1c4762a1bSJed Brown static char help[] = "Poiseuille Flow in 2d and 3d channels with finite elements.\n\ 2c4762a1bSJed Brown We solve the Poiseuille flow problem in a rectangular\n\ 3c4762a1bSJed Brown domain, using a parallel unstructured mesh (DMPLEX) to discretize it.\n\n\n"; 4c4762a1bSJed Brown 5c4762a1bSJed Brown /*F 6c4762a1bSJed Brown A Poiseuille flow is a steady-state isoviscous Stokes flow in a pipe of constant cross-section. We discretize using the 7c4762a1bSJed Brown finite element method on an unstructured mesh. The weak form equations are 8c4762a1bSJed Brown \begin{align*} 9c4762a1bSJed Brown < \nabla v, \nu (\nabla u + {\nabla u}^T) > - < \nabla\cdot v, p > + < v, \Delta \hat n >_{\Gamma_o} = 0 10c4762a1bSJed Brown < q, \nabla\cdot u > = 0 11c4762a1bSJed Brown \end{align*} 12c4762a1bSJed Brown where $\nu$ is the kinematic viscosity, $\Delta$ is the pressure drop per unit length, assuming that pressure is 0 on 13c4762a1bSJed Brown the left edge, and $\Gamma_o$ is the outlet boundary at the right edge of the pipe. The normal velocity will be zero at 14c4762a1bSJed Brown the wall, but we will allow a fixed tangential velocity $u_0$. 15c4762a1bSJed Brown 16c4762a1bSJed Brown In order to test our global to local basis transformation, we will allow the pipe to be at an angle $\alpha$ to the 17c4762a1bSJed Brown coordinate axes. 18c4762a1bSJed Brown 19c4762a1bSJed Brown For visualization, use 20c4762a1bSJed Brown 21c4762a1bSJed Brown -dm_view hdf5:$PWD/sol.h5 -sol_vec_view hdf5:$PWD/sol.h5::append -exact_vec_view hdf5:$PWD/sol.h5::append 22c4762a1bSJed Brown F*/ 23c4762a1bSJed Brown 24c4762a1bSJed Brown #include <petscdmplex.h> 25c4762a1bSJed Brown #include <petscsnes.h> 26c4762a1bSJed Brown #include <petscds.h> 27c4762a1bSJed Brown #include <petscbag.h> 28c4762a1bSJed Brown 29c4762a1bSJed Brown typedef struct { 30c4762a1bSJed Brown PetscReal Delta; /* Pressure drop per unit length */ 31c4762a1bSJed Brown PetscReal nu; /* Kinematic viscosity */ 32c4762a1bSJed Brown PetscReal u_0; /* Tangential velocity at the wall */ 33c4762a1bSJed Brown PetscReal alpha; /* Angle of pipe wall to x-axis */ 34c4762a1bSJed Brown } Parameter; 35c4762a1bSJed Brown 36c4762a1bSJed Brown typedef struct { 37c4762a1bSJed Brown PetscBag bag; /* Holds problem parameters */ 38c4762a1bSJed Brown } AppCtx; 39c4762a1bSJed Brown 40c4762a1bSJed Brown /* 41c4762a1bSJed Brown In 2D, plane Poiseuille flow has exact solution: 42c4762a1bSJed Brown 43c4762a1bSJed Brown u = \Delta/(2 \nu) y (1 - y) + u_0 44c4762a1bSJed Brown v = 0 45c4762a1bSJed Brown p = -\Delta x 46c4762a1bSJed Brown f = 0 47c4762a1bSJed Brown 48c4762a1bSJed Brown so that 49c4762a1bSJed Brown 50c4762a1bSJed Brown -\nu \Delta u + \nabla p + f = <\Delta, 0> + <-\Delta, 0> + <0, 0> = 0 51c4762a1bSJed Brown \nabla \cdot u = 0 + 0 = 0 52c4762a1bSJed Brown 53c4762a1bSJed Brown In 3D we use exact solution: 54c4762a1bSJed Brown 55c4762a1bSJed Brown u = \Delta/(4 \nu) (y (1 - y) + z (1 - z)) + u_0 56c4762a1bSJed Brown v = 0 57c4762a1bSJed Brown w = 0 58c4762a1bSJed Brown p = -\Delta x 59c4762a1bSJed Brown f = 0 60c4762a1bSJed Brown 61c4762a1bSJed Brown so that 62c4762a1bSJed Brown 63c4762a1bSJed Brown -\nu \Delta u + \nabla p + f = <Delta, 0, 0> + <-Delta, 0, 0> + <0, 0, 0> = 0 64c4762a1bSJed Brown \nabla \cdot u = 0 + 0 + 0 = 0 65c4762a1bSJed Brown 66c4762a1bSJed Brown Note that these functions use coordinates X in the global (rotated) frame 67c4762a1bSJed Brown */ 68c4762a1bSJed Brown PetscErrorCode quadratic_u(PetscInt dim, PetscReal time, const PetscReal X[], PetscInt Nf, PetscScalar *u, void *ctx) 69c4762a1bSJed Brown { 70c4762a1bSJed Brown Parameter *param = (Parameter *) ctx; 71c4762a1bSJed Brown PetscReal Delta = param->Delta; 72c4762a1bSJed Brown PetscReal nu = param->nu; 73c4762a1bSJed Brown PetscReal u_0 = param->u_0; 74c4762a1bSJed Brown PetscReal fac = (PetscReal) (dim - 1); 75c4762a1bSJed Brown PetscInt d; 76c4762a1bSJed Brown 77c4762a1bSJed Brown u[0] = u_0; 78c4762a1bSJed Brown for (d = 1; d < dim; ++d) u[0] += Delta/(fac * 2.0*nu) * X[d] * (1.0 - X[d]); 79c4762a1bSJed Brown for (d = 1; d < dim; ++d) u[d] = 0.0; 80c4762a1bSJed Brown return 0; 81c4762a1bSJed Brown } 82c4762a1bSJed Brown 83c4762a1bSJed Brown PetscErrorCode linear_p(PetscInt dim, PetscReal time, const PetscReal X[], PetscInt Nf, PetscScalar *p, void *ctx) 84c4762a1bSJed Brown { 85c4762a1bSJed Brown Parameter *param = (Parameter *) ctx; 86c4762a1bSJed Brown PetscReal Delta = param->Delta; 87c4762a1bSJed Brown 88c4762a1bSJed Brown p[0] = -Delta * X[0]; 89c4762a1bSJed Brown return 0; 90c4762a1bSJed Brown } 91c4762a1bSJed Brown 92c4762a1bSJed Brown PetscErrorCode wall_velocity(PetscInt dim, PetscReal time, const PetscReal X[], PetscInt Nf, PetscScalar *u, void *ctx) 93c4762a1bSJed Brown { 94c4762a1bSJed Brown Parameter *param = (Parameter *) ctx; 95c4762a1bSJed Brown PetscReal u_0 = param->u_0; 96c4762a1bSJed Brown PetscInt d; 97c4762a1bSJed Brown 98c4762a1bSJed Brown u[0] = u_0; 99c4762a1bSJed Brown for (d = 1; d < dim; ++d) u[d] = 0.0; 100c4762a1bSJed Brown return 0; 101c4762a1bSJed Brown } 102c4762a1bSJed Brown 103c4762a1bSJed Brown /* gradU[comp*dim+d] = {u_x, u_y, v_x, v_y} or {u_x, u_y, u_z, v_x, v_y, v_z, w_x, w_y, w_z} 104c4762a1bSJed Brown u[Ncomp] = {p} */ 105c4762a1bSJed Brown void f1_u(PetscInt dim, PetscInt Nf, PetscInt NfAux, 106c4762a1bSJed Brown const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 107c4762a1bSJed Brown const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 108c4762a1bSJed Brown PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f1[]) 109c4762a1bSJed Brown { 110c4762a1bSJed Brown const PetscReal nu = PetscRealPart(constants[1]); 111c4762a1bSJed Brown const PetscInt Nc = dim; 112c4762a1bSJed Brown PetscInt c, d; 113c4762a1bSJed Brown 114c4762a1bSJed Brown for (c = 0; c < Nc; ++c) { 115c4762a1bSJed Brown for (d = 0; d < dim; ++d) { 116c4762a1bSJed Brown /* f1[c*dim+d] = 0.5*nu*(u_x[c*dim+d] + u_x[d*dim+c]); */ 117c4762a1bSJed Brown f1[c*dim+d] = nu*u_x[c*dim+d]; 118c4762a1bSJed Brown } 119c4762a1bSJed Brown f1[c*dim+c] -= u[uOff[1]]; 120c4762a1bSJed Brown } 121c4762a1bSJed Brown } 122c4762a1bSJed Brown 123c4762a1bSJed Brown /* gradU[comp*dim+d] = {u_x, u_y, v_x, v_y} or {u_x, u_y, u_z, v_x, v_y, v_z, w_x, w_y, w_z} */ 124c4762a1bSJed Brown void f0_p(PetscInt dim, PetscInt Nf, PetscInt NfAux, 125c4762a1bSJed Brown const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 126c4762a1bSJed Brown const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 127c4762a1bSJed Brown PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[]) 128c4762a1bSJed Brown { 129c4762a1bSJed Brown PetscInt d; 130c4762a1bSJed Brown for (d = 0, f0[0] = 0.0; d < dim; ++d) f0[0] += u_x[d*dim+d]; 131c4762a1bSJed Brown } 132c4762a1bSJed Brown 133c4762a1bSJed Brown /* Residual functions are in reference coordinates */ 134c4762a1bSJed Brown static void