2 + 0][ll * 2 + 0] += dp[0] * jw * deta * dgdu * (4. * du[0] + 2. * dv[1]) + dp[1] * jw * deta * dgdu * (du[1] + dv[0]) + pp * jw * (dbeta2 / h) * u * u * ppl * thi->ssa_friction_scale;
1017c4762a1bSJed Brown             Ke[l * 2 + 0][ll * 2 + 1] += dp[0] * jw * deta * dgdv * (4. * du[0] + 2. * dv[1]) + dp[1] * jw * deta * dgdv * (du[1] + dv[0]) + pp * jw * (dbeta2 / h) * u * v * ppl * thi->ssa_friction_scale;
1018c4762a1bSJed Brown             Ke[l * 2 + 1][ll * 2 + 0] += dp[1] * jw * deta * dgdu * (4. * dv[1] + 2. * du[0]) + dp[0] * jw * deta * dgdu * (du[1] + dv[0]) + pp * jw * (dbeta2 / h) * v * u * ppl * thi->ssa_friction_scale;
1019c4762a1bSJed Brown             Ke[l * 2 + 1][ll * 2 + 1] += dp[1] * jw * deta * dgdv * (4. * dv[1] + 2. * du[0]) + dp[0] * jw * deta * dgdv * (du[1] + dv[0]) + pp * jw * (dbeta2 / h) * v * v * ppl * thi->ssa_friction_scale;
1020c4762a1bSJed Brown           }
1021c4762a1bSJed Brown         }
1022c4762a1bSJed Brown       }
1023c4762a1bSJed Brown       {
10249371c9d4SSatish Balay         const MatStencil rc[4] = {
10259371c9d4SSatish Balay           {0, i,     j,     0},
10269371c9d4SSatish Balay           {0, i + 1, j,     0},
10279371c9d4SSatish Balay           {0, i + 1, j + 1, 0},
10289371c9d4SSatish Balay           {0, i,     j + 1, 0}
10299371c9d4SSatish Balay         };
10309566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlockedStencil(B, 4, rc, 4, rc, &Ke[0][0], ADD_VALUES));
1031c4762a1bSJed Brown       }
1032c4762a1bSJed Brown     }
1033c4762a1bSJed Brown   }
10349566063dSJacob Faibussowitsch   PetscCall(THIDARestorePrm(info->da, &prm));
1035c4762a1bSJed Brown 
10369566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
10379566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
10389566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_SYMMETRIC, PETSC_TRUE));
10399566063dSJacob Faibussowitsch   if (thi->verbose) PetscCall(THIMatrixStatistics(thi, B, PETSC_VIEWER_STDOUT_WORLD));
10403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1041c4762a1bSJed Brown }
1042c4762a1bSJed Brown 
THIJacobianLocal_3D(DMDALocalInfo * info,Node *** x,Mat B,THI thi,THIAssemblyMode amode)1043d71ae5a4SJacob Faibussowitsch static PetscErrorCode THIJacobianLocal_3D(DMDALocalInfo *info, Node ***x, Mat B, THI thi, THIAssemblyMode amode)
1044d71ae5a4SJacob Faibussowitsch {
1045c4762a1bSJed Brown   PetscInt  xs, ys, xm, ym, zm, i, j, k, q, l, ll;
1046c4762a1bSJed Brown   PetscReal hx, hy;
1047c4762a1bSJed Brown   PrmNode **prm;
1048c4762a1bSJed Brown 
1049c4762a1bSJed Brown   PetscFunctionBeginUser;
1050c4762a1bSJed Brown   xs = info->zs;
1051c4762a1bSJed Brown   ys = info->ys;
1052c4762a1bSJed Brown   xm = info->zm;
1053c4762a1bSJed Brown   ym = info->ym;
1054c4762a1bSJed Brown   zm = info->xm;
1055c4762a1bSJed Brown   hx = thi->Lx / info->mz;
1056c4762a1bSJed Brown   hy = thi->Ly / info->my;
1057c4762a1bSJed Brown 
10589566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(B));
10599566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_SUBSET_OFF_PROC_ENTRIES, PETSC_TRUE));
10609566063dSJacob Faibussowitsch   PetscCall(THIDAGetPrm(info->da, &prm));
1061c4762a1bSJed Brown 
1062c4762a1bSJed Brown   for (i = xs; i < xs + xm; i++) {
1063c4762a1bSJed Brown     for (j = ys; j < ys + ym; j++) {
1064c4762a1bSJed Brown       PrmNode pn[4];
1065c4762a1bSJed Brown       QuadExtract(prm, i, j, pn);
1066c4762a1bSJed Brown       for (k = 0; k < zm - 1; k++) {
1067c4762a1bSJed Brown         Node        n[8];
1068c4762a1bSJed Brown         PetscReal   zn[8], etabase = 0;
1069c4762a1bSJed Brown         PetscScalar Ke[8 * 2][8 * 2];
1070c4762a1bSJed Brown         PetscInt    ls = 0;
1071c4762a1bSJed Brown 
1072c4762a1bSJed Brown         PrmHexGetZ(pn, k, zm, zn);
1073c4762a1bSJed Brown         HexExtract(x, i, j, k, n);
10749566063dSJacob Faibussowitsch         PetscCall(PetscMemzero(Ke, sizeof(Ke)));
1075c4762a1bSJed Brown         if (thi->no_slip && k == 0) {
1076c4762a1bSJed Brown           for (l = 0; l < 4; l++) n[l].u = n[l].v = 0;
1077c4762a1bSJed Brown           ls = 4;
1078c4762a1bSJed Brown         }
1079c4762a1bSJed Brown         for (q = 0; q < 8; q++) {
1080c4762a1bSJed Brown           PetscReal   dz[3], phi[8], dphi[8][3], jw, eta, deta;
1081c4762a1bSJed Brown           PetscScalar du[3], dv[3], u, v;
1082c4762a1bSJed Brown           HexGrad(HexQDeriv[q], zn, dz);
1083c4762a1bSJed Brown           HexComputeGeometry(q, hx, hy, dz, phi, dphi, &jw);
1084c4762a1bSJed Brown           PointwiseNonlinearity(thi, n, phi, dphi, &u, &v, du, dv, &eta, &deta);
1085c4762a1bSJed Brown           jw /= thi->rhog; /* residuals are scaled by this factor */
1086c4762a1bSJed Brown           if (q == 0) etabase = eta;
1087c4762a1bSJed Brown           for (l = ls; l < 8; l++) { /* test functions */
1088c4762a1bSJed Brown             const PetscReal *PETSC_RESTRICT dp = dphi[l];
1089c4762a1bSJed Brown #if USE_SSE2_KERNELS
1090c4762a1bSJed Brown             /* gcc (up to my 4.5 snapshot) is really bad at hoisting intrinsics so we do it manually */
