1af0996ceSBarry Smith #include <petsc/private/viewerimpl.h> /*I "petscviewer.h" I*/ 25c6c1daeSBarry Smith 35c6c1daeSBarry Smith typedef struct { 45c6c1daeSBarry Smith int fdes; /* file descriptor, ignored if using MPI IO */ 55c6c1daeSBarry Smith #if defined(PETSC_HAVE_MPIIO) 6bc196f7cSDave May PetscBool usempiio; 75c6c1daeSBarry Smith MPI_File mfdes; /* ignored unless using MPI IO */ 8e8a65b7dSLisandro Dalcin MPI_File mfsub; /* subviewer support */ 95c6c1daeSBarry Smith MPI_Offset moff; 105c6c1daeSBarry Smith #endif 11cc843e7aSLisandro Dalcin char *filename; /* file name */ 12cc843e7aSLisandro Dalcin PetscFileMode filemode; /* read/write/append mode */ 135c6c1daeSBarry Smith FILE *fdes_info; /* optional file containing info on binary file*/ 145c6c1daeSBarry Smith PetscBool storecompressed; /* gzip the write binary file when closing it*/ 15f90597f1SStefano Zampini char *ogzfilename; /* gzip can be run after the filename has been updated */ 165c6c1daeSBarry Smith PetscBool skipinfo; /* Don't create info file for writing; don't use for reading */ 175c6c1daeSBarry Smith PetscBool skipoptions; /* don't use PETSc options database when loading */ 185c6c1daeSBarry Smith PetscInt flowcontrol; /* allow only <flowcontrol> messages outstanding at a time while doing IO */ 195c6c1daeSBarry Smith PetscBool skipheader; /* don't write header, only raw data */ 20a261c58fSBarry Smith PetscBool matlabheaderwritten; /* if format is PETSC_VIEWER_BINARY_MATLAB has the MATLAB .info header been written yet */ 21c98fd787SBarry Smith PetscBool setfromoptionscalled; 225c6c1daeSBarry Smith } PetscViewer_Binary; 235c6c1daeSBarry Smith 249371c9d4SSatish Balay static PetscErrorCode PetscViewerBinaryClearFunctionList(PetscViewer v) { 252e956fe4SStefano Zampini PetscFunctionBegin; 262e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinaryGetFlowControl_C", NULL)); 272e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinarySetFlowControl_C", NULL)); 282e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinaryGetSkipHeader_C", NULL)); 292e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinarySetSkipHeader_C", NULL)); 302e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinaryGetSkipOptions_C", NULL)); 312e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinarySetSkipOptions_C", NULL)); 322e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinaryGetSkipInfo_C", NULL)); 332e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinarySetSkipInfo_C", NULL)); 342e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinaryGetInfoPointer_C", NULL)); 352e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerFileGetName_C", NULL)); 362e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerFileSetName_C", NULL)); 372e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerFileGetMode_C", NULL)); 382e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerFileSetMode_C", NULL)); 392e956fe4SStefano Zampini #if defined(PETSC_HAVE_MPIIO) 402e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinaryGetUseMPIIO_C", NULL)); 412e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinarySetUseMPIIO_C", NULL)); 422e956fe4SStefano Zampini #endif 432e956fe4SStefano Zampini PetscFunctionReturn(0); 442e956fe4SStefano Zampini } 452e956fe4SStefano Zampini 46cc843e7aSLisandro Dalcin #if defined(PETSC_HAVE_MPIIO) 479371c9d4SSatish Balay static PetscErrorCode PetscViewerBinarySyncMPIIO(PetscViewer viewer) { 48cc843e7aSLisandro Dalcin PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 49cc843e7aSLisandro Dalcin 50cc843e7aSLisandro Dalcin PetscFunctionBegin; 51cc843e7aSLisandro Dalcin if (vbinary->filemode == FILE_MODE_READ) PetscFunctionReturn(0); 52*48a46eb9SPierre Jolivet if (vbinary->mfsub != MPI_FILE_NULL) PetscCallMPI(MPI_File_sync(vbinary->mfsub)); 53cc843e7aSLisandro Dalcin if (vbinary->mfdes != MPI_FILE_NULL) { 549566063dSJacob Faibussowitsch PetscCallMPI(MPI_Barrier(PetscObjectComm((PetscObject)viewer))); 559566063dSJacob Faibussowitsch PetscCallMPI(MPI_File_sync(vbinary->mfdes)); 56cc843e7aSLisandro Dalcin } 57cc843e7aSLisandro Dalcin PetscFunctionReturn(0); 58cc843e7aSLisandro Dalcin } 59cc843e7aSLisandro Dalcin #endif 60cc843e7aSLisandro Dalcin 619371c9d4SSatish Balay static PetscErrorCode PetscViewerGetSubViewer_Binary(PetscViewer viewer, MPI_Comm comm, PetscViewer *outviewer) { 62e8a65b7dSLisandro Dalcin PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 63cc843e7aSLisandro Dalcin PetscMPIInt rank; 645c6c1daeSBarry Smith 655c6c1daeSBarry Smith PetscFunctionBegin; 669566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 67e8a65b7dSLisandro Dalcin 68e8a65b7dSLisandro Dalcin /* Return subviewer in process zero */ 699566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)viewer), &rank)); 70dd400576SPatrick Sanan if (rank == 0) { 71e5afcf28SBarry Smith PetscMPIInt flg; 72e5afcf28SBarry Smith 739566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, comm, &flg)); 74cc73adaaSBarry Smith PetscCheck(flg == MPI_IDENT || flg == MPI_CONGRUENT, PETSC_COMM_SELF, PETSC_ERR_SUP, "PetscViewerGetSubViewer() for PETSCVIEWERBINARY requires a singleton MPI_Comm"); 759566063dSJacob Faibussowitsch PetscCall(PetscViewerCreate(comm, outviewer)); 769566063dSJacob Faibussowitsch PetscCall(PetscViewerSetType(*outviewer, PETSCVIEWERBINARY)); 779566063dSJacob Faibussowitsch PetscCall(PetscMemcpy((*outviewer)->data, vbinary, sizeof(PetscViewer_Binary))); 7812f4c3a9SLisandro Dalcin (*outviewer)->setupcalled = PETSC_TRUE; 7996509d17SLisandro Dalcin } else { 8096509d17SLisandro Dalcin *outviewer = NULL; 8196509d17SLisandro Dalcin } 82e8a65b7dSLisandro Dalcin 83e8a65b7dSLisandro Dalcin #if defined(PETSC_HAVE_MPIIO) 84e8a65b7dSLisandro Dalcin if (vbinary->usempiio && *outviewer) { 85e8a65b7dSLisandro Dalcin PetscViewer_Binary *obinary = (PetscViewer_Binary *)(*outviewer)->data; 86e8a65b7dSLisandro Dalcin /* Parent viewer opens a new MPI file handle on PETSC_COMM_SELF and keeps track of it for future reuse */ 87e8a65b7dSLisandro Dalcin if (vbinary->mfsub == MPI_FILE_NULL) { 88e8a65b7dSLisandro Dalcin int amode; 89cc843e7aSLisandro Dalcin switch (vbinary->filemode) { 90e8a65b7dSLisandro Dalcin case FILE_MODE_READ: amode = MPI_MODE_RDONLY; break; 91e8a65b7dSLisandro Dalcin case FILE_MODE_WRITE: amode = MPI_MODE_WRONLY; break; 9222a8f86cSLisandro Dalcin case FILE_MODE_APPEND: amode = MPI_MODE_WRONLY; break; 9398921bdaSJacob Faibussowitsch default: SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unsupported file mode %s", PetscFileModes[vbinary->filemode]); 94e8a65b7dSLisandro Dalcin } 959566063dSJacob Faibussowitsch PetscCallMPI(MPI_File_open(PETSC_COMM_SELF, vbinary->filename, amode, MPI_INFO_NULL, &vbinary->mfsub)); 96e8a65b7dSLisandro Dalcin } 97e8a65b7dSLisandro Dalcin /* Subviewer gets the MPI file handle on PETSC_COMM_SELF */ 98e8a65b7dSLisandro Dalcin obinary->mfdes = vbinary->mfsub; 99e8a65b7dSLisandro Dalcin obinary->mfsub = MPI_FILE_NULL; 100e8a65b7dSLisandro Dalcin obinary->moff = vbinary->moff; 101e8a65b7dSLisandro Dalcin } 102e8a65b7dSLisandro Dalcin #endif 103cc843e7aSLisandro Dalcin 104cc843e7aSLisandro Dalcin #if defined(PETSC_HAVE_MPIIO) 1059566063dSJacob Faibussowitsch PetscCall(PetscViewerBinarySyncMPIIO(viewer)); 106cc843e7aSLisandro Dalcin #endif 1075c6c1daeSBarry Smith PetscFunctionReturn(0); 1085c6c1daeSBarry Smith } 1095c6c1daeSBarry Smith 1109371c9d4SSatish Balay static PetscErrorCode PetscViewerRestoreSubViewer_Binary(PetscViewer viewer, MPI_Comm comm, PetscViewer *outviewer) { 111e8a65b7dSLisandro Dalcin PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 112cc843e7aSLisandro Dalcin PetscMPIInt rank; 113e8a65b7dSLisandro Dalcin #if defined(PETSC_HAVE_MPIIO) 114e8a65b7dSLisandro Dalcin MPI_Offset moff = 0; 115e8a65b7dSLisandro Dalcin #endif 1165c6c1daeSBarry Smith 1175c6c1daeSBarry Smith PetscFunctionBegin; 1189566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)viewer), &rank)); 119c5853193SPierre Jolivet PetscCheck(rank == 0 || !