1c4762a1bSJed Brown static char help[] = "Bratu nonlinear PDE in 2d.\n\ 2c4762a1bSJed Brown We solve the Bratu (SFI - solid fuel ignition) problem in a 2D rectangular\n\ 3c4762a1bSJed Brown domain, using distributed arrays (DMDAs) to partition the parallel grid.\n\ 4c4762a1bSJed Brown The command line options include:\n\ 5c4762a1bSJed Brown -par <parameter>, where <parameter> indicates the problem's nonlinearity\n\ 6c4762a1bSJed Brown problem SFI: <parameter> = Bratu parameter (0 <= par <= 6.81)\n\n\ 7c4762a1bSJed Brown -m_par/n_par <parameter>, where <parameter> indicates an integer\n \ 8c4762a1bSJed Brown that MMS3 will be evaluated with 2^m_par, 2^n_par"; 9c4762a1bSJed Brown 10c4762a1bSJed Brown /*T 11c4762a1bSJed Brown Concepts: SNES^parallel Bratu example 12c4762a1bSJed Brown Concepts: DMDA^using distributed arrays; 13c4762a1bSJed Brown Concepts: IS coloirng types; 14c4762a1bSJed Brown Processors: n 15c4762a1bSJed Brown T*/ 16c4762a1bSJed Brown 17c4762a1bSJed Brown /* ------------------------------------------------------------------------ 18c4762a1bSJed Brown 19c4762a1bSJed Brown Solid Fuel Ignition (SFI) problem. This problem is modeled by 20c4762a1bSJed Brown the partial differential equation 21c4762a1bSJed Brown 22c4762a1bSJed Brown -Laplacian u - lambda*exp(u) = 0, 0 < x,y < 1, 23c4762a1bSJed Brown 24c4762a1bSJed Brown with boundary conditions 25c4762a1bSJed Brown 26c4762a1bSJed Brown u = 0 for x = 0, x = 1, y = 0, y = 1. 27c4762a1bSJed Brown 28c4762a1bSJed Brown A finite difference approximation with the usual 5-point stencil 29c4762a1bSJed Brown is used to discretize the boundary value problem to obtain a nonlinear 30c4762a1bSJed Brown system of equations. 31c4762a1bSJed Brown 32c4762a1bSJed Brown This example shows how geometric multigrid can be run transparently with a nonlinear solver so long 33c4762a1bSJed Brown as SNESSetDM() is provided. Example usage 34c4762a1bSJed Brown 35c4762a1bSJed Brown ./ex5 -pc_type mg -ksp_monitor -snes_view -pc_mg_levels 3 -pc_mg_galerkin pmat -da_grid_x 17 -da_grid_y 17 36c4762a1bSJed Brown -mg_levels_ksp_monitor -snes_monitor -mg_levels_pc_type sor -pc_mg_type full 37c4762a1bSJed Brown 38c4762a1bSJed Brown or to run with grid sequencing on the nonlinear problem (note that you do not need to provide the number of 39c4762a1bSJed Brown multigrid levels, it will be determined automatically based on the number of refinements done) 40c4762a1bSJed Brown 41c4762a1bSJed Brown ./ex5 -pc_type mg -ksp_monitor -snes_view -pc_mg_galerkin pmat -snes_grid_sequence 3 42c4762a1bSJed Brown -mg_levels_ksp_monitor -snes_monitor -mg_levels_pc_type sor -pc_mg_type full 43c4762a1bSJed Brown 44c4762a1bSJed Brown ------------------------------------------------------------------------- */ 45c4762a1bSJed Brown 46c4762a1bSJed Brown /* 47c4762a1bSJed Brown Include "petscdmda.h" so that we can use distributed arrays (DMDAs). 48c4762a1bSJed Brown Include "petscsnes.h" so that we can use SNES solvers. Note that this 49c4762a1bSJed Brown */ 50c4762a1bSJed Brown #include <petscdm.h> 51c4762a1bSJed Brown #include <petscdmda.h> 52c4762a1bSJed Brown #include <petscsnes.h> 53c4762a1bSJed Brown #include <petscmatlab.h> 54c4762a1bSJed Brown #include <petsc/private/snesimpl.h> /* For SNES_Solve event */ 55c4762a1bSJed Brown 56c4762a1bSJed Brown /* 57c4762a1bSJed Brown User-defined application context - contains data needed by the 58c4762a1bSJed Brown application-provided call-back routines, FormJacobianLocal() and 59c4762a1bSJed Brown FormFunctionLocal(). 60c4762a1bSJed Brown */ 61c4762a1bSJed Brown typedef struct AppCtx AppCtx; 62c4762a1bSJed Brown struct AppCtx { 63c4762a1bSJed Brown PetscReal param; /* test problem parameter */ 64c4762a1bSJed Brown PetscInt m,n; /* MMS3 parameters */ 65c4762a1bSJed Brown PetscErrorCode (*mms_solution)(AppCtx*,const DMDACoor2d*,PetscScalar*); 66c4762a1bSJed Brown PetscErrorCode (*mms_forcing)(AppCtx*,const DMDACoor2d*,PetscScalar*); 67c4762a1bSJed Brown }; 68c4762a1bSJed Brown 69c4762a1bSJed Brown /* 70c4762a1bSJed Brown User-defined routines 71c4762a1bSJed Brown */ 72c4762a1bSJed Brown extern PetscErrorCode FormInitialGuess(DM,AppCtx*,Vec); 73c4762a1bSJed Brown extern PetscErrorCode FormFunctionLocal(DMDALocalInfo*,PetscScalar**,PetscScalar**,AppCtx*); 74c4762a1bSJed Brown extern PetscErrorCode FormExactSolution(DM,AppCtx*,Vec); 75c4762a1bSJed Brown extern PetscErrorCode ZeroBCSolution(AppCtx*,const DMDACoor2d*,PetscScalar*); 76c4762a1bSJed Brown extern PetscErrorCode MMSSolution1(AppCtx*,const DMDACoor2d*,PetscScalar*); 77c4762a1bSJed Brown extern PetscErrorCode MMSForcing1(AppCtx*,const DMDACoor2d*,PetscScalar*); 78c4762a1bSJed Brown extern PetscErrorCode MMSSolution2(AppCtx*,const DMDACoor2d*,PetscScalar*); 79c4762a1bSJed Brown extern PetscErrorCode MMSForcing2(AppCtx*,const DMDACoor2d*,PetscScalar*); 80c4762a1bSJed Brown extern PetscErrorCode MMSSolution3(AppCtx*,const DMDACoor2d*,PetscScalar*); 81c4762a1bSJed Brown extern PetscErrorCode MMSForcing3(AppCtx*,const DMDACoor2d*,PetscScalar*); 82c4762a1bSJed Brown extern PetscErrorCode MMSSolution4(AppCtx*,const DMDACoor2d*,PetscScalar*); 83c4762a1bSJed Brown extern PetscErrorCode MMSForcing4(AppCtx*,const DMDACoor2d*,PetscScalar*); 84c4762a1bSJed Brown extern PetscErrorCode FormJacobianLocal(DMDALocalInfo*,PetscScalar**,Mat,Mat,AppCtx*); 85c4762a1bSJed Brown extern PetscErrorCode FormObjectiveLocal(DMDALocalInfo*,PetscScalar**,PetscReal*,AppCtx*); 86c4762a1bSJed Brown extern PetscErrorCode FormFunctionMatlab(SNES,Vec,Vec,void*); 87c4762a1bSJed Brown extern PetscErrorCode NonlinearGS(SNES,Vec,Vec,void*); 88c4762a1bSJed Brown 89c4762a1bSJed Brown int main(int argc,char **argv) 90c4762a1bSJed Brown { 91c4762a1bSJed Brown SNES snes; /* nonlinear solver */ 92c4762a1bSJed Brown Vec x; /* solution vector */ 93c4762a1bSJed Brown AppCtx user; /* user-defined work context */ 94c4762a1bSJed Brown PetscInt its; /* iterations for convergence */ 95c4762a1bSJed Brown PetscErrorCode ierr; 96c4762a1bSJed Brown PetscReal bratu_lambda_max = 6.81; 97c4762a1bSJed Brown PetscReal bratu_lambda_min = 0.; 98c4762a1bSJed Brown PetscInt MMS = 0; 99c4762a1bSJed Brown PetscBool flg = PETSC_FALSE; 100c4762a1bSJed Brown DM da; 101c4762a1bSJed Brown Vec r = NULL; 102c4762a1bSJed Brown KSP ksp; 103c4762a1bSJed Brown PetscInt lits,slits; 104c4762a1bSJed Brown 105c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 106c4762a1bSJed Brown Initialize program 107c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 108c4762a1bSJed Brown 109c4762a1bSJed Brown ierr = PetscInitialize(&argc,&argv,(char*)0,help);if (ierr) return ierr; 110c4762a1bSJed Brown 111c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 112c4762a1bSJed Brown Initialize problem parameters 113c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 114c4762a1bSJed Brown