xref: /petsc/src/sys/classes/bag/bag.c (revision 4e8208cbcbc709572b8abe32f33c78b69c819375)
15f80ce2aSJacob Faibussowitsch #include <petsc/private/petscimpl.h>
2af0996ceSBarry Smith #include <petsc/private/bagimpl.h> /*I  "petscbag.h"   I*/
3665c2dedSJed Brown #include <petscviewer.h>
45c6c1daeSBarry Smith 
55c6c1daeSBarry Smith /*
65c6c1daeSBarry Smith       Adds item to the linked list in a bag
75c6c1daeSBarry Smith */
PetscBagRegister_Private(PetscBag bag,PetscBagItem item,const char * name,const char * help)8d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscBagRegister_Private(PetscBag bag, PetscBagItem item, const char *name, const char *help)
9d71ae5a4SJacob Faibussowitsch {
105c6c1daeSBarry Smith   PetscFunctionBegin;
119566063dSJacob Faibussowitsch   PetscCall(PetscStrncpy(item->name, name, PETSC_BAG_NAME_LENGTH - 1));
129566063dSJacob Faibussowitsch   PetscCall(PetscStrncpy(item->help, help, PETSC_BAG_HELP_LENGTH - 1));
135f80ce2aSJacob Faibussowitsch   if (bag->bagitems) {
145c6c1daeSBarry Smith     PetscBagItem nitem = bag->bagitems;
155f80ce2aSJacob Faibussowitsch 
165f80ce2aSJacob Faibussowitsch     while (nitem->next) nitem = nitem->next;
175c6c1daeSBarry Smith     nitem->next = item;
185f80ce2aSJacob Faibussowitsch   } else bag->bagitems = item;
195c6c1daeSBarry Smith   bag->count++;
203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
215c6c1daeSBarry Smith }
225c6c1daeSBarry Smith 
235c6c1daeSBarry Smith /*@C
24811af0c4SBarry Smith   PetscBagRegisterEnum - add an enum value to a `PetscBag`
255c6c1daeSBarry Smith 
26c3339decSBarry Smith   Logically Collective
275c6c1daeSBarry Smith 
28d8d19677SJose E. Roman   Input Parameters:
295c6c1daeSBarry Smith + bag      - the bag of values
30811af0c4SBarry Smith . addr     - location of enum in struct, for example `&params->dt`
315c6c1daeSBarry Smith . list     - array of strings containing names of enum values followed by enum name followed by enum prefix
32811af0c4SBarry Smith . mdefault - the initial value, cast with (`PetscEnum`)
332fe279fdSBarry Smith . name     - the name of the item
345c6c1daeSBarry Smith - help     - longer string with more information about the value
355c6c1daeSBarry Smith 
365c6c1daeSBarry Smith   Level: beginner
375c6c1daeSBarry Smith 
38db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()`
39db781477SPatrick Sanan           `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()`
40db781477SPatrick Sanan           `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`
415c6c1daeSBarry Smith @*/
PetscBagRegisterEnum(PetscBag bag,void * addr,const char * const * list,PetscEnum mdefault,const char * name,const char * help)42d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagRegisterEnum(PetscBag bag, void *addr, const char *const *list, PetscEnum mdefault, const char *name, const char *help)
43d71ae5a4SJacob Faibussowitsch {
445c6c1daeSBarry Smith   PetscBagItem item;
455c6c1daeSBarry Smith   char         nname[PETSC_BAG_NAME_LENGTH + 1];
465c6c1daeSBarry Smith   PetscBool    printhelp;
475c6c1daeSBarry Smith   PetscInt     i = 0;
485c6c1daeSBarry Smith 
495c6c1daeSBarry Smith   PetscFunctionBegin;
504f572ea9SToby Isaac   PetscAssertPointer(bag, 1);
514f572ea9SToby Isaac   PetscAssertPointer(addr, 2);
524f572ea9SToby Isaac   PetscAssertPointer(list, 3);
534f572ea9SToby Isaac   PetscAssertPointer(name, 5);
544f572ea9SToby Isaac   PetscAssertPointer(help, 6);
555c6c1daeSBarry Smith   nname[0] = '-';
565c6c1daeSBarry Smith   nname[1] = 0;
579566063dSJacob Faibussowitsch   PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH));
589566063dSJacob Faibussowitsch   PetscCall(PetscOptionsHasHelp(NULL, &printhelp));
595c6c1daeSBarry Smith   if (printhelp) {
60fbccb6d4SPierre Jolivet     while (list[i++]);
619566063dSJacob Faibussowitsch     PetscCall((*PetscHelpPrintf)(bag->bagcomm, "  -%s%s <%s>: (%s) %s (choose one of) ", bag->bagprefix ? bag->bagprefix : "", name, list[mdefault], list[i - 3], help));
629566063dSJacob Faibussowitsch     for (i = 0; list[i + 2]; i++) PetscCall((*PetscHelpPrintf)(bag->bagcomm, " %s", list[i]));
639566063dSJacob Faibussowitsch     PetscCall((*PetscHelpPrintf)(bag->bagcomm, "\n"));
645c6c1daeSBarry Smith   }
659566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetEnum(NULL, bag->bagprefix, nname, list, &mdefault, NULL));
665c6c1daeSBarry Smith 
679566063dSJacob Faibussowitsch   PetscCall(PetscNew(&item));
685c6c1daeSBarry Smith   item->dtype  = PETSC_ENUM;
696497c311SBarry Smith   item->offset = (PetscInt)(((size_t)addr) - ((size_t)bag));
705f80ce2aSJacob Faibussowitsch   PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help);
7102c9f0b5SLisandro Dalcin   item->next  = NULL;
725c6c1daeSBarry Smith   item->msize = 1;
73835f2295SStefano Zampini   PetscCall(PetscStrArrayallocpy(list, &item->list));
745c6c1daeSBarry Smith   *(PetscEnum *)addr = mdefault;
759566063dSJacob Faibussowitsch   PetscCall(PetscBagRegister_Private(bag, item, name, help));
763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
775c6c1daeSBarry Smith }
785c6c1daeSBarry Smith 
795c6c1daeSBarry Smith /*@C
8009cbc92aSBarry Smith   PetscBagRegisterIntArray - add a `PetscInt` array to a `PetscBag`
815c6c1daeSBarry Smith 
82c3339decSBarry Smith   Logically Collective
835c6c1daeSBarry Smith 
84d8d19677SJose E. Roman   Input Parameters:
855c6c1daeSBarry Smith + bag   - the bag of values
86811af0c4SBarry Smith . addr  - location of integer in struct, for example `&params->i`
875c6c1daeSBarry Smith . msize - number of entries in array
88811af0c4SBarry Smith . name  - name of the array
895c6c1daeSBarry Smith - help  - longer string with more information about the value
905c6c1daeSBarry Smith 
915c6c1daeSBarry Smith   Level: beginner
925c6c1daeSBarry Smith 
93db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()`
94db781477SPatrick Sanan           `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()`
95db781477SPatrick Sanan           `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()`
965c6c1daeSBarry Smith @*/
PetscBagRegisterIntArray(PetscBag bag,void * addr,PetscInt msize,const char * name,const char * help)97d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagRegisterIntArray(PetscBag bag, void *addr, PetscInt msize, const char *name, const char *help)
98d71ae5a4SJacob Faibussowitsch {
995c6c1daeSBarry Smith   PetscBagItem item;
1005c6c1daeSBarry Smith   char         nname[PETSC_BAG_NAME_LENGTH + 1];
1015c6c1daeSBarry Smith   PetscBool    printhelp;
1025c6c1daeSBarry Smith   PetscInt     i, tmp = msize;
1035c6c1daeSBarry Smith 
1045c6c1daeSBarry Smith   PetscFunctionBegin;
1054f572ea9SToby Isaac   PetscAssertPointer(bag, 1);
1064f572ea9SToby Isaac   PetscAssertPointer(addr, 2);
1074f572ea9SToby Isaac   PetscAssertPointer(name, 4);
1084f572ea9SToby Isaac   PetscAssertPointer(help, 5);
1095c6c1daeSBarry Smith   nname[0] = '-';
1105c6c1daeSBarry Smith   nname[1] = 0;
1119566063dSJacob Faibussowitsch   PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH));
1129566063dSJacob Faibussowitsch   PetscCall(PetscOptionsHasHelp(NULL, &printhelp));
1135c6c1daeSBarry Smith   if (printhelp) {
1149566063dSJacob Faibussowitsch     PetscCall((*PetscHelpPrintf)(bag->bagcomm, "  -%s%s <", bag->bagprefix ? bag->bagprefix : "", name));
11548a46eb9SPierre Jolivet     for (i = 0; i < msize; i++) PetscCall((*PetscHelpPrintf)(bag->bagcomm, "%" PetscInt_FMT " ", *((PetscInt *)addr) + i));
1169566063dSJacob Faibussowitsch     PetscCall((*PetscHelpPrintf)(bag->bagcomm, ">: %s \n", help));
1175c6c1daeSBarry Smith   }
1189566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetIntArray(NULL, bag->bagprefix, nname, (PetscInt *)addr, &tmp, NULL));
1195c6c1daeSBarry Smith 
1209566063dSJacob Faibussowitsch   PetscCall(PetscNew(&item));
1215c6c1daeSBarry Smith   item->dtype  = PETSC_INT;
1226497c311SBarry Smith   item->offset = (PetscInt)(((size_t)addr) - ((size_t)bag));
1235f80ce2aSJacob Faibussowitsch   PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help);
12402c9f0b5SLisandro Dalcin   item->next  = NULL;
1255c6c1daeSBarry Smith   item->msize = msize;
1269566063dSJacob Faibussowitsch   PetscCall(PetscBagRegister_Private(bag, item, name, help));
