1c4762a1bSJed Brown static const char help[] = "Toy hydrostatic ice flow with multigrid in 3D.\n\ 2c4762a1bSJed Brown \n\ 3c4762a1bSJed Brown Solves the hydrostatic (aka Blatter/Pattyn/First Order) equations for ice sheet flow\n\ 4c4762a1bSJed Brown using multigrid. The ice uses a power-law rheology with \"Glen\" exponent 3 (corresponds\n\ 5c4762a1bSJed Brown to p=4/3 in a p-Laplacian). The focus is on ISMIP-HOM experiments which assume periodic\n\ 6c4762a1bSJed Brown boundary conditions in the x- and y-directions.\n\ 7c4762a1bSJed Brown \n\ 8c4762a1bSJed Brown Equations are rescaled so that the domain size and solution are O(1), details of this scaling\n\ 9c4762a1bSJed Brown can be controlled by the options -units_meter, -units_second, and -units_kilogram.\n\ 10c4762a1bSJed Brown \n\ 11c4762a1bSJed Brown A VTK StructuredGrid output file can be written using the option -o filename.vts\n\ 12c4762a1bSJed Brown \n\n"; 13c4762a1bSJed Brown 14c4762a1bSJed Brown /* 15c4762a1bSJed Brown The equations for horizontal velocity (u,v) are 16c4762a1bSJed Brown 17c4762a1bSJed Brown - [eta (4 u_x + 2 v_y)]_x - [eta (u_y + v_x)]_y - [eta u_z]_z + rho g s_x = 0 18c4762a1bSJed Brown - [eta (4 v_y + 2 u_x)]_y - [eta (u_y + v_x)]_x - [eta v_z]_z + rho g s_y = 0 19c4762a1bSJed Brown 20c4762a1bSJed Brown where 21c4762a1bSJed Brown 22c4762a1bSJed Brown eta = B/2 (epsilon + gamma)^((p-2)/2) 23c4762a1bSJed Brown 24c4762a1bSJed Brown is the nonlinear effective viscosity with regularization epsilon and hardness parameter B, 25c4762a1bSJed Brown written in terms of the second invariant 26c4762a1bSJed Brown 27c4762a1bSJed Brown gamma = u_x^2 + v_y^2 + u_x v_y + (1/4) (u_y + v_x)^2 + (1/4) u_z^2 + (1/4) v_z^2 28c4762a1bSJed Brown 29c4762a1bSJed Brown The surface boundary conditions are the natural conditions. The basal boundary conditions 30c4762a1bSJed Brown are either no-slip, or Navier (linear) slip with spatially variant friction coefficient beta^2. 31c4762a1bSJed Brown 32c4762a1bSJed Brown In the code, the equations for (u,v) are multiplied through by 1/(rho g) so that residuals are O(1). 33c4762a1bSJed Brown 34c4762a1bSJed Brown The discretization is Q1 finite elements, managed by a DMDA. The grid is never distorted in the 35c4762a1bSJed Brown map (x,y) plane, but the bed and surface may be bumpy. This is handled as usual in FEM, through 36c4762a1bSJed Brown the Jacobian of the coordinate transformation from a reference element to the physical element. 37c4762a1bSJed Brown 38c4762a1bSJed Brown Since ice-flow is tightly coupled in the z-direction (within columns), the DMDA is managed 39c4762a1bSJed Brown specially so that columns are never distributed, and are always contiguous in memory. 40c4762a1bSJed Brown This amounts to reversing the meaning of X,Y,Z compared to the DMDA's internal interpretation, 41c4762a1bSJed Brown and then indexing as vec[i][j][k]. The exotic coarse spaces require 2D DMDAs which are made to 42c4762a1bSJed Brown use compatible domain decomposition relative to the 3D DMDAs. 43c4762a1bSJed Brown 44c4762a1bSJed Brown There are two compile-time options: 45c4762a1bSJed Brown 46c4762a1bSJed Brown NO_SSE2: 47c4762a1bSJed Brown If the host supports SSE2, we use integration code that has been vectorized with SSE2 48c4762a1bSJed Brown intrinsics, unless this macro is defined. The intrinsics speed up integration by about 49c4762a1bSJed Brown 30% on my architecture (P8700, gcc-4.5 snapshot). 50c4762a1bSJed Brown 51c4762a1bSJed Brown COMPUTE_LOWER_TRIANGULAR: 52c4762a1bSJed Brown The element matrices we assemble are lower-triangular so it is not necessary to compute 53c4762a1bSJed Brown all entries explicitly. If this macro is defined, the lower-triangular entries are 54c4762a1bSJed Brown computed explicitly. 55c4762a1bSJed Brown 56c4762a1bSJed Brown */ 57c4762a1bSJed Brown 58c4762a1bSJed Brown #if defined(PETSC_APPLE_FRAMEWORK) 59c4762a1bSJed Brown #import <PETSc/petscsnes.h> 60c4762a1bSJed Brown #import <PETSc/petsc/private/dmdaimpl.h> /* There is not yet a public interface to manipulate dm->ops */ 61c4762a1bSJed Brown #else 62c4762a1bSJed Brown 63c4762a1bSJed Brown #include <petscsnes.h> 64c4762a1bSJed Brown #include <petsc/private/dmdaimpl.h> /* There is not yet a public interface to manipulate dm->ops */ 65c4762a1bSJed Brown #endif 66c4762a1bSJed Brown #include <ctype.h> /* toupper() */ 67c4762a1bSJed Brown 68c4762a1bSJed Brown #if defined(__cplusplus) || defined(PETSC_HAVE_WINDOWS_COMPILERS) || defined(__PGI) 69c4762a1bSJed Brown /* c++ cannot handle [_restrict_] notation like C does */ 70c4762a1bSJed Brown #undef PETSC_RESTRICT 71c4762a1bSJed Brown #define PETSC_RESTRICT 72c4762a1bSJed Brown #endif 73c4762a1bSJed Brown 74c4762a1bSJed Brown #if defined __SSE2__ 75c4762a1bSJed Brown #include <emmintrin.h> 76c4762a1bSJed Brown #endif 77c4762a1bSJed Brown 78c4762a1bSJed Brown /* The SSE2 kernels are only for PetscScalar=double on architectures that support it */ 799371c9d4SSatish Balay #if !defined NO_SSE2 && !defined PETSC_USE_COMPLEX && !defined PETSC_USE_REAL_SINGLE && !defined PETSC_USE_REAL___FLOAT128 && !defined PETSC_USE_REAL___FP16 && defined __SSE2__ 80c4762a1bSJed Brown #define USE_SSE2_KERNELS 1 81c4762a1bSJed Brown #else 82c4762a1bSJed Brown #define USE_SSE2_KERNELS 0 83c4762a1bSJed Brown #endif 84c4762a1bSJed Brown 85c4762a1bSJed Brown static PetscClassId THI_CLASSID; 86c4762a1bSJed Brown 879371c9d4SSatish Balay typedef enum { 889371c9d4SSatish Balay QUAD_GAUSS, 899371c9d4SSatish Balay QUAD_LOBATTO 909371c9d4SSatish Balay } QuadratureType; 91c4762a1bSJed Brown static const char *QuadratureTypes[] = {"gauss", "lobatto", "QuadratureType", "QUAD_", 0}; 92c4762a1bSJed Brown PETSC_UNUSED static const PetscReal HexQWeights[8] = {1, 1, 1, 1, 1, 1, 1, 1}; 93c4762a1bSJed Brown PETSC_UNUSED static const PetscReal HexQNodes[] = {-0.57735026918962573, 0.57735026918962573}; 94c4762a1bSJed Brown #define G 0.57735026918962573 95c4762a1bSJed Brown #define H (0.5 * (1. + G)) 96c4762a1bSJed Brown #define L (0.5 * (1. - G)) 97c4762a1bSJed Brown #define M (-0.5) 98c4762a1bSJed Brown #define P (0.5) 99c4762a1bSJed Brown /* Special quadrature: Lobatto in horizontal, Gauss in vertical */ 1009371c9d4SSatish Balay static const PetscReal HexQInterp_Lobatto[8][8] = { 1019371c9d4SSatish Balay {H, 0, 0, 0, L, 0, 0, 0}, 102c4762a1bSJed Brown {0, H, 0, 0, 0, L, 0, 0}, 103c4762a1bSJed Brown {0, 0, H, 0, 0, 0, L, 0}, 104c4762a1bSJed Brown {0, 0, 0, H, 0, 0, 0, L}, 105c4762a1bSJed Brown {L, 0, 0, 0, H, 0, 0, 0}, 106c4762a1bSJed Brown {0, L, 0, 0, 0, H, 0, 0}, 107c4762a1bSJed Brown {0, 0, L, 0, 0, 0, H, 0}, 1089371c9d4SSatish Balay {0, 0, 0, L, 0, 0, 0, H} 1099371c9d4SSatish Balay }; 110c4762a1bSJed Brown static const PetscReal HexQDeriv_Lobatto[8][8][3] = { 111c4762a1bSJed Brown {{M * H, M *H, M}, {P * H, 0, 0}, {0, 0, 0}, {0, P *H, 0}, {M * L, M *L, P}, {P * L, 0, 0}, {0, 0, 0}, {0, P *L, 0} }, 112c4762a1bSJed Brown {{M * H, 0, 0}, {P * H, M *H, M}, {0, P *H, 0}, {0, 0, 0}, {M * L, 0, 0}, {P * L, M *L, P}, {0, P *L, 0}, {0, 0, 0} }, 113c4762a1bSJed Brown {{0, 0, 0}, {0, M *H, 0}, {P * H, P *H, M}, {M * H, 0, 0}, {0, 0, 0}, {0, M *L, 0}, {P * L, P *L, P}, {M * L, 0, 0} }, 114c4762a1bSJed Brown {{0, M *H, 0}, {0, 0, 0}, {P * H, 0, 0}, {M * H, P *H, M}, {0, M *L, 0}, {0, 0, 0}, {P * L, 0, 0}, {M * L, P *L, P}}, 115c4762a1bSJed Brown {{M * L, M *L, M}, {P * L, 0, 0}, {0, 0, 0}, {0, P *L, 0}, {M * H, M *H, P}, {P * H, 0, 0}, {0, 0, 0}, {0, P *H, 0} }, 116c4762a1bSJed Brown {{M * L, 0, 0}, {P * L, M *L, M}, {0, P *L, 0}, {0, 0, 0}, {M * H, 0, 0}, {P * H, M *H, P}, {0, P *H, 0}, {0, 0, 0} }, 117c4762a1bSJed Brown {{0, 0, 0}, {0, M *L, 0}, {P * L, P *L, M}, {M * L, 0, 0}, {0, 0, 0}, {0, M *H, 0}, {P * H, P *H, P}, {M * H, 0, 0} }, 1189371c9d4SSatish Balay {{0, M *L, 0}, {0, 0, 0}, {P * L, 0, 0}, {M * L, P *L, M}, {0, M *H, 0}, {0, 0, 0}, {P * H, 0, 0}, {M * H, P *H, P}} 1199371c9d4SSatish Balay }; 120c4762a1bSJed Brown /* Stanndard Gauss */ 1219371c9d4SSatish Balay static const PetscReal HexQInterp_Gauss[8][8] = { 1229371c9d4SSatish Balay {H * H * H, L *H *H, L *L *H, H *L *H, H *H *L, L *H *L, L *L *L, H *L *L}, 123c4762a1bSJed Brown {L * H * H, H *H *H, H *L *H, L *L *H, L *H *L, H *H *L, H *L *L, L *L *L}, 124c4762a1bSJed Brown {L * L * H, H *L *H, H *H *H, L *H *H, L *L *L, H *L *L, H *H *L, L *H *L}, 125c4762a1bSJed Brown {H * L * H, L *L *H, L *H *H, H *H *H, H *L *L, L *L *L, L *H *L, H *H *L}, 126c4762a1bSJed Brown {H * H * L, L *H *L, L *L *L, H *L *L, H *H *H, L *H *H, L *L *H, H *L *H}, 127c4762a1bSJed Brown {L * H * L, H *H *L, H *L *L, L *L *L, L *H *H, H *H *H, H *L *H, L *L *H}, 128c4762a1bSJed Brown {L * L * L, H *L *L, H *H *L, L *H *L, L *L *H, H *L *H, H *H *H, L *H *H}, 1299371c9d4SSatish Balay {H * L * L, L *L *L, L *H *L, H *H *L, H *L *H, L *L *H, L *H *H, H *H *H} 1309371c9d4SSatish Balay }; 131c4762a1bSJed Brown static const PetscReal HexQDeriv_Gauss[8][8][3] = { 132c4762a1bSJed Brown {{M * H * H, H *M *H, H *H *M}, {P * H * H, L *M *H, L *H *M}, {P * L * H, L *P *H, L *L *M}, {M * L * H, H *P *H, H *L *M}, {M * H * L, H *M *L, H *H *P}, {P * H * L, L *M *L, L *H *P}, {P * L * L, L *P *L, L *L *P}, {M * L * L, H *P *L, H *L *P}}, 133c4762a1bSJed Brown {{M * H * H, L *M *H, L *H *M}, {P * H * H, H *M *H, H *H *M}, {P * L * H, H *P *H, H *L *M}, {M * L * H, L *P *H, L *L *M}, {M * H * L, L *M *L, L *H *P}, {P * H * L, H *M *L, H *H *P}, {P * L * L, H *P *L, H *L *P}, {M * L * L, L *P *L, L *L *P}}, 134c4762a1bSJed Brown {{M * L * H, L *M *H, L *L *M}, {P * L * H, H *M *H, H *L *M}, {P * H * H, H *P *H, H *H *M}, {M * H * H, L *P *H, L *H *M}, {M * L * L, L *M *L, L *L *P}, {P * L * L, H *M *L, H *L *P}, {P * H * L, H *P *L, H *H *P}, {M * H * L, L *P *L, L *H *P}}, 135c4762a1bSJed Brown {{M * L * H, H *M *H, H *L *M}, {P * L * H, L *M *H, L *L *M}, {P * H * H, L *P *H, L *H *M}, {M * H * H, H *P *H, H *H *M}, {M * L * L, H *M *L, H *L *P}, {P * L * L, L *M *L, L *L *P}, {P * H * L, L *P *L, L *H *P}, {M * H * L, H *P *L, H *H *P}}, 136c4762a1bSJed Brown {{M * H * L, H *M *L, H *H *M}, {P * H * L, L *M *L, L *H *M}, {P * L * L, L *P *L, L *L *M}, {M * L * L, H *P *L, H *L *M}, {M * H * H, H *M *H, H *H *P}, {P * H * H, L *M *H, L *H *P}, {P * L * H, L *P *H, L *L *P}, {M * L * H, H *P *H, H *L *P}}, 137c4762a1bSJed Brown {{M * H * L, L *M *L, L *H *M}, {P * H * L, H *M *L, H *H *M}, {P * L * L, H *P *L, H *L *M}, {M * L * L, L *P *L, L *L *M}, {M * H * H, L *M *H, L *H *P}, {P * H * H, H *M *H, H *H *P}, {P * L * H, H *P *H, H *L *P}, {M * L * H, L *P *H, L *L *P}}, 138c4762a1bSJed Brown {{M * L * L, L *M *L, L *L *M}, {P * L * L, H *M *L, H *L *M}, {P * H * L, H *P *L, H *H *M}, {M * H * L, L *P *L, L *H *M}, {M * L * H, L *M *H, L *L *P}, {P * L * H, H *M *H, H *L *P}, {P * H * H, H *P *H, H *H *P}, {M * H * H, L *P *H, L *H *P}}, 1399371c9d4SSatish Balay {{M * L * L, H *M *L, H *L *M}, {P * L * L, L *M *L, L *L *M}, {P * H * L, L *P *L, L *H *M}, {M * H * L, H *P *L, H *H *M}, {M * L * H, H *M *H, H *L *P}, {P * L * H, L *M *H, L *L *P}, {P * H * H, L *P *H, L *H *P}, {M * H * H, H *P *H, H *H *P}} 1409371c9d4SSatish Balay }; 141c4762a1bSJed Brown static const PetscReal (*HexQInterp)[8], (*HexQDeriv)[8][3]; 142c4762a1bSJed Brown /* Standard 2x2 Gauss quadrature for the bottom layer. */ 1439371c9d4SSatish Balay static const PetscReal QuadQInterp[4][4] = { 1449371c9d4SSatish Balay {H * H, L *H, L *L, H *L}, 145c4762a1bSJed Brown {L * H, H *H, H *L, L *L}, 146c4762a1bSJed Brown {L * L, H *L, H *H, L *H}, 1479371c9d4SSatish Balay {H * L, L *L, L *H, H *H} 1489371c9d4SSatish Balay }; 149c4762a1bSJed Brown static const PetscReal QuadQDeriv[4][4][2] = { 150c4762a1bSJed Brown {{M * H, M *H}, {P * H, M *L}, {P * L, P *L}, {M * L, P *H}}, 151c4762a1bSJed Brown {{M * H, M *L}, {P * H, M *H}, {P * L, P *H}, {M * L, P *L}}, 152c4762a1bSJed Brown {{M * L, M *L}, {P * L, M *H}, {P * H, P *H}, {M * H, P *L}}, 1539371c9d4SSatish Balay {{M * L, M *H}, {P * L, M *L}, {P * H, P *L}, {M * H, P *H}} 1549371c9d4SSatish Balay }; 155c4762a1bSJed Brown #undef G 156c4762a1bSJed Brown #undef H 157c4762a1bSJed Brown #undef L 158c4762a1bSJed Brown #undef M 159c4762a1bSJed Brown #undef P 160c4762a1bSJed Brown 1619371c9d4SSatish Balay #define HexExtract(x, i, j, k, n) \ 1629371c9d4SSatish Balay do { \ 163c4762a1bSJed Brown (n)[0] = (x)[i][j][k]; \ 164c4762a1bSJed Brown (n)[1] = (x)[i + 1][j][k]; \ 165c4762a1bSJed Brown (n)[2] = (x)[i + 1][j + 1][k]; \ 166c4762a1bSJed Brown (n)[3] = (x)[i][j + 1][k]; \ 167c4762a1bSJed Brown (n)[4] = (x)[i][j][k + 1]; \ 168c4762a1bSJed Brown (n)[5] = (x)[i + 1][j][k + 1]; \ 169c4762a1bSJed Brown (n)[6] = (x)[i + 1][j + 1][k + 1]; \ 170c4762a1bSJed Brown (n)[7] = (x)[i][j + 1][k + 1]; \ 171c4762a1bSJed Brown } while (0) 172c4762a1bSJed Brown 1739371c9d4SSatish Balay #define