10919371c9d4SSatish Balay             __m128d p4 = _mm_set1_pd(4), p2 = _mm_set1_pd(2), p05 = _mm_set1_pd(0.5), p42 = _mm_setr_pd(4, 2), p24 = _mm_shuffle_pd(p42, p42, _MM_SHUFFLE2(0, 1)), du0 = _mm_set1_pd(du[0]), du1 = _mm_set1_pd(du[1]), du2 = _mm_set1_pd(du[2]), dv0 = _mm_set1_pd(dv[0]), dv1 = _mm_set1_pd(dv[1]), dv2 = _mm_set1_pd(dv[2]), jweta = _mm_set1_pd(jw * eta), jwdeta = _mm_set1_pd(jw * deta), dp0 = _mm_set1_pd(dp[0]), dp1 = _mm_set1_pd(dp[1]), dp2 = _mm_set1_pd(dp[2]), dp0jweta = _mm_mul_pd(dp0, jweta), dp1jweta = _mm_mul_pd(dp1, jweta), dp2jweta = _mm_mul_pd(dp2, jweta), p4du0p2dv1 = _mm_add_pd(_mm_mul_pd(p4, du0), _mm_mul_pd(p2, dv1)), /* 4 du0 + 2 dv1 */
1092c4762a1bSJed Brown               p4dv1p2du0 = _mm_add_pd(_mm_mul_pd(p4, dv1), _mm_mul_pd(p2, du0)), /* 4 dv1 + 2 du0 */
1093c4762a1bSJed Brown               pdu2dv2    = _mm_unpacklo_pd(du2, dv2),                            /* [du2, dv2] */
1094c4762a1bSJed Brown               du1pdv0    = _mm_add_pd(du1, dv0),                                 /* du1 + dv0 */
1095c4762a1bSJed Brown               t1         = _mm_mul_pd(dp0, p4du0p2dv1),                          /* dp0 (4 du0 + 2 dv1) */
1096c4762a1bSJed Brown               t2         = _mm_mul_pd(dp1, p4dv1p2du0);                          /* dp1 (4 dv1 + 2 du0) */
1097c4762a1bSJed Brown 
1098c4762a1bSJed Brown #endif
1099*beceaeb6SBarry Smith #if defined(COMPUTE_LOWER_TRIANGULAR)     /* The element matrices are always symmetric so computing the lower-triangular part is not necessary */
1100c4762a1bSJed Brown             for (ll = ls; ll < 8; ll++) { /* trial functions */
1101c4762a1bSJed Brown #else
1102c4762a1bSJed Brown             for (ll = l; ll < 8; ll++) {
1103c4762a1bSJed Brown #endif
1104c4762a1bSJed Brown               const PetscReal *PETSC_RESTRICT dpl = dphi[ll];
1105c4762a1bSJed Brown               if (amode == THIASSEMBLY_TRIDIAGONAL && (l - ll) % 4) continue; /* these entries would not be inserted */
1106c4762a1bSJed Brown #if !USE_SSE2_KERNELS
1107c4762a1bSJed Brown               /* The analytic Jacobian in nice, easy-to-read form */
1108c4762a1bSJed Brown               {
1109c4762a1bSJed Brown                 PetscScalar dgdu, dgdv;
1110c4762a1bSJed Brown                 dgdu = 2. * du[0] * dpl[0] + dv[1] * dpl[0] + 0.5 * (du[1] + dv[0]) * dpl[1] + 0.5 * du[2] * dpl[2];
1111c4762a1bSJed Brown                 dgdv = 2. * dv[1] * dpl[1] + du[0] * dpl[1] + 0.5 * (du[1] + dv[0]) * dpl[0] + 0.5 * dv[2] * dpl[2];
1112c4762a1bSJed Brown                 /* Picard part */
1113c4762a1bSJed Brown                 Ke[l * 2 + 0][ll * 2 + 0] += dp[0] * jw * eta * 4. * dpl[0] + dp[1] * jw * eta * dpl[1] + dp[2] * jw * eta * dpl[2];
1114c4762a1bSJed Brown                 Ke[l * 2 + 0][ll * 2 + 1] += dp[0] * jw * eta * 2. * dpl[1] + dp[1] * jw * eta * dpl[0];
1115c4762a1bSJed Brown                 Ke[l * 2 + 1][ll * 2 + 0] += dp[1] * jw * eta * 2. * dpl[0] + dp[0] * jw * eta * dpl[1];
1116c4762a1bSJed Brown                 Ke[l * 2 + 1][ll * 2 + 1] += dp[1] * jw * eta * 4. * dpl[1] + dp[0] * jw * eta * dpl[0] + dp[2] * jw * eta * dpl[2];
1117c4762a1bSJed Brown                 /* extra Newton terms */
1118c4762a1bSJed Brown                 Ke[l * 2 + 0][ll * 2 + 0] += dp[0] * jw * deta * dgdu * (4. * du[0] + 2. * dv[1]) + dp[1] * jw * deta * dgdu * (du[1] + dv[0]) + dp[2] * jw * deta * dgdu * du[2];
1119c4762a1bSJed Brown                 Ke[l * 2 + 0][ll * 2 + 1] += dp[0] * jw * deta * dgdv * (4. * du[0] + 2. * dv[1]) + dp[1] * jw * deta * dgdv * (du[1] + dv[0]) + dp[2] * jw * deta * dgdv * du[2];
1120c4762a1bSJed Brown                 Ke[l * 2 + 1][ll * 2 + 0] += dp[1] * jw * deta * dgdu * (4. * dv[1] + 2. * du[0]) + dp[0] * jw * deta * dgdu * (du[1] + dv[0]) + dp[2] * jw * deta * dgdu * dv[2];
1121c4762a1bSJed Brown                 Ke[l * 2 + 1][ll * 2 + 1] += dp[1] * jw * deta * dgdv * (4. * dv[1] + 2. * du[0]) + dp[0] * jw * deta * dgdv * (du[1] + dv[0]) + dp[2] * jw * deta * dgdv * dv[2];
1122c4762a1bSJed Brown               }
1123c4762a1bSJed Brown #else
1124c4762a1bSJed Brown               /* This SSE2 code is an exact replica of above, but uses explicit packed instructions for some speed
1125c4762a1bSJed Brown               * benefit.  On my hardware, these intrinsics are almost twice as fast as above, reducing total assembly cost
1126c4762a1bSJed Brown               * by 25 to 30 percent. */
1127c4762a1bSJed Brown               {
11289371c9d4SSatish Balay                 __m128d keu = _mm_loadu_pd(&Ke[l * 2 + 0][ll * 2 + 0]), kev = _mm_loadu_pd(&Ke[l * 2 + 1][ll * 2 + 0]), dpl01 = _mm_loadu_pd(&dpl[0]), dpl10 = _mm_shuffle_pd(dpl01, dpl01, _MM_SHUFFLE2(0, 1)), dpl2 = _mm_set_sd(dpl[2]), t0, t3, pdgduv;
11299371c9d4SSatish Balay                 keu    = _mm_add_pd(keu, _mm_add_pd(_mm_mul_pd(_mm_mul_pd(dp0jweta, p42), dpl01), _mm_add_pd(_mm_mul_pd(dp1jweta, dpl10), _mm_mul_pd(dp2jweta, dpl2))));
11309371c9d4SSatish Balay                 kev    = _mm_add_pd(kev, _mm_add_pd(_mm_mul_pd(_mm_mul_pd(dp1jweta, p24), dpl01), _mm_add_pd(_mm_mul_pd(dp0jweta, dpl10), _mm_mul_pd(dp2jweta, _mm_shuffle_pd(dpl2, dpl2, _MM_SHUFFLE2(0, 1))))));
11319371c9d4SSatish Balay                 pdgduv = _mm_mul_pd(p05, _mm_add_pd(_mm_add_pd(_mm_mul_pd(p42, _mm_mul_pd(du0, dpl01)), _mm_mul_pd(p24, _mm_mul_pd(dv1, dpl01))), _mm_add_pd(_mm_mul_pd(du1pdv0, dpl10), _mm_mul_pd(pdu2dv2, _mm_set1_pd(dpl[2]))))); /* [dgdu, dgdv] */
1132c4762a1bSJed Brown                 t0     = _mm_mul_pd(jwdeta, pdgduv); /* jw deta [dgdu, dgdv] */