user.param = 6.0; 115c4762a1bSJed Brown ierr = PetscOptionsGetReal(NULL,NULL,"-par",&user.param,NULL);CHKERRQ(ierr); 116d8185827SBarry Smith if (user.param > bratu_lambda_max || user.param < bratu_lambda_min) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Lambda, %g, is out of range, [%g, %g]", user.param, bratu_lambda_min, bratu_lambda_max); 117c4762a1bSJed Brown ierr = PetscOptionsGetInt(NULL,NULL,"-mms",&MMS,NULL);CHKERRQ(ierr); 118c4762a1bSJed Brown if (MMS == 3) { 119c4762a1bSJed Brown PetscInt mPar = 2, nPar = 1; 120c4762a1bSJed Brown ierr = PetscOptionsGetInt(NULL,NULL,"-m_par",&mPar,NULL);CHKERRQ(ierr); 121c4762a1bSJed Brown ierr = PetscOptionsGetInt(NULL,NULL,"-n_par",&nPar,NULL);CHKERRQ(ierr); 122c4762a1bSJed Brown user.m = PetscPowInt(2,mPar); 123c4762a1bSJed Brown user.n = PetscPowInt(2,nPar); 124c4762a1bSJed Brown } 125c4762a1bSJed Brown 126c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 127c4762a1bSJed Brown Create nonlinear solver context 128c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 129c4762a1bSJed Brown ierr = SNESCreate(PETSC_COMM_WORLD,&snes);CHKERRQ(ierr); 130c4762a1bSJed Brown ierr = SNESSetCountersReset(snes,PETSC_FALSE);CHKERRQ(ierr); 131c4762a1bSJed Brown ierr = SNESSetNGS(snes, NonlinearGS, NULL);CHKERRQ(ierr); 132c4762a1bSJed Brown 133c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 134c4762a1bSJed Brown Create distributed array (DMDA) to manage parallel grid and vectors 135c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 136c4762a1bSJed Brown ierr = DMDACreate2d(PETSC_COMM_WORLD, DM_BOUNDARY_NONE, DM_BOUNDARY_NONE,DMDA_STENCIL_STAR,4,4,PETSC_DECIDE,PETSC_DECIDE,1,1,NULL,NULL,&da);CHKERRQ(ierr); 137c4762a1bSJed Brown ierr = DMSetFromOptions(da);CHKERRQ(ierr); 138c4762a1bSJed Brown ierr = DMSetUp(da);CHKERRQ(ierr); 139c4762a1bSJed Brown ierr = DMDASetUniformCoordinates(da, 0.0, 1.0, 0.0, 1.0, 0.0, 1.0);CHKERRQ(ierr); 140c4762a1bSJed Brown ierr = DMSetApplicationContext(da,&user);CHKERRQ(ierr); 141c4762a1bSJed Brown ierr = SNESSetDM(snes,da);CHKERRQ(ierr); 142c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 143c4762a1bSJed Brown Extract global vectors from DMDA; then duplicate for remaining 144c4762a1bSJed Brown vectors that are the same types 145c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 146c4762a1bSJed Brown ierr = DMCreateGlobalVector(da,&x);CHKERRQ(ierr); 147c4762a1bSJed Brown 148c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 149c4762a1bSJed Brown Set local function evaluation routine 150c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 151c4762a1bSJed Brown user.mms_solution = ZeroBCSolution; 152c4762a1bSJed Brown switch (MMS) { 153c4762a1bSJed Brown case 0: user.mms_solution = NULL; user.mms_forcing = NULL;CHKERRQ(ierr); 154c4762a1bSJed Brown case 1: user.mms_solution = MMSSolution1; user.mms_forcing = MMSForcing1; break; 155c4762a1bSJed Brown case 2: user.mms_solution = MMSSolution2; user.mms_forcing = MMSForcing2; break; 156c4762a1bSJed Brown case 3: user.mms_solution = MMSSolution3; user.mms_forcing = MMSForcing3; break; 157c4762a1bSJed Brown case 4: user.mms_solution = MMSSolution4; user.mms_forcing = MMSForcing4; break; 158c4762a1bSJed Brown default: SETERRQ1(PETSC_COMM_WORLD,PETSC_ERR_USER,"Unknown MMS type %d",MMS); 159c4762a1bSJed Brown } 160c4762a1bSJed Brown ierr = DMDASNESSetFunctionLocal(da,INSERT_VALUES,(DMDASNESFunction)FormFunctionLocal,&user);CHKERRQ(ierr); 161c4762a1bSJed Brown ierr = PetscOptionsGetBool(NULL,NULL,"-fd",&flg,NULL);CHKERRQ(ierr); 162c4762a1bSJed Brown if (!flg) { 163c4762a1bSJed Brown ierr = DMDASNESSetJacobianLocal(da,(DMDASNESJacobian)FormJacobianLocal,&user);CHKERRQ(ierr); 164c4762a1bSJed Brown } 165c4762a1bSJed Brown 166c4762a1bSJed Brown ierr = PetscOptionsGetBool(NULL,NULL,"-obj",&flg,NULL);CHKERRQ(ierr); 167c4762a1bSJed Brown if (flg) { 168c4762a1bSJed Brown ierr = DMDASNESSetObjectiveLocal(da,(DMDASNESObjective)FormObjectiveLocal,&user);CHKERRQ(ierr); 169c4762a1bSJed Brown } 170c4762a1bSJed Brown 1714e1ad211SJed Brown if (PetscDefined(HAVE_MATLAB_ENGINE)) { 1724e1ad211SJed Brown PetscBool matlab_function = PETSC_FALSE; 173c4762a1bSJed Brown ierr = PetscOptionsGetBool(NULL,NULL,"-matlab_function",&matlab_function,0);CHKERRQ(ierr); 174c4762a1bSJed Brown if (matlab_function) { 175c4762a1bSJed Brown ierr = VecDuplicate(x,&r);CHKERRQ(ierr); 176c4762a1bSJed Brown ierr = SNESSetFunction(snes,r,FormFunctionMatlab,&user);CHKERRQ(ierr); 177c4762a1bSJed Brown } 1784e1ad211SJed Brown } 179c4762a1bSJed Brown 180c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 181c4762a1bSJed Brown Customize nonlinear solver; set runtime options 182c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 183c4762a1bSJed Brown ierr = SNESSetFromOptions(snes);CHKERRQ(ierr); 184c4762a1bSJed Brown 185c4762a1bSJed Brown ierr = FormInitialGuess(da,&user,x);CHKERRQ(ierr); 186c4762a1bSJed Brown 187c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 188c4762a1bSJed Brown Solve nonlinear system 189c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 190c4762a1bSJed Brown ierr = SNESSolve(snes,NULL,x);CHKERRQ(ierr); 191c4762a1bSJed Brown ierr = SNESGetIterationNumber(snes,&its);CHKERRQ(ierr); 192c4762a1bSJed Brown 193c4762a1bSJed Brown ierr = SNESGetLinearSolveIterations(snes,&slits);CHKERRQ(ierr); 194c4762a1bSJed Brown ierr = SNESGetKSP(snes,&ksp);CHKERRQ(ierr); 195c4762a1bSJed Brown ierr = KSPGetTotalIterations(ksp,&lits);CHKERRQ(ierr); 196c4762a1bSJed Brown if (lits != slits) SETERRQ2(PETSC_COMM_WORLD,PETSC_ERR_PLIB,"Number of total linear iterations reported by SNES %D does not match reported by KSP %D",slits,lits); 197c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 198c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 199c4762a1bSJed Brown 200c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 201c4762a1bSJed Brown If using MMS, check the l_2 error 202c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 203c4762a1bSJed Brown if (MMS) { 204c4762a1bSJed Brown Vec e; 205c4762a1bSJed Brown PetscReal errorl2, errorinf; 206c4762a1bSJed Brown PetscInt N; 207c4762a1bSJed Brown 208c4762a1bSJed Brown ierr = VecDuplicate(x, &e);CHKERRQ(ierr); 209c4762a1bSJed Brown ierr = PetscObjectViewFromOptions((PetscObject) x, NULL, "-sol_view");CHKERRQ(ierr); 210c4762a1bSJed Brown ierr = FormExactSolution(da, &user, e);CHKERRQ(ierr); 211c4762a1bSJed Brown ierr = PetscObjectViewFromOptions((PetscObject) e, NULL, "-exact_view");CHKERRQ(ierr); 212c4762a1bSJed Brown ierr = VecAXPY(e, -1.0, x);CHKERRQ(ierr); 213c4762a1bSJed Brown ierr = PetscObjectViewFromOptions((PetscObject) e, NULL, "-error_view");CHKERRQ(ierr); 214c4762a1bSJed Brown ierr = VecNorm(e, NORM_2, &errorl2);CHKERRQ(ierr); 215c4762a1bSJed Brown ierr = VecNorm(e, NORM_INFINITY, &errorinf);CHKERRQ(ierr); 216c4762a1bSJed Brown ierr = VecGetSize(e, &N);CHKERRQ(ierr); 217c4762a1bSJed Brown ierr = PetscPrintf(PETSC_COMM_WORLD, "N: %D error L2 %g inf %g\n", N, (double) errorl2/PetscSqrtReal(N), (double) errorinf);CHKERRQ(ierr); 218c4762a1bSJed Brown ierr = VecDestroy(&e);CHKERRQ(ierr); 219c4762a1bSJed Brown ierr = PetscLogEventSetDof(SNES_Solve, 0, N);CHKERRQ(ierr); 220c4762a1bSJed Brown ierr = PetscLogEventSetError(SNES_Solve, 0, errorl2/PetscSqrtReal(N));CHKERRQ(ierr); 221c4762a1bSJed Brown } 222c4762a1bSJed Brown 223c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 224c4762a1bSJed Brown Free work space. All PETSc objects should be destroyed when they 225c4762a1bSJed Brown are no longer needed. 