HexExtractRef(x, i, j, k, n) \ 1749371c9d4SSatish Balay do { \ 175c4762a1bSJed Brown (n)[0] = &(x)[i][j][k]; \ 176c4762a1bSJed Brown (n)[1] = &(x)[i + 1][j][k]; \ 177c4762a1bSJed Brown (n)[2] = &(x)[i + 1][j + 1][k]; \ 178c4762a1bSJed Brown (n)[3] = &(x)[i][j + 1][k]; \ 179c4762a1bSJed Brown (n)[4] = &(x)[i][j][k + 1]; \ 180c4762a1bSJed Brown (n)[5] = &(x)[i + 1][j][k + 1]; \ 181c4762a1bSJed Brown (n)[6] = &(x)[i + 1][j + 1][k + 1]; \ 182c4762a1bSJed Brown (n)[7] = &(x)[i][j + 1][k + 1]; \ 183c4762a1bSJed Brown } while (0) 184c4762a1bSJed Brown 1859371c9d4SSatish Balay #define QuadExtract(x, i, j, n) \ 1869371c9d4SSatish Balay do { \ 187c4762a1bSJed Brown (n)[0] = (x)[i][j]; \ 188c4762a1bSJed Brown (n)[1] = (x)[i + 1][j]; \ 189c4762a1bSJed Brown (n)[2] = (x)[i + 1][j + 1]; \ 190c4762a1bSJed Brown (n)[3] = (x)[i][j + 1]; \ 191c4762a1bSJed Brown } while (0) 192c4762a1bSJed Brown 1939371c9d4SSatish Balay static void HexGrad(const PetscReal dphi[][3], const PetscReal zn[], PetscReal dz[]) { 194c4762a1bSJed Brown PetscInt i; 195c4762a1bSJed Brown dz[0] = dz[1] = dz[2] = 0; 196c4762a1bSJed Brown for (i = 0; i < 8; i++) { 197c4762a1bSJed Brown dz[0] += dphi[i][0] * zn[i]; 198c4762a1bSJed Brown dz[1] += dphi[i][1] * zn[i]; 199c4762a1bSJed Brown dz[2] += dphi[i][2] * zn[i]; 200c4762a1bSJed Brown } 201c4762a1bSJed Brown } 202c4762a1bSJed Brown 2039371c9d4SSatish Balay static void HexComputeGeometry(PetscInt q, PetscReal hx, PetscReal hy, const PetscReal dz[PETSC_RESTRICT], PetscReal phi[PETSC_RESTRICT], PetscReal dphi[PETSC_RESTRICT][3], PetscReal *PETSC_RESTRICT jw) { 2049371c9d4SSatish Balay const PetscReal jac[3][3] = { 2059371c9d4SSatish Balay {hx / 2, 0, 0 }, 2069371c9d4SSatish Balay {0, hy / 2, 0 }, 2079371c9d4SSatish Balay {dz[0], dz[1], dz[2]} 2089371c9d4SSatish Balay }; 2099371c9d4SSatish Balay const PetscReal ijac[3][3] = { 2109371c9d4SSatish Balay {1 / jac[0][0], 0, 0 }, 2119371c9d4SSatish Balay {0, 1 / jac[1][1], 0 }, 2129371c9d4SSatish Balay {-jac[2][0] / (jac[0][0] * jac[2][2]), -jac[2][1] / (jac[1][1] * jac[2][2]), 1 / jac[2][2]} 2139371c9d4SSatish Balay }; 214c4762a1bSJed Brown const PetscReal jdet = jac[0][0] * jac[1][1] * jac[2][2]; 215c4762a1bSJed Brown PetscInt i; 216c4762a1bSJed Brown 217c4762a1bSJed Brown for (i = 0; i < 8; i++) { 218c4762a1bSJed Brown const PetscReal *dphir = HexQDeriv[q][i]; 219c4762a1bSJed Brown phi[i] = HexQInterp[q][i]; 220c4762a1bSJed Brown dphi[i][0] = dphir[0] * ijac[0][0] + dphir[1] * ijac[1][0] + dphir[2] * ijac[2][0]; 221c4762a1bSJed Brown dphi[i][1] = dphir[0] * ijac[0][1] + dphir[1] * ijac[1][1] + dphir[2] * ijac[2][1]; 222c4762a1bSJed Brown dphi[i][2] = dphir[0] * ijac[0][2] + dphir[1] * ijac[1][2] + dphir[2] * ijac[2][2]; 223c4762a1bSJed Brown } 224c4762a1bSJed Brown *jw = 1.0 * jdet; 225c4762a1bSJed Brown } 226c4762a1bSJed Brown 227c4762a1bSJed Brown typedef struct _p_THI *THI; 228c4762a1bSJed Brown typedef struct _n_Units *Units; 229c4762a1bSJed Brown 230c4762a1bSJed Brown typedef struct { 231c4762a1bSJed Brown PetscScalar u, v; 232c4762a1bSJed Brown } Node; 233c4762a1bSJed Brown 234c4762a1bSJed Brown typedef struct { 235c4762a1bSJed Brown PetscScalar b; /* bed */ 236c4762a1bSJed Brown PetscScalar h; /* thickness */ 237c4762a1bSJed Brown PetscScalar beta2; /* friction */ 238c4762a1bSJed Brown } PrmNode; 239c4762a1bSJed Brown 240c4762a1bSJed Brown typedef struct { 241c4762a1bSJed Brown PetscReal min, max, cmin, cmax; 242c4762a1bSJed Brown } PRange; 243c4762a1bSJed Brown 2449371c9d4SSatish Balay typedef enum { 2459371c9d4SSatish Balay THIASSEMBLY_TRIDIAGONAL, 2469371c9d4SSatish Balay THIASSEMBLY_FULL 2479371c9d4SSatish Balay } THIAssemblyMode; 248c4762a1bSJed Brown 249c4762a1bSJed Brown struct _p_THI { 250c4762a1bSJed Brown PETSCHEADER(int); 251c4762a1bSJed Brown void (*initialize)(THI, PetscReal x, PetscReal y, PrmNode *p); 252c4762a1bSJed Brown PetscInt zlevels; 253c4762a1bSJed Brown PetscReal Lx, Ly, Lz; /* Model domain */ 254c4762a1bSJed Brown PetscReal alpha; /* Bed angle */ 255c4762a1bSJed Brown Units units; 256c4762a1bSJed Brown PetscReal dirichlet_scale; 257c4762a1bSJed Brown PetscReal ssa_friction_scale; 258c4762a1bSJed Brown PRange eta; 259c4762a1bSJed Brown PRange beta2; 260c4762a1bSJed Brown struct { 261c4762a1bSJed Brown PetscReal Bd2, eps, exponent; 262c4762a1bSJed Brown } viscosity; 263c4762a1bSJed Brown struct { 264c4762a1bSJed Brown PetscReal irefgam, eps2, exponent, refvel, epsvel; 265c4762a1bSJed Brown } friction; 266c4762a1bSJed Brown PetscReal rhog; 267c4762a1bSJed Brown PetscBool no_slip; 268c4762a1bSJed Brown PetscBool tridiagonal; 269c4762a1bSJed Brown PetscBool coarse2d; 270c4762a1bSJed Brown PetscBool verbose; 271c4762a1bSJed Brown MatType mattype; 272c4762a1bSJed Brown }; 273c4762a1bSJed Brown 274c4762a1bSJed Brown struct _n_Units { 275c4762a1bSJed Brown /* fundamental */ 276c4762a1bSJed Brown PetscReal meter; 277c4762a1bSJed Brown PetscReal kilogram; 278c4762a1bSJed Brown PetscReal second; 279c4762a1bSJed Brown /* derived */ 280c4762a1bSJed Brown PetscReal Pascal; 281c4762a1bSJed Brown PetscReal year; 282c4762a1bSJed Brown }; 283c4762a1bSJed Brown 284c4762a1bSJed Brown static PetscErrorCode THIJacobianLocal_3D_Full(DMDALocalInfo *, Node ***, Mat, Mat, THI); 285c4762a1bSJed Brown static PetscErrorCode THIJacobianLocal_3D_Tridiagonal(DMDALocalInfo *, Node ***, Mat, Mat, THI); 286c4762a1bSJed Brown static PetscErrorCode THIJacobianLocal_2D(DMDALocalInfo *, Node **, Mat, Mat, THI); 287c4762a1bSJed Brown 2889371c9d4SSatish Balay static void PrmHexGetZ(const PrmNode pn[], PetscInt k, PetscInt zm, PetscReal zn[]) { 2899371c9d4SSatish Balay const PetscScalar zm1 = zm - 1, znl[8] = {pn[0].b + pn[0].h * (PetscScalar)k / zm1, pn[1].b + pn[1].h * (PetscScalar)k / zm1, pn[2].b + pn[2].h * (PetscScalar)k / zm1, pn[3].b + pn[3].h * (PetscScalar)k / zm1, 2909371c9d4SSatish Balay pn[0].b + pn[0].h * (PetscScalar)(k + 1) / zm1, pn[1].b + pn[1].h * (PetscScalar)(k + 1) / zm1, pn[2].b + pn[2].h * (PetscScalar)(k + 1) / zm1, pn[3].b + pn[3].h * (PetscScalar)(k + 1) / zm1}; 291c4762a1bSJed Brown PetscInt i; 292c4762a1bSJed Brown for (i = 0; i < 8; i++) zn[i] = PetscRealPart(znl[i]); 293c4762a1bSJed Brown } 294c4762a1bSJed Brown 295c4762a1bSJed Brown /* Tests A and C are from the ISMIP-HOM paper (Pattyn et al. 2008) */ 2969371c9d4SSatish Balay static void THIInitialize_HOM_A(THI thi, PetscReal x, PetscReal y, PrmNode *p) { 297c4762a1bSJed Brown Units units = thi->units; 298c4762a1bSJed Brown PetscReal s = -x * PetscSinReal(thi->alpha); 299c4762a1bSJed Brown 300c4762a1bSJed Brown p->b = s - 1000 * units->meter + 500 * units->meter * PetscSinReal(x * 2 * PETSC_PI / thi->Lx) * PetscSinReal(y * 2 * PETSC_PI / thi->Ly); 301c4762a1bSJed Brown p->h = s - p->b; 302c4762a1bSJed Brown p->beta2 = 1e30; 303c4762a1bSJed Brown } 304c4762a1bSJed Brown 3059371c9d4SSatish Balay static void THIInitialize_HOM_C(THI thi, PetscReal x, PetscReal y, PrmNode *p) { 306c4762a1bSJed Brown Units units = thi->units; 307c4762a1bSJed Brown PetscReal s = -x * PetscSinReal(thi->alpha); 308c4762a1bSJed Brown 309c4762a1bSJed Brown p->b = s - 1000 * units->meter; 310c4762a1bSJed Brown p->h = s - p->b; 311c4762a1bSJed Brown /* tau_b = beta2 v is a stress (Pa) */ 312c4762a1bSJed Brown p->beta2 = 1000 * (1 + PetscSinReal(x * 2 * PETSC_PI / thi->Lx) * PetscSinReal(y * 2 * PETSC_PI / thi->Ly)) * units->Pascal * units->year / units->meter; 313c4762a1bSJed Brown } 314c4762a1bSJed Brown 315c4762a1bSJed Brown /* These are just toys */ 316c4762a1bSJed Brown 317c4762a1bSJed Brown /* Same bed as test A, free slip everywhere except for a discontinuous jump to a circular sticky region in the middle. */ 3189371c9d4SSatish Balay static void THIInitialize_HOM_X(THI thi, PetscReal xx, PetscReal yy, PrmNode *p) { 319c4762a1bSJed Brown Units units = thi->units; 320c4762a1bSJed Brown PetscReal x = xx * 2 * PETSC_PI / thi->Lx - PETSC_PI, y = yy * 2 * PETSC_PI / thi->Ly - PETSC_PI; /* [-pi,pi] */ 321c4762a1bSJed Brown PetscReal r = PetscSqrtReal(x * x + y * y), s = -x * PetscSinReal(thi->alpha); 322c4762a1bSJed Brown p->b = s - 1000 * units->meter + 500 * units->meter * PetscSinReal(x + PETSC_PI) * PetscSinReal(y + PETSC_PI); 323c4762a1bSJed Brown p->h = s - p->b; 324c4762a1bSJed Brown p->beta2 = 1000 * (r < 1 ? 2 : 0) * units->Pascal * units->year / units->meter; 325c4762a1bSJed Brown } 326c4762a1bSJed Brown 327c4762a1bSJed Brown /* Like Z, but with 200 meter cliffs */ 3289371c9d4SSatish Balay static void THIInitialize_HOM_Y(THI thi, PetscReal xx, PetscReal yy, PrmNode *p) { 329c4762a1bSJed Brown Units units = thi->units; 330c4762a1bSJed Brown PetscReal x = xx * 2 * PETSC_PI / thi->Lx - PETSC_PI, y = yy * 2 * PETSC_PI / thi->Ly - PETSC_PI; /* [-pi,pi] */ 331c4762a1bSJed Brown PetscReal r = PetscSqrtReal(x * x + y * y), s = -x * PetscSinReal(thi->alpha); 332c4762a1bSJed Brown 333c4762a1bSJed Brown p->b = s - 1000 * units->meter + 500 * units->meter * PetscSinReal(x + PETSC_PI) * PetscSinReal(y + PETSC_PI); 334c4762a1bSJed Brown if (PetscRealPart(p->b) > -700 * units->meter) p->b += 200 * units->meter; 335c4762a1bSJed Brown p->h = s - p->b; 336c4762a1bSJed Brown p->beta2 = 1000 * (1. + PetscSinReal(PetscSqrtReal(16 * r)) / PetscSqrtReal(1e-2 + 16 * r) * PetscCosReal(x * 3 / 2) * PetscCosReal(y * 3 / 2)) * units->Pascal * units->year / units->meter; 337c4762a1bSJed Brown } 338c4762a1bSJed Brown 339c4762a1bSJed Brown /* Same bed as A, smoothly varying slipperiness, similar to MATLAB's "sombrero" (uncorrelated with bathymetry) */ 3409371c9d4SSatish Balay static void THIInitialize_HOM_Z(THI thi, PetscReal xx, PetscReal yy, PrmNode *p) { 341c4762a1bSJed Brown Units units = thi->units; 342c4762a1bSJed Brown PetscReal x = xx * 2 * PETSC_PI / thi->Lx - PETSC_PI, y = yy * 2 * PETSC_PI / thi->Ly - PETSC_PI; /* [-pi,pi] */ 343c4762a1bSJed Brown PetscReal r = PetscSqrtReal(x * x + y * y), s = -x * PetscSinReal(thi->alpha); 344c4762a1bSJed Brown 345c4762a1bSJed Brown p->b = s - 1000 * units->meter + 500 * units->meter * PetscSinReal(x + PETSC_PI) * PetscSinReal(y + PETSC_PI); 346c4762a1bSJed Brown p->h = s - p->b; 347c4762a1bSJed Brown p->beta2 = 1000 * (1. + PetscSinReal(PetscSqrtReal(16 * r)) / PetscSqrtReal(1e-2 + 16 * r) * PetscCosReal(x * 3 / 2) * PetscCosReal(y * 3 / 2)) * units->Pascal * units->year / units->meter; 348c4762a1bSJed Brown } 349c4762a1bSJed Brown 3509371c9d4SSatish Balay static void THIFriction(THI thi, PetscReal rbeta2, PetscReal gam, PetscReal *beta2, PetscReal *dbeta2) { 351c4762a1bSJed Brown if (thi->friction.irefgam == 0) { 352c4762a1bSJed Brown Units units = thi->units; 353c4762a1bSJed Brown thi->friction.irefgam = 1. / (0.5 * PetscSqr(thi->friction.refvel * units->meter / units->year)); 354c4762a1bSJed Brown thi->friction.eps2 = 0.5 * PetscSqr(thi->friction.epsvel * units->meter / units->year) * thi->friction.irefgam; 355c4762a1bSJed Brown } 356c4762a1bSJed Brown if (thi->friction.exponent == 0) { 357c4762a1bSJed Brown *beta2 = rbeta2; 358c4762a1bSJed Brown *dbeta2 = 0; 359c4762a1bSJed Brown } else { 360c4762a1bSJed Brown *beta2 = rbeta2 * PetscPowReal(thi->friction.eps2 + gam * thi->friction.irefgam, thi->friction.exponent); 361c4762a1bSJed Brown *dbeta2 = thi->friction.exponent * *beta2 / (thi->friction.eps2 + gam * thi->friction.irefgam) * thi->friction.irefgam; 362c4762a1bSJed Brown } 363c4762a1bSJed Brown } 364c4762a1bSJed Brown 3659371c9d4SSatish Balay static void THIViscosity(THI thi, PetscReal gam, PetscReal *eta, PetscReal *deta) { 366c4762a1bSJed Brown PetscReal Bd2, eps, exponent; 367c4762a1bSJed Brown if (thi->viscosity.Bd2 == 0) { 368c4762a1bSJed Brown Units units = thi->units; 3699371c9d4SSatish Balay const PetscReal n = 3., /* Glen exponent */ 370c4762a1bSJed Brown p = 1. + 1. / n, /* for Stokes */ 371c4762a1bSJed Brown A = 1.e-16 * PetscPowReal(units->Pascal, -n) / units->year, /* softness parameter (Pa^{-n}/s) */ 372c4762a1bSJed Brown B = PetscPowReal(A, -1. / n); /* hardness parameter */ 373c4762a1bSJed Brown thi->viscosity.Bd2 = B / 2; 374c4762a1bSJed Brown thi->viscosity.exponent = (p - 2) / 2; 375c4762a1bSJed Brown thi->viscosity.eps = 0.5 * PetscSqr(1e-5 / units->year); 376c4762a1bSJed Brown } 377c4762a1bSJed Brown Bd2 = thi->viscosity.Bd2; 378c4762a1bSJed Brown exponent = thi->viscosity.exponent; 379c4762a1bSJed Brown eps = thi->viscosity.eps; 380c4762a1bSJed Brown *eta = Bd2 * PetscPowReal(eps + gam, exponent); 381c4762a1bSJed Brown *deta = exponent * (*eta) / (eps + gam); 382c4762a1bSJed Brown } 383c4762a1bSJed Brown 3849371c9d4SSatish Balay static void RangeUpdate(PetscReal *min, PetscReal *max, PetscReal x) { 385c4762a1bSJed Brown if (x < *min) *min = x; 386c4762a1bSJed Brown if (x > *max) *max = x; 387c4762a1bSJed Brown } 388c4762a1bSJed Brown 3899371c9d4SSatish Balay static void PRangeClear(PRange *p) { 390c4762a1bSJed Brown p->cmin = p->min = 1e100; 391c4762a1bSJed Brown p->cmax = p->max = -1e100; 392c4762a1bSJed Brown } 393c4762a1bSJed Brown 3949371c9d4SSatish Balay static PetscErrorCode PRangeMinMax(PRange *p, PetscReal min, PetscReal max) { 395c4762a1bSJed Brown PetscFunctionBeginUser; 396c4762a1bSJed Brown p->cmin = min; 397c4762a1bSJed Brown p->cmax = max; 398c4762a1bSJed Brown if (min < p->min) p->min = min; 399c4762a1bSJed Brown if (max > p->max) p->max = max; 400c4762a1bSJed Brown PetscFunctionReturn(0); 401c4762a1bSJed Brown } 402c4762a1bSJed Brown 4039371c9d4SSatish Balay static PetscErrorCode THIDestroy(THI *thi) { 404c4762a1bSJed Brown PetscFunctionBeginUser; 405c4762a1bSJed Brown if (!