1133c4762a1bSJed Brown                 t3     = _mm_mul_pd(t0, du1pdv0);    /* t0 (du1 + dv0) */
11349371c9d4SSatish Balay                 _mm_storeu_pd(&Ke[l * 2 + 0][ll * 2 + 0], _mm_add_pd(keu, _mm_add_pd(_mm_mul_pd(t1, t0), _mm_add_pd(_mm_mul_pd(dp1, t3), _mm_mul_pd(t0, _mm_mul_pd(dp2, du2))))));
11359371c9d4SSatish Balay                 _mm_storeu_pd(&Ke[l * 2 + 1][ll * 2 + 0], _mm_add_pd(kev, _mm_add_pd(_mm_mul_pd(t2, t0), _mm_add_pd(_mm_mul_pd(dp0, t3), _mm_mul_pd(t0, _mm_mul_pd(dp2, dv2))))));
1136c4762a1bSJed Brown               }
1137c4762a1bSJed Brown #endif
1138c4762a1bSJed Brown             }
1139c4762a1bSJed Brown           }
1140c4762a1bSJed Brown         }
1141c4762a1bSJed Brown         if (k == 0) { /* on a bottom face */
1142c4762a1bSJed Brown           if (thi->no_slip) {
1143c4762a1bSJed Brown             const PetscReal   hz    = PetscRealPart(pn[0].h) / (zm - 1);
1144c4762a1bSJed Brown             const PetscScalar diagu = 2 * etabase / thi->rhog * (hx * hy / hz + hx * hz / hy + 4 * hy * hz / hx), diagv = 2 * etabase / thi->rhog * (hx * hy / hz + 4 * hx * hz / hy + hy * hz / hx);
1145c4762a1bSJed Brown             Ke[0][0] = thi->dirichlet_scale * diagu;
1146c4762a1bSJed Brown             Ke[1][1] = thi->dirichlet_scale * diagv;
1147c4762a1bSJed Brown           } else {
1148c4762a1bSJed Brown             for (q = 0; q < 4; q++) {
1149c4762a1bSJed Brown               const PetscReal jw = 0.25 * hx * hy / thi->rhog, *phi = QuadQInterp[q];
1150c4762a1bSJed Brown               PetscScalar     u = 0, v = 0, rbeta2 = 0;
1151c4762a1bSJed Brown               PetscReal       beta2, dbeta2;
1152c4762a1bSJed Brown               for (l = 0; l < 4; l++) {
1153c4762a1bSJed Brown                 u += phi[l] * n[l].u;
1154c4762a1bSJed Brown                 v += phi[l] * n[l].v;
1155c4762a1bSJed Brown                 rbeta2 += phi[l] * pn[l].beta2;
1156c4762a1bSJed Brown               }
1157c4762a1bSJed Brown               THIFriction(thi, PetscRealPart(rbeta2), PetscRealPart(u * u + v * v) / 2, &beta2, &dbeta2);
1158c4762a1bSJed Brown               for (l = 0; l < 4; l++) {
1159c4762a1bSJed Brown                 const PetscReal pp = phi[l];
1160c4762a1bSJed Brown                 for (ll = 0; ll < 4; ll++) {
1161c4762a1bSJed Brown                   const PetscReal ppl = phi[ll];
1162c4762a1bSJed Brown                   Ke[l * 2 + 0][ll * 2 + 0] += pp * jw * beta2 * ppl + pp * jw * dbeta2 * u * u * ppl;
1163c4762a1bSJed Brown                   Ke[l * 2 + 0][ll * 2 + 1] += pp * jw * dbeta2 * u * v * ppl;
1164c4762a1bSJed Brown                   Ke[l * 2 + 1][ll * 2 + 0] += pp * jw * dbeta2 * v * u * ppl;
1165c4762a1bSJed Brown                   Ke[l * 2 + 1][ll * 2 + 1] += pp * jw * beta2 * ppl + pp * jw * dbeta2 * v * v * ppl;
1166c4762a1bSJed Brown                 }
1167c4762a1bSJed Brown               }
1168c4762a1bSJed Brown             }
1169c4762a1bSJed Brown           }
1170c4762a1bSJed Brown         }
1171c4762a1bSJed Brown         {
11729371c9d4SSatish Balay           const MatStencil rc[8] = {
11739371c9d4SSatish Balay             {i,     j,     k,     0},
11749371c9d4SSatish Balay             {i + 1, j,     k,     0},
11759371c9d4SSatish Balay             {i + 1, j + 1, k,     0},
11769371c9d4SSatish Balay             {i,     j + 1, k,     0},
11779371c9d4SSatish Balay             {i,     j,     k + 1, 0},
11789371c9d4SSatish Balay             {i + 1, j,     k + 1, 0},
11799371c9d4SSatish Balay             {i + 1, j + 1, k + 1, 0},
11809371c9d4SSatish Balay             {i,     j + 1, k + 1, 0}
11819371c9d4SSatish Balay           };
1182c4762a1bSJed Brown           if (amode == THIASSEMBLY_TRIDIAGONAL) {
1183c4762a1bSJed Brown             for (l = 0; l < 4; l++) { /* Copy out each of the blocks, discarding horizontal coupling */
1184c4762a1bSJed Brown               const PetscInt   l4     = l + 4;
11859371c9d4SSatish Balay               const MatStencil rcl[2] = {
11869371c9d4SSatish Balay                 {rc[l].k,  rc[l].j,  rc[l].i,  0},
11879371c9d4SSatish Balay                 {rc[l4].k, rc[l4].j, rc[l4].i, 0}
11889371c9d4SSatish Balay               };
1189*beceaeb6SBarry Smith #if defined(COMPUTE_LOWER_TRIANGULAR)
11909371c9d4SSatish Balay               const PetscScalar Kel[4][4] = {
11919371c9d4SSatish Balay                 {Ke[2 * l + 0][2 * l + 0],  Ke[2 * l + 0][2 * l + 1],  Ke[2 * l + 0][2 * l4 + 0],  Ke[2 * l + 0][2 * l4 + 1] },
1192c4762a1bSJed Brown                 {Ke[2 * l + 1][2 * l + 0],  Ke[2 * l + 1][2 * l + 1],  Ke[2 * l + 1][2 * l4 + 0],  Ke[2 * l + 1][2 * l4 + 1] },
1193c4762a1bSJed Brown                 {Ke[2 * l4 + 0][2 * l + 0], Ke[2 * l4 + 0][2 * l + 1], Ke[2 * l4 + 0][2 * l4 + 0], Ke[2 * l4 + 0][2 * l4 + 1]},
11949371c9d4SSatish Balay                 {Ke[2 * l4 + 1][2 * l + 0], Ke[2 * l4 + 1][2 * l + 1], Ke[2 * l4 + 1][2 * l4 + 0], Ke[2 * l4 + 1][2 * l4 + 1]}
11959371c9d4SSatish Balay               };
1196c4762a1bSJed Brown #else
1197c4762a1bSJed Brown               /* Same as above except for the lower-left block */
11989371c9d4SSatish Balay               const PetscScalar Kel[4][4] = {
11999371c9d4SSatish Balay                 {Ke[2 * l + 0][2 * l + 0],  Ke[2 * l + 0][2 * l + 1],  Ke[2 * l + 0][2 * l4 + 0],  Ke[2 * l + 0][2 * l4 + 1] },