1273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1285c6c1daeSBarry Smith }
1295c6c1daeSBarry Smith 
1305c6c1daeSBarry Smith /*@C
13109cbc92aSBarry Smith   PetscBagRegisterRealArray - add a `PetscReal` array to a `PetscBag`
1325c6c1daeSBarry Smith 
133c3339decSBarry Smith   Logically Collective
1345c6c1daeSBarry Smith 
135d8d19677SJose E. Roman   Input Parameters:
1365c6c1daeSBarry Smith + bag   - the bag of values
137811af0c4SBarry Smith . addr  - location of real array in struct, for example `&params->d`
138811af0c4SBarry Smith . msize - number of entries in the array
139811af0c4SBarry Smith . name  - name of the array
1405c6c1daeSBarry Smith - help  - longer string with more information about the value
1415c6c1daeSBarry Smith 
1425c6c1daeSBarry Smith   Level: beginner
1435c6c1daeSBarry Smith 
144db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()`
145db781477SPatrick Sanan           `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()`
146db781477SPatrick Sanan           `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()`
1475c6c1daeSBarry Smith @*/
PetscBagRegisterRealArray(PetscBag bag,void * addr,PetscInt msize,const char * name,const char * help)148d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagRegisterRealArray(PetscBag bag, void *addr, PetscInt msize, const char *name, const char *help)
149d71ae5a4SJacob Faibussowitsch {
1505c6c1daeSBarry Smith   PetscBagItem item;
1515c6c1daeSBarry Smith   char         nname[PETSC_BAG_NAME_LENGTH + 1];
1525c6c1daeSBarry Smith   PetscBool    printhelp;
1535c6c1daeSBarry Smith   PetscInt     i, tmp = msize;
1545c6c1daeSBarry Smith 
1555c6c1daeSBarry Smith   PetscFunctionBegin;
1564f572ea9SToby Isaac   PetscAssertPointer(bag, 1);
1574f572ea9SToby Isaac   PetscAssertPointer(addr, 2);
1584f572ea9SToby Isaac   PetscAssertPointer(name, 4);
1594f572ea9SToby Isaac   PetscAssertPointer(help, 5);
1605c6c1daeSBarry Smith   nname[0] = '-';
1615c6c1daeSBarry Smith   nname[1] = 0;
1629566063dSJacob Faibussowitsch   PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH));
1639566063dSJacob Faibussowitsch   PetscCall(PetscOptionsHasHelp(NULL, &printhelp));
1645c6c1daeSBarry Smith   if (printhelp) {
1659566063dSJacob Faibussowitsch     PetscCall((*PetscHelpPrintf)(bag->bagcomm, "  -%s%s <", bag->bagprefix ? bag->bagprefix : "", name));
1666497c311SBarry Smith     for (i = 0; i < msize; i++) PetscCall((*PetscHelpPrintf)(bag->bagcomm, "%g ", (double)(*((PetscReal *)addr) + i)));
1679566063dSJacob Faibussowitsch     PetscCall((*PetscHelpPrintf)(bag->bagcomm, ">: %s \n", help));
1685c6c1daeSBarry Smith   }
1699566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetRealArray(NULL, bag->bagprefix, nname, (PetscReal *)addr, &tmp, NULL));
1705c6c1daeSBarry Smith 
1719566063dSJacob Faibussowitsch   PetscCall(PetscNew(&item));
1725c6c1daeSBarry Smith   item->dtype  = PETSC_REAL;
1736497c311SBarry Smith   item->offset = (PetscInt)(((size_t)addr) - ((size_t)bag));
1745f80ce2aSJacob Faibussowitsch   PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help);
17502c9f0b5SLisandro Dalcin   item->next  = NULL;
1765c6c1daeSBarry Smith   item->msize = msize;
1779566063dSJacob Faibussowitsch   PetscCall(PetscBagRegister_Private(bag, item, name, help));
1783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1795c6c1daeSBarry Smith }
1805c6c1daeSBarry Smith 
1815c6c1daeSBarry Smith /*@C
18209cbc92aSBarry Smith   PetscBagRegisterInt - add a `PetscInt` value to a `PetscBag`
1835c6c1daeSBarry Smith 
184c3339decSBarry Smith   Logically Collective
1855c6c1daeSBarry Smith 
186d8d19677SJose E. Roman   Input Parameters:
1875c6c1daeSBarry Smith + bag      - the bag of values
188811af0c4SBarry Smith . addr     - location of integer in struct, for example `&params->i`
1895c6c1daeSBarry Smith . mdefault - the initial value
1905c6c1daeSBarry Smith . name     - name of the integer
1915c6c1daeSBarry Smith - help     - longer string with more information about the value
1925c6c1daeSBarry Smith 
1935c6c1daeSBarry Smith   Level: beginner
1945c6c1daeSBarry Smith 
195db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()`
196db781477SPatrick Sanan           `PetscBagRegisterInt64()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()`
197db781477SPatrick Sanan           `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()`
1985c6c1daeSBarry Smith @*/
PetscBagRegisterInt(PetscBag bag,void * addr,PetscInt mdefault,const char * name,const char * help)199d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagRegisterInt(PetscBag bag, void *addr, PetscInt mdefault, const char *name, const char *help)
200d71ae5a4SJacob Faibussowitsch {
2015c6c1daeSBarry Smith   PetscBagItem item;
2025c6c1daeSBarry Smith   char         nname[PETSC_BAG_NAME_LENGTH + 1];
2035c6c1daeSBarry Smith   PetscBool    printhelp;
2045c6c1daeSBarry Smith 
2055c6c1daeSBarry Smith   PetscFunctionBegin;
2064f572ea9SToby Isaac   PetscAssertPointer(bag, 1);
2074f572ea9SToby Isaac   PetscAssertPointer(addr, 2);
2084f572ea9SToby Isaac   PetscAssertPointer(name, 4);
2094f572ea9SToby Isaac   PetscAssertPointer(help, 5);
2105c6c1daeSBarry Smith   nname[0] = '-';
2115c6c1daeSBarry Smith   nname[1] = 0;
2129566063dSJacob Faibussowitsch   PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH));
2139566063dSJacob Faibussowitsch   PetscCall(PetscOptionsHasHelp(NULL, &printhelp));
21448a46eb9SPierre Jolivet   if (printhelp) PetscCall((*PetscHelpPrintf)(bag->bagcomm, "  -%s%s <%" PetscInt_FMT ">: %s \n", bag->bagprefix ? bag->bagprefix : "", name, mdefault, help));
2159566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetInt(NULL, bag->bagprefix, nname, &mdefault, NULL));
2165c6c1daeSBarry Smith 
2179566063dSJacob Faibussowitsch   PetscCall(PetscNew(&item));
2185c6c1daeSBarry Smith   item->dtype  = PETSC_INT;
2196497c311SBarry Smith   item->offset = (PetscInt)(((size_t)addr) - ((size_t)bag));
2205f80ce2aSJacob Faibussowitsch   PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help);
22102c9f0b5SLisandro Dalcin   item->next        = NULL;
2225c6c1daeSBarry Smith   item->msize       = 1;
2235c6c1daeSBarry Smith   *(PetscInt *)addr = mdefault;
2249566063dSJacob Faibussowitsch   PetscCall(PetscBagRegister_Private(bag, item, name, help));
2253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2265c6c1daeSBarry Smith }
2275c6c1daeSBarry Smith 
2280d349d43SBarry Smith /*@C
229811af0c4SBarry Smith   PetscBagRegisterInt64 - add a `PetscInt64` value to a `PetscBag`
2300d349d43SBarry Smith 
231c3339decSBarry Smith   Logically Collective
2320d349d43SBarry Smith 
233d8d19677SJose E. Roman   Input Parameters:
2340d349d43SBarry Smith + bag      - the bag of values
235811af0c4SBarry Smith . addr     - location of integer in struct, for example `&params->i`
2360d349d43SBarry Smith . mdefault - the initial value
2370d349d43SBarry Smith . name     - name of the integer
2380d349d43SBarry Smith - help     - longer string with more information about the value
2390d349d43SBarry Smith 
2400d349d43SBarry Smith   Level: beginner
2410d349d43SBarry Smith 
242db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()`
243db781477SPatrick Sanan           `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()`
244db781477SPatrick Sanan           `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()`
2450d349d43SBarry Smith @*/
PetscBagRegisterInt64(PetscBag bag,void * addr,PetscInt64 mdefault,const char * name,const char * help)246d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagRegisterInt64(PetscBag bag, void *addr, PetscInt64 mdefault, const char *name, const char *help)
247d71ae5a4SJacob Faibussowitsch {
2480d349d43SBarry Smith   PetscBagItem item;
2490d349d43SBarry Smith   char         nname[PETSC_BAG_NAME_LENGTH + 1];
2500d349d43SBarry Smith   PetscBool    printhelp;
251835f2295SStefano Zampini   PetscInt     odefault;
2520d349d43SBarry Smith   PetscBool    flg;
2530d349d43SBarry Smith 
2540d349d43SBarry Smith   PetscFunctionBegin;
2550d349d43SBarry Smith   nname[0] = '-';
2560d349d43SBarry Smith   nname[1] = 0;
257835f2295SStefano Zampini 
258835f2295SStefano Zampini   PetscCall(PetscIntCast(mdefault, &odefault));
