xref: /petsc/src/snes/tutorials/ex48.c (revision 48a46eb9bd028bec07ec0f396b1a3abb43f14558)
1c4762a1bSJed Brown static const char help[] = "Toy hydrostatic ice flow with multigrid in 3D.\n\
2c4762a1bSJed Brown \n\
3c4762a1bSJed Brown Solves the hydrostatic (aka Blatter/Pattyn/First Order) equations for ice sheet flow\n\
4c4762a1bSJed Brown using multigrid.  The ice uses a power-law rheology with \"Glen\" exponent 3 (corresponds\n\
5c4762a1bSJed Brown to p=4/3 in a p-Laplacian).  The focus is on ISMIP-HOM experiments which assume periodic\n\
6c4762a1bSJed Brown boundary conditions in the x- and y-directions.\n\
7c4762a1bSJed Brown \n\
8c4762a1bSJed Brown Equations are rescaled so that the domain size and solution are O(1), details of this scaling\n\
9c4762a1bSJed Brown can be controlled by the options -units_meter, -units_second, and -units_kilogram.\n\
10c4762a1bSJed Brown \n\
11c4762a1bSJed Brown A VTK StructuredGrid output file can be written using the option -o filename.vts\n\
12c4762a1bSJed Brown \n\n";
13c4762a1bSJed Brown 
14c4762a1bSJed Brown /*
15c4762a1bSJed Brown The equations for horizontal velocity (u,v) are
16c4762a1bSJed Brown 
17c4762a1bSJed Brown   - [eta (4 u_x + 2 v_y)]_x - [eta (u_y + v_x)]_y - [eta u_z]_z + rho g s_x = 0
18c4762a1bSJed Brown   - [eta (4 v_y + 2 u_x)]_y - [eta (u_y + v_x)]_x - [eta v_z]_z + rho g s_y = 0
19c4762a1bSJed Brown 
20c4762a1bSJed Brown where
21c4762a1bSJed Brown 
22c4762a1bSJed Brown   eta = B/2 (epsilon + gamma)^((p-2)/2)
23c4762a1bSJed Brown 
24c4762a1bSJed Brown is the nonlinear effective viscosity with regularization epsilon and hardness parameter B,
25c4762a1bSJed Brown written in terms of the second invariant
26c4762a1bSJed Brown 
27c4762a1bSJed Brown   gamma = u_x^2 + v_y^2 + u_x v_y + (1/4) (u_y + v_x)^2 + (1/4) u_z^2 + (1/4) v_z^2
28c4762a1bSJed Brown 
29c4762a1bSJed Brown The surface boundary conditions are the natural conditions.  The basal boundary conditions
30c4762a1bSJed Brown are either no-slip, or Navier (linear) slip with spatially variant friction coefficient beta^2.
31c4762a1bSJed Brown 
32c4762a1bSJed Brown In the code, the equations for (u,v) are multiplied through by 1/(rho g) so that residuals are O(1).
33c4762a1bSJed Brown 
34c4762a1bSJed Brown The discretization is Q1 finite elements, managed by a DMDA.  The grid is never distorted in the
35c4762a1bSJed Brown map (x,y) plane, but the bed and surface may be bumpy.  This is handled as usual in FEM, through
36c4762a1bSJed Brown the Jacobian of the coordinate transformation from a reference element to the physical element.
37c4762a1bSJed Brown 
38c4762a1bSJed Brown Since ice-flow is tightly coupled in the z-direction (within columns), the DMDA is managed
39c4762a1bSJed Brown specially so that columns are never distributed, and are always contiguous in memory.
40c4762a1bSJed Brown This amounts to reversing the meaning of X,Y,Z compared to the DMDA's internal interpretation,
41c4762a1bSJed Brown and then indexing as vec[i][j][k].  The exotic coarse spaces require 2D DMDAs which are made to
42c4762a1bSJed Brown use compatible domain decomposition relative to the 3D DMDAs.
43c4762a1bSJed Brown 
44c4762a1bSJed Brown There are two compile-time options:
45c4762a1bSJed Brown 
46c4762a1bSJed Brown   NO_SSE2:
47c4762a1bSJed Brown     If the host supports SSE2, we use integration code that has been vectorized with SSE2
48c4762a1bSJed Brown     intrinsics, unless this macro is defined.  The intrinsics speed up integration by about
49c4762a1bSJed Brown     30% on my architecture (P8700, gcc-4.5 snapshot).
50c4762a1bSJed Brown 
51c4762a1bSJed Brown   COMPUTE_LOWER_TRIANGULAR:
52c4762a1bSJed Brown     The element matrices we assemble are lower-triangular so it is not necessary to compute
53c4762a1bSJed Brown     all entries explicitly.  If this macro is defined, the lower-triangular entries are
54c4762a1bSJed Brown     computed explicitly.
55c4762a1bSJed Brown 
56c4762a1bSJed Brown */
57c4762a1bSJed Brown 
58c4762a1bSJed Brown #if defined(PETSC_APPLE_FRAMEWORK)
59c4762a1bSJed Brown #import <PETSc/petscsnes.h>
60c4762a1bSJed Brown #import <PETSc/petsc/private/dmdaimpl.h> /* There is not yet a public interface to manipulate dm->ops */
61c4762a1bSJed Brown #else
62c4762a1bSJed Brown 
63c4762a1bSJed Brown #include <petscsnes.h>
64c4762a1bSJed Brown #include <petsc/private/dmdaimpl.h> /* There is not yet a public interface to manipulate dm->ops */
65c4762a1bSJed Brown #endif
66c4762a1bSJed Brown #include <ctype.h> /* toupper() */
67c4762a1bSJed Brown 
68c4762a1bSJed Brown #if defined(__cplusplus) || defined(PETSC_HAVE_WINDOWS_COMPILERS) || defined(__PGI)
69c4762a1bSJed Brown /*  c++ cannot handle  [_restrict_] notation like C does */
70c4762a1bSJed Brown #undef PETSC_RESTRICT
71c4762a1bSJed Brown #define PETSC_RESTRICT
72c4762a1bSJed Brown #endif
73c4762a1bSJed Brown 
74c4762a1bSJed Brown #if defined __SSE2__
75c4762a1bSJed Brown #include <emmintrin.h>
76c4762a1bSJed Brown #endif
77c4762a1bSJed Brown 
78c4762a1bSJed Brown /* The SSE2 kernels are only for PetscScalar=double on architectures that support it */
799371c9d4SSatish Balay #if !defined NO_SSE2 && !defined PETSC_USE_COMPLEX && !defined PETSC_USE_REAL_SINGLE && !defined PETSC_USE_REAL___FLOAT128 && !defined PETSC_USE_REAL___FP16 && defined __SSE2__
80c4762a1bSJed Brown #define USE_SSE2_KERNELS 1
81c4762a1bSJed Brown #else
82c4762a1bSJed Brown #define USE_SSE2_KERNELS 0
83c4762a1bSJed Brown #endif
84c4762a1bSJed Brown 
85c4762a1bSJed Brown static PetscClassId THI_CLASSID;
86c4762a1bSJed Brown 
879371c9d4SSatish Balay typedef enum {
889371c9d4SSatish Balay   QUAD_GAUSS,
899371c9d4SSatish Balay   QUAD_LOBATTO
909371c9d4SSatish Balay } QuadratureType;
91c4762a1bSJed Brown static const char                  *QuadratureTypes[] = {"gauss", "lobatto", "QuadratureType", "QUAD_", 0};
92c4762a1bSJed Brown PETSC_UNUSED static const PetscReal HexQWeights[8]    = {1, 1, 1, 1, 1, 1, 1, 1};
93c4762a1bSJed Brown PETSC_UNUSED static const PetscReal HexQNodes[]       = {-0.57735026918962573, 0.57735026918962573};
94c4762a1bSJed Brown #define G 0.57735026918962573
95c4762a1bSJed Brown #define H (0.5 * (1. + G))
96c4762a1bSJed Brown #define L (0.5 * (1. - G))
97c4762a1bSJed Brown #define M (-0.5)
98c4762a1bSJed Brown #define P (0.5)
99c4762a1bSJed Brown /* Special quadrature: Lobatto in horizontal, Gauss in vertical */
1009371c9d4SSatish Balay static const PetscReal HexQInterp_Lobatto[8][8] = {
1019371c9d4SSatish Balay   {H, 0, 0, 0, L, 0, 0, 0},
102c4762a1bSJed Brown   {0, H, 0, 0, 0, L, 0, 0},
103c4762a1bSJed Brown   {0, 0, H, 0, 0, 0, L, 0},
104c4762a1bSJed Brown   {0, 0, 0, H, 0, 0, 0, L},
105c4762a1bSJed Brown   {L, 0, 0, 0, H, 0, 0, 0},
106c4762a1bSJed Brown   {0, L, 0, 0, 0, H, 0, 0},
107c4762a1bSJed Brown   {0, 0, L, 0, 0, 0, H, 0},
1089371c9d4SSatish Balay   {0, 0, 0, L, 0, 0, 0, H}
1099371c9d4SSatish Balay };
110c4762a1bSJed Brown static const PetscReal HexQDeriv_Lobatto[8][8][3] = {
111c4762a1bSJed Brown   {{M * H, M *H, M}, {P * H, 0, 0},    {0, 0, 0},        {0, P *H, 0},     {M * L, M *L, P}, {P * L, 0, 0},    {0, 0, 0},        {0, P *L, 0}    },
112c4762a1bSJed Brown   {{M * H, 0, 0},    {P * H, M *H, M}, {0, P *H, 0},     {0, 0, 0},        {M * L, 0, 0},    {P * L, M *L, P}, {0, P *L, 0},     {0, 0, 0}       },
113c4762a1bSJed Brown   {{0, 0, 0},        {0, M *H, 0},     {P * H, P *H, M}, {M * H, 0, 0},    {0, 0, 0},        {0, M *L, 0},     {P * L, P *L, P}, {M * L, 0, 0}   },
114c4762a1bSJed Brown   {{0, M *H, 0},     {0, 0, 0},        {P * H, 0, 0},    {M * H, P *H, M}, {0, M *L, 0},     {0, 0, 0},        {P * L, 0, 0},    {M * L, P *L, P}},
115c4762a1bSJed Brown   {{M * L, M *L, M}, {P * L, 0, 0},    {0, 0, 0},        {0, P *L, 0},     {M * H, M *H, P}, {P * H, 0, 0},    {0, 0, 0},        {0, P *H, 0}    },
116c4762a1bSJed Brown   {{M * L, 0, 0},    {P * L, M *L, M}, {0, P *L, 0},     {0, 0, 0},        {M * H, 0, 0},    {P * H, M *H, P}, {0, P *H, 0},     {0, 0, 0}       },
117c4762a1bSJed Brown   {{0, 0, 0},        {0, M *L, 0},     {P * L, P *L, M}, {M * L, 0, 0},    {0, 0, 0},        {0, M *H, 0},     {P * H, P *H, P}, {M * H, 0, 0}   },
1189371c9d4SSatish Balay   {{0, M *L, 0},     {0, 0, 0},        {P * L, 0, 0},    {M * L, P *L, M}, {0, M *H, 0},     {0, 0, 0},        {P * H, 0, 0},    {M * H, P *H, P}}
1199371c9d4SSatish Balay };
120c4762a1bSJed Brown /* Stanndard Gauss */
1219371c9d4SSatish Balay static const PetscReal HexQInterp_Gauss[8][8] = {
1229371c9d4SSatish Balay   {H * H * H, L *H *H, L *L *H, H *L *H, H *H *L, L *H *L, L *L *L, H *L *L},
123c4762a1bSJed Brown   {L * H * H, H *H *H, H *L *H, L *L *H, L *H *L, H *H *L, H *L *L, L *L *L},
124c4762a1bSJed Brown   {L * L * H, H *L *H, H *H *H, L *H *H, L *L *L, H *L *L, H *H *L, L *H *L},
125c4762a1bSJed Brown   {H * L * H, L *L *H, L *H *H, H *H *H, H *L *L, L *L *L, L *H *L, H *H *L},
126c4762a1bSJed Brown   {H * H * L, L *H *L, L *L *L, H *L *L, H *H *H, L *H *H, L *L *H, H *L *H},
127c4762a1bSJed Brown   {L * H * L, H *H *L, H *L *L, L *L *L, L *H *H, H *H *H, H *L *H, L *L *H},
128c4762a1bSJed Brown   {L * L * L, H *L *L, H *H *L, L *H *L, L *L *H, H *L *H, H *H *H, L *H *H},
1299371c9d4SSatish Balay   {H * L * L, L *L *L, L *H *L, H *H *L, H *L *H, L *L *H, L *H *H, H *H *H}
1309371c9d4SSatish Balay };
131c4762a1bSJed Brown static const PetscReal HexQDeriv_Gauss[8][8][3] = {
132c4762a1bSJed Brown   {{M * H * H, H *M *H, H *H *M}, {P * H * H, L *M *H, L *H *M}, {P * L * H, L *P *H, L *L *M}, {M * L * H, H *P *H, H *L *M}, {M * H * L, H *M *L, H *H *P}, {P * H * L, L *M *L, L *H *P}, {P * L * L, L *P *L, L *L *P}, {M * L * L, H *P *L, H *L *P}},
133c4762a1bSJed Brown   {{M * H * H, L *M *H, L *H *M}, {P * H * H, H *M *H, H *H *M}, {P * L * H, H *P *H, H *L *M}, {M * L * H, L *P *H, L *L *M}, {M * H * L, L *M *L, L *H *P}, {P * H * L, H *M *L, H *H *P}, {P * L * L, H *P *L, H *L *P}, {M * L * L, L *P *L, L *L *P}},
134c4762a1bSJed Brown   {{M * L * H, L *M *H, L *L *M}, {P * L * H, H *M *H, H *L *M}, {P * H * H, H *P *H, H *H *M}, {M * H * H, L *P *H, L *H *M}, {M * L * L, L *M *L, L *L *P}, {P * L * L, H *M *L, H *L *P}, {P * H * L, H *P *L, H *H *P}, {M * H * L, L *P *L, L *H *P}},
135c4762a1bSJed Brown   {{M * L * H, H *M *H, H *L *M}, {P * L * H, L *M *H, L *L *M}, {P * H * H, L *P *H, L *H *M}, {M * H * H, H *P *H, H *H *M}, {M * L * L, H *M *L, H *L *P}, {P * L * L, L *M *L, L *L *P}, {P * H * L, L *P *L, L *H *P}, {M * H * L, H *P *L, H *H *P}},
136c4762a1bSJed Brown   {{M * H * L, H *M *L, H *H *M}, {P * H * L, L *M *L, L *H *M}, {P * L * L, L *P *L, L *L *M}, {M * L * L, H *P *L, H *L *M}, {M * H * H, H *M *H, H *H *P}, {P * H * H, L *M *H, L *H *P}, {P * L * H, L *P *H, L *L *P}, {M * L * H, H *P *H, H *L *P}},
137c4762a1bSJed Brown   {{M * H * L, L *M *L, L *H *M}, {P * H * L, H *M *L, H *H *M}, {P * L * L, H *P *L, H *L *M}, {M * L * L, L *P *L, L *L *M}, {M * H * H, L *M *H, L *H *P}, {P * H * H, H *M *H, H *H *P}, {P * L * H, H *P *H, H *L *P}, {M * L * H, L *P *H, L *L *P}},
138c4762a1bSJed Brown   {{M * L * L, L *M *L, L *L *M}, {P * L * L, H *M *L, H *L *M}, {P * H * L, H *P *L, H *H *M}, {M * H * L, L *P *L, L *H *M}, {M * L * H, L *M *H, L *L *P}, {P * L * H, H *M *H, H *L *P}, {P * H * H, H *P *H, H *H *P}, {M * H * H, L *P *H, L *H *P}},
1399371c9d4SSatish Balay   {{M * L * L, H *M *L, H *L *M}, {P * L * L, L *M *L, L *L *M}, {P * H * L, L *P *L, L *H *M}, {M * H * L, H *P *L, H *H *M}, {M * L * H, H *M *H, H *L *P}, {P * L * H, L *M *H, L *L *P}, {P * H * H, L *P *H, L *H *P}, {M * H * H, H *P *H, H *H *P}}
1409371c9d4SSatish Balay };
141c4762a1bSJed Brown static const PetscReal (*HexQInterp)[8], (*HexQDeriv)[8][3];
142c4762a1bSJed Brown /* Standard 2x2 Gauss quadrature for the bottom layer. */
1439371c9d4SSatish Balay static const PetscReal QuadQInterp[4][4] = {
1449371c9d4SSatish Balay   {H * H, L *H, L *L, H *L},
145c4762a1bSJed Brown   {L * H, H *H, H *L, L *L},
146c4762a1bSJed Brown   {L * L, H *L, H *H, L *H},
1479371c9d4SSatish Balay   {H * L, L *L, L *H, H *H}
1489371c9d4SSatish Balay };
149c4762a1bSJed Brown static const PetscReal QuadQDeriv[4][4][2] = {
150c4762a1bSJed Brown   {{M * H, M *H}, {P * H, M *L}, {P * L, P *L}, {M * L, P *H}},
151c4762a1bSJed Brown   {{M * H, M *L}, {P * H, M *H}, {P * L, P *H}, {M * L, P *L}},
152c4762a1bSJed Brown   {{M * L, M *L}, {P * L, M *H}, {P * H, P *H}, {M * H, P *L}},
1539371c9d4SSatish Balay   {{M * L, M *H}, {P * L, M *L}, {P * H, P *L}, {M * H, P *H}}
1549371c9d4SSatish Balay };
155c4762a1bSJed Brown #undef G
156c4762a1bSJed Brown #undef H
157c4762a1bSJed Brown #undef L
158c4762a1bSJed Brown #undef M
159c4762a1bSJed Brown #undef P
160c4762a1bSJed Brown 
1619371c9d4SSatish Balay #define HexExtract(x, i, j, k, n) \
1629371c9d4SSatish Balay   do { \
163c4762a1bSJed Brown     (n)[0] = (x)[i][j][k]; \
164c4762a1bSJed Brown     (n)[1] = (x)[i + 1][j][k]; \
165c4762a1bSJed Brown     (n)[2] = (x)[i + 1][j + 1][k]; \
166c4762a1bSJed Brown     (n)[3] = (x)[i][j + 1][k]; \
167c4762a1bSJed Brown     (n)[4] = (x)[i][j][k + 1]; \
168c4762a1bSJed Brown     (n)[5] = (x)[i + 1][j][k + 1]; \
169c4762a1bSJed Brown     (n)[6] = (x)[i + 1][j + 1][k + 1]; \
170c4762a1bSJed Brown     (n)[7] = (x)[i][j + 1][k + 1]; \
171c4762a1bSJed Brown   } while (0)
172c4762a1bSJed Brown 
1739371c9d4SSatish Balay #define HexExtractRef(x, i, j, k, n) \
1749371c9d4SSatish Balay   do { \
175c4762a1bSJed Brown     (n)[0] = &(x)[i][j][k]; \
176c4762a1bSJed Brown     (n)[1] = &(x)[i + 1][j][k]; \
177c4762a1bSJed Brown     (n)[2] = &(x)[i + 1][j + 1][k]; \
178c4762a1bSJed Brown     (n)[3] = &(x)[i][j + 1][k]; \
179c4762a1bSJed Brown     (n)[4] = &(x)[i][j][k + 1]; \
