xref: /petsc/src/snes/tutorials/ex71.c (revision 348a1646b1a7771dc468a628d08efb39f735eb8e)
1c4762a1bSJed Brown static char help[] = "Poiseuille Flow in 2d and 3d channels with finite elements.\n\
2c4762a1bSJed Brown We solve the Poiseuille flow problem in a rectangular\n\
3c4762a1bSJed Brown domain, using a parallel unstructured mesh (DMPLEX) to discretize it.\n\n\n";
4c4762a1bSJed Brown 
5c4762a1bSJed Brown /*F
6c4762a1bSJed Brown A Poiseuille flow is a steady-state isoviscous Stokes flow in a pipe of constant cross-section. We discretize using the
7c4762a1bSJed Brown finite element method on an unstructured mesh. The weak form equations are
8c4762a1bSJed Brown \begin{align*}
9c4762a1bSJed Brown   < \nabla v, \nu (\nabla u + {\nabla u}^T) > - < \nabla\cdot v, p > + < v, \Delta \hat n >_{\Gamma_o} = 0
10c4762a1bSJed Brown   < q, \nabla\cdot u >                                                                                 = 0
11c4762a1bSJed Brown \end{align*}
12c4762a1bSJed Brown where $\nu$ is the kinematic viscosity, $\Delta$ is the pressure drop per unit length, assuming that pressure is 0 on
13c4762a1bSJed Brown the left edge, and $\Gamma_o$ is the outlet boundary at the right edge of the pipe. The normal velocity will be zero at
14c4762a1bSJed Brown the wall, but we will allow a fixed tangential velocity $u_0$.
15c4762a1bSJed Brown 
16c4762a1bSJed Brown In order to test our global to local basis transformation, we will allow the pipe to be at an angle $\alpha$ to the
17c4762a1bSJed Brown coordinate axes.
18c4762a1bSJed Brown 
19c4762a1bSJed Brown For visualization, use
20c4762a1bSJed Brown 
21c4762a1bSJed Brown   -dm_view hdf5:$PWD/sol.h5 -sol_vec_view hdf5:$PWD/sol.h5::append -exact_vec_view hdf5:$PWD/sol.h5::append
22c4762a1bSJed Brown F*/
23c4762a1bSJed Brown 
24c4762a1bSJed Brown #include <petscdmplex.h>
25c4762a1bSJed Brown #include <petscsnes.h>
26c4762a1bSJed Brown #include <petscds.h>
27c4762a1bSJed Brown #include <petscbag.h>
28c4762a1bSJed Brown 
29c4762a1bSJed Brown typedef struct {
30c4762a1bSJed Brown   PetscReal Delta; /* Pressure drop per unit length */
31c4762a1bSJed Brown   PetscReal nu;    /* Kinematic viscosity */
32c4762a1bSJed Brown   PetscReal u_0;   /* Tangential velocity at the wall */
33c4762a1bSJed Brown   PetscReal alpha; /* Angle of pipe wall to x-axis */
34c4762a1bSJed Brown } Parameter;
35c4762a1bSJed Brown 
36c4762a1bSJed Brown typedef struct {
37c4762a1bSJed Brown   /* Domain and mesh definition */
38c4762a1bSJed Brown   PetscInt  dim;               /* The topological mesh dimension */
39c4762a1bSJed Brown   PetscBool simplex;           /* Use simplices or tensor product cells */
40c4762a1bSJed Brown   PetscInt  cells[3];          /* The initial domain division */
41c4762a1bSJed Brown   /* Problem definition */
42c4762a1bSJed Brown   PetscBag  bag;               /* Holds problem parameters */
43c4762a1bSJed Brown   PetscErrorCode (**exactFuncs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nf, PetscScalar *u, void *ctx);
44c4762a1bSJed Brown } AppCtx;
45c4762a1bSJed Brown 
46c4762a1bSJed Brown /*
47c4762a1bSJed Brown   In 2D, plane Poiseuille flow has exact solution:
48c4762a1bSJed Brown 
49c4762a1bSJed Brown     u = \Delta/(2 \nu) y (1 - y) + u_0
50c4762a1bSJed Brown     v = 0
51c4762a1bSJed Brown     p = -\Delta x
52c4762a1bSJed Brown     f = 0
53c4762a1bSJed Brown 
54c4762a1bSJed Brown   so that
55c4762a1bSJed Brown 
56c4762a1bSJed Brown     -\nu \Delta u + \nabla p + f = <\Delta, 0> + <-\Delta, 0> + <0, 0> = 0
57c4762a1bSJed Brown     \nabla \cdot u               = 0 + 0                               = 0
58c4762a1bSJed Brown 
59c4762a1bSJed Brown   In 3D we use exact solution:
60c4762a1bSJed Brown 
61c4762a1bSJed Brown     u = \Delta/(4 \nu) (y (1 - y) + z (1 - z)) + u_0
62c4762a1bSJed Brown     v = 0
63c4762a1bSJed Brown     w = 0
64c4762a1bSJed Brown     p = -\Delta x