2599566063dSJacob Faibussowitsch   PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH));
2609566063dSJacob Faibussowitsch   PetscCall(PetscOptionsHasHelp(NULL, &printhelp));
26148a46eb9SPierre Jolivet   if (printhelp) PetscCall((*PetscHelpPrintf)(bag->bagcomm, "  -%s%s <%" PetscInt_FMT ">: %s \n", bag->bagprefix ? bag->bagprefix : "", name, odefault, help));
2629566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetInt(NULL, bag->bagprefix, nname, &odefault, &flg));
263835f2295SStefano Zampini   if (flg) mdefault = odefault;
2640d349d43SBarry Smith 
2659566063dSJacob Faibussowitsch   PetscCall(PetscNew(&item));
2660d349d43SBarry Smith   item->dtype  = PETSC_INT;
2676497c311SBarry Smith   item->offset = (PetscInt)(((size_t)addr) - ((size_t)bag));
2685f80ce2aSJacob Faibussowitsch   PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help);
26902c9f0b5SLisandro Dalcin   item->next          = NULL;
2700d349d43SBarry Smith   item->msize         = 1;
271bafee8b4SSatish Balay   *(PetscInt64 *)addr = mdefault;
2729566063dSJacob Faibussowitsch   PetscCall(PetscBagRegister_Private(bag, item, name, help));
2733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2740d349d43SBarry Smith }
2750d349d43SBarry Smith 
276dd66f111SBlaise Bourdin /*@C
277811af0c4SBarry Smith   PetscBagRegisterBoolArray - add a n `PetscBool` values to a `PetscBag`
278dd66f111SBlaise Bourdin 
279c3339decSBarry Smith   Logically Collective
280dd66f111SBlaise Bourdin 
281d8d19677SJose E. Roman   Input Parameters:
282dd66f111SBlaise Bourdin + bag   - the bag of values
283811af0c4SBarry Smith . addr  - location of boolean array in struct, for example `&params->b`
284dd66f111SBlaise Bourdin . msize - number of entries in array
285dd66f111SBlaise Bourdin . name  - name of the boolean array
286dd66f111SBlaise Bourdin - help  - longer string with more information about the value
287dd66f111SBlaise Bourdin 
288dd66f111SBlaise Bourdin   Level: beginner
289dd66f111SBlaise Bourdin 
290db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()`
291db781477SPatrick Sanan           `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()`
292db781477SPatrick Sanan           `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()`
293dd66f111SBlaise Bourdin @*/
PetscBagRegisterBoolArray(PetscBag bag,void * addr,PetscInt msize,const char * name,const char * help)294d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagRegisterBoolArray(PetscBag bag, void *addr, PetscInt msize, const char *name, const char *help)
295d71ae5a4SJacob Faibussowitsch {
296dd66f111SBlaise Bourdin   PetscBagItem item;
297dd66f111SBlaise Bourdin   char         nname[PETSC_BAG_NAME_LENGTH + 1];
298dd66f111SBlaise Bourdin   PetscBool    printhelp;
299dd66f111SBlaise Bourdin   PetscInt     i, tmp = msize;
300dd66f111SBlaise Bourdin 
301dd66f111SBlaise Bourdin   PetscFunctionBegin;
3024f572ea9SToby Isaac   PetscAssertPointer(bag, 1);
3034f572ea9SToby Isaac   PetscAssertPointer(addr, 2);
3044f572ea9SToby Isaac   PetscAssertPointer(name, 4);
3054f572ea9SToby Isaac   PetscAssertPointer(help, 5);
306dd66f111SBlaise Bourdin   nname[0] = '-';
307dd66f111SBlaise Bourdin   nname[1] = 0;
3089566063dSJacob Faibussowitsch   PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH));
3099566063dSJacob Faibussowitsch   PetscCall(PetscOptionsHasHelp(NULL, &printhelp));
310dd66f111SBlaise Bourdin   if (printhelp) {
3119566063dSJacob Faibussowitsch     PetscCall((*PetscHelpPrintf)(bag->bagcomm, "  -%s%s <", bag->bagprefix ? bag->bagprefix : "", name));
31248a46eb9SPierre Jolivet     for (i = 0; i < msize; i++) PetscCall((*PetscHelpPrintf)(bag->bagcomm, "%" PetscInt_FMT " ", *((PetscInt *)addr) + i));
3139566063dSJacob Faibussowitsch     PetscCall((*PetscHelpPrintf)(bag->bagcomm, ">: %s \n", help));
314dd66f111SBlaise Bourdin   }
3159566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetBoolArray(NULL, bag->bagprefix, nname, (PetscBool *)addr, &tmp, NULL));
316dd66f111SBlaise Bourdin 
3179566063dSJacob Faibussowitsch   PetscCall(PetscNew(&item));
318dd66f111SBlaise Bourdin   item->dtype  = PETSC_BOOL;
3196497c311SBarry Smith   item->offset = (PetscInt)(((size_t)addr) - ((size_t)bag));
3205f80ce2aSJacob Faibussowitsch   PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help);
32102c9f0b5SLisandro Dalcin   item->next  = NULL;
322dd66f111SBlaise Bourdin   item->msize = msize;
3239566063dSJacob Faibussowitsch   PetscCall(PetscBagRegister_Private(bag, item, name, help));
3243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
325dd66f111SBlaise Bourdin }
326dd66f111SBlaise Bourdin 
3275c6c1daeSBarry Smith /*@C
328811af0c4SBarry Smith   PetscBagRegisterString - add a string value to a `PetscBag`
3295c6c1daeSBarry Smith 
330c3339decSBarry Smith   Logically Collective
3315c6c1daeSBarry Smith 
332d8d19677SJose E. Roman   Input Parameters:
3335c6c1daeSBarry Smith + bag      - the bag of values
334811af0c4SBarry Smith . addr     - location of start of string in struct, for example `&params->mystring`
3355c6c1daeSBarry Smith . msize    - length of the string space in the struct
3365c6c1daeSBarry Smith . mdefault - the initial value
3375c6c1daeSBarry Smith . name     - name of the string
3385c6c1daeSBarry Smith - help     - longer string with more information about the value
3395c6c1daeSBarry Smith 
3405c6c1daeSBarry Smith   Level: beginner
3415c6c1daeSBarry Smith 
34209cbc92aSBarry Smith   Note:
34309cbc92aSBarry Smith   The struct must have the field char mystring[`msize`]; not char *mystring
3445c6c1daeSBarry Smith 
345db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()`
346db781477SPatrick Sanan           `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()`
347c2e3fba1SPatrick Sanan           `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()`
3485c6c1daeSBarry Smith @*/
PetscBagRegisterString(PetscBag bag,void * addr,PetscInt msize,const char * mdefault,const char * name,const char * help)349ce78bad3SBarry Smith PetscErrorCode PetscBagRegisterString(PetscBag bag, void *addr, PetscInt msize, const char *mdefault, const char *name, const char *help) PeNS
350d71ae5a4SJacob Faibussowitsch {
3515c6c1daeSBarry Smith   PetscBagItem item;
3525c6c1daeSBarry Smith   char         nname[PETSC_BAG_NAME_LENGTH + 1];
3535c6c1daeSBarry Smith   PetscBool    printhelp;
3545c6c1daeSBarry Smith 
3555c6c1daeSBarry Smith   PetscFunctionBegin;
3564f572ea9SToby Isaac   PetscAssertPointer(bag, 1);
3574f572ea9SToby Isaac   PetscAssertPointer(addr, 2);
3584f572ea9SToby Isaac   PetscAssertPointer(mdefault, 4);
3594f572ea9SToby Isaac   PetscAssertPointer(name, 5);
3604f572ea9SToby Isaac   PetscAssertPointer(help, 6);
3615c6c1daeSBarry Smith   nname[0] = '-';
3625c6c1daeSBarry Smith   nname[1] = 0;
3639566063dSJacob Faibussowitsch   PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH));
3649566063dSJacob Faibussowitsch   PetscCall(PetscOptionsHasHelp(NULL, &printhelp));
36548a46eb9SPierre Jolivet   if (printhelp) PetscCall((*PetscHelpPrintf)(bag->bagcomm, "  -%s%s <%s>: %s \n", bag->bagprefix ? bag->bagprefix : "", name, mdefault, help));
3665c6c1daeSBarry Smith 
3679566063dSJacob Faibussowitsch   PetscCall(PetscNew(&item));
3685c6c1daeSBarry Smith   item->dtype  = PETSC_CHAR;
3696497c311SBarry Smith   item->offset = (PetscInt)(((size_t)addr) - ((size_t)bag));
3705f80ce2aSJacob Faibussowitsch   PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help);
37102c9f0b5SLisandro Dalcin   item->next  = NULL;
3725c6c1daeSBarry Smith   item->msize = msize;
37348a46eb9SPierre Jolivet   if (mdefault != (char *)addr) PetscCall(PetscStrncpy((char *)addr, mdefault, msize - 1));
3749566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetString(NULL, bag->bagprefix, nname, (char *)addr, msize, NULL));
3759566063dSJacob Faibussowitsch   PetscCall(PetscBagRegister_Private(bag, item, name, help));
3763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3775c6c1daeSBarry Smith }
3785c6c1daeSBarry Smith 
3795c6c1daeSBarry Smith /*@C
380811af0c4SBarry Smith   PetscBagRegisterReal - add a `PetscReal` value to a `PetscBag`
3815c6c1daeSBarry Smith 
382c3339decSBarry Smith   Logically Collective
3835c6c1daeSBarry Smith 
384d8d19677SJose E. Roman   Input Parameters:
3855c6c1daeSBarry Smith + bag      - the bag of values
38609cbc92aSBarry Smith . addr     - location of `PetscReal` in struct, for example `&params->r`
3875c6c1daeSBarry Smith . mdefault - the initial value
3885c6c1daeSBarry Smith . name     - name of the variable
3895c6c1daeSBarry Smith - help     - longer string with more information about the value
3905c6c1daeSBarry Smith 
3915c6c1daeSBarry Smith   Level: beginner
3925c6c1daeSBarry Smith 
393db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()`
394db781477SPatrick Sanan           `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()`
395db781477SPatrick Sanan           `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()`
3965c6c1daeSBarry Smith @*/
PetscBagRegisterReal(PetscBag bag,void * addr,PetscReal mdefault,const char * name,const char * help)397d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagRegisterReal(PetscBag bag, void *addr, PetscReal mdefault, const char *name, const char *help)
398d71ae5a4SJacob Faibussowitsch {
3995c6c1daeSBarry Smith   PetscBagItem item;
4005c6c1daeSBarry Smith   char         nname[PETSC_BAG_NAME_LENGTH + 1];
4015c6c1daeSBarry Smith   PetscBool    printhelp;
4025c6c1daeSBarry Smith 
4035c6c1daeSBarry Smith   PetscFunctionBegin;
4044f572ea9SToby Isaac   PetscAssertPointer(bag, 1);
4054f572ea9SToby Isaac   PetscAssertPointer(addr, 2);
4064f572ea9SToby Isaac   PetscAssertPointer(name, 4);
4074f572ea9SToby Isaac   PetscAssertPointer(help, 5);
4085c6c1daeSBarry Smith   nname[0] = '-';
4095c6c1daeSBarry Smith   nname[1] = 0;
4109566063dSJacob Faibussowitsch   PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH));
4119566063dSJacob Faibussowitsch   PetscCall(PetscOptionsHasHelp(NULL, &printhelp));
41248a46eb9SPierre Jolivet   if (printhelp) PetscCall((*PetscHelpPrintf)(bag->bagcomm, "  -%s%s <%g>: %s \n", bag->bagprefix ? bag->bagprefix : "", name, (double)mdefault, help));
4139566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetReal(NULL, bag->bagprefix, nname, &mdefault, NULL));
4145c6c1daeSBarry Smith 
4159566063dSJacob Faibussowitsch   PetscCall(PetscNew(&item));
4165c6c1daeSBarry Smith   item->dtype  = PETSC_REAL;
4176497c311SBarry Smith   item->offset = (PetscInt)(((size_t)addr) - ((size_t)bag));
4185f80ce2aSJacob Faibussowitsch   PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help);
41902c9f0b5SLisandro Dalcin   item->next         = NULL;
4205c6c1daeSBarry Smith   item->msize        = 1;
4215c6c1daeSBarry Smith   *(PetscReal *)addr = mdefault;
4229566063dSJacob Faibussowitsch   PetscCall(PetscBagRegister_Private(bag, item, name, help));
4233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4245c6c1daeSBarry Smith }
4255c6c1daeSBarry Smith 
4265c6c1daeSBarry Smith /*@C
427811af0c4SBarry Smith   PetscBagRegisterScalar - add a `PetscScalar` value to a `PetscBag`
4285c6c1daeSBarry Smith 
429c3339decSBarry Smith   Logically Collective
4305c6c1daeSBarry Smith 
431d8d19677SJose E. Roman   Input Parameters:
4325c6c1daeSBarry Smith + bag      - the bag of values
43309cbc92aSBarry Smith . addr     - location of `PetscScalar` in struct, for example `&params->c`
4345c6c1daeSBarry Smith . mdefault - the initial value
4355c6c1daeSBarry Smith . name     - name of the variable
4365c6c1daeSBarry Smith - help     - longer string with more information about the value
4375c6c1daeSBarry Smith 
4385c6c1daeSBarry Smith   Level: beginner
4395c6c1daeSBarry Smith 
440db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()`
44142747ad1SJacob Faibussowitsch           `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagSetFromOptions()`,
44242747ad1SJacob Faibussowitsch           `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()`
4435c6c1daeSBarry Smith @*/
PetscBagRegisterScalar(PetscBag bag,void * addr,PetscScalar mdefault,const char * name,const char * help)444d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagRegisterScalar(PetscBag bag, void *addr, PetscScalar mdefault, const char *name, const char *help)
445d71ae5a4SJacob Faibussowitsch {
4465c6c1daeSBarry Smith   PetscBagItem item;
4475c6c1daeSBarry Smith   char         nname[PETSC_BAG_NAME_LENGTH + 1];
4485c6c1daeSBarry Smith   PetscBool    printhelp;
4495c6c1daeSBarry Smith 
4505c6c1daeSBarry Smith   PetscFunctionBegin;
4514f572ea9SToby Isaac   PetscAssertPointer(bag, 1);
4524f572ea9SToby Isaac   PetscAssertPointer(addr, 2);
4534f572ea9SToby Isaac   PetscAssertPointer(name, 4);
4544f572ea9SToby Isaac   PetscAssertPointer(help, 5);
4555c6c1daeSBarry Smith   nname[0] = '-';
4565c6c1daeSBarry Smith   nname[1] = 0;
4579566063dSJacob Faibussowitsch   PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH));
4589566063dSJacob Faibussowitsch   PetscCall(PetscOptionsHasHelp(NULL, &printhelp));
45948a46eb9SPierre Jolivet   if (printhelp) PetscCall((*PetscHelpPrintf)(bag->bagcomm, "  -%s%s <%g + %gi>: %s \n", bag->bagprefix ? bag->bagprefix : "", name, (double)PetscRealPart(mdefault), (double)PetscImaginaryPart(mdefault), help));
4609566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetScalar(NULL, bag->bagprefix, nname, &mdefault, NULL));
4615c6c1daeSBarry Smith 
4629566063dSJacob Faibussowitsch   PetscCall(PetscNew(&item));
4635c6c1daeSBarry Smith   item->dtype  = PETSC_SCALAR;
4646497c311SBarry Smith   item->offset = (PetscInt)(((size_t)addr) - ((size_t)bag));
4655f80ce2aSJacob Faibussowitsch   PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help);
46602c9f0b5SLisandro Dalcin   item->next           = NULL;
4675c6c1daeSBarry Smith   item->msize          = 1;
4685c6c1daeSBarry Smith   *(PetscScalar *)addr = mdefault;
4699566063dSJacob Faibussowitsch   PetscCall(PetscBagRegister_Private(bag, item, name, help));
4703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4715c6c1daeSBarry Smith }
4725c6c1daeSBarry Smith 
4735c6c1daeSBarry Smith /*@C
474811af0c4SBarry Smith   PetscBagRegisterBool - add a `PetscBool` to a `PetscBag`
4755c6c1daeSBarry Smith 
476c3339decSBarry Smith   Logically Collective
4775c6c1daeSBarry Smith 
478d8d19677SJose E. Roman   Input Parameters:
4795c6c1daeSBarry Smith + bag      - the bag of values
48009cbc92aSBarry Smith . addr     - location of `PetscBool` in struct, for example `&params->b`
481811af0c4SBarry Smith . mdefault - the initial value, either `PETSC_FALSE` or `PETSC_TRUE`
4825c6c1daeSBarry Smith . name     - name of the variable
4835c6c1daeSBarry Smith - help     - longer string with more information about the value
4845c6c1daeSBarry Smith 
4855c6c1daeSBarry Smith   Level: beginner
4865c6c1daeSBarry Smith 
487db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()`
48842747ad1SJacob Faibussowitsch           `PetscBagRegisterInt()`, `PetscBagRegisterScalar()`
489db781477SPatrick Sanan           `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()`
4905c6c1daeSBarry Smith @*/
PetscBagRegisterBool(PetscBag bag,void * addr,PetscBool mdefault,const char * name,const char * help)491d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagRegisterBool(PetscBag bag, void *addr, PetscBool mdefault, const char *name, const char *help)
492d71ae5a4SJacob Faibussowitsch {
4935c6c1daeSBarry Smith   PetscBagItem item;
4945c6c1daeSBarry Smith   char         nname[PETSC_BAG_NAME_LENGTH + 1];
4955c6c1daeSBarry Smith   PetscBool    printhelp;
4965c6c1daeSBarry Smith 
4975c6c1daeSBarry Smith   PetscFunctionBegin;
4984f572ea9SToby Isaac   PetscAssertPointer(bag, 1);
4994f572ea9SToby Isaac   PetscAssertPointer(addr, 2);
5004f572ea9SToby Isaac   PetscAssertPointer(name, 4);
5014f572ea9SToby Isaac   PetscAssertPointer(help, 5);
5025c6c1daeSBarry Smith   nname[0] = '-';
5035c6c1daeSBarry Smith   nname[1] = 0;
5049566063dSJacob Faibussowitsch   PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH));
5059566063dSJacob Faibussowitsch   PetscCall(PetscOptionsHasHelp(NULL, &printhelp));
50648a46eb9SPierre Jolivet   if (printhelp) PetscCall((*PetscHelpPrintf)(bag->bagcomm, "  -%s%s <%s>: %s \n", bag->bagprefix ? bag->bagprefix : "", name, PetscBools[mdefault], help));
5079566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetBool(NULL, bag->bagprefix, nname, &mdefault, NULL));
5085c6c1daeSBarry Smith 
5099566063dSJacob Faibussowitsch   PetscCall(PetscNew(&item));
