1c4762a1bSJed Brown static char help[] = "Poiseuille Flow in 2d and 3d channels with finite elements.\n\ 2c4762a1bSJed Brown We solve the Poiseuille flow problem in a rectangular\n\ 3c4762a1bSJed Brown domain, using a parallel unstructured mesh (DMPLEX) to discretize it.\n\n\n"; 4c4762a1bSJed Brown 5c4762a1bSJed Brown /*F 6c4762a1bSJed Brown A Poiseuille flow is a steady-state isoviscous Stokes flow in a pipe of constant cross-section. We discretize using the 7c4762a1bSJed Brown finite element method on an unstructured mesh. The weak form equations are 8c4762a1bSJed Brown \begin{align*} 9c4762a1bSJed Brown < \nabla v, \nu (\nabla u + {\nabla u}^T) > - < \nabla\cdot v, p > + < v, \Delta \hat n >_{\Gamma_o} = 0 10c4762a1bSJed Brown < q, \nabla\cdot u > = 0 11c4762a1bSJed Brown \end{align*} 12c4762a1bSJed Brown where $\nu$ is the kinematic viscosity, $\Delta$ is the pressure drop per unit length, assuming that pressure is 0 on 13c4762a1bSJed Brown the left edge, and $\Gamma_o$ is the outlet boundary at the right edge of the pipe. The normal velocity will be zero at 14c4762a1bSJed Brown the wall, but we will allow a fixed tangential velocity $u_0$. 15c4762a1bSJed Brown 16c4762a1bSJed Brown In order to test our global to local basis transformation, we will allow the pipe to be at an angle $\alpha$ to the 17c4762a1bSJed Brown coordinate axes. 18c4762a1bSJed Brown 19c4762a1bSJed Brown For visualization, use 20c4762a1bSJed Brown 21c4762a1bSJed Brown -dm_view hdf5:$PWD/sol.h5 -sol_vec_view hdf5:$PWD/sol.h5::append -exact_vec_view hdf5:$PWD/sol.h5::append 22c4762a1bSJed Brown F*/ 23c4762a1bSJed Brown 24c4762a1bSJed Brown #include <petscdmplex.h> 25c4762a1bSJed Brown #include <petscsnes.h> 26c4762a1bSJed Brown #include <petscds.h> 27c4762a1bSJed Brown #include <petscbag.h> 28c4762a1bSJed Brown 29c4762a1bSJed Brown typedef struct { 30c4762a1bSJed Brown PetscReal Delta; /* Pressure drop per unit length */ 31c4762a1bSJed Brown PetscReal nu; /* Kinematic viscosity */ 32c4762a1bSJed Brown PetscReal u_0; /* Tangential velocity at the wall */ 33c4762a1bSJed Brown PetscReal alpha; /* Angle of pipe wall to x-axis */ 34c4762a1bSJed Brown } Parameter; 35c4762a1bSJed Brown 36c4762a1bSJed Brown typedef struct { 37c4762a1bSJed Brown PetscBag bag; /* Holds problem parameters */ 38c4762a1bSJed Brown } AppCtx; 39c4762a1bSJed Brown 40c4762a1bSJed Brown /* 41c4762a1bSJed Brown In 2D, plane Poiseuille flow has exact solution: 42c4762a1bSJed Brown 43c4762a1bSJed Brown u = \Delta/(2 \nu) y (1 - y) + u_0 44c4762a1bSJed Brown v = 0 45c4762a1bSJed Brown p = -\Delta x 46c4762a1bSJed Brown f = 0 47c4762a1bSJed Brown 48c4762a1bSJed Brown so that 49c4762a1bSJed Brown 50c4762a1bSJed Brown -\nu \Delta u + \nabla p + f = <\Delta, 0> + <-\Delta, 0> + <0, 0> = 0 51c4762a1bSJed Brown \nabla \cdot u = 0 + 0 = 0 52c4762a1bSJed Brown 53c4762a1bSJed Brown In 3D we use exact solution: 54c4762a1bSJed Brown 55c4762a1bSJed Brown u = \Delta/(4 \nu) (y (1 - y) + z (1 - z)) + u_0 56c4762a1bSJed Brown v = 0 57c4762a1bSJed Brown w = 0 58c4762a1bSJed Brown p = -\Delta x 59c4762a1bSJed Brown f = 0 60c4762a1bSJed Brown 61c4762a1bSJed Brown so that 62c4762a1bSJed Brown 63c4762a1bSJed Brown -\nu \Delta u + \nabla p + f = <Delta, 0, 0> + <-Delta, 0, 0> + <0, 0, 0> = 0 64c4762a1bSJed Brown \nabla \cdot u = 0 + 0 + 0 = 0 65c4762a1bSJed Brown 66c4762a1bSJed Brown Note that these functions use coordinates X in the global (rotated) frame 