*thi) PetscFunctionReturn(0); 4069371c9d4SSatish Balay if (--((PetscObject)(*thi))->refct > 0) { 4079371c9d4SSatish Balay *thi = 0; 4089371c9d4SSatish Balay PetscFunctionReturn(0); 4099371c9d4SSatish Balay } 4109566063dSJacob Faibussowitsch PetscCall(PetscFree((*thi)->units)); 4119566063dSJacob Faibussowitsch PetscCall(PetscFree((*thi)->mattype)); 4129566063dSJacob Faibussowitsch PetscCall(PetscHeaderDestroy(thi)); 413c4762a1bSJed Brown PetscFunctionReturn(0); 414c4762a1bSJed Brown } 415c4762a1bSJed Brown 4169371c9d4SSatish Balay static PetscErrorCode THICreate(MPI_Comm comm, THI *inthi) { 417c4762a1bSJed Brown static PetscBool registered = PETSC_FALSE; 418c4762a1bSJed Brown THI thi; 419c4762a1bSJed Brown Units units; 420c4762a1bSJed Brown 421c4762a1bSJed Brown PetscFunctionBeginUser; 422c4762a1bSJed Brown *inthi = 0; 423c4762a1bSJed Brown if (!registered) { 4249566063dSJacob Faibussowitsch PetscCall(PetscClassIdRegister("Toy Hydrostatic Ice", &THI_CLASSID)); 425c4762a1bSJed Brown registered = PETSC_TRUE; 426c4762a1bSJed Brown } 4279566063dSJacob Faibussowitsch PetscCall(PetscHeaderCreate(thi, THI_CLASSID, "THI", "Toy Hydrostatic Ice", "", comm, THIDestroy, 0)); 428c4762a1bSJed Brown 4299566063dSJacob Faibussowitsch PetscCall(PetscNew(&thi->units)); 430c4762a1bSJed Brown units = thi->units; 431c4762a1bSJed Brown units->meter = 1e-2; 432c4762a1bSJed Brown units->second = 1e-7; 433c4762a1bSJed Brown units->kilogram = 1e-12; 434c4762a1bSJed Brown 435d0609cedSBarry Smith PetscOptionsBegin(comm, NULL, "Scaled units options", ""); 436c4762a1bSJed Brown { 4379566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-units_meter", "1 meter in scaled length units", "", units->meter, &units->meter, NULL)); 4389566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-units_second", "1 second in scaled time units", "", units->second, &units->second, NULL)); 4399566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-units_kilogram", "1 kilogram in scaled mass units", "", units->kilogram, &units->kilogram, NULL)); 440c4762a1bSJed Brown } 441d0609cedSBarry Smith PetscOptionsEnd(); 442c4762a1bSJed Brown units->Pascal = units->kilogram / (units->meter * PetscSqr(units->second)); 443c4762a1bSJed Brown units->year = 31556926. * units->second; /* seconds per year */ 444c4762a1bSJed Brown 445c4762a1bSJed Brown thi->Lx = 10.e3; 446c4762a1bSJed Brown thi->Ly = 10.e3; 447c4762a1bSJed Brown thi->Lz = 1000; 448c4762a1bSJed Brown thi->dirichlet_scale = 1; 449c4762a1bSJed Brown thi->verbose = PETSC_FALSE; 450c4762a1bSJed Brown 451d0609cedSBarry Smith PetscOptionsBegin(comm, NULL, "Toy Hydrostatic Ice options", ""); 452c4762a1bSJed Brown { 453c4762a1bSJed Brown QuadratureType quad = QUAD_GAUSS; 454c4762a1bSJed Brown char homexp[] = "A"; 455c4762a1bSJed Brown char mtype[256] = MATSBAIJ; 456c4762a1bSJed Brown PetscReal L, m = 1.0; 457c4762a1bSJed Brown PetscBool flg; 458c4762a1bSJed Brown L = thi->Lx; 4599566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-thi_L", "Domain size (m)", "", L, &L, &flg)); 460c4762a1bSJed Brown if (flg) thi->Lx = thi->Ly = L; 4619566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-thi_Lx", "X Domain size (m)", "", thi->Lx, &thi->Lx, NULL)); 4629566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-thi_Ly", "Y Domain size (m)", "", thi->Ly, &thi->Ly, NULL)); 4639566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-thi_Lz", "Z Domain size (m)", "", thi->Lz, &thi->Lz, NULL)); 4649566063dSJacob Faibussowitsch PetscCall(PetscOptionsString("-thi_hom", "ISMIP-HOM experiment (A or C)", "", homexp, homexp, sizeof(homexp), NULL)); 465c4762a1bSJed Brown switch (homexp[0] = toupper(homexp[0])) { 466c4762a1bSJed Brown case 'A': 467c4762a1bSJed Brown thi->initialize = THIInitialize_HOM_A; 468c4762a1bSJed Brown thi->no_slip = PETSC_TRUE; 469c4762a1bSJed Brown thi->alpha = 0.5; 470c4762a1bSJed Brown break; 471c4762a1bSJed Brown case 'C': 472c4762a1bSJed Brown thi->initialize = THIInitialize_HOM_C; 473c4762a1bSJed Brown thi->no_slip = PETSC_FALSE; 474c4762a1bSJed Brown thi->alpha = 0.1; 475c4762a1bSJed Brown break; 476c4762a1bSJed Brown case 'X': 477c4762a1bSJed Brown thi->initialize = THIInitialize_HOM_X; 478c4762a1bSJed Brown thi->no_slip = PETSC_FALSE; 479c4762a1bSJed Brown thi->alpha = 0.3; 480c4762a1bSJed Brown break; 481c4762a1bSJed Brown case 'Y': 482c4762a1bSJed Brown thi->initialize = THIInitialize_HOM_Y; 483c4762a1bSJed Brown thi->no_slip = PETSC_FALSE; 484c4762a1bSJed Brown thi->alpha = 0.5; 485c4762a1bSJed Brown break; 486c4762a1bSJed Brown case 'Z': 487c4762a1bSJed Brown thi->initialize = THIInitialize_HOM_Z; 488c4762a1bSJed Brown thi->no_slip = PETSC_FALSE; 489c4762a1bSJed Brown thi->alpha = 0.5; 490c4762a1bSJed Brown break; 4919371c9d4SSatish Balay default: SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "HOM experiment '%c' not implemented", homexp[0]); 492c4762a1bSJed Brown } 4939566063dSJacob Faibussowitsch PetscCall(PetscOptionsEnum("-thi_quadrature", "Quadrature to use for 3D elements", "", QuadratureTypes, (PetscEnum)quad, (PetscEnum *)&quad, NULL)); 494c4762a1bSJed Brown switch (quad) { 495c4762a1bSJed Brown case QUAD_GAUSS: 496c4762a1bSJed Brown HexQInterp = HexQInterp_Gauss; 497c4762a1bSJed Brown HexQDeriv = HexQDeriv_Gauss; 498c4762a1bSJed Brown break; 499c4762a1bSJed Brown case QUAD_LOBATTO: 500c4762a1bSJed Brown HexQInterp = HexQInterp_Lobatto; 501c4762a1bSJed Brown HexQDeriv = HexQDeriv_Lobatto; 502c4762a1bSJed Brown break; 503c4762a1bSJed Brown } 5049566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-thi_alpha", "Bed angle (degrees)", "", thi->alpha, &thi->alpha, NULL)); 505c4762a1bSJed Brown 506c4762a1bSJed Brown thi->friction.refvel = 100.; 507c4762a1bSJed Brown thi->friction.epsvel = 1.; 508c4762a1bSJed Brown 5099566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-thi_friction_refvel", "Reference velocity for sliding", "", thi->friction.refvel, &thi->friction.refvel, NULL)); 5109566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-thi_friction_epsvel", "Regularization velocity for sliding", "", thi->friction.epsvel, &thi->friction.epsvel, NULL)); 5119566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-thi_friction_m", "Friction exponent, 0=Coulomb, 1=Navier", "", m, &m, NULL)); 512c4762a1bSJed Brown 513c4762a1bSJed Brown thi->friction.exponent = (m - 1) / 2; 514c4762a1bSJed Brown 5159566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-thi_dirichlet_scale", "Scale Dirichlet boundary conditions by this factor", "", thi->dirichlet_scale, &thi->dirichlet_scale, NULL)); 5169566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-thi_ssa_friction_scale", "Scale slip boundary conditions by this factor in SSA (2D) assembly", "", thi->ssa_friction_scale, &thi->ssa_friction_scale, NULL)); 5179566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-thi_coarse2d", "Use a 2D coarse space corresponding to SSA", "", thi->coarse2d, &thi->coarse2d, NULL)); 5189566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-thi_tridiagonal", "Assemble a tridiagonal system (column coupling only) on the finest level", "", thi->tridiagonal, &thi->tridiagonal, NULL)); 5199566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-thi_mat_type", "Matrix type", "MatSetType", MatList, mtype, (char *)mtype, sizeof(mtype), NULL)); 5209566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(mtype, (char **)&thi->mattype)); 5219566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-thi_verbose", "Enable verbose output (like matrix sizes and statistics)", "", thi->verbose, &thi->verbose, NULL)); 522c4762a1bSJed Brown } 523d0609cedSBarry Smith PetscOptionsEnd(); 524c4762a1bSJed Brown 525c4762a1bSJed Brown /* dimensionalize */ 526c4762a1bSJed Brown thi->Lx *= units->meter; 527c4762a1bSJed Brown thi->Ly *= units->meter; 528c4762a1bSJed Brown thi->Lz *= units->meter; 529c4762a1bSJed Brown thi->alpha *= PETSC_PI / 180; 530c4762a1bSJed Brown 531c4762a1bSJed Brown PRangeClear(&thi->eta); 532c4762a1bSJed Brown PRangeClear(&thi->beta2); 533c4762a1bSJed Brown 534c4762a1bSJed Brown { 5359371c9d4SSatish Balay PetscReal u = 1000 * units->meter / (3e7 * units->second), gradu = u / (100 * units->meter), eta, deta, rho = 910 * units->kilogram / PetscPowReal(units->meter, 3), grav = 9.81 * units->meter / PetscSqr(units->second), 536c4762a1bSJed Brown driving = rho * grav * PetscSinReal(thi->alpha) * 1000 * units->meter; 537c4762a1bSJed Brown THIViscosity(thi, 0.5 * gradu * gradu, &eta, &deta); 538c4762a1bSJed Brown thi->rhog = rho * grav; 539c4762a1bSJed Brown if (thi->verbose) { 5409566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)thi), "Units: meter %8.2g second %8.2g kg %8.2g Pa %8.2g\n", (double)units->meter, (double)units->second, (double)units->kilogram, (double)units->Pascal)); 5419566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)thi), "Domain (%6.2g,%6.2g,%6.2g), pressure %8.2g, driving stress %8.2g\n", (double)thi->Lx, (double)thi->Ly, (double)thi->Lz, (double)(rho * grav * 1e3 * units->meter), (double)driving)); 5429566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)thi), "Large velocity 1km/a %8.2g, velocity gradient %8.2g, eta %8.2g, stress %8.2g, ratio %8.2g\n", (double)u, (double)gradu, (double)eta, (double)(2 * eta * gradu), (double)(2 * eta * gradu / driving))); 543c4762a1bSJed Brown THIViscosity(thi, 0.5 * PetscSqr(1e-3 * gradu), &eta, &deta); 5449566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)thi), "Small velocity 1m/a %8.2g, velocity gradient %8.2g, eta %8.2g, stress %8.2g, ratio %8.2g\n", (double)(1e-3 * u), (double)(1e-3 * gradu), (double)eta, (double)(2 * eta * 1e-3 * gradu), (double)(2 * eta * 1e-3 * gradu / driving))); 545c4762a1bSJed Brown } 546c4762a1bSJed Brown } 547c4762a1bSJed Brown 548c4762a1bSJed Brown *inthi = thi; 549c4762a1bSJed Brown PetscFunctionReturn(0); 550c4762a1bSJed Brown } 551c4762a1bSJed Brown 5529371c9d4SSatish Balay static PetscErrorCode THIInitializePrm(THI thi, DM da2prm, Vec prm) { 553c4762a1bSJed Brown PrmNode **p; 554c4762a1bSJed Brown PetscInt i, j, xs, xm, ys, ym, mx, my; 555c4762a1bSJed Brown 556c4762a1bSJed Brown PetscFunctionBeginUser; 5579566063dSJacob Faibussowitsch PetscCall(DMDAGetGhostCorners(da2prm, &ys, &xs, 0, &ym, &xm, 0)); 5589566063dSJacob Faibussowitsch PetscCall(DMDAGetInfo(da2prm, 0, &my, &mx, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0)); 5599566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArray(da2prm, prm, &p)); 560c4762a1bSJed Brown for (i = xs; i < xs + xm; i++) { 561c4762a1bSJed Brown for (j = ys; j < ys + ym; j++) { 562c4762a1bSJed Brown PetscReal xx = thi->Lx * i / mx, yy = thi->Ly * j / my; 563c4762a1bSJed Brown thi->initialize(thi, xx, yy, &p[i][j]); 564c4762a1bSJed Brown } 565c4762a1bSJed Brown } 5669566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArray(da2prm, prm, &p)); 567c4762a1bSJed Brown PetscFunctionReturn(0); 568c4762a1bSJed Brown } 569c4762a1bSJed Brown 5709371c9d4SSatish Balay static PetscErrorCode THISetUpDM(THI thi, DM dm) { 571c4762a1bSJed Brown PetscInt refinelevel, coarsenlevel, level, dim, Mx, My, Mz, mx, my, s; 572c4762a1bSJed Brown DMDAStencilType st; 573c4762a1bSJed Brown DM da2prm; 574c4762a1bSJed Brown Vec X; 575c4762a1bSJed Brown 576c4762a1bSJed Brown PetscFunctionBeginUser; 5779566063dSJacob Faibussowitsch PetscCall(DMDAGetInfo(dm, &dim, &Mz, &My, &Mx, 0, &my, &mx, 0, &s, 0, 0, 0, &st)); 578*48a46eb9SPierre Jolivet if (dim == 2) PetscCall(DMDAGetInfo(dm, &dim, &My, &Mx, 0, &my, &mx, 0, 0, &s, 0, 0, 0, &st)); 5799566063dSJacob Faibussowitsch PetscCall(DMGetRefineLevel(dm, &refinelevel)); 5809566063dSJacob Faibussowitsch PetscCall(DMGetCoarsenLevel(dm, &coarsenlevel)); 581c4762a1bSJed Brown level = refinelevel - coarsenlevel; 5829566063dSJacob Faibussowitsch PetscCall(DMDACreate2d(PetscObjectComm((PetscObject)thi), DM_BOUNDARY_PERIODIC, DM_BOUNDARY_PERIODIC, st, My, Mx, my, mx, sizeof(PrmNode) / sizeof(PetscScalar), s, 0, 0, &da2prm)); 5839566063dSJacob Faibussowitsch PetscCall(DMSetUp(da2prm)); 5849566063dSJacob Faibussowitsch PetscCall(DMCreateLocalVector(da2prm, &X)); 585c4762a1bSJed Brown { 586c4762a1bSJed Brown PetscReal Lx = thi->Lx / thi->units->meter, Ly = thi->Ly / thi->units->meter, Lz = thi->Lz / thi->units->meter; 587c4762a1bSJed Brown if (dim == 2) { 58863a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)thi), "Level %" PetscInt_FMT " domain size (m) %8.2g x %8.2g, num elements %" PetscInt_FMT " x %" PetscInt_FMT " (%" PetscInt_FMT "), size (m) %g x %g\n", level, (double)Lx, (double)Ly, Mx, My, Mx * My, (double)(Lx / Mx), (double)(Ly / My))); 589c4762a1bSJed Brown } else { 59063a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)thi), "Level %" PetscInt_FMT " domain size (m) %8.2g x %8.2g x %8.2g, num elements %" PetscInt_FMT " x %" PetscInt_FMT " x %" PetscInt_FMT " (%" PetscInt_FMT "), size (m) %g x %g x %g\n", level, (double)Lx, (double)Ly, (double)Lz, Mx, My, Mz, Mx * My * Mz, (double)(Lx / Mx), (double)(Ly / My), (double)(1000. / (Mz - 1)))); 591c4762a1bSJed Brown } 592c4762a1bSJed Brown } 5939566063dSJacob Faibussowitsch PetscCall(THIInitializePrm(thi, da2prm, X)); 594c4762a1bSJed Brown if (thi->tridiagonal) { /* Reset coarse Jacobian evaluation */ 5959566063dSJacob Faibussowitsch PetscCall(DMDASNESSetJacobianLocal(dm, (DMDASNESJacobian)THIJacobianLocal_3D_Full, thi)); 596c4762a1bSJed Brown } 5971baa6e33SBarry Smith if (thi->coarse2d) PetscCall(DMDASNESSetJacobianLocal(dm, (DMDASNESJacobian)THIJacobianLocal_2D, thi)); 5989566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)dm, "DMDA2Prm", (PetscObject)da2prm)); 5999566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)dm, "DMDA2Prm_Vec", (PetscObject)X)); 6009566063dSJacob Faibussowitsch PetscCall(DMDestroy(&da2prm)); 6019566063dSJacob Faibussowitsch PetscCall(VecDestroy(&X)); 602c4762a1bSJed Brown PetscFunctionReturn(0); 603c4762a1bSJed Brown } 604c4762a1bSJed Brown 6059371c9d4SSatish Balay static PetscErrorCode DMCoarsenHook_THI(DM dmf, DM dmc, void *ctx) { 606c4762a1bSJed Brown THI thi = (THI)ctx; 607c4762a1bSJed Brown PetscInt rlevel, clevel; 608c4762a1bSJed Brown 609c4762a1bSJed Brown PetscFunctionBeginUser; 6109566063dSJacob Faibussowitsch PetscCall(THISetUpDM(thi, dmc)); 6119566063dSJacob Faibussowitsch PetscCall(DMGetRefineLevel(dmc, &rlevel)); 6129566063dSJacob Faibussowitsch PetscCall(DMGetCoarsenLevel(dmc, &clevel)); 6139566063dSJacob Faibussowitsch if (rlevel - clevel == 0) PetscCall(DMSetMatType(dmc, MATAIJ)); 6149566063dSJacob Faibussowitsch PetscCall(DMCoarsenHookAdd(dmc, DMCoarsenHook_THI, NULL, thi)); 615c4762a1bSJed Brown PetscFunctionReturn(0); 616c4762a1bSJed Brown } 617c4762a1bSJed Brown 6189371c9d4SSatish Balay static PetscErrorCode DMRefineHook_THI(DM dmc, DM dmf, void *ctx) { 619c4762a1bSJed Brown THI thi = (THI)ctx; 620c4762a1bSJed Brown 621c4762a1bSJed Brown PetscFunctionBeginUser; 6229566063dSJacob Faibussowitsch PetscCall(THISetUpDM(thi, dmf)); 6239566063dSJacob Faibussowitsch PetscCall(DMSetMatType(dmf, thi->mattype)); 6249566063dSJacob Faibussowitsch PetscCall(DMRefineHookAdd(dmf, DMRefineHook_THI, NULL, thi)); 625c4762a1bSJed Brown /* With grid sequencing, a formerly-refined DM will later be coarsened by PCSetUp_MG */ 6269566063dSJacob Faibussowitsch PetscCall(DMCoarsenHookAdd(dmf, DMCoarsenHook_THI, NULL, thi)); 627c4762a1bSJed Brown PetscFunctionReturn(0); 628c4762a1bSJed Brown } 629c4762a1bSJed Brown 6309371c9d4SSatish Balay static PetscErrorCode THIDAGetPrm(DM da, PrmNode ***prm) { 631c4762a1bSJed Brown DM da2prm; 632c4762a1bSJed Brown Vec X; 633c4762a1bSJed Brown 634c4762a1bSJed Brown PetscFunctionBeginUser; 6359566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)da, "DMDA2Prm", (PetscObject *)&da2prm)); 63628b400f6SJacob Faibussowitsch PetscCheck(da2prm, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "No DMDA2Prm composed with given DMDA"); 6379566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)da, "DMDA2Prm_Vec", (PetscObject *)&X)); 63828b400f6SJacob Faibussowitsch PetscCheck(X, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "No DMDA2Prm_Vec composed with given DMDA"); 6399566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArray(da2prm, X, prm)); 640c4762a1bSJed Brown PetscFunctionReturn(0); 641c4762a1bSJed Brown } 642c4762a1bSJed Brown 6439371c9d4SSatish Balay static PetscErrorCode THIDARestorePrm(DM da, PrmNode ***prm) { 644c4762a1bSJed Brown DM da2prm; 645c4762a1bSJed Brown Vec X; 646c4762a1bSJed Brown 647c4762a1bSJed Brown PetscFunctionBeginUser; 6489566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)da, "DMDA2Prm", (PetscObject *)&da2prm)); 64928b400f6SJacob Faibussowitsch PetscCheck(da2prm, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "No DMDA2Prm composed with given DMDA"); 6509566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)da, "DMDA2Prm_Vec", (PetscObject *)&X)); 65128b400f6SJacob Faibussowitsch PetscCheck(X, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "No DMDA2Prm_Vec composed with given DMDA"); 6529566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArray(da2prm, X, prm)); 653c4762a1bSJed Brown PetscFunctionReturn(0); 654c4762a1bSJed Brown } 655c4762a1bSJed Brown 6569371c9d4SSatish Balay static PetscErrorCode THIInitial(SNES snes, Vec X, void *ctx) { 657c4762a1bSJed Brown THI thi; 658c4762a1bSJed Brown PetscInt i, j, k, xs, xm, ys, ym, zs, zm, mx, my; 659c4762a1bSJed Brown PetscReal hx, hy; 660c4762a1bSJed Brown PrmNode **prm; 661c4762a1bSJed Brown Node ***x; 662c4762a1bSJed Brown DM da; 663c4762a1bSJed Brown 664c4762a1bSJed Brown PetscFunctionBeginUser; 6659566063dSJacob Faibussowitsch PetscCall(SNESGetDM(snes, &da)); 6669566063dSJacob Faibussowitsch PetscCall(DMGetApplicationContext(da, &thi)); 6679566063dSJacob Faibussowitsch PetscCall(DMDAGetInfo(da, 0, 0, &my, &mx, 0, 0, 0, 0, 0, 0, 0, 0, 0)); 6689566063dSJacob Faibussowitsch PetscCall(DMDAGetCorners(da, &zs, &ys, &xs, &zm, &ym, &xm)); 6699566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArray(da, X, &x)); 6709566063dSJacob Faibussowitsch PetscCall(THIDAGetPrm(da, &prm)); 671c4762a1bSJed Brown hx = thi->Lx / mx; 672c4762a1bSJed Brown hy = thi->Ly / my; 673c4762a1bSJed Brown for (i = xs; i < xs + xm; i++) { 674c4762a1bSJed Brown for (j = ys; j < ys + ym; j++) { 675c4762a1bSJed Brown for (k = zs; k < zs + zm; k++) { 6769371c9d4SSatish Balay const PetscScalar zm1 = zm - 1, drivingx = thi->rhog * (prm[i + 1][j].b + prm[i + 1][j].h - prm[i - 1][j].b - prm[i - 1][j].h) / (2 * hx), drivingy = thi->rhog * (prm[i][j + 1].b + prm[i][j + 1].h - prm[i][j - 1].b - prm[i][j - 1].h) / (2 * hy); 677c4762a1bSJed Brown x[i][j][k].u = 0. * drivingx * prm[i][j].h * (PetscScalar)k / zm1; 678c4762a1bSJed Brown x[i][j][k].v = 0. * drivingy * prm[i][j].h * (PetscScalar)k / zm1; 679c4762a1bSJed Brown } 680c4762a1bSJed Brown } 681c4762a1bSJed Brown } 6829566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArray(da, X, &x)); 6839566063dSJacob Faibussowitsch PetscCall(THIDARestorePrm(da, &prm)); 684c4762a1bSJed Brown PetscFunctionReturn(0); 685c4762a1bSJed Brown } 686c4762a1bSJed Brown 6879371c9d4SSatish Balay static void PointwiseNonlinearity(THI thi, const Node n[PETSC_RESTRICT], const PetscReal phi[PETSC_RESTRICT], PetscReal dphi[PETSC_RESTRICT][3], PetscScalar *PETSC_RESTRICT u, PetscScalar *PETSC_RESTRICT v, PetscScalar du[PETSC_RESTRICT], PetscScalar dv[PETSC_RESTRICT], PetscReal *eta, PetscReal *deta) { 688c4762a1bSJed Brown PetscInt l, ll; 689c4762a1bSJed Brown PetscScalar gam; 690c4762a1bSJed Brown 691c4762a1bSJed Brown du[0] = du[1] = du[2] = 0; 692c4762a1bSJed Brown dv[0] = dv[1] = dv[2] = 0; 693c4762a1bSJed Brown *u = 0; 694c4762a1bSJed Brown *v = 0; 695c4762a1bSJed Brown for (l = 0; l < 8; l++) { 696c4762a1bSJed Brown *u += phi[l] * n[l].u; 697c4762a1bSJed Brown *v += phi[l] * n[l].v; 698c4762a1bSJed Brown for (ll = 0; ll < 3; ll++) { 699c4762a1bSJed Brown du[ll] += dphi[l][ll] * n[l].u; 700c4762a1bSJed Brown dv[ll] += dphi[l][ll] * n[l].v; 701c4762a1bSJed Brown } 702c4762a1bSJed Brown } 703c4762a1bSJed Brown gam = PetscSqr(du[0]) + PetscSqr(dv[1]) + du[0] * dv[1] + 0.25 * PetscSqr(du[1] + dv[0]) + 0.25 * PetscSqr(du[2]) + 0.25 * PetscSqr(dv[2]); 704c4762a1bSJed Brown THIViscosity(thi, PetscRealPart(gam), eta, deta); 705c4762a1bSJed Brown } 706c4762a1bSJed Brown 7079371c9d4SSatish Balay static void PointwiseNonlinearity2D(THI thi, Node n[], PetscReal phi[], PetscReal dphi[4][2], PetscScalar *u, PetscScalar *v, PetscScalar du[], PetscScalar dv[], PetscReal *eta, PetscReal *deta) { 708c4762a1bSJed Brown PetscInt l, ll; 709c4762a1bSJed Brown PetscScalar gam; 710c4762a1bSJed Brown 711c4762a1bSJed Brown du[0] = du[1] = 0; 712c4762a1bSJed Brown dv[0] = dv[1] = 0; 713c4762a1bSJed Brown *u = 0; 714c4762a1bSJed Brown *v = 0; 715c4762a1bSJed Brown for (l = 0; l < 4; l++) { 716c4762a1bSJed Brown *u += phi[l] * n[l].u; 717c4762a1bSJed Brown *v += phi[l] * n[l].v; 718c4762a1bSJed Brown for (ll = 0; ll < 2; ll++) { 719c4762a1bSJed Brown du[ll] += dphi[l][ll] * n[l].u; 720c4762a1bSJed Brown dv[ll] += dphi[l][ll] * n[l].v; 721c4762a1bSJed Brown } 722c4762a1bSJed Brown } 723c4762a1bSJed Brown gam = PetscSqr(du[0]) + PetscSqr(dv[1]) + du[0] * dv[1] + 0.25 * PetscSqr(du[1] + dv[0]); 724c4762a1bSJed Brown THIViscosity(thi, PetscRealPart(gam), eta, deta); 725c4762a1bSJed Brown } 726c4762a1bSJed Brown 7279371c9d4SSatish Balay static PetscErrorCode THIFunctionLocal(DMDALocalInfo *info, Node ***x, Node ***f, THI thi) { 728c4762a1bSJed Brown PetscInt xs, ys, xm, ym, zm, i, j, k, q, l; 729c4762a1bSJed Brown PetscReal hx, hy, etamin, etamax, beta2min, beta2max; 730c4762a1bSJed Brown PrmNode **prm; 731c4762a1bSJed Brown 732c4762a1bSJed Brown PetscFunctionBeginUser; 733c4762a1bSJed Brown xs = info->zs; 734c4762a1bSJed Brown ys = info->ys; 735c4762a1bSJed Brown xm = info->zm; 736c4762a1bSJed Brown ym = info->ym; 737c4762a1bSJed Brown zm = info->xm; 738c4762a1bSJed Brown hx = thi->Lx / info->mz; 739c4762a1bSJed Brown hy = thi->Ly / info->my; 740c4762a1bSJed Brown 741c4762a1bSJed Brown etamin = 1e100; 742c4762a1bSJed Brown etamax = 0; 743c4762a1bSJed Brown beta2min = 1e100; 744c4762a1bSJed Brown beta2max = 0; 745c4762a1bSJed Brown 7469566063dSJacob Faibussowitsch PetscCall(THIDAGetPrm(info->da, &prm)); 747c4762a1bSJed Brown 748c4762a1bSJed Brown for (i = xs; i < xs + xm; i++) { 749c4762a1bSJed Brown for (j = ys; j < ys + ym; j++) { 750c4762a1bSJed Brown PrmNode pn[4]; 751c4762a1bSJed Brown QuadExtract(prm, i, j, pn); 752c4762a1bSJed Brown for (k = 0; k < zm - 1; k++) { 753c4762a1bSJed Brown PetscInt ls = 0; 754c4762a1bSJed Brown Node n[8], *fn[8]; 755c4762a1bSJed Brown PetscReal zn[8], etabase = 0; 756c4762a1bSJed Brown PrmHexGetZ(pn, k, zm, zn); 757c4762a1bSJed Brown HexExtract(x, i, j, k, n); 758c4762a1bSJed Brown HexExtractRef(f, i, j, k, fn); 759c4762a1bSJed Brown if (thi->no_slip && k == 0) { 760c4762a1bSJed Brown for (l = 0; l < 4; l++) n[l].u = n[l].v = 0; 761c4762a1bSJed Brown /* The first 4 basis functions lie on the bottom layer, so their contribution is exactly 0, hence we can skip them */ 762c4762a1bSJed Brown ls = 4; 763c4762a1bSJed Brown } 764c4762a1bSJed Brown for (q = 0; q < 8; q++) { 765c4762a1bSJed Brown PetscReal dz[3], phi[8], dphi[8][3], jw, eta, deta; 766c4762a1bSJed Brown PetscScalar du[3], dv[3], u, v; 767c4762a1bSJed Brown HexGrad(HexQDeriv[q], zn, dz); 768c4762a1bSJed Brown HexComputeGeometry(q, hx, hy, dz, phi, dphi, &jw); 769c4762a1bSJed Brown PointwiseNonlinearity(thi, n, phi, dphi, &u, &v, du, dv, &eta, &deta); 770c4762a1bSJed Brown jw /= thi->rhog; /* scales residuals to be O(1) */ 771c4762a1bSJed Brown if (q == 0) etabase = eta; 772c4762a1bSJed Brown RangeUpdate(&etamin, &etamax, eta); 773c4762a1bSJed Brown for (l = ls; l < 8; l++) { /* test functions */ 774c4762a1bSJed Brown const PetscReal ds[2] = {-PetscSinReal(thi->alpha), 0}; 775c4762a1bSJed Brown const PetscReal pp = phi[l], *dp = dphi[l]; 776c4762a1bSJed Brown fn[l]->u += dp[0] * jw * eta * (4. * du[0] + 2. * dv[1]) + dp[1] * jw * eta * (du[1] + dv[0]) + dp[2] * jw * eta * du[2] + pp * jw * thi->rhog * ds[0]; 777c4762a1bSJed Brown fn[l]->v += dp[1] * jw * eta * (2. * du[0] + 4. * dv[1]) + dp[0] * jw * eta * (du[1] + dv[0]) + dp[2] * jw * eta * dv[2] + pp * jw * thi->rhog * ds[1]; 778c4762a1bSJed Brown } 779c4762a1bSJed Brown } 780c4762a1bSJed Brown if (k == 0) { /* we are on a bottom face */ 781c4762a1bSJed Brown if (thi->no_slip) { 782c4762a1bSJed Brown /* Note: Non-Galerkin coarse grid operators are very sensitive to the scaling of Dirichlet boundary 783c4762a1bSJed Brown * conditions. After shenanigans above, etabase contains the effective viscosity at the closest quadrature 784c4762a1bSJed Brown * point to the bed. We want the diagonal entry in the Dirichlet condition to have similar magnitude to the 785c4762a1bSJed Brown * diagonal entry corresponding to the adjacent node. The fundamental scaling of the viscous part is in 786c4762a1bSJed Brown * diagu, diagv below. This scaling is easy to recognize by considering the finite difference operator after 787c4762a1bSJed Brown * scaling by element size. The no-slip Dirichlet condition is scaled by this factor, and also in the 788c4762a1bSJed Brown * assembled matrix (see the similar block in THIJacobianLocal). 