65c4762a1bSJed Brown     f = 0
66c4762a1bSJed Brown 
67c4762a1bSJed Brown   so that
68c4762a1bSJed Brown 
69c4762a1bSJed Brown     -\nu \Delta u + \nabla p + f = <Delta, 0, 0> + <-Delta, 0, 0> + <0, 0, 0> = 0
70c4762a1bSJed Brown     \nabla \cdot u               = 0 + 0 + 0                                  = 0
71c4762a1bSJed Brown 
72c4762a1bSJed Brown   Note that these functions use coordinates X in the global (rotated) frame
73c4762a1bSJed Brown */
74c4762a1bSJed Brown PetscErrorCode quadratic_u(PetscInt dim, PetscReal time, const PetscReal X[], PetscInt Nf, PetscScalar *u, void *ctx)
75c4762a1bSJed Brown {
76c4762a1bSJed Brown   Parameter *param = (Parameter *) ctx;
77c4762a1bSJed Brown   PetscReal  Delta = param->Delta;
78c4762a1bSJed Brown   PetscReal  nu    = param->nu;
79c4762a1bSJed Brown   PetscReal  u_0   = param->u_0;
80c4762a1bSJed Brown   PetscReal  fac   = (PetscReal) (dim - 1);
81c4762a1bSJed Brown   PetscInt   d;
82c4762a1bSJed Brown 
83c4762a1bSJed Brown   u[0] = u_0;
84c4762a1bSJed Brown   for (d = 1; d < dim; ++d) u[0] += Delta/(fac * 2.0*nu) * X[d] * (1.0 - X[d]);
85c4762a1bSJed Brown   for (d = 1; d < dim; ++d) u[d]  = 0.0;
86c4762a1bSJed Brown   return 0;
87c4762a1bSJed Brown }
88c4762a1bSJed Brown 
89c4762a1bSJed Brown PetscErrorCode linear_p(PetscInt dim, PetscReal time, const PetscReal X[], PetscInt Nf, PetscScalar *p, void *ctx)
90c4762a1bSJed Brown {
91c4762a1bSJed Brown   Parameter *param = (Parameter *) ctx;
92c4762a1bSJed Brown   PetscReal  Delta = param->Delta;
93c4762a1bSJed Brown 
94c4762a1bSJed Brown   p[0] = -Delta * X[0];
95c4762a1bSJed Brown   return 0;
96c4762a1bSJed Brown }
97c4762a1bSJed Brown 
98c4762a1bSJed Brown PetscErrorCode wall_velocity(PetscInt dim, PetscReal time, const PetscReal X[], PetscInt Nf, PetscScalar *u, void *ctx)
99c4762a1bSJed Brown {
100c4762a1bSJed Brown   Parameter *param = (Parameter *) ctx;
101c4762a1bSJed Brown   PetscReal  u_0   = param->u_0;
102c4762a1bSJed Brown   PetscInt   d;
103c4762a1bSJed Brown 
104c4762a1bSJed Brown   u[0] = u_0;
105c4762a1bSJed Brown   for (d = 1; d < dim; ++d) u[d] = 0.0;
106c4762a1bSJed Brown   return 0;
107c4762a1bSJed Brown }
108c4762a1bSJed Brown 
109c4762a1bSJed Brown /* gradU[comp*dim+d] = {u_x, u_y, v_x, v_y} or {u_x, u_y, u_z, v_x, v_y, v_z, w_x, w_y, w_z}
110c4762a1bSJed Brown    u[Ncomp]          = {p} */
111c4762a1bSJed Brown void f1_u(PetscInt dim, PetscInt Nf, PetscInt NfAux,
112c4762a1bSJed Brown           const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
113c4762a1bSJed Brown           const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
114c4762a1bSJed Brown           PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f1[])
115c4762a1bSJed Brown {
116c4762a1bSJed Brown   const PetscReal nu = PetscRealPart(constants[1]);
117c4762a1bSJed Brown   const PetscInt  Nc = dim;
118c4762a1bSJed Brown   PetscInt        c, d;
119c4762a1bSJed Brown 
120c4762a1bSJed Brown   for (c = 0; c < Nc; ++c) {
121c4762a1bSJed Brown     for (d = 0; d < dim; ++d) {
122c4762a1bSJed Brown       /* f1[c*dim+d] = 0.5*nu*(u_x[c*dim+d] + u_x[d*dim+c]); */
123c4762a1bSJed Brown       f1[c*dim+d] = nu*u_x[c*dim+d];
124c4762a1bSJed Brown     }
125c4762a1bSJed Brown     f1[c*dim+c] -= u[uOff[1]];
126c4762a1bSJed Brown   }
127c4762a1bSJed Brown }
128c4762a1bSJed Brown 
129c4762a1bSJed Brown /* gradU[comp*dim+d] = {u_x, u_y, v_x, v_y} or {u_x, u_y, u_z, v_x, v_y, v_z, w_x, w_y, w_z} */
130c4762a1bSJed Brown void f0_p(PetscInt dim, PetscInt Nf, PetscInt NfAux,
131c4762a1bSJed Brown           const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
132c4762a1bSJed Brown           const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
133c4762a1bSJed Brown           PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[])
134c4762a1bSJed Brown {
135c4762a1bSJed Brown   PetscInt d;
136c4762a1bSJed Brown   for (d = 0, f0[0] = 0.0; d < dim; ++d) f0[0] += u_x[d*dim+d];