5105c6c1daeSBarry Smith   item->dtype  = PETSC_BOOL;
5116497c311SBarry Smith   item->offset = (PetscInt)(((size_t)addr) - ((size_t)bag));
5125f80ce2aSJacob Faibussowitsch   PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help);
51302c9f0b5SLisandro Dalcin   item->next         = NULL;
5145c6c1daeSBarry Smith   item->msize        = 1;
5155c6c1daeSBarry Smith   *(PetscBool *)addr = mdefault;
5169566063dSJacob Faibussowitsch   PetscCall(PetscBagRegister_Private(bag, item, name, help));
5173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5185c6c1daeSBarry Smith }
5195c6c1daeSBarry Smith 
5200764c050SBarry Smith /*@
521811af0c4SBarry Smith   PetscBagDestroy - Destroys a `PetscBag`
5225c6c1daeSBarry Smith 
523c3339decSBarry Smith   Collective
5245c6c1daeSBarry Smith 
5255c6c1daeSBarry Smith   Input Parameter:
5265c6c1daeSBarry Smith . bag - the bag of values
5275c6c1daeSBarry Smith 
5285c6c1daeSBarry Smith   Level: beginner
5295c6c1daeSBarry Smith 
530db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()`
531db781477SPatrick Sanan           `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()`
532db781477SPatrick Sanan           `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()`
5335c6c1daeSBarry Smith @*/
PetscBagDestroy(PetscBag * bag)534d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagDestroy(PetscBag *bag)
535d71ae5a4SJacob Faibussowitsch {
5365f80ce2aSJacob Faibussowitsch   PetscBagItem nitem;
5375c6c1daeSBarry Smith 
5385c6c1daeSBarry Smith   PetscFunctionBegin;
5393ba16761SJacob Faibussowitsch   if (!*bag) PetscFunctionReturn(PETSC_SUCCESS);
5404f572ea9SToby Isaac   PetscAssertPointer(*bag, 1);
5415f80ce2aSJacob Faibussowitsch   nitem = (*bag)->bagitems;
5425c6c1daeSBarry Smith   while (nitem) {
5435f80ce2aSJacob Faibussowitsch     PetscBagItem item = nitem->next;
5445f80ce2aSJacob Faibussowitsch 
5459566063dSJacob Faibussowitsch     if (nitem->list) PetscCall(PetscStrArrayDestroy(&nitem->list));
5469566063dSJacob Faibussowitsch     PetscCall(PetscFree(nitem));
5475c6c1daeSBarry Smith     nitem = item;
5485c6c1daeSBarry Smith   }
5499566063dSJacob Faibussowitsch   if ((*bag)->bagprefix) PetscCall(PetscFree((*bag)->bagprefix));
5509566063dSJacob Faibussowitsch   PetscCall(PetscFree(*bag));
5513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5525c6c1daeSBarry Smith }
5535c6c1daeSBarry Smith 
5545c6c1daeSBarry Smith /*@
555811af0c4SBarry Smith   PetscBagSetFromOptions - Allows setting entries to a `PetscBag` using the options database
5565c6c1daeSBarry Smith 
557c3339decSBarry Smith   Collective
5585c6c1daeSBarry Smith 
5595c6c1daeSBarry Smith   Input Parameter:
5605c6c1daeSBarry Smith . bag - the bag of values
5615c6c1daeSBarry Smith 
5625c6c1daeSBarry Smith   Level: beginner
5635c6c1daeSBarry Smith 
564811af0c4SBarry Smith   Note:
565811af0c4SBarry Smith   The options database keys for the entries are of the form `-[bagprefix]_name value`
566811af0c4SBarry Smith 
567db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagDestroy()`, `PetscBagLoad()`, `PetscBagGetData()`
568db781477SPatrick Sanan           `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()`
56942747ad1SJacob Faibussowitsch           `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagView()`, `PetscBagRegisterEnum()`
5705c6c1daeSBarry Smith @*/
PetscBagSetFromOptions(PetscBag bag)571d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagSetFromOptions(PetscBag bag)
572d71ae5a4SJacob Faibussowitsch {
5735c6c1daeSBarry Smith   PetscBagItem nitem = bag->bagitems;
5745c6c1daeSBarry Smith   char         name[PETSC_BAG_NAME_LENGTH + 1], helpname[PETSC_BAG_NAME_LENGTH + PETSC_BAG_HELP_LENGTH + 3];
5755c6c1daeSBarry Smith   PetscInt     n;
5765c6c1daeSBarry Smith 
5775c6c1daeSBarry Smith   PetscFunctionBegin;
5784f572ea9SToby Isaac   PetscAssertPointer(bag, 1);
5799566063dSJacob Faibussowitsch   PetscCall(PetscStrncpy(helpname, bag->bagname, sizeof(helpname)));
5809566063dSJacob Faibussowitsch   PetscCall(PetscStrlcat(helpname, " ", sizeof(helpname)));
5819566063dSJacob Faibussowitsch   PetscCall(PetscStrlcat(helpname, bag->baghelp, sizeof(helpname)));
582d0609cedSBarry Smith   PetscOptionsBegin(bag->bagcomm, bag->bagprefix, helpname, NULL);
5835c6c1daeSBarry Smith   while (nitem) {
5845c6c1daeSBarry Smith     name[0] = '-';
5855c6c1daeSBarry Smith     name[1] = 0;
5869566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(name, nitem->name, sizeof(name)));
5875c6c1daeSBarry Smith     if (nitem->dtype == PETSC_CHAR) { /* special handling for fortran required? [due to space padding vs null termination] */
588835f2295SStefano Zampini       char *value = ((char *)bag) + nitem->offset;
5899566063dSJacob Faibussowitsch       PetscCall(PetscOptionsString(name, nitem->help, "", value, value, nitem->msize, NULL));
5905c6c1daeSBarry Smith     } else if (nitem->dtype == PETSC_REAL) {
5915c6c1daeSBarry Smith       PetscReal *value = (PetscReal *)(((char *)bag) + nitem->offset);
5925c6c1daeSBarry Smith       if (nitem->msize == 1) {
5939566063dSJacob Faibussowitsch         PetscCall(PetscOptionsReal(name, nitem->help, "", *value, value, NULL));
5945c6c1daeSBarry Smith       } else {
5955c6c1daeSBarry Smith         n = nitem->msize;
5969566063dSJacob Faibussowitsch         PetscCall(PetscOptionsRealArray(name, nitem->help, "", value, &n, NULL));
5975c6c1daeSBarry Smith       }
5985c6c1daeSBarry Smith     } else if (nitem->dtype == PETSC_SCALAR) {
5995c6c1daeSBarry Smith       PetscScalar *value = (PetscScalar *)(((char *)bag) + nitem->offset);
6009566063dSJacob Faibussowitsch       PetscCall(PetscOptionsScalar(name, nitem->help, "", *value, value, NULL));
6015c6c1daeSBarry Smith     } else if (nitem->dtype == PETSC_INT) {
6025c6c1daeSBarry Smith       PetscInt *value = (PetscInt *)(((char *)bag) + nitem->offset);
6035c6c1daeSBarry Smith       if (nitem->msize == 1) {
6049566063dSJacob Faibussowitsch         PetscCall(PetscOptionsInt(name, nitem->help, "", *value, value, NULL));
6055c6c1daeSBarry Smith       } else {
6065c6c1daeSBarry Smith         n = nitem->msize;
6079566063dSJacob Faibussowitsch         PetscCall(PetscOptionsIntArray(name, nitem->help, "", value, &n, NULL));
6085c6c1daeSBarry Smith       }
6095c6c1daeSBarry Smith     } else if (nitem->dtype == PETSC_ENUM) {
6105c6c1daeSBarry Smith       PetscEnum *value = (PetscEnum *)(((char *)bag) + nitem->offset);
6115c6c1daeSBarry Smith       PetscInt   i     = 0;
612fbccb6d4SPierre Jolivet       while (nitem->list[i++]);
6139566063dSJacob Faibussowitsch       PetscCall(PetscOptionsEnum(name, nitem->help, nitem->list[i - 3], (const char *const *)nitem->list, *value, value, NULL));
6145c6c1daeSBarry Smith     } else if (nitem->dtype == PETSC_BOOL) {
6155c6c1daeSBarry Smith       PetscBool *value = (PetscBool *)(((char *)bag) + nitem->offset);
616dd66f111SBlaise Bourdin       if (nitem->msize == 1) {
6179566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool(name, nitem->help, "", *value, value, NULL));
618dd66f111SBlaise Bourdin       } else {
619dd66f111SBlaise Bourdin         n = nitem->msize;
6209566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBoolArray(name, nitem->help, "", value, &n, NULL));
621dd66f111SBlaise Bourdin       }
6225c6c1daeSBarry Smith     }
6235c6c1daeSBarry Smith     nitem = nitem->next;
6245c6c1daeSBarry Smith   }
625d0609cedSBarry Smith   PetscOptionsEnd();
6263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6275c6c1daeSBarry Smith }
6285c6c1daeSBarry Smith 
629ffeef943SBarry Smith /*@
6305c6c1daeSBarry Smith   PetscBagView - Views a bag of values as either ASCII text or a binary file
6315c6c1daeSBarry Smith 
632c3339decSBarry Smith   Collective
6335c6c1daeSBarry Smith 
634d8d19677SJose E. Roman   Input Parameters:
6355c6c1daeSBarry Smith + bag  - the bag of values
636aec76313SJacob Faibussowitsch - view - location to view the values
6375c6c1daeSBarry Smith 
6385c6c1daeSBarry Smith   Level: beginner
6395c6c1daeSBarry Smith 
640811af0c4SBarry Smith   Note:
641811af0c4SBarry Smith   Currently PETSc bags saved in a binary file can only be read back
64209cbc92aSBarry Smith   in on a machine with the same binary format.
