1c4762a1bSJed Brown static const char help[] = "Toy hydrostatic ice flow with multigrid in 3D.\n\ 2c4762a1bSJed Brown \n\ 3c4762a1bSJed Brown Solves the hydrostatic (aka Blatter/Pattyn/First Order) equations for ice sheet flow\n\ 4c4762a1bSJed Brown using multigrid. The ice uses a power-law rheology with \"Glen\" exponent 3 (corresponds\n\ 5c4762a1bSJed Brown to p=4/3 in a p-Laplacian). The focus is on ISMIP-HOM experiments which assume periodic\n\ 6c4762a1bSJed Brown boundary conditions in the x- and y-directions.\n\ 7c4762a1bSJed Brown \n\ 8c4762a1bSJed Brown Equations are rescaled so that the domain size and solution are O(1), details of this scaling\n\ 9c4762a1bSJed Brown can be controlled by the options -units_meter, -units_second, and -units_kilogram.\n\ 10c4762a1bSJed Brown \n\ 11c4762a1bSJed Brown A VTK StructuredGrid output file can be written using the option -o filename.vts\n\ 12c4762a1bSJed Brown \n\n"; 13c4762a1bSJed Brown 14c4762a1bSJed Brown /* 15c4762a1bSJed Brown The equations for horizontal velocity (u,v) are 16c4762a1bSJed Brown 17c4762a1bSJed Brown - [eta (4 u_x + 2 v_y)]_x - [eta (u_y + v_x)]_y - [eta u_z]_z + rho g s_x = 0 18c4762a1bSJed Brown - [eta (4 v_y + 2 u_x)]_y - [eta (u_y + v_x)]_x - [eta v_z]_z + rho g s_y = 0 19c4762a1bSJed Brown 20c4762a1bSJed Brown where 21c4762a1bSJed Brown 22c4762a1bSJed Brown eta = B/2 (epsilon + gamma)^((p-2)/2) 23c4762a1bSJed Brown 24c4762a1bSJed Brown is the nonlinear effective viscosity with regularization epsilon and hardness parameter B, 25c4762a1bSJed Brown written in terms of the second invariant 26c4762a1bSJed Brown 27c4762a1bSJed Brown gamma = u_x^2 + v_y^2 + u_x v_y + (1/4) (u_y + v_x)^2 + (1/4) u_z^2 + (1/4) v_z^2 28c4762a1bSJed Brown 29c4762a1bSJed Brown The surface boundary conditions are the natural conditions. The basal boundary conditions 30c4762a1bSJed Brown are either no-slip, or Navier (linear) slip with spatially variant friction coefficient beta^2. 31c4762a1bSJed Brown 32c4762a1bSJed Brown In the code, the equations for (u,v) are multiplied through by 1/(rho g) so that residuals are O(1). 33c4762a1bSJed Brown 34c4762a1bSJed Brown The discretization is Q1 finite elements, managed by a DMDA. The grid is never distorted in the 35c4762a1bSJed Brown map (x,y) plane, but the bed and surface may be bumpy. This is handled as usual in FEM, through 36c4762a1bSJed Brown the Jacobian of the coordinate transformation from a reference element to the physical element. 37c4762a1bSJed Brown 38c4762a1bSJed Brown Since ice-flow is tightly coupled in the z-direction (within columns), the DMDA is managed 39c4762a1bSJed Brown specially so that columns are never distributed, and are always contiguous in memory. 40c4762a1bSJed Brown This amounts to reversing the meaning of X,Y,Z compared to the DMDA's internal interpretation, 41c4762a1bSJed Brown and then indexing as vec[i][j][k]. The exotic coarse spaces require 2D DMDAs which are made to 42c4762a1bSJed Brown use compatible domain decomposition relative to the 3D DMDAs. 43c4762a1bSJed Brown 44c4762a1bSJed Brown There are two compile-time options: 45c4762a1bSJed Brown 46c4762a1bSJed Brown NO_SSE2: 47c4762a1bSJed Brown If the host supports SSE2, we use integration code that has been vectorized with SSE2 48c4762a1bSJed Brown intrinsics, unless this macro is defined. The intrinsics speed up integration by about 49c4762a1bSJed Brown 30% on my architecture (P8700, gcc-4.5 snapshot). 50c4762a1bSJed Brown 51c4762a1bSJed Brown COMPUTE_LOWER_TRIANGULAR: 52c4762a1bSJed Brown The element matrices we assemble are lower-triangular so it is not necessary to compute 53c4762a1bSJed Brown all entries explicitly. If this macro is defined, the lower-triangular entries are 54c4762a1bSJed Brown computed explicitly. 55c4762a1bSJed Brown 56c4762a1bSJed Brown */ 57c4762a1bSJed Brown 58c4762a1bSJed Brown #if defined(PETSC_APPLE_FRAMEWORK) 59c4762a1bSJed Brown #import <PETSc/petscsnes.h> 60c4762a1bSJed Brown #import <PETSc/petsc/private/dmdaimpl.h> /* There is not yet a public interface to manipulate dm->ops */ 61c4762a1bSJed Brown #else 62c4762a1bSJed Brown 63c4762a1bSJed Brown #include <petscsnes.h> 64c4762a1bSJed Brown #include <petsc/private/dmdaimpl.h> /* There is not yet a public interface to manipulate dm->ops */ 65c4762a1bSJed Brown #endif 66c4762a1bSJed Brown #include <ctype.h> /* toupper() */ 67c4762a1bSJed Brown 68c4762a1bSJed Brown #if defined(__cplusplus) || defined (PETSC_HAVE_WINDOWS_COMPILERS) || defined (__PGI) 69c4762a1bSJed Brown /* c++ cannot handle [_restrict_] notation like C does */ 70c4762a1bSJed Brown #undef PETSC_RESTRICT 71c4762a1bSJed Brown #define PETSC_RESTRICT 72c4762a1bSJed Brown #endif 73c4762a1bSJed Brown 74c4762a1bSJed Brown #if defined __SSE2__ 75c4762a1bSJed Brown # include <emmintrin.h> 76c4762a1bSJed Brown #endif 77c4762a1bSJed Brown 78c4762a1bSJed Brown /* The SSE2 kernels are only for PetscScalar=double on architectures that support it */ 79c4762a1bSJed Brown #if !defined NO_SSE2 \ 80c4762a1bSJed Brown && !defined PETSC_USE_COMPLEX \ 81c4762a1bSJed Brown && !defined PETSC_USE_REAL_SINGLE \ 82c4762a1bSJed Brown && !defined PETSC_USE_REAL___FLOAT128 \ 83c4762a1bSJed Brown && !defined PETSC_USE_REAL___FP16 \ 84c4762a1bSJed Brown && defined __SSE2__ 85c4762a1bSJed Brown #define USE_SSE2_KERNELS 1 86c4762a1bSJed Brown #else 87c4762a1bSJed Brown #define USE_SSE2_KERNELS 0 88c4762a1bSJed Brown #endif 89c4762a1bSJed Brown 90c4762a1bSJed Brown static PetscClassId THI_CLASSID; 91c4762a1bSJed Brown 92c4762a1bSJed Brown typedef enum {QUAD_GAUSS,QUAD_LOBATTO} QuadratureType; 93c4762a1bSJed Brown static const char *QuadratureTypes[] = {"gauss","lobatto","QuadratureType","QUAD_",0}; 94c4762a1bSJed Brown PETSC_UNUSED static const PetscReal HexQWeights[8] = {1,1,1,1,1,1,1,1}; 95c4762a1bSJed Brown PETSC_UNUSED static const PetscReal HexQNodes[] = {-0.57735026918962573, 0.57735026918962573}; 96c4762a1bSJed Brown #define G 0.57735026918962573 97c4762a1bSJed Brown #define H (0.5*(1.+G)) 98c4762a1bSJed Brown #define L (0.5*(1.-G)) 99c4762a1bSJed Brown #define M (-0.5) 100c4762a1bSJed Brown #define P (0.5) 101c4762a1bSJed Brown /* Special quadrature: Lobatto in horizontal, Gauss in vertical */ 102c4762a1bSJed Brown static const PetscReal HexQInterp_Lobatto[8][8] = {{H,0,0,0,L,0,0,0}, 103c4762a1bSJed Brown {0,H,0,0,0,L,0,0}, 104c4762a1bSJed Brown {0,0,H,0,0,0,L,0}, 105c4762a1bSJed Brown {0,0,0,H,0,0,0,L}, 106c4762a1bSJed Brown {L,0,0,0,H,0,0,0}, 107c4762a1bSJed Brown {0,L,0,0,0,H,0,0}, 108c4762a1bSJed Brown {0,0,L,0,0,0,H,0}, 109c4762a1bSJed Brown {0,0,0,L,0,0,0,H}}; 110c4762a1bSJed Brown static const PetscReal HexQDeriv_Lobatto[8][8][3] = { 111c4762a1bSJed Brown {{M*H,M*H,M},{P*H,0,0} ,{0,0,0} ,{0,P*H,0} ,{M*L,M*L,P},{P*L,0,0} ,{0,0,0} ,{0,P*L,0} }, 112c4762a1bSJed Brown {{M*H,0,0} ,{P*H,M*H,M},{0,P*H,0} ,{0,0,0} ,{M*L,0,0} ,{P*L,M*L,P},{0,P*L,0} ,{0,0,0} }, 113c4762a1bSJed Brown {{0,0,0} ,{0,M*H,0} ,{P*H,P*H,M},{M*H,0,0} ,{0,0,0} ,{0,M*L,0} ,{P*L,P*L,P},{M*L,0,0} }, 114c4762a1bSJed Brown {{0,M*H,0} ,{0,0,0} ,{P*H,0,0} ,{M*H,P*H,M},{0,M*L,0} ,{0,0,0} ,{P*L,0,0} ,{M*L,P*L,P}}, 115c4762a1bSJed Brown {{M*L,M*L,M},{P*L,0,0} ,{0,0,0} ,{0,P*L,0} ,{M*H,M*H,P},{P*H,0,0} ,{0,0,0} ,{0,P*H,0} }, 116c4762a1bSJed Brown {{M*L,0,0} ,{P*L,M*L,M},{0,P*L,0} ,{0,0,0} ,{M*H,0,0} ,{P*H,M*H,P},{0,P*H,0} ,{0,0,0} }, 117c4762a1bSJed Brown {{0,0,0} ,{0,M*L,0} ,{P*L,P*L,M},{M*L,0,0} ,{0,0,0} ,{0,M*H,0} ,{P*H,P*H,P},{M*H,0,0} }, 118c4762a1bSJed Brown {{0,M*L,0} ,{0,0,0} ,{P*L,0,0} ,{M*L,P*L,M},{0,M*H,0} ,{0,0,0} ,{P*H,0,0} ,{M*H,P*H,P}}}; 119c4762a1bSJed Brown /* Stanndard Gauss */ 120c4762a1bSJed Brown static const PetscReal HexQInterp_Gauss[8][8] = {{H*H*H,L*H*H,L*L*H,H*L*H, H*H*L,L*H*L,L*L*L,H*L*L}, 121c4762a1bSJed Brown {L*H*H,H*H*H,H*L*H,L*L*H, L*H*L,H*H*L,H*L*L,L*L*L}, 122c4762a1bSJed Brown {L*L*H,H*L*H,H*H*H,L*H*H, L*L*L,H*L*L,H*H*L,L*H*L}, 123c4762a1bSJed Brown {H*L*H,L*L*H,L*H*H,H*H*H, H*L*L,L*L*L,L*H*L,H*H*L}, 124c4762a1bSJed Brown {H*H*L,L*H*L,L*L*L,H*L*L, H*H*H,L*H*H,L*L*H,H*L*H}, 125c4762a1bSJed Brown {L*H*L,H*H*L,H*L*L,L*L*L, L*H*H,H*H*H,H*L*H,L*L*H}, 126c4762a1bSJed Brown {L*L*L,H*L*L,H*H*L,L*H*L, L*L*H,H*L*H,H*H*H,L*H*H}, 127c4762a1bSJed Brown {H*L*L,L*L*L,L*H*L,H*H*L, H*L*H,L*L*H,L*H*H,H*H*H}}; 128c4762a1bSJed Brown static const PetscReal HexQDeriv_Gauss[8][8][3] = { 129c4762a1bSJed Brown {{M*H*H,H*M*H,H*H*M},{P*H*H,L*M*H,L*H*M},{P*L*H,L*P*H,L*L*M},{M*L*H,H*P*H,H*L*M}, {M*H*L,H*M*L,H*H*P},{P*H*L,L*M*L,L*H*P},{P*L*L,L*P*L,L*L*P},{M*L*L,H*P*L,H*L*P}}, 130c4762a1bSJed Brown {{M*H*H,L*M*H,L*H*M},{P*H*H,H*M*H,H*H*M},{P*L*H,H*P*H,H*L*M},{M*L*H,L*P*H,L*L*M}, {M*H*L,L*M*L,L*H*P},{P*H*L,H*M*L,H*H*P},{P*L*L,H*P*L,H*L*P},{M*L*L,L*P*L,L*L*P}}, 131c4762a1bSJed Brown {{M*L*H,L*M*H,L*L*M},{P*L*H,H*M*H,H*L*M},{P*H*H,H*P*H,H*H*M},{M*H*H,L*P*H,L*H*M}, {M*L*L,L*M*L,L*L*P},{P*L*L,H*M*L,H*L*P},{P*H*L,H*P*L,H*H*P},{M*H*L,L*P*L,L*H*P}}, 132c4762a1bSJed Brown {{M*L*H,H*M*H,H*L*M},{P*L*H,L*M*H,L*L*M},{P*H*H,L*P*H,L*H*M},{M*H*H,H*P*H,H*H*M}, {M*L*L,H*M*L,H*L*P},{P*L*L,L*M*L,L*L*P},{P*H*L,L*P*L,L*H*P},{M*H*L,H*P*L,H*H*P}}, 133c4762a1bSJed Brown {{M*H*L,H*M*L,H*H*M},{P*H*L,L*M*L,L*H*M},{P*L*L,L*P*L,L*L*M},{M*L*L,H*P*L,H*L*M}, {M*H*H,H*M*H,H*H*P},{P*H*H,L*M*H,L*H*P},{P*L*H,L*P*H,L*L*P},{M*L*H,H*P*H,H*L*P}}, 134c4762a1bSJed Brown {{M*H*L,L*M*L,L*H*M},{P*H*L,H*M*L,H*H*M},{P*L*L,H*P*L,H*L*M},{M*L*L,L*P*L,L*L*M}, {M*H*H,L*M*H,L*H*P},{P*H*H,H*M*H,H*H*P},{P*L*H,H*P*H,H*L*P},{M*L*H,L*P*H,L*L*P}}, 135c4762a1bSJed Brown {{M*L*L,L*M*L,L*L*M},{P*L*L,H*M*L,H*L*M},{P*H*L,H*P*L,H*H*M},{M*H*L,L*P*L,L*H*M}, {M*L*H,L*M*H,L*L*P},{P*L*H,H*M*H,H*L*P},{P*H*H,H*P*H,H*H*P},{M*H*H,L*P*H,L*H*P}}, 136c4762a1bSJed Brown {{M*L*L,H*M*L,H*L*M},{P*L*L,L*M*L,L*L*M},{P*H*L,L*P*L,L*H*M},{M*H*L,H*P*L,H*H*M}, {M*L*H,H*M*H,H*L*P},{P*L*H,L*M*H,L*L*P},{P*H*H,L*P*H,L*H*P},{M*H*H,H*P*H,H*H*P}}}; 137c4762a1bSJed Brown static const PetscReal (*HexQInterp)[8],(*HexQDeriv)[8][3]; 138c4762a1bSJed Brown /* Standard 2x2 Gauss quadrature for the bottom layer. */ 139c4762a1bSJed Brown static const PetscReal QuadQInterp[4][4] = {{H*H,L*H,L*L,H*L}, 140c4762a1bSJed Brown {L*H,H*H,H*L,L*L}, 141c4762a1bSJed Brown {L*L,H*L,H*H,L*H}, 142c4762a1bSJed Brown {H*L,L*L,L*H,H*H}}; 143c4762a1bSJed Brown static const PetscReal QuadQDeriv[4][4][2] = { 144c4762a1bSJed Brown {{M*H,M*H},{P*H,M*L},{P*L,P*L},{M*L,P*H}}, 145c4762a1bSJed Brown {{M*H,M*L},{P*H,M*H},{P*L,P*H},{M*L,P*L}}, 146c4762a1bSJed Brown {{M*L,M*L},{P*L,M*H},{P*H,P*H},{M*H,P*L}}, 147c4762a1bSJed Brown {{M*L,M*H},{P*L,M*L},{P*H,P*L},{M*H,P*H}}}; 148c4762a1bSJed Brown #undef G 149c4762a1bSJed Brown #undef H 150c4762a1bSJed Brown #undef L 151c4762a1bSJed Brown #undef M 152c4762a1bSJed Brown #undef P 153c4762a1bSJed Brown 154c4762a1bSJed Brown #define HexExtract(x,i,j,k,n) do { \ 155c4762a1bSJed Brown (n)[0] = (x)[i][j][k]; \ 156c4762a1bSJed Brown (n)[1] = (x)[i+1][j][k]; \ 157c4762a1bSJed Brown (n)[2] = (x)[i+1][j+1][k]; \ 158c4762a1bSJed Brown (n)[3] = (x)[i][j+1][k]; \ 159c4762a1bSJed Brown (n)[4] = (x)[i][j][k+1]; \ 160c4762a1bSJed Brown (n)[5] = (x)[i+1][j][k+1]; \ 161c4762a1bSJed Brown (n)[6] = (x)[i+1][j+1][k+1]; \ 162c4762a1bSJed Brown (n)[7] = (x)[i][j+1][k+1]; \ 163c4762a1bSJed Brown } while (0) 164c4762a1bSJed Brown 165c4762a1bSJed Brown #define HexExtractRef(x,i,j,k,n) do { \ 166c4762a1bSJed Brown (n)[0] = &(x)[i][j][k]; \ 167c4762a1bSJed Brown (n)[1] = &(x)[i+1][j][k]; \ 168c4762a1bSJed Brown (n)[2] = &(x)[i+1][j+1][k]; \ 169c4762a1bSJed Brown (n)[3] = &(x)[i][j+1][k]; \ 170c4762a1bSJed Brown (n)[4] = &(x)[i][j][k+1]; \ 171c4762a1bSJed Brown (n)[5] = &(x)[i+1][j][k+1]; \ 172c4762a1bSJed Brown (n)[6] = &(x)[i+1][j+1][k+1]; \ 173c4762a1bSJed Brown (n)[7] = &(x)[i][j+1][k+1]; \ 174c4762a1bSJed Brown } while (0) 175c4762a1bSJed Brown 176c4762a1bSJed Brown #define QuadExtract(x,i,j,n) do { \ 177c4762a1bSJed Brown (n)[0] = (x)[i][j]; \ 178c4762a1bSJed Brown (n)[1] = (x)[i+1][j]; \ 179c4762a1bSJed Brown (n)[2] = (x)[i+1][j+1]; \ 180c4762a1bSJed Brown (n)[3] = (x)[i][j+1]; \ 181c4762a1bSJed Brown } while (0) 182c4762a1bSJed Brown 183c4762a1bSJed Brown static void HexGrad(const PetscReal dphi[][3],const PetscReal zn[],PetscReal dz[]) 184c4762a1bSJed Brown { 185c4762a1bSJed Brown PetscInt i; 186c4762a1bSJed Brown dz[0] = dz[1] = dz[2] = 0; 187c4762a1bSJed Brown for (i=0; i<8; i++) { 188c4762a1bSJed Brown dz[0] += dphi[i][0] * zn[i]; 189c4762a1bSJed Brown dz[1] += dphi[i][1] * zn[i]; 190c4762a1bSJed