137c4762a1bSJed Brown }
138c4762a1bSJed Brown 
139c4762a1bSJed Brown /* Residual functions are in reference coordinates */
140c4762a1bSJed Brown static void f0_bd_u(PetscInt dim, PetscInt Nf, PetscInt NfAux,
141c4762a1bSJed Brown                     const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
142c4762a1bSJed Brown                     const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
143c4762a1bSJed Brown                     PetscReal t, const PetscReal x[], const PetscReal n[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[])
144c4762a1bSJed Brown {
145c4762a1bSJed Brown   const PetscReal Delta = PetscRealPart(constants[0]);
146c4762a1bSJed Brown   PetscReal       alpha = PetscRealPart(constants[3]);
147c4762a1bSJed Brown   PetscReal       X     = PetscCosReal(alpha)*x[0] + PetscSinReal(alpha)*x[1];
148c4762a1bSJed Brown   PetscInt        d;
149c4762a1bSJed Brown 
150c4762a1bSJed Brown   for (d = 0; d < dim; ++d) {
151c4762a1bSJed Brown     f0[d] = -Delta * X * n[d];
152c4762a1bSJed Brown   }
153c4762a1bSJed Brown }
154c4762a1bSJed Brown 
155c4762a1bSJed Brown /* < q, \nabla\cdot u >
156c4762a1bSJed Brown    NcompI = 1, NcompJ = dim */
157c4762a1bSJed Brown void g1_pu(PetscInt dim, PetscInt Nf, PetscInt NfAux,
158c4762a1bSJed Brown            const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
159c4762a1bSJed Brown            const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
160c4762a1bSJed Brown            PetscReal t, PetscReal u_tShift, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar g1[])
161c4762a1bSJed Brown {
162c4762a1bSJed Brown   PetscInt d;
163c4762a1bSJed Brown   for (d = 0; d < dim; ++d) g1[d*dim+d] = 1.0; /* \frac{\partial\phi^{u_d}}{\partial x_d} */
164c4762a1bSJed Brown }
165c4762a1bSJed Brown 
166c4762a1bSJed Brown /* -< \nabla\cdot v, p >
167c4762a1bSJed Brown     NcompI = dim, NcompJ = 1 */
168c4762a1bSJed Brown void g2_up(PetscInt dim, PetscInt Nf, PetscInt NfAux,
169c4762a1bSJed Brown            const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
170c4762a1bSJed Brown            const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
171c4762a1bSJed Brown            PetscReal t, PetscReal u_tShift, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar g2[])
172c4762a1bSJed Brown {
173c4762a1bSJed Brown   PetscInt d;
174c4762a1bSJed Brown   for (d = 0; d < dim; ++d) g2[d*dim+d] = -1.0; /* \frac{\partial\psi^{u_d}}{\partial x_d} */
175c4762a1bSJed Brown }
176c4762a1bSJed Brown 
177c4762a1bSJed Brown /* < \nabla v, \nabla u + {\nabla u}^T >
178c4762a1bSJed Brown    This just gives \nabla u, give the perdiagonal for the transpose */
179c4762a1bSJed Brown void g3_uu(PetscInt dim, PetscInt Nf, PetscInt NfAux,
180c4762a1bSJed Brown            const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
181c4762a1bSJed Brown            const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
182c4762a1bSJed Brown            PetscReal t, PetscReal u_tShift, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar g3[])
183c4762a1bSJed Brown {
184c4762a1bSJed Brown   const PetscReal nu = PetscRealPart(constants[1]);
185c4762a1bSJed Brown   const PetscInt  Nc = dim;
186c4762a1bSJed Brown   PetscInt        c, d;
187c4762a1bSJed Brown 
188c4762a1bSJed Brown   for (c = 0; c < Nc; ++c) {
189c4762a1bSJed Brown     for (d = 0; d < dim; ++d) {
190c4762a1bSJed Brown       g3[((c*Nc+c)*dim+d)*dim+d] = nu;
191c4762a1bSJed Brown     }
192c4762a1bSJed Brown   }
193c4762a1bSJed Brown }
194c4762a1bSJed Brown 
195c4762a1bSJed Brown PetscErrorCode ProcessOptions(MPI_Comm comm, AppCtx *options)
196c4762a1bSJed Brown {
197c4762a1bSJed Brown   PetscInt       n = 3;
198c4762a1bSJed Brown   PetscErrorCode ierr;
199c4762a1bSJed Brown 
200c4762a1bSJed Brown   PetscFunctionBeginUser;
201c4762a1bSJed Brown   options->dim      = 2;