6435c6c1daeSBarry Smith 
644db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagDestroy()`, `PetscBagLoad()`, `PetscBagGetData()`
645db781477SPatrick Sanan           `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()`, `PetscBagRegisterEnum()`
646db781477SPatrick Sanan           `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`
6475c6c1daeSBarry Smith @*/
PetscBagView(PetscBag bag,PetscViewer view)648d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagView(PetscBag bag, PetscViewer view)
649d71ae5a4SJacob Faibussowitsch {
6505c6c1daeSBarry Smith   PetscBool    isascii, isbinary;
6515c6c1daeSBarry Smith   PetscBagItem nitem = bag->bagitems;
6525c6c1daeSBarry Smith 
6535c6c1daeSBarry Smith   PetscFunctionBegin;
6544f572ea9SToby Isaac   PetscAssertPointer(bag, 1);
6555f80ce2aSJacob Faibussowitsch   PetscValidHeaderSpecific(view, PETSC_VIEWER_CLASSID, 2);
6569566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)view, PETSCVIEWERASCII, &isascii));
6579566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)view, PETSCVIEWERBINARY, &isbinary));
6585c6c1daeSBarry Smith   if (isascii) {
6593ffde785SBarry Smith     if (bag->bagprefix) {
6609566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(view, "PetscBag Object:  %s (%s) %s\n", bag->bagname, bag->bagprefix, bag->baghelp));
6613ffde785SBarry Smith     } else {
6629566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(view, "PetscBag Object:  %s %s\n", bag->bagname, bag->baghelp));
6633ffde785SBarry Smith     }
6645c6c1daeSBarry Smith     while (nitem) {
6655c6c1daeSBarry Smith       if (nitem->dtype == PETSC_CHAR) {
666835f2295SStefano Zampini         char *value             = ((char *)bag) + nitem->offset;
667da81f932SPierre Jolivet         char  tmp               = value[nitem->msize - 1]; /* special handling for fortran chars without null terminator */
6685c6c1daeSBarry Smith         value[nitem->msize - 1] = 0;
6699566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(view, "  %s = %s; %s\n", nitem->name, value, nitem->help));
6705c6c1daeSBarry Smith         value[nitem->msize - 1] = tmp;
6715c6c1daeSBarry Smith       } else if (nitem->dtype == PETSC_REAL) {
6725c6c1daeSBarry Smith         PetscReal *value = (PetscReal *)(((char *)bag) + nitem->offset);
6735c6c1daeSBarry Smith         PetscInt   i;
6749566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(view, "  %s = ", nitem->name));
67548a46eb9SPierre Jolivet         for (i = 0; i < nitem->msize; i++) PetscCall(PetscViewerASCIIPrintf(view, "%g ", (double)value[i]));
6769566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(view, "; %s\n", nitem->help));
6775c6c1daeSBarry Smith       } else if (nitem->dtype == PETSC_SCALAR) {
6785c6c1daeSBarry Smith         PetscScalar value = *(PetscScalar *)(((char *)bag) + nitem->offset);
6795c6c1daeSBarry Smith #if defined(PETSC_USE_COMPLEX)
6808627564fSBarry Smith         if ((double)PetscImaginaryPart(value)) {
6819566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(view, "  %s = %g + %gi; %s\n", nitem->name, (double)PetscRealPart(value), (double)PetscImaginaryPart(value), nitem->help));
6828627564fSBarry Smith         } else {
6839566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(view, "  %s = %g; %s\n", nitem->name, (double)PetscRealPart(value), nitem->help));
6848627564fSBarry Smith         }
6855c6c1daeSBarry Smith #else
6869566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(view, "  %s = %g; %s\n", nitem->name, (double)value, nitem->help));
6875c6c1daeSBarry Smith #endif
6885c6c1daeSBarry Smith       } else if (nitem->dtype == PETSC_INT) {
6895c6c1daeSBarry Smith         PetscInt i, *value = (PetscInt *)(((char *)bag) + nitem->offset);
6909566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(view, "  %s = ", nitem->name));
69148a46eb9SPierre Jolivet         for (i = 0; i < nitem->msize; i++) PetscCall(PetscViewerASCIIPrintf(view, "%" PetscInt_FMT " ", value[i]));
6929566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(view, "; %s\n", nitem->help));
6935c6c1daeSBarry Smith       } else if (nitem->dtype == PETSC_BOOL) {
694dd66f111SBlaise Bourdin         PetscBool *value = (PetscBool *)(((char *)bag) + nitem->offset);
695dd66f111SBlaise Bourdin         PetscInt   i;
6969566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(view, "  %s = ", nitem->name));
697dd66f111SBlaise Bourdin         for (i = 0; i < nitem->msize; i++) {
698ad49c6e3SMartin Diehl           /* stdbool.h defines true=1 and false=0, but non-conformant Fortran compilers define .true.=0xff (-1 if signed, 255 if unsigned).
699ad49c6e3SMartin Diehl              with the checks for either PETSC_FALSE or PETSC_TRUE we truly demand that the value be 0 or 1 */
700f4f49eeaSPierre Jolivet           PetscCheck(value[i] == PETSC_FALSE || value[i] == PETSC_TRUE, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Boolean value for %s %s is corrupt; integer value %" PetscInt_FMT, nitem->name, nitem->help, (PetscInt)value[i]);
7019566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIIPrintf(view, " %s", PetscBools[value[i]]));
702dd66f111SBlaise Bourdin         }
7039566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(view, "; %s\n", nitem->help));
7045c6c1daeSBarry Smith       } else if (nitem->dtype == PETSC_ENUM) {
7055c6c1daeSBarry Smith         PetscEnum value = *(PetscEnum *)(((char *)bag) + nitem->offset);
7065c6c1daeSBarry Smith         PetscInt  i     = 0;
707fbccb6d4SPierre Jolivet         while (nitem->list[i++]);
7089566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(view, "  %s = %s; (%s) %s\n", nitem->name, nitem->list[value], nitem->list[i - 3], nitem->help));
7095c6c1daeSBarry Smith       }
7105c6c1daeSBarry Smith       nitem = nitem->next;
7115c6c1daeSBarry Smith     }
7125c6c1daeSBarry Smith   } else if (isbinary) {
7135c6c1daeSBarry Smith     PetscInt          classid           = PETSC_BAG_FILE_CLASSID, dtype;
7145c6c1daeSBarry Smith     PetscInt          deprecatedbagsize = 0;
715a261c58fSBarry Smith     PetscViewerFormat format;
7169566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryWrite(view, &classid, 1, PETSC_INT));
7179566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryWrite(view, &deprecatedbagsize, 1, PETSC_INT));
7189566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryWrite(view, &bag->count, 1, PETSC_INT));
7199566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryWrite(view, bag->bagname, PETSC_BAG_NAME_LENGTH, PETSC_CHAR));
7209566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryWrite(view, bag->baghelp, PETSC_BAG_HELP_LENGTH, PETSC_CHAR));
7215c6c1daeSBarry Smith     while (nitem) {
7229566063dSJacob Faibussowitsch       PetscCall(PetscViewerBinaryWrite(view, &nitem->offset, 1, PETSC_INT));
7235c6c1daeSBarry Smith       dtype = (PetscInt)nitem->dtype;
7249566063dSJacob Faibussowitsch       PetscCall(PetscViewerBinaryWrite(view, &dtype, 1, PETSC_INT));
7259566063dSJacob Faibussowitsch       PetscCall(PetscViewerBinaryWrite(view, nitem->name, PETSC_BAG_NAME_LENGTH, PETSC_CHAR));
7269566063dSJacob Faibussowitsch       PetscCall(PetscViewerBinaryWrite(view, nitem->help, PETSC_BAG_HELP_LENGTH, PETSC_CHAR));
7279566063dSJacob Faibussowitsch       PetscCall(PetscViewerBinaryWrite(view, &nitem->msize, 1, PETSC_INT));
7285c6c1daeSBarry Smith 
72957508eceSPierre Jolivet       PetscCall(PetscViewerBinaryWrite(view, (char *)bag + nitem->offset, nitem->msize, nitem->dtype));
73048a46eb9SPierre Jolivet       if (dtype == PETSC_ENUM) PetscCall(PetscViewerBinaryWriteStringArray(view, (const char *const *)nitem->list));
7315c6c1daeSBarry Smith       nitem = nitem->next;
7325c6c1daeSBarry Smith     }
7339566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(view, &format));
734a261c58fSBarry Smith     if (format == PETSC_VIEWER_BINARY_MATLAB) {
735a261c58fSBarry Smith       MPI_Comm comm;
736a261c58fSBarry Smith       FILE    *info;
7379566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetComm((PetscObject)view, &comm));
7389566063dSJacob Faibussowitsch       PetscCall(PetscViewerBinaryGetInfoPointer(view, &info));
7399566063dSJacob Faibussowitsch       PetscCall(PetscFPrintf(comm, info, "#--- begin code written by PetscViewerBinary for MATLAB format ---#\n"));
7409566063dSJacob Faibussowitsch       PetscCall(PetscFPrintf(comm, info, "#$$ Set.%s = PetscBinaryRead(fd);\n", bag->bagname));
7419566063dSJacob Faibussowitsch       PetscCall(PetscFPrintf(comm, info, "#--- end code written by PetscViewerBinary for MATLAB format ---#\n\n"));
742a261c58fSBarry Smith     }
743a261c58fSBarry Smith   }
7443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7455c6c1daeSBarry Smith }
7465c6c1daeSBarry Smith 
747ffeef943SBarry Smith /*@
74809cbc92aSBarry Smith   PetscBagViewFromOptions - Processes command line options to determine if/how a `PetscBag` is to be viewed.
749173f9484SMatthew G. Knepley 
750c3339decSBarry Smith   Collective
751173f9484SMatthew G. Knepley 
752173f9484SMatthew G. Knepley   Input Parameters:
753aec76313SJacob Faibussowitsch + bag        - the object
75409cbc92aSBarry Smith . bobj       - optional other object that provides prefix (if `NULL` then the prefix in obj is used)
755173f9484SMatthew G. Knepley - optionname - option to activate viewing
756478db826SMatthew G. Knepley 
757173f9484SMatthew G. Knepley   Level: intermediate
758478db826SMatthew G. Knepley 
759db781477SPatrick Sanan .seealso: `PetscBagCreate()`, `PetscBag`, `PetscViewer`
760173f9484SMatthew G. Knepley @*/
PetscBagViewFromOptions(PetscBag bag,PetscObject bobj,const char optionname[])761d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagViewFromOptions(PetscBag bag, PetscObject bobj, const char optionname[])
762d71ae5a4SJacob Faibussowitsch {
763173f9484SMatthew G. Knepley   static PetscBool  incall = PETSC_FALSE;
764173f9484SMatthew G. Knepley   PetscViewer       viewer;
765173f9484SMatthew G. Knepley   PetscViewerFormat format;
766173f9484SMatthew G. Knepley   const char       *prefix, *bprefix = NULL;
767173f9484SMatthew G. Knepley   PetscBool         flg;
768173f9484SMatthew G. Knepley 
769173f9484SMatthew G. Knepley   PetscFunctionBegin;
7703ba16761SJacob Faibussowitsch   if (incall) PetscFunctionReturn(PETSC_SUCCESS);
771173f9484SMatthew G. Knepley   incall = PETSC_TRUE;
7724f572ea9SToby Isaac   PetscAssertPointer(bag, 1);
7739566063dSJacob Faibussowitsch   if (bobj) PetscCall(PetscObjectGetOptionsPrefix(bobj, &bprefix));
774173f9484SMatthew G. Knepley   prefix = bobj ? bprefix : bag->bagprefix;
775648c30bcSBarry Smith   PetscCall(PetscOptionsCreateViewer(bag->bagcomm, NULL, prefix, optionname, &viewer, &format, &flg));
776173f9484SMatthew G. Knepley   if (flg) {
7779566063dSJacob Faibussowitsch     PetscCall(PetscViewerPushFormat(viewer, format));
7789566063dSJacob Faibussowitsch     PetscCall(PetscBagView(bag, viewer));
7799566063dSJacob Faibussowitsch     PetscCall(PetscViewerFlush(viewer));
7809566063dSJacob Faibussowitsch     PetscCall(PetscViewerPopFormat(viewer));
781648c30bcSBarry Smith     PetscCall(PetscViewerDestroy(&viewer));
782173f9484SMatthew G. Knepley   }
783173f9484SMatthew G. Knepley   incall = PETSC_FALSE;
7843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
785173f9484SMatthew G. Knepley }
786173f9484SMatthew G. Knepley 
787ffeef943SBarry Smith /*@
7885c6c1daeSBarry Smith   PetscBagLoad - Loads a bag of values from a binary file
7895c6c1daeSBarry Smith 
790c3339decSBarry Smith   Collective
7915c6c1daeSBarry Smith 
792d8d19677SJose E. Roman   Input Parameters:
793aec76313SJacob Faibussowitsch + view - file to load values from
7945c6c1daeSBarry Smith - bag  - the bag of values
7955c6c1daeSBarry Smith 
7965c6c1daeSBarry Smith   Level: beginner
7975c6c1daeSBarry Smith 
79809cbc92aSBarry Smith   Note:
79909cbc92aSBarry Smith   You must have created and registered all the fields in the bag before loading into it. This only loads values.
