xref: /petsc/src/sys/classes/viewer/impls/binary/binv.c (revision 22a8f86c5e481f60ff98917e6874298d26cbcd3b)
15c6c1daeSBarry Smith 
2af0996ceSBarry Smith #include <petsc/private/viewerimpl.h>    /*I   "petscviewer.h"   I*/
35c6c1daeSBarry Smith #include <fcntl.h>
45c6c1daeSBarry Smith #if defined(PETSC_HAVE_UNISTD_H)
55c6c1daeSBarry Smith #include <unistd.h>
65c6c1daeSBarry Smith #endif
75c6c1daeSBarry Smith #if defined(PETSC_HAVE_IO_H)
85c6c1daeSBarry Smith #include <io.h>
95c6c1daeSBarry Smith #endif
105c6c1daeSBarry Smith 
115c6c1daeSBarry Smith typedef struct  {
125c6c1daeSBarry Smith   int           fdes;                 /* file descriptor, ignored if using MPI IO */
135c6c1daeSBarry Smith #if defined(PETSC_HAVE_MPIIO)
14bc196f7cSDave May   PetscBool     usempiio;
155c6c1daeSBarry Smith   MPI_File      mfdes;                /* ignored unless using MPI IO */
16e8a65b7dSLisandro Dalcin   MPI_File      mfsub;                /* subviewer support */
175c6c1daeSBarry Smith   MPI_Offset    moff;
185c6c1daeSBarry Smith #endif
195c6c1daeSBarry Smith   PetscFileMode btype;                /* read or write? */
205c6c1daeSBarry Smith   FILE          *fdes_info;           /* optional file containing info on binary file*/
215c6c1daeSBarry Smith   PetscBool     storecompressed;      /* gzip the write binary file when closing it*/
225c6c1daeSBarry Smith   char          *filename;
23f90597f1SStefano Zampini   char          *ogzfilename;         /* gzip can be run after the filename has been updated */
245c6c1daeSBarry Smith   PetscBool     skipinfo;             /* Don't create info file for writing; don't use for reading */
255c6c1daeSBarry Smith   PetscBool     skipoptions;          /* don't use PETSc options database when loading */
265c6c1daeSBarry Smith   PetscInt      flowcontrol;          /* allow only <flowcontrol> messages outstanding at a time while doing IO */
275c6c1daeSBarry Smith   PetscBool     skipheader;           /* don't write header, only raw data */
28a261c58fSBarry Smith   PetscBool     matlabheaderwritten;  /* if format is PETSC_VIEWER_BINARY_MATLAB has the MATLAB .info header been written yet */
29c98fd787SBarry Smith   PetscBool     setfromoptionscalled;
305c6c1daeSBarry Smith } PetscViewer_Binary;
315c6c1daeSBarry Smith 
3281f0254dSBarry Smith static PetscErrorCode PetscViewerGetSubViewer_Binary(PetscViewer viewer,MPI_Comm comm,PetscViewer *outviewer)
335c6c1daeSBarry Smith {
345c6c1daeSBarry Smith   int                rank;
355c6c1daeSBarry Smith   PetscErrorCode     ierr;
36e8a65b7dSLisandro Dalcin   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;
375c6c1daeSBarry Smith 
385c6c1daeSBarry Smith   PetscFunctionBegin;
39c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
40e8a65b7dSLisandro Dalcin 
41e8a65b7dSLisandro Dalcin   /* Return subviewer in process zero */
42ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)viewer),&rank);CHKERRQ(ierr);
435c6c1daeSBarry Smith   if (!rank) {
44e5afcf28SBarry Smith     PetscMPIInt flg;
45e5afcf28SBarry Smith 
46e5afcf28SBarry Smith     ierr = MPI_Comm_compare(PETSC_COMM_SELF,comm,&flg);CHKERRQ(ierr);
47e5afcf28SBarry Smith     if (flg != MPI_IDENT && flg != MPI_CONGRUENT) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"PetscViewerGetSubViewer() for PETSCVIEWERBINARY requires a singleton MPI_Comm");
48e5afcf28SBarry Smith     ierr = PetscViewerCreate(comm,outviewer);CHKERRQ(ierr);
495c6c1daeSBarry Smith     ierr = PetscViewerSetType(*outviewer,PETSCVIEWERBINARY);CHKERRQ(ierr);
50e8a65b7dSLisandro Dalcin     ierr = PetscMemcpy((*outviewer)->data,vbinary,sizeof(PetscViewer_Binary));CHKERRQ(ierr);
5112f4c3a9SLisandro Dalcin     (*outviewer)->setupcalled = PETSC_TRUE;
5296509d17SLisandro Dalcin   } else {
5396509d17SLisandro Dalcin     *outviewer = NULL;
5496509d17SLisandro Dalcin   }
55e8a65b7dSLisandro Dalcin 
56e8a65b7dSLisandro Dalcin #if defined(PETSC_HAVE_MPIIO)
57e8a65b7dSLisandro Dalcin   if (vbinary->usempiio && *outviewer) {
58e8a65b7dSLisandro Dalcin     PetscViewer_Binary *obinary = (PetscViewer_Binary*)(*outviewer)->data;
59e8a65b7dSLisandro Dalcin     /* Parent viewer opens a new MPI file handle on PETSC_COMM_SELF and keeps track of it for future reuse */
60e8a65b7dSLisandro Dalcin     if (vbinary->mfsub == MPI_FILE_NULL) {
61e8a65b7dSLisandro Dalcin       int amode;
62e8a65b7dSLisandro Dalcin       switch (vbinary->btype) {
63e8a65b7dSLisandro Dalcin       case FILE_MODE_READ:   amode = MPI_MODE_RDONLY; break;
64e8a65b7dSLisandro Dalcin       case FILE_MODE_WRITE:  amode = MPI_MODE_WRONLY; break;
65*22a8f86cSLisandro Dalcin       case FILE_MODE_APPEND: amode = MPI_MODE_WRONLY; break;
66e8a65b7dSLisandro Dalcin       default: SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Unsupported file mode %s",PetscFileModes[vbinary->btype]);
67e8a65b7dSLisandro Dalcin       }
68e8a65b7dSLisandro Dalcin       ierr = MPI_File_open(PETSC_COMM_SELF,vbinary->filename,amode,MPI_INFO_NULL,&vbinary->mfsub);CHKERRQ(ierr);
69e8a65b7dSLisandro Dalcin     }
70e8a65b7dSLisandro Dalcin     /* Subviewer gets the MPI file handle on PETSC_COMM_SELF */
71e8a65b7dSLisandro Dalcin     obinary->mfdes = vbinary->mfsub;
72e8a65b7dSLisandro Dalcin     obinary->mfsub = MPI_FILE_NULL;
73e8a65b7dSLisandro Dalcin     obinary->moff  = vbinary->moff;
74e8a65b7dSLisandro Dalcin   }
75e8a65b7dSLisandro Dalcin #endif
765c6c1daeSBarry Smith   PetscFunctionReturn(0);
775c6c1daeSBarry Smith }
785c6c1daeSBarry Smith 
7981f0254dSBarry Smith static PetscErrorCode PetscViewerRestoreSubViewer_Binary(PetscViewer viewer,MPI_Comm comm,PetscViewer *outviewer)
805c6c1daeSBarry Smith {
81e5afcf28SBarry Smith   PetscMPIInt        rank;
82e8a65b7dSLisandro Dalcin   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;
83e8a65b7dSLisandro Dalcin   PetscErrorCode     ierr;
84e8a65b7dSLisandro Dalcin #if defined(PETSC_HAVE_MPIIO)
85e8a65b7dSLisandro Dalcin   MPI_Offset         moff = 0;
86e8a65b7dSLisandro Dalcin #endif
875c6c1daeSBarry Smith 
885c6c1daeSBarry Smith   PetscFunctionBegin;
89ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)viewer),&rank);CHKERRQ(ierr);
90e8a65b7dSLisandro Dalcin   if (rank && *outviewer) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Subviewer not obtained from viewer");
91e8a65b7dSLisandro Dalcin 
92e8a65b7dSLisandro Dalcin #if defined(PETSC_HAVE_MPIIO)
93e8a65b7dSLisandro Dalcin   if (vbinary->usempiio && *outviewer) {
94e8a65b7dSLisandro Dalcin     PetscViewer_Binary *obinary = (PetscViewer_Binary*)(*outviewer)->data;
95e8a65b7dSLisandro Dalcin     if (obinary->mfdes != vbinary->mfsub) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Subviewer not obtained from viewer");
96e8a65b7dSLisandro Dalcin     moff = obinary->moff;
97e8a65b7dSLisandro Dalcin   }
98e8a65b7dSLisandro Dalcin #endif
99e8a65b7dSLisandro Dalcin 
100e8a65b7dSLisandro Dalcin   if (*outviewer) {
101e8a65b7dSLisandro Dalcin     PetscViewer_Binary *obinary = (PetscViewer_Binary*)(*outviewer)->data;
102e8a65b7dSLisandro Dalcin     if (obinary->fdes != vbinary->fdes) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Subviewer not obtained from viewer");
1035c6c1daeSBarry Smith     ierr = PetscFree((*outviewer)->data);CHKERRQ(ierr);
1045c6c1daeSBarry Smith     ierr = PetscHeaderDestroy(outviewer);CHKERRQ(ierr);
1055c6c1daeSBarry Smith   }
106e8a65b7dSLisandro Dalcin 
107e8a65b7dSLisandro Dalcin #if defined(PETSC_HAVE_MPIIO)
108e8a65b7dSLisandro Dalcin   if (vbinary->usempiio) {
109e8a65b7dSLisandro Dalcin     PetscInt64 ioff = (PetscInt64)moff; /* We could use MPI_OFFSET datatype (requires MPI 2.2) */
110e8a65b7dSLisandro Dalcin     ierr = MPI_Bcast(&ioff,1,MPIU_INT64,0,PetscObjectComm((PetscObject)viewer));CHKERRQ(ierr);
111e8a65b7dSLisandro Dalcin     vbinary->moff = (MPI_Offset)ioff;
112e8a65b7dSLisandro Dalcin   }
113e8a65b7dSLisandro Dalcin #endif
1145c6c1daeSBarry Smith   PetscFunctionReturn(0);
1155c6c1daeSBarry Smith }
1165c6c1daeSBarry Smith 
1175c6c1daeSBarry Smith #if defined(PETSC_HAVE_MPIIO)
1185c6c1daeSBarry Smith /*@C
119*22a8f86cSLisandro Dalcin     PetscViewerBinaryGetMPIIOOffset - Gets the current global offset that should be passed to MPI_File_set_view() or MPI_File_{write|read}_at[_all]()
1205c6c1daeSBarry Smith 
1215c6c1daeSBarry Smith     Not Collective
1225c6c1daeSBarry Smith 
1235c6c1daeSBarry Smith     Input Parameter:
1245c6c1daeSBarry Smith .   viewer - PetscViewer context, obtained from PetscViewerBinaryOpen()
1255c6c1daeSBarry Smith 
1265c6c1daeSBarry Smith     Output Parameter:
127*22a8f86cSLisandro Dalcin .   off - the current global offset
1285c6c1daeSBarry Smith 
1295c6c1daeSBarry Smith     Level: advanced
1305c6c1daeSBarry Smith 
1315c6c1daeSBarry Smith     Fortran Note:
1325c6c1daeSBarry Smith     This routine is not supported in Fortran.
1335c6c1daeSBarry Smith 
1345c6c1daeSBarry Smith     Use PetscViewerBinaryAddMPIIOOffset() to increase this value after you have written a view.
1355c6c1daeSBarry Smith 
1365c6c1daeSBarry Smith 
13767918a83SBarry Smith .seealso: PetscViewerBinaryOpen(), PetscViewerBinaryGetInfoPointer(), PetscViewerBinaryGetUseMPIIO(), PetscViewerBinarySetUseMPIIO(), PetscViewerBinaryAddMPIIOOffset()
1385c6c1daeSBarry Smith @*/
1395c6c1daeSBarry Smith PetscErrorCode PetscViewerBinaryGetMPIIOOffset(PetscViewer viewer,MPI_Offset *off)
1405c6c1daeSBarry Smith {
141*22a8f86cSLisandro Dalcin   PetscViewer_Binary *vbinary;
1425c6c1daeSBarry Smith 
1435c6c1daeSBarry Smith   PetscFunctionBegin;
144*22a8f86cSLisandro Dalcin   PetscValidHeaderSpecificType(viewer,PETSC_VIEWER_CLASSID,1,PETSCVIEWERBINARY);
145*22a8f86cSLisandro Dalcin   PetscValidPointer(off,2);
146*22a8f86cSLisandro Dalcin   vbinary = (PetscViewer_Binary*)viewer->data;
1475c6c1daeSBarry Smith   *off = vbinary->moff;
1485c6c1daeSBarry Smith   PetscFunctionReturn(0);
1495c6c1daeSBarry Smith }
1505c6c1daeSBarry Smith 
1515c6c1daeSBarry Smith /*@C
152*22a8f86cSLisandro Dalcin     PetscViewerBinaryAddMPIIOOffset - Adds to the current global offset
1535c6c1daeSBarry Smith 
154*22a8f86cSLisandro Dalcin     Logically Collective
1555c6c1daeSBarry Smith 
1565c6c1daeSBarry Smith     Input Parameters:
1575c6c1daeSBarry Smith +   viewer - PetscViewer context, obtained from PetscViewerBinaryOpen()
158*22a8f86cSLisandro Dalcin -   off - the addition to the global offset
1595c6c1daeSBarry Smith 
1605c6c1daeSBarry Smith     Level: advanced
1615c6c1daeSBarry Smith 
1625c6c1daeSBarry Smith     Fortran Note:
1635c6c1daeSBarry Smith     This routine is not supported in Fortran.
1645c6c1daeSBarry Smith 
165*22a8f86cSLisandro Dalcin     Use PetscViewerBinaryGetMPIIOOffset() to get the value that you should pass to MPI_File_set_view() or MPI_File_{write|read}_at[_all]()
1665c6c1daeSBarry Smith 
1675c6c1daeSBarry Smith 
16867918a83SBarry Smith .seealso: PetscViewerBinaryOpen(),PetscViewerBinaryGetInfoPointer(), PetscViewerBinaryGetUseMPIIO(), PetscViewerBinarySetUseMPIIO(), PetscViewerBinaryGetMPIIOOffset()
1695c6c1daeSBarry Smith @*/
1705c6c1daeSBarry Smith PetscErrorCode PetscViewerBinaryAddMPIIOOffset(PetscViewer viewer,MPI_Offset off)
1715c6c1daeSBarry Smith {
172*22a8f86cSLisandro Dalcin   PetscViewer_Binary *vbinary;
1735c6c1daeSBarry Smith 
1745c6c1daeSBarry Smith   PetscFunctionBegin;
175*22a8f86cSLisandro Dalcin   PetscValidHeaderSpecificType(viewer,PETSC_VIEWER_CLASSID,1,PETSCVIEWERBINARY);
176*22a8f86cSLisandro Dalcin   PetscValidLogicalCollectiveInt(viewer,(PetscInt)off,2);
177*22a8f86cSLisandro Dalcin   vbinary = (PetscViewer_Binary*)viewer->data;
1785c6c1daeSBarry Smith   vbinary->moff += off;
1795c6c1daeSBarry Smith   PetscFunctionReturn(0);
1805c6c1daeSBarry Smith }
1815c6c1daeSBarry Smith 
1825c6c1daeSBarry Smith /*@C
1835c6c1daeSBarry Smith     PetscViewerBinaryGetMPIIODescriptor - Extracts the MPI IO file descriptor from a PetscViewer.