202c4762a1bSJed Brown   options->simplex  = PETSC_TRUE;
203c4762a1bSJed Brown   options->cells[0] = 3;
204c4762a1bSJed Brown   options->cells[1] = 3;
205c4762a1bSJed Brown   options->cells[2] = 3;
206c4762a1bSJed Brown 
207c4762a1bSJed Brown   ierr = PetscOptionsBegin(comm, "", "Poiseuille Flow Options", "DMPLEX");CHKERRQ(ierr);
208c4762a1bSJed Brown   ierr = PetscOptionsInt("-dim", "The topological mesh dimension", "ex62.c", options->dim, &options->dim, NULL);CHKERRQ(ierr);
209c4762a1bSJed Brown   ierr = PetscOptionsBool("-simplex", "Use simplices or tensor product cells", "ex62.c", options->simplex, &options->simplex, NULL);CHKERRQ(ierr);
210c4762a1bSJed Brown   ierr = PetscOptionsIntArray("-cells", "The initial mesh division", "ex62.c", options->cells, &n, NULL);CHKERRQ(ierr);
211c4762a1bSJed Brown   ierr = PetscOptionsEnd();
212c4762a1bSJed Brown   PetscFunctionReturn(0);
213c4762a1bSJed Brown }
214c4762a1bSJed Brown 
215c4762a1bSJed Brown static PetscErrorCode SetupParameters(AppCtx *user)
216c4762a1bSJed Brown {
217c4762a1bSJed Brown   PetscBag       bag;
218c4762a1bSJed Brown   Parameter     *p;
219c4762a1bSJed Brown   PetscErrorCode ierr;
220c4762a1bSJed Brown 
221c4762a1bSJed Brown   PetscFunctionBeginUser;
222c4762a1bSJed Brown   /* setup PETSc parameter bag */
223c4762a1bSJed Brown   ierr = PetscBagGetData(user->bag, (void **) &p);CHKERRQ(ierr);
224c4762a1bSJed Brown   ierr = PetscBagSetName(user->bag, "par", "Poiseuille flow parameters");CHKERRQ(ierr);
225c4762a1bSJed Brown   bag  = user->bag;
226c4762a1bSJed Brown   ierr = PetscBagRegisterReal(bag, &p->Delta, 1.0, "Delta", "Pressure drop per unit length");CHKERRQ(ierr);
227c4762a1bSJed Brown   ierr = PetscBagRegisterReal(bag, &p->nu,    1.0, "nu",    "Kinematic viscosity");CHKERRQ(ierr);
228c4762a1bSJed Brown   ierr = PetscBagRegisterReal(bag, &p->u_0,   0.0, "u_0",   "Tangential velocity at the wall");CHKERRQ(ierr);
229c4762a1bSJed Brown   ierr = PetscBagRegisterReal(bag, &p->alpha, 0.0, "alpha", "Angle of pipe wall to x-axis");CHKERRQ(ierr);
230c4762a1bSJed Brown   PetscFunctionReturn(0);
231c4762a1bSJed Brown }
232c4762a1bSJed Brown 
233c4762a1bSJed Brown PetscErrorCode CreateMesh(MPI_Comm comm, AppCtx *user, DM *dm)
234c4762a1bSJed Brown {
235c4762a1bSJed Brown   PetscInt       dim = user->dim;
236c4762a1bSJed Brown   PetscErrorCode ierr;
237c4762a1bSJed Brown 
238c4762a1bSJed Brown   PetscFunctionBeginUser;
239c4762a1bSJed Brown   ierr = DMPlexCreateBoxMesh(comm, dim, user->simplex, user->cells, NULL, NULL, NULL, PETSC_TRUE, dm);CHKERRQ(ierr);
240c4762a1bSJed Brown   {
241c4762a1bSJed Brown     Parameter   *param;
242c4762a1bSJed Brown     Vec          coordinates;
243c4762a1bSJed Brown     PetscScalar *coords;
244c4762a1bSJed Brown     PetscReal    alpha;
245c4762a1bSJed Brown     PetscInt     cdim, N, bs, i;
246c4762a1bSJed Brown 
247c4762a1bSJed Brown     ierr = DMGetCoordinateDim(*dm, &cdim);CHKERRQ(ierr);
248c4762a1bSJed Brown     ierr = DMGetCoordinates(*dm, &coordinates);CHKERRQ(ierr);
249c4762a1bSJed Brown     ierr = VecGetLocalSize(coordinates, &N);CHKERRQ(ierr);
250c4762a1bSJed Brown     ierr = VecGetBlockSize(coordinates, &bs);CHKERRQ(ierr);
251c4762a1bSJed Brown     if (bs != cdim) SETERRQ2(comm, PETSC_ERR_ARG_WRONG, "Invalid coordinate blocksize %D != embedding dimension %D", bs, cdim);
252c4762a1bSJed Brown     ierr = VecGetArray(coordinates, &coords);CHKERRQ(ierr);
253c4762a1bSJed Brown     ierr = PetscBagGetData(user->bag, (void **) &param);CHKERRQ(ierr);
254c4762a1bSJed Brown     alpha = param->alpha;
255c4762a1bSJed Brown     for (i = 0; i < N; i += cdim) {
256c4762a1bSJed Brown       PetscScalar x = coords[i+0];
257c4762a1bSJed Brown       PetscScalar y = coords[i+1];
258c4762a1bSJed Brown 
259c4762a1bSJed Brown       coords[i+0] = PetscCosReal(alpha)*x - PetscSinReal(alpha)*y;
260c4762a1bSJed Brown       coords[i+1] = PetscSinReal(alpha)*x + PetscCosReal(alpha)*y;