Brown dz[2] += dphi[i][2] * zn[i]; 191c4762a1bSJed Brown } 192c4762a1bSJed Brown } 193c4762a1bSJed Brown 194c4762a1bSJed Brown static void HexComputeGeometry(PetscInt q,PetscReal hx,PetscReal hy,const PetscReal dz[PETSC_RESTRICT],PetscReal phi[PETSC_RESTRICT],PetscReal dphi[PETSC_RESTRICT][3],PetscReal *PETSC_RESTRICT jw) 195c4762a1bSJed Brown { 196c4762a1bSJed Brown const PetscReal jac[3][3] = {{hx/2,0,0}, {0,hy/2,0}, {dz[0],dz[1],dz[2]}}; 197c4762a1bSJed Brown const PetscReal ijac[3][3] = {{1/jac[0][0],0,0}, {0,1/jac[1][1],0}, {-jac[2][0]/(jac[0][0]*jac[2][2]),-jac[2][1]/(jac[1][1]*jac[2][2]),1/jac[2][2]}}; 198c4762a1bSJed Brown const PetscReal jdet = jac[0][0]*jac[1][1]*jac[2][2]; 199c4762a1bSJed Brown PetscInt i; 200c4762a1bSJed Brown 201c4762a1bSJed Brown for (i=0; i<8; i++) { 202c4762a1bSJed Brown const PetscReal *dphir = HexQDeriv[q][i]; 203c4762a1bSJed Brown phi[i] = HexQInterp[q][i]; 204c4762a1bSJed Brown dphi[i][0] = dphir[0]*ijac[0][0] + dphir[1]*ijac[1][0] + dphir[2]*ijac[2][0]; 205c4762a1bSJed Brown dphi[i][1] = dphir[0]*ijac[0][1] + dphir[1]*ijac[1][1] + dphir[2]*ijac[2][1]; 206c4762a1bSJed Brown dphi[i][2] = dphir[0]*ijac[0][2] + dphir[1]*ijac[1][2] + dphir[2]*ijac[2][2]; 207c4762a1bSJed Brown } 208c4762a1bSJed Brown *jw = 1.0 * jdet; 209c4762a1bSJed Brown } 210c4762a1bSJed Brown 211c4762a1bSJed Brown typedef struct _p_THI *THI; 212c4762a1bSJed Brown typedef struct _n_Units *Units; 213c4762a1bSJed Brown 214c4762a1bSJed Brown typedef struct { 215c4762a1bSJed Brown PetscScalar u,v; 216c4762a1bSJed Brown } Node; 217c4762a1bSJed Brown 218c4762a1bSJed Brown typedef struct { 219c4762a1bSJed Brown PetscScalar b; /* bed */ 220c4762a1bSJed Brown PetscScalar h; /* thickness */ 221c4762a1bSJed Brown PetscScalar beta2; /* friction */ 222c4762a1bSJed Brown } PrmNode; 223c4762a1bSJed Brown 224c4762a1bSJed Brown typedef struct { 225c4762a1bSJed Brown PetscReal min,max,cmin,cmax; 226c4762a1bSJed Brown } PRange; 227c4762a1bSJed Brown 228c4762a1bSJed Brown typedef enum {THIASSEMBLY_TRIDIAGONAL,THIASSEMBLY_FULL} THIAssemblyMode; 229c4762a1bSJed Brown 230c4762a1bSJed Brown struct _p_THI { 231c4762a1bSJed Brown PETSCHEADER(int); 232c4762a1bSJed Brown void (*initialize)(THI,PetscReal x,PetscReal y,PrmNode *p); 233c4762a1bSJed Brown PetscInt zlevels; 234c4762a1bSJed Brown PetscReal Lx,Ly,Lz; /* Model domain */ 235c4762a1bSJed Brown PetscReal alpha; /* Bed angle */ 236c4762a1bSJed Brown Units units; 237c4762a1bSJed Brown PetscReal dirichlet_scale; 238c4762a1bSJed Brown PetscReal ssa_friction_scale; 239c4762a1bSJed Brown PRange eta; 240c4762a1bSJed Brown PRange beta2; 241c4762a1bSJed Brown struct { 242c4762a1bSJed Brown PetscReal Bd2,eps,exponent; 243c4762a1bSJed Brown } viscosity; 244c4762a1bSJed Brown struct { 245c4762a1bSJed Brown PetscReal irefgam,eps2,exponent,refvel,epsvel; 246c4762a1bSJed Brown } friction; 247c4762a1bSJed Brown PetscReal rhog; 248c4762a1bSJed Brown PetscBool no_slip; 249c4762a1bSJed Brown PetscBool tridiagonal; 250c4762a1bSJed Brown PetscBool coarse2d; 251c4762a1bSJed Brown PetscBool verbose; 252c4762a1bSJed Brown MatType mattype; 253c4762a1bSJed Brown }; 254c4762a1bSJed Brown 255c4762a1bSJed Brown struct _n_Units { 256c4762a1bSJed Brown /* fundamental */ 257c4762a1bSJed Brown PetscReal meter; 258c4762a1bSJed Brown PetscReal kilogram; 259c4762a1bSJed Brown PetscReal second; 260c4762a1bSJed Brown /* derived */ 261c4762a1bSJed Brown PetscReal Pascal; 262c4762a1bSJed Brown PetscReal year; 263c4762a1bSJed Brown }; 264c4762a1bSJed Brown 265c4762a1bSJed Brown static PetscErrorCode THIJacobianLocal_3D_Full(DMDALocalInfo*,Node***,Mat,Mat,THI); 266c4762a1bSJed Brown static PetscErrorCode THIJacobianLocal_3D_Tridiagonal(DMDALocalInfo*,Node***,Mat,Mat,THI); 267c4762a1bSJed Brown static PetscErrorCode THIJacobianLocal_2D(DMDALocalInfo*,Node**,Mat,Mat,THI); 268c4762a1bSJed Brown 269c4762a1bSJed Brown static void PrmHexGetZ(const PrmNode pn[],PetscInt k,PetscInt zm,PetscReal zn[]) 270c4762a1bSJed Brown { 271c4762a1bSJed Brown const PetscScalar zm1 = zm-1, 272c4762a1bSJed Brown znl[8] = {pn[0].b + pn[0].h*(PetscScalar)k/zm1, 273c4762a1bSJed Brown pn[1].b + pn[1].h*(PetscScalar)k/zm1, 274c4762a1bSJed Brown pn[2].b + pn[2].h*(PetscScalar)k/zm1, 275c4762a1bSJed Brown pn[3].b + pn[3].h*(PetscScalar)k/zm1, 276c4762a1bSJed Brown pn[0].b + pn[0].h*(PetscScalar)(k+1)/zm1, 277c4762a1bSJed Brown pn[1].b + pn[1].h*(PetscScalar)(k+1)/zm1, 278c4762a1bSJed Brown pn[2].b + pn[2].h*(PetscScalar)(k+1)/zm1, 279c4762a1bSJed Brown pn[3].b + pn[3].h*(PetscScalar)(k+1)/zm1}; 280c4762a1bSJed Brown PetscInt i; 281c4762a1bSJed Brown for (i=0; i<8; i++) zn[i] = PetscRealPart(znl[i]); 282c4762a1bSJed Brown } 283c4762a1bSJed Brown 284c4762a1bSJed Brown /* Tests A and C are from the ISMIP-HOM paper (Pattyn et al. 2008) */ 285c4762a1bSJed Brown static void THIInitialize_HOM_A(THI thi,PetscReal x,PetscReal y,PrmNode *p) 286c4762a1bSJed Brown { 287c4762a1bSJed Brown Units units = thi->units; 288c4762a1bSJed Brown PetscReal s = -x*PetscSinReal(thi->alpha); 289c4762a1bSJed Brown 290c4762a1bSJed Brown p->b = s - 1000*units->meter + 500*units->meter * PetscSinReal(x*2*PETSC_PI/thi->Lx) * PetscSinReal(y*2*PETSC_PI/thi->Ly); 291c4762a1bSJed Brown p->h = s - p->b; 292c4762a1bSJed Brown p->beta2 = 1e30; 293c4762a1bSJed Brown } 294c4762a1bSJed Brown 295c4762a1bSJed Brown static void THIInitialize_HOM_C(THI thi,PetscReal x,PetscReal y,PrmNode *p) 296c4762a1bSJed Brown { 297c4762a1bSJed Brown Units units = thi->units; 298c4762a1bSJed Brown PetscReal s = -x*PetscSinReal(thi->alpha); 299c4762a1bSJed Brown 300c4762a1bSJed Brown p->b = s - 1000*units->meter; 301c4762a1bSJed Brown p->h = s - p->b; 302c4762a1bSJed Brown /* tau_b = beta2 v is a stress (Pa) */ 303c4762a1bSJed Brown p->beta2 = 1000 * (1 + PetscSinReal(x*2*PETSC_PI/thi->Lx)*PetscSinReal(y*2*PETSC_PI/thi->Ly)) * units->Pascal * units->year / units->meter; 304c4762a1bSJed Brown } 305c4762a1bSJed Brown 306c4762a1bSJed Brown /* These are just toys */ 307c4762a1bSJed Brown 308c4762a1bSJed Brown /* Same bed as test A, free slip everywhere except for a discontinuous jump to a circular sticky region in the middle. */ 309c4762a1bSJed Brown static void THIInitialize_HOM_X(THI thi,PetscReal xx,PetscReal yy,PrmNode *p) 310c4762a1bSJed Brown { 311c4762a1bSJed Brown Units units = thi->units; 312c4762a1bSJed Brown PetscReal x = xx*2*PETSC_PI/thi->Lx - PETSC_PI,y = yy*2*PETSC_PI/thi->Ly - PETSC_PI; /* [-pi,pi] */ 313c4762a1bSJed Brown PetscReal r = PetscSqrtReal(x*x + y*y),s = -x*PetscSinReal(thi->alpha); 314c4762a1bSJed Brown p->b = s - 1000*units->meter + 500*units->meter*PetscSinReal(x + PETSC_PI) * PetscSinReal(y + PETSC_PI); 315c4762a1bSJed Brown p->h = s - p->b; 316c4762a1bSJed Brown p->beta2 = 1000 * (r < 1 ? 2 : 0) * units->Pascal * units->year / units->meter; 317c4762a1bSJed Brown } 318c4762a1bSJed Brown 319c4762a1bSJed Brown /* Like Z, but with 200 meter cliffs */ 320c4762a1bSJed Brown static void THIInitialize_HOM_Y(THI thi,PetscReal xx,PetscReal yy,PrmNode *p) 321c4762a1bSJed Brown { 322c4762a1bSJed Brown Units units = thi->units; 323c4762a1bSJed Brown PetscReal x = xx*2*PETSC_PI/thi->Lx - PETSC_PI,y = yy*2*PETSC_PI/thi->Ly - PETSC_PI; /* [-pi,pi] */ 324c4762a1bSJed Brown PetscReal r = PetscSqrtReal(x*x + y*y),s = -x*PetscSinReal(thi->alpha); 325c4762a1bSJed Brown 326c4762a1bSJed Brown p->b = s - 1000*units->meter + 500*units->meter * PetscSinReal(x + PETSC_PI) * PetscSinReal(y + PETSC_PI); 327c4762a1bSJed Brown if (PetscRealPart(p->b) > -700*units->meter) p->b += 200*units->meter; 328c4762a1bSJed Brown p->h = s - p->b; 329c4762a1bSJed Brown p->beta2 = 1000 * (1. + PetscSinReal(PetscSqrtReal(16*r))/PetscSqrtReal(1e-2 + 16*r)*PetscCosReal(x*3/2)*PetscCosReal(y*3/2)) * units->Pascal * units->year / units->meter; 330c4762a1bSJed Brown } 331c4762a1bSJed Brown 332c4762a1bSJed Brown /* Same bed as A, smoothly varying slipperiness, similar to MATLAB's "sombrero" (uncorrelated with bathymetry) */ 333c4762a1bSJed Brown static void THIInitialize_HOM_Z(THI thi,PetscReal xx,PetscReal yy,PrmNode *p) 334c4762a1bSJed Brown { 335c4762a1bSJed Brown Units units = thi->units; 336c4762a1bSJed Brown PetscReal x = xx*2*PETSC_PI/thi->Lx - PETSC_PI,y = yy*2*PETSC_PI/thi->Ly - PETSC_PI; /* [-pi,pi] */ 337c4762a1bSJed Brown PetscReal r = PetscSqrtReal(x*x + y*y),s = -x*PetscSinReal(thi->alpha); 338c4762a1bSJed Brown 339c4762a1bSJed Brown p->b = s - 1000*units->meter + 500*units->meter * PetscSinReal(x + PETSC_PI) * PetscSinReal(y + PETSC_PI); 340c4762a1bSJed Brown p->h = s - p->b; 341c4762a1bSJed Brown p->beta2 = 1000 * (1. + PetscSinReal(PetscSqrtReal(16*r))/PetscSqrtReal(1e-2 + 16*r)*PetscCosReal(x*3/2)*PetscCosReal(y*3/2)) * units->Pascal * units->year / units->meter; 342c4762a1bSJed Brown } 343c4762a1bSJed Brown 344c4762a1bSJed Brown static void THIFriction(THI thi,PetscReal rbeta2,PetscReal gam,PetscReal *beta2,PetscReal *dbeta2) 345c4762a1bSJed Brown { 346c4762a1bSJed Brown if (thi->friction.irefgam == 0) { 347c4762a1bSJed Brown Units units = thi->units; 348c4762a1bSJed Brown thi->friction.irefgam = 1./(0.5*PetscSqr(thi->friction.refvel * units->meter / units->year)); 349c4762a1bSJed Brown thi->friction.eps2 = 0.5*PetscSqr(thi->friction.epsvel * units->meter / units->year) * thi->friction.irefgam; 350c4762a1bSJed Brown } 351c4762a1bSJed Brown if (thi->friction.exponent == 0) { 352c4762a1bSJed Brown *beta2 = rbeta2; 353c4762a1bSJed Brown *dbeta2 = 0; 354c4762a1bSJed Brown } else { 355c4762a1bSJed Brown *beta2 = rbeta2 * PetscPowReal(thi->friction.eps2 + gam*thi->friction.irefgam,thi->friction.exponent); 356c4762a1bSJed Brown *dbeta2 = thi->friction.exponent * *beta2 / (thi->friction.eps2 + gam*thi->friction.irefgam) * thi->friction.irefgam; 357c4762a1bSJed Brown } 358c4762a1bSJed Brown } 359c4762a1bSJed Brown 360c4762a1bSJed Brown static void THIViscosity(THI thi,PetscReal gam,PetscReal *eta,PetscReal *deta) 361c4762a1bSJed Brown { 362c4762a1bSJed Brown PetscReal Bd2,eps,exponent; 363c4762a1bSJed Brown if (thi->viscosity.Bd2 == 0) { 364c4762a1bSJed Brown Units units = thi->units; 365c4762a1bSJed Brown const PetscReal 366c4762a1bSJed Brown n = 3., /* Glen exponent */ 367c4762a1bSJed Brown p = 1. + 1./n, /* for Stokes */ 368c4762a1bSJed Brown A = 1.e-16 * PetscPowReal(units->Pascal,-n) / units->year, /* softness parameter (Pa^{-n}/s) */ 369c4762a1bSJed Brown B = PetscPowReal(A,-1./n); /* hardness parameter */ 370c4762a1bSJed Brown thi->viscosity.Bd2 = B/2; 371c4762a1bSJed Brown thi->viscosity.exponent = (p-2)/2; 372c4762a1bSJed Brown thi->viscosity.eps = 0.5*PetscSqr(1e-5 / units->year); 373c4762a1bSJed Brown } 374c4762a1bSJed Brown Bd2 = thi->viscosity.Bd2; 375c4762a1bSJed Brown exponent = thi->viscosity.exponent; 376c4762a1bSJed Brown eps = thi->viscosity.eps; 377c4762a1bSJed Brown *eta = Bd2 * PetscPowReal(eps + gam,exponent); 378c4762a1bSJed Brown *deta = exponent * (*eta) / (eps + gam); 379c4762a1bSJed Brown } 380c4762a1bSJed Brown 381c4762a1bSJed Brown static void RangeUpdate(PetscReal *min,PetscReal *max,PetscReal x) 382c4762a1bSJed Brown { 383c4762a1bSJed Brown if (x < *min) *min = x; 384c4762a1bSJed Brown if (x > *max) *max = x; 385c4762a1bSJed Brown } 386c4762a1bSJed Brown 387c4762a1bSJed Brown static void PRangeClear(PRange *p) 388c4762a1bSJed Brown { 389c4762a1bSJed Brown p->cmin = p->min = 1e100; 390c4762a1bSJed Brown p->cmax = p->max = -1e100; 391c4762a1bSJed Brown } 392c4762a1bSJed Brown 393c4762a1bSJed Brown static PetscErrorCode PRangeMinMax(PRange *p,PetscReal min,PetscReal max) 394c4762a1bSJed Brown { 395c4762a1bSJed Brown PetscFunctionBeginUser; 396c4762a1bSJed Brown p->cmin = min; 397c4762a1bSJed Brown p->cmax = max; 398c4762a1bSJed Brown if (min < p->min) p->min = min; 399c4762a1bSJed Brown if (max > p->max) p->max = max; 400c4762a1bSJed Brown PetscFunctionReturn(0); 401c4762a1bSJed Brown } 402c4762a1bSJed Brown 403c4762a1bSJed Brown static PetscErrorCode THIDestroy(THI *thi) 404c4762a1bSJed Brown { 405c4762a1bSJed Brown PetscFunctionBeginUser; 406c4762a1bSJed Brown if (!