*outviewer, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Subviewer not obtained from viewer"); 120e8a65b7dSLisandro Dalcin 121e8a65b7dSLisandro Dalcin #if defined(PETSC_HAVE_MPIIO) 122e8a65b7dSLisandro Dalcin if (vbinary->usempiio && *outviewer) { 123e8a65b7dSLisandro Dalcin PetscViewer_Binary *obinary = (PetscViewer_Binary *)(*outviewer)->data; 12408401ef6SPierre Jolivet PetscCheck(obinary->mfdes == vbinary->mfsub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Subviewer not obtained from viewer"); 1259566063dSJacob Faibussowitsch if (obinary->mfsub != MPI_FILE_NULL) PetscCallMPI(MPI_File_close(&obinary->mfsub)); 126e8a65b7dSLisandro Dalcin moff = obinary->moff; 127e8a65b7dSLisandro Dalcin } 128e8a65b7dSLisandro Dalcin #endif 129e8a65b7dSLisandro Dalcin 130e8a65b7dSLisandro Dalcin if (*outviewer) { 131e8a65b7dSLisandro Dalcin PetscViewer_Binary *obinary = (PetscViewer_Binary *)(*outviewer)->data; 13208401ef6SPierre Jolivet PetscCheck(obinary->fdes == vbinary->fdes, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Subviewer not obtained from viewer"); 1339566063dSJacob Faibussowitsch PetscCall(PetscFree((*outviewer)->data)); 1342e956fe4SStefano Zampini PetscCall(PetscViewerBinaryClearFunctionList(*outviewer)); 1359566063dSJacob Faibussowitsch PetscCall(PetscHeaderDestroy(outviewer)); 1365c6c1daeSBarry Smith } 137e8a65b7dSLisandro Dalcin 138e8a65b7dSLisandro Dalcin #if defined(PETSC_HAVE_MPIIO) 139e8a65b7dSLisandro Dalcin if (vbinary->usempiio) { 140e8a65b7dSLisandro Dalcin PetscInt64 ioff = (PetscInt64)moff; /* We could use MPI_OFFSET datatype (requires MPI 2.2) */ 1419566063dSJacob Faibussowitsch PetscCallMPI(MPI_Bcast(&ioff, 1, MPIU_INT64, 0, PetscObjectComm((PetscObject)viewer))); 142e8a65b7dSLisandro Dalcin vbinary->moff = (MPI_Offset)ioff; 143e8a65b7dSLisandro Dalcin } 144e8a65b7dSLisandro Dalcin #endif 145cc843e7aSLisandro Dalcin 146cc843e7aSLisandro Dalcin #if defined(PETSC_HAVE_MPIIO) 1479566063dSJacob Faibussowitsch PetscCall(PetscViewerBinarySyncMPIIO(viewer)); 148cc843e7aSLisandro Dalcin #endif 1495c6c1daeSBarry Smith PetscFunctionReturn(0); 1505c6c1daeSBarry Smith } 1515c6c1daeSBarry Smith 1525c6c1daeSBarry Smith #if defined(PETSC_HAVE_MPIIO) 1535c6c1daeSBarry Smith /*@C 15485b8072bSPatrick Sanan PetscViewerBinaryGetMPIIOOffset - Gets the current global offset that should be passed to `MPI_File_set_view()` or `MPI_File_{write|read}_at[_all]()` 1555c6c1daeSBarry Smith 1565c6c1daeSBarry Smith Not Collective 1575c6c1daeSBarry Smith 1585c6c1daeSBarry Smith Input Parameter: 15985b8072bSPatrick Sanan . viewer - PetscViewer context, obtained from `PetscViewerBinaryOpen()` 1605c6c1daeSBarry Smith 1615c6c1daeSBarry Smith Output Parameter: 16222a8f86cSLisandro Dalcin . off - the current global offset 1635c6c1daeSBarry Smith 1645c6c1daeSBarry Smith Level: advanced 1655c6c1daeSBarry Smith 1665c6c1daeSBarry Smith Fortran Note: 1675c6c1daeSBarry Smith This routine is not supported in Fortran. 1685c6c1daeSBarry Smith 16985b8072bSPatrick Sanan Use `PetscViewerBinaryAddMPIIOOffset()` to increase this value after you have written a view. 1705c6c1daeSBarry Smith 171db781477SPatrick Sanan .seealso: `PetscViewerBinaryOpen()`, `PetscViewerBinaryGetInfoPointer()`, `PetscViewerBinaryGetUseMPIIO()`, `PetscViewerBinarySetUseMPIIO()`, `PetscViewerBinaryAddMPIIOOffset()` 1725c6c1daeSBarry Smith @*/ 1739371c9d4SSatish Balay PetscErrorCode PetscViewerBinaryGetMPIIOOffset(PetscViewer viewer, MPI_Offset *off) { 17422a8f86cSLisandro Dalcin PetscViewer_Binary *vbinary; 1755c6c1daeSBarry Smith 1765c6c1daeSBarry Smith PetscFunctionBegin; 17722a8f86cSLisandro Dalcin PetscValidHeaderSpecificType(viewer, PETSC_VIEWER_CLASSID, 1, PETSCVIEWERBINARY); 17822a8f86cSLisandro Dalcin PetscValidPointer(off, 2); 17922a8f86cSLisandro Dalcin vbinary = (PetscViewer_Binary *)viewer->data; 1805c6c1daeSBarry Smith *off = vbinary->moff; 1815c6c1daeSBarry Smith PetscFunctionReturn(0); 1825c6c1daeSBarry Smith } 1835c6c1daeSBarry Smith 1845c6c1daeSBarry Smith /*@C 18522a8f86cSLisandro Dalcin PetscViewerBinaryAddMPIIOOffset - Adds to the current global offset 1865c6c1daeSBarry Smith 18722a8f86cSLisandro Dalcin Logically Collective 1885c6c1daeSBarry Smith 1895c6c1daeSBarry Smith Input Parameters: 1905c6c1daeSBarry Smith + viewer - PetscViewer context, obtained from PetscViewerBinaryOpen() 19122a8f86cSLisandro Dalcin - off - the addition to the global offset 1925c6c1daeSBarry Smith 1935c6c1daeSBarry Smith Level: advanced 1945c6c1daeSBarry Smith 1955c6c1daeSBarry Smith Fortran Note: 1965c6c1daeSBarry Smith This routine is not supported in Fortran. 1975c6c1daeSBarry Smith 19885b8072bSPatrick Sanan Use `PetscViewerBinaryGetMPIIOOffset()` to get the value that you should pass to `MPI_File_set_view()` or `MPI_File_{write|read}_at[_all]()` 1995c6c1daeSBarry Smith 200c2e3fba1SPatrick Sanan .seealso: `PetscViewerBinaryOpen()`, `PetscViewerBinaryGetInfoPointer()`, `PetscViewerBinaryGetUseMPIIO()`, `PetscViewerBinarySetUseMPIIO()`, `PetscViewerBinaryGetMPIIOOffset()` 2015c6c1daeSBarry Smith @*/ 2029371c9d4SSatish Balay PetscErrorCode PetscViewerBinaryAddMPIIOOffset(PetscViewer viewer, MPI_Offset off) { 20322a8f86cSLisandro Dalcin PetscViewer_Binary *vbinary; 2045c6c1daeSBarry Smith 2055c6c1daeSBarry Smith PetscFunctionBegin; 20622a8f86cSLisandro Dalcin PetscValidHeaderSpecificType(viewer, PETSC_VIEWER_CLASSID, 1, PETSCVIEWERBINARY); 20722a8f86cSLisandro Dalcin PetscValidLogicalCollectiveInt(viewer, (PetscInt)off, 2); 20822a8f86cSLisandro Dalcin vbinary = (PetscViewer_Binary *)viewer->data; 2095c6c1daeSBarry Smith vbinary->moff += off; 2105c6c1daeSBarry Smith PetscFunctionReturn(0); 2115c6c1daeSBarry Smith } 2125c6c1daeSBarry Smith 2135c6c1daeSBarry Smith /*@C 2145c6c1daeSBarry Smith PetscViewerBinaryGetMPIIODescriptor - Extracts the MPI IO file descriptor from a PetscViewer. 2155c6c1daeSBarry Smith 2165c6c1daeSBarry Smith Not Collective 2175c6c1daeSBarry Smith 2185c6c1daeSBarry Smith Input Parameter: 2195c6c1daeSBarry Smith . viewer - PetscViewer context, obtained from PetscViewerBinaryOpen() 2205c6c1daeSBarry Smith 2215c6c1daeSBarry Smith Output Parameter: 2225c6c1daeSBarry Smith . fdes - file descriptor 2235c6c1daeSBarry Smith 2245c6c1daeSBarry Smith Level: advanced 2255c6c1daeSBarry Smith 2265c6c1daeSBarry Smith Fortran Note: 2275c6c1daeSBarry Smith This routine is not supported in Fortran. 