67c4762a1bSJed Brown */ 68c4762a1bSJed Brown PetscErrorCode quadratic_u(PetscInt dim, PetscReal time, const PetscReal X[], PetscInt Nf, PetscScalar *u, void *ctx) 69c4762a1bSJed Brown { 70c4762a1bSJed Brown Parameter *param = (Parameter *) ctx; 71c4762a1bSJed Brown PetscReal Delta = param->Delta; 72c4762a1bSJed Brown PetscReal nu = param->nu; 73c4762a1bSJed Brown PetscReal u_0 = param->u_0; 74c4762a1bSJed Brown PetscReal fac = (PetscReal) (dim - 1); 75c4762a1bSJed Brown PetscInt d; 76c4762a1bSJed Brown 77c4762a1bSJed Brown u[0] = u_0; 78c4762a1bSJed Brown for (d = 1; d < dim; ++d) u[0] += Delta/(fac * 2.0*nu) * X[d] * (1.0 - X[d]); 79c4762a1bSJed Brown for (d = 1; d < dim; ++d) u[d] = 0.0; 80c4762a1bSJed Brown return 0; 81c4762a1bSJed Brown } 82c4762a1bSJed Brown 83c4762a1bSJed Brown PetscErrorCode linear_p(PetscInt dim, PetscReal time, const PetscReal X[], PetscInt Nf, PetscScalar *p, void *ctx) 84c4762a1bSJed Brown { 85c4762a1bSJed Brown Parameter *param = (Parameter *) ctx; 86c4762a1bSJed Brown PetscReal Delta = param->Delta; 87c4762a1bSJed Brown 88c4762a1bSJed Brown p[0] = -Delta * X[0]; 89c4762a1bSJed Brown return 0; 90c4762a1bSJed Brown } 91c4762a1bSJed Brown 92c4762a1bSJed Brown PetscErrorCode wall_velocity(PetscInt dim, PetscReal time, const PetscReal X[], PetscInt Nf, PetscScalar *u, void *ctx) 93c4762a1bSJed Brown { 94c4762a1bSJed Brown Parameter *param = (Parameter *) ctx; 95c4762a1bSJed Brown PetscReal u_0 = param->u_0; 96c4762a1bSJed Brown PetscInt d; 97c4762a1bSJed Brown 98c4762a1bSJed Brown u[0] = u_0; 99c4762a1bSJed Brown for (d = 1; d < dim; ++d) u[d] = 0.0; 100c4762a1bSJed Brown return 0; 101c4762a1bSJed Brown } 102c4762a1bSJed Brown 103c4762a1bSJed Brown /* gradU[comp*dim+d] = {u_x, u_y, v_x, v_y} or {u_x, u_y, u_z, v_x, v_y, v_z, w_x, w_y, w_z} 104c4762a1bSJed Brown u[Ncomp] = {p} */ 105c4762a1bSJed Brown void f1_u(PetscInt dim, PetscInt Nf, PetscInt NfAux, 106c4762a1bSJed Brown const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 107c4762a1bSJed Brown const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 108c4762a1bSJed Brown PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f1[]) 109c4762a1bSJed Brown { 110c4762a1bSJed Brown const PetscReal nu = PetscRealPart(constants[1]); 111c4762a1bSJed Brown const PetscInt Nc = dim; 112c4762a1bSJed Brown PetscInt c, d; 113c4762a1bSJed Brown 114c4762a1bSJed Brown for (c = 0; c < Nc; ++c) { 115c4762a1bSJed Brown for (d = 0; d < dim; ++d) { 116c4762a1bSJed Brown /* f1[c*dim+d] = 0.5*nu*(u_x[c*dim+d] + u_x[d*dim+c]); */ 117c4762a1bSJed Brown f1[c*dim+d] = nu*u_x[c*dim+d]; 118c4762a1bSJed Brown } 119c4762a1bSJed Brown f1[c*dim+c] -= u[uOff[1]]; 120c4762a1bSJed Brown } 121c4762a1bSJed Brown } 122c4762a1bSJed Brown 123c4762a1bSJed Brown /* gradU[comp*dim+d] = {u_x, u_y, v_x, v_y} or {u_x, u_y, u_z, v_x, v_y, v_z, w_x, w_y, w_z} */ 124c4762a1bSJed Brown void f0_p(PetscInt dim, PetscInt Nf, PetscInt NfAux, 125c4762a1bSJed Brown const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 126c4762a1bSJed Brown const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 127c4762a1bSJed Brown PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[]) 128c4762a1bSJed Brown { 129c4762a1bSJed Brown PetscInt d; 130c4762a1bSJed Brown for (d = 0, f0[0] = 0.0; d < dim; ++d) f0[0] += u_x[d*dim+d]; 131c4762a1bSJed Brown } 132c4762a1bSJed Brown 133c4762a1bSJed Brown /* Residual functions are in reference coordinates */ 134c4762a1bSJed Brown static void f0_bd_u(PetscInt dim, PetscInt Nf, PetscInt NfAux, 135c4762a1bSJed Brown const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 136c4762a1bSJed Brown const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 137c4762a1bSJed Brown PetscReal t, const PetscReal x[], const PetscReal n[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[]) 138c4762a1bSJed Brown { 139c4762a1bSJed Brown const PetscReal Delta = PetscRealPart(constants[0]); 140c4762a1bSJed Brown PetscReal alpha = PetscRealPart(constants[3]); 141c4762a1bSJed Brown PetscReal X = PetscCosReal(alpha)*x[0] + PetscSinReal(alpha)*x[1]; 142c4762a1bSJed Brown PetscInt d; 143c4762a1bSJed Brown 144c4762a1bSJed Brown for (d = 0; d < dim; ++d) { 145c4762a1bSJed Brown f0[d] = -Delta * X * n[d]; 146c4762a1bSJed Brown } 147c4762a1bSJed Brown } 148c4762a1bSJed Brown 149c4762a1bSJed Brown /* < q, \nabla\cdot u > 150c4762a1bSJed Brown NcompI = 1, NcompJ = dim */ 151c4762a1bSJed Brown void g1_pu(PetscInt dim, PetscInt Nf, PetscInt NfAux, 152c4762a1bSJed Brown const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 153c4762a1bSJed Brown const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 154c4762a1bSJed Brown PetscReal t, PetscReal u_tShift, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar g1[]) 155c4762a1bSJed Brown { 156c4762a1bSJed Brown PetscInt d; 157c4762a1bSJed Brown for (d = 0; d < dim; ++d) g1[d*dim+d] = 1.0; /* \frac{\partial\phi^{u_d}}{\partial x_d} */ 158c4762a1bSJed Brown } 159c4762a1bSJed Brown 160c4762a1bSJed Brown /* -< \nabla\cdot v, p > 161c4762a1bSJed Brown NcompI = dim, NcompJ = 1 */ 162c4762a1bSJed Brown void g2_up(PetscInt dim, PetscInt Nf, PetscInt NfAux, 163c4762a1bSJed Brown const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 164c4762a1bSJed Brown const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 165c4762a1bSJed Brown PetscReal t, PetscReal u_tShift, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar g2[]) 166c4762a1bSJed Brown { 167c4762a1bSJed Brown PetscInt d; 168c4762a1bSJed Brown for (d = 0; d < dim; ++d) g2[d*dim+d] = -1.0; /* \frac{\partial\psi^{u_d}}{\partial x_d} */ 169c4762a1bSJed Brown } 170c4762a1bSJed Brown 171c4762a1bSJed Brown /* < \nabla v, \nabla u + {\nabla u}^T > 172c4762a1bSJed Brown This just gives \nabla u, give the perdiagonal for the transpose */ 173c4762a1bSJed Brown void g3_uu(PetscInt dim, PetscInt Nf, PetscInt NfAux, 174c4762a1bSJed Brown const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 175c4762a1bSJed Brown const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 176c4762a1bSJed Brown PetscReal t, PetscReal u_tShift, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar g3[]) 177c4762a1bSJed Brown { 178c4762a1bSJed Brown const PetscReal nu = PetscRealPart(constants[1]); 179c4762a1bSJed Brown const PetscInt Nc = dim; 180c4762a1bSJed Brown PetscInt c, d; 181c4762a1bSJed Brown 182c4762a1bSJed Brown for (c = 0; c < Nc; ++c) { 183c4762a1bSJed Brown for (d = 0; d < dim; ++d) { 184c4762a1bSJed Brown g3[((c*Nc+c)*dim+d)*dim+d] = nu; 185c4762a1bSJed Brown } 186c4762a1bSJed Brown } 187c4762a1bSJed Brown } 188c4762a1bSJed Brown 189c4762a1bSJed Brown static PetscErrorCode SetupParameters(AppCtx *user) 190c4762a1bSJed Brown { 191c4762a1bSJed Brown PetscBag bag; 192c4762a1bSJed Brown Parameter *p; 193c4762a1bSJed Brown 194c4762a1bSJed Brown PetscFunctionBeginUser; 195c4762a1bSJed Brown /* setup PETSc