226c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 227c4762a1bSJed Brown ierr = VecDestroy(&r);CHKERRQ(ierr); 228c4762a1bSJed Brown ierr = VecDestroy(&x);CHKERRQ(ierr); 229c4762a1bSJed Brown ierr = SNESDestroy(&snes);CHKERRQ(ierr); 230c4762a1bSJed Brown ierr = DMDestroy(&da);CHKERRQ(ierr); 231c4762a1bSJed Brown ierr = PetscFinalize(); 232c4762a1bSJed Brown return ierr; 233c4762a1bSJed Brown } 234c4762a1bSJed Brown /* ------------------------------------------------------------------- */ 235c4762a1bSJed Brown /* 236c4762a1bSJed Brown FormInitialGuess - Forms initial approximation. 237c4762a1bSJed Brown 238c4762a1bSJed Brown Input Parameters: 239c4762a1bSJed Brown da - The DM 240c4762a1bSJed Brown user - user-defined application context 241c4762a1bSJed Brown 242c4762a1bSJed Brown Output Parameter: 243c4762a1bSJed Brown X - vector 244c4762a1bSJed Brown */ 245c4762a1bSJed Brown PetscErrorCode FormInitialGuess(DM da,AppCtx *user,Vec X) 246c4762a1bSJed Brown { 247c4762a1bSJed Brown PetscInt i,j,Mx,My,xs,ys,xm,ym; 248c4762a1bSJed Brown PetscErrorCode ierr; 249c4762a1bSJed Brown PetscReal lambda,temp1,temp,hx,hy; 250c4762a1bSJed Brown PetscScalar **x; 251c4762a1bSJed Brown 252c4762a1bSJed Brown PetscFunctionBeginUser; 253c4762a1bSJed Brown ierr = DMDAGetInfo(da,PETSC_IGNORE,&Mx,&My,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE);CHKERRQ(ierr); 254c4762a1bSJed Brown 255c4762a1bSJed Brown lambda = user->param; 256c4762a1bSJed Brown hx = 1.0/(PetscReal)(Mx-1); 257c4762a1bSJed Brown hy = 1.0/(PetscReal)(My-1); 258c4762a1bSJed Brown temp1 = lambda/(lambda + 1.0); 259c4762a1bSJed Brown 260c4762a1bSJed Brown /* 261c4762a1bSJed Brown Get a pointer to vector data. 262c4762a1bSJed Brown - For default PETSc vectors, VecGetArray() returns a pointer to 263c4762a1bSJed Brown the data array. Otherwise, the routine is implementation dependent. 264c4762a1bSJed Brown - You MUST call VecRestoreArray() when you no longer need access to 265c4762a1bSJed Brown the array. 266c4762a1bSJed Brown */ 267c4762a1bSJed Brown ierr = DMDAVecGetArray(da,X,&x);CHKERRQ(ierr); 268c4762a1bSJed Brown 269c4762a1bSJed Brown /* 270c4762a1bSJed Brown Get local grid boundaries (for 2-dimensional DMDA): 271c4762a1bSJed Brown xs, ys - starting grid indices (no ghost points) 272c4762a1bSJed Brown xm, ym - widths of local grid (no ghost points) 273c4762a1bSJed Brown 274c4762a1bSJed Brown */ 275c4762a1bSJed Brown ierr = DMDAGetCorners(da,&xs,&ys,NULL,&xm,&ym,NULL);CHKERRQ(ierr); 276c4762a1bSJed Brown 277c4762a1bSJed Brown /* 278c4762a1bSJed Brown Compute initial guess over the locally owned part of the grid 279c4762a1bSJed Brown */ 280c4762a1bSJed Brown for (j=ys; j<ys+ym; j++) { 281c4762a1bSJed Brown temp = (PetscReal)(PetscMin(j,My-j-1))*hy; 282c4762a1bSJed Brown for (i=xs; i<xs+xm; i++) { 283c4762a1bSJed Brown if (i == 0 || j == 0 || i == Mx-1 || j == My-1) { 284c4762a1bSJed Brown /* boundary conditions are all zero Dirichlet */ 285c4762a1bSJed Brown x[j][i] = 0.0; 286c4762a1bSJed Brown } else { 287c4762a1bSJed Brown x[j][i] = temp1*PetscSqrtReal(PetscMin((PetscReal)(PetscMin(i,Mx-i-1))*hx,temp)); 288c4762a1bSJed Brown } 289c4762a1bSJed Brown } 290c4762a1bSJed Brown } 291c4762a1bSJed Brown 292c4762a1bSJed Brown /* 293c4762a1bSJed Brown Restore vector 294c4762a1bSJed Brown */ 295c4762a1bSJed Brown ierr = DMDAVecRestoreArray(da,X,&x);CHKERRQ(ierr); 296c4762a1bSJed Brown PetscFunctionReturn(0); 297c4762a1bSJed Brown } 298c4762a1bSJed Brown 299c4762a1bSJed Brown /* 300c4762a1bSJed Brown FormExactSolution - Forms MMS solution 301c4762a1bSJed Brown 302c4762a1bSJed Brown Input Parameters: 303c4762a1bSJed Brown da - The DM 304c4762a1bSJed Brown user - user-defined application context 305c4762a1bSJed Brown 306c4762a1bSJed Brown Output Parameter: 307c4762a1bSJed Brown X - vector 308c4762a1bSJed Brown */ 309c4762a1bSJed Brown PetscErrorCode FormExactSolution(DM da, AppCtx *user, Vec U) 310c4762a1bSJed Brown { 311c4762a1bSJed Brown DM coordDA; 312c4762a1bSJed Brown Vec coordinates; 313c4762a1bSJed Brown DMDACoor2d **coords; 314c4762a1bSJed Brown PetscScalar **u; 315c4762a1bSJed Brown PetscInt xs, ys, xm, ym, i, j; 316c4762a1bSJed Brown PetscErrorCode ierr; 317c4762a1bSJed Brown 318c4762a1bSJed Brown PetscFunctionBeginUser; 319c4762a1bSJed Brown ierr = DMDAGetCorners(da, &xs, &ys, NULL, &xm, &ym, NULL);CHKERRQ(ierr); 320c4762a1bSJed Brown ierr = DMGetCoordinateDM(da, &coordDA);CHKERRQ(ierr); 321c4762a1bSJed Brown ierr = DMGetCoordinates(da, &coordinates);CHKERRQ(ierr); 322c4762a1bSJed Brown ierr = DMDAVecGetArray(coordDA, coordinates, &coords);CHKERRQ(ierr); 323c4762a1bSJed Brown ierr = DMDAVecGetArray(da, U, &u);CHKERRQ(ierr); 324c4762a1bSJed Brown for (j = ys; j < ys+ym; ++j) { 325c4762a1bSJed Brown for (i = xs; i < xs+xm; ++i) { 326c4762a1bSJed Brown user->mms_solution(user,&coords[j][i],&u[j][i]); 327c4762a1bSJed Brown } 328c4762a1bSJed Brown } 329c4762a1bSJed Brown ierr = DMDAVecRestoreArray(da, U, &u);CHKERRQ(ierr); 330c4762a1bSJed Brown ierr = DMDAVecRestoreArray(coordDA, coordinates, &coords);CHKERRQ(ierr); 331c4762a1bSJed Brown PetscFunctionReturn(0); 332c4762a1bSJed Brown } 333c4762a1bSJed Brown 334c4762a1bSJed Brown PetscErrorCode ZeroBCSolution(AppCtx *user,const DMDACoor2d *c,PetscScalar *u) 335c4762a1bSJed Brown { 336c4762a1bSJed Brown u[0] = 0.; 337c4762a1bSJed Brown return 0; 338c4762a1bSJed Brown } 339c4762a1bSJed Brown 340c4762a1bSJed Brown /* The functions below evaluate the MMS solution u(x,y) and associated forcing 341c4762a1bSJed Brown 342c4762a1bSJed Brown f(x,y) = -u_xx - u_yy - lambda exp(u) 343c4762a1bSJed Brown 344c4762a1bSJed Brown such that u(x,y) is an exact solution with f(x,y) as the right hand side forcing term. 345c4762a1bSJed Brown */ 346c4762a1bSJed Brown PetscErrorCode MMSSolution1(AppCtx *user,const DMDACoor2d *c,PetscScalar *u) 347c4762a1bSJed Brown { 348c4762a1bSJed Brown PetscReal x = PetscRealPart(c->x), y = PetscRealPart(c->y); 349c4762a1bSJed Brown u[0] = x*(1 - x)*y*(1 - y); 350c4762a1bSJed Brown PetscLogFlops(5); 351c4762a1bSJed Brown return 0; 352c4762a1bSJed Brown } 353c4762a1bSJed Brown PetscErrorCode MMSForcing1(AppCtx *user,const DMDACoor2d *c,PetscScalar *f) 354c4762a1bSJed Brown { 355c4762a1bSJed Brown PetscReal x = PetscRealPart(c->x), y = PetscRealPart(c->y); 356c4762a1bSJed Brown f[0] = 2*x*(1 - x) + 2*y*(1 - y) - user->param*PetscExpReal(x*(1 - x)*y*(1 - y)); 357c4762a1bSJed Brown return 0; 358c4762a1bSJed Brown } 359c4762a1bSJed Brown 360c4762a1bSJed Brown PetscErrorCode MMSSolution2(AppCtx *user,const DMDACoor2d *c,PetscScalar *u) 361c4762a1bSJed Brown { 362c4762a1bSJed Brown PetscReal x = PetscRealPart(c->x), y = PetscRealPart(c->y); 363c4762a1bSJed Brown u[0] = PetscSinReal(PETSC_PI*x)*PetscSinReal(PETSC_PI*y); 364c4762a1bSJed Brown PetscLogFlops(5); 365c4762a1bSJed Brown return 0; 366c4762a1bSJed Brown } 367c4762a1bSJed Brown PetscErrorCode MMSForcing2(AppCtx *user,const DMDACoor2d *c,PetscScalar *f) 368c4762a1bSJed Brown { 369c4762a1bSJed Brown PetscReal x = PetscRealPart(c->x), y = PetscRealPart(c->y); 370c4762a1bSJed Brown f[0] = 2*PetscSqr(PETSC_PI)*PetscSinReal(PETSC_PI*x)*PetscSinReal(PETSC_PI*y) - user->param*PetscExpReal(PetscSinReal(PETSC_PI*x)*PetscSinReal(PETSC_PI*y)); 371c4762a1bSJed Brown return 0; 372c4762a1bSJed Brown } 373c4762a1bSJed Brown 374c4762a1bSJed Brown PetscErrorCode MMSSolution3(AppCtx *user,const DMDACoor2d *c,PetscScalar *u) 375c4762a1bSJed Brown { 376c4762a1bSJed Brown PetscReal x = PetscRealPart(c->x), y = PetscRealPart(c->y); 377c4762a1bSJed Brown u[0] = PetscSinReal(user->m*PETSC_PI*x*(1-y))*PetscSinReal(user->n*PETSC_PI*y*(1-x)); 378c4762a1bSJed Brown PetscLogFlops(5); 379c4762a1bSJed Brown return 0; 380c4762a1bSJed Brown } 381c4762a1bSJed Brown PetscErrorCode MMSForcing3(AppCtx *user,const DMDACoor2d *c,PetscScalar *f) 382c4762a1bSJed Brown { 383c4762a1bSJed Brown PetscReal x = PetscRealPart(c->x), y = PetscRealPart(c->y); 384c4762a1bSJed Brown PetscReal m = user->m, n = user->n, lambda = user->param; 385c4762a1bSJed Brown f[0] = (-(PetscExpReal(PetscSinReal(m*PETSC_PI*x*(1 - y))*PetscSinReal(n*PETSC_PI*(1 - x)*y))*lambda) 386c4762a1bSJed Brown + PetscSqr(PETSC_PI)*(-2*m*n*((-1 + x)*x + (-1 + y)*y)*PetscCosReal(m*PETSC_PI*x*(-1 + y))*PetscCosReal(n*PETSC_PI*(-1 + x)*y) 387c4762a1bSJed Brown + (PetscSqr(m)*(PetscSqr(x) + PetscSqr(-1 + y)) + PetscSqr(n)*(PetscSqr(-1 + x) + PetscSqr(y))) 388c4762a1bSJed Brown *PetscSinReal(m*PETSC_PI*x*(-1 + y))*PetscSinReal(n*PETSC_PI*(-1 + x)*y))); 389c4762a1bSJed Brown return 0; 390c4762a1bSJed Brown } 391c4762a1bSJed Brown 392c4762a1bSJed Brown PetscErrorCode MMSSolution4(AppCtx *user,const DMDACoor2d *c,PetscScalar *u) 393c4762a1bSJed Brown { 394c4762a1bSJed Brown const PetscReal Lx = 1.,Ly = 1.; 395c4762a1bSJed Brown PetscReal x = PetscRealPart(c->x), y = PetscRealPart(c->y); 396c4762a1bSJed Brown u[0] = (PetscPowReal(x,4)-PetscSqr(Lx)*PetscSqr(x))*(PetscPowReal(y,4)-PetscSqr(Ly)*PetscSqr(y)); 397c4762a1bSJed Brown PetscLogFlops(9); 398c4762a1bSJed Brown return 0; 399c4762a1bSJed Brown } 400c4762a1bSJed Brown PetscErrorCode MMSForcing4(AppCtx *user,const DMDACoor2d *c,PetscScalar *f) 401c4762a1bSJed Brown { 402c4762a1bSJed Brown const PetscReal Lx = 1.,Ly = 1.; 403c4762a1bSJed Brown PetscReal x = PetscRealPart(c->x), y = PetscRealPart(c->y); 404c4762a1bSJed Brown f[0] = (2*PetscSqr(x)*(PetscSqr(x)-PetscSqr(Lx))*(PetscSqr(Ly)-6*PetscSqr(y)) 405c4762a1bSJed Brown + 2*PetscSqr(y)*(PetscSqr(Lx)-6*PetscSqr(x))*(PetscSqr(y)-PetscSqr(Ly)) 406c4762a1bSJed Brown - user->param*PetscExpReal((PetscPowReal(x,4)-PetscSqr(Lx)*PetscSqr(x))*(PetscPowReal(y,4)-PetscSqr(Ly)*PetscSqr(y)))); 407c4762a1bSJed Brown return 0; 408c4762a1bSJed Brown } 409c4762a1bSJed Brown 410c4762a1bSJed Brown /* ------------------------------------------------------------------- */ 411c4762a1bSJed Brown /* 412c4762a1bSJed Brown FormFunctionLocal - Evaluates nonlinear function, F(x) on local process patch 413c4762a1bSJed Brown 414c4762a1bSJed Brown */ 415c4762a1bSJed Brown PetscErrorCode FormFunctionLocal(DMDALocalInfo *info,PetscScalar **x,PetscScalar **f,AppCtx *user) 416c4762a1bSJed Brown { 417c4762a1bSJed Brown PetscErrorCode ierr; 418c4762a1bSJed Brown PetscInt i,j; 419c4762a1bSJed Brown PetscReal lambda,hx,hy,hxdhy,hydhx; 420c4762a1bSJed Brown PetscScalar u,ue,uw,un,us,uxx,uyy,mms_solution,mms_forcing; 421c4762a1bSJed Brown DMDACoor2d c; 422c4762a1bSJed Brown 423c4762a1bSJed Brown PetscFunctionBeginUser; 424c4762a1bSJed Brown lambda = user->param; 425c4762a1bSJed Brown hx = 1.0/(PetscReal)(info->mx-1); 426c4762a1bSJed Brown hy = 1.0/(PetscReal)(info->my-1); 427c4762a1bSJed Brown hxdhy = hx/hy; 428c4762a1bSJed Brown hydhx = hy/hx; 429c4762a1bSJed Brown /* 430c4762a1bSJed Brown Compute function over the locally owned part of the grid 431c4762a1bSJed Brown */ 432c4762a1bSJed Brown for (j=info->ys; j<info->ys+info->ym; j++) { 433c4762a1bSJed Brown for (i=info->xs; i<info->xs+info->xm; i++) { 434c4762a1bSJed Brown if (i == 0 || j == 0 || i == info->mx-1 || j == info->my-1) { 435c4762a1bSJed Brown c.x = i*hx; c.y = j*hy; 436c4762a1bSJed Brown ierr = user->mms_solution(user,&c,&mms_solution);CHKERRQ(ierr); 437c4762a1bSJed Brown f[j][i] = 2.0*(hydhx+hxdhy)*(x[j][i] - mms_solution); 438c4762a1bSJed Brown } else { 439c4762a1bSJed Brown u = x[j][i]; 440c4762a1bSJed Brown uw = x[j][i-1]; 441c4762a1bSJed Brown ue = x[j][i+1]; 442c4762a1bSJed Brown un = x[j-1][i]; 443c4762a1bSJed Brown us = x[j+1][i]; 444c4762a1bSJed Brown 445c4762a1bSJed Brown /* Enforce boundary conditions at neighboring points -- setting these values causes the Jacobian to be symmetric. */ 446c4762a1bSJed Brown if (i-1 == 0) {c.x = (i-1)*hx; c.y = j*hy; ierr = user->mms_solution(user,&c,&uw);CHKERRQ(ierr);} 447c4762a1bSJed Brown if (i+1 == info->mx-1) {c.x = (i+1)*hx; c.y = j*hy; ierr = user->mms_solution(user,&c,&ue);CHKERRQ(ierr);} 448c4762a1bSJed Brown if (j-1 == 0) {c.x = i*hx; c.y = (j-1)*hy; ierr = user->mms_solution(user,&c,&un);CHKERRQ(ierr);} 449c4762a1bSJed Brown if (j+1 == info->my-1) {c.x = i*hx; c.y = (j+1)*hy; ierr = user->mms_solution(user,&c,&us);CHKERRQ(ierr);} 450c4762a1bSJed Brown 451c4762a1bSJed Brown uxx = (2.0*u - uw - ue)*hydhx; 452c4762a1bSJed Brown uyy = (2.0*u - un - us)*hxdhy; 453c4762a1bSJed Brown mms_forcing = 0; 454c4762a1bSJed Brown c.x = i*hx; c.y = j*hy; 455c4762a1bSJed Brown if (user->mms_forcing) {ierr = user->mms_forcing(user,&c,&mms_forcing);CHKERRQ(ierr);} 456c4762a1bSJed Brown f[j][i] = uxx + uyy - hx*hy*(lambda*PetscExpScalar(u) + mms_forcing); 457c4762a1bSJed Brown } 458c4762a1bSJed Brown } 459c4762a1bSJed Brown } 460c4762a1bSJed Brown ierr = PetscLogFlops(11.0*info->ym*info->xm);CHKERRQ(ierr); 461c4762a1bSJed Brown PetscFunctionReturn(0); 462c4762a1bSJed Brown } 463c4762a1bSJed Brown 464c4762a1bSJed Brown /* FormObjectiveLocal - Evaluates nonlinear function, F(x) on local process patch */ 465c4762a1bSJed Brown PetscErrorCode FormObjectiveLocal(DMDALocalInfo *info,PetscScalar **x,PetscReal *obj,AppCtx *user) 466c4762a1bSJed Brown { 467c4762a1bSJed Brown PetscErrorCode ierr; 468c4762a1bSJed Brown PetscInt i,j; 469c4762a1bSJed Brown PetscReal lambda,hx,hy,hxdhy,hydhx,sc,lobj=0; 470c4762a1bSJed Brown PetscScalar u,ue,uw,un,us,uxux,uyuy; 471c4762a1bSJed Brown MPI_Comm comm; 472c4762a1bSJed Brown 473c4762a1bSJed Brown PetscFunctionBeginUser; 474c4762a1bSJed Brown *obj = 0; 475c4762a1bSJed Brown ierr = PetscObjectGetComm((PetscObject)info->da,&comm);CHKERRQ(ierr); 476c4762a1bSJed Brown lambda = user->param; 477c4762a1bSJed Brown hx = 1.0/(PetscReal)(info->mx-1); 478c4762a1bSJed Brown hy = 1.0/(PetscReal)(info->my-1); 479c4762a1bSJed Brown sc = hx*hy*lambda; 480c4762a1bSJed Brown hxdhy = hx/hy; 481c4762a1bSJed Brown hydhx = hy/hx; 482c4762a1bSJed Brown /* 483c4762a1bSJed Brown Compute function over the locally owned part of the grid 484c4762a1bSJed Brown */ 485c4762a1bSJed Brown for (j=info->ys; j<info->ys+info->ym; j++) { 486c4762a1bSJed Brown for (i=info->xs; i<info->xs+info->xm; i++) { 487c4762a1bSJed Brown if (i == 0 || j == 0 || i == info->mx-1 || j == info->my-1) { 488c4762a1bSJed Brown lobj += PetscRealPart((hydhx + hxdhy)*x[j][i]*x[j][i]); 489c4762a1bSJed Brown } else { 490c4762a1bSJed Brown u = x[j][i]; 491c4762a1bSJed Brown uw = x[j][i-1]; 492c4762a1bSJed Brown ue = x[j][i+1]; 493c4762a1bSJed Brown un = x[j-1][i]; 494c4762a1bSJed Brown us = x[j+1][i]; 495c4762a1bSJed Brown 496c4762a1bSJed Brown if (i-1 == 0) uw = 0.; 497c4762a1bSJed Brown if (i+1 == info->mx-1) ue = 0.; 498c4762a1bSJed Brown if (j-1 == 0) un = 0.; 499c4762a1bSJed Brown if (j+1 == info->my-1) us = 0.; 500c4762a1bSJed Brown 501c4762a1bSJed Brown /* F[u] = 1/2\int_{\omega}\nabla^2u(x)*u(x)*dx */ 502c4762a1bSJed Brown 503c4762a1bSJed Brown uxux = u*(2.*u - ue - uw)*hydhx; 504c4762a1bSJed Brown uyuy = u*(2.*u - un - us)*hxdhy; 505c4762a1bSJed Brown 506c4762a1bSJed Brown lobj += PetscRealPart(0.5*(uxux + uyuy) - sc*PetscExpScalar(u)); 507c4762a1bSJed Brown } 508c4762a1bSJed Brown } 509c4762a1bSJed Brown } 510c4762a1bSJed Brown ierr = PetscLogFlops(12.0*info->ym*info->xm);CHKERRQ(ierr); 511ffc4695bSBarry Smith ierr = MPI_Allreduce(&lobj,obj,1,MPIU_REAL,MPIU_SUM,comm);CHKERRMPI(ierr); 512c4762a1bSJed Brown PetscFunctionReturn(0); 513c4762a1bSJed Brown } 514c4762a1bSJed Brown 515c4762a1bSJed Brown /* 516c4762a1bSJed Brown FormJacobianLocal - Evaluates Jacobian matrix on local process patch 517c4762a1bSJed Brown */ 518c4762a1bSJed Brown PetscErrorCode FormJacobianLocal(DMDALocalInfo *info,PetscScalar **x,Mat jac,Mat jacpre,AppCtx *user) 519c4762a1bSJed Brown { 520c4762a1bSJed Brown PetscErrorCode ierr; 521c4762a1bSJed Brown PetscInt i,j,k; 522c4762a1bSJed Brown MatStencil col[5],row; 523c4762a1bSJed Brown PetscScalar lambda,v[5],hx,hy,hxdhy,hydhx,sc; 524c4762a1bSJed Brown DM coordDA; 525c4762a1bSJed Brown Vec coordinates; 526c4762a1bSJed Brown DMDACoor2d **coords; 527c4762a1bSJed Brown 528c4762a1bSJed Brown PetscFunctionBeginUser; 529c4762a1bSJed Brown lambda = user->param; 530c4762a1bSJed Brown /* Extract coordinates */ 531c4762a1bSJed Brown ierr = DMGetCoordinateDM(info->da, &coordDA);CHKERRQ(ierr); 532c4762a1bSJed Brown ierr = DMGetCoordinates(info->da, &coordinates);CHKERRQ(ierr); 533c4762a1bSJed Brown ierr = DMDAVecGetArray(coordDA, coordinates, &coords);CHKERRQ(ierr); 534c4762a1bSJed Brown hx = info->xm > 1 ? PetscRealPart(coords[info->ys][info->xs+1].x) - PetscRealPart(coords[info->ys][info->xs].x) : 1.0; 535c4762a1bSJed Brown hy = info->ym > 1 ? PetscRealPart(coords[info->ys+1][info->xs].y) - PetscRealPart(coords[info->ys][info->xs].y) : 1.0; 536c4762a1bSJed Brown ierr = DMDAVecRestoreArray(coordDA, coordinates, &coords);CHKERRQ(ierr); 537c4762a1bSJed Brown hxdhy = hx/hy; 538c4762a1bSJed Brown hydhx = hy/hx; 539c4762a1bSJed Brown sc = hx*hy*lambda; 540c4762a1bSJed Brown 541c4762a1bSJed Brown /* 542c4762a1bSJed Brown Compute entries for the locally owned part of the Jacobian. 543c4762a1bSJed Brown - Currently, all PETSc parallel matrix formats are partitioned by 544c4762a1bSJed Brown contiguous chunks of rows across the processors. 545c4762a1bSJed Brown - Each processor needs to insert only elements that it owns 546c4762a1bSJed Brown locally (but any non-local elements will be sent to the 547c4762a1bSJed Brown appropriate processor during matrix assembly). 548c4762a1bSJed Brown - Here, we set all entries for a particular row at once. 549c4762a1bSJed Brown - We can set matrix entries either using either 550c4762a1bSJed Brown MatSetValuesLocal() or MatSetValues(), as discussed above. 551c4762a1bSJed Brown */ 552c4762a1bSJed Brown for (j=info->ys; j<info->ys+info->ym; j++) { 553c4762a1bSJed Brown for (i=info->xs; i<info->xs+info->xm; i++) { 554c4762a1bSJed Brown row.j = j; row.i = i; 555c4762a1bSJed Brown /* boundary points */ 556c4762a1bSJed Brown if (i == 0 || j == 0 || i == info->mx-1 || j == info->my-1) { 557c4762a1bSJed Brown v[0] = 2.0*(hydhx + hxdhy); 558c4762a1bSJed Brown ierr = MatSetValuesStencil(jacpre,1,&row,1,&row,v,INSERT_VALUES);CHKERRQ(ierr); 559c4762a1bSJed Brown } else { 560c4762a1bSJed Brown k = 0; 561c4762a1bSJed Brown /* interior grid points */ 562c4762a1bSJed Brown if (j-1 != 0) { 563c4762a1bSJed Brown v[k] = -hxdhy; 564c4762a1bSJed Brown col[k].j = j - 1; col[k].i = i; 565c4762a1bSJed Brown k++; 566c4762a1bSJed Brown } 567c4762a1bSJed Brown if (i-1 != 0) { 568c4762a1bSJed Brown v[k] = -hydhx; 569c4762a1bSJed Brown col[k].j = j; col[k].i = i-1; 570c4762a1bSJed Brown k++; 571c4762a1bSJed Brown } 572c4762a1bSJed Brown 573c4762a1bSJed Brown v[k] = 2.0*(hydhx + hxdhy) - sc*PetscExpScalar(x[j][i]); col[k].j = row.j; col[k].i = row.i; k++; 574c4762a1bSJed Brown 575c4762a1bSJed Brown if (i+1 != info->mx-1) { 576c4762a1bSJed Brown v[k] = -hydhx; 577c4762a1bSJed Brown col[k].j = j; col[k].i = i+1; 578c4762a1bSJed Brown k++; 579c4762a1bSJed Brown } 580c4762a1bSJed Brown if (j+1 != info->mx-1) { 581c4762a1bSJed Brown v[k] = -hxdhy; 582c4762a1bSJed Brown col[k].j = j + 1; col[k].i = i; 583c4762a1bSJed Brown k++; 584c4762a1bSJed Brown } 585c4762a1bSJed Brown ierr = MatSetValuesStencil(jacpre,1,&row,k,col,v,INSERT_VALUES);CHKERRQ(ierr); 586c4762a1bSJed Brown } 587c4762a1bSJed Brown } 588c4762a1bSJed Brown } 589c4762a1bSJed Brown 590c4762a1bSJed Brown /* 591c4762a1bSJed Brown Assemble matrix, using the 2-step process: 592c4762a1bSJed Brown MatAssemblyBegin(), MatAssemblyEnd(). 593c4762a1bSJed Brown */ 594c4762a1bSJed Brown ierr = MatAssemblyBegin(jacpre,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 595c4762a1bSJed Brown ierr = MatAssemblyEnd(jacpre,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 596c4762a1bSJed Brown /* 597c4762a1bSJed Brown Tell the matrix we will never add a new nonzero location to the 598c4762a1bSJed Brown matrix. If we do, it will generate an error. 