80009cbc92aSBarry Smith 
801db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagDestroy()`, `PetscBagView()`, `PetscBagGetData()`
802db781477SPatrick Sanan           `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()`
803db781477SPatrick Sanan           `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()`
8045c6c1daeSBarry Smith @*/
PetscBagLoad(PetscViewer view,PetscBag bag)805d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagLoad(PetscViewer view, PetscBag bag)
806d71ae5a4SJacob Faibussowitsch {
8075c6c1daeSBarry Smith   PetscBool    isbinary;
8085f80ce2aSJacob Faibussowitsch   PetscInt     classid, bagcount, dtype, msize, offset, deprecatedbagsize;
8095c6c1daeSBarry Smith   char         name[PETSC_BAG_NAME_LENGTH], help[PETSC_BAG_HELP_LENGTH], **list;
8105c6c1daeSBarry Smith   PetscBagItem nitem;
8115c6c1daeSBarry Smith   MPI_Comm     comm;
8125c6c1daeSBarry Smith   PetscMPIInt  flag;
8135c6c1daeSBarry Smith 
8145c6c1daeSBarry Smith   PetscFunctionBegin;
8155f80ce2aSJacob Faibussowitsch   PetscValidHeaderSpecific(view, PETSC_VIEWER_CLASSID, 1);
8164f572ea9SToby Isaac   PetscAssertPointer(bag, 2);
8179566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)view, &comm));
8189566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_compare(comm, bag->bagcomm, &flag));
8195f80ce2aSJacob Faibussowitsch   PetscCheck(flag == MPI_CONGRUENT || flag == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "Different communicators in the viewer and bag");
8209566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)view, PETSCVIEWERBINARY, &isbinary));
8215f80ce2aSJacob Faibussowitsch   PetscCheck(isbinary, PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for this viewer type");
8225c6c1daeSBarry Smith 
8239566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(view, &classid, 1, NULL, PETSC_INT));
8245f80ce2aSJacob Faibussowitsch   PetscCheck(classid == PETSC_BAG_FILE_CLASSID, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Not PetscBag next in binary file");
8259566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(view, &deprecatedbagsize, 1, NULL, PETSC_INT));
8269566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(view, &bagcount, 1, NULL, PETSC_INT));
827835f2295SStefano Zampini   PetscCheck(bagcount == bag->count, comm, PETSC_ERR_ARG_INCOMP, "Bag in file has different number of entries %" PetscInt_FMT " then passed in bag %" PetscInt_FMT, bagcount, bag->count);
8289566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(view, bag->bagname, PETSC_BAG_NAME_LENGTH, NULL, PETSC_CHAR));
8299566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(view, bag->baghelp, PETSC_BAG_HELP_LENGTH, NULL, PETSC_CHAR));
8305c6c1daeSBarry Smith 
8315c6c1daeSBarry Smith   nitem = bag->bagitems;
8325f80ce2aSJacob Faibussowitsch   for (PetscInt i = 0; i < bagcount; i++) {
8339566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryRead(view, &offset, 1, NULL, PETSC_INT));
8345c6c1daeSBarry Smith     /* ignore the offset in the file */
8359566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryRead(view, &dtype, 1, NULL, PETSC_INT));
8369566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryRead(view, name, PETSC_BAG_NAME_LENGTH, NULL, PETSC_CHAR));
8379566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryRead(view, help, PETSC_BAG_HELP_LENGTH, NULL, PETSC_CHAR));
8389566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryRead(view, &msize, 1, NULL, PETSC_INT));
8395c6c1daeSBarry Smith 
8405c6c1daeSBarry Smith     if (dtype == (PetscInt)PETSC_CHAR) {
8419566063dSJacob Faibussowitsch       PetscCall(PetscViewerBinaryRead(view, ((char *)bag) + nitem->offset, msize, NULL, PETSC_CHAR));
8425c6c1daeSBarry Smith     } else if (dtype == (PetscInt)PETSC_REAL) {
8439566063dSJacob Faibussowitsch       PetscCall(PetscViewerBinaryRead(view, ((char *)bag) + nitem->offset, msize, NULL, PETSC_REAL));
8445c6c1daeSBarry Smith     } else if (dtype == (PetscInt)PETSC_SCALAR) {
8459566063dSJacob Faibussowitsch       PetscCall(PetscViewerBinaryRead(view, ((char *)bag) + nitem->offset, 1, NULL, PETSC_SCALAR));
8465c6c1daeSBarry Smith     } else if (dtype == (PetscInt)PETSC_INT) {
8479566063dSJacob Faibussowitsch       PetscCall(PetscViewerBinaryRead(view, ((char *)bag) + nitem->offset, msize, NULL, PETSC_INT));
8485c6c1daeSBarry Smith     } else if (dtype == (PetscInt)PETSC_BOOL) {
8499566063dSJacob Faibussowitsch       PetscCall(PetscViewerBinaryRead(view, ((char *)bag) + nitem->offset, msize, NULL, PETSC_BOOL));
8505c6c1daeSBarry Smith     } else if (dtype == (PetscInt)PETSC_ENUM) {
8519566063dSJacob Faibussowitsch       PetscCall(PetscViewerBinaryRead(view, ((char *)bag) + nitem->offset, 1, NULL, PETSC_ENUM));
8529566063dSJacob Faibussowitsch       PetscCall(PetscViewerBinaryReadStringArray(view, &list));
8535c6c1daeSBarry Smith       /* don't need to save list because it is already registered in the bag */
8549566063dSJacob Faibussowitsch       PetscCall(PetscFree(list));
8555c6c1daeSBarry Smith     }
8565c6c1daeSBarry Smith     nitem = nitem->next;
8575c6c1daeSBarry Smith   }
8583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8595c6c1daeSBarry Smith }
8605c6c1daeSBarry Smith 
861e8976759SBarry Smith /*@C
86209cbc92aSBarry Smith   PetscBagCreate - Create a bag of values. A `PetscBag` is a representation of a C struct that can be saved to and read from files,
86309cbc92aSBarry Smith   can have values set from the options database
8645c6c1daeSBarry Smith 
865d083f849SBarry Smith   Collective
8665c6c1daeSBarry Smith 
8675c6c1daeSBarry Smith   Input Parameters:
8685c6c1daeSBarry Smith + comm    - communicator to share bag
869ce78bad3SBarry Smith - bagsize - size of the C structure holding the values, for example `sizeof(mystruct)`
8705c6c1daeSBarry Smith 
8715c6c1daeSBarry Smith   Output Parameter:
8725c6c1daeSBarry Smith . bag - the bag of values
8735c6c1daeSBarry Smith 
874aec76313SJacob Faibussowitsch   Level: intermediate
87509cbc92aSBarry Smith 
8765c6c1daeSBarry Smith   Notes:
877811af0c4SBarry Smith   After creating the bag, for each entry in the C struct call the appropriate `PetscBagRegisterInt()` etc to define the C structs layout
878811af0c4SBarry Smith 
879377f809aSBarry Smith   The size of the struct must be small enough to fit in a `PetscInt`; by default
880811af0c4SBarry Smith   `PetscInt` is 4 bytes; this means a bag cannot be larger than 2 gigabytes in length.