f0_bd_u(PetscInt dim, PetscInt Nf, PetscInt NfAux, 135c4762a1bSJed Brown const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 136c4762a1bSJed Brown const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 137c4762a1bSJed Brown PetscReal t, const PetscReal x[], const PetscReal n[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[]) 138c4762a1bSJed Brown { 139c4762a1bSJed Brown const PetscReal Delta = PetscRealPart(constants[0]); 140c4762a1bSJed Brown PetscReal alpha = PetscRealPart(constants[3]); 141c4762a1bSJed Brown PetscReal X = PetscCosReal(alpha)*x[0] + PetscSinReal(alpha)*x[1]; 142c4762a1bSJed Brown PetscInt d; 143c4762a1bSJed Brown 144c4762a1bSJed Brown for (d = 0; d < dim; ++d) { 145c4762a1bSJed Brown f0[d] = -Delta * X * n[d]; 146c4762a1bSJed Brown } 147c4762a1bSJed Brown } 148c4762a1bSJed Brown 149c4762a1bSJed Brown /* < q, \nabla\cdot u > 150c4762a1bSJed Brown NcompI = 1, NcompJ = dim */ 151c4762a1bSJed Brown void g1_pu(PetscInt dim, PetscInt Nf, PetscInt NfAux, 152c4762a1bSJed Brown const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 153c4762a1bSJed Brown const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 154c4762a1bSJed Brown PetscReal t, PetscReal u_tShift, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar g1[]) 155c4762a1bSJed Brown { 156c4762a1bSJed Brown PetscInt d; 157c4762a1bSJed Brown for (d = 0; d < dim; ++d) g1[d*dim+d] = 1.0; /* \frac{\partial\phi^{u_d}}{\partial x_d} */ 158c4762a1bSJed Brown } 159c4762a1bSJed Brown 160c4762a1bSJed Brown /* -< \nabla\cdot v, p > 161c4762a1bSJed Brown NcompI = dim, NcompJ = 1 */ 162c4762a1bSJed Brown void g2_up(PetscInt dim, PetscInt Nf, PetscInt NfAux, 163c4762a1bSJed Brown const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 164c4762a1bSJed Brown const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 165c4762a1bSJed Brown PetscReal t, PetscReal u_tShift, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar g2[]) 166c4762a1bSJed Brown { 167c4762a1bSJed Brown PetscInt d; 168c4762a1bSJed Brown for (d = 0; d < dim; ++d) g2[d*dim+d] = -1.0; /* \frac{\partial\psi^{u_d}}{\partial x_d} */ 169c4762a1bSJed Brown } 170c4762a1bSJed Brown 171c4762a1bSJed Brown /* < \nabla v, \nabla u + {\nabla u}^T > 172c4762a1bSJed Brown This just gives \nabla u, give the perdiagonal for the transpose */ 173c4762a1bSJed Brown void g3_uu(PetscInt dim, PetscInt Nf, PetscInt NfAux, 174c4762a1bSJed Brown const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 175c4762a1bSJed Brown const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 176c4762a1bSJed Brown PetscReal t, PetscReal u_tShift, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar g3[]) 177c4762a1bSJed Brown { 178c4762a1bSJed Brown const PetscReal nu = PetscRealPart(constants[1]); 179c4762a1bSJed Brown const PetscInt Nc = dim; 180c4762a1bSJed Brown PetscInt c, d; 181c4762a1bSJed Brown 182c4762a1bSJed Brown for (c = 0; c < Nc; ++c) { 183c4762a1bSJed Brown for (d = 0; d < dim; ++d) { 184c4762a1bSJed Brown g3[((c*Nc+c)*dim+d)*dim+d] = nu; 185c4762a1bSJed Brown } 186c4762a1bSJed Brown } 187c4762a1bSJed Brown } 188c4762a1bSJed Brown 189c4762a1bSJed Brown static PetscErrorCode SetupParameters(AppCtx *user) 190c4762a1bSJed Brown { 191c4762a1bSJed Brown PetscBag bag; 192c4762a1bSJed Brown Parameter *p; 193c4762a1bSJed Brown PetscErrorCode ierr; 194c4762a1bSJed Brown 195c4762a1bSJed Brown PetscFunctionBeginUser; 196c4762a1bSJed Brown /* setup PETSc parameter bag */ 