599c4762a1bSJed Brown */ 600c4762a1bSJed Brown ierr = MatSetOption(jac,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 601c4762a1bSJed Brown PetscFunctionReturn(0); 602c4762a1bSJed Brown } 603c4762a1bSJed Brown 604c4762a1bSJed Brown PetscErrorCode FormFunctionMatlab(SNES snes,Vec X,Vec F,void *ptr) 605c4762a1bSJed Brown { 6064e1ad211SJed Brown #if PetscDefined(HAVE_MATLAB_ENGINE) 607c4762a1bSJed Brown AppCtx *user = (AppCtx*)ptr; 608c4762a1bSJed Brown PetscErrorCode ierr; 609c4762a1bSJed Brown PetscInt Mx,My; 610c4762a1bSJed Brown PetscReal lambda,hx,hy; 611c4762a1bSJed Brown Vec localX,localF; 612c4762a1bSJed Brown MPI_Comm comm; 613c4762a1bSJed Brown DM da; 614c4762a1bSJed Brown 615c4762a1bSJed Brown PetscFunctionBeginUser; 616c4762a1bSJed Brown ierr = SNESGetDM(snes,&da);CHKERRQ(ierr); 617c4762a1bSJed Brown ierr = DMGetLocalVector(da,&localX);CHKERRQ(ierr); 618c4762a1bSJed Brown ierr = DMGetLocalVector(da,&localF);CHKERRQ(ierr); 619c4762a1bSJed Brown ierr = PetscObjectSetName((PetscObject)localX,"localX");CHKERRQ(ierr); 620c4762a1bSJed Brown ierr = PetscObjectSetName((PetscObject)localF,"localF");CHKERRQ(ierr); 621c4762a1bSJed Brown ierr = DMDAGetInfo(da,PETSC_IGNORE,&Mx,&My,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE);CHKERRQ(ierr); 622c4762a1bSJed Brown 623c4762a1bSJed Brown lambda = user->param; 624c4762a1bSJed Brown hx = 1.0/(PetscReal)(Mx-1); 625c4762a1bSJed Brown hy = 1.0/(PetscReal)(My-1); 626c4762a1bSJed Brown 627c4762a1bSJed Brown ierr = PetscObjectGetComm((PetscObject)snes,&comm);CHKERRQ(ierr); 628c4762a1bSJed Brown /* 629c4762a1bSJed Brown Scatter ghost points to local vector,using the 2-step process 630c4762a1bSJed Brown DMGlobalToLocalBegin(),DMGlobalToLocalEnd(). 631c4762a1bSJed Brown By placing code between these two statements, computations can be 632c4762a1bSJed Brown done while messages are in transition. 633c4762a1bSJed Brown */ 634c4762a1bSJed Brown ierr = DMGlobalToLocalBegin(da,X,INSERT_VALUES,localX);CHKERRQ(ierr); 635c4762a1bSJed Brown ierr = DMGlobalToLocalEnd(da,X,INSERT_VALUES,localX);CHKERRQ(ierr); 636c4762a1bSJed Brown ierr = PetscMatlabEnginePut(PETSC_MATLAB_ENGINE_(comm),(PetscObject)localX);CHKERRQ(ierr); 637c4762a1bSJed Brown ierr = PetscMatlabEngineEvaluate(PETSC_MATLAB_ENGINE_(comm),"localF=ex5m(localX,%18.16e,%18.16e,%18.16e)",hx,hy,lambda);CHKERRQ(ierr); 638c4762a1bSJed Brown ierr = PetscMatlabEngineGet(PETSC_MATLAB_ENGINE_(comm),(PetscObject)localF);CHKERRQ(ierr); 639c4762a1bSJed Brown 640c4762a1bSJed Brown /* 641c4762a1bSJed Brown Insert values into global vector 642c4762a1bSJed Brown */ 643c4762a1bSJed Brown ierr = DMLocalToGlobalBegin(da,localF,INSERT_VALUES,F);CHKERRQ(ierr); 644c4762a1bSJed Brown ierr = DMLocalToGlobalEnd(da,localF,INSERT_VALUES,F);CHKERRQ(ierr); 645c4762a1bSJed Brown ierr = DMRestoreLocalVector(da,&localX);CHKERRQ(ierr); 646c4762a1bSJed Brown ierr = DMRestoreLocalVector(da,&localF);CHKERRQ(ierr); 647c4762a1bSJed Brown PetscFunctionReturn(0); 6484e1ad211SJed Brown #else 6494e1ad211SJed Brown return 0; /* Never called */ 650c4762a1bSJed Brown #endif 6514e1ad211SJed Brown } 652c4762a1bSJed Brown 653c4762a1bSJed Brown /* ------------------------------------------------------------------- */ 654c4762a1bSJed Brown /* 655c4762a1bSJed Brown Applies some sweeps on nonlinear Gauss-Seidel on each process 656c4762a1bSJed Brown 657c4762a1bSJed Brown */ 658c4762a1bSJed Brown PetscErrorCode NonlinearGS(SNES snes,Vec X, Vec B, void *ctx) 659c4762a1bSJed Brown { 660c4762a1bSJed Brown PetscInt i,j,k,Mx,My,xs,ys,xm,ym,its,tot_its,sweeps,l; 661c4762a1bSJed Brown PetscErrorCode ierr; 662c4762a1bSJed Brown PetscReal lambda,hx,hy,hxdhy,hydhx,sc; 663c4762a1bSJed Brown PetscScalar **x,**b,bij,F,F0=0,J,u,un,us,ue,eu,uw,uxx,uyy,y; 664c4762a1bSJed Brown PetscReal atol,rtol,stol; 665c4762a1bSJed Brown DM da; 666c4762a1bSJed Brown AppCtx *user; 667c4762a1bSJed Brown Vec localX,localB; 668c4762a1bSJed Brown 669c4762a1bSJed Brown PetscFunctionBeginUser; 670c4762a1bSJed Brown tot_its = 0; 671c4762a1bSJed Brown ierr = SNESNGSGetSweeps(snes,&sweeps);CHKERRQ(ierr); 672c4762a1bSJed Brown ierr = SNESNGSGetTolerances(snes,&atol,&rtol,&stol,&its);CHKERRQ(ierr); 673c4762a1bSJed Brown ierr = SNESGetDM(snes,&da);CHKERRQ(ierr); 6743ec1f749SStefano Zampini ierr = DMGetApplicationContext(da,&user);CHKERRQ(ierr); 675c4762a1bSJed Brown 676c4762a1bSJed Brown ierr = DMDAGetInfo(da,PETSC_IGNORE,&Mx,&My,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE,PETSC_IGNORE);CHKERRQ(ierr); 677c4762a1bSJed Brown 678c4762a1bSJed Brown lambda = user->param; 679c4762a1bSJed Brown hx = 1.0/(PetscReal)(Mx-1); 680c4762a1bSJed Brown hy = 1.0/(PetscReal)(My-1); 681c4762a1bSJed Brown sc = hx*hy*lambda; 682c4762a1bSJed Brown hxdhy = hx/hy; 683c4762a1bSJed Brown hydhx = hy/hx; 684c4762a1bSJed Brown 685c4762a1bSJed Brown ierr = DMGetLocalVector(da,&localX);CHKERRQ(ierr); 686c4762a1bSJed Brown if (B) { 687c4762a1bSJed Brown ierr = DMGetLocalVector(da,&localB);CHKERRQ(ierr); 688c4762a1bSJed Brown } 689c4762a1bSJed Brown for (l=0; l<sweeps; l++) { 690c4762a1bSJed Brown 691c4762a1bSJed Brown ierr = DMGlobalToLocalBegin(da,X,INSERT_VALUES,localX);CHKERRQ(ierr); 692c4762a1bSJed Brown ierr = DMGlobalToLocalEnd(da,X,INSERT_VALUES,localX);CHKERRQ(ierr); 693c4762a1bSJed Brown if (B) { 694c4762a1bSJed Brown ierr = DMGlobalToLocalBegin(da,B,INSERT_VALUES,localB);CHKERRQ(ierr); 695c4762a1bSJed Brown ierr = DMGlobalToLocalEnd(da,B,INSERT_VALUES,localB);CHKERRQ(ierr); 696c4762a1bSJed Brown } 697c4762a1bSJed Brown /* 698c4762a1bSJed Brown Get a pointer to vector data. 699c4762a1bSJed Brown - For default PETSc vectors, VecGetArray() returns a pointer to 700c4762a1bSJed Brown the data array. Otherwise, the routine is implementation dependent. 701c4762a1bSJed Brown - You MUST call VecRestoreArray() when you no longer need access to 702c4762a1bSJed Brown the array. 