2285c6c1daeSBarry Smith 229c2e3fba1SPatrick Sanan .seealso: `PetscViewerBinaryOpen()`, `PetscViewerBinaryGetInfoPointer()`, `PetscViewerBinaryGetUseMPIIO()`, `PetscViewerBinarySetUseMPIIO()`, `PetscViewerBinaryGetMPIIOOffset()` 2305c6c1daeSBarry Smith @*/ 2319371c9d4SSatish Balay PetscErrorCode PetscViewerBinaryGetMPIIODescriptor(PetscViewer viewer, MPI_File *fdes) { 23222a8f86cSLisandro Dalcin PetscViewer_Binary *vbinary; 2335c6c1daeSBarry Smith 2345c6c1daeSBarry Smith PetscFunctionBegin; 23522a8f86cSLisandro Dalcin PetscValidHeaderSpecificType(viewer, PETSC_VIEWER_CLASSID, 1, PETSCVIEWERBINARY); 23622a8f86cSLisandro Dalcin PetscValidPointer(fdes, 2); 2379566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 23822a8f86cSLisandro Dalcin vbinary = (PetscViewer_Binary *)viewer->data; 2395c6c1daeSBarry Smith *fdes = vbinary->mfdes; 2405c6c1daeSBarry Smith PetscFunctionReturn(0); 2415c6c1daeSBarry Smith } 242cc843e7aSLisandro Dalcin #endif 2435c6c1daeSBarry Smith 244cc843e7aSLisandro Dalcin /*@ 245cc843e7aSLisandro Dalcin PetscViewerBinarySetUseMPIIO - Sets a binary viewer to use MPI-IO for reading/writing. Must be called 246cc843e7aSLisandro Dalcin before PetscViewerFileSetName() 247cc843e7aSLisandro Dalcin 248cc843e7aSLisandro Dalcin Logically Collective on PetscViewer 249cc843e7aSLisandro Dalcin 250cc843e7aSLisandro Dalcin Input Parameters: 251cc843e7aSLisandro Dalcin + viewer - the PetscViewer; must be a binary 252cc843e7aSLisandro Dalcin - use - PETSC_TRUE means MPI-IO will be used 253cc843e7aSLisandro Dalcin 254cc843e7aSLisandro Dalcin Options Database: 255cc843e7aSLisandro Dalcin -viewer_binary_mpiio : Flag for using MPI-IO 256cc843e7aSLisandro Dalcin 257cc843e7aSLisandro Dalcin Level: advanced 258cc843e7aSLisandro Dalcin 259db781477SPatrick Sanan .seealso: `PetscViewerFileSetMode()`, `PetscViewerCreate()`, `PetscViewerSetType()`, `PetscViewerBinaryOpen()`, 260db781477SPatrick Sanan `PetscViewerBinaryGetUseMPIIO()` 261cc843e7aSLisandro Dalcin 262cc843e7aSLisandro Dalcin @*/ 2639371c9d4SSatish Balay PetscErrorCode PetscViewerBinarySetUseMPIIO(PetscViewer viewer, PetscBool use) { 264a8aae444SDave May PetscFunctionBegin; 265cc843e7aSLisandro Dalcin PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 1); 266cc843e7aSLisandro Dalcin PetscValidLogicalCollectiveBool(viewer, use, 2); 267cac4c232SBarry Smith PetscTryMethod(viewer, "PetscViewerBinarySetUseMPIIO_C", (PetscViewer, PetscBool), (viewer, use)); 268cc843e7aSLisandro Dalcin PetscFunctionReturn(0); 269cc843e7aSLisandro Dalcin } 270cc843e7aSLisandro Dalcin 271cc843e7aSLisandro Dalcin #if defined(PETSC_HAVE_MPIIO) 2729371c9d4SSatish Balay static PetscErrorCode PetscViewerBinarySetUseMPIIO_Binary(PetscViewer viewer, PetscBool use) { 273cc843e7aSLisandro Dalcin PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 274cc843e7aSLisandro Dalcin PetscFunctionBegin; 275cc73adaaSBarry Smith PetscCheck(!viewer->setupcalled || vbinary->usempiio == use, PetscObjectComm((PetscObject)viewer), PETSC_ERR_ORDER, "Cannot change MPIIO to %s after setup", PetscBools[use]); 276cc843e7aSLisandro Dalcin vbinary->usempiio = use; 277a8aae444SDave May PetscFunctionReturn(0); 278a8aae444SDave May } 279a8aae444SDave May #endif 280a8aae444SDave May 281cc843e7aSLisandro Dalcin /*@ 282bc196f7cSDave May PetscViewerBinaryGetUseMPIIO - Returns PETSC_TRUE if the binary viewer uses MPI-IO. 2835c6c1daeSBarry Smith 2845c6c1daeSBarry Smith Not Collective 2855c6c1daeSBarry Smith 2865c6c1daeSBarry Smith Input Parameter: 2875c6c1daeSBarry Smith . viewer - PetscViewer context, obtained from PetscViewerBinaryOpen() 2885c6c1daeSBarry Smith 2895c6c1daeSBarry Smith Output Parameter: 290d8d19677SJose E. Roman . use - PETSC_TRUE if MPI-IO is being used 2915c6c1daeSBarry Smith 2925c6c1daeSBarry Smith Options Database: 2935c6c1daeSBarry Smith -viewer_binary_mpiio : Flag for using MPI-IO 2945c6c1daeSBarry Smith 2955c6c1daeSBarry Smith Level: advanced 2965c6c1daeSBarry Smith 297bc196f7cSDave May Note: 298bc196f7cSDave May If MPI-IO is not available, this function will always return PETSC_FALSE 299bc196f7cSDave May 3005c6c1daeSBarry Smith Fortran Note: 3015c6c1daeSBarry Smith This routine is not supported in Fortran. 3025c6c1daeSBarry Smith 303db781477SPatrick Sanan .seealso: `PetscViewerBinaryOpen()`, `PetscViewerBinaryGetInfoPointer()`, `PetscViewerBinarySetUseMPIIO()`, `PetscViewerBinaryGetMPIIOOffset()` 3045c6c1daeSBarry Smith @*/ 3059371c9d4SSatish Balay PetscErrorCode PetscViewerBinaryGetUseMPIIO(PetscViewer viewer, PetscBool *use) { 3065c6c1daeSBarry Smith PetscFunctionBegin; 307cc843e7aSLisandro Dalcin PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 1); 308cc843e7aSLisandro Dalcin PetscValidBoolPointer(use, 2); 309cc843e7aSLisandro Dalcin *use = PETSC_FALSE; 310cac4c232SBarry Smith PetscTryMethod(viewer, "PetscViewerBinaryGetUseMPIIO_C", (PetscViewer, PetscBool *), (viewer, use)); 3115c6c1daeSBarry Smith PetscFunctionReturn(0); 3125c6c1daeSBarry Smith } 3135c6c1daeSBarry Smith 314cc843e7aSLisandro Dalcin #if defined(PETSC_HAVE_MPIIO) 3159371c9d4SSatish Balay static PetscErrorCode PetscViewerBinaryGetUseMPIIO_Binary(PetscViewer viewer, PetscBool *use) { 3165c6c1daeSBarry Smith PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 3175c6c1daeSBarry Smith 3185c6c1daeSBarry Smith PetscFunctionBegin; 319cc843e7aSLisandro Dalcin *use = vbinary->usempiio; 320cc843e7aSLisandro Dalcin PetscFunctionReturn(0); 321cc843e7aSLisandro Dalcin } 322cc843e7aSLisandro Dalcin #endif 323cc843e7aSLisandro Dalcin 324cc843e7aSLisandro Dalcin /*@ 325cc843e7aSLisandro Dalcin PetscViewerBinarySetFlowControl - Sets how many messages are allowed to outstanding at the same time during parallel IO reads/writes 326cc843e7aSLisandro Dalcin 327cc843e7aSLisandro Dalcin Not Collective 328cc843e7aSLisandro Dalcin 329d8d19677SJose E. Roman Input Parameters: 330cc843e7aSLisandro Dalcin + viewer - PetscViewer context, obtained from PetscViewerBinaryOpen() 331cc843e7aSLisandro Dalcin - fc - the number of messages, defaults to 256 if this function was not called 332cc843e7aSLisandro Dalcin 333cc843e7aSLisandro Dalcin Level: advanced 334cc843e7aSLisandro Dalcin 335c2e3fba1SPatrick Sanan .seealso: `PetscViewerBinaryOpen()`, `PetscViewerBinaryGetInfoPointer()`, `PetscViewerBinaryGetFlowControl()` 336cc843e7aSLisandro Dalcin 337cc843e7aSLisandro Dalcin @*/ 3389371c9d4SSatish Balay PetscErrorCode PetscViewerBinarySetFlowControl(PetscViewer viewer, PetscInt fc) { 339cc843e7aSLisandro Dalcin PetscFunctionBegin; 340cc843e7aSLisandro Dalcin PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 1); 341cc843e7aSLisandro Dalcin PetscValidLogicalCollectiveInt(viewer, fc, 2); 342cac4c232SBarry Smith PetscTryMethod(viewer, "PetscViewerBinarySetFlowControl_C", (PetscViewer, PetscInt), (viewer, fc)); 3435c6c1daeSBarry Smith PetscFunctionReturn(0); 3445c6c1daeSBarry Smith } 3455c6c1daeSBarry Smith 3469371c9d4SSatish Balay static PetscErrorCode PetscViewerBinarySetFlowControl_Binary(PetscViewer viewer, PetscInt fc) { 347cc843e7aSLisandro Dalcin PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 348cc843e7aSLisandro Dalcin 349cc843e7aSLisandro Dalcin PetscFunctionBegin; 35008401ef6SPierre Jolivet PetscCheck(fc > 1, PetscObjectComm((PetscObject)viewer), PETSC_ERR_ARG_OUTOFRANGE, "Flow control count must be greater than 1, %" PetscInt_FMT " was set", fc); 351cc843e7aSLisandro Dalcin vbinary->flowcontrol = fc; 352cc843e7aSLisandro Dalcin PetscFunctionReturn(0); 353cc843e7aSLisandro Dalcin } 354cc843e7aSLisandro Dalcin 355cc843e7aSLisandro Dalcin /*@ 3565c6c1daeSBarry Smith PetscViewerBinaryGetFlowControl - Returns how many messages are allowed to outstanding at the same time during parallel IO reads/writes 3575c6c1daeSBarry Smith 3585c6c1daeSBarry Smith Not Collective 3595c6c1daeSBarry Smith 3605c6c1daeSBarry Smith Input Parameter: 3615c6c1daeSBarry Smith . viewer - PetscViewer context, obtained from PetscViewerBinaryOpen() 3625c6c1daeSBarry Smith 3635c6c1daeSBarry Smith Output Parameter: 3645c6c1daeSBarry Smith . fc - the number of messages 3655c6c1daeSBarry Smith 3665c6c1daeSBarry Smith Level: advanced 3675c6c1daeSBarry Smith 368c2e3fba1SPatrick Sanan .seealso: `PetscViewerBinaryOpen()`, `PetscViewerBinaryGetInfoPointer()`, `PetscViewerBinarySetFlowControl()` 3695c6c1daeSBarry Smith 3705c6c1daeSBarry Smith @*/ 3719371c9d4SSatish Balay PetscErrorCode PetscViewerBinaryGetFlowControl(PetscViewer viewer, PetscInt *fc) { 3725c6c1daeSBarry Smith PetscFunctionBegin; 373cc843e7aSLisandro Dalcin PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 1); 374cc843e7aSLisandro Dalcin PetscValidIntPointer(fc, 2); 375cac4c232SBarry Smith PetscUseMethod(viewer, "PetscViewerBinaryGetFlowControl_C", (PetscViewer, PetscInt *), (viewer, fc)); 3765c6c1daeSBarry Smith PetscFunctionReturn(0); 3775c6c1daeSBarry Smith } 3785c6c1daeSBarry Smith 3799371c9d4SSatish Balay static PetscErrorCode PetscViewerBinaryGetFlowControl_Binary(PetscViewer viewer, PetscInt *fc) { 3805c6c1daeSBarry Smith PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 3815c6c1daeSBarry Smith 3825c6c1daeSBarry Smith PetscFunctionBegin; 383cc843e7aSLisandro Dalcin *fc = vbinary->flowcontrol; 3845c6c1daeSBarry Smith PetscFunctionReturn(0); 3855c6c1daeSBarry Smith } 3865c6c1daeSBarry Smith 3875c6c1daeSBarry Smith /*@C 3885c6c1daeSBarry Smith PetscViewerBinaryGetDescriptor - Extracts the file descriptor from a PetscViewer. 