197c4762a1bSJed Brown ierr = PetscBagGetData(user->bag, (void **) &p);CHKERRQ(ierr); 198c4762a1bSJed Brown ierr = PetscBagSetName(user->bag, "par", "Poiseuille flow parameters");CHKERRQ(ierr); 199c4762a1bSJed Brown bag = user->bag; 200c4762a1bSJed Brown ierr = PetscBagRegisterReal(bag, &p->Delta, 1.0, "Delta", "Pressure drop per unit length");CHKERRQ(ierr); 201c4762a1bSJed Brown ierr = PetscBagRegisterReal(bag, &p->nu, 1.0, "nu", "Kinematic viscosity");CHKERRQ(ierr); 202c4762a1bSJed Brown ierr = PetscBagRegisterReal(bag, &p->u_0, 0.0, "u_0", "Tangential velocity at the wall");CHKERRQ(ierr); 203c4762a1bSJed Brown ierr = PetscBagRegisterReal(bag, &p->alpha, 0.0, "alpha", "Angle of pipe wall to x-axis");CHKERRQ(ierr); 204c4762a1bSJed Brown PetscFunctionReturn(0); 205c4762a1bSJed Brown } 206c4762a1bSJed Brown 207c4762a1bSJed Brown PetscErrorCode CreateMesh(MPI_Comm comm, AppCtx *user, DM *dm) 208c4762a1bSJed Brown { 209c4762a1bSJed Brown PetscErrorCode ierr; 210c4762a1bSJed Brown 211c4762a1bSJed Brown PetscFunctionBeginUser; 21230602db0SMatthew G. Knepley ierr = DMCreate(comm, dm);CHKERRQ(ierr); 21330602db0SMatthew G. Knepley ierr = DMSetType(*dm, DMPLEX);CHKERRQ(ierr); 21430602db0SMatthew G. Knepley ierr = DMSetFromOptions(*dm);CHKERRQ(ierr); 215c4762a1bSJed Brown { 216c4762a1bSJed Brown Parameter *param; 217c4762a1bSJed Brown Vec coordinates; 218c4762a1bSJed Brown PetscScalar *coords; 219c4762a1bSJed Brown PetscReal alpha; 220c4762a1bSJed Brown PetscInt cdim, N, bs, i; 221c4762a1bSJed Brown 222c4762a1bSJed Brown ierr = DMGetCoordinateDim(*dm, &cdim);CHKERRQ(ierr); 223c4762a1bSJed Brown ierr = DMGetCoordinates(*dm, &coordinates);CHKERRQ(ierr); 224c4762a1bSJed Brown ierr = VecGetLocalSize(coordinates, &N);CHKERRQ(ierr); 225c4762a1bSJed Brown ierr = VecGetBlockSize(coordinates, &bs);CHKERRQ(ierr); 226*2c71b3e2SJacob Faibussowitsch PetscCheckFalse(bs != cdim,comm, PETSC_ERR_ARG_WRONG, "Invalid coordinate blocksize %D != embedding dimension %D", bs, cdim); 227c4762a1bSJed Brown ierr = VecGetArray(coordinates, &coords);CHKERRQ(ierr); 228c4762a1bSJed Brown ierr = PetscBagGetData(user->bag, (void **) ¶m);CHKERRQ(ierr); 229c4762a1bSJed Brown alpha = param->alpha; 230c4762a1bSJed Brown for (i = 0; i < N; i += cdim) { 231c4762a1bSJed Brown PetscScalar x = coords[i+0]; 232c4762a1bSJed Brown PetscScalar y = coords[i+1]; 233c4762a1bSJed Brown 234c4762a1bSJed Brown coords[i+0] = PetscCosReal(alpha)*x - PetscSinReal(alpha)*y; 235c4762a1bSJed Brown coords[i+1] = PetscSinReal(alpha)*x + PetscCosReal(alpha)*y; 236c4762a1bSJed Brown } 237c4762a1bSJed Brown ierr = VecRestoreArray(coordinates, &coords);CHKERRQ(ierr); 238c4762a1bSJed Brown ierr = DMSetCoordinates(*dm, coordinates);CHKERRQ(ierr); 239c4762a1bSJed Brown } 240c4762a1bSJed Brown ierr = DMViewFromOptions(*dm, NULL, "-dm_view");CHKERRQ(ierr); 241c4762a1bSJed Brown PetscFunctionReturn(0); 242c4762a1bSJed Brown } 243c4762a1bSJed Brown 244c4762a1bSJed Brown PetscErrorCode SetupProblem(DM dm, AppCtx *user) 245c4762a1bSJed Brown { 24645480ffeSMatthew G. Knepley PetscDS ds; 24745480ffeSMatthew G. Knepley PetscWeakForm wf; 24845480ffeSMatthew G. Knepley DMLabel label; 249c4762a1bSJed Brown Parameter *ctx; 25045480ffeSMatthew G. Knepley PetscInt id, bd; 251c4762a1bSJed Brown PetscErrorCode ierr; 252c4762a1bSJed Brown 253c4762a1bSJed Brown PetscFunctionBeginUser; 25445480ffeSMatthew G. Knepley ierr = PetscBagGetData(user->bag, (void **) &ctx);CHKERRQ(ierr); 25545480ffeSMatthew