703c4762a1bSJed Brown */ 704c4762a1bSJed Brown ierr = DMDAVecGetArray(da,localX,&x);CHKERRQ(ierr); 705*60d4fc61SSatish Balay if (B) {ierr = DMDAVecGetArray(da,localB,&b);CHKERRQ(ierr);} 706c4762a1bSJed Brown /* 707c4762a1bSJed Brown Get local grid boundaries (for 2-dimensional DMDA): 708c4762a1bSJed Brown xs, ys - starting grid indices (no ghost points) 709c4762a1bSJed Brown xm, ym - widths of local grid (no ghost points) 710c4762a1bSJed Brown */ 711c4762a1bSJed Brown ierr = DMDAGetCorners(da,&xs,&ys,NULL,&xm,&ym,NULL);CHKERRQ(ierr); 712c4762a1bSJed Brown 713c4762a1bSJed Brown for (j=ys; j<ys+ym; j++) { 714c4762a1bSJed Brown for (i=xs; i<xs+xm; i++) { 715c4762a1bSJed Brown if (i == 0 || j == 0 || i == Mx-1 || j == My-1) { 716c4762a1bSJed Brown /* boundary conditions are all zero Dirichlet */ 717c4762a1bSJed Brown x[j][i] = 0.0; 718c4762a1bSJed Brown } else { 719c4762a1bSJed Brown if (B) bij = b[j][i]; 720c4762a1bSJed Brown else bij = 0.; 721c4762a1bSJed Brown 722c4762a1bSJed Brown u = x[j][i]; 723c4762a1bSJed Brown un = x[j-1][i]; 724c4762a1bSJed Brown us = x[j+1][i]; 725c4762a1bSJed Brown ue = x[j][i-1]; 726c4762a1bSJed Brown uw = x[j][i+1]; 727c4762a1bSJed Brown 728c4762a1bSJed Brown for (k=0; k<its; k++) { 729c4762a1bSJed Brown eu = PetscExpScalar(u); 730c4762a1bSJed Brown uxx = (2.0*u - ue - uw)*hydhx; 731c4762a1bSJed Brown uyy = (2.0*u - un - us)*hxdhy; 732c4762a1bSJed Brown F = uxx + uyy - sc*eu - bij; 733c4762a1bSJed Brown if (k == 0) F0 = F; 734c4762a1bSJed Brown J = 2.0*(hydhx + hxdhy) - sc*eu; 735c4762a1bSJed Brown y = F/J; 736c4762a1bSJed Brown u -= y; 737c4762a1bSJed Brown tot_its++; 738c4762a1bSJed Brown 739c4762a1bSJed Brown if (atol > PetscAbsReal(PetscRealPart(F)) || 740c4762a1bSJed Brown rtol*PetscAbsReal(PetscRealPart(F0)) > PetscAbsReal(PetscRealPart(F)) || 741c4762a1bSJed Brown stol*PetscAbsReal(PetscRealPart(u)) > PetscAbsReal(PetscRealPart(y))) { 742c4762a1bSJed Brown break; 743c4762a1bSJed Brown } 744c4762a1bSJed Brown } 745c4762a1bSJed Brown x[j][i] = u; 746c4762a1bSJed Brown } 747c4762a1bSJed Brown } 748c4762a1bSJed Brown } 749c4762a1bSJed Brown /* 750c4762a1bSJed Brown Restore vector 751c4762a1bSJed Brown */ 752c4762a1bSJed Brown ierr = DMDAVecRestoreArray(da,localX,&x);CHKERRQ(ierr); 753c4762a1bSJed Brown ierr = DMLocalToGlobalBegin(da,localX,INSERT_VALUES,X);CHKERRQ(ierr); 754c4762a1bSJed Brown ierr = DMLocalToGlobalEnd(da,localX,INSERT_VALUES,X);CHKERRQ(ierr); 755c4762a1bSJed Brown } 756c4762a1bSJed Brown ierr = PetscLogFlops(tot_its*(21.0));CHKERRQ(ierr); 757c4762a1bSJed Brown ierr = DMRestoreLocalVector(da,&localX);CHKERRQ(ierr); 758c4762a1bSJed Brown if (B) { 759c4762a1bSJed Brown ierr = DMDAVecRestoreArray(da,localB,&b);CHKERRQ(ierr); 760c4762a1bSJed Brown ierr = DMRestoreLocalVector(da,&localB);CHKERRQ(ierr); 761c4762a1bSJed Brown } 762c4762a1bSJed Brown PetscFunctionReturn(0); 763c4762a1bSJed Brown } 764c4762a1bSJed Brown 765c4762a1bSJed Brown /*TEST 766c4762a1bSJed Brown 767c4762a1bSJed Brown test: 768c4762a1bSJed Brown suffix: asm_0 769c4762a1bSJed Brown requires: !single 770c4762a1bSJed Brown args: -mms 1 -par 0.0 -snes_monitor_short -snes_converged_reason -snes_view -ksp_rtol 1.0e-9 -ksp_monitor_short -ksp_type richardson -pc_type asm -pc_asm_blocks 2 -pc_asm_overlap 0 -pc_asm_local_type additive -sub_pc_type lu 771c4762a1bSJed Brown 772c4762a1bSJed Brown test: 773c4762a1bSJed Brown suffix: msm_0 774c4762a1bSJed Brown requires: !single 775c4762a1bSJed Brown args: -mms 1 -par 0.0 -snes_monitor_short -snes_converged_reason -snes_view -ksp_rtol 1.0e-9 -ksp_monitor_short -ksp_type richardson -pc_type asm -pc_asm_blocks 2 -pc_asm_overlap 0 -pc_asm_local_type multiplicative -sub_pc_type lu 776c4762a1bSJed Brown 777c4762a1bSJed Brown test: 778c4762a1bSJed Brown suffix: asm_1 779c4762a1bSJed Brown requires: !single 780c4762a1bSJed Brown args: -mms 1 -par 0.0 -snes_monitor_short -snes_converged_reason -snes_view -ksp_rtol 1.0e-9 -ksp_monitor_short -ksp_type richardson -pc_type asm -pc_asm_blocks 2 -pc_asm_overlap 0 -pc_asm_local_type additive -sub_pc_type lu -da_grid_x 8 781c4762a1bSJed Brown 782c4762a1bSJed Brown test: 783c4762a1bSJed Brown suffix: msm_1 784c4762a1bSJed Brown requires: !single 785c4762a1bSJed Brown args: -mms 1 -par 0.0 -snes_monitor_short -snes_converged_reason -snes_view -ksp_rtol 1.0e-9 -ksp_monitor_short -ksp_type richardson -pc_type asm -pc_asm_blocks 2 -pc_asm_overlap 0 -pc_asm_local_type multiplicative -sub_pc_type lu -da_grid_x 8 786c4762a1bSJed Brown 787c4762a1bSJed Brown test: 788c4762a1bSJed Brown suffix: asm_2 789c4762a1bSJed Brown requires: !single 790c4762a1bSJed Brown args: -mms 1 -par 0.0 -snes_monitor_short -snes_converged_reason -snes_view -ksp_rtol 1.0e-9 -ksp_monitor_short -ksp_type richardson -pc_type asm -pc_asm_blocks 3 -pc_asm_overlap 0 -pc_asm_local_type additive -sub_pc_type lu -da_grid_x 8 791c4762a1bSJed Brown 792c4762a1bSJed Brown test: 793c4762a1bSJed Brown suffix: msm_2 794c4762a1bSJed Brown requires: !single 795c4762a1bSJed Brown args: -mms 1 -par 0.0 -snes_monitor_short -snes_converged_reason -snes_view -ksp_rtol 1.0e-9 -ksp_monitor_short -ksp_type richardson -pc_type asm -pc_asm_blocks 3 -pc_asm_overlap 0 -pc_asm_local_type multiplicative -sub_pc_type lu -da_grid_x 8 796c4762a1bSJed Brown 797c4762a1bSJed Brown test: 798c4762a1bSJed Brown suffix: asm_3 799c4762a1bSJed Brown requires: !single 800c4762a1bSJed Brown args: -mms 1 -par 0.0 -snes_monitor_short -snes_converged_reason -snes_view -ksp_rtol 1.0e-9 -ksp_monitor_short -ksp_type richardson -pc_type asm -pc_asm_blocks 4 -pc_asm_overlap 0 -pc_asm_local_type additive -sub_pc_type lu -da_grid_x 8 801c4762a1bSJed Brown 802c4762a1bSJed Brown test: 803c4762a1bSJed Brown suffix: msm_3 804c4762a1bSJed Brown requires: !single 805c4762a1bSJed Brown args: -mms 1 -par 0.0 -snes_monitor_short -snes_converged_reason -snes_view -ksp_rtol 1.0e-9 -ksp_monitor_short -ksp_type richardson -pc_type asm -pc_asm_blocks 4 -pc_asm_overlap 0 -pc_asm_local_type multiplicative -sub_pc_type lu -da_grid_x 8 806c4762a1bSJed Brown 807c4762a1bSJed Brown test: 808c4762a1bSJed Brown suffix: asm_4 809c4762a1bSJed Brown requires: !single 810c4762a1bSJed Brown nsize: 2 811c4762a1bSJed Brown args: -mms 1 -par 0.0 -snes_monitor_short -snes_converged_reason -snes_view -ksp_rtol 1.0e-9 -ksp_monitor_short -ksp_type richardson -pc_type asm -pc_asm_blocks 2 -pc_asm_overlap 0 -pc_asm_local_type additive -sub_pc_type lu -da_grid_x 8 812c4762a1bSJed Brown 813c4762a1bSJed Brown test: 814c4762a1bSJed Brown suffix: msm_4 815c4762a1bSJed Brown requires: !single 816c4762a1bSJed Brown nsize: 2 817c4762a1bSJed Brown args: -mms 1 -par 0.0 -snes_monitor_short -snes_converged_reason -snes_view -ksp_rtol 1.0e-9 -ksp_monitor_short -ksp_type richardson -pc_type asm -pc_asm_blocks 2 -pc_asm_overlap 0 -pc_asm_local_type multiplicative -sub_pc_type lu -da_grid_x 8 818c4762a1bSJed Brown 819c4762a1bSJed Brown test: 820c4762a1bSJed Brown suffix: asm_5 821c4762a1bSJed Brown requires: !single 822c4762a1bSJed Brown nsize: 2 823c4762a1bSJed Brown args: -mms 1 -par 0.0 -snes_monitor_short -snes_converged_reason -snes_view -ksp_rtol 1.0e-9 -ksp_monitor_short -ksp_type richardson -pc_type asm -pc_asm_blocks 4 -pc_asm_overlap 0 -pc_asm_local_type additive -sub_pc_type lu -da_grid_x 8 824c4762a1bSJed Brown 825c4762a1bSJed Brown test: 826c4762a1bSJed Brown suffix: msm_5 827c4762a1bSJed Brown requires: !single 828c4762a1bSJed Brown nsize: 2 829c4762a1bSJed Brown args: -mms 1 -par 0.0 -snes_monitor_short -snes_converged_reason -snes_view -ksp_rtol 1.0e-9 -ksp_monitor_short -ksp_type richardson -pc_type asm -pc_asm_blocks 4 -pc_asm_overlap 0 -pc_asm_local_type multiplicative -sub_pc_type lu -da_grid_x 8 830c4762a1bSJed Brown 831c4762a1bSJed Brown test: 832c4762a1bSJed Brown args: -snes_rtol 1.e-5 -pc_type mg -ksp_monitor_short -snes_view -pc_mg_levels 3 -pc_mg_galerkin pmat -da_grid_x 17 -da_grid_y 17 -mg_levels_ksp_monitor_short -mg_levels_ksp_norm_type unpreconditioned -snes_monitor_short -mg_levels_ksp_chebyshev_esteig 0.5,1.1 -mg_levels_pc_type sor -pc_mg_type full 833c4762a1bSJed Brown requires: !single 834c4762a1bSJed Brown 835c4762a1bSJed Brown test: 836c4762a1bSJed Brown suffix: 2 837c4762a1bSJed Brown args: -pc_type mg -ksp_converged_reason -snes_view -pc_mg_galerkin pmat -snes_grid_sequence 3 -mg_levels_ksp_norm_type unpreconditioned -snes_monitor_short -mg_levels_ksp_chebyshev_esteig 0.5,1.1 -mg_levels_pc_type sor -pc_mg_type full -ksp_atol -1. 