3895c6c1daeSBarry Smith 3905872f025SBarry Smith Collective On PetscViewer 3915c6c1daeSBarry Smith 3925c6c1daeSBarry Smith Input Parameter: 3935c6c1daeSBarry Smith . viewer - PetscViewer context, obtained from PetscViewerBinaryOpen() 3945c6c1daeSBarry Smith 3955c6c1daeSBarry Smith Output Parameter: 3965c6c1daeSBarry Smith . fdes - file descriptor 3975c6c1daeSBarry Smith 3985c6c1daeSBarry Smith Level: advanced 3995c6c1daeSBarry Smith 4005c6c1daeSBarry Smith Notes: 4015c6c1daeSBarry Smith For writable binary PetscViewers, the descriptor will only be valid for the 4025c6c1daeSBarry Smith first processor in the communicator that shares the PetscViewer. For readable 4035c6c1daeSBarry Smith files it will only be valid on nodes that have the file. If node 0 does not 4045c6c1daeSBarry Smith have the file it generates an error even if another node does have the file. 4055c6c1daeSBarry Smith 4065c6c1daeSBarry Smith Fortran Note: 4075c6c1daeSBarry Smith This routine is not supported in Fortran. 4085c6c1daeSBarry Smith 40995452b02SPatrick Sanan Developer Notes: 41095452b02SPatrick Sanan This must be called on all processes because Dave May changed 4115872f025SBarry Smith the source code that this may be trigger a PetscViewerSetUp() call if it was not previously triggered. 4125872f025SBarry Smith 413c2e3fba1SPatrick Sanan .seealso: `PetscViewerBinaryOpen()`, `PetscViewerBinaryGetInfoPointer()` 4145c6c1daeSBarry Smith @*/ 4159371c9d4SSatish Balay PetscErrorCode PetscViewerBinaryGetDescriptor(PetscViewer viewer, int *fdes) { 41622a8f86cSLisandro Dalcin PetscViewer_Binary *vbinary; 4175c6c1daeSBarry Smith 4185c6c1daeSBarry Smith PetscFunctionBegin; 41922a8f86cSLisandro Dalcin PetscValidHeaderSpecificType(viewer, PETSC_VIEWER_CLASSID, 1, PETSCVIEWERBINARY); 42022a8f86cSLisandro Dalcin PetscValidPointer(fdes, 2); 4219566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 42222a8f86cSLisandro Dalcin vbinary = (PetscViewer_Binary *)viewer->data; 4235c6c1daeSBarry Smith *fdes = vbinary->fdes; 4245c6c1daeSBarry Smith PetscFunctionReturn(0); 4255c6c1daeSBarry Smith } 4265c6c1daeSBarry Smith 4275c6c1daeSBarry Smith /*@ 4285c6c1daeSBarry Smith PetscViewerBinarySkipInfo - Binary file will not have .info file created with it 4295c6c1daeSBarry Smith 4305c6c1daeSBarry Smith Not Collective 4315c6c1daeSBarry Smith 432fd292e60Sprj- Input Parameter: 4335c6c1daeSBarry Smith . viewer - PetscViewer context, obtained from PetscViewerCreate() 4345c6c1daeSBarry Smith 4355c6c1daeSBarry Smith Options Database Key: 43610699b91SBarry Smith . -viewer_binary_skip_info - true indicates do not generate .info file 4375c6c1daeSBarry Smith 4385c6c1daeSBarry Smith Level: advanced 4395c6c1daeSBarry Smith 44095452b02SPatrick Sanan Notes: 44195452b02SPatrick Sanan This must be called after PetscViewerSetType(). If you use PetscViewerBinaryOpen() then 4425c6c1daeSBarry Smith you can only skip the info file with the -viewer_binary_skip_info flag. To use the function you must open the 443a2d7db39SDave May viewer with PetscViewerCreate(), PetscViewerSetType(), PetscViewerBinarySkipInfo(). 4445c6c1daeSBarry Smith 4455c6c1daeSBarry Smith The .info contains meta information about the data in the binary file, for example the block size if it was 4465c6c1daeSBarry Smith set for a vector or matrix. 4475c6c1daeSBarry Smith 448db781477SPatrick Sanan .seealso: `PetscViewerBinaryOpen()`, `PetscViewerBinaryGetDescriptor()`, `PetscViewerBinarySetSkipOptions()`, 449db781477SPatrick Sanan `PetscViewerBinaryGetSkipOptions()`, `PetscViewerBinaryGetSkipInfo()` 4505c6c1daeSBarry Smith @*/ 4519371c9d4SSatish Balay PetscErrorCode PetscViewerBinarySkipInfo(PetscViewer viewer) { 4525c6c1daeSBarry Smith PetscFunctionBegin; 4539566063dSJacob Faibussowitsch PetscCall(PetscViewerBinarySetSkipInfo(viewer, PETSC_TRUE)); 454807ea322SDave May PetscFunctionReturn(0); 455807ea322SDave May } 456807ea322SDave May 457807ea322SDave May /*@ 458807ea322SDave May PetscViewerBinarySetSkipInfo - Binary file will not have .info file created with it 459807ea322SDave May 460807ea322SDave May Not Collective 461807ea322SDave May 462d8d19677SJose E. Roman Input Parameters: 463cc843e7aSLisandro Dalcin + viewer - PetscViewer context, obtained from PetscViewerCreate() 464cc843e7aSLisandro Dalcin - skip - PETSC_TRUE implies the .info file will not be generated 465807ea322SDave May 466807ea322SDave May Options Database Key: 46710699b91SBarry Smith . -viewer_binary_skip_info - true indicates do not generate .info file 468807ea322SDave May 469807ea322SDave May Level: advanced 470807ea322SDave May 471db781477SPatrick Sanan .seealso: `PetscViewerBinaryOpen()`, `PetscViewerBinaryGetDescriptor()`, `PetscViewerBinarySetSkipOptions()`, 472db781477SPatrick Sanan `PetscViewerBinaryGetSkipOptions()`, `PetscViewerBinaryGetSkipInfo()` 473807ea322SDave May @*/ 4749371c9d4SSatish Balay PetscErrorCode PetscViewerBinarySetSkipInfo(PetscViewer viewer, PetscBool skip) { 475807ea322SDave May PetscFunctionBegin; 476cc843e7aSLisandro Dalcin PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 1); 477cc843e7aSLisandro Dalcin PetscValidLogicalCollectiveBool(viewer, skip, 2); 478cac4c232SBarry Smith PetscTryMethod(viewer, "PetscViewerBinarySetSkipInfo_C", (PetscViewer, PetscBool), (viewer, skip)); 479807ea322SDave May PetscFunctionReturn(0); 480807ea322SDave May } 481807ea322SDave May 4829371c9d4SSatish Balay static PetscErrorCode PetscViewerBinarySetSkipInfo_Binary(PetscViewer viewer, PetscBool skip) { 483807ea322SDave May PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 484807ea322SDave May 485807ea322SDave May PetscFunctionBegin; 486cc843e7aSLisandro Dalcin vbinary->skipinfo = skip; 487807ea322SDave May PetscFunctionReturn(0); 488807ea322SDave May } 489807ea322SDave May 490807ea322SDave May /*@ 491807ea322SDave May PetscViewerBinaryGetSkipInfo - check if viewer wrote a .info file 492807ea322SDave May 493807ea322SDave May Not Collective 494807ea322SDave May 495807ea322SDave May Input Parameter: 496807ea322SDave May . viewer - PetscViewer context, obtained from PetscViewerBinaryOpen() 497807ea322SDave May 498807ea322SDave May Output Parameter: 499807ea322SDave May . skip - PETSC_TRUE implies the .info file was not generated 500807ea322SDave May 501807ea322SDave May Level: advanced 502807ea322SDave May 50395452b02SPatrick Sanan Notes: 50495452b02SPatrick Sanan This must be called after PetscViewerSetType() 505807ea322SDave May 506db781477SPatrick Sanan .seealso: `PetscViewerBinaryOpen()`, `PetscViewerBinaryGetDescriptor()`, `PetscViewerBinarySkipInfo()`, 507db781477SPatrick Sanan `PetscViewerBinarySetSkipOptions()`, `PetscViewerBinarySetSkipInfo()` 