1845c6c1daeSBarry Smith 
1855c6c1daeSBarry Smith     Not Collective
1865c6c1daeSBarry Smith 
1875c6c1daeSBarry Smith     Input Parameter:
1885c6c1daeSBarry Smith .   viewer - PetscViewer context, obtained from PetscViewerBinaryOpen()
1895c6c1daeSBarry Smith 
1905c6c1daeSBarry Smith     Output Parameter:
1915c6c1daeSBarry Smith .   fdes - file descriptor
1925c6c1daeSBarry Smith 
1935c6c1daeSBarry Smith     Level: advanced
1945c6c1daeSBarry Smith 
1955c6c1daeSBarry Smith     Fortran Note:
1965c6c1daeSBarry Smith     This routine is not supported in Fortran.
1975c6c1daeSBarry Smith 
1985c6c1daeSBarry Smith 
19967918a83SBarry Smith .seealso: PetscViewerBinaryOpen(),PetscViewerBinaryGetInfoPointer(), PetscViewerBinaryGetUseMPIIO(), PetscViewerBinarySetUseMPIIO(), PetscViewerBinaryGetMPIIOOffset()
2005c6c1daeSBarry Smith @*/
2015c6c1daeSBarry Smith PetscErrorCode PetscViewerBinaryGetMPIIODescriptor(PetscViewer viewer,MPI_File *fdes)
2025c6c1daeSBarry Smith {
20303a1d59fSDave May   PetscErrorCode     ierr;
204*22a8f86cSLisandro Dalcin   PetscViewer_Binary *vbinary;
2055c6c1daeSBarry Smith 
2065c6c1daeSBarry Smith   PetscFunctionBegin;
207*22a8f86cSLisandro Dalcin   PetscValidHeaderSpecificType(viewer,PETSC_VIEWER_CLASSID,1,PETSCVIEWERBINARY);
208*22a8f86cSLisandro Dalcin   PetscValidPointer(fdes,2);
209c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
210*22a8f86cSLisandro Dalcin   vbinary = (PetscViewer_Binary*)viewer->data;
2115c6c1daeSBarry Smith   *fdes = vbinary->mfdes;
2125c6c1daeSBarry Smith   PetscFunctionReturn(0);
2135c6c1daeSBarry Smith }
2145c6c1daeSBarry Smith 
21581f0254dSBarry Smith static PetscErrorCode PetscViewerBinaryGetUseMPIIO_Binary(PetscViewer viewer,PetscBool  *flg)
216a8aae444SDave May {
217a8aae444SDave May   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;
218a8aae444SDave May 
219a8aae444SDave May   PetscFunctionBegin;
220bc196f7cSDave May   *flg = vbinary->usempiio;
221a8aae444SDave May   PetscFunctionReturn(0);
222a8aae444SDave May }
223a8aae444SDave May #endif
224a8aae444SDave May 
225a8aae444SDave May 
2265c6c1daeSBarry Smith /*@C
227bc196f7cSDave May     PetscViewerBinaryGetUseMPIIO - Returns PETSC_TRUE if the binary viewer uses MPI-IO.
2285c6c1daeSBarry Smith 
2295c6c1daeSBarry Smith     Not Collective
2305c6c1daeSBarry Smith 
2315c6c1daeSBarry Smith     Input Parameter:
2325c6c1daeSBarry Smith .   viewer - PetscViewer context, obtained from PetscViewerBinaryOpen()
2335c6c1daeSBarry Smith 
2345c6c1daeSBarry Smith     Output Parameter:
235bc196f7cSDave May -   flg - PETSC_TRUE if MPI-IO is being used
2365c6c1daeSBarry Smith 
2375c6c1daeSBarry Smith     Options Database:
2385c6c1daeSBarry Smith     -viewer_binary_mpiio : Flag for using MPI-IO
2395c6c1daeSBarry Smith 
2405c6c1daeSBarry Smith     Level: advanced
2415c6c1daeSBarry Smith 
242bc196f7cSDave May     Note:
243bc196f7cSDave May     If MPI-IO is not available, this function will always return PETSC_FALSE
244bc196f7cSDave May 
2455c6c1daeSBarry Smith     Fortran Note:
2465c6c1daeSBarry Smith     This routine is not supported in Fortran.
2475c6c1daeSBarry Smith 
2485c6c1daeSBarry Smith 
24967918a83SBarry Smith .seealso: PetscViewerBinaryOpen(), PetscViewerBinaryGetInfoPointer(), PetscViewerBinarySetUseMPIIO(), PetscViewerBinaryGetMPIIOOffset()
2505c6c1daeSBarry Smith @*/
251bc196f7cSDave May PetscErrorCode PetscViewerBinaryGetUseMPIIO(PetscViewer viewer,PetscBool *flg)
2525c6c1daeSBarry Smith {
253a8aae444SDave May   PetscErrorCode ierr;
2545c6c1daeSBarry Smith 
2555c6c1daeSBarry Smith   PetscFunctionBegin;
256a8aae444SDave May   *flg = PETSC_FALSE;
257bc196f7cSDave May   ierr = PetscTryMethod(viewer,"PetscViewerBinaryGetUseMPIIO_C",(PetscViewer,PetscBool*),(viewer,flg));CHKERRQ(ierr);
2585c6c1daeSBarry Smith   PetscFunctionReturn(0);
2595c6c1daeSBarry Smith }
2605c6c1daeSBarry Smith 
26181f0254dSBarry Smith static PetscErrorCode  PetscViewerBinaryGetFlowControl_Binary(PetscViewer viewer,PetscInt *fc)
2625c6c1daeSBarry Smith {
2635c6c1daeSBarry Smith   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;
2645c6c1daeSBarry Smith 
2655c6c1daeSBarry Smith   PetscFunctionBegin;
2665c6c1daeSBarry Smith   *fc = vbinary->flowcontrol;
2675c6c1daeSBarry Smith   PetscFunctionReturn(0);
2685c6c1daeSBarry Smith }
2695c6c1daeSBarry Smith 
2705c6c1daeSBarry Smith /*@C
2715c6c1daeSBarry Smith     PetscViewerBinaryGetFlowControl - Returns how many messages are allowed to outstanding at the same time during parallel IO reads/writes
2725c6c1daeSBarry Smith 
2735c6c1daeSBarry Smith     Not Collective
2745c6c1daeSBarry Smith 
2755c6c1daeSBarry Smith     Input Parameter:
2765c6c1daeSBarry Smith .   viewer - PetscViewer context, obtained from PetscViewerBinaryOpen()
2775c6c1daeSBarry Smith 
2785c6c1daeSBarry Smith     Output Parameter:
2795c6c1daeSBarry Smith .   fc - the number of messages
2805c6c1daeSBarry Smith 
2815c6c1daeSBarry Smith     Level: advanced
2825c6c1daeSBarry Smith 
2835c6c1daeSBarry Smith .seealso: PetscViewerBinaryOpen(),PetscViewerBinaryGetInfoPointer(), PetscViewerBinarySetFlowControl()
2845c6c1daeSBarry Smith 
2855c6c1daeSBarry Smith @*/
2865c6c1daeSBarry Smith PetscErrorCode PetscViewerBinaryGetFlowControl(PetscViewer viewer,PetscInt *fc)
2875c6c1daeSBarry Smith {
2885c6c1daeSBarry Smith   PetscErrorCode ierr;
2895c6c1daeSBarry Smith 
2905c6c1daeSBarry Smith   PetscFunctionBegin;
291163d334eSBarry Smith   ierr = PetscUseMethod(viewer,"PetscViewerBinaryGetFlowControl_C",(PetscViewer,PetscInt*),(viewer,fc));CHKERRQ(ierr);
2925c6c1daeSBarry Smith   PetscFunctionReturn(0);
2935c6c1daeSBarry Smith }
2945c6c1daeSBarry Smith 
29581f0254dSBarry Smith static PetscErrorCode PetscViewerBinarySetFlowControl_Binary(PetscViewer viewer,PetscInt fc)
2965c6c1daeSBarry Smith {
2975c6c1daeSBarry Smith   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;
2985c6c1daeSBarry Smith 
2995c6c1daeSBarry Smith   PetscFunctionBegin;
300ce94432eSBarry Smith   if (fc <= 1) SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_ARG_OUTOFRANGE,"Flow control count must be greater than 1, %D was set",fc);
3015c6c1daeSBarry Smith   vbinary->flowcontrol = fc;
3025c6c1daeSBarry Smith   PetscFunctionReturn(0);
3035c6c1daeSBarry Smith }
3045c6c1daeSBarry Smith 
3055c6c1daeSBarry Smith /*@C
306639ff905SBarry Smith     PetscViewerBinarySetFlowControl - Sets how many messages are allowed to outstanding at the same time during parallel IO reads/writes
3075c6c1daeSBarry Smith 
3085c6c1daeSBarry Smith     Not Collective
3095c6c1daeSBarry Smith 
3105c6c1daeSBarry Smith     Input Parameter:
3115c6c1daeSBarry Smith +   viewer - PetscViewer context, obtained from PetscViewerBinaryOpen()
312639ff905SBarry Smith -   fc - the number of messages, defaults to 256 if this function was not called
3135c6c1daeSBarry Smith 
3145c6c1daeSBarry Smith     Level: advanced
3155c6c1daeSBarry Smith 
3165c6c1daeSBarry Smith .seealso: PetscViewerBinaryOpen(),PetscViewerBinaryGetInfoPointer(), PetscViewerBinaryGetFlowControl()
3175c6c1daeSBarry Smith 
3185c6c1daeSBarry Smith @*/
3195c6c1daeSBarry Smith PetscErrorCode  PetscViewerBinarySetFlowControl(PetscViewer viewer,PetscInt fc)
3205c6c1daeSBarry Smith {
3215c6c1daeSBarry Smith   PetscErrorCode ierr;
3225c6c1daeSBarry Smith 
3235c6c1daeSBarry Smith   PetscFunctionBegin;
3245c6c1daeSBarry Smith   ierr = PetscUseMethod(viewer,"PetscViewerBinarySetFlowControl_C",(PetscViewer,PetscInt),(viewer,fc));CHKERRQ(ierr);
3255c6c1daeSBarry Smith   PetscFunctionReturn(0);
3265c6c1daeSBarry Smith }
3275c6c1daeSBarry Smith 
3285c6c1daeSBarry Smith /*@C
3295c6c1daeSBarry Smith     PetscViewerBinaryGetDescriptor - Extracts the file descriptor from a PetscViewer.
3305c6c1daeSBarry Smith 
3315872f025SBarry Smith     Collective On PetscViewer
3325c6c1daeSBarry Smith 
3335c6c1daeSBarry Smith     Input Parameter:
3345c6c1daeSBarry Smith .   viewer - PetscViewer context, obtained from PetscViewerBinaryOpen()
3355c6c1daeSBarry Smith 
3365c6c1daeSBarry Smith     Output Parameter:
3375c6c1daeSBarry Smith .   fdes - file descriptor
3385c6c1daeSBarry Smith 
3395c6c1daeSBarry Smith     Level: advanced
3405c6c1daeSBarry Smith 
3415c6c1daeSBarry Smith     Notes:
3425c6c1daeSBarry Smith       For writable binary PetscViewers, the descriptor will only be valid for the
3435c6c1daeSBarry Smith     first processor in the communicator that shares the PetscViewer. For readable
3445c6c1daeSBarry Smith     files it will only be valid on nodes that have the file. If node 0 does not
3455c6c1daeSBarry Smith     have the file it generates an error even if another node does have the file.
3465c6c1daeSBarry Smith 
3475c6c1daeSBarry Smith     Fortran Note:
3485c6c1daeSBarry Smith     This routine is not supported in Fortran.
3495c6c1daeSBarry Smith 
35095452b02SPatrick Sanan     Developer Notes:
35195452b02SPatrick Sanan     This must be called on all processes because Dave May changed
3525872f025SBarry Smith     the source code that this may be trigger a PetscViewerSetUp() call if it was not previously triggered.
3535872f025SBarry Smith 
3545872f025SBarry Smith 
3555c6c1daeSBarry Smith 
3565c6c1daeSBarry Smith .seealso: PetscViewerBinaryOpen(),PetscViewerBinaryGetInfoPointer()
3575c6c1daeSBarry Smith @*/
3585c6c1daeSBarry Smith PetscErrorCode PetscViewerBinaryGetDescriptor(PetscViewer viewer,int *fdes)
3595c6c1daeSBarry Smith {
36003a1d59fSDave May   PetscErrorCode     ierr;
361*22a8f86cSLisandro Dalcin   PetscViewer_Binary *vbinary;
3625c6c1daeSBarry Smith 
3635c6c1daeSBarry Smith   PetscFunctionBegin;
364*22a8f86cSLisandro Dalcin   PetscValidHeaderSpecificType(viewer,PETSC_VIEWER_CLASSID,1,PETSCVIEWERBINARY);
365*22a8f86cSLisandro Dalcin   PetscValidPointer(fdes,2);
366c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
367*22a8f86cSLisandro Dalcin   vbinary = (PetscViewer_Binary*)viewer->data;
3685c6c1daeSBarry Smith   *fdes = vbinary->fdes;
3695c6c1daeSBarry Smith   PetscFunctionReturn(0);
3705c6c1daeSBarry Smith }
3715c6c1daeSBarry Smith 
3725c6c1daeSBarry Smith /*@
3735c6c1daeSBarry Smith     PetscViewerBinarySkipInfo - Binary file will not have .info file created with it
3745c6c1daeSBarry Smith 
3755c6c1daeSBarry Smith     Not Collective
3765c6c1daeSBarry Smith 
377fd292e60Sprj-     Input Parameter:
3785c6c1daeSBarry Smith .   viewer - PetscViewer context, obtained from PetscViewerCreate()
3795c6c1daeSBarry Smith 
3805c6c1daeSBarry Smith     Options Database Key:
3815c6c1daeSBarry Smith .   -viewer_binary_skip_info
3825c6c1daeSBarry Smith 
3835c6c1daeSBarry Smith     Level: advanced
3845c6c1daeSBarry Smith 
38595452b02SPatrick Sanan     Notes:
38695452b02SPatrick Sanan     This must be called after PetscViewerSetType(). If you use PetscViewerBinaryOpen() then
3875c6c1daeSBarry Smith     you can only skip the info file with the -viewer_binary_skip_info flag. To use the function you must open the
388a2d7db39SDave May     viewer with PetscViewerCreate(), PetscViewerSetType(), PetscViewerBinarySkipInfo().
3895c6c1daeSBarry Smith 
3905c6c1daeSBarry Smith     The .info contains meta information about the data in the binary file, for example the block size if it was
3915c6c1daeSBarry Smith     set for a vector or matrix.