G. Knepley ierr = DMGetDS(dm, &ds);CHKERRQ(ierr); 25645480ffeSMatthew G. Knepley ierr = PetscDSSetResidual(ds, 0, NULL, f1_u);CHKERRQ(ierr); 25745480ffeSMatthew G. Knepley ierr = PetscDSSetResidual(ds, 1, f0_p, NULL);CHKERRQ(ierr); 25845480ffeSMatthew G. Knepley ierr = PetscDSSetJacobian(ds, 0, 0, NULL, NULL, NULL, g3_uu);CHKERRQ(ierr); 25945480ffeSMatthew G. Knepley ierr = PetscDSSetJacobian(ds, 0, 1, NULL, NULL, g2_up, NULL);CHKERRQ(ierr); 26045480ffeSMatthew G. Knepley ierr = PetscDSSetJacobian(ds, 1, 0, NULL, g1_pu, NULL, NULL);CHKERRQ(ierr); 26145480ffeSMatthew G. Knepley 26245480ffeSMatthew G. Knepley id = 2; 26345480ffeSMatthew G. Knepley ierr = DMGetLabel(dm, "marker", &label);CHKERRQ(ierr); 26445480ffeSMatthew G. Knepley ierr = DMAddBoundary(dm, DM_BC_NATURAL, "right wall", label, 1, &id, 0, 0, NULL, NULL, NULL, ctx, &bd);CHKERRQ(ierr); 26545480ffeSMatthew G. Knepley ierr = PetscDSGetBoundary(ds, bd, &wf, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL);CHKERRQ(ierr); 26606ad1575SMatthew G. Knepley ierr = PetscWeakFormSetIndexBdResidual(wf, label, id, 0, 0, 0, f0_bd_u, 0, NULL);CHKERRQ(ierr); 267c4762a1bSJed Brown /* Setup constants */ 268c4762a1bSJed Brown { 269c4762a1bSJed Brown Parameter *param; 270c4762a1bSJed Brown PetscScalar constants[4]; 271c4762a1bSJed Brown 272c4762a1bSJed Brown ierr = PetscBagGetData(user->bag, (void **) ¶m);CHKERRQ(ierr); 273c4762a1bSJed Brown 274c4762a1bSJed Brown constants[0] = param->Delta; 275c4762a1bSJed Brown constants[1] = param->nu; 276c4762a1bSJed Brown constants[2] = param->u_0; 277c4762a1bSJed Brown constants[3] = param->alpha; 27845480ffeSMatthew G. Knepley ierr = PetscDSSetConstants(ds, 4, constants);CHKERRQ(ierr); 279c4762a1bSJed Brown } 280c4762a1bSJed Brown /* Setup Boundary Conditions */ 281c4762a1bSJed Brown id = 3; 28245480ffeSMatthew G. Knepley ierr = DMAddBoundary(dm, DM_BC_ESSENTIAL, "top wall", label, 1, &id, 0, 0, NULL, (void (*)(void)) wall_velocity, NULL, ctx, NULL);CHKERRQ(ierr); 283c4762a1bSJed Brown id = 1; 28445480ffeSMatthew G. Knepley ierr = DMAddBoundary(dm, DM_BC_ESSENTIAL, "bottom wall", label, 1, &id, 0, 0, NULL, (void (*)(void)) wall_velocity, NULL, ctx, NULL);CHKERRQ(ierr); 285c4762a1bSJed Brown /* Setup exact solution */ 28630602db0SMatthew G. Knepley ierr = PetscDSSetExactSolution(ds, 0, quadratic_u, ctx);CHKERRQ(ierr); 28730602db0SMatthew G. Knepley ierr = PetscDSSetExactSolution(ds, 1, linear_p, ctx);CHKERRQ(ierr); 288c4762a1bSJed Brown PetscFunctionReturn(0); 289c4762a1bSJed Brown } 290c4762a1bSJed Brown 291c4762a1bSJed Brown PetscErrorCode SetupDiscretization(DM dm, AppCtx *user) 292c4762a1bSJed Brown { 293c4762a1bSJed Brown DM cdm = dm; 294c4762a1bSJed Brown PetscFE fe[2]; 295c4762a1bSJed Brown Parameter *param; 29630602db0SMatthew G. Knepley PetscBool simplex; 29730602db0SMatthew G. Knepley PetscInt dim; 298c4762a1bSJed Brown MPI_Comm comm; 299c4762a1bSJed Brown PetscErrorCode ierr; 300c4762a1bSJed Brown 301c4762a1bSJed Brown PetscFunctionBeginUser; 30230602db0SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 30330602db0SMatthew G. Knepley ierr = DMPlexIsSimplex(dm, &simplex);CHKERRQ(ierr); 304c4762a1bSJed Brown ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 30530602db0SMatthew G. Knepley ierr = PetscFECreateDefault(comm, dim, dim, simplex, "vel_", PETSC_DEFAULT, &fe[0]);CHKERRQ(ierr); 306c4762a1bSJed Brown ierr = PetscObjectSetName((PetscObject) fe[0], "velocity");CHKERRQ(ierr); 