15f80ce2aSJacob Faibussowitsch #include <petsc/private/petscimpl.h> 2af0996ceSBarry Smith #include <petsc/private/bagimpl.h> /*I "petscbag.h" I*/ 3665c2dedSJed Brown #include <petscviewer.h> 45c6c1daeSBarry Smith 55c6c1daeSBarry Smith /* 65c6c1daeSBarry Smith Adds item to the linked list in a bag 75c6c1daeSBarry Smith */ 8d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscBagRegister_Private(PetscBag bag, PetscBagItem item, const char *name, const char *help) 9d71ae5a4SJacob Faibussowitsch { 105c6c1daeSBarry Smith PetscFunctionBegin; 119566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(item->name, name, PETSC_BAG_NAME_LENGTH - 1)); 129566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(item->help, help, PETSC_BAG_HELP_LENGTH - 1)); 135f80ce2aSJacob Faibussowitsch if (bag->bagitems) { 145c6c1daeSBarry Smith PetscBagItem nitem = bag->bagitems; 155f80ce2aSJacob Faibussowitsch 165f80ce2aSJacob Faibussowitsch while (nitem->next) nitem = nitem->next; 175c6c1daeSBarry Smith nitem->next = item; 185f80ce2aSJacob Faibussowitsch } else bag->bagitems = item; 195c6c1daeSBarry Smith bag->count++; 203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 215c6c1daeSBarry Smith } 225c6c1daeSBarry Smith 235c6c1daeSBarry Smith /*@C 24811af0c4SBarry Smith PetscBagRegisterEnum - add an enum value to a `PetscBag` 255c6c1daeSBarry Smith 26c3339decSBarry Smith Logically Collective 275c6c1daeSBarry Smith 28d8d19677SJose E. Roman Input Parameters: 295c6c1daeSBarry Smith + bag - the bag of values 30811af0c4SBarry Smith . addr - location of enum in struct, for example `¶ms->dt` 315c6c1daeSBarry Smith . list - array of strings containing names of enum values followed by enum name followed by enum prefix 32811af0c4SBarry Smith . mdefault - the initial value, cast with (`PetscEnum`) 332fe279fdSBarry Smith . name - the name of the item 345c6c1daeSBarry Smith - help - longer string with more information about the value 355c6c1daeSBarry Smith 365c6c1daeSBarry Smith Level: beginner 375c6c1daeSBarry Smith 38db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 39db781477SPatrick Sanan `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 40db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()` 415c6c1daeSBarry Smith @*/ 42d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagRegisterEnum(PetscBag bag, void *addr, const char *const *list, PetscEnum mdefault, const char *name, const char *help) 43d71ae5a4SJacob Faibussowitsch { 445c6c1daeSBarry Smith PetscBagItem item; 455c6c1daeSBarry Smith char nname[PETSC_BAG_NAME_LENGTH + 1]; 465c6c1daeSBarry Smith PetscBool printhelp; 475c6c1daeSBarry Smith PetscInt i = 0; 485c6c1daeSBarry Smith 495c6c1daeSBarry Smith PetscFunctionBegin; 504f572ea9SToby Isaac PetscAssertPointer(bag, 1); 514f572ea9SToby Isaac PetscAssertPointer(addr, 2); 524f572ea9SToby Isaac PetscAssertPointer(list, 3); 534f572ea9SToby Isaac PetscAssertPointer(name, 5); 544f572ea9SToby Isaac PetscAssertPointer(help, 6); 555c6c1daeSBarry Smith nname[0] = '-'; 565c6c1daeSBarry Smith nname[1] = 0; 579566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH)); 589566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasHelp(NULL, &printhelp)); 595c6c1daeSBarry Smith if (printhelp) { 609371c9d4SSatish Balay while (list[i++]) 619371c9d4SSatish Balay ; 629566063dSJacob Faibussowitsch PetscCall((*PetscHelpPrintf)(bag->bagcomm, " -%s%s <%s>: (%s) %s (choose one of) ", bag->bagprefix ? bag->bagprefix : "", name, list[mdefault], list[i - 3], help)); 639566063dSJacob Faibussowitsch for (i = 0; list[i + 2]; i++) PetscCall((*PetscHelpPrintf)(bag->bagcomm, " %s", list[i])); 649566063dSJacob Faibussowitsch PetscCall((*PetscHelpPrintf)(bag->bagcomm, "\n")); 655c6c1daeSBarry Smith } 669566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetEnum(NULL, bag->bagprefix, nname, list, &mdefault, NULL)); 675c6c1daeSBarry Smith 689566063dSJacob Faibussowitsch PetscCall(PetscNew(&item)); 695c6c1daeSBarry Smith item->dtype = PETSC_ENUM; 705c6c1daeSBarry Smith item->offset = ((char *)addr) - ((char *)bag); 715f80ce2aSJacob Faibussowitsch PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help); 7202c9f0b5SLisandro Dalcin item->next = NULL; 735c6c1daeSBarry Smith item->msize = 1; 749566063dSJacob Faibussowitsch PetscCall(PetscStrArrayallocpy(list, (char ***)&item->list)); 755c6c1daeSBarry Smith *(PetscEnum *)addr = mdefault; 769566063dSJacob Faibussowitsch PetscCall(PetscBagRegister_Private(bag, item, name, help)); 773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 785c6c1daeSBarry Smith } 795c6c1daeSBarry Smith 805c6c1daeSBarry Smith /*@C 8109cbc92aSBarry Smith PetscBagRegisterIntArray - add a `PetscInt` array to a `PetscBag` 825c6c1daeSBarry Smith 83c3339decSBarry Smith Logically Collective 845c6c1daeSBarry Smith 85d8d19677SJose E. Roman Input Parameters: 865c6c1daeSBarry Smith + bag - the bag of values 87811af0c4SBarry Smith . addr - location of integer in struct, for example `¶ms->i` 885c6c1daeSBarry Smith . msize - number of entries in array 89811af0c4SBarry Smith . name - name of the array 905c6c1daeSBarry Smith - help - longer string with more information about the value 915c6c1daeSBarry Smith 925c6c1daeSBarry Smith Level: beginner 935c6c1daeSBarry Smith 94db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 95db781477SPatrick Sanan `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 96db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()` 975c6c1daeSBarry Smith @*/ 98d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagRegisterIntArray(PetscBag bag, void *addr, PetscInt msize, const char *name, const char *help) 99d71ae5a4SJacob Faibussowitsch { 1005c6c1daeSBarry Smith PetscBagItem item; 1015c6c1daeSBarry Smith char nname[PETSC_BAG_NAME_LENGTH + 1]; 1025c6c1daeSBarry Smith PetscBool printhelp; 1035c6c1daeSBarry Smith PetscInt i, tmp = msize; 1045c6c1daeSBarry Smith 1055c6c1daeSBarry Smith PetscFunctionBegin; 1064f572ea9SToby Isaac PetscAssertPointer(bag, 1); 1074f572ea9SToby Isaac PetscAssertPointer(addr, 2); 1084f572ea9SToby Isaac PetscAssertPointer(name, 4); 1094f572ea9SToby Isaac PetscAssertPointer(help, 5); 1105c6c1daeSBarry Smith nname[0] = '-'; 1115c6c1daeSBarry Smith nname[1] = 0; 1129566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH)); 1139566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasHelp(NULL, &printhelp)); 1145c6c1daeSBarry Smith if (printhelp) { 1159566063dSJacob Faibussowitsch PetscCall((*PetscHelpPrintf)(bag->bagcomm, " -%s%s <", bag->bagprefix ? bag->bagprefix : "", name)); 11648a46eb9SPierre Jolivet for (i = 0; i < msize; i++) PetscCall((*PetscHelpPrintf)(bag->bagcomm, "%" PetscInt_FMT " ", *((PetscInt *)addr) + i)); 1179566063dSJacob Faibussowitsch PetscCall((*PetscHelpPrintf)(bag->bagcomm, ">: %s \n", help)); 1185c6c1daeSBarry Smith } 1199566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetIntArray(NULL, bag->bagprefix, nname, (PetscInt *)addr, &tmp, NULL)); 1205c6c1daeSBarry Smith 1219566063dSJacob Faibussowitsch PetscCall(PetscNew(&item)); 1225c6c1daeSBarry Smith item->dtype = PETSC_INT; 1235c6c1daeSBarry Smith item->offset = ((char *)addr) - ((char *)bag); 1245f80ce2aSJacob Faibussowitsch PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help); 12502c9f0b5SLisandro Dalcin item->next = NULL; 1265c6c1daeSBarry Smith item->msize = msize; 1279566063dSJacob Faibussowitsch PetscCall(PetscBagRegister_Private(bag, item, name, help)); 1283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1295c6c1daeSBarry Smith } 1305c6c1daeSBarry Smith 1315c6c1daeSBarry Smith /*@C 13209cbc92aSBarry Smith PetscBagRegisterRealArray - add a `PetscReal` array to a `PetscBag` 1335c6c1daeSBarry Smith 134c3339decSBarry Smith Logically Collective 1355c6c1daeSBarry Smith 136d8d19677SJose E. Roman Input Parameters: 1375c6c1daeSBarry Smith + bag - the bag of values 138811af0c4SBarry Smith . addr - location of real array in struct, for example `¶ms->d` 139811af0c4SBarry Smith . msize - number of entries in the array 140811af0c4SBarry Smith . name - name of