3925c6c1daeSBarry Smith 
3935c6c1daeSBarry Smith .seealso: PetscViewerBinaryOpen(), PetscViewerBinaryGetDescriptor(), PetscViewerBinarySetSkipOptions(),
394807ea322SDave May           PetscViewerBinaryGetSkipOptions(), PetscViewerBinaryGetSkipInfo()
3955c6c1daeSBarry Smith @*/
3965c6c1daeSBarry Smith PetscErrorCode PetscViewerBinarySkipInfo(PetscViewer viewer)
3975c6c1daeSBarry Smith {
398*22a8f86cSLisandro Dalcin   PetscViewer_Binary *vbinary;
3995c6c1daeSBarry Smith 
4005c6c1daeSBarry Smith   PetscFunctionBegin;
401*22a8f86cSLisandro Dalcin   PetscValidHeaderSpecificType(viewer,PETSC_VIEWER_CLASSID,1,PETSCVIEWERBINARY);
402*22a8f86cSLisandro Dalcin   vbinary = (PetscViewer_Binary*)viewer->data;
4035c6c1daeSBarry Smith   vbinary->skipinfo = PETSC_TRUE;
4045c6c1daeSBarry Smith   PetscFunctionReturn(0);
4055c6c1daeSBarry Smith }
4065c6c1daeSBarry Smith 
40781f0254dSBarry Smith static PetscErrorCode PetscViewerBinarySetSkipInfo_Binary(PetscViewer viewer,PetscBool skip)
408807ea322SDave May {
409807ea322SDave May   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;
410807ea322SDave May 
411807ea322SDave May   PetscFunctionBegin;
412807ea322SDave May   vbinary->skipinfo = skip;
413807ea322SDave May   PetscFunctionReturn(0);
414807ea322SDave May }
415807ea322SDave May 
416807ea322SDave May /*@
417807ea322SDave May     PetscViewerBinarySetSkipInfo - Binary file will not have .info file created with it
418807ea322SDave May 
419807ea322SDave May     Not Collective
420807ea322SDave May 
421fd292e60Sprj-     Input Parameter:
422807ea322SDave May .   viewer - PetscViewer context, obtained from PetscViewerCreate()
423807ea322SDave May 
424807ea322SDave May     Options Database Key:
425807ea322SDave May .   -viewer_binary_skip_info
426807ea322SDave May 
427807ea322SDave May     Level: advanced
428807ea322SDave May 
429807ea322SDave May .seealso: PetscViewerBinaryOpen(), PetscViewerBinaryGetDescriptor(), PetscViewerBinarySetSkipOptions(),
430807ea322SDave May           PetscViewerBinaryGetSkipOptions(), PetscViewerBinaryGetSkipInfo()
431807ea322SDave May @*/
432807ea322SDave May PetscErrorCode PetscViewerBinarySetSkipInfo(PetscViewer viewer,PetscBool skip)
433807ea322SDave May {
434807ea322SDave May   PetscErrorCode ierr;
435807ea322SDave May 
436807ea322SDave May   PetscFunctionBegin;
437807ea322SDave May   ierr = PetscUseMethod(viewer,"PetscViewerBinarySetSkipInfo_C",(PetscViewer,PetscBool),(viewer,skip));CHKERRQ(ierr);
438807ea322SDave May   PetscFunctionReturn(0);
439807ea322SDave May }
440807ea322SDave May 
44181f0254dSBarry Smith static PetscErrorCode PetscViewerBinaryGetSkipInfo_Binary(PetscViewer viewer,PetscBool *skip)
442807ea322SDave May {
443807ea322SDave May   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;
444807ea322SDave May 
445807ea322SDave May   PetscFunctionBegin;
446807ea322SDave May   *skip  = vbinary->skipinfo;
447807ea322SDave May   PetscFunctionReturn(0);
448807ea322SDave May }
449807ea322SDave May 
450807ea322SDave May /*@
451807ea322SDave May     PetscViewerBinaryGetSkipInfo - check if viewer wrote a .info file
452807ea322SDave May 
453807ea322SDave May     Not Collective
454807ea322SDave May 
455807ea322SDave May     Input Parameter:
456807ea322SDave May .   viewer - PetscViewer context, obtained from PetscViewerBinaryOpen()
457807ea322SDave May 
458807ea322SDave May     Output Parameter:
459807ea322SDave May .   skip - PETSC_TRUE implies the .info file was not generated
460807ea322SDave May 
461807ea322SDave May     Level: advanced
462807ea322SDave May 
46395452b02SPatrick Sanan     Notes:
46495452b02SPatrick Sanan     This must be called after PetscViewerSetType()
465807ea322SDave May 
466807ea322SDave May .seealso: PetscViewerBinaryOpen(), PetscViewerBinaryGetDescriptor(), PetscViewerBinarySkipInfo(),
467807ea322SDave May           PetscViewerBinarySetSkipOptions(), PetscViewerBinarySetSkipInfo()
468807ea322SDave May @*/
469807ea322SDave May PetscErrorCode PetscViewerBinaryGetSkipInfo(PetscViewer viewer,PetscBool *skip)
470807ea322SDave May {
471807ea322SDave May   PetscErrorCode ierr;
472807ea322SDave May 
473807ea322SDave May   PetscFunctionBegin;
474807ea322SDave May   ierr = PetscUseMethod(viewer,"PetscViewerBinaryGetSkipInfo_C",(PetscViewer,PetscBool*),(viewer,skip));CHKERRQ(ierr);
475807ea322SDave May   PetscFunctionReturn(0);
476807ea322SDave May }
477807ea322SDave May 
47881f0254dSBarry Smith static PetscErrorCode PetscViewerBinarySetSkipOptions_Binary(PetscViewer viewer,PetscBool skip)
479807ea322SDave May {
480807ea322SDave May   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;
481807ea322SDave May 
482807ea322SDave May   PetscFunctionBegin;
483807ea322SDave May   vbinary->skipoptions = skip;
484807ea322SDave May   PetscFunctionReturn(0);
485807ea322SDave May }
486807ea322SDave May 
4875c6c1daeSBarry Smith /*@
4885c6c1daeSBarry Smith     PetscViewerBinarySetSkipOptions - do not use the PETSc options database when loading objects
4895c6c1daeSBarry Smith 
4905c6c1daeSBarry Smith     Not Collective
4915c6c1daeSBarry Smith 
4925c6c1daeSBarry Smith     Input Parameters:
4935c6c1daeSBarry Smith +   viewer - PetscViewer context, obtained from PetscViewerBinaryOpen()
4945c6c1daeSBarry Smith -   skip - PETSC_TRUE means do not use
4955c6c1daeSBarry Smith 
4965c6c1daeSBarry Smith     Options Database Key:
4975c6c1daeSBarry Smith .   -viewer_binary_skip_options
4985c6c1daeSBarry Smith 
4995c6c1daeSBarry Smith     Level: advanced
5005c6c1daeSBarry Smith 
50195452b02SPatrick Sanan     Notes:
50295452b02SPatrick Sanan     This must be called after PetscViewerSetType()
5035c6c1daeSBarry Smith 
5045c6c1daeSBarry Smith .seealso: PetscViewerBinaryOpen(), PetscViewerBinaryGetDescriptor(), PetscViewerBinarySkipInfo(),
5055c6c1daeSBarry Smith           PetscViewerBinaryGetSkipOptions()
5065c6c1daeSBarry Smith @*/
5075c6c1daeSBarry Smith PetscErrorCode PetscViewerBinarySetSkipOptions(PetscViewer viewer,PetscBool skip)
5085c6c1daeSBarry Smith {
509807ea322SDave May   PetscErrorCode ierr;
5105c6c1daeSBarry Smith 
5115c6c1daeSBarry Smith   PetscFunctionBegin;
512807ea322SDave May   ierr = PetscUseMethod(viewer,"PetscViewerBinarySetSkipOptions_C",(PetscViewer,PetscBool),(viewer,skip));CHKERRQ(ierr);
513807ea322SDave May   PetscFunctionReturn(0);
514807ea322SDave May }
515807ea322SDave May 
51681f0254dSBarry Smith static PetscErrorCode PetscViewerBinaryGetSkipOptions_Binary(PetscViewer viewer,PetscBool *skip)
517807ea322SDave May {
518*22a8f86cSLisandro Dalcin   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;;
519807ea322SDave May 
520807ea322SDave May   PetscFunctionBegin;
521807ea322SDave May   *skip = vbinary->skipoptions;
5225c6c1daeSBarry Smith   PetscFunctionReturn(0);
5235c6c1daeSBarry Smith }
5245c6c1daeSBarry Smith 
5255c6c1daeSBarry Smith /*@
5265c6c1daeSBarry Smith     PetscViewerBinaryGetSkipOptions - checks if viewer uses the PETSc options database when loading objects
5275c6c1daeSBarry Smith 
5285c6c1daeSBarry Smith     Not Collective
5295c6c1daeSBarry Smith 
5305c6c1daeSBarry Smith     Input Parameter:
5315c6c1daeSBarry Smith .   viewer - PetscViewer context, obtained from PetscViewerBinaryOpen()
5325c6c1daeSBarry Smith 
5335c6c1daeSBarry Smith     Output Parameter:
5345c6c1daeSBarry Smith .   skip - PETSC_TRUE means do not use
5355c6c1daeSBarry Smith 
5365c6c1daeSBarry Smith     Level: advanced
5375c6c1daeSBarry Smith 
53895452b02SPatrick Sanan     Notes:
53995452b02SPatrick Sanan     This must be called after PetscViewerSetType()
5405c6c1daeSBarry Smith 
5415c6c1daeSBarry Smith .seealso: PetscViewerBinaryOpen(), PetscViewerBinaryGetDescriptor(), PetscViewerBinarySkipInfo(),
5425c6c1daeSBarry Smith           PetscViewerBinarySetSkipOptions()
5435c6c1daeSBarry Smith @*/
5445c6c1daeSBarry Smith PetscErrorCode PetscViewerBinaryGetSkipOptions(PetscViewer viewer,PetscBool *skip)
5455c6c1daeSBarry Smith {
546807ea322SDave May   PetscErrorCode ierr;
5475c6c1daeSBarry Smith 
5485c6c1daeSBarry Smith   PetscFunctionBegin;
549807ea322SDave May   ierr = PetscUseMethod(viewer,"PetscViewerBinaryGetSkipOptions_C",(PetscViewer,PetscBool*),(viewer,skip));CHKERRQ(ierr);
5505c6c1daeSBarry Smith   PetscFunctionReturn(0);
5515c6c1daeSBarry Smith }
5525c6c1daeSBarry Smith 
55381f0254dSBarry Smith static PetscErrorCode PetscViewerBinarySetSkipHeader_Binary(PetscViewer viewer,PetscBool skip)
5545c6c1daeSBarry Smith {
5555c6c1daeSBarry Smith   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;
5565c6c1daeSBarry Smith 
5575c6c1daeSBarry Smith   PetscFunctionBegin;
5585c6c1daeSBarry Smith   vbinary->skipheader = skip;
5595c6c1daeSBarry Smith   PetscFunctionReturn(0);
5605c6c1daeSBarry Smith }
5615c6c1daeSBarry Smith 
5625c6c1daeSBarry Smith /*@
5635c6c1daeSBarry Smith     PetscViewerBinarySetSkipHeader - do not write a header with size information on output, just raw data
5645c6c1daeSBarry Smith 
5655c6c1daeSBarry Smith     Not Collective
5665c6c1daeSBarry Smith 
5675c6c1daeSBarry Smith     Input Parameters:
5685c6c1daeSBarry Smith +   viewer - PetscViewer context, obtained from PetscViewerBinaryOpen()
5695c6c1daeSBarry Smith -   skip - PETSC_TRUE means do not write header
5705c6c1daeSBarry Smith 
5715c6c1daeSBarry Smith     Options Database Key:
5725c6c1daeSBarry Smith .   -viewer_binary_skip_header
5735c6c1daeSBarry Smith 
5745c6c1daeSBarry Smith     Level: advanced
5755c6c1daeSBarry Smith 
57695452b02SPatrick Sanan     Notes:
57795452b02SPatrick Sanan     This must be called after PetscViewerSetType()
5785c6c1daeSBarry Smith 
5795c6c1daeSBarry Smith            Can ONLY be called on a binary viewer
5805c6c1daeSBarry Smith 
5815c6c1daeSBarry Smith .seealso: PetscViewerBinaryOpen(), PetscViewerBinaryGetDescriptor(), PetscViewerBinarySkipInfo(),
5825c6c1daeSBarry Smith           PetscViewerBinaryGetSkipHeader()
5835c6c1daeSBarry Smith @*/
5845c6c1daeSBarry Smith PetscErrorCode PetscViewerBinarySetSkipHeader(PetscViewer viewer,PetscBool skip)
5855c6c1daeSBarry Smith {
5865c6c1daeSBarry Smith   PetscErrorCode ierr;
5875c6c1daeSBarry Smith 
5885c6c1daeSBarry Smith   PetscFunctionBegin;
5895c6c1daeSBarry Smith   ierr = PetscUseMethod(viewer,"PetscViewerBinarySetSkipHeader_C",(PetscViewer,PetscBool),(viewer,skip));CHKERRQ(ierr);
5905c6c1daeSBarry Smith   PetscFunctionReturn(0);
5915c6c1daeSBarry Smith }
5925c6c1daeSBarry Smith 
59381f0254dSBarry Smith static PetscErrorCode PetscViewerBinaryGetSkipHeader_Binary(PetscViewer viewer,PetscBool  *skip)
5945c6c1daeSBarry Smith {
5955c6c1daeSBarry Smith   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;
5965c6c1daeSBarry Smith 
5975c6c1daeSBarry Smith   PetscFunctionBegin;
5985c6c1daeSBarry Smith   *skip = vbinary->skipheader;
5995c6c1daeSBarry Smith   PetscFunctionReturn(0);
6005c6c1daeSBarry Smith }
6015c6c1daeSBarry Smith 
6025c6c1daeSBarry Smith /*@
6035c6c1daeSBarry Smith     PetscViewerBinaryGetSkipHeader - checks whether to write a header with size information on output, or just raw data
6045c6c1daeSBarry Smith 
6055c6c1daeSBarry Smith     Not Collective
6065c6c1daeSBarry Smith 
6075c6c1daeSBarry Smith     Input Parameter:
6085c6c1daeSBarry Smith .   viewer - PetscViewer context, obtained from PetscViewerBinaryOpen()
6095c6c1daeSBarry Smith 
6105c6c1daeSBarry Smith     Output Parameter:
6115c6c1daeSBarry Smith .   skip - PETSC_TRUE means do not write header
6125c6c1daeSBarry Smith 
6135c6c1daeSBarry Smith     Level: advanced
6145c6c1daeSBarry Smith 
61595452b02SPatrick Sanan     Notes:
61695452b02SPatrick Sanan     This must be called after PetscViewerSetType()
6175c6c1daeSBarry Smith 
6185c6c1daeSBarry Smith             Returns false for PETSCSOCKETVIEWER, you cannot skip the header for it.
6195c6c1daeSBarry Smith 
6205c6c1daeSBarry Smith .seealso: PetscViewerBinaryOpen(), PetscViewerBinaryGetDescriptor(), PetscViewerBinarySkipInfo(),
6215c6c1daeSBarry Smith           PetscViewerBinarySetSkipHeader()
6225c6c1daeSBarry Smith @*/
6235c6c1daeSBarry Smith PetscErrorCode PetscViewerBinaryGetSkipHeader(PetscViewer viewer,PetscBool  *skip)
6245c6c1daeSBarry Smith {
6255c6c1daeSBarry Smith   PetscErrorCode ierr;
6265c6c1daeSBarry Smith 
6275c6c1daeSBarry Smith   PetscFunctionBegin;
6285c6c1daeSBarry Smith   *skip = PETSC_FALSE;
629163d334eSBarry Smith   ierr  = PetscUseMethod(viewer,"PetscViewerBinaryGetSkipHeader_C",(PetscViewer,PetscBool*),(viewer,skip));CHKERRQ(ierr);
6305c6c1daeSBarry Smith   PetscFunctionReturn(0);
6315c6c1daeSBarry Smith }
6325c6c1daeSBarry Smith 
63381f0254dSBarry Smith static PetscErrorCode PetscViewerBinaryGetInfoPointer_Binary(PetscViewer viewer,FILE **file)
6345c6c1daeSBarry Smith {
635f3b211e4SSatish Balay   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;
636a261c58fSBarry Smith   PetscErrorCode     ierr;
637a261c58fSBarry Smith   MPI_Comm           comm;
6385c6c1daeSBarry Smith 
6395c6c1daeSBarry Smith   PetscFunctionBegin;
640c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
6415c6c1daeSBarry Smith   *file = vbinary->fdes_info;
642a261c58fSBarry Smith   if (viewer->format == PETSC_VIEWER_BINARY_MATLAB && !vbinary->matlabheaderwritten) {
643a261c58fSBarry Smith     vbinary->matlabheaderwritten = PETSC_TRUE;
644a261c58fSBarry Smith     ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
645da88d4d4SJed Brown     ierr = PetscFPrintf(comm,*file,"#--- begin code written by PetscViewerBinary for MATLAB format ---#\n");CHKERRQ(ierr);
646da88d4d4SJed Brown     ierr = PetscFPrintf(comm,*file,"#$$ Set.filename = '%s';\n",vbinary->filename);CHKERRQ(ierr);
647da88d4d4SJed Brown     ierr = PetscFPrintf(comm,*file,"#$$ fd = PetscOpenFile(Set.filename);\n");CHKERRQ(ierr);
648da88d4d4SJed Brown     ierr = PetscFPrintf(comm,*file,"#--- end code written by PetscViewerBinary for MATLAB format ---#\n\n");CHKERRQ(ierr);
649a261c58fSBarry Smith   }
6505c6c1daeSBarry Smith   PetscFunctionReturn(0);
6515c6c1daeSBarry Smith }
6525c6c1daeSBarry Smith 
6535c6c1daeSBarry Smith /*@C
6545c6c1daeSBarry Smith     PetscViewerBinaryGetInfoPointer - Extracts the file pointer for the ASCII
6555c6c1daeSBarry Smith           info file associated with a binary file.