789c4762a1bSJed Brown * 790c4762a1bSJed Brown * Note that the residual at this Dirichlet node is linear in the state at this node, but also depends 791c4762a1bSJed Brown * (nonlinearly in general) on the neighboring interior nodes through the local viscosity. This will make 792c4762a1bSJed Brown * a matrix-free Jacobian have extra entries in the corresponding row. We assemble only the diagonal part, 793c4762a1bSJed Brown * so the solution will exactly satisfy the boundary condition after the first linear iteration. 794c4762a1bSJed Brown */ 795c4762a1bSJed Brown const PetscReal hz = PetscRealPart(pn[0].h) / (zm - 1.); 796c4762a1bSJed Brown const PetscScalar diagu = 2 * etabase / thi->rhog * (hx * hy / hz + hx * hz / hy + 4 * hy * hz / hx), diagv = 2 * etabase / thi->rhog * (hx * hy / hz + 4 * hx * hz / hy + hy * hz / hx); 797c4762a1bSJed Brown fn[0]->u = thi->dirichlet_scale * diagu * x[i][j][k].u; 798c4762a1bSJed Brown fn[0]->v = thi->dirichlet_scale * diagv * x[i][j][k].v; 799c4762a1bSJed Brown } else { /* Integrate over bottom face to apply boundary condition */ 800c4762a1bSJed Brown for (q = 0; q < 4; q++) { 801c4762a1bSJed Brown const PetscReal jw = 0.25 * hx * hy / thi->rhog, *phi = QuadQInterp[q]; 802c4762a1bSJed Brown PetscScalar u = 0, v = 0, rbeta2 = 0; 803c4762a1bSJed Brown PetscReal beta2, dbeta2; 804c4762a1bSJed Brown for (l = 0; l < 4; l++) { 805c4762a1bSJed Brown u += phi[l] * n[l].u; 806c4762a1bSJed Brown v += phi[l] * n[l].v; 807c4762a1bSJed Brown rbeta2 += phi[l] * pn[l].beta2; 808c4762a1bSJed Brown } 809c4762a1bSJed Brown THIFriction(thi, PetscRealPart(rbeta2), PetscRealPart(u * u + v * v) / 2, &beta2, &dbeta2); 810c4762a1bSJed Brown RangeUpdate(&beta2min, &beta2max, beta2); 811c4762a1bSJed Brown for (l = 0; l < 4; l++) { 812c4762a1bSJed Brown const PetscReal pp = phi[l]; 813c4762a1bSJed Brown fn[ls + l]->u += pp * jw * beta2 * u; 814c4762a1bSJed Brown fn[ls + l]->v += pp * jw * beta2 * v; 815c4762a1bSJed Brown } 816c4762a1bSJed Brown } 817c4762a1bSJed Brown } 818c4762a1bSJed Brown } 819c4762a1bSJed Brown } 820c4762a1bSJed Brown } 821c4762a1bSJed Brown } 822c4762a1bSJed Brown 8239566063dSJacob Faibussowitsch PetscCall(THIDARestorePrm(info->da, &prm)); 824c4762a1bSJed Brown 8259566063dSJacob Faibussowitsch PetscCall(PRangeMinMax(&thi->eta, etamin, etamax)); 8269566063dSJacob Faibussowitsch PetscCall(PRangeMinMax(&thi->beta2, beta2min, beta2max)); 827c4762a1bSJed Brown PetscFunctionReturn(0); 828c4762a1bSJed Brown } 829c4762a1bSJed Brown 8309371c9d4SSatish Balay static PetscErrorCode THIMatrixStatistics(THI thi, Mat B, PetscViewer viewer) { 831c4762a1bSJed Brown PetscReal nrm; 832c4762a1bSJed Brown PetscInt m; 833c4762a1bSJed Brown PetscMPIInt rank; 834c4762a1bSJed Brown 835c4762a1bSJed Brown PetscFunctionBeginUser; 8369566063dSJacob Faibussowitsch PetscCall(MatNorm(B, NORM_FROBENIUS, &nrm)); 8379566063dSJacob Faibussowitsch PetscCall(MatGetSize(B, &m, 0)); 8389566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &rank)); 839dd400576SPatrick Sanan if (rank == 0) { 840c4762a1bSJed Brown PetscScalar val0, val2; 8419566063dSJacob Faibussowitsch PetscCall(MatGetValue(B, 0, 0, &val0)); 8429566063dSJacob Faibussowitsch PetscCall(MatGetValue(B, 2, 2, &val2)); 8439371c9d4SSatish Balay PetscCall(PetscViewerASCIIPrintf(viewer, "Matrix dim %" PetscInt_FMT " norm %8.2e (0,0) %8.2e (2,2) %8.2e %8.2e <= eta <= %8.2e %8.2e <= beta2 <= %8.2e\n", m, (double)nrm, (double)PetscRealPart(val0), (double)PetscRealPart(val2), 8449371c9d4SSatish Balay (double)thi->eta.cmin, (double)thi->eta.cmax, (double)thi->beta2.cmin, (double)thi->beta2.cmax)); 845c4762a1bSJed Brown } 846c4762a1bSJed Brown PetscFunctionReturn(0); 847c4762a1bSJed Brown } 848c4762a1bSJed Brown 8499371c9d4SSatish Balay static PetscErrorCode THISurfaceStatistics(DM da, Vec X, PetscReal *min, PetscReal *max, PetscReal *mean) { 850c4762a1bSJed Brown Node ***x; 851c4762a1bSJed Brown PetscInt i, j, xs, ys, zs, xm, ym, zm, mx, my, mz; 852c4762a1bSJed Brown PetscReal umin = 1e100, umax = -1e100; 853c4762a1bSJed Brown PetscScalar usum = 0.0, gusum; 854c4762a1bSJed Brown 855c4762a1bSJed Brown PetscFunctionBeginUser; 856c4762a1bSJed Brown *min = *max = *mean = 0; 8579566063dSJacob Faibussowitsch PetscCall(DMDAGetInfo(da, 0, &mz, &my, &mx, 0, 0, 0, 0, 0, 0, 0, 0, 0)); 8589566063dSJacob Faibussowitsch PetscCall(DMDAGetCorners(da, &zs, &ys, &xs, &zm, &ym, &xm)); 859e00437b9SBarry Smith PetscCheck(zs == 0 && zm == mz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected decomposition"); 8609566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArray(da, X, &x)); 861c4762a1bSJed Brown for (i = xs; i < xs + xm; i++) { 862c4762a1bSJed Brown for (j = ys; j < ys + ym; j++) { 863c4762a1bSJed Brown PetscReal u = PetscRealPart(x[i][j][zm - 1].u); 864c4762a1bSJed Brown RangeUpdate(&umin, &umax, u); 865c4762a1bSJed Brown usum += u; 866c4762a1bSJed Brown } 867c4762a1bSJed Brown } 8689566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArray(da, X, &x)); 8699566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(&umin, min, 1, MPIU_REAL, MPIU_MIN, PetscObjectComm((PetscObject)da))); 8709566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(&umax, max, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)da))); 8719566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(&usum, &gusum, 1, MPIU_SCALAR, MPIU_SUM, PetscObjectComm((PetscObject)da))); 872c4762a1bSJed Brown *mean = PetscRealPart(gusum) / (mx * my); 873c4762a1bSJed Brown PetscFunctionReturn(0); 874c4762a1bSJed Brown } 875c4762a1bSJed Brown 8769371c9d4SSatish Balay static PetscErrorCode THISolveStatistics(THI thi, SNES snes, PetscInt coarsened, const char name[]) { 877c4762a1bSJed Brown MPI_Comm comm; 878c4762a1bSJed Brown Vec X; 879c4762a1bSJed Brown DM dm; 880c4762a1bSJed Brown 881c4762a1bSJed Brown PetscFunctionBeginUser; 8829566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)thi, &comm)); 8839566063dSJacob Faibussowitsch PetscCall(SNESGetSolution(snes, &X)); 8849566063dSJacob Faibussowitsch PetscCall(SNESGetDM(snes, &dm)); 8859566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Solution statistics after solve: %s\n", name)); 886c4762a1bSJed Brown { 887c4762a1bSJed Brown PetscInt its, lits; 888c4762a1bSJed Brown SNESConvergedReason reason; 8899566063dSJacob Faibussowitsch PetscCall(SNESGetIterationNumber(snes, &its)); 8909566063dSJacob Faibussowitsch PetscCall(SNESGetConvergedReason(snes, &reason)); 8919566063dSJacob Faibussowitsch PetscCall(SNESGetLinearSolveIterations(snes, &lits)); 89263a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "%s: Number of SNES iterations = %" PetscInt_FMT ", total linear iterations = %" PetscInt_FMT "\n", SNESConvergedReasons[reason], its, lits)); 893c4762a1bSJed Brown } 894c4762a1bSJed Brown { 895c4762a1bSJed Brown PetscReal nrm2, tmin[3] = {1e100, 1e100, 1e100}, tmax[3] = {-1e100, -1e100, -1e100}, min[3], max[3]; 896c4762a1bSJed Brown PetscInt i, j, m; 897c4762a1bSJed Brown const PetscScalar *x; 8989566063dSJacob Faibussowitsch PetscCall(VecNorm(X, NORM_2, &nrm2)); 8999566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(X, &m)); 9009566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(X, &x)); 901c4762a1bSJed Brown for (i = 0; i < m; i += 2) { 902c4762a1bSJed Brown PetscReal u = PetscRealPart(x[i]), v = PetscRealPart(x[i + 1]), c = PetscSqrtReal(u * u + v * v); 903c4762a1bSJed Brown tmin[0] = PetscMin(u, tmin[0]); 904c4762a1bSJed Brown tmin[1] = PetscMin(v, tmin[1]); 905c4762a1bSJed Brown tmin[2] = PetscMin(c, tmin[2]); 906c4762a1bSJed Brown tmax[0] = PetscMax(u, tmax[0]); 907c4762a1bSJed Brown tmax[1] = PetscMax(v, tmax[1]); 908c4762a1bSJed Brown tmax[2] = PetscMax(c, tmax[2]); 909c4762a1bSJed Brown } 9109566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(X, &x)); 9119566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(tmin, min, 3, MPIU_REAL, MPIU_MIN, PetscObjectComm((PetscObject)thi))); 9129566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(tmax, max, 3, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)thi))); 913c4762a1bSJed Brown /* Dimensionalize to meters/year */ 914c4762a1bSJed Brown nrm2 *= thi->units->year / thi->units->meter; 915c4762a1bSJed Brown for (j = 0; j < 3; j++) { 916c4762a1bSJed Brown min[j] *= thi->units->year / thi->units->meter; 917c4762a1bSJed Brown max[j] *= thi->units->year / thi->units->meter; 918c4762a1bSJed Brown } 919c4762a1bSJed Brown if (min[0] == 0.0) min[0] = 0.0; 9209566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "|X|_2 %g %g <= u <= %g %g <= v <= %g %g <= c <= %g \n", (double)nrm2, (double)min[0], (double)max[0], (double)min[1], (double)max[1], (double)min[2], (double)max[2])); 921c4762a1bSJed Brown { 922c4762a1bSJed Brown PetscReal umin, umax, umean; 9239566063dSJacob Faibussowitsch PetscCall(THISurfaceStatistics(dm, X, &umin, &umax, &umean)); 924c4762a1bSJed Brown umin *= thi->units->year / thi->units->meter; 925c4762a1bSJed Brown umax *= thi->units->year / thi->units->meter; 926c4762a1bSJed Brown umean *= thi->units->year / thi->units->meter; 9279566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Surface statistics: u in [%12.6e, %12.6e] mean %12.6e\n", (double)umin, (double)umax, (double)umean)); 928c4762a1bSJed Brown } 929c4762a1bSJed Brown /* These values stay nondimensional */ 9309566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Global eta range %g to %g converged range %g to %g\n", (double)thi->eta.min, (double)thi->eta.max, (double)thi->eta.cmin, (double)thi->eta.cmax)); 9319566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Global beta2 range %g to %g converged range %g to %g\n", (double)thi->beta2.min, (double)thi->beta2.max, (double)thi->beta2.cmin, (double)thi->beta2.cmax)); 932c4762a1bSJed Brown } 933c4762a1bSJed Brown PetscFunctionReturn(0); 934c4762a1bSJed Brown } 935c4762a1bSJed Brown 9369371c9d4SSatish Balay static PetscErrorCode THIJacobianLocal_2D(DMDALocalInfo *info, Node **x, Mat J, Mat B, THI thi) { 937c4762a1bSJed Brown PetscInt xs, ys, xm, ym, i, j, q, l, ll; 938c4762a1bSJed Brown PetscReal hx, hy; 939c4762a1bSJed Brown PrmNode **prm; 940c4762a1bSJed Brown 941c4762a1bSJed Brown PetscFunctionBeginUser; 942c4762a1bSJed Brown xs = info->ys; 943c4762a1bSJed Brown ys = info->xs; 944c4762a1bSJed Brown xm = info->ym; 945c4762a1bSJed Brown ym = info->xm; 946c4762a1bSJed Brown hx = thi->Lx / info->my; 947c4762a1bSJed Brown hy = thi->Ly / info->mx; 948c4762a1bSJed Brown 9499566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(B)); 9509566063dSJacob Faibussowitsch PetscCall(THIDAGetPrm(info->da, &prm)); 951c4762a1bSJed Brown 952c4762a1bSJed Brown for (i = xs; i < xs + xm; i++) { 953c4762a1bSJed Brown for (j = ys; j < ys + ym; j++) { 954c4762a1bSJed Brown Node n[4]; 955c4762a1bSJed Brown PrmNode pn[4]; 956c4762a1bSJed Brown PetscScalar Ke[4 * 2][4 * 2]; 957c4762a1bSJed Brown QuadExtract(prm, i, j, pn); 958c4762a1bSJed Brown QuadExtract(x, i, j, n); 9599566063dSJacob Faibussowitsch PetscCall(PetscMemzero(Ke, sizeof(Ke))); 960c4762a1bSJed Brown for (q = 0; q < 4; q++) { 961c4762a1bSJed Brown PetscReal phi[4], dphi[4][2], jw, eta, deta, beta2, dbeta2; 962c4762a1bSJed Brown PetscScalar u, v, du[2], dv[2], h = 0, rbeta2 = 0; 963c4762a1bSJed Brown for (l = 0; l < 4; l++) { 964c4762a1bSJed Brown phi[l] = QuadQInterp[q][l]; 965c4762a1bSJed Brown dphi[l][0] = QuadQDeriv[q][l][0] * 2. / hx; 966c4762a1bSJed Brown dphi[l][1] = QuadQDeriv[q][l][1] * 2. / hy; 967c4762a1bSJed Brown h += phi[l] * pn[l].h; 968c4762a1bSJed Brown rbeta2 += phi[l] * pn[l].beta2; 969c4762a1bSJed Brown } 970c4762a1bSJed Brown jw = 0.25 * hx * hy / thi->rhog; /* rhog is only scaling */ 971c4762a1bSJed Brown PointwiseNonlinearity2D(thi, n, phi, dphi, &u, &v, du, dv, &eta, &deta); 972c4762a1bSJed Brown THIFriction(thi, PetscRealPart(rbeta2), PetscRealPart(u * u + v * v) / 2, &beta2, &dbeta2); 973c4762a1bSJed Brown for (l = 0; l < 4; l++) { 974c4762a1bSJed Brown const PetscReal pp = phi[l], *dp = dphi[l]; 975c4762a1bSJed Brown for (ll = 0; ll < 4; ll++) { 976c4762a1bSJed Brown const PetscReal ppl = phi[ll], *dpl = dphi[ll]; 977c4762a1bSJed Brown PetscScalar dgdu, dgdv; 978c4762a1bSJed Brown dgdu = 2. * du[0] * dpl[0] + dv[1] * dpl[0] + 0.5 * (du[1] + dv[0]) * dpl[1]; 979c4762a1bSJed Brown dgdv = 2. * dv[1] * dpl[1] + du[0] * dpl[1] + 0.5 * (du[1] + dv[0]) * dpl[0]; 980c4762a1bSJed Brown /* Picard part */ 981c4762a1bSJed Brown Ke[l * 2 + 0][ll * 2 + 0] += dp[0] * jw * eta * 4. * dpl[0] + dp[1] * jw * eta * dpl[1] + pp * jw * (beta2 / h) * ppl * thi->ssa_friction_scale; 982c4762a1bSJed Brown Ke[l * 2 + 0][ll * 2 + 1] += dp[0] * jw * eta * 2. * dpl[1] + dp[1] * jw * eta * dpl[0]; 983c4762a1bSJed Brown Ke[l * 2 + 1][ll * 2 + 0] += dp[1] * jw * eta * 2. * dpl[0] + dp[0] * jw * eta * dpl[1]; 984c4762a1bSJed Brown Ke[l * 2 + 1][ll * 2 + 1] += dp[1] * jw * eta * 4. * dpl[1] + dp[0] * jw * eta * dpl[0] + pp * jw * (beta2 / h) * ppl * thi->ssa_friction_scale; 985c4762a1bSJed Brown /* extra Newton terms */ 986c4762a1bSJed Brown Ke[l * 2 + 0][ll * 2 + 0] += dp[0] * jw * deta * dgdu * (4. * du[0] + 2. * dv[1]) + dp[1] * jw * deta * dgdu * (du[1] + dv[0]) + pp * jw * (dbeta2 / h) * u * u * ppl * thi->ssa_friction_scale; 987c4762a1bSJed Brown Ke[l * 2 + 0][ll * 2 + 1] += dp[0] * jw * deta * dgdv * (4. * du[0] + 2. * dv[1]) + dp[1] * jw * deta * dgdv * (du[1] + dv[0]) + pp * jw * (dbeta2 / h) * u * v * ppl * thi->ssa_friction_scale; 988c4762a1bSJed Brown Ke[l * 2 + 1][ll * 2 + 0] += dp[1] * jw * deta * dgdu * (4. * dv[1] + 2. * du[0]) + dp[0] * jw * deta * dgdu * (du[1] + dv[0]) + pp * jw * (dbeta2 / h) * v * u * ppl * thi->ssa_friction_scale; 989c4762a1bSJed Brown Ke[l * 2 + 1][ll * 2 + 1] += dp[1] * jw * deta * dgdv * (4. * dv[1] + 2. * du[0]) + dp[0] * jw * deta * dgdv * (du[1] + dv[0]) + pp * jw * (dbeta2 / h) * v * v * ppl * thi->ssa_friction_scale; 990c4762a1bSJed Brown } 991c4762a1bSJed Brown } 992c4762a1bSJed Brown } 993c4762a1bSJed Brown { 9949371c9d4SSatish Balay const MatStencil rc[4] = { 9959371c9d4SSatish Balay {0, i, j, 0}, 9969371c9d4SSatish Balay {0, i + 1, j, 0}, 9979371c9d4SSatish Balay {0, i + 1, j + 1, 0}, 9989371c9d4SSatish Balay {0, i, j + 1, 0} 9999371c9d4SSatish Balay }; 10009566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlockedStencil(B, 4, rc, 4, rc, &Ke[0][0], ADD_VALUES)); 1001c4762a1bSJed Brown } 1002c4762a1bSJed Brown } 1003c4762a1bSJed Brown } 10049566063dSJacob Faibussowitsch PetscCall(THIDARestorePrm(info->da, &prm)); 1005c4762a1bSJed Brown 10069566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 10079566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 10089566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_SYMMETRIC, PETSC_TRUE)); 10099566063dSJacob Faibussowitsch if (thi->verbose) PetscCall(THIMatrixStatistics(thi, B, PETSC_VIEWER_STDOUT_WORLD)); 1010c4762a1bSJed Brown PetscFunctionReturn(0); 1011c4762a1bSJed Brown } 1012c4762a1bSJed Brown 10139371c9d4SSatish Balay static PetscErrorCode THIJacobianLocal_3D(DMDALocalInfo *info, Node ***x, Mat B, THI thi, THIAssemblyMode amode) { 1014c4762a1bSJed Brown PetscInt xs, ys, xm, ym, zm, i, j, k, q, l, ll; 1015c4762a1bSJed Brown PetscReal hx, hy; 1016c4762a1bSJed Brown PrmNode **prm; 1017c4762a1bSJed Brown 1018c4762a1bSJed Brown PetscFunctionBeginUser; 1019c4762a1bSJed Brown xs = info->zs; 1020c4762a1bSJed Brown ys = info->ys; 1021c4762a1bSJed Brown xm = info->zm; 1022c4762a1bSJed Brown ym = info->ym; 1023c4762a1bSJed Brown zm = info->xm; 1024c4762a1bSJed Brown hx = thi->Lx / info->mz; 1025c4762a1bSJed Brown hy = thi->Ly / info->my; 1026c4762a1bSJed Brown 10279566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(B)); 10289566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_SUBSET_OFF_PROC_ENTRIES, PETSC_TRUE)); 10299566063dSJacob Faibussowitsch PetscCall(THIDAGetPrm(info->da, &prm)); 1030c4762a1bSJed Brown 1031c4762a1bSJed Brown for (i = xs; i < xs + xm; i++) { 1032c4762a1bSJed Brown for (j = ys; j < ys + ym; j++) { 1033c4762a1bSJed Brown PrmNode pn[4]; 1034c4762a1bSJed Brown QuadExtract(prm, i, j, pn); 1035c4762a1bSJed Brown for (k = 0; k < zm - 1; k++) { 1036c4762a1bSJed Brown Node n[8]; 1037c4762a1bSJed Brown PetscReal zn[8], etabase = 0; 1038c4762a1bSJed Brown PetscScalar Ke[8 * 2][8 * 2]; 1039c4762a1bSJed Brown PetscInt ls = 0; 1040c4762a1bSJed Brown 1041c4762a1bSJed Brown PrmHexGetZ(pn, k, zm, zn); 1042c4762a1bSJed Brown HexExtract(x, i, j, k, n); 10439566063dSJacob Faibussowitsch PetscCall(PetscMemzero(Ke, sizeof(Ke))); 1044c4762a1bSJed Brown if (thi->no_slip && k == 0) { 1045c4762a1bSJed Brown for (l = 0; l < 4; l++) n[l].u = n[l].v = 0; 1046c4762a1bSJed Brown ls = 4; 1047c4762a1bSJed Brown } 1048c4762a1bSJed Brown for (q = 0; q < 8; q++) { 1049c4762a1bSJed Brown PetscReal dz[3], phi[8], dphi[8][3], jw, eta, deta; 1050c4762a1bSJed Brown PetscScalar du[3], dv[3], u, v; 1051c4762a1bSJed Brown HexGrad(HexQDeriv[q], zn, dz); 1052c4762a1bSJed Brown HexComputeGeometry(q, hx, hy, dz, phi, dphi, &jw); 1053c4762a1bSJed Brown PointwiseNonlinearity(thi, n, phi, dphi, &u, &v, du, dv, &eta, &deta); 1054c4762a1bSJed Brown jw /= thi->rhog; /* residuals are scaled by this factor */ 1055c4762a1bSJed Brown if (q == 0) etabase = eta; 1056c4762a1bSJed Brown for (l = ls; l < 8; l++) { /* test functions */ 1057c4762a1bSJed Brown const PetscReal *PETSC_RESTRICT dp = dphi[l]; 1058c4762a1bSJed Brown #if USE_SSE2_KERNELS 1059c4762a1bSJed Brown /* gcc (up to my 4.5 snapshot) is really bad at hoisting intrinsics so we do it manually */ 10609371c9d4SSatish Balay __m128d p4 = _mm_set1_pd(4), p2 = _mm_set1_pd(2), p05 = _mm_set1_pd(0.5), p42 = _mm_setr_pd(4, 2), p24 = _mm_shuffle_pd(p42, p42, _MM_SHUFFLE2(0, 1)), du0 = _mm_set1_pd(du[0]), du1 = _mm_set1_pd(du[1]), du2 = _mm_set1_pd(du[2]), dv0 = _mm_set1_pd(dv[0]), dv1 = _mm_set1_pd(dv[1]), dv2 = _mm_set1_pd(dv[2]), jweta = _mm_set1_pd(jw * eta), jwdeta = _mm_set1_pd(jw * deta), dp0 = _mm_set1_pd(dp[0]), dp1 = _mm_set1_pd(dp[1]), dp2 = _mm_set1_pd(dp[2]), dp0jweta = _mm_mul_pd(dp0, jweta), dp1jweta = _mm_mul_pd(dp1, jweta), dp2jweta = _mm_mul_pd(dp2, jweta), p4du0p2dv1 = _mm_add_pd(_mm_mul_pd(p4, du0), _mm_mul_pd(p2, dv1)), /* 4 du0 + 2 dv1 */ 1061c4762a1bSJed Brown p4dv1p2du0 = _mm_add_pd(_mm_mul_pd(p4, dv1), _mm_mul_pd(p2, du0)), /* 4 dv1 + 2 du0 */ 1062c4762a1bSJed Brown pdu2dv2 = _mm_unpacklo_pd(du2, dv2), /* [du2, dv2] */ 1063c4762a1bSJed Brown du1pdv0 = _mm_add_pd(du1, dv0), /* du1 + dv0 */ 1064c4762a1bSJed Brown t1 = _mm_mul_pd(dp0, p4du0p2dv1), /* dp0 (4 du0 + 2 dv1) */ 1065c4762a1bSJed Brown t2 = _mm_mul_pd(dp1, p4dv1p2du0); /* dp1 (4 dv1 + 2 du0) */ 1066c4762a1bSJed Brown 1067c4762a1bSJed Brown #endif 1068c4762a1bSJed Brown #if defined COMPUTE_LOWER_TRIANGULAR /* The element matrices are always symmetric so computing the lower-triangular part is not necessary */ 1069c4762a1bSJed Brown for (ll = ls; ll < 8; ll++) { /* trial functions */ 1070c4762a1bSJed Brown #else 1071c4762a1bSJed Brown for (ll = l; ll < 8; ll++) { 1072c4762a1bSJed Brown #endif 1073c4762a1bSJed Brown const PetscReal *PETSC_RESTRICT dpl = dphi[ll]; 1074c4762a1bSJed Brown if (amode == THIASSEMBLY_TRIDIAGONAL && (l - ll) % 4) continue; /* these entries would not be inserted */ 1075c4762a1bSJed Brown #if !USE_SSE2_KERNELS 1076c4762a1bSJed Brown /* The analytic Jacobian in nice, easy-to-read form */ 1077c4762a1bSJed Brown { 1078c4762a1bSJed Brown PetscScalar dgdu, dgdv; 1079c4762a1bSJed Brown dgdu = 2. * du[0] * dpl[0] + dv[1] * dpl[0] + 0.5 * (du[1] + dv[0]) * dpl[1] + 0.5 * du[2] * dpl[2]; 1080c4762a1bSJed Brown dgdv = 2. * dv[1] * dpl[1] + du[0] * dpl[1] + 0.5 * (du[1] + dv[0]) * dpl[0] + 0.5 * dv[2] * dpl[2]; 1081c4762a1bSJed Brown /* Picard part */ 1082c4762a1bSJed Brown Ke[l * 2 + 0][ll * 2 + 0] += dp[0] * jw * eta * 4. * dpl[0] + dp[1] * jw * eta * dpl[1] + dp[2] * jw * eta * dpl[2]; 1083c4762a1bSJed Brown Ke[l * 2 + 0][ll * 2 + 1] += dp[0] * jw * eta * 2. * dpl[1] + dp[1] * jw * eta * dpl[0]; 1084c4762a1bSJed Brown Ke[l * 2 + 1][ll * 2 + 0] += dp[1] * jw * eta * 2. * dpl[0] + dp[0] * jw * eta * dpl[1]; 1085c4762a1bSJed Brown Ke[l * 2 + 1][ll * 2 + 1] += dp[1] * jw * eta * 4. * dpl[1] + dp[0] * jw * eta * dpl[0] + dp[2] * jw * eta * dpl[2]; 1086c4762a1bSJed Brown /* extra Newton terms */ 1087c4762a1bSJed Brown Ke[l * 2 + 0][ll * 2 + 0] += dp[0] * jw * deta * dgdu * (4. * du[0] + 2. * dv[1]) + dp[1] * jw * deta * dgdu * (du[1] + dv[0]) + dp[2] * jw * deta * dgdu * du[2]; 1088c4762a1bSJed Brown Ke[l * 2 + 0][ll * 2 + 1] += dp[0] * jw * deta * dgdv * (4. * du[0] + 2. * dv[1]) + dp[1] * jw * deta * dgdv * (du[1] + dv[0]) + dp[2] * jw * deta * dgdv * du[2]; 1089c4762a1bSJed Brown Ke[l * 2 + 1][ll * 2 + 0] += dp[1] * jw * deta * dgdu * (4. * dv[1] + 2. * du[0]) + dp[0] * jw * deta * dgdu * (du[1] + dv[0]) + dp[2] * jw * deta * dgdu * dv[2]; 1090c4762a1bSJed Brown Ke[l * 2 + 1][ll * 2 + 1] += dp[1] * jw * deta * dgdv * (4. * dv[1] + 2. * du[0]) + dp[0] * jw * deta * dgdv * (du[1] + dv[0]) + dp[2] * jw * deta * dgdv * dv[2]; 1091c4762a1bSJed Brown } 1092c4762a1bSJed Brown #else 1093c4762a1bSJed Brown /* This SSE2 code is an exact replica of above, but uses explicit packed instructions for some speed 1094c4762a1bSJed Brown * benefit. On my hardware, these intrinsics are almost twice as fast as above, reducing total assembly cost 1095c4762a1bSJed Brown * by 25 to 30 percent. */ 1096c4762a1bSJed Brown { 10979371c9d4SSatish Balay __m128d keu = _mm_loadu_pd(&Ke[l * 2 + 0][ll * 2 + 0]), kev = _mm_loadu_pd(&Ke[l * 2 + 1][ll * 2 + 0]), dpl01 = _mm_loadu_pd(&dpl[0]), dpl10 = _mm_shuffle_pd(dpl01, dpl01, _MM_SHUFFLE2(0, 1)), dpl2 = _mm_set_sd(dpl[2]), t0, t3, pdgduv; 10989371c9d4SSatish Balay keu = _mm_add_pd(keu, _mm_add_pd(_mm_mul_pd(_mm_mul_pd(dp0jweta, p42), dpl01), _mm_add_pd(_mm_mul_pd(dp1jweta, dpl10), _mm_mul_pd(dp2jweta, dpl2)))); 10999371c9d4SSatish Balay kev = _mm_add_pd(kev, _mm_add_pd(_mm_mul_pd(_mm_mul_pd(dp1jweta, p24), dpl01), _mm_add_pd(_mm_mul_pd(dp0jweta, dpl10), _mm_mul_pd(dp2jweta, _mm_shuffle_pd(dpl2, dpl2, _MM_SHUFFLE2(0, 1)))))); 11009371c9d4SSatish Balay pdgduv = _mm_mul_pd(p05, _mm_add_pd(_mm_add_pd(_mm_mul_pd(p42, _mm_mul_pd(du0, dpl01)), _mm_mul_pd(p24, _mm_mul_pd(dv1, dpl01))), _mm_add_pd(_mm_mul_pd(du1pdv0, dpl10), _mm_mul_pd(pdu2dv2, _mm_set1_pd(dpl[2]))))); /* [dgdu, dgdv] */ 1101c4762a1bSJed Brown t0 = _mm_mul_pd(jwdeta, pdgduv); /* jw deta [dgdu, dgdv] */ 1102c4762a1bSJed Brown t3 = _mm_mul_pd(t0, du1pdv0); /* t0 (du1 + dv0) */ 11039371c9d4SSatish Balay _mm_storeu_pd(&Ke[l * 2 + 0][ll * 2 + 0], _mm_add_pd(keu, _mm_add_pd(_mm_mul_pd(t1, t0), _mm_add_pd(_mm_mul_pd(dp1, t3), _mm_mul_pd(t0, _mm_mul_pd(dp2, du2)))))); 11049371c9d4SSatish Balay _mm_storeu_pd(&Ke[l * 2 + 1][ll * 2 + 0], _mm_add_pd(kev, _mm_add_pd(_mm_mul_pd(t2, t0), _mm_add_pd(_mm_mul_pd(dp0, t3), _mm_mul_pd(t0, _mm_mul_pd(dp2, dv2)))))); 1105c4762a1bSJed Brown } 1106c4762a1bSJed Brown #endif 1107c4762a1bSJed Brown } 1108c4762a1bSJed Brown } 1109c4762a1bSJed Brown } 1110c4762a1bSJed Brown if (k == 0) { /* on a bottom face */ 1111c4762a1bSJed Brown if (thi->no_slip) { 1112c4762a1bSJed Brown const PetscReal hz = PetscRealPart(pn[0].h) / (zm - 1); 1113c4762a1bSJed Brown const PetscScalar diagu = 2 * etabase / thi->rhog * (hx * hy / hz + hx * hz / hy + 4 * hy * hz / hx), diagv = 2 * etabase / thi->rhog * (hx * hy / hz + 4 * hx * hz / hy + hy * hz / hx); 1114c4762a1bSJed Brown Ke[0][0] = thi->dirichlet_scale * diagu; 1115c4762a1bSJed Brown Ke[1][1] = thi->dirichlet_scale * diagv; 1116c4762a1bSJed Brown } else { 1117c4762a1bSJed Brown for (q = 0; q < 4; q++) { 1118c4762a1bSJed Brown const PetscReal jw = 0.25 * hx * hy / thi->rhog, *phi = QuadQInterp[q]; 1119c4762a1bSJed Brown PetscScalar u = 0, v = 0, rbeta2 = 0; 1120c4762a1bSJed Brown PetscReal beta2, dbeta2; 1121c4762a1bSJed Brown for (l = 0; l < 4; l++) { 1122c4762a1bSJed Brown u += phi[l] * n[l].u; 1123c4762a1bSJed Brown v += phi[l] * n[l].v; 1124c4762a1bSJed Brown rbeta2 += phi[l] * pn[l].beta2; 1125c4762a1bSJed Brown } 1126c4762a1bSJed Brown THIFriction(thi, PetscRealPart(rbeta2), PetscRealPart(u * u + v * v) / 2, &beta2, &dbeta2); 1127c4762a1bSJed Brown for (l = 0; l < 4; l++) { 1128c4762a1bSJed Brown const PetscReal pp = phi[l]; 1129c4762a1bSJed Brown for (ll = 0; ll < 4; ll++) { 1130c4762a1bSJed Brown const PetscReal ppl = phi[ll]; 1131c4762a1bSJed Brown Ke[l * 2 + 0][ll * 2 + 0] += pp * jw * beta2 * ppl + pp * jw * dbeta2 * u * u * ppl; 1132c4762a1bSJed Brown Ke[l * 2 + 0][ll * 2 + 1] += pp * jw * dbeta2 * u * v * ppl; 1133c4762a1bSJed Brown Ke[l * 2 + 1][ll * 2 + 0] += pp * jw * dbeta2 * v * u * ppl; 1134c4762a1bSJed Brown Ke[l * 2 + 1][ll * 2 + 1] += pp * jw * beta2 * ppl + pp * jw * dbeta2 * v * v * ppl; 1135c4762a1bSJed Brown } 1136c4762a1bSJed Brown } 1137c4762a1bSJed Brown } 1138c4762a1bSJed Brown } 1139c4762a1bSJed Brown } 1140c4762a1bSJed Brown { 11419371c9d4SSatish Balay const MatStencil rc[8] = { 11429371c9d4SSatish Balay {i, j, k, 0}, 11439371c9d4SSatish Balay {i + 1, j, k, 0}, 11449371c9d4SSatish Balay {i + 1, j + 1, k, 0}, 11459371c9d4SSatish Balay {i, j + 1, k, 0}, 11469371c9d4SSatish Balay {i, j, k + 1, 0}, 11479371c9d4SSatish Balay {i + 1, j, k + 1, 0}, 11489371c9d4SSatish Balay {i + 1, j + 1, k + 1, 0}, 11499371c9d4SSatish Balay {i, j + 1, k + 1, 0} 11509371c9d4SSatish Balay }; 1151c4762a1bSJed Brown if (amode == THIASSEMBLY_TRIDIAGONAL) { 1152c4762a1bSJed Brown for (l = 0; l < 4; l++) { /* Copy out each of the blocks, discarding horizontal coupling */ 