parameter bag */ 1965f80ce2aSJacob Faibussowitsch CHKERRQ(PetscBagGetData(user->bag, (void **) &p)); 1975f80ce2aSJacob Faibussowitsch CHKERRQ(PetscBagSetName(user->bag, "par", "Poiseuille flow parameters")); 198c4762a1bSJed Brown bag = user->bag; 1995f80ce2aSJacob Faibussowitsch CHKERRQ(PetscBagRegisterReal(bag, &p->Delta, 1.0, "Delta", "Pressure drop per unit length")); 2005f80ce2aSJacob Faibussowitsch CHKERRQ(PetscBagRegisterReal(bag, &p->nu, 1.0, "nu", "Kinematic viscosity")); 2015f80ce2aSJacob Faibussowitsch CHKERRQ(PetscBagRegisterReal(bag, &p->u_0, 0.0, "u_0", "Tangential velocity at the wall")); 2025f80ce2aSJacob Faibussowitsch CHKERRQ(PetscBagRegisterReal(bag, &p->alpha, 0.0, "alpha", "Angle of pipe wall to x-axis")); 203c4762a1bSJed Brown PetscFunctionReturn(0); 204c4762a1bSJed Brown } 205c4762a1bSJed Brown 206c4762a1bSJed Brown PetscErrorCode CreateMesh(MPI_Comm comm, AppCtx *user, DM *dm) 207c4762a1bSJed Brown { 208c4762a1bSJed Brown PetscFunctionBeginUser; 2095f80ce2aSJacob Faibussowitsch CHKERRQ(DMCreate(comm, dm)); 2105f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetType(*dm, DMPLEX)); 2115f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetFromOptions(*dm)); 212c4762a1bSJed Brown { 213c4762a1bSJed Brown Parameter *param; 214c4762a1bSJed Brown Vec coordinates; 215c4762a1bSJed Brown PetscScalar *coords; 216c4762a1bSJed Brown PetscReal alpha; 217c4762a1bSJed Brown PetscInt cdim, N, bs, i; 218c4762a1bSJed Brown 2195f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetCoordinateDim(*dm, &cdim)); 2205f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetCoordinates(*dm, &coordinates)); 2215f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetLocalSize(coordinates, &N)); 2225f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetBlockSize(coordinates, &bs)); 2232c71b3e2SJacob Faibussowitsch PetscCheckFalse(bs != cdim,comm, PETSC_ERR_ARG_WRONG, "Invalid coordinate blocksize %D != embedding dimension %D", bs, cdim); 2245f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(coordinates, &coords)); 2255f80ce2aSJacob Faibussowitsch CHKERRQ(PetscBagGetData(user->bag, (void **) ¶m)); 226c4762a1bSJed Brown alpha = param->alpha; 227c4762a1bSJed Brown for (i = 0; i < N; i += cdim) { 228c4762a1bSJed Brown PetscScalar x = coords[i+0]; 229c4762a1bSJed Brown PetscScalar y = coords[i+1]; 230c4762a1bSJed Brown 231c4762a1bSJed Brown coords[i+0] = PetscCosReal(alpha)*x - PetscSinReal(alpha)*y; 232c4762a1bSJed Brown coords[i+1] = PetscSinReal(alpha)*x + PetscCosReal(alpha)*y; 233c4762a1bSJed Brown } 2345f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(coordinates, &coords)); 2355f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetCoordinates(*dm, coordinates)); 236c4762a1bSJed Brown } 2375f80ce2aSJacob Faibussowitsch CHKERRQ(DMViewFromOptions(*dm, NULL, "-dm_view")); 238c4762a1bSJed Brown PetscFunctionReturn(0); 239c4762a1bSJed Brown } 240c4762a1bSJed Brown 241c4762a1bSJed Brown PetscErrorCode SetupProblem(DM dm, AppCtx *user) 242c4762a1bSJed Brown { 24345480ffeSMatthew G. Knepley PetscDS ds; 24445480ffeSMatthew G. Knepley PetscWeakForm wf; 24545480ffeSMatthew G. Knepley DMLabel label; 246c4762a1bSJed Brown Parameter *ctx; 24745480ffeSMatthew G. Knepley PetscInt id, bd; 248c4762a1bSJed Brown 249c4762a1bSJed Brown PetscFunctionBeginUser; 2505f80ce2aSJacob Faibussowitsch CHKERRQ(PetscBagGetData(user->bag, (void **) &ctx)); 