508807ea322SDave May @*/ 5099371c9d4SSatish Balay PetscErrorCode PetscViewerBinaryGetSkipInfo(PetscViewer viewer, PetscBool *skip) { 510807ea322SDave May PetscFunctionBegin; 511cc843e7aSLisandro Dalcin PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 1); 512cc843e7aSLisandro Dalcin PetscValidBoolPointer(skip, 2); 513cac4c232SBarry Smith PetscUseMethod(viewer, "PetscViewerBinaryGetSkipInfo_C", (PetscViewer, PetscBool *), (viewer, skip)); 514807ea322SDave May PetscFunctionReturn(0); 515807ea322SDave May } 516807ea322SDave May 5179371c9d4SSatish Balay static PetscErrorCode PetscViewerBinaryGetSkipInfo_Binary(PetscViewer viewer, PetscBool *skip) { 518807ea322SDave May PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 519807ea322SDave May 520807ea322SDave May PetscFunctionBegin; 521cc843e7aSLisandro Dalcin *skip = vbinary->skipinfo; 522807ea322SDave May PetscFunctionReturn(0); 523807ea322SDave May } 524807ea322SDave May 5255c6c1daeSBarry Smith /*@ 5265c6c1daeSBarry Smith PetscViewerBinarySetSkipOptions - do not use the PETSc options database when loading objects 5275c6c1daeSBarry Smith 5285c6c1daeSBarry Smith Not Collective 5295c6c1daeSBarry Smith 5305c6c1daeSBarry Smith Input Parameters: 5315c6c1daeSBarry Smith + viewer - PetscViewer context, obtained from PetscViewerBinaryOpen() 53210699b91SBarry Smith - skip - PETSC_TRUE means do not use the options from the options database 5335c6c1daeSBarry Smith 5345c6c1daeSBarry Smith Options Database Key: 53510699b91SBarry Smith . -viewer_binary_skip_options - true means do not use the options from the options database 5365c6c1daeSBarry Smith 5375c6c1daeSBarry Smith Level: advanced 5385c6c1daeSBarry Smith 53995452b02SPatrick Sanan Notes: 54095452b02SPatrick Sanan This must be called after PetscViewerSetType() 5415c6c1daeSBarry Smith 542db781477SPatrick Sanan .seealso: `PetscViewerBinaryOpen()`, `PetscViewerBinaryGetDescriptor()`, `PetscViewerBinarySkipInfo()`, 543db781477SPatrick Sanan `PetscViewerBinaryGetSkipOptions()` 5445c6c1daeSBarry Smith @*/ 5459371c9d4SSatish Balay PetscErrorCode PetscViewerBinarySetSkipOptions(PetscViewer viewer, PetscBool skip) { 5465c6c1daeSBarry Smith PetscFunctionBegin; 547cc843e7aSLisandro Dalcin PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 1); 548cc843e7aSLisandro Dalcin PetscValidLogicalCollectiveBool(viewer, skip, 2); 549cac4c232SBarry Smith PetscTryMethod(viewer, "PetscViewerBinarySetSkipOptions_C", (PetscViewer, PetscBool), (viewer, skip)); 550807ea322SDave May PetscFunctionReturn(0); 551807ea322SDave May } 552807ea322SDave May 5539371c9d4SSatish Balay static PetscErrorCode PetscViewerBinarySetSkipOptions_Binary(PetscViewer viewer, PetscBool skip) { 554cc843e7aSLisandro Dalcin PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 555807ea322SDave May 556807ea322SDave May PetscFunctionBegin; 557cc843e7aSLisandro Dalcin vbinary->skipoptions = skip; 5585c6c1daeSBarry Smith PetscFunctionReturn(0); 5595c6c1daeSBarry Smith } 5605c6c1daeSBarry Smith 5615c6c1daeSBarry Smith /*@ 5625c6c1daeSBarry Smith PetscViewerBinaryGetSkipOptions - checks if viewer uses the PETSc options database when loading objects 5635c6c1daeSBarry Smith 5645c6c1daeSBarry Smith Not Collective 5655c6c1daeSBarry Smith 5665c6c1daeSBarry Smith Input Parameter: 5675c6c1daeSBarry Smith . viewer - PetscViewer context, obtained from PetscViewerBinaryOpen() 5685c6c1daeSBarry Smith 5695c6c1daeSBarry Smith Output Parameter: 5705c6c1daeSBarry Smith . skip - PETSC_TRUE means do not use 5715c6c1daeSBarry Smith 5725c6c1daeSBarry Smith Level: advanced 5735c6c1daeSBarry Smith 57495452b02SPatrick Sanan Notes: 57595452b02SPatrick Sanan This must be called after PetscViewerSetType() 5765c6c1daeSBarry Smith 577db781477SPatrick Sanan .seealso: `PetscViewerBinaryOpen()`, `PetscViewerBinaryGetDescriptor()`, `PetscViewerBinarySkipInfo()`, 578db781477SPatrick Sanan `PetscViewerBinarySetSkipOptions()` 5795c6c1daeSBarry Smith @*/ 5809371c9d4SSatish Balay PetscErrorCode PetscViewerBinaryGetSkipOptions(PetscViewer viewer, PetscBool *skip) { 5815c6c1daeSBarry Smith PetscFunctionBegin; 582cc843e7aSLisandro Dalcin PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 1); 583cc843e7aSLisandro Dalcin PetscValidBoolPointer(skip, 2); 584cac4c232SBarry Smith PetscUseMethod(viewer, "PetscViewerBinaryGetSkipOptions_C", (PetscViewer, PetscBool *), (viewer, skip)); 5855c6c1daeSBarry Smith PetscFunctionReturn(0); 5865c6c1daeSBarry Smith } 5875c6c1daeSBarry Smith 5889371c9d4SSatish Balay static PetscErrorCode PetscViewerBinaryGetSkipOptions_Binary(PetscViewer viewer, PetscBool *skip) { 589d21b9a37SPierre Jolivet PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 5905c6c1daeSBarry Smith 5915c6c1daeSBarry Smith PetscFunctionBegin; 592cc843e7aSLisandro Dalcin *skip = vbinary->skipoptions; 5935c6c1daeSBarry Smith PetscFunctionReturn(0); 5945c6c1daeSBarry Smith } 5955c6c1daeSBarry Smith 5965c6c1daeSBarry Smith /*@ 5975c6c1daeSBarry Smith PetscViewerBinarySetSkipHeader - do not write a header with size information on output, just raw data 5985c6c1daeSBarry Smith 5995c6c1daeSBarry Smith Not Collective 6005c6c1daeSBarry Smith 6015c6c1daeSBarry Smith Input Parameters: 6025c6c1daeSBarry Smith + viewer - PetscViewer context, obtained from PetscViewerBinaryOpen() 6035c6c1daeSBarry Smith - skip - PETSC_TRUE means do not write header 6045c6c1daeSBarry Smith 6055c6c1daeSBarry Smith Options Database Key: 60610699b91SBarry Smith . -viewer_binary_skip_header - PETSC_TRUE means do not write header 6075c6c1daeSBarry Smith 6085c6c1daeSBarry Smith Level: advanced 6095c6c1daeSBarry Smith 61095452b02SPatrick Sanan Notes: 61195452b02SPatrick Sanan This must be called after PetscViewerSetType() 6125c6c1daeSBarry Smith 61310699b91SBarry Smith Is ignored on anything but a binary viewer 6145c6c1daeSBarry Smith 615db781477SPatrick Sanan .seealso: `PetscViewerBinaryOpen()`, `PetscViewerBinaryGetDescriptor()`, `PetscViewerBinarySkipInfo()`, 616db781477SPatrick Sanan `PetscViewerBinaryGetSkipHeader()` 6175c6c1daeSBarry Smith @*/ 6189371c9d4SSatish Balay PetscErrorCode PetscViewerBinarySetSkipHeader(PetscViewer viewer, PetscBool skip) { 6195c6c1daeSBarry Smith PetscFunctionBegin; 620cc843e7aSLisandro Dalcin PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 1); 621cc843e7aSLisandro Dalcin PetscValidLogicalCollectiveBool(viewer, skip, 2); 622cac4c232SBarry Smith PetscTryMethod(viewer, "PetscViewerBinarySetSkipHeader_C", (PetscViewer, PetscBool), (viewer, skip)); 6235c6c1daeSBarry Smith PetscFunctionReturn(0); 6245c6c1daeSBarry Smith } 6255c6c1daeSBarry Smith 6269371c9d4SSatish Balay static PetscErrorCode PetscViewerBinarySetSkipHeader_Binary(PetscViewer viewer, PetscBool skip) { 6275c6c1daeSBarry Smith PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 6285c6c1daeSBarry Smith 6295c6c1daeSBarry Smith PetscFunctionBegin; 630cc843e7aSLisandro Dalcin vbinary->skipheader = skip; 6315c6c1daeSBarry Smith PetscFunctionReturn(0); 6325c6c1daeSBarry Smith } 6335c6c1daeSBarry Smith 6345c6c1daeSBarry Smith /*@ 6355c6c1daeSBarry Smith PetscViewerBinaryGetSkipHeader - checks whether to write a header with size information on output, or just raw data 6365c6c1daeSBarry Smith 6375c6c1daeSBarry Smith Not Collective 6385c6c1daeSBarry Smith 6395c6c1daeSBarry Smith Input Parameter: 6405c6c1daeSBarry Smith . viewer - PetscViewer context, obtained from PetscViewerBinaryOpen() 6415c6c1daeSBarry Smith 6425c6c1daeSBarry Smith Output Parameter: 6435c6c1daeSBarry Smith . skip - PETSC_TRUE means do not write header 6445c6c1daeSBarry Smith 6455c6c1daeSBarry Smith Level: advanced 