261c4762a1bSJed Brown     }
262c4762a1bSJed Brown     ierr = VecRestoreArray(coordinates, &coords);CHKERRQ(ierr);
263c4762a1bSJed Brown     ierr = DMSetCoordinates(*dm, coordinates);CHKERRQ(ierr);
264c4762a1bSJed Brown   }
265c4762a1bSJed Brown   {
266c4762a1bSJed Brown     DM               pdm = NULL;
267c4762a1bSJed Brown     PetscPartitioner part;
268c4762a1bSJed Brown 
269c4762a1bSJed Brown     ierr = DMPlexGetPartitioner(*dm, &part);CHKERRQ(ierr);
270c4762a1bSJed Brown     ierr = PetscPartitionerSetFromOptions(part);CHKERRQ(ierr);
271c4762a1bSJed Brown     ierr = DMPlexDistribute(*dm, 0, NULL, &pdm);CHKERRQ(ierr);
272c4762a1bSJed Brown     if (pdm) {
273c4762a1bSJed Brown       ierr = DMDestroy(dm);CHKERRQ(ierr);
274c4762a1bSJed Brown       *dm  = pdm;
275c4762a1bSJed Brown     }
276c4762a1bSJed Brown   }
277c4762a1bSJed Brown   ierr = DMSetFromOptions(*dm);CHKERRQ(ierr);
278c4762a1bSJed Brown   ierr = DMViewFromOptions(*dm, NULL, "-dm_view");CHKERRQ(ierr);
279c4762a1bSJed Brown   PetscFunctionReturn(0);
280c4762a1bSJed Brown }
281c4762a1bSJed Brown 
282c4762a1bSJed Brown PetscErrorCode SetupProblem(DM dm, AppCtx *user)
283c4762a1bSJed Brown {
284c4762a1bSJed Brown   PetscDS        prob;
285c4762a1bSJed Brown   Parameter     *ctx;
286c4762a1bSJed Brown   PetscInt       id;
287c4762a1bSJed Brown   PetscErrorCode ierr;
288c4762a1bSJed Brown 
289c4762a1bSJed Brown   PetscFunctionBeginUser;
290c4762a1bSJed Brown   ierr = DMGetDS(dm, &prob);CHKERRQ(ierr);
291c4762a1bSJed Brown   ierr = PetscDSSetResidual(prob, 0, NULL, f1_u);CHKERRQ(ierr);
292c4762a1bSJed Brown   ierr = PetscDSSetResidual(prob, 1, f0_p, NULL);CHKERRQ(ierr);
293c4762a1bSJed Brown   ierr = PetscDSSetBdResidual(prob, 0, f0_bd_u, NULL);CHKERRQ(ierr);
294c4762a1bSJed Brown   ierr = PetscDSSetJacobian(prob, 0, 0, NULL, NULL,  NULL,  g3_uu);CHKERRQ(ierr);
295c4762a1bSJed Brown   ierr = PetscDSSetJacobian(prob, 0, 1, NULL, NULL,  g2_up, NULL);CHKERRQ(ierr);
296c4762a1bSJed Brown   ierr = PetscDSSetJacobian(prob, 1, 0, NULL, g1_pu, NULL,  NULL);CHKERRQ(ierr);
297c4762a1bSJed Brown   /* Setup constants */
298c4762a1bSJed Brown   {
299c4762a1bSJed Brown     Parameter  *param;
300c4762a1bSJed Brown     PetscScalar constants[4];
301c4762a1bSJed Brown 
302c4762a1bSJed Brown     ierr = PetscBagGetData(user->bag, (void **) &param);CHKERRQ(ierr);
303c4762a1bSJed Brown 
304c4762a1bSJed Brown     constants[0] = param->Delta;
305c4762a1bSJed Brown     constants[1] = param->nu;
306c4762a1bSJed Brown     constants[2] = param->u_0;
307c4762a1bSJed Brown     constants[3] = param->alpha;
308c4762a1bSJed Brown     ierr = PetscDSSetConstants(prob, 4, constants);CHKERRQ(ierr);
309c4762a1bSJed Brown   }
310c4762a1bSJed Brown   /* Setup Boundary Conditions */
311c4762a1bSJed Brown   ierr = PetscBagGetData(user->bag, (void **) &ctx);CHKERRQ(ierr);
312c4762a1bSJed Brown   id   = 3;
313408cafa0SMatthew G. Knepley   ierr = DMAddBoundary(dm, DM_BC_ESSENTIAL, "top wall",    "marker", 0, 0, NULL, (void (*)(void)) wall_velocity, 1, &id, ctx);CHKERRQ(ierr);
314c4762a1bSJed Brown   id   = 1;
315408cafa0SMatthew G. Knepley   ierr = DMAddBoundary(dm, DM_BC_ESSENTIAL, "bottom wall", "marker", 0, 0, NULL, (void (*)(void)) wall_velocity, 1, &id, ctx);CHKERRQ(ierr);
316c4762a1bSJed Brown   id   = 2;
317408cafa0SMatthew G. Knepley   ierr = DMAddBoundary(dm, DM_BC_NATURAL,   "right wall",  "marker", 0, 0, NULL, (void (*)(void)) NULL,          1, &id, ctx);CHKERRQ(ierr);
318c4762a1bSJed Brown   /* Setup exact solution */
319c4762a1bSJed Brown   user->exactFuncs[0] = quadratic_u;
320c4762a1bSJed Brown   user->exactFuncs[1] = linear_p;
321c4762a1bSJed Brown   ierr = PetscDSSetExactSolution(prob, 0, user->exactFuncs[0], ctx);CHKERRQ(ierr);
322c4762a1bSJed Brown   ierr = PetscDSSetExactSolution(prob, 1, user->exactFuncs[1], ctx);CHKERRQ(ierr);
323c4762a1bSJed Brown   PetscFunctionReturn(0);
324c4762a1bSJed Brown }