2515f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetDS(dm, &ds)); 2525f80ce2aSJacob Faibussowitsch CHKERRQ(PetscDSSetResidual(ds, 0, NULL, f1_u)); 2535f80ce2aSJacob Faibussowitsch CHKERRQ(PetscDSSetResidual(ds, 1, f0_p, NULL)); 2545f80ce2aSJacob Faibussowitsch CHKERRQ(PetscDSSetJacobian(ds, 0, 0, NULL, NULL, NULL, g3_uu)); 2555f80ce2aSJacob Faibussowitsch CHKERRQ(PetscDSSetJacobian(ds, 0, 1, NULL, NULL, g2_up, NULL)); 2565f80ce2aSJacob Faibussowitsch CHKERRQ(PetscDSSetJacobian(ds, 1, 0, NULL, g1_pu, NULL, NULL)); 25745480ffeSMatthew G. Knepley 25845480ffeSMatthew G. Knepley id = 2; 2595f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetLabel(dm, "marker", &label)); 2605f80ce2aSJacob Faibussowitsch CHKERRQ(DMAddBoundary(dm, DM_BC_NATURAL, "right wall", label, 1, &id, 0, 0, NULL, NULL, NULL, ctx, &bd)); 2615f80ce2aSJacob Faibussowitsch CHKERRQ(PetscDSGetBoundary(ds, bd, &wf, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL)); 2625f80ce2aSJacob Faibussowitsch CHKERRQ(PetscWeakFormSetIndexBdResidual(wf, label, id, 0, 0, 0, f0_bd_u, 0, NULL)); 263c4762a1bSJed Brown /* Setup constants */ 264c4762a1bSJed Brown { 265c4762a1bSJed Brown Parameter *param; 266c4762a1bSJed Brown PetscScalar constants[4]; 267c4762a1bSJed Brown 2685f80ce2aSJacob Faibussowitsch CHKERRQ(PetscBagGetData(user->bag, (void **) ¶m)); 269c4762a1bSJed Brown 270c4762a1bSJed Brown constants[0] = param->Delta; 271c4762a1bSJed Brown constants[1] = param->nu; 272c4762a1bSJed Brown constants[2] = param->u_0; 273c4762a1bSJed Brown constants[3] = param->alpha; 2745f80ce2aSJacob Faibussowitsch CHKERRQ(PetscDSSetConstants(ds, 4, constants)); 275c4762a1bSJed Brown } 276c4762a1bSJed Brown /* Setup Boundary Conditions */ 277c4762a1bSJed Brown id = 3; 2785f80ce2aSJacob Faibussowitsch CHKERRQ(DMAddBoundary(dm, DM_BC_ESSENTIAL, "top wall", label, 1, &id, 0, 0, NULL, (void (*)(void)) wall_velocity, NULL, ctx, NULL)); 279c4762a1bSJed Brown id = 1; 2805f80ce2aSJacob Faibussowitsch CHKERRQ(DMAddBoundary(dm, DM_BC_ESSENTIAL, "bottom wall", label, 1, &id, 0, 0, NULL, (void (*)(void)) wall_velocity, NULL, ctx, NULL)); 281c4762a1bSJed Brown /* Setup exact solution */ 2825f80ce2aSJacob Faibussowitsch CHKERRQ(PetscDSSetExactSolution(ds, 0, quadratic_u, ctx)); 2835f80ce2aSJacob Faibussowitsch CHKERRQ(PetscDSSetExactSolution(ds, 1, linear_p, ctx)); 284c4762a1bSJed Brown PetscFunctionReturn(0); 285c4762a1bSJed Brown } 286c4762a1bSJed Brown 287c4762a1bSJed Brown PetscErrorCode SetupDiscretization(DM dm, AppCtx *user) 288c4762a1bSJed Brown { 289c4762a1bSJed Brown DM cdm = dm; 290c4762a1bSJed Brown PetscFE fe[2]; 291c4762a1bSJed Brown Parameter *param; 29230602db0SMatthew G. Knepley PetscBool simplex; 29330602db0SMatthew G. Knepley PetscInt dim; 294c4762a1bSJed Brown MPI_Comm comm; 295c4762a1bSJed Brown 296c4762a1bSJed Brown PetscFunctionBeginUser; 2975f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetDimension(dm, &dim)); 2985f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexIsSimplex(dm, &simplex)); 2995f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectGetComm((PetscObject) dm, &comm)); 3005f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFECreateDefault(comm, dim, dim, simplex, "vel_", PETSC_DEFAULT, &fe[0])); 3015f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectSetName((PetscObject) fe[0], "velocity")); 3025f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFECreateDefault(comm, dim, 