the array 1415c6c1daeSBarry Smith - help - longer string with more information about the value 1425c6c1daeSBarry Smith 1435c6c1daeSBarry Smith Level: beginner 1445c6c1daeSBarry Smith 145db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 146db781477SPatrick Sanan `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 147db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()` 1485c6c1daeSBarry Smith @*/ 149d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagRegisterRealArray(PetscBag bag, void *addr, PetscInt msize, const char *name, const char *help) 150d71ae5a4SJacob Faibussowitsch { 1515c6c1daeSBarry Smith PetscBagItem item; 1525c6c1daeSBarry Smith char nname[PETSC_BAG_NAME_LENGTH + 1]; 1535c6c1daeSBarry Smith PetscBool printhelp; 1545c6c1daeSBarry Smith PetscInt i, tmp = msize; 1555c6c1daeSBarry Smith 1565c6c1daeSBarry Smith PetscFunctionBegin; 1574f572ea9SToby Isaac PetscAssertPointer(bag, 1); 1584f572ea9SToby Isaac PetscAssertPointer(addr, 2); 1594f572ea9SToby Isaac PetscAssertPointer(name, 4); 1604f572ea9SToby Isaac PetscAssertPointer(help, 5); 1615c6c1daeSBarry Smith nname[0] = '-'; 1625c6c1daeSBarry Smith nname[1] = 0; 1639566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH)); 1649566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasHelp(NULL, &printhelp)); 1655c6c1daeSBarry Smith if (printhelp) { 1669566063dSJacob Faibussowitsch PetscCall((*PetscHelpPrintf)(bag->bagcomm, " -%s%s <", bag->bagprefix ? bag->bagprefix : "", name)); 16748a46eb9SPierre Jolivet for (i = 0; i < msize; i++) PetscCall((*PetscHelpPrintf)(bag->bagcomm, "%g ", (double)*((PetscReal *)addr) + i)); 1689566063dSJacob Faibussowitsch PetscCall((*PetscHelpPrintf)(bag->bagcomm, ">: %s \n", help)); 1695c6c1daeSBarry Smith } 1709566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetRealArray(NULL, bag->bagprefix, nname, (PetscReal *)addr, &tmp, NULL)); 1715c6c1daeSBarry Smith 1729566063dSJacob Faibussowitsch PetscCall(PetscNew(&item)); 1735c6c1daeSBarry Smith item->dtype = PETSC_REAL; 1745c6c1daeSBarry Smith item->offset = ((char *)addr) - ((char *)bag); 1755f80ce2aSJacob Faibussowitsch PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help); 17602c9f0b5SLisandro Dalcin item->next = NULL; 1775c6c1daeSBarry Smith item->msize = msize; 1789566063dSJacob Faibussowitsch PetscCall(PetscBagRegister_Private(bag, item, name, help)); 1793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1805c6c1daeSBarry Smith } 1815c6c1daeSBarry Smith 1825c6c1daeSBarry Smith /*@C 18309cbc92aSBarry Smith PetscBagRegisterInt - add a `PetscInt` value to a `PetscBag` 1845c6c1daeSBarry Smith 185c3339decSBarry Smith Logically Collective 1865c6c1daeSBarry Smith 187d8d19677SJose E. Roman Input Parameters: 1885c6c1daeSBarry Smith + bag - the bag of values 189811af0c4SBarry Smith . addr - location of integer in struct, for example `¶ms->i` 1905c6c1daeSBarry Smith . mdefault - the initial value 1915c6c1daeSBarry Smith . name - name of the integer 1925c6c1daeSBarry Smith - help - longer string with more information about the value 1935c6c1daeSBarry Smith 1945c6c1daeSBarry Smith Level: beginner 1955c6c1daeSBarry Smith 196db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 197db781477SPatrick Sanan `PetscBagRegisterInt64()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 198db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()` 1995c6c1daeSBarry Smith @*/ 200d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagRegisterInt(PetscBag bag, void *addr, PetscInt mdefault, const char *name, const char *help) 201d71ae5a4SJacob Faibussowitsch { 2025c6c1daeSBarry Smith PetscBagItem item; 2035c6c1daeSBarry Smith char nname[PETSC_BAG_NAME_LENGTH + 1]; 2045c6c1daeSBarry Smith PetscBool printhelp; 2055c6c1daeSBarry Smith 2065c6c1daeSBarry Smith PetscFunctionBegin; 2074f572ea9SToby Isaac PetscAssertPointer(bag, 1); 2084f572ea9SToby Isaac PetscAssertPointer(addr, 2); 2094f572ea9SToby Isaac PetscAssertPointer(name, 4); 2104f572ea9SToby Isaac PetscAssertPointer(help, 5); 2115c6c1daeSBarry Smith nname[0] = '-'; 2125c6c1daeSBarry Smith nname[1] = 0; 2139566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH)); 2149566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasHelp(NULL, &printhelp)); 21548a46eb9SPierre Jolivet if (printhelp) PetscCall((*PetscHelpPrintf)(bag->bagcomm, " -%s%s <%" PetscInt_FMT ">: %s \n", bag->bagprefix ? bag->bagprefix : "", name, mdefault, help)); 2169566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetInt(NULL, bag->bagprefix, nname, &mdefault, NULL)); 2175c6c1daeSBarry Smith 2189566063dSJacob Faibussowitsch PetscCall(PetscNew(&item)); 2195c6c1daeSBarry Smith item->dtype = PETSC_INT; 2205c6c1daeSBarry Smith item->offset = ((char *)addr) - ((char *)bag); 2215f80ce2aSJacob Faibussowitsch PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help); 22202c9f0b5SLisandro Dalcin item->next = NULL; 2235c6c1daeSBarry Smith item->msize = 1; 2245c6c1daeSBarry Smith *(PetscInt *)addr = mdefault; 2259566063dSJacob Faibussowitsch PetscCall(PetscBagRegister_Private(bag, item, name, help)); 2263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2275c6c1daeSBarry Smith } 2285c6c1daeSBarry Smith 2290d349d43SBarry Smith /*@C 230811af0c4SBarry Smith PetscBagRegisterInt64 - add a `PetscInt64` value to a `PetscBag` 2310d349d43SBarry Smith 232c3339decSBarry Smith Logically Collective 2330d349d43SBarry Smith 234d8d19677SJose E. Roman Input Parameters: 2350d349d43SBarry Smith + bag - the bag of values 236811af0c4SBarry Smith . addr - location of integer in struct, for example `¶ms->i` 2370d349d43SBarry Smith . mdefault - the initial value 2380d349d43SBarry Smith . name - name of the integer 2390d349d43SBarry Smith - help - longer string with more information about the value 2400d349d43SBarry Smith 2410d349d43SBarry Smith Level: beginner 2420d349d43SBarry Smith 243db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 244db781477SPatrick Sanan `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 245db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()` 2460d349d43SBarry Smith @*/ 247d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagRegisterInt64(PetscBag bag, void *addr, PetscInt64 mdefault, const char *name, const char *help) 248d71ae5a4SJacob Faibussowitsch { 2490d349d43SBarry Smith PetscBagItem item; 2500d349d43SBarry Smith char nname[PETSC_BAG_NAME_LENGTH + 1]; 2510d349d43SBarry Smith PetscBool printhelp; 2520d349d43SBarry Smith PetscInt odefault = (PetscInt)mdefault; 2530d349d43SBarry Smith PetscBool flg; 2540d349d43SBarry Smith 2550d349d43SBarry Smith PetscFunctionBegin; 2560d349d43SBarry Smith nname[0] = '-'; 2570d349d43SBarry Smith nname[1] = 0; 2589566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH)); 2599566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasHelp(NULL, &printhelp)); 26048a46eb9SPierre Jolivet if (printhelp) PetscCall((*PetscHelpPrintf)(bag->bagcomm, " -%s%s <%" PetscInt_FMT ">: %s \n", bag->bagprefix ? bag->bagprefix : "", name, odefault, help)); 2619566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetInt(NULL, bag->bagprefix, nname, &odefault, &flg)); 262bafee8b4SSatish Balay if (flg) mdefault = (PetscInt64)odefault; 2630d349d43SBarry Smith 2649566063dSJacob Faibussowitsch PetscCall(PetscNew(&item)); 2650d349d43SBarry Smith item->dtype = PETSC_INT; 2660d349d43SBarry Smith item->offset = ((char *)addr) - ((char *)bag); 2675f80ce2aSJacob Faibussowitsch PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help); 26802c9f0b5SLisandro Dalcin item->next = NULL; 2690d349d43SBarry Smith item->msize = 1; 270bafee8b4SSatish Balay *(PetscInt64 *)addr = mdefault; 2719566063dSJacob Faibussowitsch PetscCall(PetscBagRegister_Private(bag, item, name, help)); 2723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2730d349d43SBarry Smith } 2740d349d43SBarry Smith 275dd66f111SBlaise Bourdin /*@C 276811af0c4SBarry Smith PetscBagRegisterBoolArray - add a n `PetscBool` values to a `PetscBag` 277dd66f111SBlaise Bourdin 278c3339decSBarry Smith Logically Collective 