180c4762a1bSJed Brown     (n)[5] = &(x)[i + 1][j][k + 1]; \
181c4762a1bSJed Brown     (n)[6] = &(x)[i + 1][j + 1][k + 1]; \
182c4762a1bSJed Brown     (n)[7] = &(x)[i][j + 1][k + 1]; \
183c4762a1bSJed Brown   } while (0)
184c4762a1bSJed Brown 
1859371c9d4SSatish Balay #define QuadExtract(x, i, j, n) \
1869371c9d4SSatish Balay   do { \
187c4762a1bSJed Brown     (n)[0] = (x)[i][j]; \
188c4762a1bSJed Brown     (n)[1] = (x)[i + 1][j]; \
189c4762a1bSJed Brown     (n)[2] = (x)[i + 1][j + 1]; \
190c4762a1bSJed Brown     (n)[3] = (x)[i][j + 1]; \
191c4762a1bSJed Brown   } while (0)
192c4762a1bSJed Brown 
1939371c9d4SSatish Balay static void HexGrad(const PetscReal dphi[][3], const PetscReal zn[], PetscReal dz[]) {
194c4762a1bSJed Brown   PetscInt i;
195c4762a1bSJed Brown   dz[0] = dz[1] = dz[2] = 0;
196c4762a1bSJed Brown   for (i = 0; i < 8; i++) {
197c4762a1bSJed Brown     dz[0] += dphi[i][0] * zn[i];
198c4762a1bSJed Brown     dz[1] += dphi[i][1] * zn[i];
199c4762a1bSJed Brown     dz[2] += dphi[i][2] * zn[i];
200c4762a1bSJed Brown   }
201c4762a1bSJed Brown }
202c4762a1bSJed Brown 
2039371c9d4SSatish Balay static void HexComputeGeometry(PetscInt q, PetscReal hx, PetscReal hy, const PetscReal dz[PETSC_RESTRICT], PetscReal phi[PETSC_RESTRICT], PetscReal dphi[PETSC_RESTRICT][3], PetscReal *PETSC_RESTRICT jw) {
2049371c9d4SSatish Balay   const PetscReal jac[3][3] = {
2059371c9d4SSatish Balay     {hx / 2, 0,      0    },
2069371c9d4SSatish Balay     {0,      hy / 2, 0    },
2079371c9d4SSatish Balay     {dz[0],  dz[1],  dz[2]}
2089371c9d4SSatish Balay   };
2099371c9d4SSatish Balay   const PetscReal ijac[3][3] = {
2109371c9d4SSatish Balay     {1 / jac[0][0],                        0,                                    0            },
2119371c9d4SSatish Balay     {0,                                    1 / jac[1][1],                        0            },
2129371c9d4SSatish Balay     {-jac[2][0] / (jac[0][0] * jac[2][2]), -jac[2][1] / (jac[1][1] * jac[2][2]), 1 / jac[2][2]}
2139371c9d4SSatish Balay   };
214c4762a1bSJed Brown   const PetscReal jdet = jac[0][0] * jac[1][1] * jac[2][2];
215c4762a1bSJed Brown   PetscInt        i;
216c4762a1bSJed Brown 
217c4762a1bSJed Brown   for (i = 0; i < 8; i++) {
218c4762a1bSJed Brown     const PetscReal *dphir = HexQDeriv[q][i];
219c4762a1bSJed Brown     phi[i]                 = HexQInterp[q][i];
220c4762a1bSJed Brown     dphi[i][0]             = dphir[0] * ijac[0][0] + dphir[1] * ijac[1][0] + dphir[2] * ijac[2][0];
221c4762a1bSJed Brown     dphi[i][1]             = dphir[0] * ijac[0][1] + dphir[1] * ijac[1][1] + dphir[2] * ijac[2][1];
222c4762a1bSJed Brown     dphi[i][2]             = dphir[0] * ijac[0][2] + dphir[1] * ijac[1][2] + dphir[2] * ijac[2][2];
223c4762a1bSJed Brown   }
224c4762a1bSJed Brown   *jw = 1.0 * jdet;
225c4762a1bSJed Brown }
226c4762a1bSJed Brown 
227c4762a1bSJed Brown typedef struct _p_THI   *THI;
228c4762a1bSJed Brown typedef struct _n_Units *Units;
229c4762a1bSJed Brown 
230c4762a1bSJed Brown typedef struct {
231c4762a1bSJed Brown   PetscScalar u, v;
232c4762a1bSJed Brown } Node;
233c4762a1bSJed Brown 
234c4762a1bSJed Brown typedef struct {
235c4762a1bSJed Brown   PetscScalar b;     /* bed */
236c4762a1bSJed Brown   PetscScalar h;     /* thickness */
237c4762a1bSJed Brown   PetscScalar beta2; /* friction */
238c4762a1bSJed Brown } PrmNode;
239c4762a1bSJed Brown 
240c4762a1bSJed Brown typedef struct {
241c4762a1bSJed Brown   PetscReal min, max, cmin, cmax;
242c4762a1bSJed Brown } PRange;
243c4762a1bSJed Brown 
2449371c9d4SSatish Balay typedef enum {
2459371c9d4SSatish Balay   THIASSEMBLY_TRIDIAGONAL,
2469371c9d4SSatish Balay   THIASSEMBLY_FULL
2479371c9d4SSatish Balay } THIAssemblyMode;
248c4762a1bSJed Brown 
249c4762a1bSJed Brown struct _p_THI {
250c4762a1bSJed Brown   PETSCHEADER(int);
251c4762a1bSJed Brown   void (*initialize)(THI, PetscReal x, PetscReal y, PrmNode *p);
252c4762a1bSJed Brown   PetscInt  zlevels;
253c4762a1bSJed Brown   PetscReal Lx, Ly, Lz; /* Model domain */
254c4762a1bSJed Brown   PetscReal alpha;      /* Bed angle */
255c4762a1bSJed Brown   Units     units;
256c4762a1bSJed Brown   PetscReal dirichlet_scale;
257c4762a1bSJed Brown   PetscReal ssa_friction_scale;
258c4762a1bSJed Brown   PRange    eta;
259c4762a1bSJed Brown   PRange    beta2;
260c4762a1bSJed Brown   struct {
261c4762a1bSJed Brown     PetscReal Bd2, eps, exponent;
262c4762a1bSJed Brown   } viscosity;
263c4762a1bSJed Brown   struct {
264c4762a1bSJed Brown     PetscReal irefgam, eps2, exponent, refvel, epsvel;
265c4762a1bSJed Brown   } friction;
266c4762a1bSJed Brown   PetscReal rhog;
267c4762a1bSJed Brown   PetscBool no_slip;
268c4762a1bSJed Brown   PetscBool tridiagonal;
269c4762a1bSJed Brown   PetscBool coarse2d;
270c4762a1bSJed Brown   PetscBool verbose;
271c4762a1bSJed Brown   MatType   mattype;
272c4762a1bSJed Brown };
273c4762a1bSJed Brown 
274c4762a1bSJed Brown struct _n_Units {
275c4762a1bSJed Brown   /* fundamental */
276c4762a1bSJed Brown   PetscReal meter;
277c4762a1bSJed Brown   PetscReal kilogram;
278c4762a1bSJed Brown   PetscReal second;
279c4762a1bSJed Brown   /* derived */
280c4762a1bSJed Brown   PetscReal Pascal;
281c4762a1bSJed Brown   PetscReal year;
282c4762a1bSJed Brown };
283c4762a1bSJed Brown 
284c4762a1bSJed Brown static PetscErrorCode THIJacobianLocal_3D_Full(DMDALocalInfo *, Node ***, Mat, Mat, THI);
285c4762a1bSJed Brown static PetscErrorCode THIJacobianLocal_3D_Tridiagonal(DMDALocalInfo *, Node ***, Mat, Mat, THI);
286c4762a1bSJed Brown static PetscErrorCode THIJacobianLocal_2D(DMDALocalInfo *, Node **, Mat, Mat, THI);
287c4762a1bSJed Brown 
2889371c9d4SSatish Balay static void PrmHexGetZ(const PrmNode pn[], PetscInt k, PetscInt zm, PetscReal zn[]) {
2899371c9d4SSatish Balay   const PetscScalar zm1 = zm - 1, znl[8] = {pn[0].b + pn[0].h * (PetscScalar)k / zm1,       pn[1].b + pn[1].h * (PetscScalar)k / zm1,       pn[2].b + pn[2].h * (PetscScalar)k / zm1,       pn[3].b + pn[3].h * (PetscScalar)k / zm1,
2909371c9d4SSatish Balay                                             pn[0].b + pn[0].h * (PetscScalar)(k + 1) / zm1, pn[1].b + pn[1].h * (PetscScalar)(k + 1) / zm1, pn[2].b + pn[2].h * (PetscScalar)(k + 1) / zm1, pn[3].b + pn[3].h * (PetscScalar)(k + 1) / zm1};
291c4762a1bSJed Brown   PetscInt          i;
292c4762a1bSJed Brown   for (i = 0; i < 8; i++) zn[i] = PetscRealPart(znl[i]);
293c4762a1bSJed Brown }
294c4762a1bSJed Brown 
295c4762a1bSJed Brown /* Tests A and C are from the ISMIP-HOM paper (Pattyn et al. 2008) */
2969371c9d4SSatish Balay static void THIInitialize_HOM_A(THI thi, PetscReal x, PetscReal y, PrmNode *p) {
297c4762a1bSJed Brown   Units     units = thi->units;
298c4762a1bSJed Brown   PetscReal s     = -x * PetscSinReal(thi->alpha);
299c4762a1bSJed Brown 
300c4762a1bSJed Brown   p->b     = s - 1000 * units->meter + 500 * units->meter * PetscSinReal(x * 2 * PETSC_PI / thi->Lx) * PetscSinReal(y * 2 * PETSC_PI / thi->Ly);
301c4762a1bSJed Brown   p->h     = s - p->b;
302c4762a1bSJed Brown   p->beta2 = 1e30;
303c4762a1bSJed Brown }
304c4762a1bSJed Brown 
3059371c9d4SSatish Balay static void THIInitialize_HOM_C(THI thi, PetscReal x, PetscReal y, PrmNode *p) {
306c4762a1bSJed Brown   Units     units = thi->units;
307c4762a1bSJed Brown   PetscReal s     = -x * PetscSinReal(thi->alpha);
308c4762a1bSJed Brown 
309c4762a1bSJed Brown   p->b     = s - 1000 * units->meter;
310c4762a1bSJed Brown   p->h     = s - p->b;
311c4762a1bSJed Brown   /* tau_b = beta2 v   is a stress (Pa) */
312c4762a1bSJed Brown   p->beta2 = 1000 * (1 + PetscSinReal(x * 2 * PETSC_PI / thi->Lx) * PetscSinReal(y * 2 * PETSC_PI / thi->Ly)) * units->Pascal * units->year / units->meter;
313c4762a1bSJed Brown }
314c4762a1bSJed Brown 
315c4762a1bSJed Brown /* These are just toys */
316c4762a1bSJed Brown 
317c4762a1bSJed Brown /* Same bed as test A, free slip everywhere except for a discontinuous jump to a circular sticky region in the middle. */
3189371c9d4SSatish Balay static void THIInitialize_HOM_X(THI thi, PetscReal xx, PetscReal yy, PrmNode *p) {
319c4762a1bSJed Brown   Units     units = thi->units;
320c4762a1bSJed Brown   PetscReal x = xx * 2 * PETSC_PI / thi->Lx - PETSC_PI, y = yy * 2 * PETSC_PI / thi->Ly - PETSC_PI; /* [-pi,pi] */
321c4762a1bSJed Brown   PetscReal r = PetscSqrtReal(x * x + y * y), s = -x * PetscSinReal(thi->alpha);
322c4762a1bSJed Brown   p->b     = s - 1000 * units->meter + 500 * units->meter * PetscSinReal(x + PETSC_PI) * PetscSinReal(y + PETSC_PI);
323c4762a1bSJed Brown   p->h     = s - p->b;
324c4762a1bSJed Brown   p->beta2 = 1000 * (r < 1 ? 2 : 0) * units->Pascal * units->year / units->meter;
325c4762a1bSJed Brown }
326c4762a1bSJed Brown 
327c4762a1bSJed Brown /* Like Z, but with 200 meter cliffs */
3289371c9d4SSatish Balay static void THIInitialize_HOM_Y(THI thi, PetscReal xx, PetscReal yy, PrmNode *p) {
329c4762a1bSJed Brown   Units     units = thi->units;
330c4762a1bSJed Brown   PetscReal x = xx * 2 * PETSC_PI / thi->Lx - PETSC_PI, y = yy * 2 * PETSC_PI / thi->Ly - PETSC_PI; /* [-pi,pi] */
331c4762a1bSJed Brown   PetscReal r = PetscSqrtReal(x * x + y * y), s = -x * PetscSinReal(thi->alpha);
332c4762a1bSJed Brown 
333c4762a1bSJed Brown   p->b = s - 1000 * units->meter + 500 * units->meter * PetscSinReal(x + PETSC_PI) * PetscSinReal(y + PETSC_PI);
334c4762a1bSJed Brown   if (PetscRealPart(p->b) > -700 * units->meter) p->b += 200 * units->meter;
335c4762a1bSJed Brown   p->h     = s - p->b;
336c4762a1bSJed Brown   p->beta2 = 1000 * (1. + PetscSinReal(PetscSqrtReal(16 * r)) / PetscSqrtReal(1e-2 + 16 * r) * PetscCosReal(x * 3 / 2) * PetscCosReal(y * 3 / 2)) * units->Pascal * units->year / units->meter;
337c4762a1bSJed Brown }
338c4762a1bSJed Brown 
339c4762a1bSJed Brown /* Same bed as A, smoothly varying slipperiness, similar to MATLAB's "sombrero" (uncorrelated with bathymetry) */
3409371c9d4SSatish Balay static void THIInitialize_HOM_Z(THI thi, PetscReal xx, PetscReal yy, PrmNode *p) {
341c4762a1bSJed Brown   Units     units = thi->units;
342c4762a1bSJed Brown   PetscReal x = xx * 2 * PETSC_PI / thi->Lx - PETSC_PI, y = yy * 2 * PETSC_PI / thi->Ly - PETSC_PI; /* [-pi,pi] */
343c4762a1bSJed Brown   PetscReal r = PetscSqrtReal(x * x + y * y), s = -x * PetscSinReal(thi->alpha);
344c4762a1bSJed Brown 
345c4762a1bSJed Brown   p->b     = s - 1000 * units->meter + 500 * units->meter * PetscSinReal(x + PETSC_PI) * PetscSinReal(y + PETSC_PI);
346c4762a1bSJed Brown   p->h     = s - p->b;
347c4762a1bSJed Brown   p->beta2 = 1000 * (1. + PetscSinReal(PetscSqrtReal(16 * r)) / PetscSqrtReal(1e-2 + 16 * r) * PetscCosReal(x * 3 / 2) * PetscCosReal(y * 3 / 2)) * units->Pascal * units->year / units->meter;
348c4762a1bSJed Brown }
349c4762a1bSJed Brown 
3509371c9d4SSatish Balay static void THIFriction(THI thi, PetscReal rbeta2, PetscReal gam, PetscReal *beta2, PetscReal *dbeta2) {
351c4762a1bSJed Brown   if (thi->friction.irefgam == 0) {
352c4762a1bSJed Brown     Units units           = thi->units;
353c4762a1bSJed Brown     thi->friction.irefgam = 1. / (0.5 * PetscSqr(thi->friction.refvel * units->meter / units->year));
354c4762a1bSJed Brown     thi->friction.eps2    = 0.5 * PetscSqr(thi->friction.epsvel * units->meter / units->year) * thi->friction.irefgam;
355c4762a1bSJed Brown   }
356c4762a1bSJed Brown   if (thi->friction.exponent == 0) {
357c4762a1bSJed Brown     *beta2  = rbeta2;
358c4762a1bSJed Brown     *dbeta2 = 0;
359c4762a1bSJed Brown   } else {
360c4762a1bSJed Brown     *beta2  = rbeta2 * PetscPowReal(thi->friction.eps2 + gam * thi->friction.irefgam, thi->friction.exponent);
361c4762a1bSJed Brown     *dbeta2 = thi->friction.exponent * *beta2 / (thi->friction.eps2 + gam * thi->friction.irefgam) * thi->friction.irefgam;
362c4762a1bSJed Brown   }
363c4762a1bSJed Brown }
364c4762a1bSJed Brown 
3659371c9d4SSatish Balay static void THIViscosity(THI thi, PetscReal gam, PetscReal *eta, PetscReal *deta) {
366c4762a1bSJed Brown   PetscReal Bd2, eps, exponent;
367c4762a1bSJed Brown   if (thi->viscosity.Bd2 == 0) {
368c4762a1bSJed Brown     Units           units   = thi->units;
3699371c9d4SSatish Balay     const PetscReal n       = 3.,                                                     /* Glen exponent */
370c4762a1bSJed Brown       p                     = 1. + 1. / n,                                            /* for Stokes */
371c4762a1bSJed Brown       A                     = 1.e-16 * PetscPowReal(units->Pascal, -n) / units->year, /* softness parameter (Pa^{-n}/s) */
372c4762a1bSJed Brown       B                     = PetscPowReal(A, -1. / n);                               /* hardness parameter */
373c4762a1bSJed Brown     thi->viscosity.Bd2      = B / 2;
374c4762a1bSJed Brown     thi->viscosity.exponent = (p - 2) / 2;
375c4762a1bSJed Brown     thi->viscosity.eps      = 0.5 * PetscSqr(1e-5 / units->year);
376c4762a1bSJed Brown   }
377c4762a1bSJed Brown   Bd2      = thi->viscosity.Bd2;
378c4762a1bSJed Brown   exponent = thi->viscosity.exponent;
379c4762a1bSJed Brown   eps      = thi->viscosity.eps;
380c4762a1bSJed Brown   *eta     = Bd2 * PetscPowReal(eps + gam, exponent);
381c4762a1bSJed Brown   *deta    = exponent * (*eta) / (eps + gam);
382c4762a1bSJed Brown }
383c4762a1bSJed Brown 
3849371c9d4SSatish Balay static void RangeUpdate(PetscReal *min, PetscReal *max, PetscReal x) {
385c4762a1bSJed Brown   if (x < *min) *min = x;
386c4762a1bSJed Brown   if (x > *max) *max = x;
387c4762a1bSJed Brown }
388c4762a1bSJed Brown 
3899371c9d4SSatish Balay static void PRangeClear(PRange *p) {
390c4762a1bSJed Brown   p->cmin = p->min = 1e100;
391c4762a1bSJed Brown   p->cmax = p->max = -1e100;
392c4762a1bSJed Brown }
393c4762a1bSJed Brown 
3949371c9d4SSatish Balay static PetscErrorCode PRangeMinMax(PRange *p, PetscReal min, PetscReal max) {