1153c4762a1bSJed Brown const PetscInt l4 = l + 4; 11549371c9d4SSatish Balay const MatStencil rcl[2] = { 11559371c9d4SSatish Balay {rc[l].k, rc[l].j, rc[l].i, 0}, 11569371c9d4SSatish Balay {rc[l4].k, rc[l4].j, rc[l4].i, 0} 11579371c9d4SSatish Balay }; 1158c4762a1bSJed Brown #if defined COMPUTE_LOWER_TRIANGULAR 11599371c9d4SSatish Balay const PetscScalar Kel[4][4] = { 11609371c9d4SSatish Balay {Ke[2 * l + 0][2 * l + 0], Ke[2 * l + 0][2 * l + 1], Ke[2 * l + 0][2 * l4 + 0], Ke[2 * l + 0][2 * l4 + 1] }, 1161c4762a1bSJed Brown {Ke[2 * l + 1][2 * l + 0], Ke[2 * l + 1][2 * l + 1], Ke[2 * l + 1][2 * l4 + 0], Ke[2 * l + 1][2 * l4 + 1] }, 1162c4762a1bSJed Brown {Ke[2 * l4 + 0][2 * l + 0], Ke[2 * l4 + 0][2 * l + 1], Ke[2 * l4 + 0][2 * l4 + 0], Ke[2 * l4 + 0][2 * l4 + 1]}, 11639371c9d4SSatish Balay {Ke[2 * l4 + 1][2 * l + 0], Ke[2 * l4 + 1][2 * l + 1], Ke[2 * l4 + 1][2 * l4 + 0], Ke[2 * l4 + 1][2 * l4 + 1]} 11649371c9d4SSatish Balay }; 1165c4762a1bSJed Brown #else 1166c4762a1bSJed Brown /* Same as above except for the lower-left block */ 11679371c9d4SSatish Balay const PetscScalar Kel[4][4] = { 11689371c9d4SSatish Balay {Ke[2 * l + 0][2 * l + 0], Ke[2 * l + 0][2 * l + 1], Ke[2 * l + 0][2 * l4 + 0], Ke[2 * l + 0][2 * l4 + 1] }, 1169c4762a1bSJed Brown {Ke[2 * l + 1][2 * l + 0], Ke[2 * l + 1][2 * l + 1], Ke[2 * l + 1][2 * l4 + 0], Ke[2 * l + 1][2 * l4 + 1] }, 1170c4762a1bSJed Brown {Ke[2 * l + 0][2 * l4 + 0], Ke[2 * l + 1][2 * l4 + 0], Ke[2 * l4 + 0][2 * l4 + 0], Ke[2 * l4 + 0][2 * l4 + 1]}, 11719371c9d4SSatish Balay {Ke[2 * l + 0][2 * l4 + 1], Ke[2 * l + 1][2 * l4 + 1], Ke[2 * l4 + 1][2 * l4 + 0], Ke[2 * l4 + 1][2 * l4 + 1]} 11729371c9d4SSatish Balay }; 1173c4762a1bSJed Brown #endif 11749566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlockedStencil(B, 2, rcl, 2, rcl, &Kel[0][0], ADD_VALUES)); 1175c4762a1bSJed Brown } 1176c4762a1bSJed Brown } else { 1177c4762a1bSJed Brown #if !defined COMPUTE_LOWER_TRIANGULAR /* fill in lower-triangular part, this is really cheap compared to computing the entries */ 1178c4762a1bSJed Brown for (l = 0; l < 8; l++) { 1179c4762a1bSJed Brown for (ll = l + 1; ll < 8; ll++) { 1180c4762a1bSJed Brown Ke[ll * 2 + 0][l * 2 + 0] = Ke[l * 2 + 0][ll * 2 + 0]; 1181c4762a1bSJed Brown Ke[ll * 2 + 1][l * 2 + 0] = Ke[l * 2 + 0][ll * 2 + 1]; 1182c4762a1bSJed Brown Ke[ll * 2 + 0][l * 2 + 1] = Ke[l * 2 + 1][ll * 2 + 0]; 1183c4762a1bSJed Brown Ke[ll * 2 + 1][l * 2 + 1] = Ke[l * 2 + 1][ll * 2 + 1]; 1184c4762a1bSJed Brown } 1185c4762a1bSJed Brown } 1186c4762a1bSJed Brown #endif 11879566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlockedStencil(B, 8, rc, 8, rc, &Ke[0][0], ADD_VALUES)); 1188c4762a1bSJed Brown } 1189c4762a1bSJed Brown } 1190c4762a1bSJed Brown } 1191c4762a1bSJed Brown } 1192c4762a1bSJed Brown } 11939566063dSJacob Faibussowitsch PetscCall(THIDARestorePrm(info->da, &prm)); 1194c4762a1bSJed Brown 11959566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 11969566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 11979566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_SYMMETRIC, PETSC_TRUE)); 11989566063dSJacob Faibussowitsch if (thi->verbose) PetscCall(THIMatrixStatistics(thi, B, PETSC_VIEWER_STDOUT_WORLD)); 1199c4762a1bSJed Brown PetscFunctionReturn(0); 1200c4762a1bSJed Brown } 1201c4762a1bSJed Brown 12029371c9d4SSatish Balay static PetscErrorCode THIJacobianLocal_3D_Full(DMDALocalInfo *info, Node ***x, Mat A, Mat B, THI thi) { 1203c4762a1bSJed Brown PetscFunctionBeginUser; 12049566063dSJacob Faibussowitsch PetscCall(THIJacobianLocal_3D(info, x, B, thi, THIASSEMBLY_FULL)); 1205c4762a1bSJed Brown PetscFunctionReturn(0); 1206c4762a1bSJed Brown } 1207c4762a1bSJed Brown 12089371c9d4SSatish Balay static PetscErrorCode THIJacobianLocal_3D_Tridiagonal(DMDALocalInfo *info, Node ***x, Mat A, Mat B, THI thi) { 1209c4762a1bSJed Brown PetscFunctionBeginUser; 12109566063dSJacob Faibussowitsch PetscCall(THIJacobianLocal_3D(info, x, B, thi, THIASSEMBLY_TRIDIAGONAL)); 1211c4762a1bSJed Brown PetscFunctionReturn(0); 1212c4762a1bSJed Brown } 1213c4762a1bSJed Brown 12149371c9d4SSatish Balay static PetscErrorCode DMRefineHierarchy_THI(DM dac0, PetscInt nlevels, DM hierarchy[]) { 1215c4762a1bSJed Brown THI thi; 1216c4762a1bSJed Brown PetscInt dim, M, N, m, n, s, dof; 1217c4762a1bSJed Brown DM dac, daf; 1218c4762a1bSJed Brown DMDAStencilType st; 1219c4762a1bSJed Brown DM_DA *ddf, *ddc; 1220c4762a1bSJed Brown 1221c4762a1bSJed Brown PetscFunctionBeginUser; 12229566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)dac0, "THI", (PetscObject *)&thi)); 122328b400f6SJacob Faibussowitsch PetscCheck(thi, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot refine this DMDA, missing composed THI instance"); 1224c4762a1bSJed Brown if (nlevels > 1) { 12259566063dSJacob Faibussowitsch PetscCall(DMRefineHierarchy(dac0, nlevels - 1, hierarchy)); 1226c4762a1bSJed Brown dac = hierarchy[nlevels - 2]; 1227c4762a1bSJed Brown } else { 1228c4762a1bSJed Brown dac = dac0; 1229c4762a1bSJed Brown } 12309566063dSJacob Faibussowitsch PetscCall(DMDAGetInfo(dac, &dim, &N, &M, 0, &n, &m, 0, &dof, &s, 0, 0, 0, &st)); 1231e00437b9SBarry Smith PetscCheck(dim == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "This function can only refine 2D DMDAs"); 1232c4762a1bSJed Brown 1233c4762a1bSJed Brown /* Creates a 3D DMDA with the same map-plane layout as the 2D one, with contiguous columns */ 12349566063dSJacob Faibussowitsch PetscCall(DMDACreate3d(PetscObjectComm((PetscObject)dac), DM_BOUNDARY_NONE, DM_BOUNDARY_PERIODIC, DM_BOUNDARY_PERIODIC, st, thi->zlevels, N, M, 1, n, m, dof, s, NULL, NULL, NULL, &daf)); 12359566063dSJacob Faibussowitsch PetscCall(DMSetUp(daf)); 1236c4762a1bSJed Brown 1237c4762a1bSJed Brown daf->ops->creatematrix = dac->ops->creatematrix; 1238c4762a1bSJed Brown daf->ops->createinterpolation = dac->ops->createinterpolation; 1239c4762a1bSJed Brown daf->ops->getcoloring = dac->ops->getcoloring; 1240c4762a1bSJed Brown ddf = (DM_DA *)daf->data; 1241c4762a1bSJed Brown ddc = (DM_DA *)dac->data; 1242c4762a1bSJed Brown ddf->interptype = ddc->interptype; 1243c4762a1bSJed Brown 12449566063dSJacob Faibussowitsch PetscCall(DMDASetFieldName(daf, 0, "x-velocity")); 12459566063dSJacob Faibussowitsch PetscCall(DMDASetFieldName(daf, 1, "y-velocity")); 1246c4762a1bSJed Brown 1247c4762a1bSJed Brown hierarchy[nlevels - 1] = daf; 1248c4762a1bSJed Brown PetscFunctionReturn(0); 1249c4762a1bSJed Brown } 1250c4762a1bSJed Brown 12519371c9d4SSatish Balay static PetscErrorCode DMCreateInterpolation_DA_THI(DM dac, DM daf, Mat *A, Vec *scale) { 1252c4762a1bSJed Brown PetscInt dim; 1253c4762a1bSJed Brown 1254c4762a1bSJed Brown PetscFunctionBeginUser; 1255c4762a1bSJed Brown PetscValidHeaderSpecific(dac, DM_CLASSID, 1); 1256c4762a1bSJed Brown PetscValidHeaderSpecific(daf, DM_CLASSID, 2); 1257c4762a1bSJed Brown PetscValidPointer(A, 3); 1258c4762a1bSJed Brown if (scale) PetscValidPointer(scale, 4); 12599566063dSJacob Faibussowitsch PetscCall(DMDAGetInfo(daf, &dim, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0)); 1260c4762a1bSJed Brown if (dim == 2) { 1261c4762a1bSJed Brown /* We are in the 2D problem and use normal DMDA interpolation */ 12629566063dSJacob Faibussowitsch PetscCall(DMCreateInterpolation(dac, daf, A, scale)); 1263c4762a1bSJed Brown } else { 1264c4762a1bSJed Brown PetscInt i, j, k, xs, ys, zs, xm, ym, zm, mx, my, mz, rstart, cstart; 1265c4762a1bSJed Brown Mat B; 1266c4762a1bSJed Brown 12679566063dSJacob Faibussowitsch PetscCall(DMDAGetInfo(daf, 0, &mz, &my, &mx, 0, 0, 0, 0, 0, 0, 0, 0, 0)); 12689566063dSJacob Faibussowitsch PetscCall(DMDAGetCorners(daf, &zs, &ys, &xs, &zm, &ym, &xm)); 126928b400f6SJacob Faibussowitsch PetscCheck(!zs, PETSC_COMM_SELF, PETSC_ERR_PLIB, "unexpected"); 12709566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)daf), &B)); 12719566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, xm * ym * zm, xm * ym, mx * my * mz, mx * my)); 1272c4762a1bSJed Brown 12739566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATAIJ)); 12749566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 1, NULL)); 12759566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 1, NULL, 0, NULL)); 12769566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(B, &rstart, NULL)); 12779566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(B, &cstart, NULL)); 1278c4762a1bSJed Brown for (i = xs; i < xs + xm; i++) { 1279c4762a1bSJed Brown for (j = ys; j < ys + ym; j++) { 1280c4762a1bSJed Brown for (k = zs; k < zs + zm; k++) { 1281c4762a1bSJed Brown PetscInt i2 = i * ym + j, i3 = i2 * zm + k; 1282c4762a1bSJed Brown PetscScalar val = ((k == 0 || k == mz - 1) ? 0.5 : 1.) / (mz - 1.); /* Integration using trapezoid rule */ 12839566063dSJacob Faibussowitsch PetscCall(MatSetValue(B, cstart + i3, rstart + i2, val, INSERT_VALUES)); 1284c4762a1bSJed Brown } 1285c4762a1bSJed Brown } 1286c4762a1bSJed Brown } 12879566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 12889566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 12899566063dSJacob Faibussowitsch PetscCall(MatCreateMAIJ(B, sizeof(Node) / sizeof(PetscScalar), A)); 12909566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 1291c4762a1bSJed Brown } 1292c4762a1bSJed Brown PetscFunctionReturn(0); 1293c4762a1bSJed Brown } 1294c4762a1bSJed Brown 12959371c9d4SSatish Balay static PetscErrorCode DMCreateMatrix_THI_Tridiagonal(DM da, Mat *J) { 1296c4762a1bSJed Brown Mat A; 1297c4762a1bSJed Brown PetscInt xm, ym, zm, dim, dof = 2, starts[3], dims[3]; 1298c4762a1bSJed Brown ISLocalToGlobalMapping ltog; 1299c4762a1bSJed Brown 1300c4762a1bSJed Brown PetscFunctionBeginUser; 13019566063dSJacob Faibussowitsch PetscCall(DMDAGetInfo(da, &dim, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0)); 1302e00437b9SBarry Smith PetscCheck(dim == 3, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Expected DMDA to be 3D"); 13039566063dSJacob Faibussowitsch PetscCall(DMDAGetCorners(da, 0, 0, 0, &zm, &ym, &xm)); 13049566063dSJacob Faibussowitsch PetscCall(DMGetLocalToGlobalMapping(da, <og)); 13059566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)da), &A)); 13069566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, dof * xm * ym * zm, dof * xm * ym * zm, PETSC_DETERMINE, PETSC_DETERMINE)); 13079566063dSJacob Faibussowitsch PetscCall(MatSetType(A, da->mattype)); 13089566063dSJacob Faibussowitsch PetscCall(MatSetFromOptions(A)); 13099566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(A, 3 * 2, NULL)); 13109566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(A, 3 * 2, NULL, 0, NULL)); 13119566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(A, 2, 3, NULL)); 13129566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(A, 2, 3, NULL, 0, NULL)); 13139566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(A, 2, 2, NULL)); 13149566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(A, 2, 2, NULL, 0, NULL)); 13159566063dSJacob Faibussowitsch PetscCall(MatSetLocalToGlobalMapping(A, ltog, ltog)); 13169566063dSJacob Faibussowitsch PetscCall(DMDAGetGhostCorners(da, &starts[0], &starts[1], &starts[2], &dims[0], &dims[1], &dims[2])); 13179566063dSJacob Faibussowitsch PetscCall(MatSetStencil(A, dim, dims, starts, dof)); 1318c4762a1bSJed Brown *J = A; 1319c4762a1bSJed Brown PetscFunctionReturn(0); 1320c4762a1bSJed Brown } 1321c4762a1bSJed Brown 13229371c9d4SSatish Balay static PetscErrorCode THIDAVecView_VTK_XML(THI thi, DM da, Vec X, const char filename[]) { 1323c4762a1bSJed Brown const PetscInt dof = 2; 1324c4762a1bSJed Brown Units units = thi->units; 1325c4762a1bSJed Brown MPI_Comm comm; 1326c4762a1bSJed Brown PetscViewer viewer; 1327c4762a1bSJed Brown PetscMPIInt rank, size, tag, nn, nmax; 1328c4762a1bSJed Brown PetscInt mx, my, mz, r, range[6]; 1329c4762a1bSJed Brown const PetscScalar *x; 1330c4762a1bSJed Brown 1331c4762a1bSJed Brown PetscFunctionBeginUser; 13329566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)thi, &comm)); 13339566063dSJacob Faibussowitsch PetscCall(DMDAGetInfo(da, 0, &mz, &my, &mx, 0, 0, 0, 0, 0, 0, 0, 0, 0)); 13349566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 13359566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 13369566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIOpen(comm, filename, &viewer)); 13379566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "<VTKFile type=\"StructuredGrid\" version=\"0.1\" byte_order=\"LittleEndian\">\n")); 133863a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " <StructuredGrid WholeExtent=\"%d %" PetscInt_FMT " %d %" PetscInt_FMT " %d %" PetscInt_FMT "\">\n", 0, mz - 1, 0, my - 1, 0, mx - 1)); 1339c4762a1bSJed Brown 13409566063dSJacob Faibussowitsch PetscCall(DMDAGetCorners(da, range, range + 1, range + 2, range + 3, range + 4, range + 5)); 13419566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(range[3] * range[4] * range[5] * dof, &nn)); 