6565c6c1daeSBarry Smith 
6575c6c1daeSBarry Smith     Not Collective
6585c6c1daeSBarry Smith 
6595c6c1daeSBarry Smith     Input Parameter:
6605c6c1daeSBarry Smith .   viewer - PetscViewer context, obtained from PetscViewerBinaryOpen()
6615c6c1daeSBarry Smith 
6625c6c1daeSBarry Smith     Output Parameter:
6630298fd71SBarry Smith .   file - file pointer  Always returns NULL if not a binary viewer
6645c6c1daeSBarry Smith 
6655c6c1daeSBarry Smith     Level: advanced
6665c6c1daeSBarry Smith 
6675c6c1daeSBarry Smith     Notes:
6685c6c1daeSBarry Smith       For writable binary PetscViewers, the descriptor will only be valid for the
6695c6c1daeSBarry Smith     first processor in the communicator that shares the PetscViewer.
6705c6c1daeSBarry Smith 
6715c6c1daeSBarry Smith     Fortran Note:
6725c6c1daeSBarry Smith     This routine is not supported in Fortran.
6735c6c1daeSBarry Smith 
6745c6c1daeSBarry Smith .seealso: PetscViewerBinaryOpen(),PetscViewerBinaryGetDescriptor()
6755c6c1daeSBarry Smith @*/
6765c6c1daeSBarry Smith PetscErrorCode PetscViewerBinaryGetInfoPointer(PetscViewer viewer,FILE **file)
6775c6c1daeSBarry Smith {
6785c6c1daeSBarry Smith   PetscErrorCode ierr;
6795c6c1daeSBarry Smith 
6805c6c1daeSBarry Smith   PetscFunctionBegin;
6810298fd71SBarry Smith   *file = NULL;
6825c6c1daeSBarry Smith   ierr  = PetscTryMethod(viewer,"PetscViewerBinaryGetInfoPointer_C",(PetscViewer,FILE **),(viewer,file));CHKERRQ(ierr);
6835c6c1daeSBarry Smith   PetscFunctionReturn(0);
6845c6c1daeSBarry Smith }
6855c6c1daeSBarry Smith 
6865c6c1daeSBarry Smith static PetscErrorCode PetscViewerFileClose_Binary(PetscViewer v)
6875c6c1daeSBarry Smith {
6885c6c1daeSBarry Smith   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)v->data;
6895c6c1daeSBarry Smith   PetscErrorCode     ierr;
6905c6c1daeSBarry Smith   PetscMPIInt        rank;
6915c6c1daeSBarry Smith   int                err;
6925c6c1daeSBarry Smith 
6935c6c1daeSBarry Smith   PetscFunctionBegin;
694ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)v),&rank);CHKERRQ(ierr);
6955c6c1daeSBarry Smith   if ((!rank || vbinary->btype == FILE_MODE_READ) && vbinary->fdes) {
6965c6c1daeSBarry Smith     close(vbinary->fdes);
6975c6c1daeSBarry Smith     if (!rank && vbinary->storecompressed) {
6985c6c1daeSBarry Smith       char par[PETSC_MAX_PATH_LEN],buf[PETSC_MAX_PATH_LEN];
6995c6c1daeSBarry Smith       FILE *fp;
7005c6c1daeSBarry Smith       /* compress the file */
701a126751eSBarry Smith       ierr = PetscStrncpy(par,"gzip -f ",sizeof(par));CHKERRQ(ierr);
702a126751eSBarry Smith       ierr = PetscStrlcat(par,vbinary->ogzfilename ? vbinary->ogzfilename : vbinary->filename,sizeof(par));CHKERRQ(ierr);
703f90597f1SStefano Zampini       ierr = PetscFree(vbinary->ogzfilename);CHKERRQ(ierr);
7045c6c1daeSBarry Smith #if defined(PETSC_HAVE_POPEN)
7050298fd71SBarry Smith       ierr = PetscPOpen(PETSC_COMM_SELF,NULL,par,"r",&fp);CHKERRQ(ierr);
7065c6c1daeSBarry Smith       if (fgets(buf,1024,fp)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error from command %s\n%s",par,buf);
707016831caSBarry Smith       ierr = PetscPClose(PETSC_COMM_SELF,fp);CHKERRQ(ierr);
7085c6c1daeSBarry Smith #else
7095c6c1daeSBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP_SYS,"Cannot run external programs on this machine");
7105c6c1daeSBarry Smith #endif
7115c6c1daeSBarry Smith     }
7125c6c1daeSBarry Smith   }
7135c6c1daeSBarry Smith   if (vbinary->fdes_info) {
7145c6c1daeSBarry Smith     err = fclose(vbinary->fdes_info);
7155c6c1daeSBarry Smith     if (err) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SYS,"fclose() failed on file");
7165c6c1daeSBarry Smith   }
7175c6c1daeSBarry Smith   PetscFunctionReturn(0);
7185c6c1daeSBarry Smith }
7195c6c1daeSBarry Smith 
720e0385b85SDave May #if defined(PETSC_HAVE_MPIIO)
721e0385b85SDave May static PetscErrorCode PetscViewerFileClose_BinaryMPIIO(PetscViewer v)
722e0385b85SDave May {
723e0385b85SDave May   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)v->data;
724e0385b85SDave May   int                err;
725e0385b85SDave May   PetscErrorCode     ierr;
726e0385b85SDave May 
727e0385b85SDave May   PetscFunctionBegin;
728e8a65b7dSLisandro Dalcin   if (vbinary->mfdes != MPI_FILE_NULL) {
729e0385b85SDave May     ierr = MPI_File_close(&vbinary->mfdes);CHKERRQ(ierr);
730e0385b85SDave May   }
731e8a65b7dSLisandro Dalcin   if (vbinary->mfsub != MPI_FILE_NULL) {
732e8a65b7dSLisandro Dalcin     ierr = MPI_File_close(&vbinary->mfsub);CHKERRQ(ierr);
733e8a65b7dSLisandro Dalcin   }
734e0385b85SDave May   if (vbinary->fdes_info) {
735e0385b85SDave May     err = fclose(vbinary->fdes_info);
736e0385b85SDave May     if (err) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SYS,"fclose() failed on file");
737e0385b85SDave May   }
738e0385b85SDave May   PetscFunctionReturn(0);
739e0385b85SDave May }
740e0385b85SDave May #endif
741e0385b85SDave May 
74281f0254dSBarry Smith static PetscErrorCode PetscViewerDestroy_Binary(PetscViewer v)
7435c6c1daeSBarry Smith {
7445c6c1daeSBarry Smith   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)v->data;
7455c6c1daeSBarry Smith   PetscErrorCode     ierr;
7465c6c1daeSBarry Smith 
7475c6c1daeSBarry Smith   PetscFunctionBegin;
748a261c58fSBarry Smith   if (v->format == PETSC_VIEWER_BINARY_MATLAB) {
749a261c58fSBarry Smith     MPI_Comm comm;
750a261c58fSBarry Smith     FILE     *info;
751a261c58fSBarry Smith 
752a261c58fSBarry Smith     ierr = PetscObjectGetComm((PetscObject)v,&comm);CHKERRQ(ierr);
753a261c58fSBarry Smith     ierr = PetscViewerBinaryGetInfoPointer(v,&info);CHKERRQ(ierr);
754da88d4d4SJed Brown     ierr = PetscFPrintf(comm,info,"#--- begin code written by PetscViewerBinary for MATLAB format ---#\n");CHKERRQ(ierr);
755da88d4d4SJed Brown     ierr = PetscFPrintf(comm,info,"#$$ close(fd);\n");CHKERRQ(ierr);
756da88d4d4SJed Brown     ierr = PetscFPrintf(comm,info,"#--- end code written by PetscViewerBinary for MATLAB format ---#\n\n");CHKERRQ(ierr);
757a261c58fSBarry Smith   }
7585c6c1daeSBarry Smith #if defined(PETSC_HAVE_MPIIO)
759bc196f7cSDave May   if (vbinary->usempiio) {
760e0385b85SDave May     ierr = PetscViewerFileClose_BinaryMPIIO(v);CHKERRQ(ierr);
761e0385b85SDave May   } else {
762e0385b85SDave May #endif
763e0385b85SDave May     ierr = PetscViewerFileClose_Binary(v);CHKERRQ(ierr);
764e0385b85SDave May #if defined(PETSC_HAVE_MPIIO)
7655c6c1daeSBarry Smith   }
7665c6c1daeSBarry Smith #endif
767f90597f1SStefano Zampini   ierr = PetscFree(vbinary->filename);CHKERRQ(ierr);
768f90597f1SStefano Zampini   ierr = PetscFree(vbinary->ogzfilename);CHKERRQ(ierr);
769e0385b85SDave May   ierr = PetscFree(vbinary);CHKERRQ(ierr);
770*22a8f86cSLisandro Dalcin 
771*22a8f86cSLisandro Dalcin   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinaryGetFlowControl_C",NULL);CHKERRQ(ierr);
772*22a8f86cSLisandro Dalcin   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinarySetFlowControl_C",NULL);CHKERRQ(ierr);
773*22a8f86cSLisandro Dalcin   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinarySetSkipHeader_C",NULL);CHKERRQ(ierr);
774*22a8f86cSLisandro Dalcin   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinaryGetSkipHeader_C",NULL);CHKERRQ(ierr);
775*22a8f86cSLisandro Dalcin   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinaryGetSkipOptions_C",NULL);CHKERRQ(ierr);
776*22a8f86cSLisandro Dalcin   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinarySetSkipOptions_C",NULL);CHKERRQ(ierr);
777*22a8f86cSLisandro Dalcin   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinaryGetSkipInfo_C",NULL);CHKERRQ(ierr);
778*22a8f86cSLisandro Dalcin   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinarySetSkipInfo_C",NULL);CHKERRQ(ierr);
779*22a8f86cSLisandro Dalcin   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinaryGetInfoPointer_C",NULL);CHKERRQ(ierr);
780*22a8f86cSLisandro Dalcin   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerFileSetName_C",NULL);CHKERRQ(ierr);
781*22a8f86cSLisandro Dalcin   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerFileSetMode_C",NULL);CHKERRQ(ierr);
782*22a8f86cSLisandro Dalcin   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerFileGetMode_C",NULL);CHKERRQ(ierr);
783*22a8f86cSLisandro Dalcin   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerFileGetName_C",NULL);CHKERRQ(ierr);
784*22a8f86cSLisandro Dalcin #if defined(PETSC_HAVE_MPIIO)
785*22a8f86cSLisandro Dalcin   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinaryGetUseMPIIO_C",NULL);CHKERRQ(ierr);
786*22a8f86cSLisandro Dalcin   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinarySetUseMPIIO_C",NULL);CHKERRQ(ierr);
787*22a8f86cSLisandro Dalcin #endif
788e0385b85SDave May   PetscFunctionReturn(0);
789e0385b85SDave May }
7905c6c1daeSBarry Smith 
7915c6c1daeSBarry Smith /*@C
7925c6c1daeSBarry Smith    PetscViewerBinaryOpen - Opens a file for binary input/output.
7935c6c1daeSBarry Smith 
794d083f849SBarry Smith    Collective
7955c6c1daeSBarry Smith 
7965c6c1daeSBarry Smith    Input Parameters:
7975c6c1daeSBarry Smith +  comm - MPI communicator
7985c6c1daeSBarry Smith .  name - name of file
7995c6c1daeSBarry Smith -  type - type of file
8005c6c1daeSBarry Smith $    FILE_MODE_WRITE - create new file for binary output
8015c6c1daeSBarry Smith $    FILE_MODE_READ - open existing file for binary input
8025c6c1daeSBarry Smith $    FILE_MODE_APPEND - open existing file for binary output
8035c6c1daeSBarry Smith 
8045c6c1daeSBarry Smith    Output Parameter:
8055c6c1daeSBarry Smith .  binv - PetscViewer for binary input/output to use with the specified file
8065c6c1daeSBarry Smith 
8075c6c1daeSBarry Smith     Options Database Keys:
80863c55180SPatrick Sanan +    -viewer_binary_filename <name> -
80963c55180SPatrick Sanan .    -viewer_binary_skip_info -
81063c55180SPatrick Sanan .    -viewer_binary_skip_options -
81163c55180SPatrick Sanan .    -viewer_binary_skip_header -
81263c55180SPatrick Sanan -    -viewer_binary_mpiio -
8135c6c1daeSBarry Smith 
8145c6c1daeSBarry Smith    Level: beginner
8155c6c1daeSBarry Smith 
8165c6c1daeSBarry Smith    Note:
8175c6c1daeSBarry Smith    This PetscViewer should be destroyed with PetscViewerDestroy().
8185c6c1daeSBarry Smith 
8195c6c1daeSBarry Smith     For reading files, the filename may begin with ftp:// or http:// and/or
8205c6c1daeSBarry Smith     end with .gz; in this case file is brought over and uncompressed.
8215c6c1daeSBarry Smith 
8225c6c1daeSBarry Smith     For creating files, if the file name ends with .gz it is automatically
8235c6c1daeSBarry Smith     compressed when closed.
8245c6c1daeSBarry Smith 
8255c6c1daeSBarry Smith     For writing files it only opens the file on processor 0 in the communicator.
8265c6c1daeSBarry Smith     For readable files it opens the file on all nodes that have the file. If
8275c6c1daeSBarry Smith     node 0 does not have the file it generates an error even if other nodes
8285c6c1daeSBarry Smith     do have the file.