279dd66f111SBlaise Bourdin 280d8d19677SJose E. Roman Input Parameters: 281dd66f111SBlaise Bourdin + bag - the bag of values 282811af0c4SBarry Smith . addr - location of boolean array in struct, for example `¶ms->b` 283dd66f111SBlaise Bourdin . msize - number of entries in array 284dd66f111SBlaise Bourdin . name - name of the boolean array 285dd66f111SBlaise Bourdin - help - longer string with more information about the value 286dd66f111SBlaise Bourdin 287dd66f111SBlaise Bourdin Level: beginner 288dd66f111SBlaise Bourdin 289db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 290db781477SPatrick Sanan `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 291db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()` 292dd66f111SBlaise Bourdin @*/ 293d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagRegisterBoolArray(PetscBag bag, void *addr, PetscInt msize, const char *name, const char *help) 294d71ae5a4SJacob Faibussowitsch { 295dd66f111SBlaise Bourdin PetscBagItem item; 296dd66f111SBlaise Bourdin char nname[PETSC_BAG_NAME_LENGTH + 1]; 297dd66f111SBlaise Bourdin PetscBool printhelp; 298dd66f111SBlaise Bourdin PetscInt i, tmp = msize; 299dd66f111SBlaise Bourdin 300dd66f111SBlaise Bourdin PetscFunctionBegin; 3014f572ea9SToby Isaac PetscAssertPointer(bag, 1); 3024f572ea9SToby Isaac PetscAssertPointer(addr, 2); 3034f572ea9SToby Isaac PetscAssertPointer(name, 4); 3044f572ea9SToby Isaac PetscAssertPointer(help, 5); 305dd66f111SBlaise Bourdin nname[0] = '-'; 306dd66f111SBlaise Bourdin nname[1] = 0; 3079566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH)); 3089566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasHelp(NULL, &printhelp)); 309dd66f111SBlaise Bourdin if (printhelp) { 3109566063dSJacob Faibussowitsch PetscCall((*PetscHelpPrintf)(bag->bagcomm, " -%s%s <", bag->bagprefix ? bag->bagprefix : "", name)); 31148a46eb9SPierre Jolivet for (i = 0; i < msize; i++) PetscCall((*PetscHelpPrintf)(bag->bagcomm, "%" PetscInt_FMT " ", *((PetscInt *)addr) + i)); 3129566063dSJacob Faibussowitsch PetscCall((*PetscHelpPrintf)(bag->bagcomm, ">: %s \n", help)); 313dd66f111SBlaise Bourdin } 3149566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBoolArray(NULL, bag->bagprefix, nname, (PetscBool *)addr, &tmp, NULL)); 315dd66f111SBlaise Bourdin 3169566063dSJacob Faibussowitsch PetscCall(PetscNew(&item)); 317dd66f111SBlaise Bourdin item->dtype = PETSC_BOOL; 318dd66f111SBlaise Bourdin item->offset = ((char *)addr) - ((char *)bag); 3195f80ce2aSJacob Faibussowitsch PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help); 32002c9f0b5SLisandro Dalcin item->next = NULL; 321dd66f111SBlaise Bourdin item->msize = msize; 3229566063dSJacob Faibussowitsch PetscCall(PetscBagRegister_Private(bag, item, name, help)); 3233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 324dd66f111SBlaise Bourdin } 325dd66f111SBlaise Bourdin 3265c6c1daeSBarry Smith /*@C 327811af0c4SBarry Smith PetscBagRegisterString - add a string value to a `PetscBag` 3285c6c1daeSBarry Smith 329c3339decSBarry Smith Logically Collective 3305c6c1daeSBarry Smith 331d8d19677SJose E. Roman Input Parameters: 3325c6c1daeSBarry Smith + bag - the bag of values 333811af0c4SBarry Smith . addr - location of start of string in struct, for example `¶ms->mystring` 3345c6c1daeSBarry Smith . msize - length of the string space in the struct 3355c6c1daeSBarry Smith . mdefault - the initial value 3365c6c1daeSBarry Smith . name - name of the string 3375c6c1daeSBarry Smith - help - longer string with more information about the value 3385c6c1daeSBarry Smith 3395c6c1daeSBarry Smith Level: beginner 3405c6c1daeSBarry Smith 34109cbc92aSBarry Smith Note: 34209cbc92aSBarry Smith The struct must have the field char mystring[`msize`]; not char *mystring 3435c6c1daeSBarry Smith 344db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 345db781477SPatrick Sanan `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 346c2e3fba1SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()` 3475c6c1daeSBarry Smith @*/ 348d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagRegisterString(PetscBag bag, void *addr, PetscInt msize, const char *mdefault, const char *name, const char *help) 349d71ae5a4SJacob Faibussowitsch { 3505c6c1daeSBarry Smith PetscBagItem item; 3515c6c1daeSBarry Smith char nname[PETSC_BAG_NAME_LENGTH + 1]; 3525c6c1daeSBarry Smith PetscBool printhelp; 3535c6c1daeSBarry Smith 3545c6c1daeSBarry Smith PetscFunctionBegin; 3554f572ea9SToby Isaac PetscAssertPointer(bag, 1); 3564f572ea9SToby Isaac PetscAssertPointer(addr, 2); 3574f572ea9SToby Isaac PetscAssertPointer(mdefault, 4); 3584f572ea9SToby Isaac PetscAssertPointer(name, 5); 3594f572ea9SToby Isaac PetscAssertPointer(help, 6); 3605c6c1daeSBarry Smith nname[0] = '-'; 3615c6c1daeSBarry Smith nname[1] = 0; 3629566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH)); 3639566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasHelp(NULL, &printhelp)); 36448a46eb9SPierre Jolivet if (printhelp) PetscCall((*PetscHelpPrintf)(bag->bagcomm, " -%s%s <%s>: %s \n", bag->bagprefix ? bag->bagprefix : "", name, mdefault, help)); 3655c6c1daeSBarry Smith 3669566063dSJacob Faibussowitsch PetscCall(PetscNew(&item)); 3675c6c1daeSBarry Smith item->dtype = PETSC_CHAR; 3685c6c1daeSBarry Smith item->offset = ((char *)addr) - ((char *)bag); 3695f80ce2aSJacob Faibussowitsch PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help); 37002c9f0b5SLisandro Dalcin item->next = NULL; 3715c6c1daeSBarry Smith item->msize = msize; 37248a46eb9SPierre Jolivet if (mdefault != (char *)addr) PetscCall(PetscStrncpy((char *)addr, mdefault, msize - 1)); 3739566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetString(NULL, bag->bagprefix, nname, (char *)addr, msize, NULL)); 3749566063dSJacob Faibussowitsch PetscCall(PetscBagRegister_Private(bag, item, name, help)); 3753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3765c6c1daeSBarry Smith } 3775c6c1daeSBarry Smith 3785c6c1daeSBarry Smith /*@C 379811af0c4SBarry Smith PetscBagRegisterReal - add a `PetscReal` value to a `PetscBag` 3805c6c1daeSBarry Smith 381c3339decSBarry Smith Logically Collective 3825c6c1daeSBarry Smith 383d8d19677SJose E. Roman Input Parameters: 3845c6c1daeSBarry Smith + bag - the bag of values 38509cbc92aSBarry Smith . addr - location of `PetscReal` in struct, for example `¶ms->r` 3865c6c1daeSBarry Smith . mdefault - the initial value 3875c6c1daeSBarry Smith . name - name of the variable 3885c6c1daeSBarry Smith - help - longer string with more information about the value 3895c6c1daeSBarry Smith 3905c6c1daeSBarry Smith Level: beginner 3915c6c1daeSBarry Smith 392db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 393db781477SPatrick Sanan `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 394db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()` 3955c6c1daeSBarry Smith @*/ 396d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagRegisterReal(PetscBag bag, void *addr, PetscReal mdefault, const char *name, const char *help) 397d71ae5a4SJacob Faibussowitsch { 3985c6c1daeSBarry Smith PetscBagItem item; 3995c6c1daeSBarry Smith char nname[PETSC_BAG_NAME_LENGTH + 1]; 4005c6c1daeSBarry Smith PetscBool printhelp; 4015c6c1daeSBarry Smith 4025c6c1daeSBarry Smith PetscFunctionBegin; 4034f572ea9SToby Isaac PetscAssertPointer(bag, 1); 4044f572ea9SToby Isaac PetscAssertPointer(addr, 2); 4054f572ea9SToby Isaac PetscAssertPointer(name, 4); 4064f572ea9SToby Isaac PetscAssertPointer(help, 5); 4075c6c1daeSBarry Smith nname[0] = '-'; 4085c6c1daeSBarry Smith nname[1] = 0; 4099566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH)); 4109566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasHelp(NULL, &printhelp)); 41148a46eb9SPierre Jolivet if (printhelp) PetscCall((*PetscHelpPrintf)(bag->bagcomm, " -%s%s <%g>: %s \n", bag->bagprefix ? bag->bagprefix : "", name, (double)mdefault, help)); 4129566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetReal(NULL, bag->bagprefix, nname, &mdefault, NULL)); 4135c6c1daeSBarry Smith 4149566063dSJacob