1, simplex, "pres_", PETSC_DEFAULT, &fe[1])); 3035f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFECopyQuadrature(fe[0], fe[1])); 3045f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectSetName((PetscObject) fe[1], "pressure")); 305c4762a1bSJed Brown /* Set discretization and boundary conditions for each mesh */ 3065f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetField(dm, 0, NULL, (PetscObject) fe[0])); 3075f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetField(dm, 1, NULL, (PetscObject) fe[1])); 3085f80ce2aSJacob Faibussowitsch CHKERRQ(DMCreateDS(dm)); 3095f80ce2aSJacob Faibussowitsch CHKERRQ(SetupProblem(dm, user)); 3105f80ce2aSJacob Faibussowitsch CHKERRQ(PetscBagGetData(user->bag, (void **) ¶m)); 311c4762a1bSJed Brown while (cdm) { 3125f80ce2aSJacob Faibussowitsch CHKERRQ(DMCopyDisc(dm, cdm)); 3135f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexCreateBasisRotation(cdm, param->alpha, 0.0, 0.0)); 3145f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetCoarseDM(cdm, &cdm)); 315c4762a1bSJed Brown } 3165f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFEDestroy(&fe[0])); 3175f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFEDestroy(&fe[1])); 318c4762a1bSJed Brown PetscFunctionReturn(0); 319c4762a1bSJed Brown } 320c4762a1bSJed Brown 321c4762a1bSJed Brown int main(int argc, char **argv) 322c4762a1bSJed Brown { 323c4762a1bSJed Brown SNES snes; /* nonlinear solver */ 324c4762a1bSJed Brown DM dm; /* problem definition */ 325c4762a1bSJed Brown Vec u, r; /* solution and residual */ 326c4762a1bSJed Brown AppCtx user; /* user-defined work context */ 327c4762a1bSJed Brown 328*b122ec5aSJacob Faibussowitsch CHKERRQ(PetscInitialize(&argc, &argv, NULL,help)); 3295f80ce2aSJacob Faibussowitsch CHKERRQ(PetscBagCreate(PETSC_COMM_WORLD, sizeof(Parameter), &user.bag)); 3305f80ce2aSJacob Faibussowitsch CHKERRQ(SetupParameters(&user)); 3315f80ce2aSJacob Faibussowitsch CHKERRQ(PetscBagSetFromOptions(user.bag)); 3325f80ce2aSJacob Faibussowitsch CHKERRQ(SNESCreate(PETSC_COMM_WORLD, &snes)); 3335f80ce2aSJacob Faibussowitsch CHKERRQ(CreateMesh(PETSC_COMM_WORLD, &user, &dm)); 3345f80ce2aSJacob Faibussowitsch CHKERRQ(SNESSetDM(snes, dm)); 3355f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetApplicationContext(dm, &user)); 336c4762a1bSJed Brown /* Setup problem */ 3375f80ce2aSJacob Faibussowitsch CHKERRQ(SetupDiscretization(dm, &user)); 3385f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexCreateClosureIndex(dm, NULL)); 339c4762a1bSJed Brown 3405f80ce2aSJacob Faibussowitsch CHKERRQ(DMCreateGlobalVector(dm, &u)); 3415f80ce2aSJacob Faibussowitsch CHKERRQ(VecDuplicate(u, &r)); 342c4762a1bSJed Brown 3435f80ce2aSJacob Faibussowitsch CHKERRQ(DMPlexSetSNESLocalFEM(dm,&user,&user,&user)); 344c4762a1bSJed Brown 3455f80ce2aSJacob Faibussowitsch CHKERRQ(SNESSetFromOptions(snes)); 346c4762a1bSJed Brown 347c4762a1bSJed Brown { 34830602db0SMatthew G. Knepley PetscDS ds; 34930602db0SMatthew G. Knepley PetscSimplePointFunc exactFuncs[2]; 350c4762a1bSJed Brown void *ctxs[2]; 351c4762a1bSJed Brown 3525f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetDS(dm, &ds)); 3535f80ce2aSJacob Faibussowitsch CHKERRQ(PetscDSGetExactSolution(ds, 0, &exactFuncs[0], &ctxs[0])); 3545f80ce2aSJacob Faibussowitsch CHKERRQ(PetscDSGetExactSolution(ds, 1, &exactFuncs[1], &ctxs[1])); 3555f80ce2aSJacob Faibussowitsch CHKERRQ(DMProjectFunction(dm, 0.0, exactFuncs, ctxs, INSERT_ALL_VALUES, u)); 