6465c6c1daeSBarry Smith 64795452b02SPatrick Sanan Notes: 64895452b02SPatrick Sanan This must be called after PetscViewerSetType() 6495c6c1daeSBarry Smith 6505c6c1daeSBarry Smith Returns false for PETSCSOCKETVIEWER, you cannot skip the header for it. 6515c6c1daeSBarry Smith 652db781477SPatrick Sanan .seealso: `PetscViewerBinaryOpen()`, `PetscViewerBinaryGetDescriptor()`, `PetscViewerBinarySkipInfo()`, 653db781477SPatrick Sanan `PetscViewerBinarySetSkipHeader()` 6545c6c1daeSBarry Smith @*/ 6559371c9d4SSatish Balay PetscErrorCode PetscViewerBinaryGetSkipHeader(PetscViewer viewer, PetscBool *skip) { 6565c6c1daeSBarry Smith PetscFunctionBegin; 657cc843e7aSLisandro Dalcin PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 1); 658cc843e7aSLisandro Dalcin PetscValidBoolPointer(skip, 2); 659cac4c232SBarry Smith PetscUseMethod(viewer, "PetscViewerBinaryGetSkipHeader_C", (PetscViewer, PetscBool *), (viewer, skip)); 6605c6c1daeSBarry Smith PetscFunctionReturn(0); 6615c6c1daeSBarry Smith } 6625c6c1daeSBarry Smith 6639371c9d4SSatish Balay static PetscErrorCode PetscViewerBinaryGetSkipHeader_Binary(PetscViewer viewer, PetscBool *skip) { 664f3b211e4SSatish Balay PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 6655c6c1daeSBarry Smith 6665c6c1daeSBarry Smith PetscFunctionBegin; 667cc843e7aSLisandro Dalcin *skip = vbinary->skipheader; 6685c6c1daeSBarry Smith PetscFunctionReturn(0); 6695c6c1daeSBarry Smith } 6705c6c1daeSBarry Smith 6715c6c1daeSBarry Smith /*@C 6725c6c1daeSBarry Smith PetscViewerBinaryGetInfoPointer - Extracts the file pointer for the ASCII 6735c6c1daeSBarry Smith info file associated with a binary file. 6745c6c1daeSBarry Smith 6755c6c1daeSBarry Smith Not Collective 6765c6c1daeSBarry Smith 6775c6c1daeSBarry Smith Input Parameter: 6785c6c1daeSBarry Smith . viewer - PetscViewer context, obtained from PetscViewerBinaryOpen() 6795c6c1daeSBarry Smith 6805c6c1daeSBarry Smith Output Parameter: 6810298fd71SBarry Smith . file - file pointer Always returns NULL if not a binary viewer 6825c6c1daeSBarry Smith 6835c6c1daeSBarry Smith Level: advanced 6845c6c1daeSBarry Smith 6855c6c1daeSBarry Smith Notes: 6865c6c1daeSBarry Smith For writable binary PetscViewers, the descriptor will only be valid for the 6875c6c1daeSBarry Smith first processor in the communicator that shares the PetscViewer. 6885c6c1daeSBarry Smith 6895c6c1daeSBarry Smith Fortran Note: 6905c6c1daeSBarry Smith This routine is not supported in Fortran. 6915c6c1daeSBarry Smith 692c2e3fba1SPatrick Sanan .seealso: `PetscViewerBinaryOpen()`, `PetscViewerBinaryGetDescriptor()` 6935c6c1daeSBarry Smith @*/ 6949371c9d4SSatish Balay PetscErrorCode PetscViewerBinaryGetInfoPointer(PetscViewer viewer, FILE **file) { 6955c6c1daeSBarry Smith PetscFunctionBegin; 696cc843e7aSLisandro Dalcin PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 1); 697cc843e7aSLisandro Dalcin PetscValidPointer(file, 2); 6980298fd71SBarry Smith *file = NULL; 699cac4c232SBarry Smith PetscTryMethod(viewer, "PetscViewerBinaryGetInfoPointer_C", (PetscViewer, FILE **), (viewer, file)); 7005c6c1daeSBarry Smith PetscFunctionReturn(0); 7015c6c1daeSBarry Smith } 7025c6c1daeSBarry Smith 7039371c9d4SSatish Balay static PetscErrorCode PetscViewerBinaryGetInfoPointer_Binary(PetscViewer viewer, FILE **file) { 704cc843e7aSLisandro Dalcin PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 7055c6c1daeSBarry Smith 7065c6c1daeSBarry Smith PetscFunctionBegin; 7079566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 708cc843e7aSLisandro Dalcin *file = vbinary->fdes_info; 709cc843e7aSLisandro Dalcin if (viewer->format == PETSC_VIEWER_BINARY_MATLAB && !vbinary->matlabheaderwritten) { 7105c6c1daeSBarry Smith if (vbinary->fdes_info) { 711cc843e7aSLisandro Dalcin FILE *info = vbinary->fdes_info; 7129566063dSJacob Faibussowitsch PetscCall(PetscFPrintf(PETSC_COMM_SELF, info, "#--- begin code written by PetscViewerBinary for MATLAB format ---#\n")); 7139566063dSJacob Faibussowitsch PetscCall(PetscFPrintf(PETSC_COMM_SELF, info, "#$$ Set.filename = '%s';\n", vbinary->filename)); 7149566063dSJacob Faibussowitsch PetscCall(PetscFPrintf(PETSC_COMM_SELF, info, "#$$ fd = PetscOpenFile(Set.filename);\n")); 7159566063dSJacob Faibussowitsch PetscCall(PetscFPrintf(PETSC_COMM_SELF, info, "#--- end code written by PetscViewerBinary for MATLAB format ---#\n\n")); 716cc843e7aSLisandro Dalcin } 717cc843e7aSLisandro Dalcin vbinary->matlabheaderwritten = PETSC_TRUE; 7185c6c1daeSBarry Smith } 7195c6c1daeSBarry Smith PetscFunctionReturn(0); 7205c6c1daeSBarry Smith } 7215c6c1daeSBarry Smith 722e0385b85SDave May #if defined(PETSC_HAVE_MPIIO) 7239371c9d4SSatish Balay static PetscErrorCode PetscViewerFileClose_BinaryMPIIO(PetscViewer v) { 724e0385b85SDave May PetscViewer_Binary *vbinary = (PetscViewer_Binary *)v->data; 725e0385b85SDave May 726e0385b85SDave May PetscFunctionBegin; 727*48a46eb9SPierre Jolivet if (vbinary->mfdes != MPI_FILE_NULL) PetscCallMPI(MPI_File_close(&vbinary->mfdes)); 728*48a46eb9SPierre Jolivet if (vbinary->mfsub != MPI_FILE_NULL) PetscCallMPI(MPI_File_close(&vbinary->mfsub)); 729cc843e7aSLisandro Dalcin vbinary->moff = 0; 730e0385b85SDave May PetscFunctionReturn(0); 731e0385b85SDave May } 732e0385b85SDave May #endif 733e0385b85SDave May 7349371c9d4SSatish Balay static PetscErrorCode PetscViewerFileClose_BinarySTDIO(PetscViewer v) { 735cc843e7aSLisandro Dalcin PetscViewer_Binary *vbinary = (PetscViewer_Binary *)v->data; 736cc843e7aSLisandro Dalcin 737cc843e7aSLisandro Dalcin PetscFunctionBegin; 738cc843e7aSLisandro Dalcin if (vbinary->fdes != -1) { 7399566063dSJacob Faibussowitsch PetscCall(PetscBinaryClose(vbinary->fdes)); 740cc843e7aSLisandro Dalcin vbinary->fdes = -1; 741cc843e7aSLisandro Dalcin if (vbinary->storecompressed) { 742cc843e7aSLisandro Dalcin char cmd[8 + PETSC_MAX_PATH_LEN], out[64 + PETSC_MAX_PATH_LEN] = ""; 743cc843e7aSLisandro Dalcin const char *gzfilename = vbinary->ogzfilename ? vbinary->ogzfilename : vbinary->filename; 744cc843e7aSLisandro Dalcin /* compress the file */ 7459566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(cmd, "gzip -f ", sizeof(cmd))); 7469566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(cmd, gzfilename, sizeof(cmd))); 747cc843e7aSLisandro Dalcin #if defined(PETSC_HAVE_POPEN) 748cc843e7aSLisandro Dalcin { 749cc843e7aSLisandro Dalcin FILE *fp; 7509566063dSJacob Faibussowitsch PetscCall(PetscPOpen(PETSC_COMM_SELF, NULL, cmd, "r", &fp)); 751cc73adaaSBarry Smith PetscCheck(!fgets(out, (int)(sizeof(out) - 1), fp), PETSC_COMM_SELF, PETSC_ERR_LIB, "Error from command %s\n%s", cmd, out); 7529566063dSJacob Faibussowitsch PetscCall(PetscPClose(PETSC_COMM_SELF, fp)); 753cc843e7aSLisandro Dalcin } 754cc843e7aSLisandro Dalcin #endif 755cc843e7aSLisandro Dalcin } 756cc843e7aSLisandro Dalcin } 7579566063dSJacob Faibussowitsch PetscCall(PetscFree(vbinary->ogzfilename)); 758cc843e7aSLisandro Dalcin PetscFunctionReturn(0); 759cc843e7aSLisandro Dalcin } 760cc843e7aSLisandro Dalcin 7619371c9d4SSatish Balay static PetscErrorCode PetscViewerFileClose_BinaryInfo(PetscViewer v) { 762cc843e7aSLisandro Dalcin PetscViewer_Binary *vbinary = (PetscViewer_Binary *)v->data; 763cc843e7aSLisandro Dalcin 764cc843e7aSLisandro Dalcin PetscFunctionBegin; 765cc843e7aSLisandro Dalcin if (v->format == PETSC_VIEWER_BINARY_MATLAB && vbinary->matlabheaderwritten) { 766cc843e7aSLisandro Dalcin if (vbinary->fdes_info) { 767cc843e7aSLisandro Dalcin FILE *info = vbinary->fdes_info; 7689566063dSJacob Faibussowitsch PetscCall(PetscFPrintf(PETSC_COMM_SELF, info, "#--- begin code written by PetscViewerBinary for MATLAB format ---#\n")); 7699566063dSJacob