325c4762a1bSJed Brown 
326c4762a1bSJed Brown PetscErrorCode SetupDiscretization(DM dm, AppCtx *user)
327c4762a1bSJed Brown {
328c4762a1bSJed Brown   DM              cdm   = dm;
329c4762a1bSJed Brown   const PetscInt  dim   = user->dim;
330c4762a1bSJed Brown   PetscFE         fe[2];
331c4762a1bSJed Brown   Parameter      *param;
332c4762a1bSJed Brown   MPI_Comm        comm;
333c4762a1bSJed Brown   PetscErrorCode  ierr;
334c4762a1bSJed Brown 
335c4762a1bSJed Brown   PetscFunctionBeginUser;
336c4762a1bSJed Brown   /* Create finite element */
337c4762a1bSJed Brown   ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr);
338c4762a1bSJed Brown   ierr = PetscFECreateDefault(comm, dim, dim, user->simplex, "vel_", PETSC_DEFAULT, &fe[0]);CHKERRQ(ierr);
339c4762a1bSJed Brown   ierr = PetscObjectSetName((PetscObject) fe[0], "velocity");CHKERRQ(ierr);
340c4762a1bSJed Brown   ierr = PetscFECreateDefault(comm, dim, 1, user->simplex, "pres_", PETSC_DEFAULT, &fe[1]);CHKERRQ(ierr);
341c4762a1bSJed Brown   ierr = PetscFECopyQuadrature(fe[0], fe[1]);CHKERRQ(ierr);
342c4762a1bSJed Brown   ierr = PetscObjectSetName((PetscObject) fe[1], "pressure");CHKERRQ(ierr);
343c4762a1bSJed Brown   /* Set discretization and boundary conditions for each mesh */
344c4762a1bSJed Brown   ierr = DMSetField(dm, 0, NULL, (PetscObject) fe[0]);CHKERRQ(ierr);
345c4762a1bSJed Brown   ierr = DMSetField(dm, 1, NULL, (PetscObject) fe[1]);CHKERRQ(ierr);
346c4762a1bSJed Brown   ierr = DMCreateDS(dm);CHKERRQ(ierr);
347c4762a1bSJed Brown   ierr = SetupProblem(dm, user);CHKERRQ(ierr);
348c4762a1bSJed Brown   ierr = PetscBagGetData(user->bag, (void **) &param);CHKERRQ(ierr);
349c4762a1bSJed Brown   while (cdm) {
350c4762a1bSJed Brown     ierr = DMCopyDisc(dm, cdm);CHKERRQ(ierr);
351c4762a1bSJed Brown     ierr = DMPlexCreateBasisRotation(cdm, param->alpha, 0.0, 0.0);CHKERRQ(ierr);
352c4762a1bSJed Brown     ierr = DMGetCoarseDM(cdm, &cdm);CHKERRQ(ierr);
353c4762a1bSJed Brown   }
354c4762a1bSJed Brown   ierr = PetscFEDestroy(&fe[0]);CHKERRQ(ierr);
355c4762a1bSJed Brown   ierr = PetscFEDestroy(&fe[1]);CHKERRQ(ierr);
356c4762a1bSJed Brown   PetscFunctionReturn(0);
357c4762a1bSJed Brown }
358c4762a1bSJed Brown 
359c4762a1bSJed Brown int main(int argc, char **argv)
360c4762a1bSJed Brown {
361c4762a1bSJed Brown   SNES           snes; /* nonlinear solver */
362c4762a1bSJed Brown   DM             dm;   /* problem definition */
363c4762a1bSJed Brown   Vec            u, r; /* solution and residual */
364c4762a1bSJed Brown   AppCtx         user; /* user-defined work context */
365c4762a1bSJed Brown   PetscErrorCode ierr;
366c4762a1bSJed Brown 
367c4762a1bSJed Brown   ierr = PetscInitialize(&argc, &argv, NULL,help);if (ierr) return ierr;
368c4762a1bSJed Brown   ierr = ProcessOptions(PETSC_COMM_WORLD, &user);CHKERRQ(ierr);
369c4762a1bSJed Brown   ierr = PetscBagCreate(PETSC_COMM_WORLD, sizeof(Parameter), &user.bag);CHKERRQ(ierr);
370c4762a1bSJed Brown   ierr = SetupParameters(&user);CHKERRQ(ierr);
371c4762a1bSJed Brown   ierr = SNESCreate(PETSC_COMM_WORLD, &snes);CHKERRQ(ierr);
372c4762a1bSJed Brown   ierr = CreateMesh(PETSC_COMM_WORLD, &user, &dm);CHKERRQ(ierr);
373c4762a1bSJed Brown   ierr = SNESSetDM(snes, dm);CHKERRQ(ierr);
374c4762a1bSJed Brown   ierr = DMSetApplicationContext(dm, &user);CHKERRQ(ierr);
375c4762a1bSJed Brown   /* Setup problem */
376c4762a1bSJed Brown   ierr = PetscMalloc(2 * sizeof(void (*)(const PetscReal[], PetscScalar *, void *)), &user.exactFuncs);CHKERRQ(ierr);
377c4762a1bSJed Brown   ierr = SetupDiscretization(dm, &user);CHKERRQ(ierr);
378c4762a1bSJed Brown   ierr = DMPlexCreateClosureIndex(dm, NULL);CHKERRQ(ierr);
379c4762a1bSJed Brown 
380c4762a1bSJed Brown   ierr = DMCreateGlobalVector(dm, &u);CHKERRQ(ierr);
381c4762a1bSJed Brown   ierr = VecDuplicate(u, &r);CHKERRQ(ierr);
382c4762a1bSJed Brown 
383c4762a1bSJed Brown   ierr = DMPlexSetSNESLocalFEM(dm,&user,&user,&user);CHKERRQ(ierr);