*thi) PetscFunctionReturn(0); 407c4762a1bSJed Brown if (--((PetscObject)(*thi))->refct > 0) {*thi = 0; PetscFunctionReturn(0);} 4085f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree((*thi)->units)); 4095f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree((*thi)->mattype)); 4105f80ce2aSJacob Faibussowitsch CHKERRQ(PetscHeaderDestroy(thi)); 411c4762a1bSJed Brown PetscFunctionReturn(0); 412c4762a1bSJed Brown } 413c4762a1bSJed Brown 414c4762a1bSJed Brown static PetscErrorCode THICreate(MPI_Comm comm,THI *inthi) 415c4762a1bSJed Brown { 416c4762a1bSJed Brown static PetscBool registered = PETSC_FALSE; 417c4762a1bSJed Brown THI thi; 418c4762a1bSJed Brown Units units; 419c4762a1bSJed Brown PetscErrorCode ierr; 420c4762a1bSJed Brown 421c4762a1bSJed Brown PetscFunctionBeginUser; 422c4762a1bSJed Brown *inthi = 0; 423c4762a1bSJed Brown if (!registered) { 4245f80ce2aSJacob Faibussowitsch CHKERRQ(PetscClassIdRegister("Toy Hydrostatic Ice",&THI_CLASSID)); 425c4762a1bSJed Brown registered = PETSC_TRUE; 426c4762a1bSJed Brown } 4275f80ce2aSJacob Faibussowitsch CHKERRQ(PetscHeaderCreate(thi,THI_CLASSID,"THI","Toy Hydrostatic Ice","",comm,THIDestroy,0)); 428c4762a1bSJed Brown 4295f80ce2aSJacob Faibussowitsch CHKERRQ(PetscNew(&thi->units)); 430c4762a1bSJed Brown units = thi->units; 431c4762a1bSJed Brown units->meter = 1e-2; 432c4762a1bSJed Brown units->second = 1e-7; 433c4762a1bSJed Brown units->kilogram = 1e-12; 434c4762a1bSJed Brown 435c4762a1bSJed Brown ierr = PetscOptionsBegin(comm,NULL,"Scaled units options","");CHKERRQ(ierr); 436c4762a1bSJed Brown { 4375f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsReal("-units_meter","1 meter in scaled length units","",units->meter,&units->meter,NULL)); 4385f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsReal("-units_second","1 second in scaled time units","",units->second,&units->second,NULL)); 4395f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsReal("-units_kilogram","1 kilogram in scaled mass units","",units->kilogram,&units->kilogram,NULL)); 440c4762a1bSJed Brown } 441c4762a1bSJed Brown ierr = PetscOptionsEnd();CHKERRQ(ierr); 442c4762a1bSJed Brown units->Pascal = units->kilogram / (units->meter * PetscSqr(units->second)); 443c4762a1bSJed Brown units->year = 31556926. * units->second; /* seconds per year */ 444c4762a1bSJed Brown 445c4762a1bSJed Brown thi->Lx = 10.e3; 446c4762a1bSJed Brown thi->Ly = 10.e3; 447c4762a1bSJed Brown thi->Lz = 1000; 448c4762a1bSJed Brown thi->dirichlet_scale = 1; 449c4762a1bSJed Brown thi->verbose = PETSC_FALSE; 450c4762a1bSJed Brown 451c4762a1bSJed Brown ierr = PetscOptionsBegin(comm,NULL,"Toy Hydrostatic Ice options","");CHKERRQ(ierr); 452c4762a1bSJed Brown { 453c4762a1bSJed Brown QuadratureType quad = QUAD_GAUSS; 454c4762a1bSJed Brown char homexp[] = "A"; 455c4762a1bSJed Brown char mtype[256] = MATSBAIJ; 456c4762a1bSJed Brown PetscReal L,m = 1.0; 457c4762a1bSJed Brown PetscBool flg; 458c4762a1bSJed Brown L = thi->Lx; 4595f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsReal("-thi_L","Domain size (m)","",L,&L,&flg)); 460c4762a1bSJed Brown if (flg) thi->Lx = thi->Ly = L; 4615f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsReal("-thi_Lx","X Domain size (m)","",thi->Lx,&thi->Lx,NULL)); 4625f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsReal("-thi_Ly","Y Domain size (m)","",thi->Ly,&thi->Ly,NULL)); 4635f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsReal("-thi_Lz","Z Domain size (m)","",thi->Lz,&thi->Lz,NULL)); 4645f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsString("-thi_hom","ISMIP-HOM experiment (A or C)","",homexp,homexp,sizeof(homexp),NULL)); 465c4762a1bSJed Brown switch (homexp[0] = toupper(homexp[0])) { 466c4762a1bSJed Brown case 'A': 467c4762a1bSJed Brown thi->initialize = THIInitialize_HOM_A; 468c4762a1bSJed Brown thi->no_slip = PETSC_TRUE; 469c4762a1bSJed Brown thi->alpha = 0.5; 470c4762a1bSJed Brown break; 471c4762a1bSJed Brown case 'C': 472c4762a1bSJed Brown thi->initialize = THIInitialize_HOM_C; 473c4762a1bSJed Brown thi->no_slip = PETSC_FALSE; 474c4762a1bSJed Brown thi->alpha = 0.1; 475c4762a1bSJed Brown break; 476c4762a1bSJed Brown case 'X': 477c4762a1bSJed Brown thi->initialize = THIInitialize_HOM_X; 478c4762a1bSJed Brown thi->no_slip = PETSC_FALSE; 479c4762a1bSJed Brown thi->alpha = 0.3; 480c4762a1bSJed Brown break; 481c4762a1bSJed Brown case 'Y': 482c4762a1bSJed Brown thi->initialize = THIInitialize_HOM_Y; 483c4762a1bSJed Brown thi->no_slip = PETSC_FALSE; 484c4762a1bSJed Brown thi->alpha = 0.5; 485c4762a1bSJed Brown break; 486c4762a1bSJed Brown case 'Z': 487c4762a1bSJed Brown thi->initialize = THIInitialize_HOM_Z; 488c4762a1bSJed Brown thi->no_slip = PETSC_FALSE; 489c4762a1bSJed Brown thi->alpha = 0.5; 490c4762a1bSJed Brown break; 491c4762a1bSJed Brown default: 49298921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"HOM experiment '%c' not implemented",homexp[0]); 493c4762a1bSJed Brown } 4945f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsEnum("-thi_quadrature","Quadrature to use for 3D elements","",QuadratureTypes,(PetscEnum)quad,(PetscEnum*)&quad,NULL)); 495c4762a1bSJed Brown switch (quad) { 496c4762a1bSJed Brown case QUAD_GAUSS: 497c4762a1bSJed Brown HexQInterp = HexQInterp_Gauss; 498c4762a1bSJed Brown HexQDeriv = HexQDeriv_Gauss; 499c4762a1bSJed Brown break; 500c4762a1bSJed Brown case QUAD_LOBATTO: 501c4762a1bSJed Brown HexQInterp = HexQInterp_Lobatto; 502c4762a1bSJed Brown HexQDeriv = HexQDeriv_Lobatto; 503c4762a1bSJed Brown break; 504c4762a1bSJed Brown } 5055f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsReal("-thi_alpha","Bed angle (degrees)","",thi->alpha,&thi->alpha,NULL)); 506c4762a1bSJed Brown 507c4762a1bSJed Brown thi->friction.refvel = 100.; 508c4762a1bSJed Brown thi->friction.epsvel = 1.; 509c4762a1bSJed Brown 5105f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsReal("-thi_friction_refvel","Reference velocity for sliding","",thi->friction.refvel,&thi->friction.refvel,NULL)); 5115f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsReal("-thi_friction_epsvel","Regularization velocity for sliding","",thi->friction.epsvel,&thi->friction.epsvel,NULL)); 5125f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsReal("-thi_friction_m","Friction exponent, 0=Coulomb, 1=Navier","",m,&m,NULL)); 513c4762a1bSJed Brown 514c4762a1bSJed Brown thi->friction.exponent = (m-1)/2; 515c4762a1bSJed Brown 5165f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsReal("-thi_dirichlet_scale","Scale Dirichlet boundary conditions by this factor","",thi->dirichlet_scale,&thi->dirichlet_scale,NULL)); 5175f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsReal("-thi_ssa_friction_scale","Scale slip boundary conditions by this factor in SSA (2D) assembly","",thi->ssa_friction_scale,&thi->ssa_friction_scale,NULL)); 5185f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsBool("-thi_coarse2d","Use a 2D coarse space corresponding to SSA","",thi->coarse2d,&thi->coarse2d,NULL)); 5195f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsBool("-thi_tridiagonal","Assemble a tridiagonal system (column coupling only) on the finest level","",thi->tridiagonal,&thi->tridiagonal,NULL)); 5205f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsFList("-thi_mat_type","Matrix type","MatSetType",MatList,mtype,(char*)mtype,sizeof(mtype),NULL)); 5215f80ce2aSJacob Faibussowitsch CHKERRQ(PetscStrallocpy(mtype,(char**)&thi->mattype)); 5225f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsBool("-thi_verbose","Enable verbose output (like matrix sizes and statistics)","",thi->verbose,&thi->verbose,NULL)); 523c4762a1bSJed Brown } 524c4762a1bSJed Brown ierr = PetscOptionsEnd();CHKERRQ(ierr); 525c4762a1bSJed Brown 526c4762a1bSJed Brown /* dimensionalize */ 527c4762a1bSJed Brown thi->Lx *= units->meter; 528c4762a1bSJed Brown thi->Ly *= units->meter; 529c4762a1bSJed Brown thi->Lz *= units->meter; 530c4762a1bSJed Brown thi->alpha *= PETSC_PI / 180; 531c4762a1bSJed Brown 532c4762a1bSJed Brown PRangeClear(&thi->eta); 533c4762a1bSJed Brown PRangeClear(&thi->beta2); 534c4762a1bSJed Brown 535c4762a1bSJed Brown { 536c4762a1bSJed Brown PetscReal u = 1000*units->meter/(3e7*units->second), 537c4762a1bSJed Brown gradu = u / (100*units->meter),eta,deta, 538c4762a1bSJed Brown rho = 910 * units->kilogram/PetscPowReal(units->meter,3), 539c4762a1bSJed Brown grav = 9.81 * units->meter/PetscSqr(units->second), 540c4762a1bSJed Brown driving = rho * grav * PetscSinReal(thi->alpha) * 1000*units->meter; 541c4762a1bSJed Brown THIViscosity(thi,0.5*gradu*gradu,&eta,&deta); 542c4762a1bSJed Brown thi->rhog = rho * grav; 543c4762a1bSJed Brown if (thi->verbose) { 5445f80ce2aSJacob Faibussowitsch CHKERRQ(PetscPrintf(PetscObjectComm((PetscObject)thi),"Units: meter %8.2g second %8.2g kg %8.2g Pa %8.2g\n",(double)units->meter,(double)units->second,(double)units->kilogram,(double)units->Pascal)); 5455f80ce2aSJacob Faibussowitsch CHKERRQ(PetscPrintf(PetscObjectComm((PetscObject)thi),"Domain (%6.2g,%6.2g,%6.2g), pressure %8.2g, driving stress %8.2g\n",(double)thi->Lx,(double)thi->Ly,(double)thi->Lz,(double)(rho*grav*1e3*units->meter),(double)driving)); 5465f80ce2aSJacob Faibussowitsch CHKERRQ(PetscPrintf(PetscObjectComm((PetscObject)thi),"Large velocity 1km/a %8.2g, velocity gradient %8.2g, eta %8.2g, stress %8.2g, ratio %8.2g\n",(double)u,(double)gradu,(double)eta,(double)(2*eta*gradu),(double)(2*eta*gradu/driving))); 547c4762a1bSJed Brown THIViscosity(thi,0.5*PetscSqr(1e-3*gradu),&eta,&deta); 5485f80ce2aSJacob Faibussowitsch CHKERRQ(PetscPrintf(PetscObjectComm((PetscObject)thi),"Small velocity 1m/a %8.2g, velocity gradient %8.2g, eta %8.2g, stress %8.2g, ratio %8.2g\n",(double)(1e-3*u),(double)(1e-3*gradu),(double)eta,(double)(2*eta*1e-3*gradu),(double)(2*eta*1e-3*gradu/driving))); 549c4762a1bSJed Brown } 550c4762a1bSJed Brown } 551c4762a1bSJed Brown 552c4762a1bSJed Brown *inthi = thi; 553c4762a1bSJed Brown PetscFunctionReturn(0); 554c4762a1bSJed Brown } 555c4762a1bSJed Brown 556c4762a1bSJed Brown static PetscErrorCode THIInitializePrm(THI thi,DM da2prm,Vec prm) 557c4762a1bSJed Brown { 558c4762a1bSJed Brown PrmNode **p; 559c4762a1bSJed Brown PetscInt i,j,xs,xm,ys,ym,mx,my; 560c4762a1bSJed Brown 561c4762a1bSJed Brown PetscFunctionBeginUser; 5625f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAGetGhostCorners(da2prm,&ys,&xs,0,&ym,&xm,0)); 5635f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAGetInfo(da2prm,0, &my,&mx,0, 0,0,0, 0,0,0,0,0,0)); 5645f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAVecGetArray(da2prm,prm,&p)); 565c4762a1bSJed Brown for (i=xs; i<xs+xm; i++) { 566c4762a1bSJed Brown for (j=ys; j<ys+ym; j++) { 567c4762a1bSJed Brown PetscReal xx = thi->Lx*i/mx,yy = thi->Ly*j/my; 568c4762a1bSJed Brown thi->initialize(thi,xx,yy,&p[i][j]); 569c4762a1bSJed Brown } 570c4762a1bSJed Brown } 5715f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAVecRestoreArray(da2prm,prm,&p)); 572c4762a1bSJed Brown PetscFunctionReturn(0); 573c4762a1bSJed Brown } 574c4762a1bSJed Brown 575c4762a1bSJed Brown static PetscErrorCode THISetUpDM(THI thi,DM dm) 576c4762a1bSJed Brown { 577c4762a1bSJed Brown PetscInt refinelevel,coarsenlevel,level,dim,Mx,My,Mz,mx,my,s; 578c4762a1bSJed Brown DMDAStencilType st; 579c4762a1bSJed Brown DM da2prm; 580c4762a1bSJed Brown Vec X; 581c4762a1bSJed Brown 582c4762a1bSJed Brown PetscFunctionBeginUser; 5835f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAGetInfo(dm,&dim, &Mz,&My,&Mx, 0,&my,&mx, 0,&s,0,0,0,&st)); 584c4762a1bSJed Brown if (dim == 2) { 5855f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAGetInfo(dm,&dim, &My,&Mx,0, &my,&mx,0, 0,&s,0,0,0,&st)); 586c4762a1bSJed Brown } 5875f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetRefineLevel(dm,&refinelevel)); 5885f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetCoarsenLevel(dm,&coarsenlevel)); 589c4762a1bSJed Brown level = refinelevel - coarsenlevel; 5905f80ce2aSJacob Faibussowitsch CHKERRQ(DMDACreate2d(PetscObjectComm((PetscObject)thi),DM_BOUNDARY_PERIODIC,DM_BOUNDARY_PERIODIC,st,My,Mx,my,mx,sizeof(PrmNode)/sizeof(PetscScalar),s,0,0,&da2prm)); 5915f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetUp(da2prm)); 5925f80ce2aSJacob Faibussowitsch CHKERRQ(DMCreateLocalVector(da2prm,&X)); 593c4762a1bSJed Brown { 594c4762a1bSJed Brown PetscReal Lx = thi->Lx / thi->units->meter,Ly = thi->Ly / thi->units->meter,Lz = thi->Lz / thi->units->meter; 595c4762a1bSJed Brown if (dim == 2) { 5965f80ce2aSJacob Faibussowitsch CHKERRQ(PetscPrintf(PetscObjectComm((PetscObject)thi),"Level %D domain size (m) %8.2g x %8.2g, num elements %D x %D (%D), size (m) %g x %g\n",level,(double)Lx,(double)Ly,Mx,My,Mx*My,(double)(Lx/Mx),(double)(Ly/My))); 597c4762a1bSJed Brown } else { 5985f80ce2aSJacob Faibussowitsch