8295c6c1daeSBarry Smith 
8306a9046bcSBarry Smith .seealso: PetscViewerASCIIOpen(), PetscViewerPushFormat(), PetscViewerDestroy(),
8315c6c1daeSBarry Smith           VecView(), MatView(), VecLoad(), MatLoad(), PetscViewerBinaryGetDescriptor(),
83267918a83SBarry Smith           PetscViewerBinaryGetInfoPointer(), PetscFileMode, PetscViewer, PetscViewerBinaryRead(), PetscViewerBinarySetUseMPIIO(),
83367918a83SBarry Smith           PetscViewerBinaryGetUseMPIIO(), PetscViewerBinaryGetMPIIOOffset()
8345c6c1daeSBarry Smith @*/
8355c6c1daeSBarry Smith PetscErrorCode PetscViewerBinaryOpen(MPI_Comm comm,const char name[],PetscFileMode type,PetscViewer *binv)
8365c6c1daeSBarry Smith {
8375c6c1daeSBarry Smith   PetscErrorCode ierr;
8385c6c1daeSBarry Smith 
8395c6c1daeSBarry Smith   PetscFunctionBegin;
8405c6c1daeSBarry Smith   ierr = PetscViewerCreate(comm,binv);CHKERRQ(ierr);
8415c6c1daeSBarry Smith   ierr = PetscViewerSetType(*binv,PETSCVIEWERBINARY);CHKERRQ(ierr);
8425c6c1daeSBarry Smith   ierr = PetscViewerFileSetMode(*binv,type);CHKERRQ(ierr);
8435c6c1daeSBarry Smith   ierr = PetscViewerFileSetName(*binv,name);CHKERRQ(ierr);
84403a1d59fSDave May   ierr = PetscViewerSetFromOptions(*binv);CHKERRQ(ierr);
8455c6c1daeSBarry Smith   PetscFunctionReturn(0);
8465c6c1daeSBarry Smith }
8475c6c1daeSBarry Smith 
8485c6c1daeSBarry Smith #if defined(PETSC_HAVE_MPIIO)
849060da220SMatthew G. Knepley static PetscErrorCode PetscViewerBinaryWriteReadMPIIO(PetscViewer viewer,void *data,PetscInt num,PetscInt *count,PetscDataType dtype,PetscBool write)
8505c6c1daeSBarry Smith {
851*22a8f86cSLisandro Dalcin   MPI_Comm           comm = PetscObjectComm((PetscObject)viewer);
8525c6c1daeSBarry Smith   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;
853*22a8f86cSLisandro Dalcin   MPI_File           mfdes = vbinary->mfdes;
8545c6c1daeSBarry Smith   PetscErrorCode     ierr;
8555c6c1daeSBarry Smith   MPI_Datatype       mdtype;
85669e10bbaSLisandro Dalcin   PetscMPIInt        rank,cnt;
8575c6c1daeSBarry Smith   MPI_Status         status;
8585c6c1daeSBarry Smith   MPI_Aint           ul,dsize;
8595c6c1daeSBarry Smith 
8605c6c1daeSBarry Smith   PetscFunctionBegin;
861*22a8f86cSLisandro Dalcin   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
862060da220SMatthew G. Knepley   ierr = PetscMPIIntCast(num,&cnt);CHKERRQ(ierr);
8635c6c1daeSBarry Smith   ierr = PetscDataTypeToMPIDataType(dtype,&mdtype);CHKERRQ(ierr);
8645c6c1daeSBarry Smith   if (write) {
86569e10bbaSLisandro Dalcin     if (!rank) {
86669e10bbaSLisandro Dalcin       ierr = MPIU_File_write_at(mfdes,vbinary->moff,data,cnt,mdtype,&status);CHKERRQ(ierr);
86769e10bbaSLisandro Dalcin     }
8685c6c1daeSBarry Smith   } else {
86969e10bbaSLisandro Dalcin     if (!rank) {
87069e10bbaSLisandro Dalcin       ierr = MPIU_File_read_at(mfdes,vbinary->moff,data,cnt,mdtype,&status);CHKERRQ(ierr);
8719860990eSLisandro Dalcin       if (cnt > 0) {ierr = MPI_Get_count(&status,mdtype,&cnt);CHKERRQ(ierr);}
8725c6c1daeSBarry Smith     }
873*22a8f86cSLisandro Dalcin     ierr = MPI_Bcast(&cnt,1,MPI_INT,0,comm);CHKERRQ(ierr);
874*22a8f86cSLisandro Dalcin     ierr = MPI_Bcast(data,cnt,mdtype,0,comm);CHKERRQ(ierr);
87569e10bbaSLisandro Dalcin   }
8765c6c1daeSBarry Smith   ierr = MPI_Type_get_extent(mdtype,&ul,&dsize);CHKERRQ(ierr);
8775c6c1daeSBarry Smith   vbinary->moff += dsize*cnt;
8789860990eSLisandro Dalcin   if (count) *count = cnt;
8795c6c1daeSBarry Smith   PetscFunctionReturn(0);
8805c6c1daeSBarry Smith }
8815c6c1daeSBarry Smith #endif
8825c6c1daeSBarry Smith 
8835c6c1daeSBarry Smith /*@C
8845c6c1daeSBarry Smith    PetscViewerBinaryRead - Reads from a binary file, all processors get the same result
8855c6c1daeSBarry Smith 
886d083f849SBarry Smith    Collective
8875c6c1daeSBarry Smith 
8885c6c1daeSBarry Smith    Input Parameters:
8895c6c1daeSBarry Smith +  viewer - the binary viewer
890907376e6SBarry Smith .  data - location of the data to be written
891060da220SMatthew G. Knepley .  num - number of items of data to read
892907376e6SBarry Smith -  dtype - type of data to read
8935c6c1daeSBarry Smith 
894f8e4bde8SMatthew G. Knepley    Output Parameters:
8950780a867SBarry Smith .  count - number of items of data actually read, or NULL. Unless an error is generated this is always set to the input parameter num.
896f8e4bde8SMatthew G. Knepley 
8975c6c1daeSBarry Smith    Level: beginner
8985c6c1daeSBarry Smith 
8990780a867SBarry Smith    Developer Note: Since count is always set to num it is not clear what purpose the output argument count serves.
9000780a867SBarry Smith 
9016a9046bcSBarry Smith .seealso: PetscViewerASCIIOpen(), PetscViewerPushFormat(), PetscViewerDestroy(),
9025c6c1daeSBarry Smith           VecView(), MatView(), VecLoad(), MatLoad(), PetscViewerBinaryGetDescriptor(),
9035c6c1daeSBarry Smith           PetscViewerBinaryGetInfoPointer(), PetscFileMode, PetscViewer, PetscBinaryViewerRead()
9045c6c1daeSBarry Smith @*/
905060da220SMatthew G. Knepley PetscErrorCode PetscViewerBinaryRead(PetscViewer viewer,void *data,PetscInt num,PetscInt *count,PetscDataType dtype)
9065c6c1daeSBarry Smith {
9075c6c1daeSBarry Smith   PetscErrorCode     ierr;
908*22a8f86cSLisandro Dalcin   PetscViewer_Binary *vbinary;
9095c6c1daeSBarry Smith 
910*22a8f86cSLisandro Dalcin   PetscFunctionBegin;
911*22a8f86cSLisandro Dalcin   PetscValidHeaderSpecificType(viewer,PETSC_VIEWER_CLASSID,1,PETSCVIEWERBINARY);
912*22a8f86cSLisandro Dalcin   PetscValidLogicalCollectiveInt(viewer,num,3);
913c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
914*22a8f86cSLisandro Dalcin   vbinary = (PetscViewer_Binary*)viewer->data;
9155c6c1daeSBarry Smith #if defined(PETSC_HAVE_MPIIO)
916bc196f7cSDave May   if (vbinary->usempiio) {
917060da220SMatthew G. Knepley     ierr = PetscViewerBinaryWriteReadMPIIO(viewer,data,num,count,dtype,PETSC_FALSE);CHKERRQ(ierr);
9185c6c1daeSBarry Smith   } else {
9195c6c1daeSBarry Smith #endif
9209860990eSLisandro Dalcin     ierr = PetscBinarySynchronizedRead(PetscObjectComm((PetscObject)viewer),vbinary->fdes,data,num,count,dtype);CHKERRQ(ierr);
9215c6c1daeSBarry Smith #if defined(PETSC_HAVE_MPIIO)
9225c6c1daeSBarry Smith   }
9235c6c1daeSBarry Smith #endif
9245c6c1daeSBarry Smith   PetscFunctionReturn(0);
9255c6c1daeSBarry Smith }
9265c6c1daeSBarry Smith 
9275c6c1daeSBarry Smith /*@C
9285c6c1daeSBarry Smith    PetscViewerBinaryWrite - writes to a binary file, only from the first process
9295c6c1daeSBarry Smith 
930d083f849SBarry Smith    Collective
9315c6c1daeSBarry Smith 
9325c6c1daeSBarry Smith    Input Parameters:
9335c6c1daeSBarry Smith +  viewer - the binary viewer
9345c6c1daeSBarry Smith .  data - location of data
9355824c9d0SPatrick Sanan .  count - number of items of data to write
9365824c9d0SPatrick Sanan .  dtype - type of data to write
9375c6c1daeSBarry Smith -  istemp - data may be overwritten
9385c6c1daeSBarry Smith 
9395c6c1daeSBarry Smith    Level: beginner
9405c6c1daeSBarry Smith 
94195452b02SPatrick Sanan    Notes:
94295452b02SPatrick Sanan     because byte-swapping may be done on the values in data it cannot be declared const
9435c6c1daeSBarry Smith 
9446a9046bcSBarry Smith .seealso: PetscViewerASCIIOpen(), PetscViewerPushFormat(), PetscViewerDestroy(),
9455c6c1daeSBarry Smith           VecView(), MatView(), VecLoad(), MatLoad(), PetscViewerBinaryGetDescriptor(), PetscDataType
9465c6c1daeSBarry Smith           PetscViewerBinaryGetInfoPointer(), PetscFileMode, PetscViewer, PetscBinaryViewerRead()
9475c6c1daeSBarry Smith @*/
9485c6c1daeSBarry Smith PetscErrorCode PetscViewerBinaryWrite(PetscViewer viewer,void *data,PetscInt count,PetscDataType dtype,PetscBool istemp)
9495c6c1daeSBarry Smith {
9505c6c1daeSBarry Smith   PetscErrorCode     ierr;
951*22a8f86cSLisandro Dalcin   PetscViewer_Binary *vbinary;
9525c6c1daeSBarry Smith 
9535c6c1daeSBarry Smith   PetscFunctionBegin;
954*22a8f86cSLisandro Dalcin   PetscValidHeaderSpecificType(viewer,PETSC_VIEWER_CLASSID,1,PETSCVIEWERBINARY);
955*22a8f86cSLisandro Dalcin   PetscValidLogicalCollectiveInt(viewer,count,3);
956c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
957*22a8f86cSLisandro Dalcin   vbinary = (PetscViewer_Binary*)viewer->data;
9585c6c1daeSBarry Smith #if defined(PETSC_HAVE_MPIIO)
959bc196f7cSDave May   if (vbinary->usempiio) {
960060da220SMatthew G. Knepley     ierr = PetscViewerBinaryWriteReadMPIIO(viewer,data,count,NULL,dtype,PETSC_TRUE);CHKERRQ(ierr);
9615c6c1daeSBarry Smith   } else {
9625c6c1daeSBarry Smith #endif
963ce94432eSBarry Smith     ierr = PetscBinarySynchronizedWrite(PetscObjectComm((PetscObject)viewer),vbinary->fdes,data,count,dtype,istemp);CHKERRQ(ierr);
9645c6c1daeSBarry Smith #if defined(PETSC_HAVE_MPIIO)
9655c6c1daeSBarry Smith   }
9665c6c1daeSBarry Smith #endif
9675c6c1daeSBarry Smith   PetscFunctionReturn(0);
9685c6c1daeSBarry Smith }
9695c6c1daeSBarry Smith 
9705c6c1daeSBarry Smith /*@C
9715c6c1daeSBarry Smith    PetscViewerBinaryWriteStringArray - writes to a binary file, only from the first process an array of strings
9725c6c1daeSBarry Smith 
973d083f849SBarry Smith    Collective
9745c6c1daeSBarry Smith 
9755c6c1daeSBarry Smith    Input Parameters:
9765c6c1daeSBarry Smith +  viewer - the binary viewer
9775c6c1daeSBarry Smith -  data - location of the array of strings
9785c6c1daeSBarry Smith 
9795c6c1daeSBarry Smith 
9805c6c1daeSBarry Smith    Level: intermediate
9815c6c1daeSBarry Smith 
98295452b02SPatrick Sanan     Notes:
98395452b02SPatrick Sanan     array of strings is null terminated
9845c6c1daeSBarry Smith 
9856a9046bcSBarry Smith .seealso: PetscViewerASCIIOpen(), PetscViewerPushFormat(), PetscViewerDestroy(),
9865c6c1daeSBarry Smith           VecView(), MatView(), VecLoad(), MatLoad(), PetscViewerBinaryGetDescriptor(),
9875c6c1daeSBarry Smith           PetscViewerBinaryGetInfoPointer(), PetscFileMode, PetscViewer, PetscBinaryViewerRead()
9885c6c1daeSBarry Smith @*/
98978fbdcc8SBarry Smith PetscErrorCode PetscViewerBinaryWriteStringArray(PetscViewer viewer,const char * const *data)
9905c6c1daeSBarry Smith {
9915c6c1daeSBarry Smith   PetscErrorCode ierr;
9925c6c1daeSBarry Smith   PetscInt       i,n = 0,*sizes;
9935c6c1daeSBarry Smith 
994*22a8f86cSLisandro Dalcin   PetscFunctionBegin;
995c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
9965c6c1daeSBarry Smith   /* count number of strings */
9975c6c1daeSBarry Smith   while (data[n++]) ;
9985c6c1daeSBarry Smith   n--;
999854ce69bSBarry Smith   ierr     = PetscMalloc1(n+1,&sizes);CHKERRQ(ierr);
10005c6c1daeSBarry Smith   sizes[0] = n;
10015c6c1daeSBarry Smith   for (i=0; i<n; i++) {
10025c6c1daeSBarry Smith     size_t tmp;
10035c6c1daeSBarry Smith     ierr       = PetscStrlen(data[i],&tmp);CHKERRQ(ierr);
10045c6c1daeSBarry Smith     sizes[i+1] = tmp + 1;   /* size includes space for the null terminator */
10055c6c1daeSBarry Smith   }
10065c6c1daeSBarry Smith   ierr = PetscViewerBinaryWrite(viewer,sizes,n+1,PETSC_INT,PETSC_FALSE);CHKERRQ(ierr);
10075c6c1daeSBarry Smith   for (i=0; i<n; i++) {
100878fbdcc8SBarry Smith     ierr = PetscViewerBinaryWrite(viewer,(void*)data[i],sizes[i+1],PETSC_CHAR,PETSC_FALSE);CHKERRQ(ierr);
10095c6c1daeSBarry Smith   }
10105c6c1daeSBarry Smith   ierr = PetscFree(sizes);CHKERRQ(ierr);
10115c6c1daeSBarry Smith   PetscFunctionReturn(0);
10125c6c1daeSBarry Smith }
10135c6c1daeSBarry Smith 
10145c6c1daeSBarry Smith /*@C
10155c6c1daeSBarry Smith    PetscViewerBinaryReadStringArray - reads a binary file an array of strings
10165c6c1daeSBarry Smith 
1017d083f849SBarry Smith    Collective
10185c6c1daeSBarry Smith 
10195c6c1daeSBarry Smith    Input Parameter:
10205c6c1daeSBarry Smith .  viewer - the binary viewer
10215c6c1daeSBarry Smith 
10225c6c1daeSBarry Smith    Output Parameter:
10235c6c1daeSBarry Smith .  data - location of the array of strings
10245c6c1daeSBarry Smith 
10255c6c1daeSBarry Smith    Level: intermediate
10265c6c1daeSBarry Smith 
102795452b02SPatrick Sanan     Notes:
102895452b02SPatrick Sanan     array of strings is null terminated
10295c6c1daeSBarry Smith 
10306a9046bcSBarry Smith .seealso: PetscViewerASCIIOpen(), PetscViewerPushFormat(), PetscViewerDestroy(),
10315c6c1daeSBarry Smith           VecView(), MatView(), VecLoad(), MatLoad(), PetscViewerBinaryGetDescriptor(),
10325c6c1daeSBarry Smith           PetscViewerBinaryGetInfoPointer(), PetscFileMode, PetscViewer, PetscBinaryViewerRead()
10335c6c1daeSBarry Smith @*/