395c4762a1bSJed Brown   PetscFunctionBeginUser;
396c4762a1bSJed Brown   p->cmin = min;
397c4762a1bSJed Brown   p->cmax = max;
398c4762a1bSJed Brown   if (min < p->min) p->min = min;
399c4762a1bSJed Brown   if (max > p->max) p->max = max;
400c4762a1bSJed Brown   PetscFunctionReturn(0);
401c4762a1bSJed Brown }
402c4762a1bSJed Brown 
4039371c9d4SSatish Balay static PetscErrorCode THIDestroy(THI *thi) {
404c4762a1bSJed Brown   PetscFunctionBeginUser;
405c4762a1bSJed Brown   if (!*thi) PetscFunctionReturn(0);
4069371c9d4SSatish Balay   if (--((PetscObject)(*thi))->refct > 0) {
4079371c9d4SSatish Balay     *thi = 0;
4089371c9d4SSatish Balay     PetscFunctionReturn(0);
4099371c9d4SSatish Balay   }
4109566063dSJacob Faibussowitsch   PetscCall(PetscFree((*thi)->units));
4119566063dSJacob Faibussowitsch   PetscCall(PetscFree((*thi)->mattype));
4129566063dSJacob Faibussowitsch   PetscCall(PetscHeaderDestroy(thi));
413c4762a1bSJed Brown   PetscFunctionReturn(0);
414c4762a1bSJed Brown }
415c4762a1bSJed Brown 
4169371c9d4SSatish Balay static PetscErrorCode THICreate(MPI_Comm comm, THI *inthi) {
417c4762a1bSJed Brown   static PetscBool registered = PETSC_FALSE;
418c4762a1bSJed Brown   THI              thi;
419c4762a1bSJed Brown   Units            units;
420c4762a1bSJed Brown 
421c4762a1bSJed Brown   PetscFunctionBeginUser;
422c4762a1bSJed Brown   *inthi = 0;
423c4762a1bSJed Brown   if (!registered) {
4249566063dSJacob Faibussowitsch     PetscCall(PetscClassIdRegister("Toy Hydrostatic Ice", &THI_CLASSID));
425c4762a1bSJed Brown     registered = PETSC_TRUE;
426c4762a1bSJed Brown   }
4279566063dSJacob Faibussowitsch   PetscCall(PetscHeaderCreate(thi, THI_CLASSID, "THI", "Toy Hydrostatic Ice", "", comm, THIDestroy, 0));
428c4762a1bSJed Brown 
4299566063dSJacob Faibussowitsch   PetscCall(PetscNew(&thi->units));
430c4762a1bSJed Brown   units           = thi->units;
431c4762a1bSJed Brown   units->meter    = 1e-2;
432c4762a1bSJed Brown   units->second   = 1e-7;
433c4762a1bSJed Brown   units->kilogram = 1e-12;
434c4762a1bSJed Brown 
435d0609cedSBarry Smith   PetscOptionsBegin(comm, NULL, "Scaled units options", "");
436c4762a1bSJed Brown   {
4379566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-units_meter", "1 meter in scaled length units", "", units->meter, &units->meter, NULL));
4389566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-units_second", "1 second in scaled time units", "", units->second, &units->second, NULL));
4399566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-units_kilogram", "1 kilogram in scaled mass units", "", units->kilogram, &units->kilogram, NULL));
440c4762a1bSJed Brown   }
441d0609cedSBarry Smith   PetscOptionsEnd();
442c4762a1bSJed Brown   units->Pascal = units->kilogram / (units->meter * PetscSqr(units->second));
443c4762a1bSJed Brown   units->year   = 31556926. * units->second; /* seconds per year */
444c4762a1bSJed Brown 
445c4762a1bSJed Brown   thi->Lx              = 10.e3;
446c4762a1bSJed Brown   thi->Ly              = 10.e3;
447c4762a1bSJed Brown   thi->Lz              = 1000;
448c4762a1bSJed Brown   thi->dirichlet_scale = 1;
449c4762a1bSJed Brown   thi->verbose         = PETSC_FALSE;
450c4762a1bSJed Brown 
451d0609cedSBarry Smith   PetscOptionsBegin(comm, NULL, "Toy Hydrostatic Ice options", "");
452c4762a1bSJed Brown   {
453c4762a1bSJed Brown     QuadratureType quad       = QUAD_GAUSS;
454c4762a1bSJed Brown     char           homexp[]   = "A";
455c4762a1bSJed Brown     char           mtype[256] = MATSBAIJ;
456c4762a1bSJed Brown     PetscReal      L, m = 1.0;
457c4762a1bSJed Brown     PetscBool      flg;
458c4762a1bSJed Brown     L = thi->Lx;
4599566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-thi_L", "Domain size (m)", "", L, &L, &flg));
460c4762a1bSJed Brown     if (flg) thi->Lx = thi->Ly = L;
4619566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-thi_Lx", "X Domain size (m)", "", thi->Lx, &thi->Lx, NULL));
4629566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-thi_Ly", "Y Domain size (m)", "", thi->Ly, &thi->Ly, NULL));
4639566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-thi_Lz", "Z Domain size (m)", "", thi->Lz, &thi->Lz, NULL));
4649566063dSJacob Faibussowitsch     PetscCall(PetscOptionsString("-thi_hom", "ISMIP-HOM experiment (A or C)", "", homexp, homexp, sizeof(homexp), NULL));
465c4762a1bSJed Brown     switch (homexp[0] = toupper(homexp[0])) {
466c4762a1bSJed Brown     case 'A':
467c4762a1bSJed Brown       thi->initialize = THIInitialize_HOM_A;
468c4762a1bSJed Brown       thi->no_slip    = PETSC_TRUE;
469c4762a1bSJed Brown       thi->alpha      = 0.5;
470c4762a1bSJed Brown       break;
471c4762a1bSJed Brown     case 'C':
472c4762a1bSJed Brown       thi->initialize = THIInitialize_HOM_C;
473c4762a1bSJed Brown       thi->no_slip    = PETSC_FALSE;
474c4762a1bSJed Brown       thi->alpha      = 0.1;
475c4762a1bSJed Brown       break;
476c4762a1bSJed Brown     case 'X':
477c4762a1bSJed Brown       thi->initialize = THIInitialize_HOM_X;
478c4762a1bSJed Brown       thi->no_slip    = PETSC_FALSE;
479c4762a1bSJed Brown       thi->alpha      = 0.3;
480c4762a1bSJed Brown       break;
481c4762a1bSJed Brown     case 'Y':
482c4762a1bSJed Brown       thi->initialize = THIInitialize_HOM_Y;
483c4762a1bSJed Brown       thi->no_slip    = PETSC_FALSE;
484c4762a1bSJed Brown       thi->alpha      = 0.5;
485c4762a1bSJed Brown       break;
486c4762a1bSJed Brown     case 'Z':
487c4762a1bSJed Brown       thi->initialize = THIInitialize_HOM_Z;
488c4762a1bSJed Brown       thi->no_slip    = PETSC_FALSE;
489c4762a1bSJed Brown       thi->alpha      = 0.5;
490c4762a1bSJed Brown       break;
4919371c9d4SSatish Balay     default: SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "HOM experiment '%c' not implemented", homexp[0]);
492c4762a1bSJed Brown     }
4939566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEnum("-thi_quadrature", "Quadrature to use for 3D elements", "", QuadratureTypes, (PetscEnum)quad, (PetscEnum *)&quad, NULL));
494c4762a1bSJed Brown     switch (quad) {
495c4762a1bSJed Brown     case QUAD_GAUSS:
496c4762a1bSJed Brown       HexQInterp = HexQInterp_Gauss;
497c4762a1bSJed Brown       HexQDeriv  = HexQDeriv_Gauss;
498c4762a1bSJed Brown       break;
499c4762a1bSJed Brown     case QUAD_LOBATTO:
500c4762a1bSJed Brown       HexQInterp = HexQInterp_Lobatto;
501c4762a1bSJed Brown       HexQDeriv  = HexQDeriv_Lobatto;
502c4762a1bSJed Brown       break;
503c4762a1bSJed Brown     }
5049566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-thi_alpha", "Bed angle (degrees)", "", thi->alpha, &thi->alpha, NULL));
505c4762a1bSJed Brown 
506c4762a1bSJed Brown     thi->friction.refvel = 100.;
507c4762a1bSJed Brown     thi->friction.epsvel = 1.;
508c4762a1bSJed Brown 
5099566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-thi_friction_refvel", "Reference velocity for sliding", "", thi->friction.refvel, &thi->friction.refvel, NULL));
5109566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-thi_friction_epsvel", "Regularization velocity for sliding", "", thi->friction.epsvel, &thi->friction.epsvel, NULL));
5119566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-thi_friction_m", "Friction exponent, 0=Coulomb, 1=Navier", "", m, &m, NULL));
512c4762a1bSJed Brown 
513c4762a1bSJed Brown     thi->friction.exponent = (m - 1) / 2;
514c4762a1bSJed Brown 
5159566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-thi_dirichlet_scale", "Scale Dirichlet boundary conditions by this factor", "", thi->dirichlet_scale, &thi->dirichlet_scale, NULL));
5169566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-thi_ssa_friction_scale", "Scale slip boundary conditions by this factor in SSA (2D) assembly", "", thi->ssa_friction_scale, &thi->ssa_friction_scale, NULL));
5179566063dSJacob Faibussowitsch     PetscCall(PetscOptionsBool("-thi_coarse2d", "Use a 2D coarse space corresponding to SSA", "", thi->coarse2d, &thi->coarse2d, NULL));
5189566063dSJacob Faibussowitsch     PetscCall(PetscOptionsBool("-thi_tridiagonal", "Assemble a tridiagonal system (column coupling only) on the finest level", "", thi->tridiagonal, &thi->tridiagonal, NULL));
5199566063dSJacob Faibussowitsch     PetscCall(PetscOptionsFList("-thi_mat_type", "Matrix type", "MatSetType", MatList, mtype, (char *)mtype, sizeof(mtype), NULL));
5209566063dSJacob Faibussowitsch     PetscCall(PetscStrallocpy(mtype, (char **)&thi->mattype));
5219566063dSJacob Faibussowitsch     PetscCall(PetscOptionsBool("-thi_verbose", "Enable verbose output (like matrix sizes and statistics)", "", thi->verbose, &thi->verbose, NULL));
522c4762a1bSJed Brown   }
523d0609cedSBarry Smith   PetscOptionsEnd();
524c4762a1bSJed Brown 
525c4762a1bSJed Brown   /* dimensionalize */
526c4762a1bSJed Brown   thi->Lx *= units->meter;
527c4762a1bSJed Brown   thi->Ly *= units->meter;
528c4762a1bSJed Brown   thi->Lz *= units->meter;
529c4762a1bSJed Brown   thi->alpha *= PETSC_PI / 180;
530c4762a1bSJed Brown 
531c4762a1bSJed Brown   PRangeClear(&thi->eta);
532c4762a1bSJed Brown   PRangeClear(&thi->beta2);
533c4762a1bSJed Brown 
534c4762a1bSJed Brown   {
5359371c9d4SSatish Balay     PetscReal u = 1000 * units->meter / (3e7 * units->second), gradu = u / (100 * units->meter), eta, deta, rho = 910 * units->kilogram / PetscPowReal(units->meter, 3), grav = 9.81 * units->meter / PetscSqr(units->second),
536c4762a1bSJed Brown               driving = rho * grav * PetscSinReal(thi->alpha) * 1000 * units->meter;
537c4762a1bSJed Brown     THIViscosity(thi, 0.5 * gradu * gradu, &eta, &deta);
538c4762a1bSJed Brown     thi->rhog = rho * grav;
539c4762a1bSJed Brown     if (thi->verbose) {
5409566063dSJacob Faibussowitsch       PetscCall(PetscPrintf(PetscObjectComm((PetscObject)thi), "Units: meter %8.2g  second %8.2g  kg %8.2g  Pa %8.2g\n", (double)units->meter, (double)units->second, (double)units->kilogram, (double)units->Pascal));
5419566063dSJacob Faibussowitsch       PetscCall(PetscPrintf(PetscObjectComm((PetscObject)thi), "Domain (%6.2g,%6.2g,%6.2g), pressure %8.2g, driving stress %8.2g\n", (double)thi->Lx, (double)thi->Ly, (double)thi->Lz, (double)(rho * grav * 1e3 * units->meter), (double)driving));
5429566063dSJacob Faibussowitsch       PetscCall(PetscPrintf(PetscObjectComm((PetscObject)thi), "Large velocity 1km/a %8.2g, velocity gradient %8.2g, eta %8.2g, stress %8.2g, ratio %8.2g\n", (double)u, (double)gradu, (double)eta, (double)(2 * eta * gradu), (double)(2 * eta * gradu / driving)));
543c4762a1bSJed Brown       THIViscosity(thi, 0.5 * PetscSqr(1e-3 * gradu), &eta, &deta);
5449566063dSJacob Faibussowitsch       PetscCall(PetscPrintf(PetscObjectComm((PetscObject)thi), "Small velocity 1m/a  %8.2g, velocity gradient %8.2g, eta %8.2g, stress %8.2g, ratio %8.2g\n", (double)(1e-3 * u), (double)(1e-3 * gradu), (double)eta, (double)(2 * eta * 1e-3 * gradu), (double)(2 * eta * 1e-3 * gradu / driving)));
545c4762a1bSJed Brown     }
546c4762a1bSJed Brown   }
547c4762a1bSJed Brown 
548c4762a1bSJed Brown   *inthi = thi;
549c4762a1bSJed Brown   PetscFunctionReturn(0);
550c4762a1bSJed Brown }
551c4762a1bSJed Brown 
5529371c9d4SSatish Balay static PetscErrorCode THIInitializePrm(THI thi, DM da2prm, Vec prm) {
553c4762a1bSJed Brown   PrmNode **p;
554c4762a1bSJed Brown   PetscInt  i, j, xs, xm, ys, ym, mx, my;
555c4762a1bSJed Brown 
556c4762a1bSJed Brown   PetscFunctionBeginUser;
5579566063dSJacob Faibussowitsch   PetscCall(DMDAGetGhostCorners(da2prm, &ys, &xs, 0, &ym, &xm, 0));
5589566063dSJacob Faibussowitsch   PetscCall(DMDAGetInfo(da2prm, 0, &my, &mx, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0));
5599566063dSJacob Faibussowitsch   PetscCall(DMDAVecGetArray(da2prm, prm, &p));
560c4762a1bSJed Brown   for (i = xs; i < xs + xm; i++) {
561c4762a1bSJed Brown     for (j = ys; j < ys + ym; j++) {
562c4762a1bSJed Brown       PetscReal xx = thi->Lx * i / mx, yy = thi->Ly * j / my;
563c4762a1bSJed Brown       thi->initialize(thi, xx, yy, &p[i][j]);
564c4762a1bSJed Brown     }
565c4762a1bSJed Brown   }
5669566063dSJacob Faibussowitsch   PetscCall(DMDAVecRestoreArray(da2prm, prm, &p));
567c4762a1bSJed Brown   PetscFunctionReturn(0);
568c4762a1bSJed Brown }
569c4762a1bSJed Brown 
5709371c9d4SSatish Balay static PetscErrorCode THISetUpDM(THI thi, DM dm) {
571c4762a1bSJed Brown   PetscInt        refinelevel, coarsenlevel, level, dim, Mx, My, Mz, mx, my, s;
572c4762a1bSJed Brown   DMDAStencilType st;
573c4762a1bSJed Brown   DM              da2prm;
574c4762a1bSJed Brown   Vec             X;
575c4762a1bSJed Brown 
576c4762a1bSJed Brown   PetscFunctionBeginUser;
5779566063dSJacob Faibussowitsch   PetscCall(DMDAGetInfo(dm, &dim, &Mz, &My, &Mx, 0, &my, &mx, 0, &s, 0, 0, 0, &st));
578*48a46eb9SPierre Jolivet   if (dim == 2) PetscCall(DMDAGetInfo(dm, &dim, &My, &Mx, 0, &my, &mx, 0, 0, &s, 0, 0, 0, &st));
5799566063dSJacob Faibussowitsch   PetscCall(DMGetRefineLevel(dm, &refinelevel));
5809566063dSJacob Faibussowitsch   PetscCall(DMGetCoarsenLevel(dm, &coarsenlevel));
581c4762a1bSJed Brown   level = refinelevel - coarsenlevel;
5829566063dSJacob Faibussowitsch   PetscCall(DMDACreate2d(PetscObjectComm((PetscObject)thi), DM_BOUNDARY_PERIODIC, DM_BOUNDARY_PERIODIC, st, My, Mx, my, mx, sizeof(PrmNode) / sizeof(PetscScalar), s, 0, 0, &da2prm));
5839566063dSJacob Faibussowitsch   PetscCall(DMSetUp(da2prm));
5849566063dSJacob Faibussowitsch   PetscCall(DMCreateLocalVector(da2prm, &X));
585c4762a1bSJed Brown   {
586c4762a1bSJed Brown     PetscReal Lx = thi->Lx / thi->units->meter, Ly = thi->Ly / thi->units->meter, Lz = thi->Lz / thi->units->meter;
587c4762a1bSJed Brown     if (dim == 2) {