384c4762a1bSJed Brown 
385c4762a1bSJed Brown   ierr = SNESSetFromOptions(snes);CHKERRQ(ierr);
386c4762a1bSJed Brown 
387c4762a1bSJed Brown   {
388c4762a1bSJed Brown     Parameter *param;
389c4762a1bSJed Brown     void      *ctxs[2];
390c4762a1bSJed Brown 
391c4762a1bSJed Brown     ierr = PetscBagGetData(user.bag, (void **) &param);CHKERRQ(ierr);
392c4762a1bSJed Brown     ctxs[0] = ctxs[1] = param;
393c4762a1bSJed Brown     ierr = DMProjectFunction(dm, 0.0, user.exactFuncs, ctxs, INSERT_ALL_VALUES, u);CHKERRQ(ierr);
394c4762a1bSJed Brown     ierr = PetscObjectSetName((PetscObject) u, "Exact Solution");CHKERRQ(ierr);
395c4762a1bSJed Brown     ierr = VecViewFromOptions(u, NULL, "-exact_vec_view");CHKERRQ(ierr);
396c4762a1bSJed Brown   }
397*348a1646SMatthew G. Knepley   ierr = DMSNESCheckFromOptions(snes, u);CHKERRQ(ierr);
398c4762a1bSJed Brown   ierr = VecSet(u, 0.0);CHKERRQ(ierr);
399c4762a1bSJed Brown   ierr = PetscObjectSetName((PetscObject) u, "Solution");CHKERRQ(ierr);
400c4762a1bSJed Brown   ierr = SNESSolve(snes, NULL, u);CHKERRQ(ierr);
401c4762a1bSJed Brown   ierr = VecViewFromOptions(u, NULL, "-sol_vec_view");CHKERRQ(ierr);
402c4762a1bSJed Brown 
403c4762a1bSJed Brown   ierr = VecDestroy(&u);CHKERRQ(ierr);
404c4762a1bSJed Brown   ierr = VecDestroy(&r);CHKERRQ(ierr);
405c4762a1bSJed Brown   ierr = PetscFree(user.exactFuncs);CHKERRQ(ierr);
406c4762a1bSJed Brown   ierr = DMDestroy(&dm);CHKERRQ(ierr);
407c4762a1bSJed Brown   ierr = SNESDestroy(&snes);CHKERRQ(ierr);
408c4762a1bSJed Brown   ierr = PetscBagDestroy(&user.bag);CHKERRQ(ierr);
409c4762a1bSJed Brown   ierr = PetscFinalize();
410c4762a1bSJed Brown   return ierr;
411c4762a1bSJed Brown }
412c4762a1bSJed Brown 
413c4762a1bSJed Brown /*TEST
414c4762a1bSJed Brown 
415c4762a1bSJed Brown   # Convergence
416c4762a1bSJed Brown   test:
417c4762a1bSJed Brown     suffix: 2d_quad_q1_p0_conv
418c4762a1bSJed Brown     requires: !single
419c4762a1bSJed Brown     args: -simplex 0 -dm_plex_separate_marker -dm_refine 1 \
420c4762a1bSJed Brown       -vel_petscspace_degree 1 -pres_petscspace_degree 0 \
421c4762a1bSJed Brown       -snes_convergence_estimate -convest_num_refine 2 -snes_error_if_not_converged \
422c4762a1bSJed Brown       -ksp_type fgmres -ksp_gmres_restart 10 -ksp_rtol 1.0e-9 -ksp_error_if_not_converged \
423c4762a1bSJed Brown       -pc_type fieldsplit -pc_fieldsplit_type schur -pc_fieldsplit_schur_factorization_type full \
424c4762a1bSJed Brown         -fieldsplit_velocity_pc_type lu \
425c4762a1bSJed Brown         -fieldsplit_pressure_ksp_rtol 1e-10 -fieldsplit_pressure_pc_type jacobi
426c4762a1bSJed Brown   test:
427c4762a1bSJed Brown     suffix: 2d_quad_q1_p0_conv_u0
428c4762a1bSJed Brown     requires: !single
429c4762a1bSJed Brown     args: -simplex 0 -dm_plex_separate_marker -dm_refine 1 -u_0 0.125 \
430c4762a1bSJed Brown       -vel_petscspace_degree 1 -pres_petscspace_degree 0 \
431c4762a1bSJed Brown       -snes_convergence_estimate -convest_num_refine 2 -snes_error_if_not_converged \
432c4762a1bSJed Brown       -ksp_type fgmres -ksp_gmres_restart 10 -ksp_rtol 1.0e-9 -ksp_error_if_not_converged \
433c4762a1bSJed Brown       -pc_type fieldsplit -pc_fieldsplit_type schur -pc_fieldsplit_schur_factorization_type full \
434c4762a1bSJed Brown         -fieldsplit_velocity_pc_type lu \
435c4762a1bSJed Brown         -fieldsplit_pressure_ksp_rtol 1e-10 -fieldsplit_pressure_pc_type jacobi
436c4762a1bSJed Brown   test:
437c4762a1bSJed Brown     suffix: 2d_quad_q1_p0_conv_u0_alpha
438c4762a1bSJed Brown     requires: !single
439c4762a1bSJed Brown     args: -simplex 0 -dm_plex_separate_marker -dm_refine 1 -u_0 0.125 -alpha 0.3927 \
440c4762a1bSJed Brown       -vel_petscspace_degree 1 -pres_petscspace_degree 0 \
441c4762a1bSJed Brown       -snes_convergence_estimate -convest_num_refine 2 -snes_error_if_not_converged \