Faibussowitsch PetscCall(PetscNew(&item)); 4155c6c1daeSBarry Smith item->dtype = PETSC_REAL; 4165c6c1daeSBarry Smith item->offset = ((char *)addr) - ((char *)bag); 4175f80ce2aSJacob Faibussowitsch PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help); 41802c9f0b5SLisandro Dalcin item->next = NULL; 4195c6c1daeSBarry Smith item->msize = 1; 4205c6c1daeSBarry Smith *(PetscReal *)addr = mdefault; 4219566063dSJacob Faibussowitsch PetscCall(PetscBagRegister_Private(bag, item, name, help)); 4223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4235c6c1daeSBarry Smith } 4245c6c1daeSBarry Smith 4255c6c1daeSBarry Smith /*@C 426811af0c4SBarry Smith PetscBagRegisterScalar - add a `PetscScalar` value to a `PetscBag` 4275c6c1daeSBarry Smith 428c3339decSBarry Smith Logically Collective 4295c6c1daeSBarry Smith 430d8d19677SJose E. Roman Input Parameters: 4315c6c1daeSBarry Smith + bag - the bag of values 43209cbc92aSBarry Smith . addr - location of `PetscScalar` in struct, for example `¶ms->c` 4335c6c1daeSBarry Smith . mdefault - the initial value 4345c6c1daeSBarry Smith . name - name of the variable 4355c6c1daeSBarry Smith - help - longer string with more information about the value 4365c6c1daeSBarry Smith 4375c6c1daeSBarry Smith Level: beginner 4385c6c1daeSBarry Smith 439db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 44042747ad1SJacob Faibussowitsch `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagSetFromOptions()`, 44142747ad1SJacob Faibussowitsch `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()` 4425c6c1daeSBarry Smith @*/ 443d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagRegisterScalar(PetscBag bag, void *addr, PetscScalar mdefault, const char *name, const char *help) 444d71ae5a4SJacob Faibussowitsch { 4455c6c1daeSBarry Smith PetscBagItem item; 4465c6c1daeSBarry Smith char nname[PETSC_BAG_NAME_LENGTH + 1]; 4475c6c1daeSBarry Smith PetscBool printhelp; 4485c6c1daeSBarry Smith 4495c6c1daeSBarry Smith PetscFunctionBegin; 4504f572ea9SToby Isaac PetscAssertPointer(bag, 1); 4514f572ea9SToby Isaac PetscAssertPointer(addr, 2); 4524f572ea9SToby Isaac PetscAssertPointer(name, 4); 4534f572ea9SToby Isaac PetscAssertPointer(help, 5); 4545c6c1daeSBarry Smith nname[0] = '-'; 4555c6c1daeSBarry Smith nname[1] = 0; 4569566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH)); 4579566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasHelp(NULL, &printhelp)); 45848a46eb9SPierre Jolivet if (printhelp) PetscCall((*PetscHelpPrintf)(bag->bagcomm, " -%s%s <%g + %gi>: %s \n", bag->bagprefix ? bag->bagprefix : "", name, (double)PetscRealPart(mdefault), (double)PetscImaginaryPart(mdefault), help)); 4599566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetScalar(NULL, bag->bagprefix, nname, &mdefault, NULL)); 4605c6c1daeSBarry Smith 4619566063dSJacob Faibussowitsch PetscCall(PetscNew(&item)); 4625c6c1daeSBarry Smith item->dtype = PETSC_SCALAR; 4635c6c1daeSBarry Smith item->offset = ((char *)addr) - ((char *)bag); 4645f80ce2aSJacob Faibussowitsch PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help); 46502c9f0b5SLisandro Dalcin item->next = NULL; 4665c6c1daeSBarry Smith item->msize = 1; 4675c6c1daeSBarry Smith *(PetscScalar *)addr = mdefault; 4689566063dSJacob Faibussowitsch PetscCall(PetscBagRegister_Private(bag, item, name, help)); 4693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4705c6c1daeSBarry Smith } 4715c6c1daeSBarry Smith 4725c6c1daeSBarry Smith /*@C 473811af0c4SBarry Smith PetscBagRegisterBool - add a `PetscBool` to a `PetscBag` 4745c6c1daeSBarry Smith 475c3339decSBarry Smith Logically Collective 4765c6c1daeSBarry Smith 477d8d19677SJose E. Roman Input Parameters: 4785c6c1daeSBarry Smith + bag - the bag of values 47909cbc92aSBarry Smith . addr - location of `PetscBool` in struct, for example `¶ms->b` 480811af0c4SBarry Smith . mdefault - the initial value, either `PETSC_FALSE` or `PETSC_TRUE` 4815c6c1daeSBarry Smith . name - name of the variable 4825c6c1daeSBarry Smith - help - longer string with more information about the value 4835c6c1daeSBarry Smith 4845c6c1daeSBarry Smith Level: beginner 4855c6c1daeSBarry Smith 486db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 48742747ad1SJacob Faibussowitsch `PetscBagRegisterInt()`, `PetscBagRegisterScalar()` 488db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()` 4895c6c1daeSBarry Smith @*/ 490d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagRegisterBool(PetscBag bag, void *addr, PetscBool mdefault, const char *name, const char *help) 491d71ae5a4SJacob Faibussowitsch { 4925c6c1daeSBarry Smith PetscBagItem item; 4935c6c1daeSBarry Smith char nname[PETSC_BAG_NAME_LENGTH + 1]; 4945c6c1daeSBarry Smith PetscBool printhelp; 4955c6c1daeSBarry Smith 4965c6c1daeSBarry Smith PetscFunctionBegin; 4974f572ea9SToby Isaac PetscAssertPointer(bag, 1); 4984f572ea9SToby Isaac PetscAssertPointer(addr, 2); 4994f572ea9SToby Isaac PetscAssertPointer(name, 4); 5004f572ea9SToby Isaac PetscAssertPointer(help, 5); 5015c6c1daeSBarry Smith /* the checks here with != PETSC_FALSE and PETSC_TRUE is a special case; here we truly demand that the value be 0 or 1 */ 5025f80ce2aSJacob Faibussowitsch PetscCheck(mdefault == PETSC_FALSE || mdefault == PETSC_TRUE, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Boolean %s %s must be boolean; integer value %d", name, help, (int)mdefault); 5035c6c1daeSBarry Smith nname[0] = '-'; 5045c6c1daeSBarry Smith nname[1] = 0; 5059566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(nname, name, PETSC_BAG_NAME_LENGTH)); 5069566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasHelp(NULL, &printhelp)); 50748a46eb9SPierre Jolivet if (printhelp) PetscCall((*PetscHelpPrintf)(bag->bagcomm, " -%s%s <%s>: %s \n", bag->bagprefix ? bag->bagprefix : "", name, PetscBools[mdefault], help)); 5089566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(NULL, bag->bagprefix, nname, &mdefault, NULL)); 5095c6c1daeSBarry Smith 5109566063dSJacob Faibussowitsch PetscCall(PetscNew(&item)); 5115c6c1daeSBarry Smith item->dtype = PETSC_BOOL; 5125c6c1daeSBarry Smith item->offset = ((char *)addr) - ((char *)bag); 5135f80ce2aSJacob Faibussowitsch PetscCheck(item->offset <= bag->bagsize, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Registered item %s %s is not in bag memory space", name, help); 51402c9f0b5SLisandro Dalcin item->next = NULL; 5155c6c1daeSBarry Smith item->msize = 1; 5165c6c1daeSBarry Smith *(PetscBool *)addr = mdefault; 5179566063dSJacob Faibussowitsch PetscCall(PetscBagRegister_Private(bag, item, name, help)); 5183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5195c6c1daeSBarry Smith } 5205c6c1daeSBarry Smith 5215c6c1daeSBarry Smith /*@C 522811af0c4SBarry Smith PetscBagDestroy - Destroys a `PetscBag` 5235c6c1daeSBarry Smith 524c3339decSBarry Smith Collective 5255c6c1daeSBarry Smith 5265c6c1daeSBarry Smith Input Parameter: 5275c6c1daeSBarry Smith . bag - the bag of values 5285c6c1daeSBarry Smith 5295c6c1daeSBarry Smith Level: beginner 5305c6c1daeSBarry Smith 531db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 532db781477SPatrick Sanan `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 533db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()` 5345c6c1daeSBarry Smith @*/ 535d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagDestroy(PetscBag *bag) 536d71ae5a4SJacob Faibussowitsch { 5375f80ce2aSJacob Faibussowitsch PetscBagItem nitem; 5385c6c1daeSBarry Smith 5395c6c1daeSBarry Smith PetscFunctionBegin; 5403ba16761SJacob Faibussowitsch if (!