881377f809aSBarry Smith   The warning about casting to a shorter length can be ignored below unless your struct is too large
8825c6c1daeSBarry Smith 
883db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagGetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()`
884db781477SPatrick Sanan           `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()`
88542747ad1SJacob Faibussowitsch           `PetscBagSetFromOptions()`, `PetscBagDestroy()`, `PetscBagRegisterEnum()`
8865c6c1daeSBarry Smith @*/
PetscBagCreate(MPI_Comm comm,size_t bagsize,PetscBag * bag)887d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagCreate(MPI_Comm comm, size_t bagsize, PetscBag *bag)
888d71ae5a4SJacob Faibussowitsch {
8895f80ce2aSJacob Faibussowitsch   const size_t totalsize = bagsize + sizeof(struct _n_PetscBag) + sizeof(PetscScalar);
8905c6c1daeSBarry Smith 
8915c6c1daeSBarry Smith   PetscFunctionBegin;
8924f572ea9SToby Isaac   PetscAssertPointer(bag, 3);
893377f809aSBarry Smith 
8949566063dSJacob Faibussowitsch   PetscCall(PetscInfo(NULL, "Creating Bag with total size %d\n", (int)totalsize));
8959566063dSJacob Faibussowitsch   PetscCall(PetscCalloc(totalsize, bag));
8966497c311SBarry Smith   PetscCall(PetscIntCast(totalsize, &(*bag)->bagsize));
8975c6c1daeSBarry Smith   (*bag)->bagcomm        = comm;
8980298fd71SBarry Smith   (*bag)->bagprefix      = NULL;
8995c6c1daeSBarry Smith   (*bag)->structlocation = (void *)(((char *)(*bag)) + sizeof(PetscScalar) * (sizeof(struct _n_PetscBag) / sizeof(PetscScalar)) + sizeof(PetscScalar));
9003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9015c6c1daeSBarry Smith }
9025c6c1daeSBarry Smith 
903cc4c1da9SBarry Smith /*@
9045c6c1daeSBarry Smith   PetscBagSetName - Sets the name of a bag of values
9055c6c1daeSBarry Smith 
9065c6c1daeSBarry Smith   Not Collective
9075c6c1daeSBarry Smith 
908aec76313SJacob Faibussowitsch   Level: intermediate
9095c6c1daeSBarry Smith 
9105c6c1daeSBarry Smith   Input Parameters:
9115c6c1daeSBarry Smith + bag  - the bag of values
9125c6c1daeSBarry Smith . name - the name assigned to the bag
9135c6c1daeSBarry Smith - help - help message for bag
9145c6c1daeSBarry Smith 
915db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagGetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()`
916db781477SPatrick Sanan           `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()`
917db781477SPatrick Sanan           `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagDestroy()`, `PetscBagRegisterEnum()`
9185c6c1daeSBarry Smith @*/
PetscBagSetName(PetscBag bag,const char name[],const char help[])919ce78bad3SBarry Smith PetscErrorCode PetscBagSetName(PetscBag bag, const char name[], const char help[])
920d71ae5a4SJacob Faibussowitsch {
9215c6c1daeSBarry Smith   PetscFunctionBegin;
9224f572ea9SToby Isaac   PetscAssertPointer(bag, 1);
9234f572ea9SToby Isaac   PetscAssertPointer(name, 2);
9244f572ea9SToby Isaac   PetscAssertPointer(help, 3);
9259566063dSJacob Faibussowitsch   PetscCall(PetscStrncpy(bag->bagname, name, PETSC_BAG_NAME_LENGTH - 1));
9269566063dSJacob Faibussowitsch   PetscCall(PetscStrncpy(bag->baghelp, help, PETSC_BAG_HELP_LENGTH - 1));
9273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9285c6c1daeSBarry Smith }
9295c6c1daeSBarry Smith 
9305c6c1daeSBarry Smith /*@C
9315c6c1daeSBarry Smith   PetscBagGetName - Gets the name of a bag of values
9325c6c1daeSBarry Smith 
9335c6c1daeSBarry Smith   Not Collective
9345c6c1daeSBarry Smith 
935aec76313SJacob Faibussowitsch   Level: intermediate
9365c6c1daeSBarry Smith 
9375c6c1daeSBarry Smith   Input Parameter:
9385c6c1daeSBarry Smith . bag - the bag of values
9395c6c1daeSBarry Smith 
9405c6c1daeSBarry Smith   Output Parameter:
9415c6c1daeSBarry Smith . name - the name assigned to the bag
9425c6c1daeSBarry Smith 
943db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()`
944db781477SPatrick Sanan           `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()`
945db781477SPatrick Sanan           `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagDestroy()`, `PetscBagRegisterEnum()`
9465c6c1daeSBarry Smith @*/
PetscBagGetName(PetscBag bag,const char ** name)947cc4c1da9SBarry Smith PetscErrorCode PetscBagGetName(PetscBag bag, const char **name)
948d71ae5a4SJacob Faibussowitsch {
9495c6c1daeSBarry Smith   PetscFunctionBegin;
9504f572ea9SToby Isaac   PetscAssertPointer(bag, 1);
9514f572ea9SToby Isaac   PetscAssertPointer(name, 2);
9525c6c1daeSBarry Smith   *name = bag->bagname;
9533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9545c6c1daeSBarry Smith }
9555c6c1daeSBarry Smith 
9565c6c1daeSBarry Smith /*@C
9575c6c1daeSBarry Smith   PetscBagGetData - Gives back the user - access to memory that
958811af0c4SBarry Smith   can be used for storing user-data-structure
9595c6c1daeSBarry Smith 
9605c6c1daeSBarry Smith   Not Collective
9615c6c1daeSBarry Smith 
9625c6c1daeSBarry Smith   Input Parameter:
9635c6c1daeSBarry Smith . bag - the bag of values
9645c6c1daeSBarry Smith 
9655c6c1daeSBarry Smith   Output Parameter:
96609cbc92aSBarry Smith . data - pointer to memory that will have user-data-structure, this can be cast to a pointer of the type the C struct used in
96709cbc92aSBarry Smith          defining the bag
96809cbc92aSBarry Smith 
969aec76313SJacob Faibussowitsch   Level: intermediate
9705c6c1daeSBarry Smith 
971db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`
972db781477SPatrick Sanan           `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()`
973db781477SPatrick Sanan           `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagDestroy()`, `PetscBagRegisterEnum()`
9745c6c1daeSBarry Smith @*/
PetscBagGetData(PetscBag bag,PetscCtxRt data)975*2a8381b2SBarry Smith PetscErrorCode PetscBagGetData(PetscBag bag, PetscCtxRt data)
976d71ae5a4SJacob Faibussowitsch {
9775c6c1daeSBarry Smith   PetscFunctionBegin;
9784f572ea9SToby Isaac   PetscAssertPointer(bag, 1);
9794f572ea9SToby Isaac   PetscAssertPointer(data, 2);
980ce78bad3SBarry Smith   *(void **)data = bag->structlocation;
9813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9825c6c1daeSBarry Smith }
9835c6c1daeSBarry Smith 
984cc4c1da9SBarry Smith /*@
9855c6c1daeSBarry Smith   PetscBagSetOptionsPrefix - Sets the prefix used for searching for all
986811af0c4SBarry Smith   `PetscBag` items in the options database.
9875c6c1daeSBarry Smith 
98809cbc92aSBarry Smith   Logically Collective
9895c6c1daeSBarry Smith 
990aec76313SJacob Faibussowitsch   Level: intermediate
9915c6c1daeSBarry Smith 
9925c6c1daeSBarry Smith   Input Parameters:
9935c6c1daeSBarry Smith + bag - the bag of values
994aec76313SJacob Faibussowitsch - pre - the prefix to prepend all Bag item names with.
9955c6c1daeSBarry Smith 
99609cbc92aSBarry Smith   Note:
99709cbc92aSBarry Smith   Must be called prior to registering any of the bag items.
9985c6c1daeSBarry Smith 
999db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()`
1000db781477SPatrick Sanan           `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagDestroy()`, `PetscBagRegisterEnum()`
10015c6c1daeSBarry Smith @*/
PetscBagSetOptionsPrefix(PetscBag bag,const char pre[])1002d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagSetOptionsPrefix(PetscBag bag, const char pre[])
1003d71ae5a4SJacob Faibussowitsch {
10045c6c1daeSBarry Smith   PetscFunctionBegin;
10054f572ea9SToby Isaac   PetscAssertPointer(bag, 1);
10065f80ce2aSJacob Faibussowitsch   if (pre) {
10074f572ea9SToby Isaac     PetscAssertPointer(pre, 2);
10085f80ce2aSJacob Faibussowitsch     PetscCheck(pre[0] != '-', PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Options prefix should not begin with a hyphen");
10099566063dSJacob Faibussowitsch     PetscCall(PetscFree(bag->bagprefix));
1010f4f49eeaSPierre Jolivet     PetscCall(PetscStrallocpy(pre, &bag->bagprefix));
10119566063dSJacob Faibussowitsch   } else PetscCall(PetscFree(bag->bagprefix));
10123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10135c6c1daeSBarry Smith }
1014ffb7e86cSMatthew G. Knepley 
1015ffb7e86cSMatthew G. Knepley /*@C
1016ffb7e86cSMatthew G. Knepley   PetscBagGetNames - Get the names of all entries in the bag
1017ffb7e86cSMatthew G. Knepley 
101809cbc92aSBarry Smith   Not Collective
1019ffb7e86cSMatthew G. Knepley 
10202fe279fdSBarry Smith   Input Parameter:
10212fe279fdSBarry Smith . bag - the bag of values
1022ffb7e86cSMatthew G. Knepley 
1023ffb7e86cSMatthew G. Knepley   Output Parameter:
102426a11704SBarry Smith . names - pass in an array of char pointers to hold the names. The array must be as long as the number of items in the bag.
1025ffb7e86cSMatthew G. Knepley 
1026ffb7e86cSMatthew G. Knepley   Level: intermediate
1027ffb7e86cSMatthew G. Knepley 
1028db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagGetName()`, `PetscBagSetName()`, `PetscBagCreate()`, `PetscBagGetData()`
1029db781477SPatrick Sanan           `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()`, `PetscBagRegisterEnum()`
1030ffb7e86cSMatthew G. Knepley @*/
PetscBagGetNames(PetscBag bag,const char * names[])1031d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagGetNames(PetscBag bag, const char *names[])
1032d71ae5a4SJacob Faibussowitsch {
1033ffb7e86cSMatthew G. Knepley   PetscBagItem nitem = bag->bagitems;
1034ffb7e86cSMatthew G. Knepley 
1035ffb7e86cSMatthew G. Knepley   PetscFunctionBegin;
10364f572ea9SToby Isaac   PetscAssertPointer(bag, 1);
10374f572ea9SToby Isaac   PetscAssertPointer(names, 2);
10385f80ce2aSJacob Faibussowitsch   for (PetscInt n = 0; nitem; ++n, nitem = nitem->next) names[n] = nitem->name;
10393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1040ffb7e86cSMatthew G. Knepley }
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