58863a3b9bcSJacob Faibussowitsch       PetscCall(PetscPrintf(PetscObjectComm((PetscObject)thi), "Level %" PetscInt_FMT " domain size (m) %8.2g x %8.2g, num elements %" PetscInt_FMT " x %" PetscInt_FMT " (%" PetscInt_FMT "), size (m) %g x %g\n", level, (double)Lx, (double)Ly, Mx, My, Mx * My, (double)(Lx / Mx), (double)(Ly / My)));
589c4762a1bSJed Brown     } else {
59063a3b9bcSJacob Faibussowitsch       PetscCall(PetscPrintf(PetscObjectComm((PetscObject)thi), "Level %" PetscInt_FMT " domain size (m) %8.2g x %8.2g x %8.2g, num elements %" PetscInt_FMT " x %" PetscInt_FMT " x %" PetscInt_FMT " (%" PetscInt_FMT "), size (m) %g x %g x %g\n", level, (double)Lx, (double)Ly, (double)Lz, Mx, My, Mz, Mx * My * Mz, (double)(Lx / Mx), (double)(Ly / My), (double)(1000. / (Mz - 1))));
591c4762a1bSJed Brown     }
592c4762a1bSJed Brown   }
5939566063dSJacob Faibussowitsch   PetscCall(THIInitializePrm(thi, da2prm, X));
594c4762a1bSJed Brown   if (thi->tridiagonal) { /* Reset coarse Jacobian evaluation */
5959566063dSJacob Faibussowitsch     PetscCall(DMDASNESSetJacobianLocal(dm, (DMDASNESJacobian)THIJacobianLocal_3D_Full, thi));
596c4762a1bSJed Brown   }
5971baa6e33SBarry Smith   if (thi->coarse2d) PetscCall(DMDASNESSetJacobianLocal(dm, (DMDASNESJacobian)THIJacobianLocal_2D, thi));
5989566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)dm, "DMDA2Prm", (PetscObject)da2prm));
5999566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)dm, "DMDA2Prm_Vec", (PetscObject)X));
6009566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&da2prm));
6019566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&X));
602c4762a1bSJed Brown   PetscFunctionReturn(0);
603c4762a1bSJed Brown }
604c4762a1bSJed Brown 
6059371c9d4SSatish Balay static PetscErrorCode DMCoarsenHook_THI(DM dmf, DM dmc, void *ctx) {
606c4762a1bSJed Brown   THI      thi = (THI)ctx;
607c4762a1bSJed Brown   PetscInt rlevel, clevel;
608c4762a1bSJed Brown 
609c4762a1bSJed Brown   PetscFunctionBeginUser;
6109566063dSJacob Faibussowitsch   PetscCall(THISetUpDM(thi, dmc));
6119566063dSJacob Faibussowitsch   PetscCall(DMGetRefineLevel(dmc, &rlevel));
6129566063dSJacob Faibussowitsch   PetscCall(DMGetCoarsenLevel(dmc, &clevel));
6139566063dSJacob Faibussowitsch   if (rlevel - clevel == 0) PetscCall(DMSetMatType(dmc, MATAIJ));
6149566063dSJacob Faibussowitsch   PetscCall(DMCoarsenHookAdd(dmc, DMCoarsenHook_THI, NULL, thi));
615c4762a1bSJed Brown   PetscFunctionReturn(0);
616c4762a1bSJed Brown }
617c4762a1bSJed Brown 
6189371c9d4SSatish Balay static PetscErrorCode DMRefineHook_THI(DM dmc, DM dmf, void *ctx) {
619c4762a1bSJed Brown   THI thi = (THI)ctx;
620c4762a1bSJed Brown 
621c4762a1bSJed Brown   PetscFunctionBeginUser;
6229566063dSJacob Faibussowitsch   PetscCall(THISetUpDM(thi, dmf));
6239566063dSJacob Faibussowitsch   PetscCall(DMSetMatType(dmf, thi->mattype));
6249566063dSJacob Faibussowitsch   PetscCall(DMRefineHookAdd(dmf, DMRefineHook_THI, NULL, thi));
625c4762a1bSJed Brown   /* With grid sequencing, a formerly-refined DM will later be coarsened by PCSetUp_MG */
6269566063dSJacob Faibussowitsch   PetscCall(DMCoarsenHookAdd(dmf, DMCoarsenHook_THI, NULL, thi));
627c4762a1bSJed Brown   PetscFunctionReturn(0);
628c4762a1bSJed Brown }
629c4762a1bSJed Brown 
6309371c9d4SSatish Balay static PetscErrorCode THIDAGetPrm(DM da, PrmNode ***prm) {
631c4762a1bSJed Brown   DM  da2prm;
632c4762a1bSJed Brown   Vec X;
633c4762a1bSJed Brown 
634c4762a1bSJed Brown   PetscFunctionBeginUser;
6359566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)da, "DMDA2Prm", (PetscObject *)&da2prm));
63628b400f6SJacob Faibussowitsch   PetscCheck(da2prm, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "No DMDA2Prm composed with given DMDA");
6379566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)da, "DMDA2Prm_Vec", (PetscObject *)&X));
63828b400f6SJacob Faibussowitsch   PetscCheck(X, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "No DMDA2Prm_Vec composed with given DMDA");
6399566063dSJacob Faibussowitsch   PetscCall(DMDAVecGetArray(da2prm, X, prm));
640c4762a1bSJed Brown   PetscFunctionReturn(0);
641c4762a1bSJed Brown }
642c4762a1bSJed Brown 
6439371c9d4SSatish Balay static PetscErrorCode THIDARestorePrm(DM da, PrmNode ***prm) {
644c4762a1bSJed Brown   DM  da2prm;
645c4762a1bSJed Brown   Vec X;
646c4762a1bSJed Brown 
647c4762a1bSJed Brown   PetscFunctionBeginUser;
6489566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)da, "DMDA2Prm", (PetscObject *)&da2prm));
64928b400f6SJacob Faibussowitsch   PetscCheck(da2prm, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "No DMDA2Prm composed with given DMDA");
6509566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)da, "DMDA2Prm_Vec", (PetscObject *)&X));
65128b400f6SJacob Faibussowitsch   PetscCheck(X, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "No DMDA2Prm_Vec composed with given DMDA");
6529566063dSJacob Faibussowitsch   PetscCall(DMDAVecRestoreArray(da2prm, X, prm));
653c4762a1bSJed Brown   PetscFunctionReturn(0);
654c4762a1bSJed Brown }
655c4762a1bSJed Brown 
6569371c9d4SSatish Balay static PetscErrorCode THIInitial(SNES snes, Vec X, void *ctx) {
657c4762a1bSJed Brown   THI       thi;
658c4762a1bSJed Brown   PetscInt  i, j, k, xs, xm, ys, ym, zs, zm, mx, my;
659c4762a1bSJed Brown   PetscReal hx, hy;
660c4762a1bSJed Brown   PrmNode **prm;
661c4762a1bSJed Brown   Node   ***x;
662c4762a1bSJed Brown   DM        da;
663c4762a1bSJed Brown 
664c4762a1bSJed Brown   PetscFunctionBeginUser;
6659566063dSJacob Faibussowitsch   PetscCall(SNESGetDM(snes, &da));
6669566063dSJacob Faibussowitsch   PetscCall(DMGetApplicationContext(da, &thi));
6679566063dSJacob Faibussowitsch   PetscCall(DMDAGetInfo(da, 0, 0, &my, &mx, 0, 0, 0, 0, 0, 0, 0, 0, 0));
6689566063dSJacob Faibussowitsch   PetscCall(DMDAGetCorners(da, &zs, &ys, &xs, &zm, &ym, &xm));
6699566063dSJacob Faibussowitsch   PetscCall(DMDAVecGetArray(da, X, &x));
6709566063dSJacob Faibussowitsch   PetscCall(THIDAGetPrm(da, &prm));
671c4762a1bSJed Brown   hx = thi->Lx / mx;
672c4762a1bSJed Brown   hy = thi->Ly / my;
673c4762a1bSJed Brown   for (i = xs; i < xs + xm; i++) {
674c4762a1bSJed Brown     for (j = ys; j < ys + ym; j++) {
675c4762a1bSJed Brown       for (k = zs; k < zs + zm; k++) {
6769371c9d4SSatish Balay         const PetscScalar zm1 = zm - 1, drivingx = thi->rhog * (prm[i + 1][j].b + prm[i + 1][j].h - prm[i - 1][j].b - prm[i - 1][j].h) / (2 * hx), drivingy = thi->rhog * (prm[i][j + 1].b + prm[i][j + 1].h - prm[i][j - 1].b - prm[i][j - 1].h) / (2 * hy);
677c4762a1bSJed Brown         x[i][j][k].u = 0. * drivingx * prm[i][j].h * (PetscScalar)k / zm1;
678c4762a1bSJed Brown         x[i][j][k].v = 0. * drivingy * prm[i][j].h * (PetscScalar)k / zm1;
679c4762a1bSJed Brown       }
680c4762a1bSJed Brown     }
681c4762a1bSJed Brown   }
6829566063dSJacob Faibussowitsch   PetscCall(DMDAVecRestoreArray(da, X, &x));
6839566063dSJacob Faibussowitsch   PetscCall(THIDARestorePrm(da, &prm));
684c4762a1bSJed Brown   PetscFunctionReturn(0);
685c4762a1bSJed Brown }
686c4762a1bSJed Brown 
6879371c9d4SSatish Balay static void PointwiseNonlinearity(THI thi, const Node n[PETSC_RESTRICT], const PetscReal phi[PETSC_RESTRICT], PetscReal dphi[PETSC_RESTRICT][3], PetscScalar *PETSC_RESTRICT u, PetscScalar *PETSC_RESTRICT v, PetscScalar du[PETSC_RESTRICT], PetscScalar dv[PETSC_RESTRICT], PetscReal *eta, PetscReal *deta) {
688c4762a1bSJed Brown   PetscInt    l, ll;
689c4762a1bSJed Brown   PetscScalar gam;
690c4762a1bSJed Brown 
691c4762a1bSJed Brown   du[0] = du[1] = du[2] = 0;
692c4762a1bSJed Brown   dv[0] = dv[1] = dv[2] = 0;
693c4762a1bSJed Brown   *u                    = 0;
694c4762a1bSJed Brown   *v                    = 0;
695c4762a1bSJed Brown   for (l = 0; l < 8; l++) {
696c4762a1bSJed Brown     *u += phi[l] * n[l].u;
697c4762a1bSJed Brown     *v += phi[l] * n[l].v;
698c4762a1bSJed Brown     for (ll = 0; ll < 3; ll++) {
699c4762a1bSJed Brown       du[ll] += dphi[l][ll] * n[l].u;
700c4762a1bSJed Brown       dv[ll] += dphi[l][ll] * n[l].v;
701c4762a1bSJed Brown     }
702c4762a1bSJed Brown   }
703c4762a1bSJed Brown   gam = PetscSqr(du[0]) + PetscSqr(dv[1]) + du[0] * dv[1] + 0.25 * PetscSqr(du[1] + dv[0]) + 0.25 * PetscSqr(du[2]) + 0.25 * PetscSqr(dv[2]);
704c4762a1bSJed Brown   THIViscosity(thi, PetscRealPart(gam), eta, deta);
705c4762a1bSJed Brown }
706c4762a1bSJed Brown 
7079371c9d4SSatish Balay static void PointwiseNonlinearity2D(THI thi, Node n[], PetscReal phi[], PetscReal dphi[4][2], PetscScalar *u, PetscScalar *v, PetscScalar du[], PetscScalar dv[], PetscReal *eta, PetscReal *deta) {
708c4762a1bSJed Brown   PetscInt    l, ll;
709c4762a1bSJed Brown   PetscScalar gam;
710c4762a1bSJed Brown 
711c4762a1bSJed Brown   du[0] = du[1] = 0;
712c4762a1bSJed Brown   dv[0] = dv[1] = 0;
713c4762a1bSJed Brown   *u            = 0;
714c4762a1bSJed Brown   *v            = 0;
715c4762a1bSJed Brown   for (l = 0; l < 4; l++) {
716c4762a1bSJed Brown     *u += phi[l] * n[l].u;
717c4762a1bSJed Brown     *v += phi[l] * n[l].v;
718c4762a1bSJed Brown     for (ll = 0; ll < 2; ll++) {
719c4762a1bSJed Brown       du[ll] += dphi[l][ll] * n[l].u;
720c4762a1bSJed Brown       dv[ll] += dphi[l][ll] * n[l].v;
721c4762a1bSJed Brown     }
722c4762a1bSJed Brown   }
723c4762a1bSJed Brown   gam = PetscSqr(du[0]) + PetscSqr(dv[1]) + du[0] * dv[1] + 0.25 * PetscSqr(du[1] + dv[0]);
724c4762a1bSJed Brown   THIViscosity(thi, PetscRealPart(gam), eta, deta);
725c4762a1bSJed Brown }
726c4762a1bSJed Brown 
7279371c9d4SSatish Balay static PetscErrorCode THIFunctionLocal(DMDALocalInfo *info, Node ***x, Node ***f, THI thi) {
728c4762a1bSJed Brown   PetscInt  xs, ys, xm, ym, zm, i, j, k, q, l;
729c4762a1bSJed Brown   PetscReal hx, hy, etamin, etamax, beta2min, beta2max;
730c4762a1bSJed Brown   PrmNode **prm;
731c4762a1bSJed Brown 
732c4762a1bSJed Brown   PetscFunctionBeginUser;
733c4762a1bSJed Brown   xs = info->zs;
734c4762a1bSJed Brown   ys = info->ys;
735c4762a1bSJed Brown   xm = info->zm;
736c4762a1bSJed Brown   ym = info->ym;
737c4762a1bSJed Brown   zm = info->xm;
738c4762a1bSJed Brown   hx = thi->Lx / info->mz;
739c4762a1bSJed Brown   hy = thi->Ly / info->my;
740c4762a1bSJed Brown 
741c4762a1bSJed Brown   etamin   = 1e100;
742c4762a1bSJed Brown   etamax   = 0;
743c4762a1bSJed Brown   beta2min = 1e100;
744c4762a1bSJed Brown   beta2max = 0;
745c4762a1bSJed Brown 
7469566063dSJacob Faibussowitsch   PetscCall(THIDAGetPrm(info->da, &prm));
747c4762a1bSJed Brown 
748c4762a1bSJed Brown   for (i = xs; i < xs + xm; i++) {
749c4762a1bSJed Brown     for (j = ys; j < ys + ym; j++) {
750c4762a1bSJed Brown       PrmNode pn[4];
751c4762a1bSJed Brown       QuadExtract(prm, i, j, pn);
752c4762a1bSJed Brown       for (k = 0; k < zm - 1; k++) {
753c4762a1bSJed Brown         PetscInt  ls = 0;
754c4762a1bSJed Brown         Node      n[8], *fn[8];
755c4762a1bSJed Brown         PetscReal zn[8], etabase = 0;
756c4762a1bSJed Brown         PrmHexGetZ(pn, k, zm, zn);
757c4762a1bSJed Brown         HexExtract(x, i, j, k, n);
758c4762a1bSJed Brown         HexExtractRef(f, i, j, k, fn);
759c4762a1bSJed Brown         if (thi->no_slip && k == 0) {
760c4762a1bSJed Brown           for (l = 0; l < 4; l++) n[l].u = n[l].v = 0;
761c4762a1bSJed Brown           /* The first 4 basis functions lie on the bottom layer, so their contribution is exactly 0, hence we can skip them */
762c4762a1bSJed Brown           ls = 4;
763c4762a1bSJed Brown         }
764c4762a1bSJed Brown         for (q = 0; q < 8; q++) {
765c4762a1bSJed Brown           PetscReal   dz[3], phi[8], dphi[8][3], jw, eta, deta;
766c4762a1bSJed Brown           PetscScalar du[3], dv[3], u, v;
767c4762a1bSJed Brown           HexGrad(HexQDeriv[q], zn, dz);
768c4762a1bSJed Brown           HexComputeGeometry(q, hx, hy, dz, phi, dphi, &jw);
769c4762a1bSJed Brown           PointwiseNonlinearity(thi, n, phi, dphi, &u, &v, du, dv, &eta, &deta);
770c4762a1bSJed Brown           jw /= thi->rhog; /* scales residuals to be O(1) */
771c4762a1bSJed Brown           if (q == 0) etabase = eta;
772c4762a1bSJed Brown           RangeUpdate(&etamin, &etamax, eta);
773c4762a1bSJed Brown           for (l = ls; l < 8; l++) { /* test functions */
774c4762a1bSJed Brown             const PetscReal ds[2] = {-PetscSinReal(thi->alpha), 0};
775c4762a1bSJed Brown             const PetscReal pp = phi[l], *dp = dphi[l];
776c4762a1bSJed Brown             fn[l]->u += dp[0] * jw * eta * (4. * du[0] + 2. * dv[1]) + dp[1] * jw * eta * (du[1] + dv[0]) + dp[2] * jw * eta * du[2] + pp * jw * thi->rhog * ds[0];
777c4762a1bSJed Brown             fn[l]->v += dp[1] * jw * eta * (2. * du[0] + 4. * dv[1]) + dp[0] * jw * eta * (du[1] + dv[0]) + dp[2] * jw * eta * dv[2] + pp * jw * thi->rhog * ds[1];
778c4762a1bSJed Brown           }
779c4762a1bSJed Brown         }
780c4762a1bSJed Brown         if (k == 0) { /* we are on a bottom face */
781c4762a1bSJed Brown           if (thi->no_slip) {
782c4762a1bSJed Brown             /* Note: Non-Galerkin coarse grid operators are very sensitive to the scaling of Dirichlet boundary
783c4762a1bSJed Brown             * conditions.  After shenanigans above, etabase contains the effective viscosity at the closest quadrature
784c4762a1bSJed Brown             * point to the bed.  We want the diagonal entry in the Dirichlet condition to have similar magnitude to the
785c4762a1bSJed Brown             * diagonal entry corresponding to the adjacent node.  The fundamental scaling of the viscous part is in
786c4762a1bSJed Brown             * diagu, diagv below.  This scaling is easy to recognize by considering the finite difference operator after
787c4762a1bSJed Brown             * scaling by element size.  The no-slip Dirichlet condition is scaled by this factor, and also in the
788c4762a1bSJed Brown             * assembled matrix (see the similar block in THIJacobianLocal).