30730602db0SMatthew G. Knepley ierr = PetscFECreateDefault(comm, dim, 1, simplex, "pres_", PETSC_DEFAULT, &fe[1]);CHKERRQ(ierr); 308c4762a1bSJed Brown ierr = PetscFECopyQuadrature(fe[0], fe[1]);CHKERRQ(ierr); 309c4762a1bSJed Brown ierr = PetscObjectSetName((PetscObject) fe[1], "pressure");CHKERRQ(ierr); 310c4762a1bSJed Brown /* Set discretization and boundary conditions for each mesh */ 311c4762a1bSJed Brown ierr = DMSetField(dm, 0, NULL, (PetscObject) fe[0]);CHKERRQ(ierr); 312c4762a1bSJed Brown ierr = DMSetField(dm, 1, NULL, (PetscObject) fe[1]);CHKERRQ(ierr); 313c4762a1bSJed Brown ierr = DMCreateDS(dm);CHKERRQ(ierr); 314c4762a1bSJed Brown ierr = SetupProblem(dm, user);CHKERRQ(ierr); 315c4762a1bSJed Brown ierr = PetscBagGetData(user->bag, (void **) ¶m);CHKERRQ(ierr); 316c4762a1bSJed Brown while (cdm) { 317c4762a1bSJed Brown ierr = DMCopyDisc(dm, cdm);CHKERRQ(ierr); 318c4762a1bSJed Brown ierr = DMPlexCreateBasisRotation(cdm, param->alpha, 0.0, 0.0);CHKERRQ(ierr); 319c4762a1bSJed Brown ierr = DMGetCoarseDM(cdm, &cdm);CHKERRQ(ierr); 320c4762a1bSJed Brown } 321c4762a1bSJed Brown ierr = PetscFEDestroy(&fe[0]);CHKERRQ(ierr); 322c4762a1bSJed Brown ierr = PetscFEDestroy(&fe[1]);CHKERRQ(ierr); 323c4762a1bSJed Brown PetscFunctionReturn(0); 324c4762a1bSJed Brown } 325c4762a1bSJed Brown 326c4762a1bSJed Brown int main(int argc, char **argv) 327c4762a1bSJed Brown { 328c4762a1bSJed Brown SNES snes; /* nonlinear solver */ 329c4762a1bSJed Brown DM dm; /* problem definition */ 330c4762a1bSJed Brown Vec u, r; /* solution and residual */ 331c4762a1bSJed Brown AppCtx user; /* user-defined work context */ 332c4762a1bSJed Brown PetscErrorCode ierr; 333c4762a1bSJed Brown 334c4762a1bSJed Brown ierr = PetscInitialize(&argc, &argv, NULL,help);if (ierr) return ierr; 335c4762a1bSJed Brown ierr = PetscBagCreate(PETSC_COMM_WORLD, sizeof(Parameter), &user.bag);CHKERRQ(ierr); 336c4762a1bSJed Brown ierr = SetupParameters(&user);CHKERRQ(ierr); 33730602db0SMatthew G. Knepley ierr = PetscBagSetFromOptions(user.bag);CHKERRQ(ierr); 338c4762a1bSJed Brown ierr = SNESCreate(PETSC_COMM_WORLD, &snes);CHKERRQ(ierr); 339c4762a1bSJed Brown ierr = CreateMesh(PETSC_COMM_WORLD, &user, &dm);CHKERRQ(ierr); 340c4762a1bSJed Brown ierr = SNESSetDM(snes, dm);CHKERRQ(ierr); 341c4762a1bSJed Brown ierr = DMSetApplicationContext(dm, &user);CHKERRQ(ierr); 342c4762a1bSJed Brown /* Setup problem */ 343c4762a1bSJed Brown ierr = SetupDiscretization(dm, &user);CHKERRQ(ierr); 344c4762a1bSJed Brown ierr = DMPlexCreateClosureIndex(dm, NULL);CHKERRQ(ierr); 345c4762a1bSJed Brown 346c4762a1bSJed Brown ierr = DMCreateGlobalVector(dm, &u);CHKERRQ(ierr); 347c4762a1bSJed Brown ierr = VecDuplicate(u, &r);CHKERRQ(ierr); 348c4762a1bSJed Brown 349c4762a1bSJed Brown ierr = DMPlexSetSNESLocalFEM(dm,&user,&user,&user);CHKERRQ(ierr); 350c4762a1bSJed Brown 351c4762a1bSJed Brown ierr = SNESSetFromOptions(snes);CHKERRQ(ierr); 352c4762a1bSJed Brown 353c4762a1bSJed Brown { 35430602db0SMatthew G. Knepley PetscDS ds; 35530602db0SMatthew G. Knepley PetscSimplePointFunc exactFuncs[2]; 356c4762a1bSJed Brown void *ctxs[2]; 357c4762a1bSJed Brown 35830602db0SMatthew G. Knepley ierr = DMGetDS(dm, &ds);CHKERRQ(ierr); 35930602db0SMatthew G. Knepley ierr = PetscDSGetExactSolution(ds, 0, &exactFuncs[0], &ctxs[0]);CHKERRQ(ierr); 36030602db0SMatthew G. Knepley ierr = PetscDSGetExactSolution(ds, 1, &exactFuncs[1], &ctxs[1]);CHKERRQ(ierr); 36130602db0SMatthew G. Knepley ierr = DMProjectFunction(dm, 