CHKERRQ(PetscPrintf(PetscObjectComm((PetscObject)thi),"Level %D domain size (m) %8.2g x %8.2g x %8.2g, num elements %D x %D x %D (%D), size (m) %g x %g x %g\n",level,(double)Lx,(double)Ly,(double)Lz,Mx,My,Mz,Mx*My*Mz,(double)(Lx/Mx),(double)(Ly/My),(double)(1000./(Mz-1)))); 599c4762a1bSJed Brown } 600c4762a1bSJed Brown } 6015f80ce2aSJacob Faibussowitsch CHKERRQ(THIInitializePrm(thi,da2prm,X)); 602c4762a1bSJed Brown if (thi->tridiagonal) { /* Reset coarse Jacobian evaluation */ 6035f80ce2aSJacob Faibussowitsch CHKERRQ(DMDASNESSetJacobianLocal(dm,(DMDASNESJacobian)THIJacobianLocal_3D_Full,thi)); 604c4762a1bSJed Brown } 605c4762a1bSJed Brown if (thi->coarse2d) { 6065f80ce2aSJacob Faibussowitsch CHKERRQ(DMDASNESSetJacobianLocal(dm,(DMDASNESJacobian)THIJacobianLocal_2D,thi)); 607c4762a1bSJed Brown } 6085f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectCompose((PetscObject)dm,"DMDA2Prm",(PetscObject)da2prm)); 6095f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectCompose((PetscObject)dm,"DMDA2Prm_Vec",(PetscObject)X)); 6105f80ce2aSJacob Faibussowitsch CHKERRQ(DMDestroy(&da2prm)); 6115f80ce2aSJacob Faibussowitsch CHKERRQ(VecDestroy(&X)); 612c4762a1bSJed Brown PetscFunctionReturn(0); 613c4762a1bSJed Brown } 614c4762a1bSJed Brown 615c4762a1bSJed Brown static PetscErrorCode DMCoarsenHook_THI(DM dmf,DM dmc,void *ctx) 616c4762a1bSJed Brown { 617c4762a1bSJed Brown THI thi = (THI)ctx; 618c4762a1bSJed Brown PetscInt rlevel,clevel; 619c4762a1bSJed Brown 620c4762a1bSJed Brown PetscFunctionBeginUser; 6215f80ce2aSJacob Faibussowitsch CHKERRQ(THISetUpDM(thi,dmc)); 6225f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetRefineLevel(dmc,&rlevel)); 6235f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetCoarsenLevel(dmc,&clevel)); 6245f80ce2aSJacob Faibussowitsch if (rlevel-clevel == 0) CHKERRQ(DMSetMatType(dmc,MATAIJ)); 6255f80ce2aSJacob Faibussowitsch CHKERRQ(DMCoarsenHookAdd(dmc,DMCoarsenHook_THI,NULL,thi)); 626c4762a1bSJed Brown PetscFunctionReturn(0); 627c4762a1bSJed Brown } 628c4762a1bSJed Brown 629c4762a1bSJed Brown static PetscErrorCode DMRefineHook_THI(DM dmc,DM dmf,void *ctx) 630c4762a1bSJed Brown { 631c4762a1bSJed Brown THI thi = (THI)ctx; 632c4762a1bSJed Brown 633c4762a1bSJed Brown PetscFunctionBeginUser; 6345f80ce2aSJacob Faibussowitsch CHKERRQ(THISetUpDM(thi,dmf)); 6355f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetMatType(dmf,thi->mattype)); 6365f80ce2aSJacob Faibussowitsch CHKERRQ(DMRefineHookAdd(dmf,DMRefineHook_THI,NULL,thi)); 637c4762a1bSJed Brown /* With grid sequencing, a formerly-refined DM will later be coarsened by PCSetUp_MG */ 6385f80ce2aSJacob Faibussowitsch CHKERRQ(DMCoarsenHookAdd(dmf,DMCoarsenHook_THI,NULL,thi)); 639c4762a1bSJed Brown PetscFunctionReturn(0); 640c4762a1bSJed Brown } 641c4762a1bSJed Brown 642c4762a1bSJed Brown static PetscErrorCode THIDAGetPrm(DM da,PrmNode ***prm) 643c4762a1bSJed Brown { 644c4762a1bSJed Brown DM da2prm; 645c4762a1bSJed Brown Vec X; 646c4762a1bSJed Brown 647c4762a1bSJed Brown PetscFunctionBeginUser; 6485f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectQuery((PetscObject)da,"DMDA2Prm",(PetscObject*)&da2prm)); 649*28b400f6SJacob Faibussowitsch PetscCheck(da2prm,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"No DMDA2Prm composed with given DMDA"); 6505f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectQuery((PetscObject)da,"DMDA2Prm_Vec",(PetscObject*)&X)); 651*28b400f6SJacob Faibussowitsch PetscCheck(X,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"No DMDA2Prm_Vec composed with given DMDA"); 6525f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAVecGetArray(da2prm,X,prm)); 653c4762a1bSJed Brown PetscFunctionReturn(0); 654c4762a1bSJed Brown } 655c4762a1bSJed Brown 656c4762a1bSJed Brown static PetscErrorCode THIDARestorePrm(DM da,PrmNode ***prm) 657c4762a1bSJed Brown { 658c4762a1bSJed Brown DM da2prm; 659c4762a1bSJed Brown Vec X; 660c4762a1bSJed Brown 661c4762a1bSJed Brown PetscFunctionBeginUser; 6625f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectQuery((PetscObject)da,"DMDA2Prm",(PetscObject*)&da2prm)); 663*28b400f6SJacob Faibussowitsch PetscCheck(da2prm,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"No DMDA2Prm composed with given DMDA"); 6645f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectQuery((PetscObject)da,"DMDA2Prm_Vec",(PetscObject*)&X)); 665*28b400f6SJacob Faibussowitsch PetscCheck(X,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"No DMDA2Prm_Vec composed with given DMDA"); 6665f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAVecRestoreArray(da2prm,X,prm)); 667c4762a1bSJed Brown PetscFunctionReturn(0); 668c4762a1bSJed Brown } 669c4762a1bSJed Brown 670c4762a1bSJed Brown static PetscErrorCode THIInitial(SNES snes,Vec X,void *ctx) 671c4762a1bSJed Brown { 672c4762a1bSJed Brown THI thi; 673c4762a1bSJed Brown PetscInt i,j,k,xs,xm,ys,ym,zs,zm,mx,my; 674c4762a1bSJed Brown PetscReal hx,hy; 675c4762a1bSJed Brown PrmNode **prm; 676c4762a1bSJed Brown Node ***x; 677c4762a1bSJed Brown DM da; 678c4762a1bSJed Brown 679c4762a1bSJed Brown PetscFunctionBeginUser; 6805f80ce2aSJacob Faibussowitsch CHKERRQ(SNESGetDM(snes,&da)); 6815f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetApplicationContext(da,&thi)); 6825f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAGetInfo(da,0, 0,&my,&mx, 0,0,0, 0,0,0,0,0,0)); 6835f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAGetCorners(da,&zs,&ys,&xs,&zm,&ym,&xm)); 6845f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAVecGetArray(da,X,&x)); 6855f80ce2aSJacob Faibussowitsch CHKERRQ(THIDAGetPrm(da,&prm)); 686c4762a1bSJed Brown hx = thi->Lx / mx; 687c4762a1bSJed Brown hy = thi->Ly / my; 688c4762a1bSJed Brown for (i=xs; i<xs+xm; i++) { 689c4762a1bSJed Brown for (j=ys; j<ys+ym; j++) { 690c4762a1bSJed Brown for (k=zs; k<zs+zm; k++) { 691c4762a1bSJed Brown const PetscScalar zm1 = zm-1, 692c4762a1bSJed Brown drivingx = thi->rhog * (prm[i+1][j].b+prm[i+1][j].h - prm[i-1][j].b-prm[i-1][j].h) / (2*hx), 693c4762a1bSJed Brown drivingy = thi->rhog * (prm[i][j+1].b+prm[i][j+1].h - prm[i][j-1].b-prm[i][j-1].h) / (2*hy); 694c4762a1bSJed Brown x[i][j][k].u = 0. * drivingx * prm[i][j].h*(PetscScalar)k/zm1; 695c4762a1bSJed Brown x[i][j][k].v = 0. * drivingy * prm[i][j].h*(PetscScalar)k/zm1; 696c4762a1bSJed Brown } 697c4762a1bSJed Brown } 698c4762a1bSJed Brown } 6995f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAVecRestoreArray(da,X,&x)); 7005f80ce2aSJacob Faibussowitsch CHKERRQ(THIDARestorePrm(da,&prm)); 701c4762a1bSJed Brown PetscFunctionReturn(0); 702c4762a1bSJed Brown } 703c4762a1bSJed Brown 704c4762a1bSJed Brown static void PointwiseNonlinearity(THI thi,const Node n[PETSC_RESTRICT],const PetscReal phi[PETSC_RESTRICT],PetscReal dphi[PETSC_RESTRICT][3],PetscScalar *PETSC_RESTRICT u,PetscScalar *PETSC_RESTRICT v,PetscScalar du[PETSC_RESTRICT],PetscScalar dv[PETSC_RESTRICT],PetscReal *eta,PetscReal *deta) 705c4762a1bSJed Brown { 706c4762a1bSJed Brown PetscInt l,ll; 707c4762a1bSJed Brown PetscScalar gam; 708c4762a1bSJed Brown 709c4762a1bSJed Brown du[0] = du[1] = du[2] = 0; 710c4762a1bSJed Brown dv[0] = dv[1] = dv[2] = 0; 711c4762a1bSJed Brown *u = 0; 712c4762a1bSJed Brown *v = 0; 713c4762a1bSJed Brown for (l=0; l<8; l++) { 714c4762a1bSJed Brown *u += phi[l] * n[l].u; 715c4762a1bSJed Brown *v += phi[l] * n[l].v; 716c4762a1bSJed Brown for (ll=0; ll<3; ll++) { 717c4762a1bSJed Brown du[ll] += dphi[l][ll] * n[l].u; 718c4762a1bSJed Brown dv[ll] += dphi[l][ll] * n[l].v; 719c4762a1bSJed Brown } 720c4762a1bSJed Brown } 721c4762a1bSJed Brown gam = PetscSqr(du[0]) + PetscSqr(dv[1]) + du[0]*dv[1] + 0.25*PetscSqr(du[1]+dv[0]) + 0.25*PetscSqr(du[2]) + 0.25*PetscSqr(dv[2]); 722c4762a1bSJed Brown THIViscosity(thi,PetscRealPart(gam),eta,deta); 723c4762a1bSJed Brown } 724c4762a1bSJed Brown 725c4762a1bSJed Brown static void PointwiseNonlinearity2D(THI thi,Node n[],PetscReal phi[],PetscReal dphi[4][2],PetscScalar *u,PetscScalar *v,PetscScalar du[],PetscScalar dv[],PetscReal *eta,PetscReal *deta) 726c4762a1bSJed Brown { 727c4762a1bSJed Brown PetscInt l,ll; 728c4762a1bSJed Brown PetscScalar gam; 729c4762a1bSJed Brown 730c4762a1bSJed Brown du[0] = du[1] = 0; 731c4762a1bSJed Brown dv[0] = dv[1] = 0; 732c4762a1bSJed Brown *u = 0; 733c4762a1bSJed Brown *v = 0; 734c4762a1bSJed Brown for (l=0; l<4; l++) { 735c4762a1bSJed Brown *u += phi[l] * n[l].u; 736c4762a1bSJed Brown *v += phi[l] * n[l].v; 737c4762a1bSJed Brown for (ll=0; ll<2; ll++) { 738c4762a1bSJed Brown du[ll] += dphi[l][ll] * n[l].u; 739c4762a1bSJed Brown dv[ll] += dphi[l][ll] * n[l].v; 740c4762a1bSJed Brown } 741c4762a1bSJed Brown } 742c4762a1bSJed Brown gam = PetscSqr(du[0]) + PetscSqr(dv[1]) + du[0]*dv[1] + 0.25*PetscSqr(du[1]+dv[0]); 743c4762a1bSJed Brown THIViscosity(thi,PetscRealPart(gam),eta,deta); 744c4762a1bSJed Brown } 745c4762a1bSJed Brown 746c4762a1bSJed Brown static PetscErrorCode THIFunctionLocal(DMDALocalInfo *info,Node ***x,Node ***f,THI thi) 747c4762a1bSJed Brown { 748c4762a1bSJed Brown PetscInt xs,ys,xm,ym,zm,i,j,k,q,l; 749c4762a1bSJed Brown PetscReal hx,hy,etamin,etamax,beta2min,beta2max; 750c4762a1bSJed Brown PrmNode **prm; 751c4762a1bSJed Brown 752c4762a1bSJed Brown PetscFunctionBeginUser; 753c4762a1bSJed Brown xs = info->zs; 754c4762a1bSJed Brown ys = info->ys; 755c4762a1bSJed Brown xm = info->zm; 756c4762a1bSJed Brown ym = info->ym; 757c4762a1bSJed Brown zm = info->xm; 758c4762a1bSJed Brown hx = thi->Lx / info->mz; 759c4762a1bSJed Brown hy = thi->Ly / info->my; 760c4762a1bSJed Brown 761c4762a1bSJed Brown etamin = 1e100; 762c4762a1bSJed Brown etamax = 0; 763c4762a1bSJed Brown beta2min = 1e100; 764c4762a1bSJed Brown beta2max = 0; 765c4762a1bSJed Brown 7665f80ce2aSJacob Faibussowitsch CHKERRQ(THIDAGetPrm(info->da,&prm)); 767c4762a1bSJed Brown 768c4762a1bSJed Brown for (i=xs; i<xs+xm; i++) { 769c4762a1bSJed Brown for (j=ys; j<ys+ym; j++) { 770c4762a1bSJed Brown PrmNode pn[4]; 771c4762a1bSJed Brown QuadExtract(prm,i,j,pn); 772c4762a1bSJed Brown for (k=0; k<zm-1; k++) { 773c4762a1bSJed Brown PetscInt ls = 0; 774c4762a1bSJed Brown Node n[8],*fn[8]; 775c4762a1bSJed Brown PetscReal zn[8],etabase = 0; 776c4762a1bSJed Brown PrmHexGetZ(pn,k,zm,zn); 777c4762a1bSJed Brown HexExtract(x,i,j,k,n); 778c4762a1bSJed Brown HexExtractRef(f,i,j,k,fn); 779c4762a1bSJed Brown if (thi->no_slip && k == 0) { 780c4762a1bSJed Brown for (l=0; l<4; l++) n[l].u = n[l].v = 0; 781c4762a1bSJed Brown /* The first 4 basis functions lie on the bottom layer, so their contribution is exactly 0, hence we can skip them */ 782c4762a1bSJed Brown ls = 4; 783c4762a1bSJed Brown } 784c4762a1bSJed Brown for (q=0; q<8; q++) { 785c4762a1bSJed Brown PetscReal dz[3],phi[8],dphi[8][3],jw,eta,deta; 786c4762a1bSJed Brown PetscScalar du[3],dv[3],u,v; 787c4762a1bSJed Brown HexGrad(HexQDeriv[q],zn,dz); 788c4762a1bSJed Brown HexComputeGeometry(q,hx,hy,dz,phi,dphi,&jw); 789c4762a1bSJed Brown PointwiseNonlinearity(thi,n,phi,dphi,&u,&v,du,dv,&eta,&deta); 790c4762a1bSJed Brown jw /= thi->rhog; /* scales residuals to be O(1) */ 791c4762a1bSJed Brown if (q == 0) etabase = eta; 792c4762a1bSJed Brown RangeUpdate(&etamin,&etamax,eta); 793c4762a1bSJed Brown for (l=ls; l<8; l++) { /* test functions */ 794c4762a1bSJed Brown const PetscReal ds[2] = {-PetscSinReal(thi->alpha),0}; 795c4762a1bSJed Brown const PetscReal pp = phi[l],*dp = dphi[l]; 796c4762a1bSJed Brown fn[l]->u += dp[0]*jw*eta*(4.*du[0]+2.*dv[1]) + dp[1]*jw*eta*(du[1]+dv[0]) + dp[2]*jw*eta*du[2] + pp*jw*thi->rhog*ds[0]; 797c4762a1bSJed Brown fn[l]->v += dp[1]*jw*eta*(2.*du[0]+4.*dv[1]) + dp[0]*jw*eta*(du[1]+dv[0]) + dp[2]*jw*eta*dv[2] + pp*jw*thi->rhog*ds[1]; 798c4762a1bSJed Brown } 799c4762a1bSJed Brown } 800c4762a1bSJed Brown if (k == 0) { /* we are on a bottom face */ 801c4762a1bSJed Brown if (thi->no_slip) { 802c4762a1bSJed Brown /* Note: Non-Galerkin coarse grid operators are very sensitive to the scaling of Dirichlet boundary 803c4762a1bSJed Brown * conditions. After shenanigans above, etabase contains the effective viscosity at the closest quadrature 804c4762a1bSJed Brown * point to the bed. We want the diagonal entry in the Dirichlet condition to have similar magnitude to the 805c4762a1bSJed Brown * diagonal entry corresponding to the adjacent node. The fundamental scaling of the viscous part is in 806c4762a1bSJed Brown * diagu, diagv below. This scaling is easy to recognize by considering the finite difference operator after 807c4762a1bSJed Brown * scaling by element size. The no-slip Dirichlet condition is scaled by this factor, and also in the 808c4762a1bSJed Brown * assembled matrix (see the similar block in THIJacobianLocal). 