3565f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectSetName((PetscObject) u, "Exact Solution")); 3575f80ce2aSJacob Faibussowitsch CHKERRQ(VecViewFromOptions(u, NULL, "-exact_vec_view")); 358c4762a1bSJed Brown } 3595f80ce2aSJacob Faibussowitsch CHKERRQ(DMSNESCheckFromOptions(snes, u)); 3605f80ce2aSJacob Faibussowitsch CHKERRQ(VecSet(u, 0.0)); 3615f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectSetName((PetscObject) u, "Solution")); 3625f80ce2aSJacob Faibussowitsch CHKERRQ(SNESSolve(snes, NULL, u)); 3635f80ce2aSJacob Faibussowitsch CHKERRQ(VecViewFromOptions(u, NULL, "-sol_vec_view")); 364c4762a1bSJed Brown 3655f80ce2aSJacob Faibussowitsch CHKERRQ(VecDestroy(&u)); 3665f80ce2aSJacob Faibussowitsch CHKERRQ(VecDestroy(&r)); 3675f80ce2aSJacob Faibussowitsch CHKERRQ(DMDestroy(&dm)); 3685f80ce2aSJacob Faibussowitsch CHKERRQ(SNESDestroy(&snes)); 3695f80ce2aSJacob Faibussowitsch CHKERRQ(PetscBagDestroy(&user.bag)); 370*b122ec5aSJacob Faibussowitsch CHKERRQ(PetscFinalize()); 371*b122ec5aSJacob Faibussowitsch return 0; 372c4762a1bSJed Brown } 373c4762a1bSJed Brown 374c4762a1bSJed Brown /*TEST 375c4762a1bSJed Brown 376c4762a1bSJed Brown # Convergence 377c4762a1bSJed Brown test: 378c4762a1bSJed Brown suffix: 2d_quad_q1_p0_conv 379c4762a1bSJed Brown requires: !single 38030602db0SMatthew G. Knepley args: -dm_plex_simplex 0 -dm_plex_separate_marker -dm_refine 1 \ 381c4762a1bSJed Brown -vel_petscspace_degree 1 -pres_petscspace_degree 0 \ 382c4762a1bSJed Brown -snes_convergence_estimate -convest_num_refine 2 -snes_error_if_not_converged \ 383c4762a1bSJed Brown -ksp_type fgmres -ksp_gmres_restart 10 -ksp_rtol 1.0e-9 -ksp_error_if_not_converged \ 384c4762a1bSJed Brown -pc_type fieldsplit -pc_fieldsplit_type schur -pc_fieldsplit_schur_factorization_type full \ 385c4762a1bSJed Brown -fieldsplit_velocity_pc_type lu \ 386c4762a1bSJed Brown -fieldsplit_pressure_ksp_rtol 1e-10 -fieldsplit_pressure_pc_type jacobi 387c4762a1bSJed Brown test: 388c4762a1bSJed Brown suffix: 2d_quad_q1_p0_conv_u0 389c4762a1bSJed Brown requires: !single 39030602db0SMatthew G. Knepley args: -dm_plex_simplex 0 -dm_plex_separate_marker -dm_refine 1 -u_0 0.125 \ 391c4762a1bSJed Brown -vel_petscspace_degree 1 -pres_petscspace_degree 0 \ 392c4762a1bSJed Brown -snes_convergence_estimate -convest_num_refine 2 -snes_error_if_not_converged \ 393c4762a1bSJed Brown -ksp_type fgmres -ksp_gmres_restart 10 -ksp_rtol 1.0e-9 -ksp_error_if_not_converged \ 394c4762a1bSJed Brown -pc_type fieldsplit -pc_fieldsplit_type schur -pc_fieldsplit_schur_factorization_type full \ 395c4762a1bSJed Brown -fieldsplit_velocity_pc_type lu \ 396c4762a1bSJed Brown -fieldsplit_pressure_ksp_rtol 1e-10 -fieldsplit_pressure_pc_type jacobi 397c4762a1bSJed Brown test: 398c4762a1bSJed Brown suffix: 2d_quad_q1_p0_conv_u0_alpha 399c4762a1bSJed Brown requires: !single 40030602db0SMatthew G. Knepley args: -dm_plex_simplex 0 -dm_plex_separate_marker -dm_refine 1 -u_0 0.125 -alpha 0.3927 \ 401c4762a1bSJed Brown -vel_petscspace_degree 1 -pres_petscspace_degree 0 \ 402c4762a1bSJed Brown -snes_convergence_estimate -convest_num_refine 2 -snes_error_if_not_converged \ 403c4762a1bSJed Brown -ksp_type fgmres -ksp_gmres_restart 10 -ksp_rtol 1.0e-9 -ksp_error_if_not_converged \ 404c4762a1bSJed Brown -pc_type fieldsplit -pc_fieldsplit_type schur -pc_fieldsplit_schur_factorization_type full \ 405c4762a1bSJed Brown -fieldsplit_velocity_pc_type lu \ 406c4762a1bSJed