789c4762a1bSJed Brown             *
790c4762a1bSJed Brown             * Note that the residual at this Dirichlet node is linear in the state at this node, but also depends
791c4762a1bSJed Brown             * (nonlinearly in general) on the neighboring interior nodes through the local viscosity.  This will make
792c4762a1bSJed Brown             * a matrix-free Jacobian have extra entries in the corresponding row.  We assemble only the diagonal part,
793c4762a1bSJed Brown             * so the solution will exactly satisfy the boundary condition after the first linear iteration.
794c4762a1bSJed Brown             */
795c4762a1bSJed Brown             const PetscReal   hz    = PetscRealPart(pn[0].h) / (zm - 1.);
796c4762a1bSJed Brown             const PetscScalar diagu = 2 * etabase / thi->rhog * (hx * hy / hz + hx * hz / hy + 4 * hy * hz / hx), diagv = 2 * etabase / thi->rhog * (hx * hy / hz + 4 * hx * hz / hy + hy * hz / hx);
797c4762a1bSJed Brown             fn[0]->u = thi->dirichlet_scale * diagu * x[i][j][k].u;
798c4762a1bSJed Brown             fn[0]->v = thi->dirichlet_scale * diagv * x[i][j][k].v;
799c4762a1bSJed Brown           } else { /* Integrate over bottom face to apply boundary condition */
800c4762a1bSJed Brown             for (q = 0; q < 4; q++) {
801c4762a1bSJed Brown               const PetscReal jw = 0.25 * hx * hy / thi->rhog, *phi = QuadQInterp[q];
802c4762a1bSJed Brown               PetscScalar     u = 0, v = 0, rbeta2 = 0;
803c4762a1bSJed Brown               PetscReal       beta2, dbeta2;
804c4762a1bSJed Brown               for (l = 0; l < 4; l++) {
805c4762a1bSJed Brown                 u += phi[l] * n[l].u;
806c4762a1bSJed Brown                 v += phi[l] * n[l].v;
807c4762a1bSJed Brown                 rbeta2 += phi[l] * pn[l].beta2;
808c4762a1bSJed Brown               }
809c4762a1bSJed Brown               THIFriction(thi, PetscRealPart(rbeta2), PetscRealPart(u * u + v * v) / 2, &beta2, &dbeta2);
810c4762a1bSJed Brown               RangeUpdate(&beta2min, &beta2max, beta2);
811c4762a1bSJed Brown               for (l = 0; l < 4; l++) {
812c4762a1bSJed Brown                 const PetscReal pp = phi[l];
813c4762a1bSJed Brown                 fn[ls + l]->u += pp * jw * beta2 * u;
814c4762a1bSJed Brown                 fn[ls + l]->v += pp * jw * beta2 * v;
815c4762a1bSJed Brown               }
816c4762a1bSJed Brown             }
817c4762a1bSJed Brown           }
818c4762a1bSJed Brown         }
819c4762a1bSJed Brown       }
820c4762a1bSJed Brown     }
821c4762a1bSJed Brown   }
822c4762a1bSJed Brown 
8239566063dSJacob Faibussowitsch   PetscCall(THIDARestorePrm(info->da, &prm));
824c4762a1bSJed Brown 
8259566063dSJacob Faibussowitsch   PetscCall(PRangeMinMax(&thi->eta, etamin, etamax));
8269566063dSJacob Faibussowitsch   PetscCall(PRangeMinMax(&thi->beta2, beta2min, beta2max));
827c4762a1bSJed Brown   PetscFunctionReturn(0);
828c4762a1bSJed Brown }
829c4762a1bSJed Brown 
8309371c9d4SSatish Balay static PetscErrorCode THIMatrixStatistics(THI thi, Mat B, PetscViewer viewer) {
831c4762a1bSJed Brown   PetscReal   nrm;
832c4762a1bSJed Brown   PetscInt    m;
833c4762a1bSJed Brown   PetscMPIInt rank;
834c4762a1bSJed Brown 
835c4762a1bSJed Brown   PetscFunctionBeginUser;
8369566063dSJacob Faibussowitsch   PetscCall(MatNorm(B, NORM_FROBENIUS, &nrm));
8379566063dSJacob Faibussowitsch   PetscCall(MatGetSize(B, &m, 0));
8389566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &rank));
839dd400576SPatrick Sanan   if (rank == 0) {
840c4762a1bSJed Brown     PetscScalar val0, val2;
8419566063dSJacob Faibussowitsch     PetscCall(MatGetValue(B, 0, 0, &val0));
8429566063dSJacob Faibussowitsch     PetscCall(MatGetValue(B, 2, 2, &val2));
8439371c9d4SSatish Balay     PetscCall(PetscViewerASCIIPrintf(viewer, "Matrix dim %" PetscInt_FMT " norm %8.2e (0,0) %8.2e  (2,2) %8.2e %8.2e <= eta <= %8.2e %8.2e <= beta2 <= %8.2e\n", m, (double)nrm, (double)PetscRealPart(val0), (double)PetscRealPart(val2),
8449371c9d4SSatish Balay                                      (double)thi->eta.cmin, (double)thi->eta.cmax, (double)thi->beta2.cmin, (double)thi->beta2.cmax));
845c4762a1bSJed Brown   }
846c4762a1bSJed Brown   PetscFunctionReturn(0);
847c4762a1bSJed Brown }
848c4762a1bSJed Brown 
8499371c9d4SSatish Balay static PetscErrorCode THISurfaceStatistics(DM da, Vec X, PetscReal *min, PetscReal *max, PetscReal *mean) {
850c4762a1bSJed Brown   Node     ***x;
851c4762a1bSJed Brown   PetscInt    i, j, xs, ys, zs, xm, ym, zm, mx, my, mz;
852c4762a1bSJed Brown   PetscReal   umin = 1e100, umax = -1e100;
853c4762a1bSJed Brown   PetscScalar usum = 0.0, gusum;
854c4762a1bSJed Brown 
855c4762a1bSJed Brown   PetscFunctionBeginUser;
856c4762a1bSJed Brown   *min = *max = *mean = 0;
8579566063dSJacob Faibussowitsch   PetscCall(DMDAGetInfo(da, 0, &mz, &my, &mx, 0, 0, 0, 0, 0, 0, 0, 0, 0));
8589566063dSJacob Faibussowitsch   PetscCall(DMDAGetCorners(da, &zs, &ys, &xs, &zm, &ym, &xm));
859e00437b9SBarry Smith   PetscCheck(zs == 0 && zm == mz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected decomposition");
8609566063dSJacob Faibussowitsch   PetscCall(DMDAVecGetArray(da, X, &x));
861c4762a1bSJed Brown   for (i = xs; i < xs + xm; i++) {
862c4762a1bSJed Brown     for (j = ys; j < ys + ym; j++) {
863c4762a1bSJed Brown       PetscReal u = PetscRealPart(x[i][j][zm - 1].u);
864c4762a1bSJed Brown       RangeUpdate(&umin, &umax, u);
865c4762a1bSJed Brown       usum += u;
866c4762a1bSJed Brown     }
867c4762a1bSJed Brown   }
8689566063dSJacob Faibussowitsch   PetscCall(DMDAVecRestoreArray(da, X, &x));
8699566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allreduce(&umin, min, 1, MPIU_REAL, MPIU_MIN, PetscObjectComm((PetscObject)da)));
8709566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allreduce(&umax, max, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)da)));
8719566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allreduce(&usum, &gusum, 1, MPIU_SCALAR, MPIU_SUM, PetscObjectComm((PetscObject)da)));
872c4762a1bSJed Brown   *mean = PetscRealPart(gusum) / (mx * my);
873c4762a1bSJed Brown   PetscFunctionReturn(0);
874c4762a1bSJed Brown }
875c4762a1bSJed Brown 
8769371c9d4SSatish Balay static PetscErrorCode THISolveStatistics(THI thi, SNES snes, PetscInt coarsened, const char name[]) {
877c4762a1bSJed Brown   MPI_Comm comm;
878c4762a1bSJed Brown   Vec      X;
879c4762a1bSJed Brown   DM       dm;
880c4762a1bSJed Brown 
881c4762a1bSJed Brown   PetscFunctionBeginUser;
8829566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)thi, &comm));
8839566063dSJacob Faibussowitsch   PetscCall(SNESGetSolution(snes, &X));
8849566063dSJacob Faibussowitsch   PetscCall(SNESGetDM(snes, &dm));
8859566063dSJacob Faibussowitsch   PetscCall(PetscPrintf(comm, "Solution statistics after solve: %s\n", name));
886c4762a1bSJed Brown   {
887c4762a1bSJed Brown     PetscInt            its, lits;
888c4762a1bSJed Brown     SNESConvergedReason reason;
8899566063dSJacob Faibussowitsch     PetscCall(SNESGetIterationNumber(snes, &its));
8909566063dSJacob Faibussowitsch     PetscCall(SNESGetConvergedReason(snes, &reason));
8919566063dSJacob Faibussowitsch     PetscCall(SNESGetLinearSolveIterations(snes, &lits));
89263a3b9bcSJacob Faibussowitsch     PetscCall(PetscPrintf(comm, "%s: Number of SNES iterations = %" PetscInt_FMT ", total linear iterations = %" PetscInt_FMT "\n", SNESConvergedReasons[reason], its, lits));
893c4762a1bSJed Brown   }
894c4762a1bSJed Brown   {
895c4762a1bSJed Brown     PetscReal          nrm2, tmin[3] = {1e100, 1e100, 1e100}, tmax[3] = {-1e100, -1e100, -1e100}, min[3], max[3];
896c4762a1bSJed Brown     PetscInt           i, j, m;
897c4762a1bSJed Brown     const PetscScalar *x;
8989566063dSJacob Faibussowitsch     PetscCall(VecNorm(X, NORM_2, &nrm2));
8999566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(X, &m));
9009566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(X, &x));
901c4762a1bSJed Brown     for (i = 0; i < m; i += 2) {
902c4762a1bSJed Brown       PetscReal u = PetscRealPart(x[i]), v = PetscRealPart(x[i + 1]), c = PetscSqrtReal(u * u + v * v);
903c4762a1bSJed Brown       tmin[0] = PetscMin(u, tmin[0]);
904c4762a1bSJed Brown       tmin[1] = PetscMin(v, tmin[1]);
905c4762a1bSJed Brown       tmin[2] = PetscMin(c, tmin[2]);
906c4762a1bSJed Brown       tmax[0] = PetscMax(u, tmax[0]);
907c4762a1bSJed Brown       tmax[1] = PetscMax(v, tmax[1]);
908c4762a1bSJed Brown       tmax[2] = PetscMax(c, tmax[2]);
909c4762a1bSJed Brown     }
9109566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(X, &x));
9119566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Allreduce(tmin, min, 3, MPIU_REAL, MPIU_MIN, PetscObjectComm((PetscObject)thi)));
9129566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Allreduce(tmax, max, 3, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)thi)));
913c4762a1bSJed Brown     /* Dimensionalize to meters/year */
914c4762a1bSJed Brown     nrm2 *= thi->units->year / thi->units->meter;
915c4762a1bSJed Brown     for (j = 0; j < 3; j++) {
916c4762a1bSJed Brown       min[j] *= thi->units->year / thi->units->meter;
917c4762a1bSJed Brown       max[j] *= thi->units->year / thi->units->meter;
918c4762a1bSJed Brown     }
919c4762a1bSJed Brown     if (min[0] == 0.0) min[0] = 0.0;
9209566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(comm, "|X|_2 %g   %g <= u <=  %g   %g <= v <=  %g   %g <= c <=  %g \n", (double)nrm2, (double)min[0], (double)max[0], (double)min[1], (double)max[1], (double)min[2], (double)max[2]));
921c4762a1bSJed Brown     {
922c4762a1bSJed Brown       PetscReal umin, umax, umean;
9239566063dSJacob Faibussowitsch       PetscCall(THISurfaceStatistics(dm, X, &umin, &umax, &umean));
924c4762a1bSJed Brown       umin *= thi->units->year / thi->units->meter;
925c4762a1bSJed Brown       umax *= thi->units->year / thi->units->meter;
926c4762a1bSJed Brown       umean *= thi->units->year / thi->units->meter;
9279566063dSJacob Faibussowitsch       PetscCall(PetscPrintf(comm, "Surface statistics: u in [%12.6e, %12.6e] mean %12.6e\n", (double)umin, (double)umax, (double)umean));
928c4762a1bSJed Brown     }
929c4762a1bSJed Brown     /* These values stay nondimensional */
9309566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(comm, "Global eta range   %g to %g converged range %g to %g\n", (double)thi->eta.min, (double)thi->eta.max, (double)thi->eta.cmin, (double)thi->eta.cmax));
9319566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(comm, "Global beta2 range %g to %g converged range %g to %g\n", (double)thi->beta2.min, (double)thi->beta2.max, (double)thi->beta2.cmin, (double)thi->beta2.cmax));
932c4762a1bSJed Brown   }
933c4762a1bSJed Brown   PetscFunctionReturn(0);
934c4762a1bSJed Brown }
935c4762a1bSJed Brown 
9369371c9d4SSatish Balay static PetscErrorCode THIJacobianLocal_2D(DMDALocalInfo *info, Node **x, Mat J, Mat B, THI thi) {
937c4762a1bSJed Brown   PetscInt  xs, ys, xm, ym, i, j, q, l, ll;
938c4762a1bSJed Brown   PetscReal hx, hy;
939c4762a1bSJed Brown   PrmNode **prm;
940c4762a1bSJed Brown 
941c4762a1bSJed Brown   PetscFunctionBeginUser;
942c4762a1bSJed Brown   xs = info->ys;
943c4762a1bSJed Brown   ys = info->xs;
944c4762a1bSJed Brown   xm = info->ym;
945c4762a1bSJed Brown   ym = info->xm;
946c4762a1bSJed Brown   hx = thi->Lx / info->my;
947c4762a1bSJed Brown   hy = thi->Ly / info->mx;
948c4762a1bSJed Brown 
9499566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(B));
9509566063dSJacob Faibussowitsch   PetscCall(THIDAGetPrm(info->da, &prm));
951c4762a1bSJed Brown 
952c4762a1bSJed Brown   for (i = xs; i < xs + xm; i++) {
953c4762a1bSJed Brown     for (j = ys; j < ys + ym; j++) {
954c4762a1bSJed Brown       Node        n[4];
955c4762a1bSJed Brown       PrmNode     pn[4];
956c4762a1bSJed Brown       PetscScalar Ke[4 * 2][4 * 2];
957c4762a1bSJed Brown       QuadExtract(prm, i, j, pn);
958c4762a1bSJed Brown       QuadExtract(x, i, j, n);
9599566063dSJacob Faibussowitsch       PetscCall(PetscMemzero(Ke, sizeof(Ke)));
960c4762a1bSJed Brown       for (q = 0; q < 4; q++) {
961c4762a1bSJed Brown         PetscReal   phi[4], dphi[4][2], jw, eta, deta, beta2, dbeta2;
962c4762a1bSJed Brown         PetscScalar u, v, du[2], dv[2], h = 0, rbeta2 = 0;
963c4762a1bSJed Brown         for (l = 0; l < 4; l++) {
964c4762a1bSJed Brown           phi[l]     = QuadQInterp[q][l];
965c4762a1bSJed Brown           dphi[l][0] = QuadQDeriv[q][l][0] * 2. / hx;
966c4762a1bSJed Brown           dphi[l][1] = QuadQDeriv[q][l][1] * 2. / hy;
967c4762a1bSJed Brown           h += phi[l] * pn[l].h;
968c4762a1bSJed Brown           rbeta2 += phi[l] * pn[l].beta2;
969c4762a1bSJed Brown         }
970c4762a1bSJed Brown         jw = 0.25 * hx * hy / thi->rhog; /* rhog is only scaling */
971c4762a1bSJed Brown         PointwiseNonlinearity2D(thi, n, phi, dphi, &u, &v, du, dv, &eta, &deta);
972c4762a1bSJed Brown         THIFriction(thi, PetscRealPart(rbeta2), PetscRealPart(u * u + v * v) / 2, &beta2, &dbeta2);
973c4762a1bSJed Brown         for (l = 0; l < 4; l++) {
974c4762a1bSJed Brown           const PetscReal pp = phi[l], *dp = dphi[l];
975c4762a1bSJed Brown           for (ll = 0; ll < 4; ll++) {
976c4762a1bSJed Brown             const PetscReal ppl = phi[ll], *dpl = dphi[ll];
977c4762a1bSJed Brown             PetscScalar     dgdu, dgdv;
978c4762a1bSJed Brown             dgdu = 2. * du[0] * dpl[0] + dv[1] * dpl[0] + 0.5 * (du[1] + dv[0]) * dpl[1];
979c4762a1bSJed Brown             dgdv = 2. * dv[1] * dpl[1] + du[0] * dpl[1] + 0.5 * (du[1] + dv[0]) * dpl[0];
980c4762a1bSJed Brown             /* Picard part */
981c4762a1bSJed Brown             Ke[l * 2 + 0][ll * 2 + 0] += dp[0] * jw * eta * 4. * dpl[0] + dp[1] * jw * eta * dpl[1] + pp * jw * (beta2 / h) * ppl * thi->ssa_friction_scale;
982c4762a1bSJed Brown             Ke[l * 2 + 0][ll * 2 + 1] += dp[0] * jw * eta * 2. * dpl[1] + dp[1] * jw * eta * dpl[0];
983c4762a1bSJed Brown             Ke[l * 2 + 1][ll * 2 + 0] += dp[1] * jw * eta * 2. * dpl[0] + dp[0] * jw * eta * dpl[1];