1200c4762a1bSJed Brown                 {Ke[2 * l + 1][2 * l + 0],  Ke[2 * l + 1][2 * l + 1],  Ke[2 * l + 1][2 * l4 + 0],  Ke[2 * l + 1][2 * l4 + 1] },
1201c4762a1bSJed Brown                 {Ke[2 * l + 0][2 * l4 + 0], Ke[2 * l + 1][2 * l4 + 0], Ke[2 * l4 + 0][2 * l4 + 0], Ke[2 * l4 + 0][2 * l4 + 1]},
12029371c9d4SSatish Balay                 {Ke[2 * l + 0][2 * l4 + 1], Ke[2 * l + 1][2 * l4 + 1], Ke[2 * l4 + 1][2 * l4 + 0], Ke[2 * l4 + 1][2 * l4 + 1]}
12039371c9d4SSatish Balay               };
1204c4762a1bSJed Brown #endif
12059566063dSJacob Faibussowitsch               PetscCall(MatSetValuesBlockedStencil(B, 2, rcl, 2, rcl, &Kel[0][0], ADD_VALUES));
1206c4762a1bSJed Brown             }
1207c4762a1bSJed Brown           } else {
1208*beceaeb6SBarry Smith #if !defined(COMPUTE_LOWER_TRIANGULAR) /* fill in lower-triangular part, this is really cheap compared to computing the entries */
1209c4762a1bSJed Brown             for (l = 0; l < 8; l++) {
1210c4762a1bSJed Brown               for (ll = l + 1; ll < 8; ll++) {
1211c4762a1bSJed Brown                 Ke[ll * 2 + 0][l * 2 + 0] = Ke[l * 2 + 0][ll * 2 + 0];
1212c4762a1bSJed Brown                 Ke[ll * 2 + 1][l * 2 + 0] = Ke[l * 2 + 0][ll * 2 + 1];
1213c4762a1bSJed Brown                 Ke[ll * 2 + 0][l * 2 + 1] = Ke[l * 2 + 1][ll * 2 + 0];
1214c4762a1bSJed Brown                 Ke[ll * 2 + 1][l * 2 + 1] = Ke[l * 2 + 1][ll * 2 + 1];
1215c4762a1bSJed Brown               }
1216c4762a1bSJed Brown             }
1217c4762a1bSJed Brown #endif
12189566063dSJacob Faibussowitsch             PetscCall(MatSetValuesBlockedStencil(B, 8, rc, 8, rc, &Ke[0][0], ADD_VALUES));
1219c4762a1bSJed Brown           }
1220c4762a1bSJed Brown         }
1221c4762a1bSJed Brown       }
1222c4762a1bSJed Brown     }
1223c4762a1bSJed Brown   }
12249566063dSJacob Faibussowitsch   PetscCall(THIDARestorePrm(info->da, &prm));
1225c4762a1bSJed Brown 
12269566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
12279566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
12289566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_SYMMETRIC, PETSC_TRUE));
12299566063dSJacob Faibussowitsch   if (thi->verbose) PetscCall(THIMatrixStatistics(thi, B, PETSC_VIEWER_STDOUT_WORLD));
12303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1231c4762a1bSJed Brown }
1232c4762a1bSJed Brown 
1233d71ae5a4SJacob Faibussowitsch static PetscErrorCode THIJacobianLocal_3D_Full(DMDALocalInfo *info, Node ***x, Mat A, Mat B, THI thi)
1234d71ae5a4SJacob Faibussowitsch {
1235c4762a1bSJed Brown   PetscFunctionBeginUser;
12369566063dSJacob Faibussowitsch   PetscCall(THIJacobianLocal_3D(info, x, B, thi, THIASSEMBLY_FULL));
12373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1238c4762a1bSJed Brown }
1239c4762a1bSJed Brown 
1240d71ae5a4SJacob Faibussowitsch static PetscErrorCode THIJacobianLocal_3D_Tridiagonal(DMDALocalInfo *info, Node ***x, Mat A, Mat B, THI thi)
1241d71ae5a4SJacob Faibussowitsch {
1242c4762a1bSJed Brown   PetscFunctionBeginUser;
12439566063dSJacob Faibussowitsch   PetscCall(THIJacobianLocal_3D(info, x, B, thi, THIASSEMBLY_TRIDIAGONAL));
12443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1245c4762a1bSJed Brown }
1246c4762a1bSJed Brown 
1247d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMRefineHierarchy_THI(DM dac0, PetscInt nlevels, DM hierarchy[])
1248d71ae5a4SJacob Faibussowitsch {
1249c4762a1bSJed Brown   THI             thi;
1250c4762a1bSJed Brown   PetscInt        dim, M, N, m, n, s, dof;
1251c4762a1bSJed Brown   DM              dac, daf;
1252c4762a1bSJed Brown   DMDAStencilType st;
1253c4762a1bSJed Brown   DM_DA          *ddf, *ddc;
1254c4762a1bSJed Brown 
1255c4762a1bSJed Brown   PetscFunctionBeginUser;
12569566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)dac0, "THI", (PetscObject *)&thi));
125728b400f6SJacob Faibussowitsch   PetscCheck(thi, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot refine this DMDA, missing composed THI instance");
1258c4762a1bSJed Brown   if (nlevels > 1) {
12599566063dSJacob Faibussowitsch     PetscCall(DMRefineHierarchy(dac0, nlevels - 1, hierarchy));
1260c4762a1bSJed Brown     dac = hierarchy[nlevels - 2];
1261c4762a1bSJed Brown   } else {
1262c4762a1bSJed Brown     dac = dac0;
1263c4762a1bSJed Brown   }
12649566063dSJacob Faibussowitsch   PetscCall(DMDAGetInfo(dac, &dim, &N, &M, 0, &n, &m, 0, &dof, &s, 0, 0, 0, &st));
1265e00437b9SBarry Smith   PetscCheck(dim == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "This function can only refine 2D DMDAs");
1266c4762a1bSJed Brown 
1267c4762a1bSJed Brown   /* Creates a 3D DMDA with the same map-plane layout as the 2D one, with contiguous columns */
12689566063dSJacob Faibussowitsch   PetscCall(DMDACreate3d(PetscObjectComm((PetscObject)dac), DM_BOUNDARY_NONE, DM_BOUNDARY_PERIODIC, DM_BOUNDARY_PERIODIC, st, thi->zlevels, N, M, 1, n, m, dof, s, NULL, NULL, NULL, &daf));
12699566063dSJacob Faibussowitsch   PetscCall(DMSetUp(daf));
1270c4762a1bSJed Brown 
1271c4762a1bSJed Brown   daf->ops->creatematrix        = dac->ops->creatematrix;
1272c4762a1bSJed Brown   daf->ops->createinterpolation = dac->ops->createinterpolation;
1273c4762a1bSJed Brown   daf->ops->getcoloring         = dac->ops->getcoloring;
1274c4762a1bSJed Brown   ddf                           = (DM_DA *)daf->data;