10345c6c1daeSBarry Smith PetscErrorCode PetscViewerBinaryReadStringArray(PetscViewer viewer,char ***data)
10355c6c1daeSBarry Smith {
10365c6c1daeSBarry Smith   PetscErrorCode ierr;
1037060da220SMatthew G. Knepley   PetscInt       i,n,*sizes,N = 0;
10385c6c1daeSBarry Smith 
1039*22a8f86cSLisandro Dalcin   PetscFunctionBegin;
1040c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
10415c6c1daeSBarry Smith   /* count number of strings */
1042060da220SMatthew G. Knepley   ierr = PetscViewerBinaryRead(viewer,&n,1,NULL,PETSC_INT);CHKERRQ(ierr);
1043785e854fSJed Brown   ierr = PetscMalloc1(n,&sizes);CHKERRQ(ierr);
1044060da220SMatthew G. Knepley   ierr = PetscViewerBinaryRead(viewer,sizes,n,NULL,PETSC_INT);CHKERRQ(ierr);
1045a297a907SKarl Rupp   for (i=0; i<n; i++) N += sizes[i];
1046854ce69bSBarry Smith   ierr = PetscMalloc((n+1)*sizeof(char*) + N*sizeof(char),data);CHKERRQ(ierr);
10475c6c1daeSBarry Smith   (*data)[0] = (char*)((*data) + n + 1);
1048a297a907SKarl Rupp   for (i=1; i<n; i++) (*data)[i] = (*data)[i-1] + sizes[i-1];
1049060da220SMatthew G. Knepley   ierr = PetscViewerBinaryRead(viewer,(*data)[0],N,NULL,PETSC_CHAR);CHKERRQ(ierr);
1050a297a907SKarl Rupp 
105102c9f0b5SLisandro Dalcin   (*data)[n] = NULL;
1052a297a907SKarl Rupp 
10535c6c1daeSBarry Smith   ierr = PetscFree(sizes);CHKERRQ(ierr);
10545c6c1daeSBarry Smith   PetscFunctionReturn(0);
10555c6c1daeSBarry Smith }
10565c6c1daeSBarry Smith 
105781f0254dSBarry Smith static PetscErrorCode PetscViewerFileGetName_Binary(PetscViewer viewer,const char **name)
10585c6c1daeSBarry Smith {
10595c6c1daeSBarry Smith   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;
10605c6c1daeSBarry Smith 
10615c6c1daeSBarry Smith   PetscFunctionBegin;
10625c6c1daeSBarry Smith   *name = vbinary->filename;
10635c6c1daeSBarry Smith   PetscFunctionReturn(0);
10645c6c1daeSBarry Smith }
10655c6c1daeSBarry Smith 
10665c6c1daeSBarry Smith /*@C
10675c6c1daeSBarry Smith      PetscViewerFileGetMode - Gets the type of file to be open
10685c6c1daeSBarry Smith 
10695c6c1daeSBarry Smith     Not Collective
10705c6c1daeSBarry Smith 
10715c6c1daeSBarry Smith   Input Parameter:
1072232ac771SBarry Smith .  viewer - the PetscViewer; must be a PETSCVIEWERBINARY, PETSCVIEWERMATLAB, PETSCVIEWERHDF5, or PETSCVIEWERASCII  PetscViewer
10735c6c1daeSBarry Smith 
10745c6c1daeSBarry Smith   Output Parameter:
10755c6c1daeSBarry Smith .  type - type of file
10765c6c1daeSBarry Smith $    FILE_MODE_WRITE - create new file for binary output
10775c6c1daeSBarry Smith $    FILE_MODE_READ - open existing file for binary input
10785c6c1daeSBarry Smith $    FILE_MODE_APPEND - open existing file for binary output
10795c6c1daeSBarry Smith 
10805c6c1daeSBarry Smith   Level: advanced
10815c6c1daeSBarry Smith 
10825c6c1daeSBarry Smith .seealso: PetscViewerFileSetMode(), PetscViewerCreate(), PetscViewerSetType(), PetscViewerBinaryOpen()
10835c6c1daeSBarry Smith 
10845c6c1daeSBarry Smith @*/
10855c6c1daeSBarry Smith PetscErrorCode PetscViewerFileGetMode(PetscViewer viewer,PetscFileMode *type)
10865c6c1daeSBarry Smith {
10875c6c1daeSBarry Smith   PetscErrorCode ierr;
10885c6c1daeSBarry Smith 
10895c6c1daeSBarry Smith   PetscFunctionBegin;
10905c6c1daeSBarry Smith   PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,1);
10915c6c1daeSBarry Smith   PetscValidPointer(type,2);
10925c6c1daeSBarry Smith   ierr = PetscUseMethod(viewer,"PetscViewerFileGetMode_C",(PetscViewer,PetscFileMode*),(viewer,type));CHKERRQ(ierr);
10935c6c1daeSBarry Smith   PetscFunctionReturn(0);
10945c6c1daeSBarry Smith }
10955c6c1daeSBarry Smith 
10965c6c1daeSBarry Smith /*@
1097bc196f7cSDave May     PetscViewerBinarySetUseMPIIO - Sets a binary viewer to use MPI-IO for reading/writing. Must be called
10985c6c1daeSBarry Smith         before PetscViewerFileSetName()
10995c6c1daeSBarry Smith 
11005c6c1daeSBarry Smith     Logically Collective on PetscViewer
11015c6c1daeSBarry Smith 
11025c6c1daeSBarry Smith     Input Parameters:
1103bc196f7cSDave May +   viewer - the PetscViewer; must be a binary
1104bc196f7cSDave May -   flg - PETSC_TRUE means MPI-IO will be used
11055c6c1daeSBarry Smith 
11065c6c1daeSBarry Smith     Options Database:
11075c6c1daeSBarry Smith     -viewer_binary_mpiio : Flag for using MPI-IO
11085c6c1daeSBarry Smith 
11095c6c1daeSBarry Smith     Level: advanced
11105c6c1daeSBarry Smith 
1111bc196f7cSDave May .seealso: PetscViewerFileSetMode(), PetscViewerCreate(), PetscViewerSetType(), PetscViewerBinaryOpen(),
1112bc196f7cSDave May           PetscViewerBinaryGetUseMPIIO()
11135c6c1daeSBarry Smith 
11145c6c1daeSBarry Smith @*/
1115bc196f7cSDave May PetscErrorCode PetscViewerBinarySetUseMPIIO(PetscViewer viewer,PetscBool flg)
11165c6c1daeSBarry Smith {
11175c6c1daeSBarry Smith   PetscErrorCode ierr;
11185c6c1daeSBarry Smith 
11195c6c1daeSBarry Smith   PetscFunctionBegin;
11205c6c1daeSBarry Smith   PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,1);
1121*22a8f86cSLisandro Dalcin   PetscValidLogicalCollectiveBool(viewer,flg,2);
1122bc196f7cSDave May   ierr = PetscTryMethod(viewer,"PetscViewerBinarySetUseMPIIO_C",(PetscViewer,PetscBool),(viewer,flg));CHKERRQ(ierr);
11235c6c1daeSBarry Smith   PetscFunctionReturn(0);
11245c6c1daeSBarry Smith }
11255c6c1daeSBarry Smith 
11265c6c1daeSBarry Smith /*@C
11275c6c1daeSBarry Smith      PetscViewerFileSetMode - Sets the type of file to be open
11285c6c1daeSBarry Smith 
11295c6c1daeSBarry Smith     Logically Collective on PetscViewer
11305c6c1daeSBarry Smith 
11315c6c1daeSBarry Smith   Input Parameters:
1132232ac771SBarry Smith +  viewer - the PetscViewer; must be a a PETSCVIEWERBINARY, PETSCVIEWERMATLAB, PETSCVIEWERHDF5, or PETSCVIEWERASCII  PetscViewer
11335c6c1daeSBarry Smith -  type - type of file
1134f8859db6SBarry Smith $    FILE_MODE_WRITE - create new file for output
1135f8859db6SBarry Smith $    FILE_MODE_READ - open existing file for input
1136f8859db6SBarry Smith $    FILE_MODE_APPEND - open existing file for output
11375c6c1daeSBarry Smith 
11385c6c1daeSBarry Smith   Level: advanced
11395c6c1daeSBarry Smith 
11405c6c1daeSBarry Smith .seealso: PetscViewerFileSetMode(), PetscViewerCreate(), PetscViewerSetType(), PetscViewerBinaryOpen()
11415c6c1daeSBarry Smith 
11425c6c1daeSBarry Smith @*/
11435c6c1daeSBarry Smith PetscErrorCode PetscViewerFileSetMode(PetscViewer viewer,PetscFileMode type)
11445c6c1daeSBarry Smith {
11455c6c1daeSBarry Smith   PetscErrorCode ierr;
11465c6c1daeSBarry Smith 
11475c6c1daeSBarry Smith   PetscFunctionBegin;
11485c6c1daeSBarry Smith   PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,1);
11495c6c1daeSBarry Smith   PetscValidLogicalCollectiveEnum(viewer,type,2);
11505c6c1daeSBarry Smith   ierr = PetscTryMethod(viewer,"PetscViewerFileSetMode_C",(PetscViewer,PetscFileMode),(viewer,type));CHKERRQ(ierr);
11515c6c1daeSBarry Smith   PetscFunctionReturn(0);
11525c6c1daeSBarry Smith }
11535c6c1daeSBarry Smith 
115481f0254dSBarry Smith static PetscErrorCode PetscViewerFileGetMode_Binary(PetscViewer viewer,PetscFileMode *type)
11555c6c1daeSBarry Smith {
11565c6c1daeSBarry Smith   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;
11575c6c1daeSBarry Smith 
11585c6c1daeSBarry Smith   PetscFunctionBegin;
11595c6c1daeSBarry Smith   *type = vbinary->btype;
11605c6c1daeSBarry Smith   PetscFunctionReturn(0);
11615c6c1daeSBarry Smith }
11625c6c1daeSBarry Smith 
116381f0254dSBarry Smith static PetscErrorCode PetscViewerFileSetMode_Binary(PetscViewer viewer,PetscFileMode type)
11645c6c1daeSBarry Smith {
11655c6c1daeSBarry Smith   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;
11665c6c1daeSBarry Smith 
11675c6c1daeSBarry Smith   PetscFunctionBegin;
1168*22a8f86cSLisandro Dalcin   if (viewer->setupcalled && vbinary->btype != type) SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_ORDER,"Cannot change mode to %s after setup",PetscFileModes[type]);
11695c6c1daeSBarry Smith   vbinary->btype = type;
11705c6c1daeSBarry Smith   PetscFunctionReturn(0);
11715c6c1daeSBarry Smith }
11725c6c1daeSBarry Smith 
117381f0254dSBarry Smith static PetscErrorCode PetscViewerFileSetName_Binary(PetscViewer viewer,const char name[])
1174e0385b85SDave May {
1175e0385b85SDave May   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;
1176e0385b85SDave May   PetscErrorCode     ierr;
1177e0385b85SDave May 
1178e0385b85SDave May   PetscFunctionBegin;
1179f90597f1SStefano Zampini   if (vbinary->filename) {
1180f90597f1SStefano Zampini     /* gzip can be run after the file with the previous filename has been closed */
1181f90597f1SStefano Zampini     ierr = PetscFree(vbinary->ogzfilename);CHKERRQ(ierr);
1182f90597f1SStefano Zampini     ierr = PetscStrallocpy(vbinary->filename,&vbinary->ogzfilename);CHKERRQ(ierr);
1183f90597f1SStefano Zampini     ierr = PetscFree(vbinary->filename);CHKERRQ(ierr);
1184f90597f1SStefano Zampini     viewer->setupcalled = PETSC_FALSE;
1185f90597f1SStefano Zampini   }
1186e0385b85SDave May   ierr = PetscStrallocpy(name,&vbinary->filename);CHKERRQ(ierr);
1187e0385b85SDave May   PetscFunctionReturn(0);
1188e0385b85SDave May }
11895c6c1daeSBarry Smith /*
11905c6c1daeSBarry Smith         Actually opens the file
11915c6c1daeSBarry Smith */
1192e0877f53SBarry Smith static PetscErrorCode PetscViewerFileSetUp_Binary(PetscViewer viewer)
11935c6c1daeSBarry Smith {
11945c6c1daeSBarry Smith   PetscMPIInt        rank;
11955c6c1daeSBarry Smith   PetscErrorCode     ierr;
11965c6c1daeSBarry Smith   size_t             len;
11975c6c1daeSBarry Smith   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;
11985c6c1daeSBarry Smith   const char         *fname;
11992259a519SDave May   char               bname[PETSC_MAX_PATH_LEN],*gz;
12005c6c1daeSBarry Smith   PetscBool          found;
12015c6c1daeSBarry Smith   PetscFileMode      type = vbinary->btype;
12025c6c1daeSBarry Smith 
12035c6c1daeSBarry Smith   PetscFunctionBegin;
1204e0385b85SDave May   if (type == (PetscFileMode) -1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call PetscViewerFileSetMode()");
12052259a519SDave May   if (!vbinary->filename) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call PetscViewerFileSetName()");
12065c6c1daeSBarry Smith   ierr = PetscViewerFileClose_Binary(viewer);CHKERRQ(ierr);
12075c6c1daeSBarry Smith 
1208ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)viewer),&rank);CHKERRQ(ierr);
12095c6c1daeSBarry Smith 
12105c6c1daeSBarry Smith   /* if ends in .gz strip that off and note user wants file compressed */
12115c6c1daeSBarry Smith   vbinary->storecompressed = PETSC_FALSE;
12125c6c1daeSBarry Smith   if (!rank && type == FILE_MODE_WRITE) {
12135c6c1daeSBarry Smith     /* remove .gz if it ends library name */
12145c6c1daeSBarry Smith     ierr = PetscStrstr(vbinary->filename,".gz",&gz);CHKERRQ(ierr);
12155c6c1daeSBarry Smith     if (gz) {
12165c6c1daeSBarry Smith       ierr = PetscStrlen(gz,&len);CHKERRQ(ierr);
12175c6c1daeSBarry Smith       if (len == 3) {
12185c6c1daeSBarry Smith         *gz = 0;
12195c6c1daeSBarry Smith         vbinary->storecompressed = PETSC_TRUE;
12205c6c1daeSBarry Smith       }
12215c6c1daeSBarry Smith     }
12225c6c1daeSBarry Smith   }
12235c6c1daeSBarry Smith 
12245c6c1daeSBarry Smith   /* only first processor opens file if writeable */
12255c6c1daeSBarry Smith   if (!rank || type == FILE_MODE_READ) {
12265c6c1daeSBarry Smith 
12275c6c1daeSBarry Smith     if (type == FILE_MODE_READ) {
12285c6c1daeSBarry Smith       /* possibly get the file from remote site or compressed file */
1229ce94432eSBarry Smith       ierr  = PetscFileRetrieve(PetscObjectComm((PetscObject)viewer),vbinary->filename,bname,PETSC_MAX_PATH_LEN,&found);CHKERRQ(ierr);
12305c6c1daeSBarry Smith       fname = bname;
123141c4be4aSVaclav Hapla       /* comm below may be global as all ranks go here for FILE_MODE_READ and output 'found' of PetscFileRetrieve() is valid on all processes */
123241c4be4aSVaclav Hapla       if (!found) SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_OPEN,"Cannot locate file: %s on node zero",vbinary->filename);
1233a297a907SKarl Rupp     } else fname = vbinary->filename;
123455819941SStefano Zampini     if (type == FILE_MODE_APPEND) { /* check if asked to append to a non-existing file */
123555819941SStefano Zampini       ierr = PetscTestFile(fname,'\0',&found);CHKERRQ(ierr);
123655819941SStefano Zampini     }
12375c6c1daeSBarry Smith 
12385c6c1daeSBarry Smith #if defined(PETSC_HAVE_O_BINARY)