Faibussowitsch PetscCall(PetscFPrintf(PETSC_COMM_SELF, info, "#$$ close(fd);\n")); 7709566063dSJacob Faibussowitsch PetscCall(PetscFPrintf(PETSC_COMM_SELF, info, "#--- end code written by PetscViewerBinary for MATLAB format ---#\n\n")); 771cc843e7aSLisandro Dalcin } 772cc843e7aSLisandro Dalcin } 773cc843e7aSLisandro Dalcin if (vbinary->fdes_info) { 774cc843e7aSLisandro Dalcin FILE *info = vbinary->fdes_info; 775cc843e7aSLisandro Dalcin vbinary->fdes_info = NULL; 776cc73adaaSBarry Smith PetscCheck(!fclose(info), PETSC_COMM_SELF, PETSC_ERR_SYS, "fclose() failed on file"); 777cc843e7aSLisandro Dalcin } 778cc843e7aSLisandro Dalcin PetscFunctionReturn(0); 779cc843e7aSLisandro Dalcin } 780cc843e7aSLisandro Dalcin 7819371c9d4SSatish Balay static PetscErrorCode PetscViewerFileClose_Binary(PetscViewer v) { 782cc843e7aSLisandro Dalcin PetscFunctionBegin; 783cc843e7aSLisandro Dalcin #if defined(PETSC_HAVE_MPIIO) 7849566063dSJacob Faibussowitsch PetscCall(PetscViewerFileClose_BinaryMPIIO(v)); 785cc843e7aSLisandro Dalcin #endif 7869566063dSJacob Faibussowitsch PetscCall(PetscViewerFileClose_BinarySTDIO(v)); 7879566063dSJacob Faibussowitsch PetscCall(PetscViewerFileClose_BinaryInfo(v)); 788cc843e7aSLisandro Dalcin PetscFunctionReturn(0); 789cc843e7aSLisandro Dalcin } 790cc843e7aSLisandro Dalcin 7919371c9d4SSatish Balay static PetscErrorCode PetscViewerDestroy_Binary(PetscViewer v) { 7925c6c1daeSBarry Smith PetscViewer_Binary *vbinary = (PetscViewer_Binary *)v->data; 7935c6c1daeSBarry Smith 7945c6c1daeSBarry Smith PetscFunctionBegin; 7959566063dSJacob Faibussowitsch PetscCall(PetscViewerFileClose_Binary(v)); 7969566063dSJacob Faibussowitsch PetscCall(PetscFree(vbinary->filename)); 7979566063dSJacob Faibussowitsch PetscCall(PetscFree(vbinary)); 7982e956fe4SStefano Zampini PetscCall(PetscViewerBinaryClearFunctionList(v)); 799e0385b85SDave May PetscFunctionReturn(0); 800e0385b85SDave May } 8015c6c1daeSBarry Smith 8025c6c1daeSBarry Smith /*@C 8035c6c1daeSBarry Smith PetscViewerBinaryOpen - Opens a file for binary input/output. 8045c6c1daeSBarry Smith 805d083f849SBarry Smith Collective 8065c6c1daeSBarry Smith 8075c6c1daeSBarry Smith Input Parameters: 8085c6c1daeSBarry Smith + comm - MPI communicator 8095c6c1daeSBarry Smith . name - name of file 810cc843e7aSLisandro Dalcin - mode - open mode of file 8115c6c1daeSBarry Smith $ FILE_MODE_WRITE - create new file for binary output 8125c6c1daeSBarry Smith $ FILE_MODE_READ - open existing file for binary input 8135c6c1daeSBarry Smith $ FILE_MODE_APPEND - open existing file for binary output 8145c6c1daeSBarry Smith 8155c6c1daeSBarry Smith Output Parameter: 816cc843e7aSLisandro Dalcin . viewer - PetscViewer for binary input/output to use with the specified file 8175c6c1daeSBarry Smith 8185c6c1daeSBarry Smith Options Database Keys: 81963c55180SPatrick Sanan + -viewer_binary_filename <name> - 82063c55180SPatrick Sanan . -viewer_binary_skip_info - 82163c55180SPatrick Sanan . -viewer_binary_skip_options - 82263c55180SPatrick Sanan . -viewer_binary_skip_header - 82363c55180SPatrick Sanan - -viewer_binary_mpiio - 8245c6c1daeSBarry Smith 8255c6c1daeSBarry Smith Level: beginner 8265c6c1daeSBarry Smith 8275c6c1daeSBarry Smith Note: 8285c6c1daeSBarry Smith This PetscViewer should be destroyed with PetscViewerDestroy(). 8295c6c1daeSBarry Smith 8305c6c1daeSBarry Smith For reading files, the filename may begin with ftp:// or http:// and/or 8315c6c1daeSBarry Smith end with .gz; in this case file is brought over and uncompressed. 8325c6c1daeSBarry Smith 8335c6c1daeSBarry Smith For creating files, if the file name ends with .gz it is automatically 8345c6c1daeSBarry Smith compressed when closed. 8355c6c1daeSBarry Smith 836db781477SPatrick Sanan .seealso: `PetscViewerASCIIOpen()`, `PetscViewerPushFormat()`, `PetscViewerDestroy()`, 837db781477SPatrick Sanan `VecView()`, `MatView()`, `VecLoad()`, `MatLoad()`, `PetscViewerBinaryGetDescriptor()`, 838db781477SPatrick Sanan `PetscViewerBinaryGetInfoPointer()`, `PetscFileMode`, `PetscViewer`, `PetscViewerBinaryRead()`, `PetscViewerBinarySetUseMPIIO()`, 839db781477SPatrick Sanan `PetscViewerBinaryGetUseMPIIO()`, `PetscViewerBinaryGetMPIIOOffset()` 8405c6c1daeSBarry Smith @*/ 8419371c9d4SSatish Balay PetscErrorCode PetscViewerBinaryOpen(MPI_Comm comm, const char name[], PetscFileMode mode, PetscViewer *viewer) { 8425c6c1daeSBarry Smith PetscFunctionBegin; 8439566063dSJacob Faibussowitsch PetscCall(PetscViewerCreate(comm, viewer)); 8449566063dSJacob Faibussowitsch PetscCall(PetscViewerSetType(*viewer, PETSCVIEWERBINARY)); 8459566063dSJacob Faibussowitsch PetscCall(PetscViewerFileSetMode(*viewer, mode)); 8469566063dSJacob Faibussowitsch PetscCall(PetscViewerFileSetName(*viewer, name)); 8479566063dSJacob Faibussowitsch PetscCall(PetscViewerSetFromOptions(*viewer)); 8485c6c1daeSBarry Smith PetscFunctionReturn(0); 8495c6c1daeSBarry Smith } 8505c6c1daeSBarry Smith 8515c6c1daeSBarry Smith #if defined(PETSC_HAVE_MPIIO) 8529371c9d4SSatish Balay static PetscErrorCode PetscViewerBinaryWriteReadMPIIO(PetscViewer viewer, void *data, PetscInt num, PetscInt *count, PetscDataType dtype, PetscBool write) { 85322a8f86cSLisandro Dalcin MPI_Comm comm = PetscObjectComm((PetscObject)viewer); 8545c6c1daeSBarry Smith PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 85522a8f86cSLisandro Dalcin MPI_File mfdes = vbinary->mfdes; 8565c6c1daeSBarry Smith MPI_Datatype mdtype; 85769e10bbaSLisandro Dalcin PetscMPIInt rank, cnt; 8585c6c1daeSBarry Smith MPI_Status status; 8595c6c1daeSBarry Smith MPI_Aint ul, dsize; 8605c6c1daeSBarry Smith 8615c6c1daeSBarry Smith PetscFunctionBegin; 8629566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 8639566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(num, &cnt)); 8649566063dSJacob Faibussowitsch PetscCall(PetscDataTypeToMPIDataType(dtype, &mdtype)); 8655c6c1daeSBarry Smith if (write) { 866*48a46eb9SPierre Jolivet if (rank == 0) PetscCall(MPIU_File_write_at(mfdes, vbinary->moff, data, cnt, mdtype, &status)); 8675c6c1daeSBarry Smith } else { 868dd400576SPatrick Sanan if (rank == 0) { 8699566063dSJacob Faibussowitsch PetscCall(MPIU_File_read_at(mfdes, vbinary->moff, data, cnt, mdtype, &status)); 8709566063dSJacob Faibussowitsch if (cnt > 0) PetscCallMPI(MPI_Get_count(&status, mdtype, &cnt)); 8715c6c1daeSBarry Smith } 8729566063dSJacob Faibussowitsch PetscCallMPI(MPI_Bcast(&cnt, 1, MPI_INT, 0, comm)); 8739566063dSJacob Faibussowitsch PetscCallMPI(MPI_Bcast(data, cnt, mdtype, 0, comm)); 87469e10bbaSLisandro Dalcin } 8759566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_get_extent(mdtype, &ul, &dsize)); 8765c6c1daeSBarry Smith vbinary->moff += dsize * cnt; 8779860990eSLisandro Dalcin if (count) *count = cnt; 8785c6c1daeSBarry Smith PetscFunctionReturn(0); 8795c6c1daeSBarry Smith } 8805c6c1daeSBarry Smith #endif 8815c6c1daeSBarry Smith 8825c6c1daeSBarry Smith /*@C 8835c6c1daeSBarry Smith PetscViewerBinaryRead - Reads from a binary file, all processors get the same result 8845c6c1daeSBarry Smith 885d083f849SBarry Smith Collective 8865c6c1daeSBarry Smith 8875c6c1daeSBarry Smith Input Parameters: 8885c6c1daeSBarry Smith + viewer - the binary viewer 889907376e6SBarry Smith . data - location of the data to be written 890060da220SMatthew G. Knepley . num - number of items of data to read 891907376e6SBarry Smith - dtype - type of data to read 8925c6c1daeSBarry Smith 893f8e4bde8SMatthew G. Knepley Output Parameters: 8945972f5f3SLisandro Dalcin . count - number of items of data actually read, or NULL. 895f8e4bde8SMatthew G. Knepley 8965c6c1daeSBarry Smith Level: beginner 8975c6c1daeSBarry Smith 