1275c4762a1bSJed Brown   ddc                           = (DM_DA *)dac->data;
1276c4762a1bSJed Brown   ddf->interptype               = ddc->interptype;
1277c4762a1bSJed Brown 
12789566063dSJacob Faibussowitsch   PetscCall(DMDASetFieldName(daf, 0, "x-velocity"));
12799566063dSJacob Faibussowitsch   PetscCall(DMDASetFieldName(daf, 1, "y-velocity"));
1280c4762a1bSJed Brown 
1281c4762a1bSJed Brown   hierarchy[nlevels - 1] = daf;
12823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1283c4762a1bSJed Brown }
1284c4762a1bSJed Brown 
1285d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMCreateInterpolation_DA_THI(DM dac, DM daf, Mat *A, Vec *scale)
1286d71ae5a4SJacob Faibussowitsch {
1287c4762a1bSJed Brown   PetscInt dim;
1288c4762a1bSJed Brown 
1289c4762a1bSJed Brown   PetscFunctionBeginUser;
1290c4762a1bSJed Brown   PetscValidHeaderSpecific(dac, DM_CLASSID, 1);
1291c4762a1bSJed Brown   PetscValidHeaderSpecific(daf, DM_CLASSID, 2);
12924f572ea9SToby Isaac   PetscAssertPointer(A, 3);
12934f572ea9SToby Isaac   if (scale) PetscAssertPointer(scale, 4);
12949566063dSJacob Faibussowitsch   PetscCall(DMDAGetInfo(daf, &dim, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0));
1295c4762a1bSJed Brown   if (dim == 2) {
1296c4762a1bSJed Brown     /* We are in the 2D problem and use normal DMDA interpolation */
12979566063dSJacob Faibussowitsch     PetscCall(DMCreateInterpolation(dac, daf, A, scale));
1298c4762a1bSJed Brown   } else {
1299c4762a1bSJed Brown     PetscInt i, j, k, xs, ys, zs, xm, ym, zm, mx, my, mz, rstart, cstart;
1300c4762a1bSJed Brown     Mat      B;
1301c4762a1bSJed Brown 
13029566063dSJacob Faibussowitsch     PetscCall(DMDAGetInfo(daf, 0, &mz, &my, &mx, 0, 0, 0, 0, 0, 0, 0, 0, 0));
13039566063dSJacob Faibussowitsch     PetscCall(DMDAGetCorners(daf, &zs, &ys, &xs, &zm, &ym, &xm));
130428b400f6SJacob Faibussowitsch     PetscCheck(!zs, PETSC_COMM_SELF, PETSC_ERR_PLIB, "unexpected");
13059566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)daf), &B));
13069566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, xm * ym * zm, xm * ym, mx * my * mz, mx * my));
1307c4762a1bSJed Brown 
13089566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATAIJ));
13099566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(B, 1, NULL));
13109566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 1, NULL, 0, NULL));
13119566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(B, &rstart, NULL));
13129566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRangeColumn(B, &cstart, NULL));
1313c4762a1bSJed Brown     for (i = xs; i < xs + xm; i++) {
1314c4762a1bSJed Brown       for (j = ys; j < ys + ym; j++) {
1315c4762a1bSJed Brown         for (k = zs; k < zs + zm; k++) {
1316c4762a1bSJed Brown           PetscInt    i2 = i * ym + j, i3 = i2 * zm + k;
1317c4762a1bSJed Brown           PetscScalar val = ((k == 0 || k == mz - 1) ? 0.5 : 1.) / (mz - 1.); /* Integration using trapezoid rule */
13189566063dSJacob Faibussowitsch           PetscCall(MatSetValue(B, cstart + i3, rstart + i2, val, INSERT_VALUES));
1319c4762a1bSJed Brown         }
1320c4762a1bSJed Brown       }
1321c4762a1bSJed Brown     }
13229566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
13239566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
13249566063dSJacob Faibussowitsch     PetscCall(MatCreateMAIJ(B, sizeof(Node) / sizeof(PetscScalar), A));
13259566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&B));
1326c4762a1bSJed Brown   }
13273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1328c4762a1bSJed Brown }
1329c4762a1bSJed Brown 
1330d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMCreateMatrix_THI_Tridiagonal(DM da, Mat *J)
1331d71ae5a4SJacob Faibussowitsch {
1332c4762a1bSJed Brown   Mat                    A;
1333c4762a1bSJed Brown   PetscInt               xm, ym, zm, dim, dof = 2, starts[3], dims[3];
1334c4762a1bSJed Brown   ISLocalToGlobalMapping ltog;
1335c4762a1bSJed Brown 
1336c4762a1bSJed Brown   PetscFunctionBeginUser;
13379566063dSJacob Faibussowitsch   PetscCall(DMDAGetInfo(da, &dim, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0));
1338e00437b9SBarry Smith   PetscCheck(dim == 3, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Expected DMDA to be 3D");
13399566063dSJacob Faibussowitsch   PetscCall(DMDAGetCorners(da, 0, 0, 0, &zm, &ym, &xm));
13409566063dSJacob Faibussowitsch   PetscCall(DMGetLocalToGlobalMapping(da, &ltog));
13419566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)da), &A));
13429566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(A, dof * xm * ym * zm, dof * xm * ym * zm, PETSC_DETERMINE, PETSC_DETERMINE));
13439566063dSJacob Faibussowitsch   PetscCall(MatSetType(A, da->mattype));
13449566063dSJacob Faibussowitsch   PetscCall(MatSetFromOptions(A));
13459566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(A, 3 * 2, NULL));
13469566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(A, 3 * 2, NULL, 0, NULL));
13479566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(A, 2, 3, NULL));
13489566063dSJacob Faibussowitsch   PetscCall(MatMPIBAIJSetPreallocation(A, 2, 3, NULL, 0, NULL));
13499566063dSJacob Faibussowitsch   PetscCall(MatSeqSBAIJSetPreallocation(A, 2, 2, NULL));
13509566063dSJacob Faibussowitsch   PetscCall(MatMPISBAIJSetPreallocation(A, 2, 2, NULL, 0, NULL));