809c4762a1bSJed Brown * 810c4762a1bSJed Brown * Note that the residual at this Dirichlet node is linear in the state at this node, but also depends 811c4762a1bSJed Brown * (nonlinearly in general) on the neighboring interior nodes through the local viscosity. This will make 812c4762a1bSJed Brown * a matrix-free Jacobian have extra entries in the corresponding row. We assemble only the diagonal part, 813c4762a1bSJed Brown * so the solution will exactly satisfy the boundary condition after the first linear iteration. 814c4762a1bSJed Brown */ 815c4762a1bSJed Brown const PetscReal hz = PetscRealPart(pn[0].h)/(zm-1.); 816c4762a1bSJed Brown const PetscScalar diagu = 2*etabase/thi->rhog*(hx*hy/hz + hx*hz/hy + 4*hy*hz/hx),diagv = 2*etabase/thi->rhog*(hx*hy/hz + 4*hx*hz/hy + hy*hz/hx); 817c4762a1bSJed Brown fn[0]->u = thi->dirichlet_scale*diagu*x[i][j][k].u; 818c4762a1bSJed Brown fn[0]->v = thi->dirichlet_scale*diagv*x[i][j][k].v; 819c4762a1bSJed Brown } else { /* Integrate over bottom face to apply boundary condition */ 820c4762a1bSJed Brown for (q=0; q<4; q++) { 821c4762a1bSJed Brown const PetscReal jw = 0.25*hx*hy/thi->rhog,*phi = QuadQInterp[q]; 822c4762a1bSJed Brown PetscScalar u =0,v=0,rbeta2=0; 823c4762a1bSJed Brown PetscReal beta2,dbeta2; 824c4762a1bSJed Brown for (l=0; l<4; l++) { 825c4762a1bSJed Brown u += phi[l]*n[l].u; 826c4762a1bSJed Brown v += phi[l]*n[l].v; 827c4762a1bSJed Brown rbeta2 += phi[l]*pn[l].beta2; 828c4762a1bSJed Brown } 829c4762a1bSJed Brown THIFriction(thi,PetscRealPart(rbeta2),PetscRealPart(u*u+v*v)/2,&beta2,&dbeta2); 830c4762a1bSJed Brown RangeUpdate(&beta2min,&beta2max,beta2); 831c4762a1bSJed Brown for (l=0; l<4; l++) { 832c4762a1bSJed Brown const PetscReal pp = phi[l]; 833c4762a1bSJed Brown fn[ls+l]->u += pp*jw*beta2*u; 834c4762a1bSJed Brown fn[ls+l]->v += pp*jw*beta2*v; 835c4762a1bSJed Brown } 836c4762a1bSJed Brown } 837c4762a1bSJed Brown } 838c4762a1bSJed Brown } 839c4762a1bSJed Brown } 840c4762a1bSJed Brown } 841c4762a1bSJed Brown } 842c4762a1bSJed Brown 8435f80ce2aSJacob Faibussowitsch CHKERRQ(THIDARestorePrm(info->da,&prm)); 844c4762a1bSJed Brown 8455f80ce2aSJacob Faibussowitsch CHKERRQ(PRangeMinMax(&thi->eta,etamin,etamax)); 8465f80ce2aSJacob Faibussowitsch CHKERRQ(PRangeMinMax(&thi->beta2,beta2min,beta2max)); 847c4762a1bSJed Brown PetscFunctionReturn(0); 848c4762a1bSJed Brown } 849c4762a1bSJed Brown 850c4762a1bSJed Brown static PetscErrorCode THIMatrixStatistics(THI thi,Mat B,PetscViewer viewer) 851c4762a1bSJed Brown { 852c4762a1bSJed Brown PetscReal nrm; 853c4762a1bSJed Brown PetscInt m; 854c4762a1bSJed Brown PetscMPIInt rank; 855c4762a1bSJed Brown 856c4762a1bSJed Brown PetscFunctionBeginUser; 8575f80ce2aSJacob Faibussowitsch CHKERRQ(MatNorm(B,NORM_FROBENIUS,&nrm)); 8585f80ce2aSJacob Faibussowitsch CHKERRQ(MatGetSize(B,&m,0)); 8595f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B),&rank)); 860dd400576SPatrick Sanan if (rank == 0) { 861c4762a1bSJed Brown PetscScalar val0,val2; 8625f80ce2aSJacob Faibussowitsch CHKERRQ(MatGetValue(B,0,0,&val0)); 8635f80ce2aSJacob Faibussowitsch CHKERRQ(MatGetValue(B,2,2,&val2)); 8645f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer,"Matrix dim %D norm %8.2e (0,0) %8.2e (2,2) %8.2e %8.2e <= eta <= %8.2e %8.2e <= beta2 <= %8.2e\n",m,(double)nrm,(double)PetscRealPart(val0),(double)PetscRealPart(val2),(double)thi->eta.cmin,(double)thi->eta.cmax,(double)thi->beta2.cmin,(double)thi->beta2.cmax)); 865c4762a1bSJed Brown } 866c4762a1bSJed Brown PetscFunctionReturn(0); 867c4762a1bSJed Brown } 868c4762a1bSJed Brown 869c4762a1bSJed Brown static PetscErrorCode THISurfaceStatistics(DM da,Vec X,PetscReal *min,PetscReal *max,PetscReal *mean) 870c4762a1bSJed Brown { 871c4762a1bSJed Brown Node ***x; 872c4762a1bSJed Brown PetscInt i,j,xs,ys,zs,xm,ym,zm,mx,my,mz; 873c4762a1bSJed Brown PetscReal umin = 1e100,umax=-1e100; 874c4762a1bSJed Brown PetscScalar usum = 0.0,gusum; 875c4762a1bSJed Brown 876c4762a1bSJed Brown PetscFunctionBeginUser; 877c4762a1bSJed Brown *min = *max = *mean = 0; 8785f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAGetInfo(da,0, &mz,&my,&mx, 0,0,0, 0,0,0,0,0,0)); 8795f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAGetCorners(da,&zs,&ys,&xs,&zm,&ym,&xm)); 8802c71b3e2SJacob Faibussowitsch PetscCheckFalse(zs != 0 || zm != mz,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Unexpected decomposition"); 8815f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAVecGetArray(da,X,&x)); 882c4762a1bSJed Brown for (i=xs; i<xs+xm; i++) { 883c4762a1bSJed Brown for (j=ys; j<ys+ym; j++) { 884c4762a1bSJed Brown PetscReal u = PetscRealPart(x[i][j][zm-1].u); 885c4762a1bSJed Brown RangeUpdate(&umin,&umax,u); 886c4762a1bSJed Brown usum += u; 887c4762a1bSJed Brown } 888c4762a1bSJed Brown } 8895f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAVecRestoreArray(da,X,&x)); 8905f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Allreduce(&umin,min,1,MPIU_REAL,MPIU_MIN,PetscObjectComm((PetscObject)da))); 8915f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Allreduce(&umax,max,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)da))); 8925f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Allreduce(&usum,&gusum,1,MPIU_SCALAR,MPIU_SUM,PetscObjectComm((PetscObject)da))); 893c4762a1bSJed Brown *mean = PetscRealPart(gusum) / (mx*my); 894c4762a1bSJed Brown PetscFunctionReturn(0); 895c4762a1bSJed Brown } 896c4762a1bSJed Brown 897c4762a1bSJed Brown static PetscErrorCode THISolveStatistics(THI thi,SNES snes,PetscInt coarsened,const char name[]) 898c4762a1bSJed Brown { 899c4762a1bSJed Brown MPI_Comm comm; 900c4762a1bSJed Brown Vec X; 901c4762a1bSJed Brown DM dm; 902c4762a1bSJed Brown 903c4762a1bSJed Brown PetscFunctionBeginUser; 9045f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectGetComm((PetscObject)thi,&comm)); 9055f80ce2aSJacob Faibussowitsch CHKERRQ(SNESGetSolution(snes,&X)); 9065f80ce2aSJacob Faibussowitsch CHKERRQ(SNESGetDM(snes,&dm)); 9075f80ce2aSJacob Faibussowitsch CHKERRQ(PetscPrintf(comm,"Solution statistics after solve: %s\n",name)); 908c4762a1bSJed Brown { 909c4762a1bSJed Brown PetscInt its,lits; 910c4762a1bSJed Brown SNESConvergedReason reason; 9115f80ce2aSJacob Faibussowitsch CHKERRQ(SNESGetIterationNumber(snes,&its)); 9125f80ce2aSJacob Faibussowitsch CHKERRQ(SNESGetConvergedReason(snes,&reason)); 9135f80ce2aSJacob Faibussowitsch CHKERRQ(SNESGetLinearSolveIterations(snes,&lits)); 9145f80ce2aSJacob Faibussowitsch CHKERRQ(PetscPrintf(comm,"%s: Number of SNES iterations = %D, total linear iterations = %D\n",SNESConvergedReasons[reason],its,lits)); 915c4762a1bSJed Brown } 916c4762a1bSJed Brown { 917c4762a1bSJed Brown PetscReal nrm2,tmin[3]={1e100,1e100,1e100},tmax[3]={-1e100,-1e100,-1e100},min[3],max[3]; 918c4762a1bSJed Brown PetscInt i,j,m; 919c4762a1bSJed Brown const PetscScalar *x; 9205f80ce2aSJacob Faibussowitsch CHKERRQ(VecNorm(X,NORM_2,&nrm2)); 9215f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetLocalSize(X,&m)); 9225f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayRead(X,&x)); 923c4762a1bSJed Brown for (i=0; i<m; i+=2) { 924c4762a1bSJed Brown PetscReal u = PetscRealPart(x[i]),v = PetscRealPart(x[i+1]),c = PetscSqrtReal(u*u+v*v); 925c4762a1bSJed Brown tmin[0] = PetscMin(u,tmin[0]); 926c4762a1bSJed Brown tmin[1] = PetscMin(v,tmin[1]); 927c4762a1bSJed Brown tmin[2] = PetscMin(c,tmin[2]); 928c4762a1bSJed Brown tmax[0] = PetscMax(u,tmax[0]); 929c4762a1bSJed Brown tmax[1] = PetscMax(v,tmax[1]); 930c4762a1bSJed Brown tmax[2] = PetscMax(c,tmax[2]); 931c4762a1bSJed Brown } 9325f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayRead(X,&x)); 9335f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Allreduce(tmin,min,3,MPIU_REAL,MPIU_MIN,PetscObjectComm((PetscObject)thi))); 9345f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Allreduce(tmax,max,3,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)thi))); 935c4762a1bSJed Brown /* Dimensionalize to meters/year */ 936c4762a1bSJed Brown nrm2 *= thi->units->year / thi->units->meter; 937c4762a1bSJed Brown for (j=0; j<3; j++) { 938c4762a1bSJed Brown min[j] *= thi->units->year / thi->units->meter; 939c4762a1bSJed Brown max[j] *= thi->units->year / thi->units->meter; 940c4762a1bSJed Brown } 941c4762a1bSJed Brown if (min[0] == 0.0) min[0] = 0.0; 9425f80ce2aSJacob Faibussowitsch CHKERRQ(PetscPrintf(comm,"|X|_2 %g %g <= u <= %g %g <= v <= %g %g <= c <= %g \n",(double)nrm2,(double)min[0],(double)max[0],(double)min[1],(double)max[1],(double)min[2],(double)max[2])); 943c4762a1bSJed Brown { 944c4762a1bSJed Brown PetscReal umin,umax,umean; 9455f80ce2aSJacob Faibussowitsch CHKERRQ(THISurfaceStatistics(dm,X,&umin,&umax,&umean)); 946c4762a1bSJed Brown umin *= thi->units->year / thi->units->meter; 947c4762a1bSJed Brown umax *= thi->units->year / thi->units->meter; 948c4762a1bSJed Brown umean *= thi->units->year / thi->units->meter; 9495f80ce2aSJacob Faibussowitsch CHKERRQ(PetscPrintf(comm,"Surface statistics: u in [%12.6e, %12.6e] mean %12.6e\n",(double)umin,(double)umax,(double)umean)); 950c4762a1bSJed Brown } 951c4762a1bSJed Brown /* These values stay nondimensional */ 9525f80ce2aSJacob Faibussowitsch CHKERRQ(PetscPrintf(comm,"Global eta range %g to %g converged range %g to %g\n",(double)thi->eta.min,(double)thi->eta.max,(double)thi->eta.cmin,(double)thi->eta.cmax)); 9535f80ce2aSJacob Faibussowitsch CHKERRQ(PetscPrintf(comm,"Global beta2 range %g to %g converged range %g to %g\n",(double)thi->beta2.min,(double)thi->beta2.max,(double)thi->beta2.cmin,(double)thi->beta2.cmax)); 954c4762a1bSJed Brown } 955c4762a1bSJed Brown PetscFunctionReturn(0); 956c4762a1bSJed Brown } 957c4762a1bSJed Brown 958c4762a1bSJed Brown static PetscErrorCode THIJacobianLocal_2D(DMDALocalInfo *info,Node **x,Mat J,Mat B,THI thi) 959c4762a1bSJed Brown { 960c4762a1bSJed Brown PetscInt xs,ys,xm,ym,i,j,q,l,ll; 961c4762a1bSJed Brown PetscReal hx,hy; 962c4762a1bSJed Brown PrmNode **prm; 963c4762a1bSJed Brown 964c4762a1bSJed Brown PetscFunctionBeginUser; 965c4762a1bSJed Brown xs = info->ys; 966c4762a1bSJed Brown ys = info->xs; 967c4762a1bSJed Brown xm = info->ym; 968c4762a1bSJed Brown ym = info->xm; 969c4762a1bSJed Brown hx = thi->Lx / info->my; 970c4762a1bSJed Brown hy = thi->Ly / info->mx; 971c4762a1bSJed Brown 9725f80ce2aSJacob Faibussowitsch CHKERRQ(MatZeroEntries(B)); 9735f80ce2aSJacob Faibussowitsch CHKERRQ(THIDAGetPrm(info->da,&prm)); 974c4762a1bSJed Brown 975c4762a1bSJed Brown for (i=xs; i<xs+xm; i++) { 976c4762a1bSJed Brown for (j=ys; j<ys+ym; j++) { 977c4762a1bSJed Brown Node n[4]; 978c4762a1bSJed Brown PrmNode pn[4]; 979c4762a1bSJed Brown PetscScalar Ke[4*2][4*2]; 980c4762a1bSJed Brown QuadExtract(prm,i,j,pn); 981c4762a1bSJed Brown QuadExtract(x,i,j,n); 9825f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMemzero(Ke,sizeof(Ke))); 983c4762a1bSJed Brown for (q=0; q<4; q++) { 984c4762a1bSJed Brown PetscReal phi[4],dphi[4][2],jw,eta,deta,beta2,dbeta2; 985c4762a1bSJed Brown PetscScalar u,v,du[2],dv[2],h = 0,rbeta2 = 0; 986c4762a1bSJed Brown for (l=0; l<4; l++) { 987c4762a1bSJed Brown phi[l] = QuadQInterp[q][l]; 988c4762a1bSJed Brown dphi[l][0] = QuadQDeriv[q][l][0]*2./hx; 989c4762a1bSJed Brown dphi[l][1] = QuadQDeriv[q][l][1]*2./hy; 990c4762a1bSJed Brown h += phi[l] * pn[l].h; 991c4762a1bSJed Brown rbeta2 += phi[l] * pn[l].beta2; 992c4762a1bSJed Brown } 993c4762a1bSJed Brown jw = 0.25*hx*hy / thi->rhog; /* rhog is only scaling */ 994c4762a1bSJed Brown PointwiseNonlinearity2D(thi,n,phi,dphi,&u,&v,du,dv,&eta,&deta); 995c4762a1bSJed Brown THIFriction(thi,PetscRealPart(rbeta2),PetscRealPart(u*u+v*v)/2,&beta2,&dbeta2); 996c4762a1bSJed Brown for (l=0; l<4; l++) { 997c4762a1bSJed Brown const PetscReal pp = phi[l],*dp = dphi[l]; 998c4762a1bSJed Brown for (ll=0; ll<4; ll++) { 999c4762a1bSJed Brown const PetscReal ppl = phi[ll],*dpl = dphi[ll]; 1000c4762a1bSJed Brown PetscScalar dgdu,dgdv; 1001c4762a1bSJed Brown dgdu = 2.*du[0]*dpl[0] + dv[1]*dpl[0] + 0.5*(du[1]+dv[0])*dpl[1]; 1002c4762a1bSJed Brown dgdv = 2.*dv[1]*dpl[1] + du[0]*dpl[1] + 0.5*(du[1]+dv[0])*dpl[0]; 1003c4762a1bSJed Brown /* Picard part */ 1004c4762a1bSJed Brown Ke[l*2+0][ll*2+0] += dp[0]*jw*eta*4.*dpl[0] + dp[1]*jw*eta*dpl[1] + pp*jw*(beta2/h)*ppl*thi->ssa_friction_scale; 1005c4762a1bSJed Brown Ke[l*2+0][ll*2+1] += dp[0]*jw*eta*2.