13429566063dSJacob Faibussowitsch PetscCallMPI(MPI_Reduce(&nn, &nmax, 1, MPI_INT, MPI_MAX, 0, comm)); 1343c4762a1bSJed Brown tag = ((PetscObject)viewer)->tag; 13449566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(X, &x)); 1345dd400576SPatrick Sanan if (rank == 0) { 1346c4762a1bSJed Brown PetscScalar *array; 13479566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nmax, &array)); 1348c4762a1bSJed Brown for (r = 0; r < size; r++) { 1349c4762a1bSJed Brown PetscInt i, j, k, xs, xm, ys, ym, zs, zm; 1350c4762a1bSJed Brown const PetscScalar *ptr; 1351c4762a1bSJed Brown MPI_Status status; 1352*48a46eb9SPierre Jolivet if (r) PetscCallMPI(MPI_Recv(range, 6, MPIU_INT, r, tag, comm, MPI_STATUS_IGNORE)); 13539371c9d4SSatish Balay zs = range[0]; 13549371c9d4SSatish Balay ys = range[1]; 13559371c9d4SSatish Balay xs = range[2]; 13569371c9d4SSatish Balay zm = range[3]; 13579371c9d4SSatish Balay ym = range[4]; 13589371c9d4SSatish Balay xm = range[5]; 1359e00437b9SBarry Smith PetscCheck(xm * ym * zm * dof <= nmax, PETSC_COMM_SELF, PETSC_ERR_PLIB, "should not happen"); 1360c4762a1bSJed Brown if (r) { 13619566063dSJacob Faibussowitsch PetscCallMPI(MPI_Recv(array, nmax, MPIU_SCALAR, r, tag, comm, &status)); 13629566063dSJacob Faibussowitsch PetscCallMPI(MPI_Get_count(&status, MPIU_SCALAR, &nn)); 1363e00437b9SBarry Smith PetscCheck(nn == xm * ym * zm * dof, PETSC_COMM_SELF, PETSC_ERR_PLIB, "should not happen"); 1364c4762a1bSJed Brown ptr = array; 1365c4762a1bSJed Brown } else ptr = x; 136663a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " <Piece Extent=\"%" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT "\">\n", zs, zs + zm - 1, ys, ys + ym - 1, xs, xs + xm - 1)); 1367c4762a1bSJed Brown 13689566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " <Points>\n")); 13699566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " <DataArray type=\"Float32\" NumberOfComponents=\"3\" format=\"ascii\">\n")); 1370c4762a1bSJed Brown for (i = xs; i < xs + xm; i++) { 1371c4762a1bSJed Brown for (j = ys; j < ys + ym; j++) { 1372c4762a1bSJed Brown for (k = zs; k < zs + zm; k++) { 1373c4762a1bSJed Brown PrmNode p; 1374c4762a1bSJed Brown PetscReal xx = thi->Lx * i / mx, yy = thi->Ly * j / my, zz; 1375c4762a1bSJed Brown thi->initialize(thi, xx, yy, &p); 1376c4762a1bSJed Brown zz = PetscRealPart(p.b) + PetscRealPart(p.h) * k / (mz - 1); 13779566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%f %f %f\n", (double)xx, (double)yy, (double)zz)); 1378c4762a1bSJed Brown } 1379c4762a1bSJed Brown } 1380c4762a1bSJed Brown } 13819566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " </DataArray>\n")); 13829566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " </Points>\n")); 1383c4762a1bSJed Brown 13849566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " <PointData>\n")); 13859566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " <DataArray type=\"Float32\" Name=\"velocity\" NumberOfComponents=\"3\" format=\"ascii\">\n")); 1386*48a46eb9SPierre Jolivet for (i = 0; i < nn; i += dof) PetscCall(PetscViewerASCIIPrintf(viewer, "%f %f %f\n", (double)(PetscRealPart(ptr[i]) * units->year / units->meter), (double)(PetscRealPart(ptr[i + 1]) * units->year / units->meter), 0.0)); 13879566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " </DataArray>\n")); 1388c4762a1bSJed Brown 13899566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " <DataArray type=\"Int32\" Name=\"rank\" NumberOfComponents=\"1\" format=\"ascii\">\n")); 1390*48a46eb9SPierre Jolivet for (i = 0; i < nn; i += dof) PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT "\n", r)); 13919566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " </DataArray>\n")); 13929566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " </PointData>\n")); 1393c4762a1bSJed Brown 13949566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " </Piece>\n")); 1395c4762a1bSJed Brown } 13969566063dSJacob Faibussowitsch PetscCall(PetscFree(array)); 1397c4762a1bSJed Brown } else { 13989566063dSJacob Faibussowitsch PetscCallMPI(MPI_Send(range, 6, MPIU_INT, 0, tag, comm)); 13999566063dSJacob Faibussowitsch PetscCallMPI(MPI_Send((PetscScalar *)x, nn, MPIU_SCALAR, 0, tag, comm)); 1400c4762a1bSJed Brown } 14019566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(X, &x)); 14029566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " </StructuredGrid>\n")); 14039566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "</VTKFile>\n")); 14049566063dSJacob Faibussowitsch PetscCall(PetscViewerDestroy(&viewer)); 1405c4762a1bSJed Brown PetscFunctionReturn(0); 1406c4762a1bSJed Brown } 1407c4762a1bSJed Brown 14089371c9d4SSatish Balay int main(int argc, char *argv[]) { 1409c4762a1bSJed Brown MPI_Comm comm; 1410c4762a1bSJed Brown THI thi; 1411c4762a1bSJed Brown DM da; 1412c4762a1bSJed Brown SNES snes; 1413c4762a1bSJed Brown 1414327415f7SBarry Smith PetscFunctionBeginUser; 14159566063dSJacob Faibussowitsch PetscCall(PetscInitialize(&argc, &argv, 0, help)); 1416c4762a1bSJed Brown comm = PETSC_COMM_WORLD; 1417c4762a1bSJed Brown 14189566063dSJacob Faibussowitsch PetscCall(THICreate(comm, &thi)); 1419c4762a1bSJed Brown { 1420c4762a1bSJed Brown PetscInt M = 3, N = 3, P = 2; 1421d0609cedSBarry Smith PetscOptionsBegin(comm, NULL, "Grid resolution options", ""); 1422c4762a1bSJed Brown { 14239566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-M", "Number of elements in x-direction on coarse level", "", M, &M, NULL)); 1424c4762a1bSJed Brown N = M; 14259566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-N", "Number of elements in y-direction on coarse level (if different from M)", "", N, &N, NULL)); 1426c4762a1bSJed Brown if (thi->coarse2d) { 14279566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-zlevels", "Number of elements in z-direction on fine level", "", thi->zlevels, &thi->zlevels, NULL)); 1428c4762a1bSJed Brown } else { 14299566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-P", "Number of elements in z-direction on coarse level", "", P, &P, NULL)); 1430c4762a1bSJed Brown } 1431c4762a1bSJed Brown } 1432d0609cedSBarry Smith PetscOptionsEnd(); 1433c4762a1bSJed Brown if (thi->coarse2d) { 14349566063dSJacob Faibussowitsch PetscCall(DMDACreate2d(comm, DM_BOUNDARY_PERIODIC, DM_BOUNDARY_PERIODIC, DMDA_STENCIL_BOX, N, M, PETSC_DETERMINE, PETSC_DETERMINE, sizeof(Node) / sizeof(PetscScalar), 1, 0, 0, &da)); 14359566063dSJacob Faibussowitsch PetscCall(DMSetFromOptions(da)); 14369566063dSJacob Faibussowitsch PetscCall(DMSetUp(da)); 1437c4762a1bSJed Brown da->ops->refinehierarchy = DMRefineHierarchy_THI; 1438c4762a1bSJed Brown da->ops->createinterpolation = DMCreateInterpolation_DA_THI; 1439c4762a1bSJed Brown 14409566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)da, "THI", (PetscObject)thi)); 1441c4762a1bSJed Brown } else { 14429566063dSJacob Faibussowitsch PetscCall(DMDACreate3d(comm, DM_BOUNDARY_NONE, DM_BOUNDARY_PERIODIC, DM_BOUNDARY_PERIODIC, DMDA_STENCIL_BOX, P, N, M, 1, PETSC_DETERMINE, PETSC_DETERMINE, sizeof(Node) / sizeof(PetscScalar), 1, 0, 0, 0, &da)); 14439566063dSJacob Faibussowitsch PetscCall(DMSetFromOptions(da)); 14449566063dSJacob Faibussowitsch PetscCall(DMSetUp(da)); 1445c4762a1bSJed Brown } 14469566063dSJacob Faibussowitsch PetscCall(DMDASetFieldName(da, 0, "x-velocity")); 14479566063dSJacob Faibussowitsch PetscCall(DMDASetFieldName(da, 1, "y-velocity")); 1448c4762a1bSJed Brown } 14499566063dSJacob Faibussowitsch PetscCall(THISetUpDM(thi, da)); 1450c4762a1bSJed Brown if (thi->tridiagonal) da->ops->creatematrix = DMCreateMatrix_THI_Tridiagonal; 1451c4762a1bSJed Brown 1452c4762a1bSJed Brown { /* Set the fine level matrix type if -da_refine */ 1453c4762a1bSJed Brown PetscInt rlevel, clevel; 14549566063dSJacob Faibussowitsch PetscCall(DMGetRefineLevel(da, &rlevel)); 14559566063dSJacob Faibussowitsch PetscCall(DMGetCoarsenLevel(da, &clevel)); 14569566063dSJacob Faibussowitsch if (rlevel - clevel > 0) PetscCall(DMSetMatType(da, thi->mattype)); 1457c4762a1bSJed Brown } 1458c4762a1bSJed Brown 14599566063dSJacob Faibussowitsch PetscCall(DMDASNESSetFunctionLocal(da, ADD_VALUES, (DMDASNESFunction)THIFunctionLocal, thi)); 1460c4762a1bSJed Brown if (thi->tridiagonal) { 14619566063dSJacob Faibussowitsch PetscCall(DMDASNESSetJacobianLocal(da, (DMDASNESJacobian)THIJacobianLocal_3D_Tridiagonal, thi)); 1462c4762a1bSJed Brown } else { 14639566063dSJacob Faibussowitsch PetscCall(DMDASNESSetJacobianLocal(da, (DMDASNESJacobian)THIJacobianLocal_3D_Full, thi)); 1464c4762a1bSJed Brown } 14659566063dSJacob Faibussowitsch PetscCall(DMCoarsenHookAdd(da, DMCoarsenHook_THI, NULL, thi)); 14669566063dSJacob Faibussowitsch PetscCall(DMRefineHookAdd(da, DMRefineHook_THI, NULL, thi)); 1467c4762a1bSJed Brown 14689566063dSJacob Faibussowitsch PetscCall(DMSetApplicationContext(da, thi)); 1469c4762a1bSJed Brown 14709566063dSJacob Faibussowitsch PetscCall(SNESCreate(comm, &snes)); 14719566063dSJacob Faibussowitsch PetscCall(SNESSetDM(snes, da)); 14729566063dSJacob Faibussowitsch PetscCall(DMDestroy(&da)); 14739566063dSJacob Faibussowitsch PetscCall(SNESSetComputeInitialGuess(snes, THIInitial, NULL)); 14749566063dSJacob Faibussowitsch PetscCall(SNESSetFromOptions(snes)); 1475c4762a1bSJed Brown 14769566063dSJacob Faibussowitsch PetscCall(SNESSolve(snes, NULL, NULL)); 1477c4762a1bSJed Brown 14789566063dSJacob Faibussowitsch PetscCall(THISolveStatistics(thi, snes, 0, "Full")); 1479c4762a1bSJed Brown 1480c4762a1bSJed Brown { 1481c4762a1bSJed Brown PetscBool flg; 1482c4762a1bSJed Brown char filename[PETSC_MAX_PATH_LEN] = ""; 14839566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetString(NULL, NULL, "-o", filename, sizeof(filename), &flg)); 1484c4762a1bSJed Brown if (flg) { 1485c4762a1bSJed Brown Vec X; 1486c4762a1bSJed Brown DM dm; 14879566063dSJacob Faibussowitsch PetscCall(SNESGetSolution(snes, &X)); 14889566063dSJacob Faibussowitsch PetscCall(SNESGetDM(snes, &dm)); 14899566063dSJacob Faibussowitsch PetscCall(THIDAVecView_VTK_XML(thi, dm, X, filename)); 1490c4762a1bSJed Brown } 1491c4762a1bSJed Brown } 1492c4762a1bSJed Brown 14939566063dSJacob Faibussowitsch PetscCall(DMDestroy(&da)); 14949566063dSJacob Faibussowitsch PetscCall(SNESDestroy(&snes)); 14959566063dSJacob Faibussowitsch PetscCall(THIDestroy(&thi)); 14969566063dSJacob Faibussowitsch PetscCall(PetscFinalize()); 1497b122ec5aSJacob Faibussowitsch return 0; 1498c4762a1bSJed Brown } 1499c4762a1bSJed Brown 1500c4762a1bSJed Brown /*TEST 1501c4762a1bSJed Brown 1502c4762a1bSJed Brown build: 1503f56ea12dSJed Brown requires: !single 1504c4762a1bSJed Brown 1505c4762a1bSJed Brown test: 1506c4762a1bSJed Brown args: -M 6 -P 4 -da_refine 1 -snes_monitor_short -snes_converged_reason -ksp_monitor_short -ksp_converged_reason -thi_mat_type sbaij -ksp_type fgmres -pc_type mg -pc_mg_type full -mg_levels_ksp_type gmres -mg_levels_ksp_max_it 1 -mg_levels_pc_type icc 1507c4762a1bSJed Brown 1508c4762a1bSJed Brown test: 1509c4762a1bSJed Brown suffix: 2 1510c4762a1bSJed Brown nsize: 2 1511c4762a1bSJed Brown args: -M 6 -P 4 -thi_hom z -snes_monitor_short -snes_converged_reason -ksp_monitor_short -ksp_converged_reason -thi_mat_type sbaij -ksp_type fgmres -pc_type mg -pc_mg_type full -mg_levels_ksp_type gmres -mg_levels_ksp_max_it 1 -mg_levels_pc_type asm -mg_levels_pc_asm_blocks 6 -mg_levels_0_pc_type redundant -snes_grid_sequence 1 -mat_partitioning_type current -ksp_atol -1 1512c4762a1bSJed Brown 1513c4762a1bSJed Brown test: 1514c4762a1bSJed Brown suffix: 3 1515c4762a1bSJed Brown nsize: 3 1516c4762a1bSJed Brown args: -M 7 -P 4 -thi_hom z -da_refine 1 -snes_monitor_short -snes_converged_reason -ksp_monitor_short -ksp_converged_reason -thi_mat_type baij -ksp_type fgmres -pc_type mg -pc_mg_type full -mg_levels_pc_asm_type restrict -mg_levels_pc_type asm -mg_levels_pc_asm_blocks 9 -mg_levels_ksp_type gmres -mg_levels_ksp_max_it 1 -mat_partitioning_type current 1517c4762a1bSJed Brown 1518c4762a1bSJed Brown test: 1519c4762a1bSJed Brown suffix: 4 1520c4762a1bSJed Brown nsize: 6 1521c4762a1bSJed Brown args: -M 4 -P 2 -da_refine_hierarchy_x 1,1,3 -da_refine_hierarchy_y 2,2,1 -da_refine_hierarchy_z 2,2,1 -snes_grid_sequence 3 -ksp_converged_reason -ksp_type fgmres -ksp_rtol 1e-2 -pc_type mg -mg_levels_ksp_type gmres -mg_levels_ksp_max_it 1 -mg_levels_pc_type bjacobi -mg_levels_1_sub_pc_type cholesky -pc_mg_type multiplicative -snes_converged_reason -snes_stol 1e-12 -thi_L 80e3 -thi_alpha 0.05 -thi_friction_m 1 -thi_hom x -snes_view -mg_levels_0_pc_type redundant -mg_levels_0_ksp_type preonly -ksp_atol -1 1522c4762a1bSJed Brown 1523c4762a1bSJed Brown test: 1524c4762a1bSJed Brown suffix: 5 1525c4762a1bSJed Brown nsize: 6 1526c4762a1bSJed Brown args: -M 12 -P 5 -snes_monitor_short -ksp_converged_reason -pc_type asm -pc_asm_type restrict -dm_mat_type {{aij baij sbaij}} 1527c4762a1bSJed Brown 1528c4762a1bSJed Brown TEST*/ 1529