Brown -fieldsplit_pressure_ksp_rtol 1e-10 -fieldsplit_pressure_pc_type jacobi 407c4762a1bSJed Brown test: 408c4762a1bSJed Brown suffix: 2d_quad_q1_p0_conv_gmg_vanka 409c4762a1bSJed Brown requires: !single long_runtime 41030602db0SMatthew G. Knepley args: -dm_plex_simplex 0 -dm_plex_separate_marker -dm_plex_box_faces 2,2 -dm_refine_hierarchy 1 \ 411c4762a1bSJed Brown -vel_petscspace_degree 1 -pres_petscspace_degree 0 \ 412c4762a1bSJed Brown -snes_convergence_estimate -convest_num_refine 1 -snes_error_if_not_converged \ 413c4762a1bSJed Brown -ksp_type fgmres -ksp_gmres_restart 10 -ksp_rtol 1.0e-9 -ksp_error_if_not_converged \ 414c4762a1bSJed Brown -pc_type fieldsplit -pc_fieldsplit_type schur -pc_fieldsplit_schur_factorization_type full \ 415c4762a1bSJed Brown -fieldsplit_velocity_pc_type mg \ 416c4762a1bSJed Brown -fieldsplit_velocity_mg_levels_pc_type patch -fieldsplit_velocity_mg_levels_pc_patch_exclude_subspaces 1 \ 417c4762a1bSJed Brown -fieldsplit_velocity_mg_levels_pc_patch_construct_codim 0 -fieldsplit_velocity_mg_levels_pc_patch_construct_type vanka \ 418c4762a1bSJed Brown -fieldsplit_pressure_ksp_rtol 1e-5 -fieldsplit_pressure_pc_type jacobi 419c4762a1bSJed Brown test: 420c4762a1bSJed Brown suffix: 2d_tri_p2_p1_conv 421c4762a1bSJed Brown requires: triangle !single 422c4762a1bSJed Brown args: -dm_plex_separate_marker -dm_refine 1 \ 423c4762a1bSJed Brown -vel_petscspace_degree 2 -pres_petscspace_degree 1 \ 424c4762a1bSJed Brown -dmsnes_check .001 -snes_error_if_not_converged \ 425c4762a1bSJed Brown -ksp_type fgmres -ksp_gmres_restart 10 -ksp_rtol 1.0e-9 -ksp_error_if_not_converged \ 426c4762a1bSJed Brown -pc_type fieldsplit -pc_fieldsplit_type schur -pc_fieldsplit_schur_factorization_type full \ 427c4762a1bSJed Brown -fieldsplit_velocity_pc_type lu \ 428c4762a1bSJed Brown -fieldsplit_pressure_ksp_rtol 1e-10 -fieldsplit_pressure_pc_type jacobi 429c4762a1bSJed Brown test: 430c4762a1bSJed Brown suffix: 2d_tri_p2_p1_conv_u0_alpha 431c4762a1bSJed Brown requires: triangle !single 432c4762a1bSJed Brown args: -dm_plex_separate_marker -dm_refine 0 -u_0 0.125 -alpha 0.3927 \ 433c4762a1bSJed Brown -vel_petscspace_degree 2 -pres_petscspace_degree 1 \ 434c4762a1bSJed Brown -dmsnes_check .001 -snes_error_if_not_converged \ 435c4762a1bSJed Brown -ksp_type fgmres -ksp_gmres_restart 10 -ksp_rtol 1.0e-9 -ksp_error_if_not_converged \ 436c4762a1bSJed Brown -pc_type fieldsplit -pc_fieldsplit_type schur -pc_fieldsplit_schur_factorization_type full \ 437c4762a1bSJed Brown -fieldsplit_velocity_pc_type lu \ 438c4762a1bSJed Brown -fieldsplit_pressure_ksp_rtol 1e-10 -fieldsplit_pressure_pc_type jacobi 439c4762a1bSJed Brown test: 440c4762a1bSJed Brown suffix: 2d_tri_p2_p1_conv_gmg_vcycle 441c4762a1bSJed Brown requires: triangle !single 44230602db0SMatthew G. Knepley args: -dm_plex_separate_marker -dm_plex_box_faces 2,2 -dm_refine_hierarchy 1 \ 443c4762a1bSJed Brown -vel_petscspace_degree 2 -pres_petscspace_degree 1 \ 444c4762a1bSJed Brown -dmsnes_check .001 -snes_error_if_not_converged \ 445c4762a1bSJed Brown -ksp_type fgmres -ksp_gmres_restart 10 -ksp_rtol 1.0e-9 -ksp_error_if_not_converged \ 446c4762a1bSJed Brown -pc_type fieldsplit -pc_fieldsplit_type schur -pc_fieldsplit_schur_factorization_type full \ 447c4762a1bSJed Brown -fieldsplit_velocity_pc_type mg \ 448c4762a1bSJed Brown -fieldsplit_pressure_ksp_rtol 1e-10 -fieldsplit_pressure_pc_type jacobi 449c4762a1bSJed Brown TEST*/ 450