*bag) PetscFunctionReturn(PETSC_SUCCESS); 5414f572ea9SToby Isaac PetscAssertPointer(*bag, 1); 5425f80ce2aSJacob Faibussowitsch nitem = (*bag)->bagitems; 5435c6c1daeSBarry Smith while (nitem) { 5445f80ce2aSJacob Faibussowitsch PetscBagItem item = nitem->next; 5455f80ce2aSJacob Faibussowitsch 5469566063dSJacob Faibussowitsch if (nitem->list) PetscCall(PetscStrArrayDestroy(&nitem->list)); 5479566063dSJacob Faibussowitsch PetscCall(PetscFree(nitem)); 5485c6c1daeSBarry Smith nitem = item; 5495c6c1daeSBarry Smith } 5509566063dSJacob Faibussowitsch if ((*bag)->bagprefix) PetscCall(PetscFree((*bag)->bagprefix)); 5519566063dSJacob Faibussowitsch PetscCall(PetscFree(*bag)); 5523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5535c6c1daeSBarry Smith } 5545c6c1daeSBarry Smith 5555c6c1daeSBarry Smith /*@ 556811af0c4SBarry Smith PetscBagSetFromOptions - Allows setting entries to a `PetscBag` using the options database 5575c6c1daeSBarry Smith 558c3339decSBarry Smith Collective 5595c6c1daeSBarry Smith 5605c6c1daeSBarry Smith Input Parameter: 5615c6c1daeSBarry Smith . bag - the bag of values 5625c6c1daeSBarry Smith 5635c6c1daeSBarry Smith Level: beginner 5645c6c1daeSBarry Smith 565811af0c4SBarry Smith Note: 566811af0c4SBarry Smith The options database keys for the entries are of the form `-[bagprefix]_name value` 567811af0c4SBarry Smith 568db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagDestroy()`, `PetscBagLoad()`, `PetscBagGetData()` 569db781477SPatrick Sanan `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 57042747ad1SJacob Faibussowitsch `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagView()`, `PetscBagRegisterEnum()` 5715c6c1daeSBarry Smith @*/ 572d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagSetFromOptions(PetscBag bag) 573d71ae5a4SJacob Faibussowitsch { 5745c6c1daeSBarry Smith PetscBagItem nitem = bag->bagitems; 5755c6c1daeSBarry Smith char name[PETSC_BAG_NAME_LENGTH + 1], helpname[PETSC_BAG_NAME_LENGTH + PETSC_BAG_HELP_LENGTH + 3]; 5765c6c1daeSBarry Smith PetscInt n; 5775c6c1daeSBarry Smith 5785c6c1daeSBarry Smith PetscFunctionBegin; 5794f572ea9SToby Isaac PetscAssertPointer(bag, 1); 5809566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(helpname, bag->bagname, sizeof(helpname))); 5819566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(helpname, " ", sizeof(helpname))); 5829566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(helpname, bag->baghelp, sizeof(helpname))); 583d0609cedSBarry Smith PetscOptionsBegin(bag->bagcomm, bag->bagprefix, helpname, NULL); 5845c6c1daeSBarry Smith while (nitem) { 5855c6c1daeSBarry Smith name[0] = '-'; 5865c6c1daeSBarry Smith name[1] = 0; 5879566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(name, nitem->name, sizeof(name))); 5885c6c1daeSBarry Smith if (nitem->dtype == PETSC_CHAR) { /* special handling for fortran required? [due to space padding vs null termination] */ 5895c6c1daeSBarry Smith char *value = (char *)(((char *)bag) + nitem->offset); 5909566063dSJacob Faibussowitsch PetscCall(PetscOptionsString(name, nitem->help, "", value, value, nitem->msize, NULL)); 5915c6c1daeSBarry Smith } else if (nitem->dtype == PETSC_REAL) { 5925c6c1daeSBarry Smith PetscReal *value = (PetscReal *)(((char *)bag) + nitem->offset); 5935c6c1daeSBarry Smith if (nitem->msize == 1) { 5949566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal(name, nitem->help, "", *value, value, NULL)); 5955c6c1daeSBarry Smith } else { 5965c6c1daeSBarry Smith n = nitem->msize; 5979566063dSJacob Faibussowitsch PetscCall(PetscOptionsRealArray(name, nitem->help, "", value, &n, NULL)); 5985c6c1daeSBarry Smith } 5995c6c1daeSBarry Smith } else if (nitem->dtype == PETSC_SCALAR) { 6005c6c1daeSBarry Smith PetscScalar *value = (PetscScalar *)(((char *)bag) + nitem->offset); 6019566063dSJacob Faibussowitsch PetscCall(PetscOptionsScalar(name, nitem->help, "", *value, value, NULL)); 6025c6c1daeSBarry Smith } else if (nitem->dtype == PETSC_INT) { 6035c6c1daeSBarry Smith PetscInt *value = (PetscInt *)(((char *)bag) + nitem->offset); 6045c6c1daeSBarry Smith if (nitem->msize == 1) { 6059566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt(name, nitem->help, "", *value, value, NULL)); 6065c6c1daeSBarry Smith } else { 6075c6c1daeSBarry Smith n = nitem->msize; 6089566063dSJacob Faibussowitsch PetscCall(PetscOptionsIntArray(name, nitem->help, "", value, &n, NULL)); 6095c6c1daeSBarry Smith } 6105c6c1daeSBarry Smith } else if (nitem->dtype == PETSC_ENUM) { 6115c6c1daeSBarry Smith PetscEnum *value = (PetscEnum *)(((char *)bag) + nitem->offset); 6125c6c1daeSBarry Smith PetscInt i = 0; 6139371c9d4SSatish Balay while (nitem->list[i++]) 6149371c9d4SSatish Balay ; 6159566063dSJacob Faibussowitsch PetscCall(PetscOptionsEnum(name, nitem->help, nitem->list[i - 3], (const char *const *)nitem->list, *value, value, NULL)); 6165c6c1daeSBarry Smith } else if (nitem->dtype == PETSC_BOOL) { 6175c6c1daeSBarry Smith PetscBool *value = (PetscBool *)(((char *)bag) + nitem->offset); 618dd66f111SBlaise Bourdin if (nitem->msize == 1) { 6199566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool(name, nitem->help, "", *value, value, NULL)); 620dd66f111SBlaise Bourdin } else { 621dd66f111SBlaise Bourdin n = nitem->msize; 6229566063dSJacob Faibussowitsch PetscCall(PetscOptionsBoolArray(name, nitem->help, "", value, &n, NULL)); 623dd66f111SBlaise Bourdin } 6245c6c1daeSBarry Smith } 6255c6c1daeSBarry Smith nitem = nitem->next; 6265c6c1daeSBarry Smith } 627d0609cedSBarry Smith PetscOptionsEnd(); 6283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6295c6c1daeSBarry Smith } 6305c6c1daeSBarry Smith 6315c6c1daeSBarry Smith /*@C 6325c6c1daeSBarry Smith PetscBagView - Views a bag of values as either ASCII text or a binary file 6335c6c1daeSBarry Smith 634c3339decSBarry Smith Collective 6355c6c1daeSBarry Smith 636d8d19677SJose E. Roman Input Parameters: 6375c6c1daeSBarry Smith + bag - the bag of values 638aec76313SJacob Faibussowitsch - view - location to view the values 6395c6c1daeSBarry Smith 6405c6c1daeSBarry Smith Level: beginner 6415c6c1daeSBarry Smith 642811af0c4SBarry Smith Note: 643811af0c4SBarry Smith Currently PETSc bags saved in a binary file can only be read back 64409cbc92aSBarry Smith in on a machine with the same binary format. 6455c6c1daeSBarry Smith 646db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagDestroy()`, `PetscBagLoad()`, `PetscBagGetData()` 647db781477SPatrick Sanan `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()`, `PetscBagRegisterEnum()` 648db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()` 6495c6c1daeSBarry Smith @*/ 650d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagView(PetscBag bag, PetscViewer view) 651d71ae5a4SJacob Faibussowitsch { 6525c6c1daeSBarry Smith PetscBool isascii, isbinary; 6535c6c1daeSBarry Smith PetscBagItem nitem = bag->bagitems; 6545c6c1daeSBarry Smith 6555c6c1daeSBarry Smith PetscFunctionBegin; 6564f572ea9SToby Isaac PetscAssertPointer(bag, 1); 6575f80ce2aSJacob Faibussowitsch PetscValidHeaderSpecific(view, PETSC_VIEWER_CLASSID, 2); 6589566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)view, PETSCVIEWERASCII, &isascii)); 6599566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)view, PETSCVIEWERBINARY, &isbinary)); 6605c6c1daeSBarry Smith if (isascii) { 6613ffde785SBarry Smith if (bag->bagprefix) { 6629566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, "PetscBag Object: %s (%s) %s\n", bag->bagname, bag->bagprefix, bag->baghelp)); 6633ffde785SBarry Smith } else { 6649566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, "PetscBag Object: %s %s\n", bag->bagname, bag->baghelp)); 6653ffde785SBarry Smith } 6665c6c1daeSBarry Smith while (nitem) { 6675c6c1daeSBarry Smith if (nitem->dtype == PETSC_CHAR) { 6685c6c1daeSBarry Smith char *value = (char *)(((char *)bag) + nitem->offset); 669da81f932SPierre Jolivet char tmp = value[nitem->msize - 1]; /* special handling for fortran chars without null terminator */ 6705c6c1daeSBarry Smith value[nitem->msize - 1] = 0; 6719566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, " %s = %s; %s\n", nitem->name, value, nitem->help)); 6725c6c1daeSBarry Smith value[nitem->msize - 1] = tmp; 6735c6c1daeSBarry Smith } else if (nitem->dtype == PETSC_REAL) { 6745c6c1daeSBarry Smith PetscReal *value = (PetscReal *)(((char *)bag) + nitem->offset); 6755c6c1daeSBarry Smith PetscInt i; 6769566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, " %s = ", nitem->name)); 67748a46eb9SPierre Jolivet for (i = 0; i < nitem->msize; i++) PetscCall(PetscViewerASCIIPrintf(view, "%g ", (double)value[i])); 6789566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, "; %s\n", nitem->help)); 6795c6c1daeSBarry Smith } else if (nitem->dtype == PETSC_SCALAR) { 6805c6c1daeSBarry Smith PetscScalar value = *(PetscScalar *)(((char *)bag) + nitem->offset); 6815c6c1daeSBarry Smith #if defined(PETSC_USE_COMPLEX) 6828627564fSBarry Smith if ((double)PetscImaginaryPart(value)) { 6839566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, " %s = %g + %gi; %s\n", nitem->name, (double)PetscRealPart(value), (double)PetscImaginaryPart(value), nitem->help)); 6848627564fSBarry Smith } else { 6859566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, " %s = %g; %s\n", nitem->name, (double)PetscRealPart(value), nitem->help)); 6868627564fSBarry Smith } 6875c6c1daeSBarry Smith #else 6889566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, " %s = %g; %s\n", nitem->name, (double)value, nitem->help)); 6895c6c1daeSBarry Smith #endif 6905c6c1daeSBarry Smith } else if (nitem->dtype == PETSC_INT) { 6915c6c1daeSBarry Smith PetscInt i, *value = (PetscInt *)(((char *)bag) + nitem->offset); 6929566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, " %s = ", nitem->name)); 69348a46eb9SPierre Jolivet for (i = 0; i < nitem->msize; i++) PetscCall(PetscViewerASCIIPrintf(view, "%" PetscInt_FMT " ", value[i])); 6949566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, "; %s\n", nitem->help)); 6955c6c1daeSBarry Smith } else if (nitem->dtype == PETSC_BOOL) { 696dd66f111SBlaise Bourdin PetscBool *value = (PetscBool *)(((char *)bag) + nitem->offset); 697dd66f111SBlaise Bourdin PetscInt i; 6985c6c1daeSBarry Smith /* some Fortran compilers use -1 as boolean */ 6999566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, " %s = ", nitem->name)); 700dd66f111SBlaise Bourdin for (i = 0; i < nitem->msize; i++) { 701dd66f111SBlaise Bourdin if (((int)value[i]) == -1) value[i] = PETSC_TRUE; 7025c6c1daeSBarry Smith /* the checks here with != PETSC_FALSE and PETSC_TRUE is a special case; here we truly demand that the value be 0 or 1 */ 703*f4f49eeaSPierre Jolivet PetscCheck(value[i] == PETSC_FALSE || value[i] == PETSC_TRUE, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Boolean value for %s %s is corrupt; integer value %" PetscInt_FMT, nitem->name, nitem->help, (PetscInt)value[i]); 7049566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, " %s", PetscBools[value[i]])); 705dd66f111SBlaise Bourdin } 7069566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, "; %s\n", nitem->help)); 7075c6c1daeSBarry Smith } else if (nitem->dtype == PETSC_ENUM) { 7085c6c1daeSBarry Smith PetscEnum value = *(PetscEnum *)(((char *)bag) + nitem->offset); 7095c6c1daeSBarry Smith PetscInt i = 0; 7109371c9d4SSatish Balay while (nitem->list[i++]) 7119371c9d4SSatish Balay ; 7129566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(view, " %s = %s; (%s) %s\n", nitem->name, nitem->list[value], nitem->list[i - 3], nitem->help)); 7135c6c1daeSBarry Smith } 7145c6c1daeSBarry Smith nitem = nitem->next; 7155c6c1daeSBarry Smith } 7165c6c1daeSBarry Smith } else if (isbinary) { 7175c6c1daeSBarry Smith PetscInt classid = PETSC_BAG_FILE_CLASSID, dtype; 7185c6c1daeSBarry Smith PetscInt deprecatedbagsize = 0; 719a261c58fSBarry Smith PetscViewerFormat format; 7209566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(view, &classid, 1, PETSC_INT)); 7219566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(view, &deprecatedbagsize, 1, PETSC_INT)); 7229566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(view, &bag->count, 1, PETSC_INT)); 7239566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(view, bag->bagname, PETSC_BAG_NAME_LENGTH, PETSC_CHAR)); 7249566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(view, bag->baghelp, PETSC_BAG_HELP_LENGTH, PETSC_CHAR)); 7255c6c1daeSBarry Smith while (nitem) { 7269566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(view, &nitem->offset, 1, PETSC_INT)); 7275c6c1daeSBarry Smith dtype = (PetscInt)nitem->dtype; 7289566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(view, &dtype, 1, PETSC_INT)); 7299566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(view, nitem->name, PETSC_BAG_NAME_LENGTH, PETSC_CHAR)); 7309566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(view, nitem->help, PETSC_BAG_HELP_LENGTH, PETSC_CHAR)); 7319566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(view, &nitem->msize, 1, PETSC_INT)); 7325c6c1daeSBarry Smith /* some Fortran compilers use -1 as boolean */ 733*f4f49eeaSPierre Jolivet if (dtype == PETSC_BOOL && (*(int *)(((char *)bag) + nitem->offset) == -1)) *(int *)(((char *)bag) + nitem->offset) = PETSC_TRUE; 7345c6c1daeSBarry Smith 7359566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(view, (((char *)bag) + nitem->offset), nitem->msize, nitem->dtype)); 73648a46eb9SPierre Jolivet if (dtype == PETSC_ENUM) PetscCall(PetscViewerBinaryWriteStringArray(view, (const char *const *)nitem->list)); 7375c6c1daeSBarry Smith nitem = nitem->next; 7385c6c1daeSBarry Smith } 7399566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(view, &format)); 740a261c58fSBarry Smith if (format == PETSC_VIEWER_BINARY_MATLAB) { 741a261c58fSBarry Smith MPI_Comm comm; 742a261c58fSBarry Smith FILE *info; 7439566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)view, &comm)); 7449566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryGetInfoPointer(view, &info)); 7459566063dSJacob Faibussowitsch PetscCall(PetscFPrintf(comm, info, "#--- begin code written by PetscViewerBinary for MATLAB format ---#\n")); 7469566063dSJacob Faibussowitsch PetscCall(PetscFPrintf(comm, info, "#$$ Set.%s = PetscBinaryRead(fd);\n", bag->bagname)); 7479566063dSJacob Faibussowitsch PetscCall(PetscFPrintf(comm, info, "#--- end code written by PetscViewerBinary for MATLAB format ---#\n\n")); 748a261c58fSBarry Smith } 749a261c58fSBarry Smith } 7503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7515c6c1daeSBarry Smith } 7525c6c1daeSBarry Smith 7535c6c1daeSBarry Smith /*@C 75409cbc92aSBarry Smith PetscBagViewFromOptions - Processes command line options to determine if/how a `PetscBag` is to be viewed. 755173f9484SMatthew G. Knepley 756c3339decSBarry Smith Collective 757173f9484SMatthew G. Knepley 758173f9484SMatthew G. Knepley Input Parameters: 759aec76313SJacob Faibussowitsch + bag - the object 76009cbc92aSBarry Smith . bobj - optional other object that provides prefix (if `NULL` then the prefix in obj is used) 761173f9484SMatthew G. Knepley - optionname - option to activate viewing 762478db826SMatthew G. Knepley 763173f9484SMatthew G. Knepley Level: intermediate 764478db826SMatthew G. Knepley 765db781477SPatrick Sanan .seealso: `PetscBagCreate()`, `PetscBag`, `PetscViewer` 766173f9484SMatthew G. Knepley @*/ 767d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagViewFromOptions(PetscBag bag, PetscObject bobj, const char optionname[]) 768d71ae5a4SJacob Faibussowitsch { 769173f9484SMatthew G. Knepley static PetscBool incall = PETSC_FALSE; 770173f9484SMatthew G. Knepley PetscViewer viewer; 771173f9484SMatthew G. Knepley PetscViewerFormat format; 772173f9484SMatthew G. Knepley const char *prefix, *bprefix = NULL; 773173f9484SMatthew G. Knepley PetscBool flg; 774173f9484SMatthew G. Knepley 775173f9484SMatthew G. Knepley PetscFunctionBegin; 7763ba16761SJacob Faibussowitsch if (incall) PetscFunctionReturn(PETSC_SUCCESS); 777173f9484SMatthew G. Knepley incall = PETSC_TRUE; 7784f572ea9SToby Isaac PetscAssertPointer(bag, 1); 7799566063dSJacob Faibussowitsch if (bobj) PetscCall(PetscObjectGetOptionsPrefix(bobj, &bprefix)); 780173f9484SMatthew G. Knepley prefix = bobj ? bprefix : bag->bagprefix; 7819566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetViewer(bag->bagcomm, NULL, prefix, optionname, &viewer, &format, &flg)); 782173f9484SMatthew G. Knepley if (flg) { 7839566063dSJacob Faibussowitsch PetscCall(PetscViewerPushFormat(viewer, format)); 7849566063dSJacob Faibussowitsch PetscCall(PetscBagView(bag, viewer)); 7859566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 7869566063dSJacob Faibussowitsch PetscCall(PetscViewerPopFormat(viewer)); 787cd791dc2SBarry Smith PetscCall(PetscOptionsRestoreViewer(&viewer)); 788173f9484SMatthew G. Knepley } 789173f9484SMatthew G. Knepley incall = PETSC_FALSE; 7903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 791173f9484SMatthew G. Knepley } 792173f9484SMatthew G. Knepley 793173f9484SMatthew G. Knepley /*@C 7945c6c1daeSBarry Smith PetscBagLoad - Loads a bag of values from a binary file 7955c6c1daeSBarry Smith 796c3339decSBarry Smith Collective 7975c6c1daeSBarry Smith 798d8d19677SJose E. Roman Input Parameters: 799aec76313SJacob Faibussowitsch + view - file to load values from 8005c6c1daeSBarry Smith - bag - the bag of values 8015c6c1daeSBarry Smith 8025c6c1daeSBarry Smith Level: beginner 8035c6c1daeSBarry Smith 80409cbc92aSBarry Smith Note: 80509cbc92aSBarry Smith You must have created and registered all the fields in the bag before loading into it. This only loads values. 