984c4762a1bSJed Brown             Ke[l * 2 + 1][ll * 2 + 1] += dp[1] * jw * eta * 4. * dpl[1] + dp[0] * jw * eta * dpl[0] + pp * jw * (beta2 / h) * ppl * thi->ssa_friction_scale;
985c4762a1bSJed Brown             /* extra Newton terms */
986c4762a1bSJed Brown             Ke[l * 2 + 0][ll * 2 + 0] += dp[0] * jw * deta * dgdu * (4. * du[0] + 2. * dv[1]) + dp[1] * jw * deta * dgdu * (du[1] + dv[0]) + pp * jw * (dbeta2 / h) * u * u * ppl * thi->ssa_friction_scale;
987c4762a1bSJed Brown             Ke[l * 2 + 0][ll * 2 + 1] += dp[0] * jw * deta * dgdv * (4. * du[0] + 2. * dv[1]) + dp[1] * jw * deta * dgdv * (du[1] + dv[0]) + pp * jw * (dbeta2 / h) * u * v * ppl * thi->ssa_friction_scale;
988c4762a1bSJed Brown             Ke[l * 2 + 1][ll * 2 + 0] += dp[1] * jw * deta * dgdu * (4. * dv[1] + 2. * du[0]) + dp[0] * jw * deta * dgdu * (du[1] + dv[0]) + pp * jw * (dbeta2 / h) * v * u * ppl * thi->ssa_friction_scale;
989c4762a1bSJed Brown             Ke[l * 2 + 1][ll * 2 + 1] += dp[1] * jw * deta * dgdv * (4. * dv[1] + 2. * du[0]) + dp[0] * jw * deta * dgdv * (du[1] + dv[0]) + pp * jw * (dbeta2 / h) * v * v * ppl * thi->ssa_friction_scale;
990c4762a1bSJed Brown           }
991c4762a1bSJed Brown         }
992c4762a1bSJed Brown       }
993c4762a1bSJed Brown       {
9949371c9d4SSatish Balay         const MatStencil rc[4] = {
9959371c9d4SSatish Balay           {0, i,     j,     0},
9969371c9d4SSatish Balay           {0, i + 1, j,     0},
9979371c9d4SSatish Balay           {0, i + 1, j + 1, 0},
9989371c9d4SSatish Balay           {0, i,     j + 1, 0}
9999371c9d4SSatish Balay         };
10009566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlockedStencil(B, 4, rc, 4, rc, &Ke[0][0], ADD_VALUES));
1001c4762a1bSJed Brown       }
1002c4762a1bSJed Brown     }
1003c4762a1bSJed Brown   }
10049566063dSJacob Faibussowitsch   PetscCall(THIDARestorePrm(info->da, &prm));
1005c4762a1bSJed Brown 
10069566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
10079566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
10089566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_SYMMETRIC, PETSC_TRUE));
10099566063dSJacob Faibussowitsch   if (thi->verbose) PetscCall(THIMatrixStatistics(thi, B, PETSC_VIEWER_STDOUT_WORLD));
1010c4762a1bSJed Brown   PetscFunctionReturn(0);
1011c4762a1bSJed Brown }
1012c4762a1bSJed Brown 
10139371c9d4SSatish Balay static PetscErrorCode THIJacobianLocal_3D(DMDALocalInfo *info, Node ***x, Mat B, THI thi, THIAssemblyMode amode) {
1014c4762a1bSJed Brown   PetscInt  xs, ys, xm, ym, zm, i, j, k, q, l, ll;
1015c4762a1bSJed Brown   PetscReal hx, hy;
1016c4762a1bSJed Brown   PrmNode **prm;
1017c4762a1bSJed Brown 
1018c4762a1bSJed Brown   PetscFunctionBeginUser;
1019c4762a1bSJed Brown   xs = info->zs;
1020c4762a1bSJed Brown   ys = info->ys;
1021c4762a1bSJed Brown   xm = info->zm;
1022c4762a1bSJed Brown   ym = info->ym;
1023c4762a1bSJed Brown   zm = info->xm;
1024c4762a1bSJed Brown   hx = thi->Lx / info->mz;
1025c4762a1bSJed Brown   hy = thi->Ly / info->my;
1026c4762a1bSJed Brown 
10279566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(B));
10289566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_SUBSET_OFF_PROC_ENTRIES, PETSC_TRUE));
10299566063dSJacob Faibussowitsch   PetscCall(THIDAGetPrm(info->da, &prm));
1030c4762a1bSJed Brown 
1031c4762a1bSJed Brown   for (i = xs; i < xs + xm; i++) {
1032c4762a1bSJed Brown     for (j = ys; j < ys + ym; j++) {
1033c4762a1bSJed Brown       PrmNode pn[4];
1034c4762a1bSJed Brown       QuadExtract(prm, i, j, pn);
1035c4762a1bSJed Brown       for (k = 0; k < zm - 1; k++) {
1036c4762a1bSJed Brown         Node        n[8];
1037c4762a1bSJed Brown         PetscReal   zn[8], etabase = 0;
1038c4762a1bSJed Brown         PetscScalar Ke[8 * 2][8 * 2];
1039c4762a1bSJed Brown         PetscInt    ls = 0;
1040c4762a1bSJed Brown 
1041c4762a1bSJed Brown         PrmHexGetZ(pn, k, zm, zn);
1042c4762a1bSJed Brown         HexExtract(x, i, j, k, n);
10439566063dSJacob Faibussowitsch         PetscCall(PetscMemzero(Ke, sizeof(Ke)));
1044c4762a1bSJed Brown         if (thi->no_slip && k == 0) {
1045c4762a1bSJed Brown           for (l = 0; l < 4; l++) n[l].u = n[l].v = 0;
1046c4762a1bSJed Brown           ls = 4;
1047c4762a1bSJed Brown         }
1048c4762a1bSJed Brown         for (q = 0; q < 8; q++) {
1049c4762a1bSJed Brown           PetscReal   dz[3], phi[8], dphi[8][3], jw, eta, deta;
1050c4762a1bSJed Brown           PetscScalar du[3], dv[3], u, v;
1051c4762a1bSJed Brown           HexGrad(HexQDeriv[q], zn, dz);
1052c4762a1bSJed Brown           HexComputeGeometry(q, hx, hy, dz, phi, dphi, &jw);
1053c4762a1bSJed Brown           PointwiseNonlinearity(thi, n, phi, dphi, &u, &v, du, dv, &eta, &deta);
1054c4762a1bSJed Brown           jw /= thi->rhog; /* residuals are scaled by this factor */
1055c4762a1bSJed Brown           if (q == 0) etabase = eta;
1056c4762a1bSJed Brown           for (l = ls; l < 8; l++) { /* test functions */
1057c4762a1bSJed Brown             const PetscReal *PETSC_RESTRICT dp = dphi[l];
1058c4762a1bSJed Brown #if USE_SSE2_KERNELS
1059c4762a1bSJed Brown             /* gcc (up to my 4.5 snapshot) is really bad at hoisting intrinsics so we do it manually */
10609371c9d4SSatish Balay             __m128d p4 = _mm_set1_pd(4), p2 = _mm_set1_pd(2), p05 = _mm_set1_pd(0.5), p42 = _mm_setr_pd(4, 2), p24 = _mm_shuffle_pd(p42, p42, _MM_SHUFFLE2(0, 1)), du0 = _mm_set1_pd(du[0]), du1 = _mm_set1_pd(du[1]), du2 = _mm_set1_pd(du[2]), dv0 = _mm_set1_pd(dv[0]), dv1 = _mm_set1_pd(dv[1]), dv2 = _mm_set1_pd(dv[2]), jweta = _mm_set1_pd(jw * eta), jwdeta = _mm_set1_pd(jw * deta), dp0 = _mm_set1_pd(dp[0]), dp1 = _mm_set1_pd(dp[1]), dp2 = _mm_set1_pd(dp[2]), dp0jweta = _mm_mul_pd(dp0, jweta), dp1jweta = _mm_mul_pd(dp1, jweta), dp2jweta = _mm_mul_pd(dp2, jweta), p4du0p2dv1 = _mm_add_pd(_mm_mul_pd(p4, du0), _mm_mul_pd(p2, dv1)), /* 4 du0 + 2 dv1 */
1061c4762a1bSJed Brown               p4dv1p2du0 = _mm_add_pd(_mm_mul_pd(p4, dv1), _mm_mul_pd(p2, du0)), /* 4 dv1 + 2 du0 */
1062c4762a1bSJed Brown               pdu2dv2    = _mm_unpacklo_pd(du2, dv2),                            /* [du2, dv2] */
1063c4762a1bSJed Brown               du1pdv0    = _mm_add_pd(du1, dv0),                                 /* du1 + dv0 */
1064c4762a1bSJed Brown               t1         = _mm_mul_pd(dp0, p4du0p2dv1),                          /* dp0 (4 du0 + 2 dv1) */
1065c4762a1bSJed Brown               t2         = _mm_mul_pd(dp1, p4dv1p2du0);                          /* dp1 (4 dv1 + 2 du0) */
1066c4762a1bSJed Brown 
1067c4762a1bSJed Brown #endif
1068c4762a1bSJed Brown #if defined COMPUTE_LOWER_TRIANGULAR      /* The element matrices are always symmetric so computing the lower-triangular part is not necessary */
1069c4762a1bSJed Brown             for (ll = ls; ll < 8; ll++) { /* trial functions */
1070c4762a1bSJed Brown #else
1071c4762a1bSJed Brown             for (ll = l; ll < 8; ll++) {
1072c4762a1bSJed Brown #endif
1073c4762a1bSJed Brown               const PetscReal *PETSC_RESTRICT dpl = dphi[ll];
1074c4762a1bSJed Brown               if (amode == THIASSEMBLY_TRIDIAGONAL && (l - ll) % 4) continue; /* these entries would not be inserted */
1075c4762a1bSJed Brown #if !USE_SSE2_KERNELS
1076c4762a1bSJed Brown               /* The analytic Jacobian in nice, easy-to-read form */
1077c4762a1bSJed Brown               {
1078c4762a1bSJed Brown                 PetscScalar dgdu, dgdv;
1079c4762a1bSJed Brown                 dgdu = 2. * du[0] * dpl[0] + dv[1] * dpl[0] + 0.5 * (du[1] + dv[0]) * dpl[1] + 0.5 * du[2] * dpl[2];
1080c4762a1bSJed Brown                 dgdv = 2. * dv[1] * dpl[1] + du[0] * dpl[1] + 0.5 * (du[1] + dv[0]) * dpl[0] + 0.5 * dv[2] * dpl[2];
1081c4762a1bSJed Brown                 /* Picard part */
1082c4762a1bSJed Brown                 Ke[l * 2 + 0][ll * 2 + 0] += dp[0] * jw * eta * 4. * dpl[0] + dp[1] * jw * eta * dpl[1] + dp[2] * jw * eta * dpl[2];
1083c4762a1bSJed Brown                 Ke[l * 2 + 0][ll * 2 + 1] += dp[0] * jw * eta * 2. * dpl[1] + dp[1] * jw * eta * dpl[0];
1084c4762a1bSJed Brown                 Ke[l * 2 + 1][ll * 2 + 0] += dp[1] * jw * eta * 2. * dpl[0] + dp[0] * jw * eta * dpl[1];
1085c4762a1bSJed Brown                 Ke[l * 2 + 1][ll * 2 + 1] += dp[1] * jw * eta * 4. * dpl[1] + dp[0] * jw * eta * dpl[0] + dp[2] * jw * eta * dpl[2];
1086c4762a1bSJed Brown                 /* extra Newton terms */
1087c4762a1bSJed Brown                 Ke[l * 2 + 0][ll * 2 + 0] += dp[0] * jw * deta * dgdu * (4. * du[0] + 2. * dv[1]) + dp[1] * jw * deta * dgdu * (du[1] + dv[0]) + dp[2] * jw * deta * dgdu * du[2];
1088c4762a1bSJed Brown                 Ke[l * 2 + 0][ll * 2 + 1] += dp[0] * jw * deta * dgdv * (4. * du[0] + 2. * dv[1]) + dp[1] * jw * deta * dgdv * (du[1] + dv[0]) + dp[2] * jw * deta * dgdv * du[2];
1089c4762a1bSJed Brown                 Ke[l * 2 + 1][ll * 2 + 0] += dp[1] * jw * deta * dgdu * (4. * dv[1] + 2. * du[0]) + dp[0] * jw * deta * dgdu * (du[1] + dv[0]) + dp[2] * jw * deta * dgdu * dv[2];
1090c4762a1bSJed Brown                 Ke[l * 2 + 1][ll * 2 + 1] += dp[1] * jw * deta * dgdv * (4. * dv[1] + 2. * du[0]) + dp[0] * jw * deta * dgdv * (du[1] + dv[0]) + dp[2] * jw * deta * dgdv * dv[2];
1091c4762a1bSJed Brown               }
1092c4762a1bSJed Brown #else
1093c4762a1bSJed Brown               /* This SSE2 code is an exact replica of above, but uses explicit packed instructions for some speed
1094c4762a1bSJed Brown               * benefit.  On my hardware, these intrinsics are almost twice as fast as above, reducing total assembly cost
1095c4762a1bSJed Brown               * by 25 to 30 percent. */
1096c4762a1bSJed Brown               {
10979371c9d4SSatish Balay                 __m128d keu = _mm_loadu_pd(&Ke[l * 2 + 0][ll * 2 + 0]), kev = _mm_loadu_pd(&Ke[l * 2 + 1][ll * 2 + 0]), dpl01 = _mm_loadu_pd(&dpl[0]), dpl10 = _mm_shuffle_pd(dpl01, dpl01, _MM_SHUFFLE2(0, 1)), dpl2 = _mm_set_sd(dpl[2]), t0, t3, pdgduv;
10989371c9d4SSatish Balay                 keu    = _mm_add_pd(keu, _mm_add_pd(_mm_mul_pd(_mm_mul_pd(dp0jweta, p42), dpl01), _mm_add_pd(_mm_mul_pd(dp1jweta, dpl10), _mm_mul_pd(dp2jweta, dpl2))));
10999371c9d4SSatish Balay                 kev    = _mm_add_pd(kev, _mm_add_pd(_mm_mul_pd(_mm_mul_pd(dp1jweta, p24), dpl01), _mm_add_pd(_mm_mul_pd(dp0jweta, dpl10), _mm_mul_pd(dp2jweta, _mm_shuffle_pd(dpl2, dpl2, _MM_SHUFFLE2(0, 1))))));
11009371c9d4SSatish Balay                 pdgduv = _mm_mul_pd(p05, _mm_add_pd(_mm_add_pd(_mm_mul_pd(p42, _mm_mul_pd(du0, dpl01)), _mm_mul_pd(p24, _mm_mul_pd(dv1, dpl01))), _mm_add_pd(_mm_mul_pd(du1pdv0, dpl10), _mm_mul_pd(pdu2dv2, _mm_set1_pd(dpl[2]))))); /* [dgdu, dgdv] */
1101c4762a1bSJed Brown                 t0     = _mm_mul_pd(jwdeta, pdgduv); /* jw deta [dgdu, dgdv] */
1102c4762a1bSJed Brown                 t3     = _mm_mul_pd(t0, du1pdv0);    /* t0 (du1 + dv0) */
11039371c9d4SSatish Balay                 _mm_storeu_pd(&Ke[l * 2 + 0][ll * 2 + 0], _mm_add_pd(keu, _mm_add_pd(_mm_mul_pd(t1, t0), _mm_add_pd(_mm_mul_pd(dp1, t3), _mm_mul_pd(t0, _mm_mul_pd(dp2, du2))))));
11049371c9d4SSatish Balay                 _mm_storeu_pd(&Ke[l * 2 + 1][ll * 2 + 0], _mm_add_pd(kev, _mm_add_pd(_mm_mul_pd(t2, t0), _mm_add_pd(_mm_mul_pd(dp0, t3), _mm_mul_pd(t0, _mm_mul_pd(dp2, dv2))))));
1105c4762a1bSJed Brown               }
1106c4762a1bSJed Brown #endif
1107c4762a1bSJed Brown             }
1108c4762a1bSJed Brown           }
1109c4762a1bSJed Brown         }
1110c4762a1bSJed Brown         if (k == 0) { /* on a bottom face */
1111c4762a1bSJed Brown           if (thi->no_slip) {
1112c4762a1bSJed Brown             const PetscReal   hz    = PetscRealPart(pn[0].h) / (zm - 1);
1113c4762a1bSJed Brown             const PetscScalar diagu = 2 * etabase / thi->rhog * (hx * hy / hz + hx * hz / hy + 4 * hy * hz / hx), diagv = 2 * etabase / thi->rhog * (hx * hy / hz + 4 * hx * hz / hy + hy * hz / hx);
1114c4762a1bSJed Brown             Ke[0][0] = thi->dirichlet_scale * diagu;
1115c4762a1bSJed Brown             Ke[1][1] = thi->dirichlet_scale * diagv;
1116c4762a1bSJed Brown           } else {
1117c4762a1bSJed Brown             for (q = 0; q < 4; q++) {
1118c4762a1bSJed Brown               const PetscReal jw = 0.25 * hx * hy / thi->rhog, *phi = QuadQInterp[q];
1119c4762a1bSJed Brown               PetscScalar     u = 0, v = 0, rbeta2 = 0;
1120c4762a1bSJed Brown               PetscReal       beta2, dbeta2;
1121c4762a1bSJed Brown               for (l = 0; l < 4; l++) {
1122c4762a1bSJed Brown                 u += phi[l] * n[l].u;
1123c4762a1bSJed Brown                 v += phi[l] * n[l].v;
1124c4762a1bSJed Brown                 rbeta2 += phi[l] * pn[l].beta2;
1125c4762a1bSJed Brown               }
1126c4762a1bSJed Brown               THIFriction(thi, PetscRealPart(rbeta2), PetscRealPart(u * u + v * v) / 2, &beta2, &dbeta2);
1127c4762a1bSJed Brown               for (l = 0; l < 4; l++) {
1128c4762a1bSJed Brown                 const PetscReal pp = phi[l];
1129c4762a1bSJed Brown                 for (ll = 0; ll < 4; ll++) {
1130c4762a1bSJed Brown                   const PetscReal ppl = phi[ll];
1131c4762a1bSJed Brown                   Ke[l * 2 + 0][ll * 2 + 0] += pp * jw * beta2 * ppl + pp * jw * dbeta2 * u * u * ppl;
1132c4762a1bSJed Brown                   Ke[l * 2 + 0][ll * 2 + 1] += pp * jw * dbeta2 * u * v * ppl;
1133c4762a1bSJed Brown                   Ke[l * 2 + 1][ll * 2 + 0] += pp * jw * dbeta2 * v * u * ppl;
1134c4762a1bSJed Brown                   Ke[l * 2 + 1][ll * 2 + 1] += pp * jw * beta2 * ppl + pp * jw * dbeta2 * v * v * ppl;
1135c4762a1bSJed Brown                 }
1136c4762a1bSJed Brown               }
1137c4762a1bSJed Brown             }
1138c4762a1bSJed Brown           }
1139c4762a1bSJed Brown         }
1140c4762a1bSJed Brown         {
11419371c9d4SSatish Balay           const MatStencil rc[8] = {
11429371c9d4SSatish Balay             {i,     j,     k,     0},
11439371c9d4SSatish Balay             {i + 1, j,     k,     0},
11449371c9d4SSatish Balay             {i + 1, j + 1, k,     0},
11459371c9d4SSatish Balay             {i,     j + 1, k,     0},
11469371c9d4SSatish Balay             {i,     j,     k + 1, 0},