13519566063dSJacob Faibussowitsch   PetscCall(MatSetLocalToGlobalMapping(A, ltog, ltog));
13529566063dSJacob Faibussowitsch   PetscCall(DMDAGetGhostCorners(da, &starts[0], &starts[1], &starts[2], &dims[0], &dims[1], &dims[2]));
13539566063dSJacob Faibussowitsch   PetscCall(MatSetStencil(A, dim, dims, starts, dof));
1354c4762a1bSJed Brown   *J = A;
13553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1356c4762a1bSJed Brown }
1357c4762a1bSJed Brown 
1358d71ae5a4SJacob Faibussowitsch static PetscErrorCode THIDAVecView_VTK_XML(THI thi, DM da, Vec X, const char filename[])
1359d71ae5a4SJacob Faibussowitsch {
1360c4762a1bSJed Brown   const PetscInt     dof   = 2;
1361c4762a1bSJed Brown   Units              units = thi->units;
1362c4762a1bSJed Brown   MPI_Comm           comm;
1363c4762a1bSJed Brown   PetscViewer        viewer;
1364c4762a1bSJed Brown   PetscMPIInt        rank, size, tag, nn, nmax;
13656497c311SBarry Smith   PetscInt           mx, my, mz, range[6];
1366c4762a1bSJed Brown   const PetscScalar *x;
1367c4762a1bSJed Brown 
1368c4762a1bSJed Brown   PetscFunctionBeginUser;
13699566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)thi, &comm));
13709566063dSJacob Faibussowitsch   PetscCall(DMDAGetInfo(da, 0, &mz, &my, &mx, 0, 0, 0, 0, 0, 0, 0, 0, 0));
13719566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
13729566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
13739566063dSJacob Faibussowitsch   PetscCall(PetscViewerASCIIOpen(comm, filename, &viewer));
13749566063dSJacob Faibussowitsch   PetscCall(PetscViewerASCIIPrintf(viewer, "<VTKFile type=\"StructuredGrid\" version=\"0.1\" byte_order=\"LittleEndian\">\n"));
137563a3b9bcSJacob Faibussowitsch   PetscCall(PetscViewerASCIIPrintf(viewer, "  <StructuredGrid WholeExtent=\"%d %" PetscInt_FMT " %d %" PetscInt_FMT " %d %" PetscInt_FMT "\">\n", 0, mz - 1, 0, my - 1, 0, mx - 1));
1376c4762a1bSJed Brown 
13779566063dSJacob Faibussowitsch   PetscCall(DMDAGetCorners(da, range, range + 1, range + 2, range + 3, range + 4, range + 5));
13789566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(range[3] * range[4] * range[5] * dof, &nn));
13799566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Reduce(&nn, &nmax, 1, MPI_INT, MPI_MAX, 0, comm));
1380c4762a1bSJed Brown   tag = ((PetscObject)viewer)->tag;
13819566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(X, &x));
1382dd400576SPatrick Sanan   if (rank == 0) {
1383c4762a1bSJed Brown     PetscScalar *array;
13849566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nmax, &array));
13856497c311SBarry Smith     for (PetscMPIInt r = 0; r < size; r++) {
1386c4762a1bSJed Brown       PetscInt           i, j, k, xs, xm, ys, ym, zs, zm;
1387c4762a1bSJed Brown       const PetscScalar *ptr;
1388c4762a1bSJed Brown       MPI_Status         status;
13896497c311SBarry Smith       if (r) PetscCallMPI(MPIU_Recv(range, 6, MPIU_INT, r, tag, comm, MPI_STATUS_IGNORE));
13909371c9d4SSatish Balay       zs = range[0];
13919371c9d4SSatish Balay       ys = range[1];
13929371c9d4SSatish Balay       xs = range[2];
13939371c9d4SSatish Balay       zm = range[3];
13949371c9d4SSatish Balay       ym = range[4];
13959371c9d4SSatish Balay       xm = range[5];
1396e00437b9SBarry Smith       PetscCheck(xm * ym * zm * dof <= nmax, PETSC_COMM_SELF, PETSC_ERR_PLIB, "should not happen");
1397c4762a1bSJed Brown       if (r) {
13986497c311SBarry Smith         PetscCallMPI(MPIU_Recv(array, nmax, MPIU_SCALAR, r, tag, comm, &status));
13999566063dSJacob Faibussowitsch         PetscCallMPI(MPI_Get_count(&status, MPIU_SCALAR, &nn));
1400e00437b9SBarry Smith         PetscCheck(nn == xm * ym * zm * dof, PETSC_COMM_SELF, PETSC_ERR_PLIB, "should not happen");
1401c4762a1bSJed Brown         ptr = array;
1402c4762a1bSJed Brown       } else ptr = x;
140363a3b9bcSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "    <Piece Extent=\"%" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT "\">\n", zs, zs + zm - 1, ys, ys + ym - 1, xs, xs + xm - 1));
1404c4762a1bSJed Brown 
14059566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "      <Points>\n"));
14069566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "        <DataArray type=\"Float32\" NumberOfComponents=\"3\" format=\"ascii\">\n"));
1407c4762a1bSJed Brown       for (i = xs; i < xs + xm; i++) {
1408c4762a1bSJed Brown         for (j = ys; j < ys + ym; j++) {
1409c4762a1bSJed Brown           for (k = zs; k < zs + zm; k++) {
1410c4762a1bSJed Brown             PrmNode   p;
1411c4762a1bSJed Brown             PetscReal xx = thi->Lx * i / mx, yy = thi->Ly * j / my, zz;
1412c4762a1bSJed Brown             thi->initialize(thi, xx, yy, &p);
1413c4762a1bSJed Brown             zz = PetscRealPart(p.b) + PetscRealPart(p.h) * k / (mz - 1);
14149566063dSJacob Faibussowitsch             PetscCall(PetscViewerASCIIPrintf(viewer, "%f %f %f\n", (double)xx, (double)yy, (double)zz));
1415c4762a1bSJed Brown           }
1416c4762a1bSJed Brown         }
1417c4762a1bSJed Brown       }
14189566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "        </DataArray>\n"));
14199566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "      </Points>\n"));
1420c4762a1bSJed Brown 
14219566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "      <PointData>\n"));