838c4762a1bSJed Brown 839c4762a1bSJed Brown test: 840c4762a1bSJed Brown suffix: 3 841c4762a1bSJed Brown nsize: 2 842c4762a1bSJed Brown args: -snes_grid_sequence 2 -snes_mf_operator -snes_converged_reason -snes_view -pc_type mg -snes_atol -1 -snes_rtol 1.e-2 843c4762a1bSJed Brown filter: grep -v "otal number of function evaluations" 844c4762a1bSJed Brown 845c4762a1bSJed Brown test: 846c4762a1bSJed Brown suffix: 4 847c4762a1bSJed Brown nsize: 2 848c4762a1bSJed Brown args: -snes_grid_sequence 2 -snes_monitor_short -ksp_converged_reason -snes_converged_reason -snes_view -pc_type mg -snes_atol -1 -ksp_atol -1 849c4762a1bSJed Brown 850c4762a1bSJed Brown test: 851c4762a1bSJed Brown suffix: 5_anderson 852c4762a1bSJed Brown args: -da_grid_x 81 -da_grid_y 81 -snes_monitor_short -snes_max_it 50 -par 6.0 -snes_type anderson 853c4762a1bSJed Brown 854c4762a1bSJed Brown test: 855c4762a1bSJed Brown suffix: 5_aspin 856c4762a1bSJed Brown nsize: 4 857c4762a1bSJed Brown args: -snes_monitor_short -ksp_monitor_short -snes_converged_reason -da_refine 4 -da_overlap 3 -snes_type aspin -snes_view 858c4762a1bSJed Brown 859c4762a1bSJed Brown test: 860c4762a1bSJed Brown suffix: 5_broyden 861c4762a1bSJed Brown args: -da_grid_x 81 -da_grid_y 81 -snes_monitor_short -snes_max_it 50 -par 6.0 -snes_type qn -snes_qn_type broyden -snes_qn_m 10 862c4762a1bSJed Brown 863c4762a1bSJed Brown test: 864c4762a1bSJed Brown suffix: 5_fas 865c4762a1bSJed Brown args: -fas_coarse_snes_max_it 1 -fas_coarse_pc_type lu -fas_coarse_ksp_type preonly -snes_monitor_short -snes_type fas -fas_coarse_ksp_type richardson -da_refine 6 866c4762a1bSJed Brown requires: !single 867c4762a1bSJed Brown 868c4762a1bSJed Brown test: 869c4762a1bSJed Brown suffix: 5_fas_additive 870c4762a1bSJed Brown args: -fas_coarse_snes_max_it 1 -fas_coarse_pc_type lu -fas_coarse_ksp_type preonly -snes_monitor_short -snes_type fas -fas_coarse_ksp_type richardson -da_refine 6 -snes_fas_type additive -snes_max_it 50 871c4762a1bSJed Brown 872c4762a1bSJed Brown test: 873c4762a1bSJed Brown suffix: 5_fas_monitor 874c4762a1bSJed Brown args: -da_refine 1 -snes_type fas -snes_fas_monitor 875c4762a1bSJed Brown requires: !single 876c4762a1bSJed Brown 877c4762a1bSJed Brown test: 878c4762a1bSJed Brown suffix: 5_ls 879c4762a1bSJed Brown args: -da_grid_x 81 -da_grid_y 81 -snes_monitor_short -snes_max_it 50 -par 6.0 -snes_type newtonls 880c4762a1bSJed Brown 881c4762a1bSJed Brown test: 882c4762a1bSJed Brown suffix: 5_ls_sell_sor 883c4762a1bSJed Brown args: -da_grid_x 81 -da_grid_y 81 -snes_monitor_short -snes_max_it 50 -par 6.0 -snes_type newtonls -dm_mat_type sell -pc_type sor 884c4762a1bSJed Brown output_file: output/ex5_5_ls.out 885c4762a1bSJed Brown 886c4762a1bSJed Brown test: 887c4762a1bSJed Brown suffix: 5_nasm 888c4762a1bSJed Brown nsize: 4 889c4762a1bSJed Brown args: -snes_monitor_short -snes_converged_reason -da_refine 4 -da_overlap 3 -snes_type nasm -snes_nasm_type restrict -snes_max_it 10 890c4762a1bSJed Brown 891c4762a1bSJed Brown test: 892c4762a1bSJed Brown suffix: 5_ncg 893c4762a1bSJed Brown args: -da_grid_x 81 -da_grid_y 81 -snes_monitor_short -snes_max_it 50 -par 6.0 -snes_type ncg -snes_ncg_type fr 894c4762a1bSJed Brown 895c4762a1bSJed Brown test: 896c4762a1bSJed Brown suffix: 5_newton_asm_dmda 897c4762a1bSJed Brown nsize: 4 898c4762a1bSJed Brown args: -snes_monitor_short -ksp_monitor_short -snes_converged_reason -da_refine 4 -da_overlap 3 -snes_type newtonls -pc_type asm -pc_asm_dm_subdomains -malloc_dump 899c4762a1bSJed Brown requires: !single 900c4762a1bSJed Brown 901c4762a1bSJed Brown test: 902c4762a1bSJed Brown suffix: 5_newton_gasm_dmda 903c4762a1bSJed Brown nsize: 4 904c4762a1bSJed Brown args: -snes_monitor_short -ksp_monitor_short -snes_converged_reason -da_refine 4 -da_overlap 3 -snes_type newtonls -pc_type gasm -malloc_dump 905c4762a1bSJed Brown requires: !single 906c4762a1bSJed Brown 907c4762a1bSJed Brown test: 908c4762a1bSJed Brown suffix: 5_ngmres 909c4762a1bSJed Brown args: -da_grid_x 81 -da_grid_y 81 -snes_monitor_short -snes_max_it 50 -par 6.0 -snes_type ngmres -snes_ngmres_m 10 910c4762a1bSJed Brown 911c4762a1bSJed Brown test: 912c4762a1bSJed Brown suffix: 5_ngmres_fas 913c4762a1bSJed Brown args: -snes_rtol 1.e-4 -snes_type ngmres -npc_fas_coarse_snes_max_it 1 -npc_fas_coarse_snes_type newtonls -npc_fas_coarse_pc_type lu -npc_fas_coarse_ksp_type preonly -snes_ngmres_m 10 -snes_monitor_short -npc_snes_max_it 1 -npc_snes_type fas -npc_fas_coarse_ksp_type richardson -da_refine 6 914c4762a1bSJed Brown 915c4762a1bSJed Brown test: 916c4762a1bSJed Brown suffix: 5_ngmres_ngs 917c4762a1bSJed Brown args: -da_grid_x 81 -da_grid_y 81 -snes_monitor_short -snes_max_it 50 -par 6.0 -snes_type ngmres -npc_snes_type ngs -npc_snes_max_it 1 918c4762a1bSJed Brown 919c4762a1bSJed Brown test: 920c4762a1bSJed Brown suffix: 5_ngmres_nrichardson 921c4762a1bSJed Brown args: -da_grid_x 81 -da_grid_y 81 -snes_monitor_short -snes_max_it 50 -par 6.0 -snes_type ngmres -snes_ngmres_m 10 -npc_snes_type nrichardson -npc_snes_max_it 3 922c4762a1bSJed Brown output_file: output/ex5_5_ngmres_richardson.out 923c4762a1bSJed Brown 924c4762a1bSJed Brown test: 925c4762a1bSJed Brown suffix: 5_nrichardson 926c4762a1bSJed Brown args: -da_grid_x 81 -da_grid_y 81 -snes_monitor_short -snes_max_it 50 -par 6.0 -snes_type nrichardson 927c4762a1bSJed Brown 928c4762a1bSJed Brown test: 929c4762a1bSJed Brown suffix: 5_qn 930c4762a1bSJed Brown args: -da_grid_x 81 -da_grid_y 81 -snes_monitor_short -snes_max_it 50 -par 6.0 -snes_type qn -snes_linesearch_type cp -snes_qn_m 10 931c4762a1bSJed Brown 932c4762a1bSJed Brown test: 933c4762a1bSJed Brown suffix: 6 934c4762a1bSJed Brown nsize: 4 935c4762a1bSJed Brown args: -snes_converged_reason -ksp_converged_reason -da_grid_x 129 -da_grid_y 129 -pc_type mg -pc_mg_levels 8 -mg_levels_ksp_type chebyshev -mg_levels_ksp_chebyshev_esteig 0,0.5,0,1.1 -mg_levels_ksp_max_it 2 936c4762a1bSJed Brown 937c4762a1bSJed Brown test: 938c4762a1bSJed Brown requires: complex !single 939c4762a1bSJed Brown suffix: complex 940c4762a1bSJed Brown args: -snes_mf_operator -mat_mffd_complex -snes_monitor 941c4762a1bSJed Brown 942c4762a1bSJed Brown TEST*/ 943