123955819941SStefano Zampini     if (type == FILE_MODE_WRITE || (type == FILE_MODE_APPEND && !found) ) {
12405c6c1daeSBarry Smith       if ((vbinary->fdes = open(fname,O_WRONLY|O_CREAT|O_TRUNC|O_BINARY,0666)) == -1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot create file %s for writing",fname);
12415c6c1daeSBarry Smith     } else if (type == FILE_MODE_READ && fname) {
12425c6c1daeSBarry Smith       if ((vbinary->fdes = open(fname,O_RDONLY|O_BINARY,0)) == -1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot open file %s for reading",fname);
12435c6c1daeSBarry Smith     } else if (type == FILE_MODE_APPEND) {
12445c6c1daeSBarry Smith       if ((vbinary->fdes = open(fname,O_WRONLY|O_APPEND|O_BINARY,0)) == -1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot open file %s for writing",fname);
12455c6c1daeSBarry Smith     } else if (fname) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Unknown file type");
12465c6c1daeSBarry Smith #else
124755819941SStefano Zampini     if (type == FILE_MODE_WRITE || (type == FILE_MODE_APPEND && !found) ) {
12485c6c1daeSBarry Smith       if ((vbinary->fdes = creat(fname,0666)) == -1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot create file %s for writing",fname);
12495c6c1daeSBarry Smith     } else if (type == FILE_MODE_READ && fname) {
12505c6c1daeSBarry Smith       if ((vbinary->fdes = open(fname,O_RDONLY,0)) == -1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot open file %s for reading",fname);
12515c6c1daeSBarry Smith     } else if (type == FILE_MODE_APPEND) {
12525c6c1daeSBarry Smith       if ((vbinary->fdes = open(fname,O_WRONLY|O_APPEND,0)) == -1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot open file %s for writing",fname);
12535c6c1daeSBarry Smith     } else if (fname) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Unknown file type");
12545c6c1daeSBarry Smith #endif
12555c6c1daeSBarry Smith   } else vbinary->fdes = -1;
12565c6c1daeSBarry Smith 
12575c6c1daeSBarry Smith   /*
12585c6c1daeSBarry Smith       try to open info file: all processors open this file if read only
12595c6c1daeSBarry Smith   */
12605c6c1daeSBarry Smith   if (!vbinary->skipinfo && (!rank || type == FILE_MODE_READ)) {
12615c6c1daeSBarry Smith     char infoname[PETSC_MAX_PATH_LEN],iname[PETSC_MAX_PATH_LEN];
12625c6c1daeSBarry Smith 
1263a126751eSBarry Smith     ierr = PetscStrncpy(infoname,vbinary->filename,sizeof(infoname));CHKERRQ(ierr);
12645c6c1daeSBarry Smith     /* remove .gz if it ends library name */
12655c6c1daeSBarry Smith     ierr = PetscStrstr(infoname,".gz",&gz);CHKERRQ(ierr);
12665c6c1daeSBarry Smith     if (gz) {
12675c6c1daeSBarry Smith       ierr = PetscStrlen(gz,&len);CHKERRQ(ierr);
1268a297a907SKarl Rupp       if (len == 3) *gz = 0;
12695c6c1daeSBarry Smith     }
12705c6c1daeSBarry Smith 
1271a126751eSBarry Smith     ierr = PetscStrlcat(infoname,".info",sizeof(infoname));CHKERRQ(ierr);
12725c6c1daeSBarry Smith     ierr = PetscFixFilename(infoname,iname);CHKERRQ(ierr);
12735c6c1daeSBarry Smith     if (type == FILE_MODE_READ) {
1274ce94432eSBarry Smith       ierr = PetscFileRetrieve(PetscObjectComm((PetscObject)viewer),iname,infoname,PETSC_MAX_PATH_LEN,&found);CHKERRQ(ierr);
12751f5e1f59SVaclav Hapla       if (found) {
1276c5929fdfSBarry Smith         ierr = PetscOptionsInsertFile(PetscObjectComm((PetscObject)viewer),((PetscObject)viewer)->options,infoname,PETSC_FALSE);CHKERRQ(ierr);
12771f5e1f59SVaclav Hapla       }
12785c6c1daeSBarry Smith     } else {
12795c6c1daeSBarry Smith       vbinary->fdes_info = fopen(infoname,"w");
12805c6c1daeSBarry Smith       if (!vbinary->fdes_info) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot open .info file %s for writing",infoname);
12815c6c1daeSBarry Smith     }
12825c6c1daeSBarry Smith   }
12835c6c1daeSBarry Smith #if defined(PETSC_USE_LOG)
1284e0385b85SDave May   PetscLogObjectState((PetscObject)viewer,"File: %s",vbinary->filename);
12855c6c1daeSBarry Smith #endif
12865c6c1daeSBarry Smith   PetscFunctionReturn(0);
12875c6c1daeSBarry Smith }
12885c6c1daeSBarry Smith 
12895c6c1daeSBarry Smith #if defined(PETSC_HAVE_MPIIO)
1290e0385b85SDave May static PetscErrorCode PetscViewerFileSetUp_BinaryMPIIO(PetscViewer viewer)
12915c6c1daeSBarry Smith {
12925c6c1daeSBarry Smith   PetscMPIInt        rank;
12935c6c1daeSBarry Smith   PetscErrorCode     ierr;
12945c6c1daeSBarry Smith   size_t             len;
12955c6c1daeSBarry Smith   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;
12962259a519SDave May   char               *gz;
12975c6c1daeSBarry Smith   PetscBool          found;
12985c6c1daeSBarry Smith   PetscFileMode      type = vbinary->btype;
1299e8a65b7dSLisandro Dalcin   int                amode;
13005c6c1daeSBarry Smith 
13015c6c1daeSBarry Smith   PetscFunctionBegin;
1302e0385b85SDave May   if (type == (PetscFileMode) -1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call PetscViewerFileSetMode()");
13032259a519SDave May   if (!vbinary->filename) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call PetscViewerFileSetName()");
1304e0385b85SDave May   ierr = PetscViewerFileClose_BinaryMPIIO(viewer);CHKERRQ(ierr);
13055c6c1daeSBarry Smith 
1306a297a907SKarl Rupp   vbinary->storecompressed = PETSC_FALSE;
13075c6c1daeSBarry Smith 
1308e8a65b7dSLisandro Dalcin   switch (type) {
1309e8a65b7dSLisandro Dalcin   case FILE_MODE_READ:   amode = MPI_MODE_RDONLY; break;
1310e8a65b7dSLisandro Dalcin   case FILE_MODE_WRITE:  amode = MPI_MODE_WRONLY | MPI_MODE_CREATE; break;
1311*22a8f86cSLisandro Dalcin   case FILE_MODE_APPEND: amode = MPI_MODE_WRONLY | MPI_MODE_CREATE | MPI_MODE_APPEND; break;
1312e8a65b7dSLisandro Dalcin   default: SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Unsupported file mode %s",PetscFileModes[type]);
13135c6c1daeSBarry Smith   }
1314e8a65b7dSLisandro Dalcin   ierr = MPI_File_open(PetscObjectComm((PetscObject)viewer),vbinary->filename,amode,MPI_INFO_NULL,&vbinary->mfdes);CHKERRQ(ierr);
1315*22a8f86cSLisandro Dalcin   /*
1316*22a8f86cSLisandro Dalcin       The MPI standard does not have MPI_MODE_TRUNCATE. We emulate this behavior by setting the file size to zero.
1317*22a8f86cSLisandro Dalcin   */
1318*22a8f86cSLisandro Dalcin   if (type == FILE_MODE_WRITE) {ierr = MPI_File_set_size(vbinary->mfdes,0);CHKERRQ(ierr);}
1319*22a8f86cSLisandro Dalcin   /*
1320*22a8f86cSLisandro Dalcin       Initially, all processes view the file as a linear byte stream. Therefore, for files opened with MPI_MODE_APPEND,
1321*22a8f86cSLisandro Dalcin       MPI_File_get_position[_shared](fh, &offset) returns the absolute byte position at the end of file.
1322*22a8f86cSLisandro Dalcin       Otherwise, we would need to call MPI_File_get_byte_offset(fh, offset, &byte_offset) to convert
1323*22a8f86cSLisandro Dalcin       the offset in etype units to an absolute byte position.
1324*22a8f86cSLisandro Dalcin    */
1325*22a8f86cSLisandro Dalcin   if (type == FILE_MODE_APPEND) {ierr = MPI_File_get_position(vbinary->mfdes,&vbinary->moff);CHKERRQ(ierr);}
13265c6c1daeSBarry Smith 
13275c6c1daeSBarry Smith   /*
13285c6c1daeSBarry Smith       try to open info file: all processors open this file if read only
13295c6c1daeSBarry Smith 
1330bebe2cf6SSatish Balay       Below is identical code to the code for Binary above, should be put in separate routine
13315c6c1daeSBarry Smith   */
1332e8a65b7dSLisandro Dalcin   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)viewer),&rank);CHKERRQ(ierr);
13335c6c1daeSBarry Smith   if (!vbinary->skipinfo && (!rank || type == FILE_MODE_READ)) {
13345c6c1daeSBarry Smith     char infoname[PETSC_MAX_PATH_LEN],iname[PETSC_MAX_PATH_LEN];
13355c6c1daeSBarry Smith 
1336a126751eSBarry Smith     ierr = PetscStrncpy(infoname,vbinary->filename,sizeof(infoname));CHKERRQ(ierr);
13375c6c1daeSBarry Smith     /* remove .gz if it ends library name */
13385c6c1daeSBarry Smith     ierr = PetscStrstr(infoname,".gz",&gz);CHKERRQ(ierr);
13395c6c1daeSBarry Smith     if (gz) {
13405c6c1daeSBarry Smith       ierr = PetscStrlen(gz,&len);CHKERRQ(ierr);
1341a297a907SKarl Rupp       if (len == 3) *gz = 0;
13425c6c1daeSBarry Smith     }
13435c6c1daeSBarry Smith 
1344a126751eSBarry Smith     ierr = PetscStrlcat(infoname,".info",sizeof(infoname));CHKERRQ(ierr);
13455c6c1daeSBarry Smith     ierr = PetscFixFilename(infoname,iname);CHKERRQ(ierr);
13465c6c1daeSBarry Smith     if (type == FILE_MODE_READ) {
1347ce94432eSBarry Smith       ierr = PetscFileRetrieve(PetscObjectComm((PetscObject)viewer),iname,infoname,PETSC_MAX_PATH_LEN,&found);CHKERRQ(ierr);
1348c5929fdfSBarry Smith       ierr = PetscOptionsInsertFile(PetscObjectComm((PetscObject)viewer),((PetscObject)viewer)->options,infoname,PETSC_FALSE);CHKERRQ(ierr);
13495c6c1daeSBarry Smith     } else {
13505c6c1daeSBarry Smith       vbinary->fdes_info = fopen(infoname,"w");
13515c6c1daeSBarry Smith       if (!vbinary->fdes_info) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot open .info file %s for writing",infoname);
13525c6c1daeSBarry Smith     }
13535c6c1daeSBarry Smith   }
13545c6c1daeSBarry Smith #if defined(PETSC_USE_LOG)
1355e0385b85SDave May   PetscLogObjectState((PetscObject)viewer,"File: %s",vbinary->filename);
13565c6c1daeSBarry Smith #endif
13575c6c1daeSBarry Smith   PetscFunctionReturn(0);
13585c6c1daeSBarry Smith }
13595c6c1daeSBarry Smith 
136081f0254dSBarry Smith static PetscErrorCode PetscViewerBinarySetUseMPIIO_Binary(PetscViewer viewer,PetscBool flg)
13615c6c1daeSBarry Smith {
13625c6c1daeSBarry Smith   PetscViewer_Binary *vbinary = (PetscViewer_Binary*)viewer->data;
13635c6c1daeSBarry Smith   PetscFunctionBegin;
1364*22a8f86cSLisandro Dalcin   if (viewer->setupcalled && vbinary->usempiio != flg) SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_ORDER,"Cannot change MPIIO to %s after setup",PetscBools[flg]);
1365bc196f7cSDave May   vbinary->usempiio = flg;
13665c6c1daeSBarry Smith   PetscFunctionReturn(0);
13675c6c1daeSBarry Smith }
13685c6c1daeSBarry Smith #endif
13695c6c1daeSBarry Smith 
137081f0254dSBarry Smith static PetscErrorCode PetscViewerView_Binary(PetscViewer v,PetscViewer viewer)
13712bf49c77SBarry Smith {
13722bf49c77SBarry Smith   PetscErrorCode     ierr;
13732bf49c77SBarry Smith   PetscViewer_Binary *binary = (PetscViewer_Binary*)v->data;
13742bf49c77SBarry Smith 
13752bf49c77SBarry Smith   PetscFunctionBegin;
13762bf49c77SBarry Smith   if (binary->filename) {
13772bf49c77SBarry Smith     ierr = PetscViewerASCIIPrintf(viewer,"Filename: %s\n",binary->filename);CHKERRQ(ierr);
13782bf49c77SBarry Smith   }
13792bf49c77SBarry Smith   PetscFunctionReturn(0);
13802bf49c77SBarry Smith }
13812bf49c77SBarry Smith 
138203a1d59fSDave May static PetscErrorCode PetscViewerSetUp_Binary(PetscViewer v)
138303a1d59fSDave May {
138403a1d59fSDave May   PetscErrorCode     ierr;
138503a1d59fSDave May   PetscViewer_Binary *binary = (PetscViewer_Binary*)v->data;
1386e0385b85SDave May 
138703a1d59fSDave May   PetscFunctionBegin;
1388da07bb01SDave May   if (!binary->setfromoptionscalled) { ierr = PetscViewerSetFromOptions(v);CHKERRQ(ierr); }
138903a1d59fSDave May 
1390e0385b85SDave May #if defined(PETSC_HAVE_MPIIO)
1391bc196f7cSDave May   if (binary->usempiio) {
1392e0385b85SDave May     ierr = PetscViewerFileSetUp_BinaryMPIIO(v);CHKERRQ(ierr);
1393e0385b85SDave May   } else {
1394e0385b85SDave May #endif
1395e0385b85SDave May     ierr = PetscViewerFileSetUp_Binary(v);CHKERRQ(ierr);
1396e0385b85SDave May #if defined(PETSC_HAVE_MPIIO)
1397e0385b85SDave May   }
1398e0385b85SDave May #endif
139903a1d59fSDave May   PetscFunctionReturn(0);
140003a1d59fSDave May }
140103a1d59fSDave May 
1402*22a8f86cSLisandro Dalcin static PetscErrorCode PetscViewerSetFromOptions_Binary(PetscOptionItems *PetscOptionsObject,PetscViewer viewer)
140303a1d59fSDave May {
140403a1d59fSDave May   PetscErrorCode     ierr;
1405*22a8f86cSLisandro Dalcin   PetscViewer_Binary *binary = (PetscViewer_Binary*)viewer->data;
1406d22fd6bcSDave May   char               defaultname[PETSC_MAX_PATH_LEN];
140703a1d59fSDave May   PetscBool          flg;
1408e0385b85SDave May 
140903a1d59fSDave May   PetscFunctionBegin;
1410*22a8f86cSLisandro Dalcin   if (viewer->setupcalled) PetscFunctionReturn(0);
141103a1d59fSDave May   ierr = PetscOptionsHead(PetscOptionsObject,"Binary PetscViewer Options");CHKERRQ(ierr);
1412d22fd6bcSDave May   ierr = PetscSNPrintf(defaultname,PETSC_MAX_PATH_LEN-1,"binaryoutput");CHKERRQ(ierr);