0.0, exactFuncs, ctxs, INSERT_ALL_VALUES, u);CHKERRQ(ierr); 362c4762a1bSJed Brown ierr = PetscObjectSetName((PetscObject) u, "Exact Solution");CHKERRQ(ierr); 363c4762a1bSJed Brown ierr = VecViewFromOptions(u, NULL, "-exact_vec_view");CHKERRQ(ierr); 364c4762a1bSJed Brown } 365348a1646SMatthew G. Knepley ierr = DMSNESCheckFromOptions(snes, u);CHKERRQ(ierr); 366c4762a1bSJed Brown ierr = VecSet(u, 0.0);CHKERRQ(ierr); 367c4762a1bSJed Brown ierr = PetscObjectSetName((PetscObject) u, "Solution");CHKERRQ(ierr); 368c4762a1bSJed Brown ierr = SNESSolve(snes, NULL, u);CHKERRQ(ierr); 369c4762a1bSJed Brown ierr = VecViewFromOptions(u, NULL, "-sol_vec_view");CHKERRQ(ierr); 370c4762a1bSJed Brown 371c4762a1bSJed Brown ierr = VecDestroy(&u);CHKERRQ(ierr); 372c4762a1bSJed Brown ierr = VecDestroy(&r);CHKERRQ(ierr); 373c4762a1bSJed Brown ierr = DMDestroy(&dm);CHKERRQ(ierr); 374c4762a1bSJed Brown ierr = SNESDestroy(&snes);CHKERRQ(ierr); 375c4762a1bSJed Brown ierr = PetscBagDestroy(&user.bag);CHKERRQ(ierr); 376c4762a1bSJed Brown ierr = PetscFinalize(); 377c4762a1bSJed Brown return ierr; 378c4762a1bSJed Brown } 379c4762a1bSJed Brown 380c4762a1bSJed Brown /*TEST 381c4762a1bSJed Brown 382c4762a1bSJed Brown # Convergence 383c4762a1bSJed Brown test: 384c4762a1bSJed Brown suffix: 2d_quad_q1_p0_conv 385c4762a1bSJed Brown requires: !single 38630602db0SMatthew G. Knepley args: -dm_plex_simplex 0 -dm_plex_separate_marker -dm_refine 1 \ 387c4762a1bSJed Brown -vel_petscspace_degree 1 -pres_petscspace_degree 0 \ 388c4762a1bSJed Brown -snes_convergence_estimate -convest_num_refine 2 -snes_error_if_not_converged \ 389c4762a1bSJed Brown -ksp_type fgmres -ksp_gmres_restart 10 -ksp_rtol 1.0e-9 -ksp_error_if_not_converged \ 390c4762a1bSJed Brown -pc_type fieldsplit -pc_fieldsplit_type schur -pc_fieldsplit_schur_factorization_type full \ 391c4762a1bSJed Brown -fieldsplit_velocity_pc_type lu \ 392c4762a1bSJed Brown -fieldsplit_pressure_ksp_rtol 1e-10 -fieldsplit_pressure_pc_type jacobi 393c4762a1bSJed Brown test: 394c4762a1bSJed Brown suffix: 2d_quad_q1_p0_conv_u0 395c4762a1bSJed Brown requires: !single 39630602db0SMatthew G. Knepley args: -dm_plex_simplex 0 -dm_plex_separate_marker -dm_refine 1 -u_0 0.125 \ 397c4762a1bSJed Brown -vel_petscspace_degree 1 -pres_petscspace_degree 0 \ 398c4762a1bSJed Brown -snes_convergence_estimate -convest_num_refine 2 -snes_error_if_not_converged \ 399c4762a1bSJed Brown -ksp_type fgmres -ksp_gmres_restart 10 -ksp_rtol 1.0e-9 -ksp_error_if_not_converged \ 400c4762a1bSJed Brown -pc_type fieldsplit -pc_fieldsplit_type schur -pc_fieldsplit_schur_factorization_type full \ 401c4762a1bSJed Brown -fieldsplit_velocity_pc_type lu \ 402c4762a1bSJed Brown -fieldsplit_pressure_ksp_rtol 1e-10 -fieldsplit_pressure_pc_type jacobi 403c4762a1bSJed Brown test: 404c4762a1bSJed Brown suffix: 2d_quad_q1_p0_conv_u0_alpha 405c4762a1bSJed Brown requires: !single 40630602db0SMatthew G. Knepley args: -dm_plex_simplex 0 -dm_plex_separate_marker -dm_refine 1 -u_0 0.125 -alpha 0.3927 \ 407c4762a1bSJed Brown -vel_petscspace_degree 1 -pres_petscspace_degree 0 \ 408c4762a1bSJed Brown -snes_convergence_estimate -convest_num_refine 2 -snes_error_if_not_converged \ 409c4762a1bSJed Brown -ksp_type fgmres -ksp_gmres_restart 10 -ksp_rtol 1.0e-9 -ksp_error_if_not_converged \ 410c4762a1bSJed Brown -pc_type fieldsplit -pc_fieldsplit_type schur -pc_fieldsplit_schur_factorization_type full \ 411c4762a1bSJed Brown -fieldsplit_velocity_pc_type