80609cbc92aSBarry Smith 807db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagDestroy()`, `PetscBagView()`, `PetscBagGetData()` 808db781477SPatrick Sanan `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 809db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagGetName()`, `PetscBagRegisterEnum()` 8105c6c1daeSBarry Smith @*/ 811d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagLoad(PetscViewer view, PetscBag bag) 812d71ae5a4SJacob Faibussowitsch { 8135c6c1daeSBarry Smith PetscBool isbinary; 8145f80ce2aSJacob Faibussowitsch PetscInt classid, bagcount, dtype, msize, offset, deprecatedbagsize; 8155c6c1daeSBarry Smith char name[PETSC_BAG_NAME_LENGTH], help[PETSC_BAG_HELP_LENGTH], **list; 8165c6c1daeSBarry Smith PetscBagItem nitem; 8175c6c1daeSBarry Smith MPI_Comm comm; 8185c6c1daeSBarry Smith PetscMPIInt flag; 8195c6c1daeSBarry Smith 8205c6c1daeSBarry Smith PetscFunctionBegin; 8215f80ce2aSJacob Faibussowitsch PetscValidHeaderSpecific(view, PETSC_VIEWER_CLASSID, 1); 8224f572ea9SToby Isaac PetscAssertPointer(bag, 2); 8239566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)view, &comm)); 8249566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(comm, bag->bagcomm, &flag)); 8255f80ce2aSJacob Faibussowitsch PetscCheck(flag == MPI_CONGRUENT || flag == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "Different communicators in the viewer and bag"); 8269566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)view, PETSCVIEWERBINARY, &isbinary)); 8275f80ce2aSJacob Faibussowitsch PetscCheck(isbinary, PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for this viewer type"); 8285c6c1daeSBarry Smith 8299566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, &classid, 1, NULL, PETSC_INT)); 8305f80ce2aSJacob Faibussowitsch PetscCheck(classid == PETSC_BAG_FILE_CLASSID, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Not PetscBag next in binary file"); 8319566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, &deprecatedbagsize, 1, NULL, PETSC_INT)); 8329566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, &bagcount, 1, NULL, PETSC_INT)); 8335f80ce2aSJacob Faibussowitsch PetscCheck(bagcount == bag->count, comm, PETSC_ERR_ARG_INCOMP, "Bag in file has different number of entries %d then passed in bag %d", (int)bagcount, (int)bag->count); 8349566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, bag->bagname, PETSC_BAG_NAME_LENGTH, NULL, PETSC_CHAR)); 8359566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, bag->baghelp, PETSC_BAG_HELP_LENGTH, NULL, PETSC_CHAR)); 8365c6c1daeSBarry Smith 8375c6c1daeSBarry Smith nitem = bag->bagitems; 8385f80ce2aSJacob Faibussowitsch for (PetscInt i = 0; i < bagcount; i++) { 8399566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, &offset, 1, NULL, PETSC_INT)); 8405c6c1daeSBarry Smith /* ignore the offset in the file */ 8419566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, &dtype, 1, NULL, PETSC_INT)); 8429566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, name, PETSC_BAG_NAME_LENGTH, NULL, PETSC_CHAR)); 8439566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, help, PETSC_BAG_HELP_LENGTH, NULL, PETSC_CHAR)); 8449566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, &msize, 1, NULL, PETSC_INT)); 8455c6c1daeSBarry Smith 8465c6c1daeSBarry Smith if (dtype == (PetscInt)PETSC_CHAR) { 8479566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, ((char *)bag) + nitem->offset, msize, NULL, PETSC_CHAR)); 8485c6c1daeSBarry Smith } else if (dtype == (PetscInt)PETSC_REAL) { 8499566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, ((char *)bag) + nitem->offset, msize, NULL, PETSC_REAL)); 8505c6c1daeSBarry Smith } else if (dtype == (PetscInt)PETSC_SCALAR) { 8519566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, ((char *)bag) + nitem->offset, 1, NULL, PETSC_SCALAR)); 8525c6c1daeSBarry Smith } else if (dtype == (PetscInt)PETSC_INT) { 8539566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, ((char *)bag) + nitem->offset, msize, NULL, PETSC_INT)); 8545c6c1daeSBarry Smith } else if (dtype == (PetscInt)PETSC_BOOL) { 8559566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, ((char *)bag) + nitem->offset, msize, NULL, PETSC_BOOL)); 8565c6c1daeSBarry Smith } else if (dtype == (PetscInt)PETSC_ENUM) { 8579566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(view, ((char *)bag) + nitem->offset, 1, NULL, PETSC_ENUM)); 8589566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadStringArray(view, &list)); 8595c6c1daeSBarry Smith /* don't need to save list because it is already registered in the bag */ 8609566063dSJacob Faibussowitsch PetscCall(PetscFree(list)); 8615c6c1daeSBarry Smith } 8625c6c1daeSBarry Smith nitem = nitem->next; 8635c6c1daeSBarry Smith } 8643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8655c6c1daeSBarry Smith } 8665c6c1daeSBarry Smith 867e8976759SBarry Smith /*@C 86809cbc92aSBarry Smith PetscBagCreate - Create a bag of values. A `PetscBag` is a representation of a C struct that can be saved to and read from files, 86909cbc92aSBarry Smith can have values set from the options database 8705c6c1daeSBarry Smith 871d083f849SBarry Smith Collective 8725c6c1daeSBarry Smith 8735c6c1daeSBarry Smith Input Parameters: 8745c6c1daeSBarry Smith + comm - communicator to share bag 875811af0c4SBarry Smith - bagsize - size of the C structure holding the values, for example sizeof(mystruct) 8765c6c1daeSBarry Smith 8775c6c1daeSBarry Smith Output Parameter: 8785c6c1daeSBarry Smith . bag - the bag of values 8795c6c1daeSBarry Smith 880aec76313SJacob Faibussowitsch Level: intermediate 88109cbc92aSBarry Smith 8825c6c1daeSBarry Smith Notes: 883811af0c4SBarry Smith After creating the bag, for each entry in the C struct call the appropriate `PetscBagRegisterInt()` etc to define the C structs layout 884811af0c4SBarry Smith 885811af0c4SBarry Smith The size of the A struct must be small enough to fit in a `PetscInt`; by default 886811af0c4SBarry Smith `PetscInt` is 4 bytes; this means a bag cannot be larger than 2 gigabytes in length. 