14229566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "        <DataArray type=\"Float32\" Name=\"velocity\" NumberOfComponents=\"3\" format=\"ascii\">\n"));
142348a46eb9SPierre Jolivet       for (i = 0; i < nn; i += dof) PetscCall(PetscViewerASCIIPrintf(viewer, "%f %f %f\n", (double)(PetscRealPart(ptr[i]) * units->year / units->meter), (double)(PetscRealPart(ptr[i + 1]) * units->year / units->meter), 0.0));
14249566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "        </DataArray>\n"));
1425c4762a1bSJed Brown 
14269566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "        <DataArray type=\"Int32\" Name=\"rank\" NumberOfComponents=\"1\" format=\"ascii\">\n"));
14276497c311SBarry Smith       for (i = 0; i < nn; i += dof) PetscCall(PetscViewerASCIIPrintf(viewer, "%d\n", r));
14289566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "        </DataArray>\n"));
14299566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "      </PointData>\n"));
1430c4762a1bSJed Brown 
14319566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "    </Piece>\n"));
1432c4762a1bSJed Brown     }
14339566063dSJacob Faibussowitsch     PetscCall(PetscFree(array));
1434c4762a1bSJed Brown   } else {
14356497c311SBarry Smith     PetscCallMPI(MPIU_Send(range, 6, MPIU_INT, 0, tag, comm));
14366497c311SBarry Smith     PetscCallMPI(MPIU_Send((PetscScalar *)x, nn, MPIU_SCALAR, 0, tag, comm));
1437c4762a1bSJed Brown   }
14389566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(X, &x));
14399566063dSJacob Faibussowitsch   PetscCall(PetscViewerASCIIPrintf(viewer, "  </StructuredGrid>\n"));
14409566063dSJacob Faibussowitsch   PetscCall(PetscViewerASCIIPrintf(viewer, "</VTKFile>\n"));
14419566063dSJacob Faibussowitsch   PetscCall(PetscViewerDestroy(&viewer));
14423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1443c4762a1bSJed Brown }
1444c4762a1bSJed Brown 
1445d71ae5a4SJacob Faibussowitsch int main(int argc, char *argv[])
1446d71ae5a4SJacob Faibussowitsch {
1447c4762a1bSJed Brown   MPI_Comm comm;
1448c4762a1bSJed Brown   THI      thi;
1449c4762a1bSJed Brown   DM       da;
1450c4762a1bSJed Brown   SNES     snes;
1451c4762a1bSJed Brown 
1452327415f7SBarry Smith   PetscFunctionBeginUser;
14539566063dSJacob Faibussowitsch   PetscCall(PetscInitialize(&argc, &argv, 0, help));
1454c4762a1bSJed Brown   comm = PETSC_COMM_WORLD;
1455c4762a1bSJed Brown 
14569566063dSJacob Faibussowitsch   PetscCall(THICreate(comm, &thi));
1457c4762a1bSJed Brown   {
1458c4762a1bSJed Brown     PetscInt M = 3, N = 3, P = 2;
1459d0609cedSBarry Smith     PetscOptionsBegin(comm, NULL, "Grid resolution options", "");
1460c4762a1bSJed Brown     {
14619566063dSJacob Faibussowitsch       PetscCall(PetscOptionsInt("-M", "Number of elements in x-direction on coarse level", "", M, &M, NULL));
1462c4762a1bSJed Brown       N = M;
14639566063dSJacob Faibussowitsch       PetscCall(PetscOptionsInt("-N", "Number of elements in y-direction on coarse level (if different from M)", "", N, &N, NULL));
1464c4762a1bSJed Brown       if (thi->coarse2d) {
14659566063dSJacob Faibussowitsch         PetscCall(PetscOptionsInt("-zlevels", "Number of elements in z-direction on fine level", "", thi->zlevels, &thi->zlevels, NULL));
1466c4762a1bSJed Brown       } else {
14679566063dSJacob Faibussowitsch         PetscCall(PetscOptionsInt("-P", "Number of elements in z-direction on coarse level", "", P, &P, NULL));
1468c4762a1bSJed Brown       }
1469c4762a1bSJed Brown     }
1470d0609cedSBarry Smith     PetscOptionsEnd();
1471c4762a1bSJed Brown     if (thi->coarse2d) {
14729566063dSJacob Faibussowitsch       PetscCall(DMDACreate2d(comm, DM_BOUNDARY_PERIODIC, DM_BOUNDARY_PERIODIC, DMDA_STENCIL_BOX, N, M, PETSC_DETERMINE, PETSC_DETERMINE, sizeof(Node) / sizeof(PetscScalar), 1, 0, 0, &da));
14739566063dSJacob Faibussowitsch       PetscCall(DMSetFromOptions(da));
14749566063dSJacob Faibussowitsch       PetscCall(DMSetUp(da));
1475c4762a1bSJed Brown       da->ops->refinehierarchy     = DMRefineHierarchy_THI;
1476c4762a1bSJed Brown       da->ops->createinterpolation = DMCreateInterpolation_DA_THI;
1477c4762a1bSJed Brown 
14789566063dSJacob Faibussowitsch       PetscCall(PetscObjectCompose((PetscObject)da, "THI", (PetscObject)thi));
1479c4762a1bSJed Brown     } else {
14809566063dSJacob Faibussowitsch       PetscCall(DMDACreate3d(comm, DM_BOUNDARY_NONE, DM_BOUNDARY_PERIODIC, DM_BOUNDARY_PERIODIC, DMDA_STENCIL_BOX, P, N, M, 1, PETSC_DETERMINE, PETSC_DETERMINE, sizeof(Node) / sizeof(PetscScalar), 1, 0, 0, 0, &da));
14819566063dSJacob Faibussowitsch       PetscCall(DMSetFromOptions(da));
14829566063dSJacob Faibussowitsch       PetscCall(DMSetUp(da));
1483c4762a1bSJed Brown     }
14849566063dSJacob Faibussowitsch     PetscCall(DMDASetFieldName(da, 0, "x-velocity"));
14859566063dSJacob Faibussowitsch     PetscCall(DMDASetFieldName(da, 1, "y-velocity"));
1486c4762a1bSJed Brown   }
14879566063dSJacob Faibussowitsch   PetscCall(THISetUpDM(thi, da));
1488c4762a1bSJed Brown   if (thi->tridiagonal) da->ops->creatematrix = DMCreateMatrix_THI_Tridiagonal;
1489c4762a1bSJed Brown 
1490c4762a1bSJed Brown   { /* Set the fine level matrix type if -da_refine */
1491c4762a1bSJed Brown     PetscInt rlevel, clevel;
14929566063dSJacob Faibussowitsch     PetscCall(DMGetRefineLevel(da, &rlevel));