11479371c9d4SSatish Balay             {i + 1, j,     k + 1, 0},
11489371c9d4SSatish Balay             {i + 1, j + 1, k + 1, 0},
11499371c9d4SSatish Balay             {i,     j + 1, k + 1, 0}
11509371c9d4SSatish Balay           };
1151c4762a1bSJed Brown           if (amode == THIASSEMBLY_TRIDIAGONAL) {
1152c4762a1bSJed Brown             for (l = 0; l < 4; l++) { /* Copy out each of the blocks, discarding horizontal coupling */
1153c4762a1bSJed Brown               const PetscInt   l4     = l + 4;
11549371c9d4SSatish Balay               const MatStencil rcl[2] = {
11559371c9d4SSatish Balay                 {rc[l].k,  rc[l].j,  rc[l].i,  0},
11569371c9d4SSatish Balay                 {rc[l4].k, rc[l4].j, rc[l4].i, 0}
11579371c9d4SSatish Balay               };
1158c4762a1bSJed Brown #if defined COMPUTE_LOWER_TRIANGULAR
11599371c9d4SSatish Balay               const PetscScalar Kel[4][4] = {
11609371c9d4SSatish Balay                 {Ke[2 * l + 0][2 * l + 0],  Ke[2 * l + 0][2 * l + 1],  Ke[2 * l + 0][2 * l4 + 0],  Ke[2 * l + 0][2 * l4 + 1] },
1161c4762a1bSJed Brown                 {Ke[2 * l + 1][2 * l + 0],  Ke[2 * l + 1][2 * l + 1],  Ke[2 * l + 1][2 * l4 + 0],  Ke[2 * l + 1][2 * l4 + 1] },
1162c4762a1bSJed Brown                 {Ke[2 * l4 + 0][2 * l + 0], Ke[2 * l4 + 0][2 * l + 1], Ke[2 * l4 + 0][2 * l4 + 0], Ke[2 * l4 + 0][2 * l4 + 1]},
11639371c9d4SSatish Balay                 {Ke[2 * l4 + 1][2 * l + 0], Ke[2 * l4 + 1][2 * l + 1], Ke[2 * l4 + 1][2 * l4 + 0], Ke[2 * l4 + 1][2 * l4 + 1]}
11649371c9d4SSatish Balay               };
1165c4762a1bSJed Brown #else
1166c4762a1bSJed Brown               /* Same as above except for the lower-left block */
11679371c9d4SSatish Balay               const PetscScalar Kel[4][4] = {
11689371c9d4SSatish Balay                 {Ke[2 * l + 0][2 * l + 0],  Ke[2 * l + 0][2 * l + 1],  Ke[2 * l + 0][2 * l4 + 0],  Ke[2 * l + 0][2 * l4 + 1] },
1169c4762a1bSJed Brown                 {Ke[2 * l + 1][2 * l + 0],  Ke[2 * l + 1][2 * l + 1],  Ke[2 * l + 1][2 * l4 + 0],  Ke[2 * l + 1][2 * l4 + 1] },
1170c4762a1bSJed Brown                 {Ke[2 * l + 0][2 * l4 + 0], Ke[2 * l + 1][2 * l4 + 0], Ke[2 * l4 + 0][2 * l4 + 0], Ke[2 * l4 + 0][2 * l4 + 1]},
11719371c9d4SSatish Balay                 {Ke[2 * l + 0][2 * l4 + 1], Ke[2 * l + 1][2 * l4 + 1], Ke[2 * l4 + 1][2 * l4 + 0], Ke[2 * l4 + 1][2 * l4 + 1]}
11729371c9d4SSatish Balay               };
1173c4762a1bSJed Brown #endif
11749566063dSJacob Faibussowitsch               PetscCall(MatSetValuesBlockedStencil(B, 2, rcl, 2, rcl, &Kel[0][0], ADD_VALUES));
1175c4762a1bSJed Brown             }
1176c4762a1bSJed Brown           } else {
1177c4762a1bSJed Brown #if !defined COMPUTE_LOWER_TRIANGULAR /* fill in lower-triangular part, this is really cheap compared to computing the entries */
1178c4762a1bSJed Brown             for (l = 0; l < 8; l++) {
1179c4762a1bSJed Brown               for (ll = l + 1; ll < 8; ll++) {
1180c4762a1bSJed Brown                 Ke[ll * 2 + 0][l * 2 + 0] = Ke[l * 2 + 0][ll * 2 + 0];
1181c4762a1bSJed Brown                 Ke[ll * 2 + 1][l * 2 + 0] = Ke[l * 2 + 0][ll * 2 + 1];
1182c4762a1bSJed Brown                 Ke[ll * 2 + 0][l * 2 + 1] = Ke[l * 2 + 1][ll * 2 + 0];
1183c4762a1bSJed Brown                 Ke[ll * 2 + 1][l * 2 + 1] = Ke[l * 2 + 1][ll * 2 + 1];
1184c4762a1bSJed Brown               }
1185c4762a1bSJed Brown             }
1186c4762a1bSJed Brown #endif
11879566063dSJacob Faibussowitsch             PetscCall(MatSetValuesBlockedStencil(B, 8, rc, 8, rc, &Ke[0][0], ADD_VALUES));
1188c4762a1bSJed Brown           }
1189c4762a1bSJed Brown         }
1190c4762a1bSJed Brown       }
1191c4762a1bSJed Brown     }
1192c4762a1bSJed Brown   }
11939566063dSJacob Faibussowitsch   PetscCall(THIDARestorePrm(info->da, &prm));
1194c4762a1bSJed Brown 
11959566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
11969566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
11979566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_SYMMETRIC, PETSC_TRUE));
11989566063dSJacob Faibussowitsch   if (thi->verbose) PetscCall(THIMatrixStatistics(thi, B, PETSC_VIEWER_STDOUT_WORLD));
1199c4762a1bSJed Brown   PetscFunctionReturn(0);
1200c4762a1bSJed Brown }
1201c4762a1bSJed Brown 
12029371c9d4SSatish Balay static PetscErrorCode THIJacobianLocal_3D_Full(DMDALocalInfo *info, Node ***x, Mat A, Mat B, THI thi) {
1203c4762a1bSJed Brown   PetscFunctionBeginUser;
12049566063dSJacob Faibussowitsch   PetscCall(THIJacobianLocal_3D(info, x, B, thi, THIASSEMBLY_FULL));
1205c4762a1bSJed Brown   PetscFunctionReturn(0);
1206c4762a1bSJed Brown }
1207c4762a1bSJed Brown 
12089371c9d4SSatish Balay static PetscErrorCode THIJacobianLocal_3D_Tridiagonal(DMDALocalInfo *info, Node ***x, Mat A, Mat B, THI thi) {
1209c4762a1bSJed Brown   PetscFunctionBeginUser;
12109566063dSJacob Faibussowitsch   PetscCall(THIJacobianLocal_3D(info, x, B, thi, THIASSEMBLY_TRIDIAGONAL));
1211c4762a1bSJed Brown   PetscFunctionReturn(0);
1212c4762a1bSJed Brown }
1213c4762a1bSJed Brown 
12149371c9d4SSatish Balay static PetscErrorCode DMRefineHierarchy_THI(DM dac0, PetscInt nlevels, DM hierarchy[]) {
1215c4762a1bSJed Brown   THI             thi;
1216c4762a1bSJed Brown   PetscInt        dim, M, N, m, n, s, dof;
1217c4762a1bSJed Brown   DM              dac, daf;
1218c4762a1bSJed Brown   DMDAStencilType st;
1219c4762a1bSJed Brown   DM_DA          *ddf, *ddc;
1220c4762a1bSJed Brown 
1221c4762a1bSJed Brown   PetscFunctionBeginUser;
12229566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)dac0, "THI", (PetscObject *)&thi));
122328b400f6SJacob Faibussowitsch   PetscCheck(thi, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot refine this DMDA, missing composed THI instance");
1224c4762a1bSJed Brown   if (nlevels > 1) {
12259566063dSJacob Faibussowitsch     PetscCall(DMRefineHierarchy(dac0, nlevels - 1, hierarchy));
1226c4762a1bSJed Brown     dac = hierarchy[nlevels - 2];
1227c4762a1bSJed Brown   } else {
1228c4762a1bSJed Brown     dac = dac0;
1229c4762a1bSJed Brown   }
12309566063dSJacob Faibussowitsch   PetscCall(DMDAGetInfo(dac, &dim, &N, &M, 0, &n, &m, 0, &dof, &s, 0, 0, 0, &st));
1231e00437b9SBarry Smith   PetscCheck(dim == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "This function can only refine 2D DMDAs");
1232c4762a1bSJed Brown 
1233c4762a1bSJed Brown   /* Creates a 3D DMDA with the same map-plane layout as the 2D one, with contiguous columns */
12349566063dSJacob Faibussowitsch   PetscCall(DMDACreate3d(PetscObjectComm((PetscObject)dac), DM_BOUNDARY_NONE, DM_BOUNDARY_PERIODIC, DM_BOUNDARY_PERIODIC, st, thi->zlevels, N, M, 1, n, m, dof, s, NULL, NULL, NULL, &daf));
12359566063dSJacob Faibussowitsch   PetscCall(DMSetUp(daf));
1236c4762a1bSJed Brown 
1237c4762a1bSJed Brown   daf->ops->creatematrix        = dac->ops->creatematrix;
1238c4762a1bSJed Brown   daf->ops->createinterpolation = dac->ops->createinterpolation;
1239c4762a1bSJed Brown   daf->ops->getcoloring         = dac->ops->getcoloring;
1240c4762a1bSJed Brown   ddf                           = (DM_DA *)daf->data;
1241c4762a1bSJed Brown   ddc                           = (DM_DA *)dac->data;
1242c4762a1bSJed Brown   ddf->interptype               = ddc->interptype;
1243c4762a1bSJed Brown 
12449566063dSJacob Faibussowitsch   PetscCall(DMDASetFieldName(daf, 0, "x-velocity"));
12459566063dSJacob Faibussowitsch   PetscCall(DMDASetFieldName(daf, 1, "y-velocity"));
1246c4762a1bSJed Brown 
1247c4762a1bSJed Brown   hierarchy[nlevels - 1] = daf;
1248c4762a1bSJed Brown   PetscFunctionReturn(0);
1249c4762a1bSJed Brown }
1250c4762a1bSJed Brown 
12519371c9d4SSatish Balay static PetscErrorCode DMCreateInterpolation_DA_THI(DM dac, DM daf, Mat *A, Vec *scale) {
1252c4762a1bSJed Brown   PetscInt dim;
1253c4762a1bSJed Brown 
1254c4762a1bSJed Brown   PetscFunctionBeginUser;
1255c4762a1bSJed Brown   PetscValidHeaderSpecific(dac, DM_CLASSID, 1);
1256c4762a1bSJed Brown   PetscValidHeaderSpecific(daf, DM_CLASSID, 2);
1257c4762a1bSJed Brown   PetscValidPointer(A, 3);
1258c4762a1bSJed Brown   if (scale) PetscValidPointer(scale, 4);
12599566063dSJacob Faibussowitsch   PetscCall(DMDAGetInfo(daf, &dim, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0));
1260c4762a1bSJed Brown   if (dim == 2) {
1261c4762a1bSJed Brown     /* We are in the 2D problem and use normal DMDA interpolation */
12629566063dSJacob Faibussowitsch     PetscCall(DMCreateInterpolation(dac, daf, A, scale));
1263c4762a1bSJed Brown   } else {
1264c4762a1bSJed Brown     PetscInt i, j, k, xs, ys, zs, xm, ym, zm, mx, my, mz, rstart, cstart;
1265c4762a1bSJed Brown     Mat      B;
1266c4762a1bSJed Brown 
12679566063dSJacob Faibussowitsch     PetscCall(DMDAGetInfo(daf, 0, &mz, &my, &mx, 0, 0, 0, 0, 0, 0, 0, 0, 0));
12689566063dSJacob Faibussowitsch     PetscCall(DMDAGetCorners(daf, &zs, &ys, &xs, &zm, &ym, &xm));
126928b400f6SJacob Faibussowitsch     PetscCheck(!zs, PETSC_COMM_SELF, PETSC_ERR_PLIB, "unexpected");
12709566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)daf), &B));
12719566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, xm * ym * zm, xm * ym, mx * my * mz, mx * my));
1272c4762a1bSJed Brown 
12739566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATAIJ));
12749566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(B, 1, NULL));
12759566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 1, NULL, 0, NULL));
12769566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(B, &rstart, NULL));
12779566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRangeColumn(B, &cstart, NULL));
1278c4762a1bSJed Brown     for (i = xs; i < xs + xm; i++) {
1279c4762a1bSJed Brown       for (j = ys; j < ys + ym; j++) {
1280c4762a1bSJed Brown         for (k = zs; k < zs + zm; k++) {
1281c4762a1bSJed Brown           PetscInt    i2 = i * ym + j, i3 = i2 * zm + k;
1282c4762a1bSJed Brown           PetscScalar val = ((k == 0 || k == mz - 1) ? 0.5 : 1.) / (mz - 1.); /* Integration using trapezoid rule */
12839566063dSJacob Faibussowitsch           PetscCall(MatSetValue(B, cstart + i3, rstart + i2, val, INSERT_VALUES));
1284c4762a1bSJed Brown         }
1285c4762a1bSJed Brown       }
1286c4762a1bSJed Brown     }
12879566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
12889566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
12899566063dSJacob Faibussowitsch     PetscCall(MatCreateMAIJ(B, sizeof(Node) / sizeof(PetscScalar), A));
12909566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&B));
1291c4762a1bSJed Brown   }
1292c4762a1bSJed Brown   PetscFunctionReturn(0);
1293c4762a1bSJed Brown }
1294c4762a1bSJed Brown 
12959371c9d4SSatish Balay static PetscErrorCode DMCreateMatrix_THI_Tridiagonal(DM da, Mat *J) {
1296c4762a1bSJed Brown   Mat                    A;
1297c4762a1bSJed Brown   PetscInt               xm, ym, zm, dim, dof = 2, starts[3], dims[3];
1298c4762a1bSJed Brown   ISLocalToGlobalMapping ltog;
1299c4762a1bSJed Brown 
1300c4762a1bSJed Brown   PetscFunctionBeginUser;
13019566063dSJacob Faibussowitsch   PetscCall(DMDAGetInfo(da, &dim, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0));
1302e00437b9SBarry Smith   PetscCheck(dim == 3, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Expected DMDA to be 3D");
13039566063dSJacob Faibussowitsch   PetscCall(DMDAGetCorners(da, 0, 0, 0, &zm, &ym, &xm));
13049566063dSJacob Faibussowitsch   PetscCall(DMGetLocalToGlobalMapping(da, &ltog));
13059566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)da), &A));
13069566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(A, dof * xm * ym * zm, dof * xm * ym * zm, PETSC_DETERMINE, PETSC_DETERMINE));
13079566063dSJacob Faibussowitsch   PetscCall(MatSetType(A, da->mattype));
13089566063dSJacob Faibussowitsch   PetscCall(MatSetFromOptions(A));
13099566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(A, 3 * 2, NULL));
13109566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(A, 3 * 2, NULL, 0, NULL));
13119566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(A, 2, 3, NULL));
13129566063dSJacob Faibussowitsch   PetscCall(MatMPIBAIJSetPreallocation(A, 2, 3, NULL, 0, NULL));
13139566063dSJacob Faibussowitsch   PetscCall(MatSeqSBAIJSetPreallocation(A, 2, 2, NULL));
13149566063dSJacob Faibussowitsch   PetscCall(MatMPISBAIJSetPreallocation(A, 2, 2, NULL, 0, NULL));
13159566063dSJacob Faibussowitsch   PetscCall(MatSetLocalToGlobalMapping(A, ltog, ltog));
13169566063dSJacob Faibussowitsch   PetscCall(DMDAGetGhostCorners(da, &starts[0], &starts[1], &starts[2], &dims[0], &dims[1], &dims[2]));
13179566063dSJacob Faibussowitsch   PetscCall(MatSetStencil(A, dim, dims, starts, dof));
1318c4762a1bSJed Brown   *J = A;
1319c4762a1bSJed Brown   PetscFunctionReturn(0);
1320c4762a1bSJed Brown }
1321c4762a1bSJed Brown 
13229371c9d4SSatish Balay static PetscErrorCode THIDAVecView_VTK_XML(THI thi, DM da, Vec X, const char filename[]) {
1323c4762a1bSJed Brown   const PetscInt     dof   = 2;
1324c4762a1bSJed Brown   Units              units = thi->units;
1325c4762a1bSJed Brown   MPI_Comm           comm;
1326c4762a1bSJed Brown   PetscViewer        viewer;
1327c4762a1bSJed Brown   PetscMPIInt        rank, size, tag, nn, nmax;
1328c4762a1bSJed Brown   PetscInt           mx, my, mz, r, range[6];
1329c4762a1bSJed Brown   const PetscScalar *x;
1330c4762a1bSJed Brown 
1331c4762a1bSJed Brown   PetscFunctionBeginUser;
13329566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)thi, &comm));
13339566063dSJacob Faibussowitsch   PetscCall(DMDAGetInfo(da, 0, &mz, &my, &mx, 0, 0, 0, 0, 0, 0, 0, 0, 0));
13349566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
13359566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
13369566063dSJacob Faibussowitsch   PetscCall(PetscViewerASCIIOpen(comm, filename, &viewer));
13379566063dSJacob Faibussowitsch   PetscCall(PetscViewerASCIIPrintf(viewer, "<VTKFile type=\"StructuredGrid\" version=\"0.1\" byte_order=\"LittleEndian\">\n"));
133863a3b9bcSJacob Faibussowitsch   PetscCall(PetscViewerASCIIPrintf(viewer, "  <StructuredGrid WholeExtent=\"%d %" PetscInt_FMT " %d %" PetscInt_FMT " %d %" PetscInt_FMT "\">\n", 0, mz - 1, 0, my - 1, 0, mx - 1));