8875c6c1daeSBarry Smith The warning about casting to a shorter length can be ignored below unless your A struct is too large 8885c6c1daeSBarry Smith 889db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagGetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 890db781477SPatrick Sanan `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 89142747ad1SJacob Faibussowitsch `PetscBagSetFromOptions()`, `PetscBagDestroy()`, `PetscBagRegisterEnum()` 8925c6c1daeSBarry Smith @*/ 893d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagCreate(MPI_Comm comm, size_t bagsize, PetscBag *bag) 894d71ae5a4SJacob Faibussowitsch { 8955f80ce2aSJacob Faibussowitsch const size_t totalsize = bagsize + sizeof(struct _n_PetscBag) + sizeof(PetscScalar); 8965c6c1daeSBarry Smith 8975c6c1daeSBarry Smith PetscFunctionBegin; 8984f572ea9SToby Isaac PetscAssertPointer(bag, 3); 8999566063dSJacob Faibussowitsch PetscCall(PetscInfo(NULL, "Creating Bag with total size %d\n", (int)totalsize)); 9009566063dSJacob Faibussowitsch PetscCall(PetscCalloc(totalsize, bag)); 901a297a907SKarl Rupp 9025f80ce2aSJacob Faibussowitsch (*bag)->bagsize = totalsize; 9035c6c1daeSBarry Smith (*bag)->bagcomm = comm; 9040298fd71SBarry Smith (*bag)->bagprefix = NULL; 9055c6c1daeSBarry Smith (*bag)->structlocation = (void *)(((char *)(*bag)) + sizeof(PetscScalar) * (sizeof(struct _n_PetscBag) / sizeof(PetscScalar)) + sizeof(PetscScalar)); 9063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9075c6c1daeSBarry Smith } 9085c6c1daeSBarry Smith 9095c6c1daeSBarry Smith /*@C 9105c6c1daeSBarry Smith PetscBagSetName - Sets the name of a bag of values 9115c6c1daeSBarry Smith 9125c6c1daeSBarry Smith Not Collective 9135c6c1daeSBarry Smith 914aec76313SJacob Faibussowitsch Level: intermediate 9155c6c1daeSBarry Smith 9165c6c1daeSBarry Smith Input Parameters: 9175c6c1daeSBarry Smith + bag - the bag of values 9185c6c1daeSBarry Smith . name - the name assigned to the bag 9195c6c1daeSBarry Smith - help - help message for bag 9205c6c1daeSBarry Smith 921db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagGetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 922db781477SPatrick Sanan `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 923db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagDestroy()`, `PetscBagRegisterEnum()` 9245c6c1daeSBarry Smith @*/ 925d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagSetName(PetscBag bag, const char *name, const char *help) 926d71ae5a4SJacob Faibussowitsch { 9275c6c1daeSBarry Smith PetscFunctionBegin; 9284f572ea9SToby Isaac PetscAssertPointer(bag, 1); 9294f572ea9SToby Isaac PetscAssertPointer(name, 2); 9304f572ea9SToby Isaac PetscAssertPointer(help, 3); 9319566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(bag->bagname, name, PETSC_BAG_NAME_LENGTH - 1)); 9329566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(bag->baghelp, help, PETSC_BAG_HELP_LENGTH - 1)); 9333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9345c6c1daeSBarry Smith } 9355c6c1daeSBarry Smith 9365c6c1daeSBarry Smith /*@C 9375c6c1daeSBarry Smith PetscBagGetName - Gets the name of a bag of values 9385c6c1daeSBarry Smith 9395c6c1daeSBarry Smith Not Collective 9405c6c1daeSBarry Smith 941aec76313SJacob Faibussowitsch Level: intermediate 9425c6c1daeSBarry Smith 9435c6c1daeSBarry Smith Input Parameter: 9445c6c1daeSBarry Smith . bag - the bag of values 9455c6c1daeSBarry Smith 9465c6c1daeSBarry Smith Output Parameter: 9475c6c1daeSBarry Smith . name - the name assigned to the bag 9485c6c1daeSBarry Smith 949db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()`, `PetscBagGetData()` 950db781477SPatrick Sanan `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 951db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagDestroy()`, `PetscBagRegisterEnum()` 9525c6c1daeSBarry Smith @*/ 953d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagGetName(PetscBag bag, char **name) 954d71ae5a4SJacob Faibussowitsch { 9555c6c1daeSBarry Smith PetscFunctionBegin; 9564f572ea9SToby Isaac PetscAssertPointer(bag, 1); 9574f572ea9SToby Isaac PetscAssertPointer(name, 2); 9585c6c1daeSBarry Smith *name = bag->bagname; 9593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9605c6c1daeSBarry Smith } 9615c6c1daeSBarry Smith 9625c6c1daeSBarry Smith /*@C 9635c6c1daeSBarry Smith PetscBagGetData - Gives back the user - access to memory that 964811af0c4SBarry Smith can be used for storing user-data-structure 9655c6c1daeSBarry Smith 9665c6c1daeSBarry Smith Not Collective 9675c6c1daeSBarry Smith 9685c6c1daeSBarry Smith Input Parameter: 9695c6c1daeSBarry Smith . bag - the bag of values 9705c6c1daeSBarry Smith 9715c6c1daeSBarry Smith Output Parameter: 97209cbc92aSBarry Smith . data - pointer to memory that will have user-data-structure, this can be cast to a pointer of the type the C struct used in 97309cbc92aSBarry Smith defining the bag 97409cbc92aSBarry Smith 975aec76313SJacob Faibussowitsch Level: intermediate 9765c6c1daeSBarry Smith 977db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagSetName()`, `PetscBagView()`, `PetscBagLoad()` 978db781477SPatrick Sanan `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 979db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagDestroy()`, `PetscBagRegisterEnum()` 9805c6c1daeSBarry Smith @*/ 981d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagGetData(PetscBag bag, void **data) 982d71ae5a4SJacob Faibussowitsch { 9835c6c1daeSBarry Smith PetscFunctionBegin; 9844f572ea9SToby Isaac PetscAssertPointer(bag, 1); 9854f572ea9SToby Isaac PetscAssertPointer(data, 2); 9865c6c1daeSBarry Smith *data = bag->structlocation; 9873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9885c6c1daeSBarry Smith } 9895c6c1daeSBarry Smith 9905c6c1daeSBarry Smith /*@C 9915c6c1daeSBarry Smith PetscBagSetOptionsPrefix - Sets the prefix used for searching for all 992811af0c4SBarry Smith `PetscBag` items in the options database. 9935c6c1daeSBarry Smith 99409cbc92aSBarry Smith Logically Collective 9955c6c1daeSBarry Smith 996aec76313SJacob Faibussowitsch Level: intermediate 9975c6c1daeSBarry Smith 9985c6c1daeSBarry Smith Input Parameters: 9995c6c1daeSBarry Smith + bag - the bag of values 1000aec76313SJacob Faibussowitsch - pre - the prefix to prepend all Bag item names with. 10015c6c1daeSBarry Smith 100209cbc92aSBarry Smith Note: 100309cbc92aSBarry Smith Must be called prior to registering any of the bag items. 10045c6c1daeSBarry Smith 1005db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()` 1006db781477SPatrick Sanan `PetscBagSetFromOptions()`, `PetscBagCreate()`, `PetscBagDestroy()`, `PetscBagRegisterEnum()` 10075c6c1daeSBarry Smith @*/ 1008d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagSetOptionsPrefix(PetscBag bag, const char pre[]) 1009d71ae5a4SJacob Faibussowitsch { 10105c6c1daeSBarry Smith PetscFunctionBegin; 10114f572ea9SToby Isaac PetscAssertPointer(bag, 1); 10125f80ce2aSJacob Faibussowitsch if (pre) { 10134f572ea9SToby Isaac PetscAssertPointer(pre, 2); 10145f80ce2aSJacob Faibussowitsch PetscCheck(pre[0] != '-', PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Options prefix should not begin with a hyphen"); 10159566063dSJacob Faibussowitsch PetscCall(PetscFree(bag->bagprefix)); 1016*f4f49eeaSPierre Jolivet PetscCall(PetscStrallocpy(pre, &bag->bagprefix)); 10179566063dSJacob Faibussowitsch } else PetscCall(PetscFree(bag->bagprefix)); 10183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10195c6c1daeSBarry Smith } 1020ffb7e86cSMatthew G. Knepley 1021ffb7e86cSMatthew G. Knepley /*@C 1022ffb7e86cSMatthew G. Knepley PetscBagGetNames - Get the names of all entries in the bag 1023ffb7e86cSMatthew G. Knepley 102409cbc92aSBarry Smith Not Collective 1025ffb7e86cSMatthew G. Knepley 10262fe279fdSBarry Smith Input Parameter: 10272fe279fdSBarry Smith . bag - the bag of values 1028ffb7e86cSMatthew G. Knepley 1029ffb7e86cSMatthew G. Knepley Output Parameter: 1030ffb7e86cSMatthew G. Knepley . names - array of char pointers for names 1031ffb7e86cSMatthew G. Knepley 1032ffb7e86cSMatthew G. Knepley Level: intermediate 1033ffb7e86cSMatthew G. Knepley 1034db781477SPatrick Sanan .seealso: `PetscBag`, `PetscBagGetName()`, `PetscBagSetName()`, `PetscBagCreate()`, `PetscBagGetData()` 1035db781477SPatrick Sanan `PetscBagRegisterReal()`, `PetscBagRegisterInt()`, `PetscBagRegisterBool()`, `PetscBagRegisterScalar()`, `PetscBagRegisterEnum()` 1036ffb7e86cSMatthew G. Knepley @*/ 1037d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscBagGetNames(PetscBag bag, const char *names[]) 1038d71ae5a4SJacob Faibussowitsch { 1039ffb7e86cSMatthew G. Knepley PetscBagItem nitem = bag->bagitems; 1040ffb7e86cSMatthew G. Knepley 1041ffb7e86cSMatthew G. Knepley PetscFunctionBegin; 10424f572ea9SToby Isaac PetscAssertPointer(bag, 1); 10434f572ea9SToby Isaac PetscAssertPointer(names, 2); 10445f80ce2aSJacob Faibussowitsch for (PetscInt n = 0; nitem; ++n, nitem = nitem->next) names[n] = nitem->name; 10453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1046ffb7e86cSMatthew G. Knepley } 1047