14939566063dSJacob Faibussowitsch     PetscCall(DMGetCoarsenLevel(da, &clevel));
14949566063dSJacob Faibussowitsch     if (rlevel - clevel > 0) PetscCall(DMSetMatType(da, thi->mattype));
1495c4762a1bSJed Brown   }
1496c4762a1bSJed Brown 
14978434afd1SBarry Smith   PetscCall(DMDASNESSetFunctionLocal(da, ADD_VALUES, (DMDASNESFunctionFn *)THIFunctionLocal, thi));
1498c4762a1bSJed Brown   if (thi->tridiagonal) {
14998434afd1SBarry Smith     PetscCall(DMDASNESSetJacobianLocal(da, (DMDASNESJacobianFn *)THIJacobianLocal_3D_Tridiagonal, thi));
1500c4762a1bSJed Brown   } else {
15018434afd1SBarry Smith     PetscCall(DMDASNESSetJacobianLocal(da, (DMDASNESJacobianFn *)THIJacobianLocal_3D_Full, thi));
1502c4762a1bSJed Brown   }
15039566063dSJacob Faibussowitsch   PetscCall(DMCoarsenHookAdd(da, DMCoarsenHook_THI, NULL, thi));
15049566063dSJacob Faibussowitsch   PetscCall(DMRefineHookAdd(da, DMRefineHook_THI, NULL, thi));
1505c4762a1bSJed Brown 
15069566063dSJacob Faibussowitsch   PetscCall(DMSetApplicationContext(da, thi));
1507c4762a1bSJed Brown 
15089566063dSJacob Faibussowitsch   PetscCall(SNESCreate(comm, &snes));
15099566063dSJacob Faibussowitsch   PetscCall(SNESSetDM(snes, da));
15109566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&da));
15119566063dSJacob Faibussowitsch   PetscCall(SNESSetComputeInitialGuess(snes, THIInitial, NULL));
15129566063dSJacob Faibussowitsch   PetscCall(SNESSetFromOptions(snes));
1513c4762a1bSJed Brown 
15149566063dSJacob Faibussowitsch   PetscCall(SNESSolve(snes, NULL, NULL));
1515c4762a1bSJed Brown 
15169566063dSJacob Faibussowitsch   PetscCall(THISolveStatistics(thi, snes, 0, "Full"));
1517c4762a1bSJed Brown 
1518c4762a1bSJed Brown   {
1519c4762a1bSJed Brown     PetscBool flg;
1520c4762a1bSJed Brown     char      filename[PETSC_MAX_PATH_LEN] = "";
15219566063dSJacob Faibussowitsch     PetscCall(PetscOptionsGetString(NULL, NULL, "-o", filename, sizeof(filename), &flg));
1522c4762a1bSJed Brown     if (flg) {
1523c4762a1bSJed Brown       Vec X;
1524c4762a1bSJed Brown       DM  dm;
15259566063dSJacob Faibussowitsch       PetscCall(SNESGetSolution(snes, &X));
15269566063dSJacob Faibussowitsch       PetscCall(SNESGetDM(snes, &dm));
15279566063dSJacob Faibussowitsch       PetscCall(THIDAVecView_VTK_XML(thi, dm, X, filename));
1528c4762a1bSJed Brown     }
1529c4762a1bSJed Brown   }
1530c4762a1bSJed Brown 
15319566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&da));
15329566063dSJacob Faibussowitsch   PetscCall(SNESDestroy(&snes));
15339566063dSJacob Faibussowitsch   PetscCall(THIDestroy(&thi));
15349566063dSJacob Faibussowitsch   PetscCall(PetscFinalize());
1535b122ec5aSJacob Faibussowitsch   return 0;
1536c4762a1bSJed Brown }
1537c4762a1bSJed Brown 
1538c4762a1bSJed Brown /*TEST
1539c4762a1bSJed Brown 
1540c4762a1bSJed Brown    build:
1541f56ea12dSJed Brown       requires: !single
1542c4762a1bSJed Brown 
1543c4762a1bSJed Brown    test:
1544c4762a1bSJed Brown       args: -M 6 -P 4 -da_refine 1 -snes_monitor_short -snes_converged_reason -ksp_monitor_short -ksp_converged_reason -thi_mat_type sbaij -ksp_type fgmres -pc_type mg -pc_mg_type full -mg_levels_ksp_type gmres -mg_levels_ksp_max_it 1 -mg_levels_pc_type icc
1545c4762a1bSJed Brown 
1546c4762a1bSJed Brown    test:
1547c4762a1bSJed Brown       suffix: 2
1548c4762a1bSJed Brown       nsize: 2
154977e5a1f9SBarry Smith       args: -M 6 -P 4 -thi_hom z -snes_monitor_short -snes_converged_reason -ksp_monitor_short -ksp_converged_reason -thi_mat_type sbaij -ksp_type fgmres -pc_type mg -pc_mg_type full -mg_levels_ksp_type gmres -mg_levels_ksp_max_it 1 -mg_levels_pc_type asm -mg_levels_pc_asm_blocks 6 -mg_levels_0_pc_type redundant -snes_grid_sequence 1 -mat_partitioning_type current -ksp_atol 0
1550c4762a1bSJed Brown 
1551c4762a1bSJed Brown    test:
1552c4762a1bSJed Brown       suffix: 3
1553c4762a1bSJed Brown       nsize: 3
1554c4762a1bSJed Brown       args: -M 7 -P 4 -thi_hom z -da_refine 1 -snes_monitor_short -snes_converged_reason -ksp_monitor_short -ksp_converged_reason -thi_mat_type baij -ksp_type fgmres -pc_type mg -pc_mg_type full -mg_levels_pc_asm_type restrict -mg_levels_pc_type asm -mg_levels_pc_asm_blocks 9 -mg_levels_ksp_type gmres -mg_levels_ksp_max_it 1 -mat_partitioning_type current
1555c4762a1bSJed Brown 
1556c4762a1bSJed Brown    test:
1557c4762a1bSJed Brown       suffix: 4
1558c4762a1bSJed Brown       nsize: 6
155977e5a1f9SBarry Smith       args: -M 4 -P 2 -da_refine_hierarchy_x 1,1,3 -da_refine_hierarchy_y 2,2,1 -da_refine_hierarchy_z 2,2,1 -snes_grid_sequence 3 -ksp_converged_reason -ksp_type fgmres -ksp_rtol 1e-2 -pc_type mg -mg_levels_ksp_type gmres -mg_levels_ksp_max_it 1 -mg_levels_pc_type bjacobi -mg_levels_1_sub_pc_type cholesky -pc_mg_type multiplicative -snes_converged_reason -snes_stol 1e-12 -thi_L 80e3 -thi_alpha 0.05 -thi_friction_m 1 -thi_hom x -snes_view -mg_levels_0_pc_type redundant -mg_levels_0_ksp_type preonly -ksp_atol 0
1560c4762a1bSJed Brown 
1561c4762a1bSJed Brown    test:
1562c4762a1bSJed Brown       suffix: 5
1563c4762a1bSJed Brown       nsize: 6
1564c4762a1bSJed Brown       args: -M 12 -P 5 -snes_monitor_short -ksp_converged_reason -pc_type asm -pc_asm_type restrict -dm_mat_type {{aij baij sbaij}}
1565c4762a1bSJed Brown 
1566c4762a1bSJed Brown TEST*/
1567