lu \ 412c4762a1bSJed Brown -fieldsplit_pressure_ksp_rtol 1e-10 -fieldsplit_pressure_pc_type jacobi 413c4762a1bSJed Brown test: 414c4762a1bSJed Brown suffix: 2d_quad_q1_p0_conv_gmg_vanka 415c4762a1bSJed Brown requires: !single long_runtime 41630602db0SMatthew G. Knepley args: -dm_plex_simplex 0 -dm_plex_separate_marker -dm_plex_box_faces 2,2 -dm_refine_hierarchy 1 \ 417c4762a1bSJed Brown -vel_petscspace_degree 1 -pres_petscspace_degree 0 \ 418c4762a1bSJed Brown -snes_convergence_estimate -convest_num_refine 1 -snes_error_if_not_converged \ 419c4762a1bSJed Brown -ksp_type fgmres -ksp_gmres_restart 10 -ksp_rtol 1.0e-9 -ksp_error_if_not_converged \ 420c4762a1bSJed Brown -pc_type fieldsplit -pc_fieldsplit_type schur -pc_fieldsplit_schur_factorization_type full \ 421c4762a1bSJed Brown -fieldsplit_velocity_pc_type mg \ 422c4762a1bSJed Brown -fieldsplit_velocity_mg_levels_pc_type patch -fieldsplit_velocity_mg_levels_pc_patch_exclude_subspaces 1 \ 423c4762a1bSJed Brown -fieldsplit_velocity_mg_levels_pc_patch_construct_codim 0 -fieldsplit_velocity_mg_levels_pc_patch_construct_type vanka \ 424c4762a1bSJed Brown -fieldsplit_pressure_ksp_rtol 1e-5 -fieldsplit_pressure_pc_type jacobi 425c4762a1bSJed Brown test: 426c4762a1bSJed Brown suffix: 2d_tri_p2_p1_conv 427c4762a1bSJed Brown requires: triangle !single 428c4762a1bSJed Brown args: -dm_plex_separate_marker -dm_refine 1 \ 429c4762a1bSJed Brown -vel_petscspace_degree 2 -pres_petscspace_degree 1 \ 430c4762a1bSJed Brown -dmsnes_check .001 -snes_error_if_not_converged \ 431c4762a1bSJed Brown -ksp_type fgmres -ksp_gmres_restart 10 -ksp_rtol 1.0e-9 -ksp_error_if_not_converged \ 432c4762a1bSJed Brown -pc_type fieldsplit -pc_fieldsplit_type schur -pc_fieldsplit_schur_factorization_type full \ 433c4762a1bSJed Brown -fieldsplit_velocity_pc_type lu \ 434c4762a1bSJed Brown -fieldsplit_pressure_ksp_rtol 1e-10 -fieldsplit_pressure_pc_type jacobi 435c4762a1bSJed Brown test: 436c4762a1bSJed Brown suffix: 2d_tri_p2_p1_conv_u0_alpha 437c4762a1bSJed Brown requires: triangle !single 438c4762a1bSJed Brown args: -dm_plex_separate_marker -dm_refine 0 -u_0 0.125 -alpha 0.3927 \ 439c4762a1bSJed Brown -vel_petscspace_degree 2 -pres_petscspace_degree 1 \ 440c4762a1bSJed Brown -dmsnes_check .001 -snes_error_if_not_converged \ 441c4762a1bSJed Brown -ksp_type fgmres -ksp_gmres_restart 10 -ksp_rtol 1.0e-9 -ksp_error_if_not_converged \ 442c4762a1bSJed Brown -pc_type fieldsplit -pc_fieldsplit_type schur -pc_fieldsplit_schur_factorization_type full \ 443c4762a1bSJed Brown -fieldsplit_velocity_pc_type lu \ 444c4762a1bSJed Brown -fieldsplit_pressure_ksp_rtol 1e-10 -fieldsplit_pressure_pc_type jacobi 445c4762a1bSJed Brown test: 446c4762a1bSJed Brown suffix: 2d_tri_p2_p1_conv_gmg_vcycle 447c4762a1bSJed Brown requires: triangle !single 44830602db0SMatthew G. Knepley args: -dm_plex_separate_marker -dm_plex_box_faces 2,2 -dm_refine_hierarchy 1 \ 449c4762a1bSJed Brown -vel_petscspace_degree 2 -pres_petscspace_degree 1 \ 450c4762a1bSJed Brown -dmsnes_check .001 -snes_error_if_not_converged \ 451c4762a1bSJed Brown -ksp_type fgmres -ksp_gmres_restart 10 -ksp_rtol 1.0e-9 -ksp_error_if_not_converged \ 452c4762a1bSJed Brown -pc_type fieldsplit -pc_fieldsplit_type schur -pc_fieldsplit_schur_factorization_type full \ 453c4762a1bSJed Brown -fieldsplit_velocity_pc_type mg \ 454c4762a1bSJed Brown -fieldsplit_pressure_ksp_rtol 1e-10 -fieldsplit_pressure_pc_type jacobi 455c4762a1bSJed Brown TEST*/ 456