1413d22fd6bcSDave May   ierr = PetscOptionsString("-viewer_binary_filename","Specify filename","PetscViewerFileSetName",defaultname,defaultname,PETSC_MAX_PATH_LEN-1,&flg);CHKERRQ(ierr);
1414*22a8f86cSLisandro Dalcin   if (flg) { ierr = PetscViewerFileSetName_Binary(viewer,defaultname);CHKERRQ(ierr); }
1415*22a8f86cSLisandro Dalcin   ierr = PetscOptionsBool("-viewer_binary_skip_info","Skip writing/reading .info file","PetscViewerBinarySetSkipInfo",binary->skipinfo,&binary->skipinfo,NULL);CHKERRQ(ierr);
1416*22a8f86cSLisandro Dalcin   ierr = PetscOptionsBool("-viewer_binary_skip_options","Skip parsing vec load options","PetscViewerBinarySetSkipOptions",binary->skipoptions,&binary->skipoptions,NULL);CHKERRQ(ierr);
1417*22a8f86cSLisandro Dalcin   ierr = PetscOptionsBool("-viewer_binary_skip_header","Skip writing/reading header information","PetscViewerBinarySetSkipHeader",binary->skipheader,&binary->skipheader,NULL);CHKERRQ(ierr);
141803a1d59fSDave May #if defined(PETSC_HAVE_MPIIO)
1419*22a8f86cSLisandro Dalcin   ierr = PetscOptionsBool("-viewer_binary_mpiio","Use MPI-IO functionality to write/read binary file","PetscViewerBinarySetUseMPIIO",binary->usempiio,&binary->usempiio,NULL);CHKERRQ(ierr);
142034a9cc2cSBarry Smith #elif defined(PETSC_HAVE_MPIUNI)
142134a9cc2cSBarry Smith   ierr = PetscOptionsBool("-viewer_binary_mpiio","Use MPI-IO functionality to write/read binary file","PetscViewerBinarySetUseMPIIO",PETSC_FALSE,NULL,NULL);CHKERRQ(ierr);
142203a1d59fSDave May #endif
142303a1d59fSDave May   ierr = PetscOptionsTail();CHKERRQ(ierr);
1424bc196f7cSDave May   binary->setfromoptionscalled = PETSC_TRUE;
142503a1d59fSDave May   PetscFunctionReturn(0);
142603a1d59fSDave May }
142703a1d59fSDave May 
14288556b5ebSBarry Smith /*MC
14298556b5ebSBarry Smith    PETSCVIEWERBINARY - A viewer that saves to binary files
14308556b5ebSBarry Smith 
14318556b5ebSBarry Smith 
14328556b5ebSBarry Smith .seealso:  PetscViewerBinaryOpen(), PETSC_VIEWER_STDOUT_(),PETSC_VIEWER_STDOUT_SELF, PETSC_VIEWER_STDOUT_WORLD, PetscViewerCreate(), PetscViewerASCIIOpen(),
14338556b5ebSBarry Smith            PetscViewerMatlabOpen(), VecView(), DMView(), PetscViewerMatlabPutArray(), PETSCVIEWERASCII, PETSCVIEWERMATLAB, PETSCVIEWERDRAW,
143467918a83SBarry Smith            PetscViewerFileSetName(), PetscViewerFileSetMode(), PetscViewerFormat, PetscViewerType, PetscViewerSetType(),
143567918a83SBarry Smith            PetscViewerBinaryGetUseMPIIO(), PetscViewerBinarySetUseMPIIO()
14368556b5ebSBarry Smith 
14371b266c99SBarry Smith   Level: beginner
14381b266c99SBarry Smith 
14398556b5ebSBarry Smith M*/
14408556b5ebSBarry Smith 
14418cc058d9SJed Brown PETSC_EXTERN PetscErrorCode PetscViewerCreate_Binary(PetscViewer v)
14425c6c1daeSBarry Smith {
14435c6c1daeSBarry Smith   PetscErrorCode     ierr;
14445c6c1daeSBarry Smith   PetscViewer_Binary *vbinary;
14455c6c1daeSBarry Smith 
14465c6c1daeSBarry Smith   PetscFunctionBegin;
1447b00a9115SJed Brown   ierr                     = PetscNewLog(v,&vbinary);CHKERRQ(ierr);
14485c6c1daeSBarry Smith   v->data                  = (void*)vbinary;
144903a1d59fSDave May   v->ops->setfromoptions   = PetscViewerSetFromOptions_Binary;
14505c6c1daeSBarry Smith   v->ops->destroy          = PetscViewerDestroy_Binary;
14512bf49c77SBarry Smith   v->ops->view             = PetscViewerView_Binary;
1452c98fd787SBarry Smith   v->ops->setup            = PetscViewerSetUp_Binary;
1453c98fd787SBarry Smith   v->ops->flush            = NULL;
14545c6c1daeSBarry Smith   vbinary->fdes            = 0;
1455e8a65b7dSLisandro Dalcin #if defined(PETSC_HAVE_MPIIO)
1456e8a65b7dSLisandro Dalcin   vbinary->mfdes           = MPI_FILE_NULL;
1457e8a65b7dSLisandro Dalcin   vbinary->mfsub           = MPI_FILE_NULL;
1458e8a65b7dSLisandro Dalcin #endif
145902c9f0b5SLisandro Dalcin   vbinary->fdes_info       = NULL;
14605c6c1daeSBarry Smith   vbinary->skipinfo        = PETSC_FALSE;
14615c6c1daeSBarry Smith   vbinary->skipoptions     = PETSC_TRUE;
14625c6c1daeSBarry Smith   vbinary->skipheader      = PETSC_FALSE;
1463da07bb01SDave May   vbinary->setfromoptionscalled = PETSC_FALSE;
1464559f443fSBarry Smith   v->ops->getsubviewer     = PetscViewerGetSubViewer_Binary;
1465559f443fSBarry Smith   v->ops->restoresubviewer = PetscViewerRestoreSubViewer_Binary;
14661d641e7bSMichael Lange   v->ops->read             = PetscViewerBinaryRead;
14675c6c1daeSBarry Smith   vbinary->btype           = (PetscFileMode) -1;
14685c6c1daeSBarry Smith   vbinary->storecompressed = PETSC_FALSE;
1469f90597f1SStefano Zampini   vbinary->filename        = NULL;
1470f90597f1SStefano Zampini   vbinary->ogzfilename     = NULL;
14715c6c1daeSBarry Smith   vbinary->flowcontrol     = 256; /* seems a good number for Cray XT-5 */
14725c6c1daeSBarry Smith 
1473bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinaryGetFlowControl_C",PetscViewerBinaryGetFlowControl_Binary);CHKERRQ(ierr);
1474bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinarySetFlowControl_C",PetscViewerBinarySetFlowControl_Binary);CHKERRQ(ierr);
1475bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinarySetSkipHeader_C",PetscViewerBinarySetSkipHeader_Binary);CHKERRQ(ierr);
1476bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinaryGetSkipHeader_C",PetscViewerBinaryGetSkipHeader_Binary);CHKERRQ(ierr);
1477807ea322SDave May   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinaryGetSkipOptions_C",PetscViewerBinaryGetSkipOptions_Binary);CHKERRQ(ierr);
1478807ea322SDave May   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinarySetSkipOptions_C",PetscViewerBinarySetSkipOptions_Binary);CHKERRQ(ierr);
1479807ea322SDave May   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinaryGetSkipInfo_C",PetscViewerBinaryGetSkipInfo_Binary);CHKERRQ(ierr);
1480807ea322SDave May   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinarySetSkipInfo_C",PetscViewerBinarySetSkipInfo_Binary);CHKERRQ(ierr);
1481bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinaryGetInfoPointer_C",PetscViewerBinaryGetInfoPointer_Binary);CHKERRQ(ierr);
1482bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerFileSetName_C",PetscViewerFileSetName_Binary);CHKERRQ(ierr);
1483bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerFileSetMode_C",PetscViewerFileSetMode_Binary);CHKERRQ(ierr);
1484bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerFileGetMode_C",PetscViewerFileGetMode_Binary);CHKERRQ(ierr);
1485bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerFileGetName_C",PetscViewerFileGetName_Binary);CHKERRQ(ierr);
14865c6c1daeSBarry Smith #if defined(PETSC_HAVE_MPIIO)
1487bc196f7cSDave May   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinaryGetUseMPIIO_C",PetscViewerBinaryGetUseMPIIO_Binary);CHKERRQ(ierr);
1488bc196f7cSDave May   ierr = PetscObjectComposeFunction((PetscObject)v,"PetscViewerBinarySetUseMPIIO_C",PetscViewerBinarySetUseMPIIO_Binary);CHKERRQ(ierr);
14895c6c1daeSBarry Smith #endif
14905c6c1daeSBarry Smith   PetscFunctionReturn(0);
14915c6c1daeSBarry Smith }
14925c6c1daeSBarry Smith 
14935c6c1daeSBarry Smith /* ---------------------------------------------------------------------*/
14945c6c1daeSBarry Smith /*
14955c6c1daeSBarry Smith     The variable Petsc_Viewer_Binary_keyval is used to indicate an MPI attribute that
14965c6c1daeSBarry Smith   is attached to a communicator, in this case the attribute is a PetscViewer.
14975c6c1daeSBarry Smith */
1498d4c7638eSBarry Smith PetscMPIInt Petsc_Viewer_Binary_keyval = MPI_KEYVAL_INVALID;
14995c6c1daeSBarry Smith 
15005c6c1daeSBarry Smith /*@C
15015c6c1daeSBarry Smith      PETSC_VIEWER_BINARY_ - Creates a binary PetscViewer shared by all processors
15025c6c1daeSBarry Smith                      in a communicator.
15035c6c1daeSBarry Smith 
1504d083f849SBarry Smith      Collective
15055c6c1daeSBarry Smith 
15065c6c1daeSBarry Smith      Input Parameter:
15075c6c1daeSBarry Smith .    comm - the MPI communicator to share the binary PetscViewer
15085c6c1daeSBarry Smith 
15095c6c1daeSBarry Smith      Level: intermediate
15105c6c1daeSBarry Smith 
15115c6c1daeSBarry Smith    Options Database Keys:
15125c6c1daeSBarry Smith +    -viewer_binary_filename <name>
15135c6c1daeSBarry Smith .    -viewer_binary_skip_info
1514a2d7db39SDave May .    -viewer_binary_skip_options
1515a2d7db39SDave May .    -viewer_binary_skip_header
1516a2d7db39SDave May -    -viewer_binary_mpiio
15175c6c1daeSBarry Smith 
15185c6c1daeSBarry Smith    Environmental variables:
15195c6c1daeSBarry Smith -   PETSC_VIEWER_BINARY_FILENAME
15205c6c1daeSBarry Smith 
15215c6c1daeSBarry Smith      Notes:
15225c6c1daeSBarry Smith      Unlike almost all other PETSc routines, PETSC_VIEWER_BINARY_ does not return
15235c6c1daeSBarry Smith      an error code.  The binary PetscViewer is usually used in the form
15245c6c1daeSBarry Smith $       XXXView(XXX object,PETSC_VIEWER_BINARY_(comm));
15255c6c1daeSBarry Smith 
15265c6c1daeSBarry Smith .seealso: PETSC_VIEWER_BINARY_WORLD, PETSC_VIEWER_BINARY_SELF, PetscViewerBinaryOpen(), PetscViewerCreate(),
15275c6c1daeSBarry Smith           PetscViewerDestroy()
15285c6c1daeSBarry Smith @*/
15295c6c1daeSBarry Smith PetscViewer PETSC_VIEWER_BINARY_(MPI_Comm comm)
15305c6c1daeSBarry Smith {
15315c6c1daeSBarry Smith   PetscErrorCode ierr;
15325c6c1daeSBarry Smith   PetscBool      flg;
15335c6c1daeSBarry Smith   PetscViewer    viewer;
15345c6c1daeSBarry Smith   char           fname[PETSC_MAX_PATH_LEN];
15355c6c1daeSBarry Smith   MPI_Comm       ncomm;
15365c6c1daeSBarry Smith 
15375c6c1daeSBarry Smith   PetscFunctionBegin;
153802c9f0b5SLisandro Dalcin   ierr = PetscCommDuplicate(comm,&ncomm,NULL);if (ierr) {PetscError(PETSC_COMM_SELF,__LINE__,"PETSC_VIEWER_BINARY_",__FILE__,PETSC_ERR_PLIB,PETSC_ERROR_INITIAL," ");PetscFunctionReturn(NULL);}
15395c6c1daeSBarry Smith   if (Petsc_Viewer_Binary_keyval == MPI_KEYVAL_INVALID) {
154002c9f0b5SLisandro Dalcin     ierr = MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN,MPI_COMM_NULL_DELETE_FN,&Petsc_Viewer_Binary_keyval,NULL);
154102c9f0b5SLisandro Dalcin     if (ierr) {PetscError(PETSC_COMM_SELF,__LINE__,"PETSC_VIEWER_BINARY_",__FILE__,PETSC_ERR_PLIB,PETSC_ERROR_INITIAL," ");PetscFunctionReturn(NULL);}
15425c6c1daeSBarry Smith   }
154347435625SJed Brown   ierr = MPI_Comm_get_attr(ncomm,Petsc_Viewer_Binary_keyval,(void**)&viewer,(int*)&flg);
154402c9f0b5SLisandro Dalcin   if (ierr) {PetscError(PETSC_COMM_SELF,__LINE__,"PETSC_VIEWER_BINARY_",__FILE__,PETSC_ERR_PLIB,PETSC_ERROR_INITIAL," ");PetscFunctionReturn(NULL);}
15455c6c1daeSBarry Smith   if (!flg) { /* PetscViewer not yet created */
15465c6c1daeSBarry Smith     ierr = PetscOptionsGetenv(ncomm,"PETSC_VIEWER_BINARY_FILENAME",fname,PETSC_MAX_PATH_LEN,&flg);
154702c9f0b5SLisandro Dalcin     if (ierr) {PetscError(PETSC_COMM_SELF,__LINE__,"PETSC_VIEWER_BINARY_",__FILE__,PETSC_ERR_PLIB,PETSC_ERROR_INITIAL," ");PetscFunctionReturn(NULL);}
15485c6c1daeSBarry Smith     if (!flg) {
15495c6c1daeSBarry Smith       ierr = PetscStrcpy(fname,"binaryoutput");
155002c9f0b5SLisandro Dalcin       if (ierr) {PetscError(PETSC_COMM_SELF,__LINE__,"PETSC_VIEWER_BINARY_",__FILE__,PETSC_ERR_PLIB,PETSC_ERROR_INITIAL," ");PetscFunctionReturn(NULL);}
15515c6c1daeSBarry Smith     }
15525c6c1daeSBarry Smith     ierr = PetscViewerBinaryOpen(ncomm,fname,FILE_MODE_WRITE,&viewer);
155302c9f0b5SLisandro Dalcin     if (ierr) {PetscError(PETSC_COMM_SELF,__LINE__,"PETSC_VIEWER_BINARY_",__FILE__,PETSC_ERR_PLIB,PETSC_ERROR_INITIAL," ");PetscFunctionReturn(NULL);}
15545c6c1daeSBarry Smith     ierr = PetscObjectRegisterDestroy((PetscObject)viewer);
155502c9f0b5SLisandro Dalcin     if (ierr) {PetscError(PETSC_COMM_SELF,__LINE__,"PETSC_VIEWER_BINARY_",__FILE__,PETSC_ERR_PLIB,PETSC_ERROR_INITIAL," ");PetscFunctionReturn(NULL);}
155647435625SJed Brown     ierr = MPI_Comm_set_attr(ncomm,Petsc_Viewer_Binary_keyval,(void*)viewer);
155702c9f0b5SLisandro Dalcin     if (ierr) {PetscError(PETSC_COMM_SELF,__LINE__,"PETSC_VIEWER_BINARY_",__FILE__,PETSC_ERR_PLIB,PETSC_ERROR_INITIAL," ");PetscFunctionReturn(NULL);}
15585c6c1daeSBarry Smith   }
15595c6c1daeSBarry Smith   ierr = PetscCommDestroy(&ncomm);
156002c9f0b5SLisandro Dalcin   if (ierr) {PetscError(PETSC_COMM_SELF,__LINE__,"PETSC_VIEWER_BINARY_",__FILE__,PETSC_ERR_PLIB,PETSC_ERROR_INITIAL," ");PetscFunctionReturn(NULL);}
15615c6c1daeSBarry Smith   PetscFunctionReturn(viewer);
15625c6c1daeSBarry Smith }
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