*dpl[1] + dp[1]*jw*eta*dpl[0]; 1006c4762a1bSJed Brown Ke[l*2+1][ll*2+0] += dp[1]*jw*eta*2.*dpl[0] + dp[0]*jw*eta*dpl[1]; 1007c4762a1bSJed Brown Ke[l*2+1][ll*2+1] += dp[1]*jw*eta*4.*dpl[1] + dp[0]*jw*eta*dpl[0] + pp*jw*(beta2/h)*ppl*thi->ssa_friction_scale; 1008c4762a1bSJed Brown /* extra Newton terms */ 1009c4762a1bSJed Brown Ke[l*2+0][ll*2+0] += dp[0]*jw*deta*dgdu*(4.*du[0]+2.*dv[1]) + dp[1]*jw*deta*dgdu*(du[1]+dv[0]) + pp*jw*(dbeta2/h)*u*u*ppl*thi->ssa_friction_scale; 1010c4762a1bSJed Brown Ke[l*2+0][ll*2+1] += dp[0]*jw*deta*dgdv*(4.*du[0]+2.*dv[1]) + dp[1]*jw*deta*dgdv*(du[1]+dv[0]) + pp*jw*(dbeta2/h)*u*v*ppl*thi->ssa_friction_scale; 1011c4762a1bSJed Brown Ke[l*2+1][ll*2+0] += dp[1]*jw*deta*dgdu*(4.*dv[1]+2.*du[0]) + dp[0]*jw*deta*dgdu*(du[1]+dv[0]) + pp*jw*(dbeta2/h)*v*u*ppl*thi->ssa_friction_scale; 1012c4762a1bSJed Brown Ke[l*2+1][ll*2+1] += dp[1]*jw*deta*dgdv*(4.*dv[1]+2.*du[0]) + dp[0]*jw*deta*dgdv*(du[1]+dv[0]) + pp*jw*(dbeta2/h)*v*v*ppl*thi->ssa_friction_scale; 1013c4762a1bSJed Brown } 1014c4762a1bSJed Brown } 1015c4762a1bSJed Brown } 1016c4762a1bSJed Brown { 1017c4762a1bSJed Brown const MatStencil rc[4] = {{0,i,j,0},{0,i+1,j,0},{0,i+1,j+1,0},{0,i,j+1,0}}; 10185f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetValuesBlockedStencil(B,4,rc,4,rc,&Ke[0][0],ADD_VALUES)); 1019c4762a1bSJed Brown } 1020c4762a1bSJed Brown } 1021c4762a1bSJed Brown } 10225f80ce2aSJacob Faibussowitsch CHKERRQ(THIDARestorePrm(info->da,&prm)); 1023c4762a1bSJed Brown 10245f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 10255f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 10265f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetOption(B,MAT_SYMMETRIC,PETSC_TRUE)); 10275f80ce2aSJacob Faibussowitsch if (thi->verbose) CHKERRQ(THIMatrixStatistics(thi,B,PETSC_VIEWER_STDOUT_WORLD)); 1028c4762a1bSJed Brown PetscFunctionReturn(0); 1029c4762a1bSJed Brown } 1030c4762a1bSJed Brown 1031c4762a1bSJed Brown static PetscErrorCode THIJacobianLocal_3D(DMDALocalInfo *info,Node ***x,Mat B,THI thi,THIAssemblyMode amode) 1032c4762a1bSJed Brown { 1033c4762a1bSJed Brown PetscInt xs,ys,xm,ym,zm,i,j,k,q,l,ll; 1034c4762a1bSJed Brown PetscReal hx,hy; 1035c4762a1bSJed Brown PrmNode **prm; 1036c4762a1bSJed Brown 1037c4762a1bSJed Brown PetscFunctionBeginUser; 1038c4762a1bSJed Brown xs = info->zs; 1039c4762a1bSJed Brown ys = info->ys; 1040c4762a1bSJed Brown xm = info->zm; 1041c4762a1bSJed Brown ym = info->ym; 1042c4762a1bSJed Brown zm = info->xm; 1043c4762a1bSJed Brown hx = thi->Lx / info->mz; 1044c4762a1bSJed Brown hy = thi->Ly / info->my; 1045c4762a1bSJed Brown 10465f80ce2aSJacob Faibussowitsch CHKERRQ(MatZeroEntries(B)); 10475f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetOption(B,MAT_SUBSET_OFF_PROC_ENTRIES,PETSC_TRUE)); 10485f80ce2aSJacob Faibussowitsch CHKERRQ(THIDAGetPrm(info->da,&prm)); 1049c4762a1bSJed Brown 1050c4762a1bSJed Brown for (i=xs; i<xs+xm; i++) { 1051c4762a1bSJed Brown for (j=ys; j<ys+ym; j++) { 1052c4762a1bSJed Brown PrmNode pn[4]; 1053c4762a1bSJed Brown QuadExtract(prm,i,j,pn); 1054c4762a1bSJed Brown for (k=0; k<zm-1; k++) { 1055c4762a1bSJed Brown Node n[8]; 1056c4762a1bSJed Brown PetscReal zn[8],etabase = 0; 1057c4762a1bSJed Brown PetscScalar Ke[8*2][8*2]; 1058c4762a1bSJed Brown PetscInt ls = 0; 1059c4762a1bSJed Brown 1060c4762a1bSJed Brown PrmHexGetZ(pn,k,zm,zn); 1061c4762a1bSJed Brown HexExtract(x,i,j,k,n); 10625f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMemzero(Ke,sizeof(Ke))); 1063c4762a1bSJed Brown if (thi->no_slip && k == 0) { 1064c4762a1bSJed Brown for (l=0; l<4; l++) n[l].u = n[l].v = 0; 1065c4762a1bSJed Brown ls = 4; 1066c4762a1bSJed Brown } 1067c4762a1bSJed Brown for (q=0; q<8; q++) { 1068c4762a1bSJed Brown PetscReal dz[3],phi[8],dphi[8][3],jw,eta,deta; 1069c4762a1bSJed Brown PetscScalar du[3],dv[3],u,v; 1070c4762a1bSJed Brown HexGrad(HexQDeriv[q],zn,dz); 1071c4762a1bSJed Brown HexComputeGeometry(q,hx,hy,dz,phi,dphi,&jw); 1072c4762a1bSJed Brown PointwiseNonlinearity(thi,n,phi,dphi,&u,&v,du,dv,&eta,&deta); 1073c4762a1bSJed Brown jw /= thi->rhog; /* residuals are scaled by this factor */ 1074c4762a1bSJed Brown if (q == 0) etabase = eta; 1075c4762a1bSJed Brown for (l=ls; l<8; l++) { /* test functions */ 1076c4762a1bSJed Brown const PetscReal *PETSC_RESTRICT dp = dphi[l]; 1077c4762a1bSJed Brown #if USE_SSE2_KERNELS 1078c4762a1bSJed Brown /* gcc (up to my 4.5 snapshot) is really bad at hoisting intrinsics so we do it manually */ 1079c4762a1bSJed Brown __m128d 1080c4762a1bSJed Brown p4 = _mm_set1_pd(4),p2 = _mm_set1_pd(2),p05 = _mm_set1_pd(0.5), 1081c4762a1bSJed Brown p42 = _mm_setr_pd(4,2),p24 = _mm_shuffle_pd(p42,p42,_MM_SHUFFLE2(0,1)), 1082c4762a1bSJed Brown du0 = _mm_set1_pd(du[0]),du1 = _mm_set1_pd(du[1]),du2 = _mm_set1_pd(du[2]), 1083c4762a1bSJed Brown dv0 = _mm_set1_pd(dv[0]),dv1 = _mm_set1_pd(dv[1]),dv2 = _mm_set1_pd(dv[2]), 1084c4762a1bSJed Brown jweta = _mm_set1_pd(jw*eta),jwdeta = _mm_set1_pd(jw*deta), 1085c4762a1bSJed Brown dp0 = _mm_set1_pd(dp[0]),dp1 = _mm_set1_pd(dp[1]),dp2 = _mm_set1_pd(dp[2]), 1086c4762a1bSJed Brown dp0jweta = _mm_mul_pd(dp0,jweta),dp1jweta = _mm_mul_pd(dp1,jweta),dp2jweta = _mm_mul_pd(dp2,jweta), 1087c4762a1bSJed Brown p4du0p2dv1 = _mm_add_pd(_mm_mul_pd(p4,du0),_mm_mul_pd(p2,dv1)), /* 4 du0 + 2 dv1 */ 1088c4762a1bSJed Brown p4dv1p2du0 = _mm_add_pd(_mm_mul_pd(p4,dv1),_mm_mul_pd(p2,du0)), /* 4 dv1 + 2 du0 */ 1089c4762a1bSJed Brown pdu2dv2 = _mm_unpacklo_pd(du2,dv2), /* [du2, dv2] */ 1090c4762a1bSJed Brown du1pdv0 = _mm_add_pd(du1,dv0), /* du1 + dv0 */ 1091c4762a1bSJed Brown t1 = _mm_mul_pd(dp0,p4du0p2dv1), /* dp0 (4 du0 + 2 dv1) */ 1092c4762a1bSJed Brown t2 = _mm_mul_pd(dp1,p4dv1p2du0); /* dp1 (4 dv1 + 2 du0) */ 1093c4762a1bSJed Brown 1094c4762a1bSJed Brown #endif 1095c4762a1bSJed Brown #if defined COMPUTE_LOWER_TRIANGULAR /* The element matrices are always symmetric so computing the lower-triangular part is not necessary */ 1096c4762a1bSJed Brown for (ll=ls; ll<8; ll++) { /* trial functions */ 1097c4762a1bSJed Brown #else 1098c4762a1bSJed Brown for (ll=l; ll<8; ll++) { 1099c4762a1bSJed Brown #endif 1100c4762a1bSJed Brown const PetscReal *PETSC_RESTRICT dpl = dphi[ll]; 1101c4762a1bSJed Brown if (amode == THIASSEMBLY_TRIDIAGONAL && (l-ll)%4) continue; /* these entries would not be inserted */ 1102c4762a1bSJed Brown #if !USE_SSE2_KERNELS 1103c4762a1bSJed Brown /* The analytic Jacobian in nice, easy-to-read form */ 1104c4762a1bSJed Brown { 1105c4762a1bSJed Brown PetscScalar dgdu,dgdv; 1106c4762a1bSJed Brown dgdu = 2.*du[0]*dpl[0] + dv[1]*dpl[0] + 0.5*(du[1]+dv[0])*dpl[1] + 0.5*du[2]*dpl[2]; 1107c4762a1bSJed Brown dgdv = 2.*dv[1]*dpl[1] + du[0]*dpl[1] + 0.5*(du[1]+dv[0])*dpl[0] + 0.5*dv[2]*dpl[2]; 1108c4762a1bSJed Brown /* Picard part */ 1109c4762a1bSJed Brown Ke[l*2+0][ll*2+0] += dp[0]*jw*eta*4.*dpl[0] + dp[1]*jw*eta*dpl[1] + dp[2]*jw*eta*dpl[2]; 1110c4762a1bSJed Brown Ke[l*2+0][ll*2+1] += dp[0]*jw*eta*2.*dpl[1] + dp[1]*jw*eta*dpl[0]; 1111c4762a1bSJed Brown Ke[l*2+1][ll*2+0] += dp[1]*jw*eta*2.*dpl[0] + dp[0]*jw*eta*dpl[1]; 1112c4762a1bSJed Brown Ke[l*2+1][ll*2+1] += dp[1]*jw*eta*4.*dpl[1] + dp[0]*jw*eta*dpl[0] + dp[2]*jw*eta*dpl[2]; 1113c4762a1bSJed Brown /* extra Newton terms */ 1114c4762a1bSJed Brown Ke[l*2+0][ll*2+0] += dp[0]*jw*deta*dgdu*(4.*du[0]+2.*dv[1]) + dp[1]*jw*deta*dgdu*(du[1]+dv[0]) + dp[2]*jw*deta*dgdu*du[2]; 1115c4762a1bSJed Brown Ke[l*2+0][ll*2+1] += dp[0]*jw*deta*dgdv*(4.*du[0]+2.*dv[1]) + dp[1]*jw*deta*dgdv*(du[1]+dv[0]) + dp[2]*jw*deta*dgdv*du[2]; 1116c4762a1bSJed Brown Ke[l*2+1][ll*2+0] += dp[1]*jw*deta*dgdu*(4.*dv[1]+2.*du[0]) + dp[0]*jw*deta*dgdu*(du[1]+dv[0]) + dp[2]*jw*deta*dgdu*dv[2]; 1117c4762a1bSJed Brown Ke[l*2+1][ll*2+1] += dp[1]*jw*deta*dgdv*(4.*dv[1]+2.*du[0]) + dp[0]*jw*deta*dgdv*(du[1]+dv[0]) + dp[2]*jw*deta*dgdv*dv[2]; 1118c4762a1bSJed Brown } 1119c4762a1bSJed Brown #else 1120c4762a1bSJed Brown /* This SSE2 code is an exact replica of above, but uses explicit packed instructions for some speed 1121c4762a1bSJed Brown * benefit. On my hardware, these intrinsics are almost twice as fast as above, reducing total assembly cost 1122c4762a1bSJed Brown * by 25 to 30 percent. */ 1123c4762a1bSJed Brown { 1124c4762a1bSJed Brown __m128d 1125c4762a1bSJed Brown keu = _mm_loadu_pd(&Ke[l*2+0][ll*2+0]), 1126c4762a1bSJed Brown kev = _mm_loadu_pd(&Ke[l*2+1][ll*2+0]), 1127c4762a1bSJed Brown dpl01 = _mm_loadu_pd(&dpl[0]),dpl10 = _mm_shuffle_pd(dpl01,dpl01,_MM_SHUFFLE2(0,1)),dpl2 = _mm_set_sd(dpl[2]), 1128c4762a1bSJed Brown t0,t3,pdgduv; 1129c4762a1bSJed Brown keu = _mm_add_pd(keu,_mm_add_pd(_mm_mul_pd(_mm_mul_pd(dp0jweta,p42),dpl01), 1130c4762a1bSJed Brown _mm_add_pd(_mm_mul_pd(dp1jweta,dpl10), 1131c4762a1bSJed Brown _mm_mul_pd(dp2jweta,dpl2)))); 1132c4762a1bSJed Brown kev = _mm_add_pd(kev,_mm_add_pd(_mm_mul_pd(_mm_mul_pd(dp1jweta,p24),dpl01), 1133c4762a1bSJed Brown _mm_add_pd(_mm_mul_pd(dp0jweta,dpl10), 1134c4762a1bSJed Brown _mm_mul_pd(dp2jweta,_mm_shuffle_pd(dpl2,dpl2,_MM_SHUFFLE2(0,1)))))); 1135c4762a1bSJed Brown pdgduv = _mm_mul_pd(p05,_mm_add_pd(_mm_add_pd(_mm_mul_pd(p42,_mm_mul_pd(du0,dpl01)), 1136c4762a1bSJed Brown _mm_mul_pd(p24,_mm_mul_pd(dv1,dpl01))), 1137c4762a1bSJed Brown _mm_add_pd(_mm_mul_pd(du1pdv0,dpl10), 1138c4762a1bSJed Brown _mm_mul_pd(pdu2dv2,_mm_set1_pd(dpl[2]))))); /* [dgdu, dgdv] */ 1139c4762a1bSJed Brown t0 = _mm_mul_pd(jwdeta,pdgduv); /* jw deta [dgdu, dgdv] */ 1140c4762a1bSJed Brown t3 = _mm_mul_pd(t0,du1pdv0); /* t0 (du1 + dv0) */ 1141c4762a1bSJed Brown _mm_storeu_pd(&Ke[l*2+0][ll*2+0],_mm_add_pd(keu,_mm_add_pd(_mm_mul_pd(t1,t0), 1142c4762a1bSJed Brown _mm_add_pd(_mm_mul_pd(dp1,t3), 1143c4762a1bSJed Brown _mm_mul_pd(t0,_mm_mul_pd(dp2,du2)))))); 1144c4762a1bSJed Brown _mm_storeu_pd(&Ke[l*2+1][ll*2+0],_mm_add_pd(kev,_mm_add_pd(_mm_mul_pd(t2,t0), 1145c4762a1bSJed Brown _mm_add_pd(_mm_mul_pd(dp0,t3), 1146c4762a1bSJed Brown _mm_mul_pd(t0,_mm_mul_pd(dp2,dv2)))))); 1147c4762a1bSJed Brown } 1148c4762a1bSJed Brown #endif 1149c4762a1bSJed Brown } 1150c4762a1bSJed Brown } 1151c4762a1bSJed Brown } 1152c4762a1bSJed Brown if (k == 0) { /* on a bottom face */ 1153c4762a1bSJed Brown if (thi->no_slip) { 1154c4762a1bSJed Brown const PetscReal hz = PetscRealPart(pn[0].h)/(zm-1); 1155c4762a1bSJed Brown const PetscScalar diagu = 2*etabase/thi->rhog*(hx*hy/hz + hx*hz/hy + 4*hy*hz/hx),diagv = 2*etabase/thi->rhog*(hx*hy/hz + 4*hx*hz/hy + hy*hz/hx); 1156c4762a1bSJed Brown Ke[0][0] = thi->dirichlet_scale*diagu; 1157c4762a1bSJed Brown Ke[1][1] = thi->dirichlet_scale*diagv; 1158c4762a1bSJed Brown } else { 1159c4762a1bSJed Brown for (q=0; q<4; q++) { 1160c4762a1bSJed Brown const PetscReal jw = 0.25*hx*hy/thi->rhog,*phi = QuadQInterp[q]; 1161c4762a1bSJed Brown PetscScalar u =0,v=0,rbeta2=0; 1162c4762a1bSJed Brown PetscReal beta2,dbeta2; 1163c4762a1bSJed Brown for (l=0; l<4; l++) { 1164c4762a1bSJed Brown u += phi[l]*n[l].u; 1165c4762a1bSJed Brown v += phi[l]*n[l].v; 1166c4762a1bSJed Brown rbeta2 += phi[l]*pn[l].beta2; 1167c4762a1bSJed Brown } 1168c4762a1bSJed Brown THIFriction(thi,PetscRealPart(rbeta2),PetscRealPart(u*u+v*v)/2,&beta2,&dbeta2); 1169c4762a1bSJed Brown for (l=0; l<4; l++) { 1170c4762a1bSJed Brown const PetscReal pp = phi[l]; 1171c4762a1bSJed Brown for (ll=0; ll<4; ll++) { 1172c4762a1bSJed Brown const PetscReal ppl = phi[ll]; 1173c4762a1bSJed Brown Ke[l*2+0][ll*2+0] += pp*jw*beta2*ppl + pp*jw*dbeta2*u*u*ppl; 1174c4762a1bSJed Brown Ke[l*2+0][ll*2+1] += pp*jw*dbeta2*u*v*ppl; 1175c4762a1bSJed Brown Ke[l*2+1][ll*2+0] += pp*jw*dbeta2*v*u*ppl; 1176c4762a1bSJed Brown Ke[l*2+1][ll*2+1] += pp*jw*beta2*ppl + pp*jw*dbeta2*v*v*ppl; 1177c4762a1bSJed Brown } 1178c4762a1bSJed Brown } 1179c4762a1bSJed Brown } 1180c4762a1bSJed Brown } 1181c4762a1bSJed Brown } 1182c4762a1bSJed Brown { 1183c4762a1bSJed Brown const MatStencil rc[8] = {{i,j,k,0},{i+1,j,k,0},{i+1,j+1,k,0},{i,j+1,k,0},{i,j,k+1,0},{i+1,j,k+1,0},{i+1,j+1,k+1,0},{i,j+1,k+1,0}}; 1184c4762a1bSJed Brown if (amode == THIASSEMBLY_TRIDIAGONAL) { 1185c4762a1bSJed Brown for (l=0; l<4; l++) { /* Copy out each of the blocks, discarding horizontal coupling */ 1186c4762a1bSJed Brown const PetscInt l4 = l+4; 1187c4762a1bSJed Brown const MatStencil rcl[2] = {{rc[l].k,rc[l].j,rc[l].i,0},{rc[l4].k,rc[l4].j,rc[l4].i,0}}; 1188c4762a1bSJed Brown #if defined COMPUTE_LOWER_TRIANGULAR 1189c4762a1bSJed Brown const PetscScalar Kel[4][4] = {{Ke[2*l+0][2*l+0] ,Ke[2*l+0][2*l+1] ,Ke[2*l+0][2*l4+0] ,Ke[2*l+0][2*l4+1]}, 1190c4762a1bSJed Brown {Ke[2*l+1][2*l+0] ,Ke[2*l+1][2*l+1] ,Ke[2*l+1][2*l4+0] ,Ke[2*l+1][2*l4+1]}, 1191c4762a1bSJed Brown {Ke[2*l4+0][2*l+0],Ke[2*l4+0][2*l+1],Ke[2*l4+0][2*l4+0],Ke[2*l4+0][2*l4+1]}, 1192c4762a1bSJed Brown {Ke[2*l4+1][2*l+0],Ke[2*l4+1][2*l+1],Ke[2*l4+1][2*l4+0],Ke[2*l4+1][2*l4+1]}}; 1193c4762a1bSJed Brown #else 1194c4762a1bSJed Brown /* Same as above except for the lower-left block */ 1195c4762a1bSJed Brown const PetscScalar Kel[4][4] = {{Ke[2*l+0][2*l+0] ,Ke[2*l+0][2*l+1] ,Ke[2*l+0][2*l4+0] ,Ke[2*l+0][2*l4+1]}, 1196c4762a1bSJed Brown {Ke[2*l+1][2*l+0] ,Ke[2*l+1][2*l+1] ,Ke[2*l+1][2*l4+0] ,Ke[2*l+1][2*l4+1]}, 1197c4762a1bSJed Brown {Ke[2*l+0][2*l4+0],Ke[2*l+1][2*l4+0],Ke[2*l4+0][2*l4+0],Ke[2*l4+0][2*l4+1]}, 1198c4762a1bSJed Brown {Ke[2*l+0][2*l4+1],Ke[2*l+1][2*l4+1],Ke[2*l4+1][2*l4+0],Ke[2*l4+1][2*l4+1]}}; 1199c4762a1bSJed Brown #endif 12005f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetValuesBlockedStencil(B,2,rcl,2,rcl,&Kel[0][0],ADD_VALUES)); 1201c4762a1bSJed Brown } 1202c4762a1bSJed Brown } else { 1203c4762a1bSJed Brown #if !defined COMPUTE_LOWER_TRIANGULAR /* fill in lower-triangular part, this is really cheap compared to computing the entries */ 1204c4762a1bSJed Brown for (l=0; l<8; l++) { 1205c4762a1bSJed Brown for (ll=l+1; ll<8; ll++) { 1206c4762a1bSJed Brown Ke[ll*2+0][l*2+0] = Ke[l*2+0][ll*2+0]; 1207c4762a1bSJed Brown Ke[ll*2+1][l*2+0] = Ke[l*2+0][ll*2+1]; 1208c4762a1bSJed Brown Ke[ll*2+0][l*2+1] = Ke[l*2+1][ll*2+0]; 1209c4762a1bSJed Brown Ke[ll*2+1][l*2+1] = Ke[l*2+1][ll*2+1]; 1210c4762a1bSJed Brown } 1211c4762a1bSJed Brown } 1212c4762a1bSJed Brown #endif 12135f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetValuesBlockedStencil(B,8,rc,8,rc,&Ke[0][0],ADD_VALUES)); 1214c4762a1bSJed Brown } 1215c4762a1bSJed Brown } 1216c4762a1bSJed Brown } 1217c4762a1bSJed Brown } 1218c4762a1bSJed Brown } 12195f80ce2aSJacob Faibussowitsch CHKERRQ(THIDARestorePrm(info->da,&prm)); 1220c4762a1bSJed Brown 12215f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 12225f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 12235f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetOption(B,MAT_SYMMETRIC,PETSC_TRUE)); 12245f80ce2aSJacob Faibussowitsch if (thi->verbose) CHKERRQ(THIMatrixStatistics(thi,B,PETSC_VIEWER_STDOUT_WORLD)); 1225c4762a1bSJed Brown PetscFunctionReturn(0); 1226c4762a1bSJed Brown } 1227c4762a1bSJed Brown 1228c4762a1bSJed Brown static PetscErrorCode THIJacobianLocal_3D_Full(DMDALocalInfo *info,Node ***x,Mat A,Mat B,THI thi) 1229c4762a1bSJed Brown { 1230c4762a1bSJed Brown PetscFunctionBeginUser; 12315f80ce2aSJacob Faibussowitsch CHKERRQ(THIJacobianLocal_3D(info,x,B,thi,THIASSEMBLY_FULL)); 1232c4762a1bSJed Brown PetscFunctionReturn(0); 1233c4762a1bSJed Brown } 1234c4762a1bSJed Brown 1235c4762a1bSJed Brown static PetscErrorCode THIJacobianLocal_3D_Tridiagonal(DMDALocalInfo *info,Node ***x,Mat A,Mat B,THI thi) 1236c4762a1bSJed Brown { 1237c4762a1bSJed Brown PetscFunctionBeginUser; 12385f80ce2aSJacob Faibussowitsch CHKERRQ(THIJacobianLocal_3D(info,x,B,thi,THIASSEMBLY_TRIDIAGONAL)); 1239c4762a1bSJed Brown PetscFunctionReturn(0); 1240c4762a1bSJed Brown } 1241c4762a1bSJed Brown 1242c4762a1bSJed Brown static PetscErrorCode DMRefineHierarchy_THI(DM dac0,PetscInt nlevels,DM hierarchy[]) 1243c4762a1bSJed Brown { 1244c4762a1bSJed Brown THI thi; 1245c4762a1bSJed Brown PetscInt dim,M,N,m,n,s,dof; 1246c4762a1bSJed Brown DM dac,daf; 1247c4762a1bSJed Brown DMDAStencilType st; 1248c4762a1bSJed Brown DM_DA *ddf,*ddc; 1249c4762a1bSJed Brown 1250c4762a1bSJed Brown PetscFunctionBeginUser; 12515f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectQuery((PetscObject)dac0,"THI",(PetscObject*)&thi)); 1252*28b400f6SJacob Faibussowitsch PetscCheck(thi,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Cannot refine this DMDA, missing composed THI instance"); 1253c4762a1bSJed Brown if (nlevels > 1) { 12545f80ce2aSJacob Faibussowitsch CHKERRQ(DMRefineHierarchy(dac0,nlevels-1,hierarchy)); 1255c4762a1bSJed Brown dac = hierarchy[nlevels-2]; 1256c4762a1bSJed Brown } else { 1257c4762a1bSJed Brown dac = dac0; 1258c4762a1bSJed Brown } 12595f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAGetInfo(dac,&dim, &N,&M,0, &n,&m,0, &dof,&s,0,0,0,&st)); 12602c71b3e2SJacob Faibussowitsch PetscCheckFalse(dim != 2,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"This function can only refine 2D DMDAs"); 1261c4762a1bSJed Brown 1262c4762a1bSJed Brown /* Creates a 3D DMDA with the same map-plane layout as the 2D one, with contiguous columns */ 12635f80ce2aSJacob Faibussowitsch CHKERRQ(DMDACreate3d(PetscObjectComm((PetscObject)dac),DM_BOUNDARY_NONE,DM_BOUNDARY_PERIODIC,DM_BOUNDARY_PERIODIC,st,thi->zlevels,N,M,1,n,m,dof,s,NULL,NULL,NULL,&daf)); 12645f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetUp(daf)); 1265c4762a1bSJed Brown 1266c4762a1bSJed Brown daf->ops->creatematrix = dac->ops->creatematrix; 1267c4762a1bSJed Brown daf->ops->createinterpolation = dac->ops->createinterpolation; 1268c4762a1bSJed Brown daf->ops->getcoloring = dac->ops->getcoloring; 1269c4762a1bSJed Brown ddf = (DM_DA*)daf->data; 1270c4762a1bSJed Brown ddc = (DM_DA*)dac->data; 1271c4762a1bSJed Brown ddf->interptype = ddc->interptype; 1272c4762a1bSJed Brown 12735f80ce2aSJacob Faibussowitsch CHKERRQ(DMDASetFieldName(daf,0,"x-velocity")); 12745f80ce2aSJacob Faibussowitsch CHKERRQ(DMDASetFieldName(daf,1,"y-velocity")); 1275c4762a1bSJed Brown 1276c4762a1bSJed Brown hierarchy[nlevels-1] = daf; 1277c4762a1bSJed Brown PetscFunctionReturn(0); 1278c4762a1bSJed Brown } 1279c4762a1bSJed Brown 1280c4762a1bSJed Brown static PetscErrorCode DMCreateInterpolation_DA_THI(DM dac,DM daf,Mat *A,Vec *scale) 1281c4762a1bSJed Brown { 1282c4762a1bSJed Brown PetscInt dim; 1283c4762a1bSJed Brown 1284c4762a1bSJed Brown PetscFunctionBeginUser; 1285c4762a1bSJed Brown PetscValidHeaderSpecific(dac,DM_CLASSID,1); 1286c4762a1bSJed Brown PetscValidHeaderSpecific(daf,DM_CLASSID,2); 1287c4762a1bSJed Brown PetscValidPointer(A,3); 1288c4762a1bSJed Brown if (scale) PetscValidPointer(scale,4); 12895f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAGetInfo(daf,&dim,0,0,0,0,0,0,0,0,0,0,0,0)); 1290c4762a1bSJed Brown if (dim == 2) { 1291c4762a1bSJed Brown /* We are in the 2D problem and use normal DMDA interpolation */ 12925f80ce2aSJacob Faibussowitsch CHKERRQ(DMCreateInterpolation(dac,daf,A,scale)); 1293c4762a1bSJed Brown } else { 1294c4762a1bSJed Brown PetscInt i,j,k,xs,ys,zs,xm,ym,zm,mx,my,mz,rstart,cstart; 1295c4762a1bSJed Brown Mat B; 1296c4762a1bSJed Brown 12975f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAGetInfo(daf,0, &mz,&my,&mx, 0,0,0, 0,0,0,0,0,0)); 12985f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAGetCorners(daf,&zs,&ys,&xs,&zm,&ym,&xm)); 1299*28b400f6SJacob Faibussowitsch PetscCheck(!zs,PETSC_COMM_SELF,PETSC_ERR_PLIB,"unexpected"); 13005f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreate(PetscObjectComm((PetscObject)daf),&B)); 13015f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetSizes(B,xm*ym*zm,xm*ym,mx*my*mz,mx*my)); 1302c4762a1bSJed Brown 13035f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetType(B,MATAIJ)); 13045f80ce2aSJacob Faibussowitsch CHKERRQ(MatSeqAIJSetPreallocation(B,1,NULL)); 13055f80ce2aSJacob Faibussowitsch CHKERRQ(MatMPIAIJSetPreallocation(B,1,NULL,0,NULL)); 13065f80ce2aSJacob Faibussowitsch CHKERRQ(MatGetOwnershipRange(B,&rstart,NULL)); 13075f80ce2aSJacob Faibussowitsch CHKERRQ(MatGetOwnershipRangeColumn(B,&cstart,NULL)); 1308c4762a1bSJed Brown for (i=xs; i<xs+xm; i++) { 1309c4762a1bSJed Brown for (j=ys; j<ys+ym; j++) { 1310c4762a1bSJed Brown for (k=zs; k<zs+zm; k++) { 1311c4762a1bSJed Brown PetscInt i2 = i*ym+j,i3 = i2*zm+k; 1312c4762a1bSJed Brown PetscScalar val = ((k == 0 || k == mz-1) ? 0.5 : 1.) / (mz-1.); /* Integration using trapezoid rule */ 13135f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetValue(B,cstart+i3,rstart+i2,val,INSERT_VALUES)); 1314c4762a1bSJed Brown } 1315c4762a1bSJed Brown } 1316c4762a1bSJed Brown } 13175f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 13185f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 13195f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreateMAIJ(B,sizeof(Node)/sizeof(PetscScalar),A)); 13205f80ce2aSJacob Faibussowitsch CHKERRQ(MatDestroy(&B)); 1321c4762a1bSJed Brown } 1322c4762a1bSJed Brown PetscFunctionReturn(0); 1323c4762a1bSJed Brown } 1324c4762a1bSJed Brown 1325c4762a1bSJed Brown static PetscErrorCode DMCreateMatrix_THI_Tridiagonal(DM da,Mat *J) 1326c4762a1bSJed Brown { 1327c4762a1bSJed Brown Mat A; 1328c4762a1bSJed Brown PetscInt xm,ym,zm,dim,dof = 2,starts[3],dims[3]; 1329c4762a1bSJed Brown ISLocalToGlobalMapping ltog; 1330c4762a1bSJed Brown 1331c4762a1bSJed Brown PetscFunctionBeginUser; 13325f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAGetInfo(da,&dim, 0,0,0, 0,0,0, 0,0,0,0,0,0)); 13332c71b3e2SJacob Faibussowitsch PetscCheckFalse(dim != 3,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Expected DMDA to be 3D"); 13345f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAGetCorners(da,0,0,0,&zm,&ym,&xm)); 13355f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetLocalToGlobalMapping(da,<og)); 13365f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreate(PetscObjectComm((PetscObject)da),&A)); 13375f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetSizes(A,dof*xm*ym*zm,dof*xm*ym*zm,PETSC_DETERMINE,PETSC_DETERMINE)); 13385f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetType(A,da->mattype)); 13395f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetFromOptions(A)); 13405f80ce2aSJacob Faibussowitsch CHKERRQ(MatSeqAIJSetPreallocation(A,3*2,NULL)); 13415f80ce2aSJacob Faibussowitsch CHKERRQ(MatMPIAIJSetPreallocation(A,3*2,NULL,0,NULL)); 13425f80ce2aSJacob Faibussowitsch CHKERRQ(MatSeqBAIJSetPreallocation(A,2,3,NULL)); 13435f80ce2aSJacob Faibussowitsch CHKERRQ(MatMPIBAIJSetPreallocation(A,2,3,NULL,0,NULL)); 13445f80ce2aSJacob Faibussowitsch CHKERRQ(MatSeqSBAIJSetPreallocation(A,2,2,NULL)); 13455f80ce2aSJacob Faibussowitsch CHKERRQ(MatMPISBAIJSetPreallocation(A,2,2,NULL,0,NULL)); 13465f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetLocalToGlobalMapping(A,ltog,ltog)); 13475f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAGetGhostCorners(da,&starts[0],&starts[1],&starts[2],&dims[0],&dims[1],&dims[2])); 13485f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetStencil(A,dim,dims,starts,dof)); 1349c4762a1bSJed Brown *J = A; 1350c4762a1bSJed Brown PetscFunctionReturn(0); 1351c4762a1bSJed Brown } 1352c4762a1bSJed Brown 1353c4762a1bSJed Brown static PetscErrorCode THIDAVecView_VTK_XML(THI thi,DM da,Vec X,const char filename[]) 1354c4762a1bSJed Brown { 1355c4762a1bSJed Brown const PetscInt dof = 2; 1356c4762a1bSJed Brown Units units = thi->units; 1357c4762a1bSJed Brown MPI_Comm comm; 1358c4762a1bSJed Brown PetscViewer viewer; 1359c4762a1bSJed Brown PetscMPIInt rank,size,tag,nn,nmax; 1360c4762a1bSJed Brown PetscInt mx,my,mz,r,range[6]; 1361c4762a1bSJed Brown const PetscScalar *x; 1362c4762a1bSJed Brown 1363c4762a1bSJed Brown PetscFunctionBeginUser; 13645f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectGetComm((PetscObject)thi,&comm)); 13655f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAGetInfo(da,0, &mz,&my,&mx, 0,0,0, 0,0,0,0,0,0)); 13665f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Comm_size(comm,&size)); 13675f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Comm_rank(comm,&rank)); 13685f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIOpen(comm,filename,&viewer)); 13695f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer,"<VTKFile type=\"StructuredGrid\" version=\"0.1\" byte_order=\"LittleEndian\">\n")); 13705f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," <StructuredGrid WholeExtent=\"%d %D %d %D %d %D\">\n",0,mz-1,0,my-1,0,mx-1)); 1371c4762a1bSJed Brown 13725f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAGetCorners(da,range,range+1,range+2,range+3,range+4,range+5)); 13735f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMPIIntCast(range[3]*range[4]*range[5]*dof,&nn)); 13745f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Reduce(&nn,&nmax,1,MPI_INT,MPI_MAX,0,comm)); 1375c4762a1bSJed Brown tag = ((PetscObject) viewer)->tag; 13765f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayRead(X,&x)); 1377dd400576SPatrick Sanan if (rank == 0) { 1378c4762a1bSJed Brown PetscScalar *array; 