1339c4762a1bSJed Brown 
13409566063dSJacob Faibussowitsch   PetscCall(DMDAGetCorners(da, range, range + 1, range + 2, range + 3, range + 4, range + 5));
13419566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(range[3] * range[4] * range[5] * dof, &nn));
13429566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Reduce(&nn, &nmax, 1, MPI_INT, MPI_MAX, 0, comm));
1343c4762a1bSJed Brown   tag = ((PetscObject)viewer)->tag;
13449566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(X, &x));
1345dd400576SPatrick Sanan   if (rank == 0) {
1346c4762a1bSJed Brown     PetscScalar *array;
13479566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nmax, &array));
1348c4762a1bSJed Brown     for (r = 0; r < size; r++) {
1349c4762a1bSJed Brown       PetscInt           i, j, k, xs, xm, ys, ym, zs, zm;
1350c4762a1bSJed Brown       const PetscScalar *ptr;
1351c4762a1bSJed Brown       MPI_Status         status;
1352*48a46eb9SPierre Jolivet       if (r) PetscCallMPI(MPI_Recv(range, 6, MPIU_INT, r, tag, comm, MPI_STATUS_IGNORE));
13539371c9d4SSatish Balay       zs = range[0];
13549371c9d4SSatish Balay       ys = range[1];
13559371c9d4SSatish Balay       xs = range[2];
13569371c9d4SSatish Balay       zm = range[3];
13579371c9d4SSatish Balay       ym = range[4];
13589371c9d4SSatish Balay       xm = range[5];
1359e00437b9SBarry Smith       PetscCheck(xm * ym * zm * dof <= nmax, PETSC_COMM_SELF, PETSC_ERR_PLIB, "should not happen");
1360c4762a1bSJed Brown       if (r) {
13619566063dSJacob Faibussowitsch         PetscCallMPI(MPI_Recv(array, nmax, MPIU_SCALAR, r, tag, comm, &status));
13629566063dSJacob Faibussowitsch         PetscCallMPI(MPI_Get_count(&status, MPIU_SCALAR, &nn));
1363e00437b9SBarry Smith         PetscCheck(nn == xm * ym * zm * dof, PETSC_COMM_SELF, PETSC_ERR_PLIB, "should not happen");
1364c4762a1bSJed Brown         ptr = array;
1365c4762a1bSJed Brown       } else ptr = x;
136663a3b9bcSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "    <Piece Extent=\"%" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT "\">\n", zs, zs + zm - 1, ys, ys + ym - 1, xs, xs + xm - 1));
1367c4762a1bSJed Brown 
13689566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "      <Points>\n"));
13699566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "        <DataArray type=\"Float32\" NumberOfComponents=\"3\" format=\"ascii\">\n"));
1370c4762a1bSJed Brown       for (i = xs; i < xs + xm; i++) {
1371c4762a1bSJed Brown         for (j = ys; j < ys + ym; j++) {
1372c4762a1bSJed Brown           for (k = zs; k < zs + zm; k++) {
1373c4762a1bSJed Brown             PrmNode   p;
1374c4762a1bSJed Brown             PetscReal xx = thi->Lx * i / mx, yy = thi->Ly * j / my, zz;
1375c4762a1bSJed Brown             thi->initialize(thi, xx, yy, &p);
1376c4762a1bSJed Brown             zz = PetscRealPart(p.b) + PetscRealPart(p.h) * k / (mz - 1);
13779566063dSJacob Faibussowitsch             PetscCall(PetscViewerASCIIPrintf(viewer, "%f %f %f\n", (double)xx, (double)yy, (double)zz));
1378c4762a1bSJed Brown           }
1379c4762a1bSJed Brown         }
1380c4762a1bSJed Brown       }
13819566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "        </DataArray>\n"));
13829566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "      </Points>\n"));
1383c4762a1bSJed Brown 
13849566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "      <PointData>\n"));
13859566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "        <DataArray type=\"Float32\" Name=\"velocity\" NumberOfComponents=\"3\" format=\"ascii\">\n"));
1386*48a46eb9SPierre Jolivet       for (i = 0; i < nn; i += dof) PetscCall(PetscViewerASCIIPrintf(viewer, "%f %f %f\n", (double)(PetscRealPart(ptr[i]) * units->year / units->meter), (double)(PetscRealPart(ptr[i + 1]) * units->year / units->meter), 0.0));
13879566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "        </DataArray>\n"));
1388c4762a1bSJed Brown 
13899566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "        <DataArray type=\"Int32\" Name=\"rank\" NumberOfComponents=\"1\" format=\"ascii\">\n"));
1390*48a46eb9SPierre Jolivet       for (i = 0; i < nn; i += dof) PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT "\n", r));
13919566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "        </DataArray>\n"));
13929566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "      </PointData>\n"));
1393c4762a1bSJed Brown 
13949566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "    </Piece>\n"));
1395c4762a1bSJed Brown     }
13969566063dSJacob Faibussowitsch     PetscCall(PetscFree(array));
1397c4762a1bSJed Brown   } else {
13989566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Send(range, 6, MPIU_INT, 0, tag, comm));
13999566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Send((PetscScalar *)x, nn, MPIU_SCALAR, 0, tag, comm));
1400c4762a1bSJed Brown   }
14019566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(X, &x));
14029566063dSJacob Faibussowitsch   PetscCall(PetscViewerASCIIPrintf(viewer, "  </StructuredGrid>\n"));
14039566063dSJacob Faibussowitsch   PetscCall(PetscViewerASCIIPrintf(viewer, "</VTKFile>\n"));
14049566063dSJacob Faibussowitsch   PetscCall(PetscViewerDestroy(&viewer));
1405c4762a1bSJed Brown   PetscFunctionReturn(0);
1406c4762a1bSJed Brown }
1407c4762a1bSJed Brown 
14089371c9d4SSatish Balay int main(int argc, char *argv[]) {
1409c4762a1bSJed Brown   MPI_Comm comm;
1410c4762a1bSJed Brown   THI      thi;
1411c4762a1bSJed Brown   DM       da;
1412c4762a1bSJed Brown   SNES     snes;
1413c4762a1bSJed Brown 
1414327415f7SBarry Smith   PetscFunctionBeginUser;
14159566063dSJacob Faibussowitsch   PetscCall(PetscInitialize(&argc, &argv, 0, help));
1416c4762a1bSJed Brown   comm = PETSC_COMM_WORLD;
1417c4762a1bSJed Brown 
14189566063dSJacob Faibussowitsch   PetscCall(THICreate(comm, &thi));
1419c4762a1bSJed Brown   {
1420c4762a1bSJed Brown     PetscInt M = 3, N = 3, P = 2;
1421d0609cedSBarry Smith     PetscOptionsBegin(comm, NULL, "Grid resolution options", "");
1422c4762a1bSJed Brown     {
14239566063dSJacob Faibussowitsch       PetscCall(PetscOptionsInt("-M", "Number of elements in x-direction on coarse level", "", M, &M, NULL));
1424c4762a1bSJed Brown       N = M;
14259566063dSJacob Faibussowitsch       PetscCall(PetscOptionsInt("-N", "Number of elements in y-direction on coarse level (if different from M)", "", N, &N, NULL));
1426c4762a1bSJed Brown       if (thi->coarse2d) {
14279566063dSJacob Faibussowitsch         PetscCall(PetscOptionsInt("-zlevels", "Number of elements in z-direction on fine level", "", thi->zlevels, &thi->zlevels, NULL));
1428c4762a1bSJed Brown       } else {
14299566063dSJacob Faibussowitsch         PetscCall(PetscOptionsInt("-P", "Number of elements in z-direction on coarse level", "", P, &P, NULL));
1430c4762a1bSJed Brown       }
1431c4762a1bSJed Brown     }
1432d0609cedSBarry Smith     PetscOptionsEnd();
1433c4762a1bSJed Brown     if (thi->coarse2d) {
14349566063dSJacob Faibussowitsch       PetscCall(DMDACreate2d(comm, DM_BOUNDARY_PERIODIC, DM_BOUNDARY_PERIODIC, DMDA_STENCIL_BOX, N, M, PETSC_DETERMINE, PETSC_DETERMINE, sizeof(Node) / sizeof(PetscScalar), 1, 0, 0, &da));
14359566063dSJacob Faibussowitsch       PetscCall(DMSetFromOptions(da));
14369566063dSJacob Faibussowitsch       PetscCall(DMSetUp(da));
1437c4762a1bSJed Brown       da->ops->refinehierarchy     = DMRefineHierarchy_THI;
1438c4762a1bSJed Brown       da->ops->createinterpolation = DMCreateInterpolation_DA_THI;
1439c4762a1bSJed Brown 
14409566063dSJacob Faibussowitsch       PetscCall(PetscObjectCompose((PetscObject)da, "THI", (PetscObject)thi));
1441c4762a1bSJed Brown     } else {
14429566063dSJacob Faibussowitsch       PetscCall(DMDACreate3d(comm, DM_BOUNDARY_NONE, DM_BOUNDARY_PERIODIC, DM_BOUNDARY_PERIODIC, DMDA_STENCIL_BOX, P, N, M, 1, PETSC_DETERMINE, PETSC_DETERMINE, sizeof(Node) / sizeof(PetscScalar), 1, 0, 0, 0, &da));
14439566063dSJacob Faibussowitsch       PetscCall(DMSetFromOptions(da));
14449566063dSJacob Faibussowitsch       PetscCall(DMSetUp(da));
1445c4762a1bSJed Brown     }
14469566063dSJacob Faibussowitsch     PetscCall(DMDASetFieldName(da, 0, "x-velocity"));
14479566063dSJacob Faibussowitsch     PetscCall(DMDASetFieldName(da, 1, "y-velocity"));
1448c4762a1bSJed Brown   }
14499566063dSJacob Faibussowitsch   PetscCall(THISetUpDM(thi, da));
1450c4762a1bSJed Brown   if (thi->tridiagonal) da->ops->creatematrix = DMCreateMatrix_THI_Tridiagonal;
1451c4762a1bSJed Brown 
1452c4762a1bSJed Brown   { /* Set the fine level matrix type if -da_refine */
1453c4762a1bSJed Brown     PetscInt rlevel, clevel;
14549566063dSJacob Faibussowitsch     PetscCall(DMGetRefineLevel(da, &rlevel));
14559566063dSJacob Faibussowitsch     PetscCall(DMGetCoarsenLevel(da, &clevel));
14569566063dSJacob Faibussowitsch     if (rlevel - clevel > 0) PetscCall(DMSetMatType(da, thi->mattype));
1457c4762a1bSJed Brown   }
1458c4762a1bSJed Brown 
14599566063dSJacob Faibussowitsch   PetscCall(DMDASNESSetFunctionLocal(da, ADD_VALUES, (DMDASNESFunction)THIFunctionLocal, thi));
1460c4762a1bSJed Brown   if (thi->tridiagonal) {
14619566063dSJacob Faibussowitsch     PetscCall(DMDASNESSetJacobianLocal(da, (DMDASNESJacobian)THIJacobianLocal_3D_Tridiagonal, thi));
1462c4762a1bSJed Brown   } else {
14639566063dSJacob Faibussowitsch     PetscCall(DMDASNESSetJacobianLocal(da, (DMDASNESJacobian)THIJacobianLocal_3D_Full, thi));
1464c4762a1bSJed Brown   }
14659566063dSJacob Faibussowitsch   PetscCall(DMCoarsenHookAdd(da, DMCoarsenHook_THI, NULL, thi));
14669566063dSJacob Faibussowitsch   PetscCall(DMRefineHookAdd(da, DMRefineHook_THI, NULL, thi));
1467c4762a1bSJed Brown 
14689566063dSJacob Faibussowitsch   PetscCall(DMSetApplicationContext(da, thi));
1469c4762a1bSJed Brown 
14709566063dSJacob Faibussowitsch   PetscCall(SNESCreate(comm, &snes));
14719566063dSJacob Faibussowitsch   PetscCall(SNESSetDM(snes, da));
14729566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&da));
14739566063dSJacob Faibussowitsch   PetscCall(SNESSetComputeInitialGuess(snes, THIInitial, NULL));
14749566063dSJacob Faibussowitsch   PetscCall(SNESSetFromOptions(snes));
1475c4762a1bSJed Brown 
14769566063dSJacob Faibussowitsch   PetscCall(SNESSolve(snes, NULL, NULL));
1477c4762a1bSJed Brown 
14789566063dSJacob Faibussowitsch   PetscCall(THISolveStatistics(thi, snes, 0, "Full"));
1479c4762a1bSJed Brown 
1480c4762a1bSJed Brown   {
1481c4762a1bSJed Brown     PetscBool flg;
1482c4762a1bSJed Brown     char      filename[PETSC_MAX_PATH_LEN] = "";
14839566063dSJacob Faibussowitsch     PetscCall(PetscOptionsGetString(NULL, NULL, "-o", filename, sizeof(filename), &flg));
1484c4762a1bSJed Brown     if (flg) {
1485c4762a1bSJed Brown       Vec X;
1486c4762a1bSJed Brown       DM  dm;
14879566063dSJacob Faibussowitsch       PetscCall(SNESGetSolution(snes, &X));
14889566063dSJacob Faibussowitsch       PetscCall(SNESGetDM(snes, &dm));
14899566063dSJacob Faibussowitsch       PetscCall(THIDAVecView_VTK_XML(thi, dm, X, filename));
1490c4762a1bSJed Brown     }
1491c4762a1bSJed Brown   }
1492c4762a1bSJed Brown 
14939566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&da));
14949566063dSJacob Faibussowitsch   PetscCall(SNESDestroy(&snes));
14959566063dSJacob Faibussowitsch   PetscCall(THIDestroy(&thi));
14969566063dSJacob Faibussowitsch   PetscCall(PetscFinalize());
1497b122ec5aSJacob Faibussowitsch   return 0;
1498c4762a1bSJed Brown }
1499c4762a1bSJed Brown 
1500c4762a1bSJed Brown /*TEST
1501c4762a1bSJed Brown 
1502c4762a1bSJed Brown    build:
1503f56ea12dSJed Brown       requires: !single
1504c4762a1bSJed Brown 
1505c4762a1bSJed Brown    test:
1506c4762a1bSJed Brown       args: -M 6 -P 4 -da_refine 1 -snes_monitor_short -snes_converged_reason -ksp_monitor_short -ksp_converged_reason -thi_mat_type sbaij -ksp_type fgmres -pc_type mg -pc_mg_type full -mg_levels_ksp_type gmres -mg_levels_ksp_max_it 1 -mg_levels_pc_type icc
1507c4762a1bSJed Brown 
1508c4762a1bSJed Brown    test:
1509c4762a1bSJed Brown       suffix: 2
1510c4762a1bSJed Brown       nsize: 2
1511c4762a1bSJed Brown       args: -M 6 -P 4 -thi_hom z -snes_monitor_short -snes_converged_reason -ksp_monitor_short -ksp_converged_reason -thi_mat_type sbaij -ksp_type fgmres -pc_type mg -pc_mg_type full -mg_levels_ksp_type gmres -mg_levels_ksp_max_it 1 -mg_levels_pc_type asm -mg_levels_pc_asm_blocks 6 -mg_levels_0_pc_type redundant -snes_grid_sequence 1 -mat_partitioning_type current -ksp_atol -1
1512c4762a1bSJed Brown 
1513c4762a1bSJed Brown    test:
1514c4762a1bSJed Brown       suffix: 3
1515c4762a1bSJed Brown       nsize: 3
1516c4762a1bSJed Brown       args: -M 7 -P 4 -thi_hom z -da_refine 1 -snes_monitor_short -snes_converged_reason -ksp_monitor_short -ksp_converged_reason -thi_mat_type baij -ksp_type fgmres -pc_type mg -pc_mg_type full -mg_levels_pc_asm_type restrict -mg_levels_pc_type asm -mg_levels_pc_asm_blocks 9 -mg_levels_ksp_type gmres -mg_levels_ksp_max_it 1 -mat_partitioning_type current
1517c4762a1bSJed Brown 
1518c4762a1bSJed Brown    test:
1519c4762a1bSJed Brown       suffix: 4
1520c4762a1bSJed Brown       nsize: 6
1521c4762a1bSJed Brown       args: -M 4 -P 2 -da_refine_hierarchy_x 1,1,3 -da_refine_hierarchy_y 2,2,1 -da_refine_hierarchy_z 2,2,1 -snes_grid_sequence 3 -ksp_converged_reason -ksp_type fgmres -ksp_rtol 1e-2 -pc_type mg -mg_levels_ksp_type gmres -mg_levels_ksp_max_it 1 -mg_levels_pc_type bjacobi -mg_levels_1_sub_pc_type cholesky -pc_mg_type multiplicative -snes_converged_reason -snes_stol 1e-12 -thi_L 80e3 -thi_alpha 0.05 -thi_friction_m 1 -thi_hom x -snes_view -mg_levels_0_pc_type redundant -mg_levels_0_ksp_type preonly -ksp_atol -1
1522c4762a1bSJed Brown 
1523c4762a1bSJed Brown    test:
1524c4762a1bSJed Brown       suffix: 5
1525c4762a1bSJed Brown       nsize: 6
1526c4762a1bSJed Brown       args: -M 12 -P 5 -snes_monitor_short -ksp_converged_reason -pc_type asm -pc_asm_type restrict -dm_mat_type {{aij baij sbaij}}
1527c4762a1bSJed Brown 
1528c4762a1bSJed Brown TEST*/
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