442c4762a1bSJed Brown       -ksp_type fgmres -ksp_gmres_restart 10 -ksp_rtol 1.0e-9 -ksp_error_if_not_converged \
443c4762a1bSJed Brown       -pc_type fieldsplit -pc_fieldsplit_type schur -pc_fieldsplit_schur_factorization_type full \
444c4762a1bSJed Brown         -fieldsplit_velocity_pc_type lu \
445c4762a1bSJed Brown         -fieldsplit_pressure_ksp_rtol 1e-10 -fieldsplit_pressure_pc_type jacobi
446c4762a1bSJed Brown   test:
447c4762a1bSJed Brown     suffix: 2d_quad_q1_p0_conv_gmg_vanka
448c4762a1bSJed Brown     requires: !single long_runtime
449c4762a1bSJed Brown     args: -simplex 0 -dm_plex_separate_marker -cells 2,2 -dm_refine_hierarchy 1 \
450c4762a1bSJed Brown       -vel_petscspace_degree 1 -pres_petscspace_degree 0 \
451c4762a1bSJed Brown       -snes_convergence_estimate -convest_num_refine 1 -snes_error_if_not_converged \
452c4762a1bSJed Brown       -ksp_type fgmres -ksp_gmres_restart 10 -ksp_rtol 1.0e-9 -ksp_error_if_not_converged \
453c4762a1bSJed Brown       -pc_type fieldsplit -pc_fieldsplit_type schur -pc_fieldsplit_schur_factorization_type full \
454c4762a1bSJed Brown         -fieldsplit_velocity_pc_type mg \
455c4762a1bSJed Brown           -fieldsplit_velocity_mg_levels_pc_type patch -fieldsplit_velocity_mg_levels_pc_patch_exclude_subspaces 1 \
456c4762a1bSJed Brown           -fieldsplit_velocity_mg_levels_pc_patch_construct_codim 0 -fieldsplit_velocity_mg_levels_pc_patch_construct_type vanka \
457c4762a1bSJed Brown         -fieldsplit_pressure_ksp_rtol 1e-5 -fieldsplit_pressure_pc_type jacobi
458c4762a1bSJed Brown   test:
459c4762a1bSJed Brown     suffix: 2d_tri_p2_p1_conv
460c4762a1bSJed Brown     requires: triangle !single
461c4762a1bSJed Brown     args: -dm_plex_separate_marker -dm_refine 1 \
462c4762a1bSJed Brown       -vel_petscspace_degree 2 -pres_petscspace_degree 1 \
463c4762a1bSJed Brown       -dmsnes_check .001 -snes_error_if_not_converged \
464c4762a1bSJed Brown       -ksp_type fgmres -ksp_gmres_restart 10 -ksp_rtol 1.0e-9 -ksp_error_if_not_converged \
465c4762a1bSJed Brown       -pc_type fieldsplit -pc_fieldsplit_type schur -pc_fieldsplit_schur_factorization_type full \
466c4762a1bSJed Brown         -fieldsplit_velocity_pc_type lu \
467c4762a1bSJed Brown         -fieldsplit_pressure_ksp_rtol 1e-10 -fieldsplit_pressure_pc_type jacobi
468c4762a1bSJed Brown   test:
469c4762a1bSJed Brown     suffix: 2d_tri_p2_p1_conv_u0_alpha
470c4762a1bSJed Brown     requires: triangle !single
471c4762a1bSJed Brown     args: -dm_plex_separate_marker -dm_refine 0 -u_0 0.125 -alpha 0.3927 \
472c4762a1bSJed Brown       -vel_petscspace_degree 2 -pres_petscspace_degree 1 \
473c4762a1bSJed Brown       -dmsnes_check .001 -snes_error_if_not_converged \
474c4762a1bSJed Brown       -ksp_type fgmres -ksp_gmres_restart 10 -ksp_rtol 1.0e-9 -ksp_error_if_not_converged \
475c4762a1bSJed Brown       -pc_type fieldsplit -pc_fieldsplit_type schur -pc_fieldsplit_schur_factorization_type full \
476c4762a1bSJed Brown         -fieldsplit_velocity_pc_type lu \
477c4762a1bSJed Brown         -fieldsplit_pressure_ksp_rtol 1e-10 -fieldsplit_pressure_pc_type jacobi
478c4762a1bSJed Brown   test:
479c4762a1bSJed Brown     suffix: 2d_tri_p2_p1_conv_gmg_vcycle
480c4762a1bSJed Brown     requires: triangle !single
481c4762a1bSJed Brown     args: -dm_plex_separate_marker -cells 2,2 -dm_refine_hierarchy 1 \
482c4762a1bSJed Brown       -vel_petscspace_degree 2 -pres_petscspace_degree 1 \
483c4762a1bSJed Brown       -dmsnes_check .001 -snes_error_if_not_converged \
484c4762a1bSJed Brown       -ksp_type fgmres -ksp_gmres_restart 10 -ksp_rtol 1.0e-9 -ksp_error_if_not_converged \
485c4762a1bSJed Brown       -pc_type fieldsplit -pc_fieldsplit_type schur -pc_fieldsplit_schur_factorization_type full \
486c4762a1bSJed Brown         -fieldsplit_velocity_pc_type mg \
487c4762a1bSJed Brown         -fieldsplit_pressure_ksp_rtol 1e-10 -fieldsplit_pressure_pc_type jacobi
488c4762a1bSJed Brown TEST*/
489