13795f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc1(nmax,&array)); 1380c4762a1bSJed Brown for (r=0; r<size; r++) { 1381c4762a1bSJed Brown PetscInt i,j,k,xs,xm,ys,ym,zs,zm; 1382c4762a1bSJed Brown const PetscScalar *ptr; 1383c4762a1bSJed Brown MPI_Status status; 1384c4762a1bSJed Brown if (r) { 13855f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Recv(range,6,MPIU_INT,r,tag,comm,MPI_STATUS_IGNORE)); 1386c4762a1bSJed Brown } 1387c4762a1bSJed Brown zs = range[0];ys = range[1];xs = range[2];zm = range[3];ym = range[4];xm = range[5]; 13882c71b3e2SJacob Faibussowitsch PetscCheckFalse(xm*ym*zm*dof > nmax,PETSC_COMM_SELF,PETSC_ERR_PLIB,"should not happen"); 1389c4762a1bSJed Brown if (r) { 13905f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Recv(array,nmax,MPIU_SCALAR,r,tag,comm,&status)); 13915f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Get_count(&status,MPIU_SCALAR,&nn)); 13922c71b3e2SJacob Faibussowitsch PetscCheckFalse(nn != xm*ym*zm*dof,PETSC_COMM_SELF,PETSC_ERR_PLIB,"should not happen"); 1393c4762a1bSJed Brown ptr = array; 1394c4762a1bSJed Brown } else ptr = x; 13955f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," <Piece Extent=\"%D %D %D %D %D %D\">\n",zs,zs+zm-1,ys,ys+ym-1,xs,xs+xm-1)); 1396c4762a1bSJed Brown 13975f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," <Points>\n")); 13985f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," <DataArray type=\"Float32\" NumberOfComponents=\"3\" format=\"ascii\">\n")); 1399c4762a1bSJed Brown for (i=xs; i<xs+xm; i++) { 1400c4762a1bSJed Brown for (j=ys; j<ys+ym; j++) { 1401c4762a1bSJed Brown for (k=zs; k<zs+zm; k++) { 1402c4762a1bSJed Brown PrmNode p; 1403c4762a1bSJed Brown PetscReal xx = thi->Lx*i/mx,yy = thi->Ly*j/my,zz; 1404c4762a1bSJed Brown thi->initialize(thi,xx,yy,&p); 1405c4762a1bSJed Brown zz = PetscRealPart(p.b) + PetscRealPart(p.h)*k/(mz-1); 14065f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer,"%f %f %f\n",(double)xx,(double)yy,(double)zz)); 1407c4762a1bSJed Brown } 1408c4762a1bSJed Brown } 1409c4762a1bSJed Brown } 14105f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," </DataArray>\n")); 14115f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," </Points>\n")); 1412c4762a1bSJed Brown 14135f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," <PointData>\n")); 14145f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," <DataArray type=\"Float32\" Name=\"velocity\" NumberOfComponents=\"3\" format=\"ascii\">\n")); 1415c4762a1bSJed Brown for (i=0; i<nn; i+=dof) { 14165f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer,"%f %f %f\n",(double)(PetscRealPart(ptr[i])*units->year/units->meter),(double)(PetscRealPart(ptr[i+1])*units->year/units->meter),0.0)); 1417c4762a1bSJed Brown } 14185f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," </DataArray>\n")); 1419c4762a1bSJed Brown 14205f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," <DataArray type=\"Int32\" Name=\"rank\" NumberOfComponents=\"1\" format=\"ascii\">\n")); 1421c4762a1bSJed Brown for (i=0; i<nn; i+=dof) { 14225f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer,"%D\n",r)); 1423c4762a1bSJed Brown } 14245f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," </DataArray>\n")); 14255f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," </PointData>\n")); 1426c4762a1bSJed Brown 14275f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," </Piece>\n")); 1428c4762a1bSJed Brown } 14295f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree(array)); 1430c4762a1bSJed Brown } else { 14315f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Send(range,6,MPIU_INT,0,tag,comm)); 14325f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Send((PetscScalar*)x,nn,MPIU_SCALAR,0,tag,comm)); 1433c4762a1bSJed Brown } 14345f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayRead(X,&x)); 14355f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer," </StructuredGrid>\n")); 14365f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPrintf(viewer,"</VTKFile>\n")); 14375f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerDestroy(&viewer)); 1438c4762a1bSJed Brown PetscFunctionReturn(0); 1439c4762a1bSJed Brown } 1440c4762a1bSJed Brown 1441c4762a1bSJed Brown int main(int argc,char *argv[]) 1442c4762a1bSJed Brown { 1443c4762a1bSJed Brown MPI_Comm comm; 1444c4762a1bSJed Brown THI thi; 1445c4762a1bSJed Brown PetscErrorCode ierr; 1446c4762a1bSJed Brown DM da; 1447c4762a1bSJed Brown SNES snes; 1448c4762a1bSJed Brown 1449c4762a1bSJed Brown ierr = PetscInitialize(&argc,&argv,0,help);if (ierr) return ierr; 1450c4762a1bSJed Brown comm = PETSC_COMM_WORLD; 1451c4762a1bSJed Brown 14525f80ce2aSJacob Faibussowitsch CHKERRQ(THICreate(comm,&thi)); 1453c4762a1bSJed Brown { 1454c4762a1bSJed Brown PetscInt M = 3,N = 3,P = 2; 1455c4762a1bSJed Brown ierr = PetscOptionsBegin(comm,NULL,"Grid resolution options","");CHKERRQ(ierr); 1456c4762a1bSJed Brown { 14575f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsInt("-M","Number of elements in x-direction on coarse level","",M,&M,NULL)); 1458c4762a1bSJed Brown N = M; 14595f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsInt("-N","Number of elements in y-direction on coarse level (if different from M)","",N,&N,NULL)); 1460c4762a1bSJed Brown if (thi->coarse2d) { 14615f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsInt("-zlevels","Number of elements in z-direction on fine level","",thi->zlevels,&thi->zlevels,NULL)); 1462c4762a1bSJed Brown } else { 14635f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsInt("-P","Number of elements in z-direction on coarse level","",P,&P,NULL)); 1464c4762a1bSJed Brown } 1465c4762a1bSJed Brown } 1466c4762a1bSJed Brown ierr = PetscOptionsEnd();CHKERRQ(ierr); 1467c4762a1bSJed Brown if (thi->coarse2d) { 14685f80ce2aSJacob Faibussowitsch CHKERRQ(DMDACreate2d(comm,DM_BOUNDARY_PERIODIC,DM_BOUNDARY_PERIODIC,DMDA_STENCIL_BOX,N,M,PETSC_DETERMINE,PETSC_DETERMINE,sizeof(Node)/sizeof(PetscScalar),1,0,0,&da)); 14695f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetFromOptions(da)); 14705f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetUp(da)); 1471c4762a1bSJed Brown da->ops->refinehierarchy = DMRefineHierarchy_THI; 1472c4762a1bSJed Brown da->ops->createinterpolation = DMCreateInterpolation_DA_THI; 1473c4762a1bSJed Brown 14745f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectCompose((PetscObject)da,"THI",(PetscObject)thi)); 1475c4762a1bSJed Brown } else { 14765f80ce2aSJacob Faibussowitsch CHKERRQ(DMDACreate3d(comm,DM_BOUNDARY_NONE,DM_BOUNDARY_PERIODIC,DM_BOUNDARY_PERIODIC, DMDA_STENCIL_BOX,P,N,M,1,PETSC_DETERMINE,PETSC_DETERMINE,sizeof(Node)/sizeof(PetscScalar),1,0,0,0,&da)); 14775f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetFromOptions(da)); 14785f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetUp(da)); 1479c4762a1bSJed Brown } 14805f80ce2aSJacob Faibussowitsch CHKERRQ(DMDASetFieldName(da,0,"x-velocity")); 14815f80ce2aSJacob Faibussowitsch CHKERRQ(DMDASetFieldName(da,1,"y-velocity")); 1482c4762a1bSJed Brown } 14835f80ce2aSJacob Faibussowitsch CHKERRQ(THISetUpDM(thi,da)); 1484c4762a1bSJed Brown if (thi->tridiagonal) da->ops->creatematrix = DMCreateMatrix_THI_Tridiagonal; 1485c4762a1bSJed Brown 1486c4762a1bSJed Brown { /* Set the fine level matrix type if -da_refine */ 1487c4762a1bSJed Brown PetscInt rlevel,clevel; 14885f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetRefineLevel(da,&rlevel)); 14895f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetCoarsenLevel(da,&clevel)); 14905f80ce2aSJacob Faibussowitsch if (rlevel - clevel > 0) CHKERRQ(DMSetMatType(da,thi->mattype)); 1491c4762a1bSJed Brown } 1492c4762a1bSJed Brown 14935f80ce2aSJacob Faibussowitsch CHKERRQ(DMDASNESSetFunctionLocal(da,ADD_VALUES,(DMDASNESFunction)THIFunctionLocal,thi)); 1494c4762a1bSJed Brown if (thi->tridiagonal) { 14955f80ce2aSJacob Faibussowitsch CHKERRQ(DMDASNESSetJacobianLocal(da,(DMDASNESJacobian)THIJacobianLocal_3D_Tridiagonal,thi)); 1496c4762a1bSJed Brown } else { 14975f80ce2aSJacob Faibussowitsch CHKERRQ(DMDASNESSetJacobianLocal(da,(DMDASNESJacobian)THIJacobianLocal_3D_Full,thi)); 1498c4762a1bSJed Brown } 14995f80ce2aSJacob Faibussowitsch CHKERRQ(DMCoarsenHookAdd(da,DMCoarsenHook_THI,NULL,thi)); 15005f80ce2aSJacob Faibussowitsch CHKERRQ(DMRefineHookAdd(da,DMRefineHook_THI,NULL,thi)); 1501c4762a1bSJed Brown 15025f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetApplicationContext(da,thi)); 1503c4762a1bSJed Brown 15045f80ce2aSJacob Faibussowitsch CHKERRQ(SNESCreate(comm,&snes)); 15055f80ce2aSJacob Faibussowitsch CHKERRQ(SNESSetDM(snes,da)); 15065f80ce2aSJacob Faibussowitsch CHKERRQ(DMDestroy(&da)); 15075f80ce2aSJacob Faibussowitsch CHKERRQ(SNESSetComputeInitialGuess(snes,THIInitial,NULL)); 15085f80ce2aSJacob Faibussowitsch CHKERRQ(SNESSetFromOptions(snes)); 1509c4762a1bSJed Brown 15105f80ce2aSJacob Faibussowitsch CHKERRQ(SNESSolve(snes,NULL,NULL)); 1511c4762a1bSJed Brown 15125f80ce2aSJacob Faibussowitsch CHKERRQ(THISolveStatistics(thi,snes,0,"Full")); 1513c4762a1bSJed Brown 1514c4762a1bSJed Brown { 1515c4762a1bSJed Brown PetscBool flg; 1516c4762a1bSJed Brown char filename[PETSC_MAX_PATH_LEN] = ""; 15175f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsGetString(NULL,NULL,"-o",filename,sizeof(filename),&flg)); 1518c4762a1bSJed Brown if (flg) { 1519c4762a1bSJed Brown Vec X; 1520c4762a1bSJed Brown DM dm; 15215f80ce2aSJacob Faibussowitsch CHKERRQ(SNESGetSolution(snes,&X)); 15225f80ce2aSJacob Faibussowitsch CHKERRQ(SNESGetDM(snes,&dm)); 15235f80ce2aSJacob Faibussowitsch CHKERRQ(THIDAVecView_VTK_XML(thi,dm,X,filename)); 1524c4762a1bSJed Brown } 1525c4762a1bSJed Brown } 1526c4762a1bSJed Brown 15275f80ce2aSJacob Faibussowitsch CHKERRQ(DMDestroy(&da)); 15285f80ce2aSJacob Faibussowitsch CHKERRQ(SNESDestroy(&snes)); 15295f80ce2aSJacob Faibussowitsch CHKERRQ(THIDestroy(&thi)); 1530c4762a1bSJed Brown ierr = PetscFinalize(); 1531c4762a1bSJed Brown return ierr; 1532c4762a1bSJed Brown } 1533c4762a1bSJed Brown 1534c4762a1bSJed Brown /*TEST 1535c4762a1bSJed Brown 1536c4762a1bSJed Brown build: 1537f56ea12dSJed Brown requires: !single 1538c4762a1bSJed Brown 1539c4762a1bSJed Brown test: 1540c4762a1bSJed Brown args: -M 6 -P 4 -da_refine 1 -snes_monitor_short -snes_converged_reason -ksp_monitor_short -ksp_converged_reason -thi_mat_type sbaij -ksp_type fgmres -pc_type mg -pc_mg_type full -mg_levels_ksp_type gmres -mg_levels_ksp_max_it 1 -mg_levels_pc_type icc 1541c4762a1bSJed Brown 1542c4762a1bSJed Brown test: 1543c4762a1bSJed Brown suffix: 2 1544c4762a1bSJed Brown nsize: 2 1545c4762a1bSJed Brown args: -M 6 -P 4 -thi_hom z -snes_monitor_short -snes_converged_reason -ksp_monitor_short -ksp_converged_reason -thi_mat_type sbaij -ksp_type fgmres -pc_type mg -pc_mg_type full -mg_levels_ksp_type gmres -mg_levels_ksp_max_it 1 -mg_levels_pc_type asm -mg_levels_pc_asm_blocks 6 -mg_levels_0_pc_type redundant -snes_grid_sequence 1 -mat_partitioning_type current -ksp_atol -1 1546c4762a1bSJed Brown 1547c4762a1bSJed Brown test: 1548c4762a1bSJed Brown suffix: 3 1549c4762a1bSJed Brown nsize: 3 1550c4762a1bSJed Brown args: -M 7 -P 4 -thi_hom z -da_refine 1 -snes_monitor_short -snes_converged_reason -ksp_monitor_short -ksp_converged_reason -thi_mat_type baij -ksp_type fgmres -pc_type mg -pc_mg_type full -mg_levels_pc_asm_type restrict -mg_levels_pc_type asm -mg_levels_pc_asm_blocks 9 -mg_levels_ksp_type gmres -mg_levels_ksp_max_it 1 -mat_partitioning_type current 1551c4762a1bSJed Brown 1552c4762a1bSJed Brown test: 1553c4762a1bSJed Brown suffix: 4 1554c4762a1bSJed Brown nsize: 6 1555c4762a1bSJed Brown args: -M 4 -P 2 -da_refine_hierarchy_x 1,1,3 -da_refine_hierarchy_y 2,2,1 -da_refine_hierarchy_z 2,2,1 -snes_grid_sequence 3 -ksp_converged_reason -ksp_type fgmres -ksp_rtol 1e-2 -pc_type mg -mg_levels_ksp_type gmres -mg_levels_ksp_max_it 1 -mg_levels_pc_type bjacobi -mg_levels_1_sub_pc_type cholesky -pc_mg_type multiplicative -snes_converged_reason -snes_stol 1e-12 -thi_L 80e3 -thi_alpha 0.05 -thi_friction_m 1 -thi_hom x -snes_view -mg_levels_0_pc_type redundant -mg_levels_0_ksp_type preonly -ksp_atol -1 1556c4762a1bSJed Brown 1557c4762a1bSJed Brown test: 1558c4762a1bSJed Brown suffix: 5 1559c4762a1bSJed Brown nsize: 6 1560c4762a1bSJed Brown args: -M 12 -P 5 -snes_monitor_short -ksp_converged_reason -pc_type asm -pc_asm_type restrict -dm_mat_type {{aij baij sbaij}} 1561c4762a1bSJed Brown 1562c4762a1bSJed Brown TEST*/ 1563