898db781477SPatrick Sanan .seealso: `PetscViewerASCIIOpen()`, `PetscViewerPushFormat()`, `PetscViewerDestroy()`, 899db781477SPatrick Sanan `VecView()`, `MatView()`, `VecLoad()`, `MatLoad()`, `PetscViewerBinaryGetDescriptor()`, 900db781477SPatrick Sanan `PetscViewerBinaryGetInfoPointer()`, `PetscFileMode`, `PetscViewer`, `PetscViewerBinaryRead()` 9015c6c1daeSBarry Smith @*/ 9029371c9d4SSatish Balay PetscErrorCode PetscViewerBinaryRead(PetscViewer viewer, void *data, PetscInt num, PetscInt *count, PetscDataType dtype) { 90322a8f86cSLisandro Dalcin PetscViewer_Binary *vbinary; 9045c6c1daeSBarry Smith 90522a8f86cSLisandro Dalcin PetscFunctionBegin; 90622a8f86cSLisandro Dalcin PetscValidHeaderSpecificType(viewer, PETSC_VIEWER_CLASSID, 1, PETSCVIEWERBINARY); 90722a8f86cSLisandro Dalcin PetscValidLogicalCollectiveInt(viewer, num, 3); 9089566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 90922a8f86cSLisandro Dalcin vbinary = (PetscViewer_Binary *)viewer->data; 9105c6c1daeSBarry Smith #if defined(PETSC_HAVE_MPIIO) 911bc196f7cSDave May if (vbinary->usempiio) { 9129566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteReadMPIIO(viewer, data, num, count, dtype, PETSC_FALSE)); 9135c6c1daeSBarry Smith } else { 9145c6c1daeSBarry Smith #endif 9159566063dSJacob Faibussowitsch PetscCall(PetscBinarySynchronizedRead(PetscObjectComm((PetscObject)viewer), vbinary->fdes, data, num, count, dtype)); 9165c6c1daeSBarry Smith #if defined(PETSC_HAVE_MPIIO) 9175c6c1daeSBarry Smith } 9185c6c1daeSBarry Smith #endif 9195c6c1daeSBarry Smith PetscFunctionReturn(0); 9205c6c1daeSBarry Smith } 9215c6c1daeSBarry Smith 9225c6c1daeSBarry Smith /*@C 9235c6c1daeSBarry Smith PetscViewerBinaryWrite - writes to a binary file, only from the first process 9245c6c1daeSBarry Smith 925d083f849SBarry Smith Collective 9265c6c1daeSBarry Smith 9275c6c1daeSBarry Smith Input Parameters: 9285c6c1daeSBarry Smith + viewer - the binary viewer 9295c6c1daeSBarry Smith . data - location of data 9305824c9d0SPatrick Sanan . count - number of items of data to write 931f253e43cSLisandro Dalcin - dtype - type of data to write 9325c6c1daeSBarry Smith 9335c6c1daeSBarry Smith Level: beginner 9345c6c1daeSBarry Smith 935db781477SPatrick Sanan .seealso: `PetscViewerASCIIOpen()`, `PetscViewerPushFormat()`, `PetscViewerDestroy()`, 936db781477SPatrick Sanan `VecView()`, `MatView()`, `VecLoad()`, `MatLoad()`, `PetscViewerBinaryGetDescriptor()`, `PetscDataType` 937db781477SPatrick Sanan `PetscViewerBinaryGetInfoPointer()`, `PetscFileMode`, `PetscViewer`, `PetscViewerBinaryRead()` 9385c6c1daeSBarry Smith @*/ 9399371c9d4SSatish Balay PetscErrorCode PetscViewerBinaryWrite(PetscViewer viewer, const void *data, PetscInt count, PetscDataType dtype) { 94022a8f86cSLisandro Dalcin PetscViewer_Binary *vbinary; 9415c6c1daeSBarry Smith 9425c6c1daeSBarry Smith PetscFunctionBegin; 94322a8f86cSLisandro Dalcin PetscValidHeaderSpecificType(viewer, PETSC_VIEWER_CLASSID, 1, PETSCVIEWERBINARY); 94422a8f86cSLisandro Dalcin PetscValidLogicalCollectiveInt(viewer, count, 3); 9459566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 94622a8f86cSLisandro Dalcin vbinary = (PetscViewer_Binary *)viewer->data; 9475c6c1daeSBarry Smith #if defined(PETSC_HAVE_MPIIO) 948bc196f7cSDave May if (vbinary->usempiio) { 9499566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteReadMPIIO(viewer, (void *)data, count, NULL, dtype, PETSC_TRUE)); 9505c6c1daeSBarry Smith } else { 9515c6c1daeSBarry Smith #endif 9529566063dSJacob Faibussowitsch PetscCall(PetscBinarySynchronizedWrite(PetscObjectComm((PetscObject)viewer), vbinary->fdes, data, count, dtype)); 9535c6c1daeSBarry Smith #if defined(PETSC_HAVE_MPIIO) 9545c6c1daeSBarry Smith } 9555c6c1daeSBarry Smith #endif 9565c6c1daeSBarry Smith PetscFunctionReturn(0); 9575c6c1daeSBarry Smith } 9585c6c1daeSBarry Smith 9599371c9d4SSatish Balay static PetscErrorCode PetscViewerBinaryWriteReadAll(PetscViewer viewer, PetscBool write, void *data, PetscInt count, PetscInt start, PetscInt total, PetscDataType dtype) { 9605972f5f3SLisandro Dalcin MPI_Comm comm = PetscObjectComm((PetscObject)viewer); 9615972f5f3SLisandro Dalcin PetscMPIInt size, rank; 9625972f5f3SLisandro Dalcin MPI_Datatype mdtype; 963ec4bef21SJose E. Roman PETSC_UNUSED MPI_Aint lb; 964ec4bef21SJose E. Roman MPI_Aint dsize; 9655972f5f3SLisandro Dalcin PetscBool useMPIIO; 9665972f5f3SLisandro Dalcin 9675972f5f3SLisandro Dalcin PetscFunctionBegin; 9685972f5f3SLisandro Dalcin PetscValidHeaderSpecificType(viewer, PETSC_VIEWER_CLASSID, 1, PETSCVIEWERBINARY); 969064a246eSJacob Faibussowitsch PetscValidLogicalCollectiveBool(viewer, ((start >= 0) || (start == PETSC_DETERMINE)), 5); 970064a246eSJacob Faibussowitsch PetscValidLogicalCollectiveBool(viewer, ((total >= 0) || (total == PETSC_DETERMINE)), 6); 971064a246eSJacob Faibussowitsch PetscValidLogicalCollectiveInt(viewer, total, 6); 9729566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 9735972f5f3SLisandro Dalcin 9749566063dSJacob Faibussowitsch PetscCall(PetscDataTypeToMPIDataType(dtype, &mdtype)); 9759566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_get_extent(mdtype, &lb, &dsize)); 9769566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 9779566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 9785972f5f3SLisandro Dalcin 9799566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryGetUseMPIIO(viewer, &useMPIIO)); 9805972f5f3SLisandro Dalcin #if defined(PETSC_HAVE_MPIIO) 9815972f5f3SLisandro Dalcin if (useMPIIO) { 9825972f5f3SLisandro Dalcin MPI_File mfdes; 9835972f5f3SLisandro Dalcin MPI_Offset off; 9845972f5f3SLisandro Dalcin PetscMPIInt cnt; 9855972f5f3SLisandro Dalcin 9865972f5f3SLisandro Dalcin if (start == PETSC_DETERMINE) { 9879566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&count, &start, 1, MPIU_INT, MPI_SUM, comm)); 9885972f5f3SLisandro Dalcin start -= count; 9895972f5f3SLisandro Dalcin } 9905972f5f3SLisandro Dalcin if (total == PETSC_DETERMINE) { 9915972f5f3SLisandro Dalcin total = start + count; 9929566063dSJacob Faibussowitsch PetscCallMPI(MPI_Bcast(&total, 1, MPIU_INT, size - 1, comm)); 9935972f5f3SLisandro Dalcin } 9949566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(count, &cnt)); 9959566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryGetMPIIODescriptor(viewer, &mfdes)); 9969566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryGetMPIIOOffset(viewer, &off)); 9975972f5f3SLisandro Dalcin off += (MPI_Offset)(start * dsize); 9985972f5f3SLisandro Dalcin if (write) { 9999566063dSJacob Faibussowitsch PetscCall(MPIU_File_write_at_all(mfdes, off, data, cnt, mdtype, MPI_STATUS_IGNORE)); 10005972f5f3SLisandro Dalcin } else { 10019566063dSJacob Faibussowitsch PetscCall(MPIU_File_read_at_all(mfdes, off, data, cnt, mdtype, MPI_STATUS_IGNORE)); 10025972f5f3SLisandro Dalcin } 10035972f5f3SLisandro Dalcin off = (MPI_Offset)(total * dsize); 10049566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryAddMPIIOOffset(viewer, off)); 10055972f5f3SLisandro Dalcin PetscFunctionReturn(0); 10065972f5f3SLisandro Dalcin } 10075972f5f3SLisandro Dalcin #endif 10085972f5f3SLisandro Dalcin { 10095972f5f3SLisandro Dalcin int fdes; 10105972f5f3SLisandro Dalcin char *workbuf = NULL; 1011dd400576SPatrick Sanan PetscInt tcount = rank == 0 ? 0 : count, maxcount = 0, message_count, flowcontrolcount; 10125972f5f3SLisandro Dalcin PetscMPIInt tag, cnt, maxcnt, scnt = 0, rcnt = 0, j; 10135972f5f3SLisandro Dalcin MPI_Status status; 10145972f5f3SLisandro Dalcin 10159566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tag)); 10169566063dSJacob Faibussowitsch PetscCallMPI(MPI_Reduce(&tcount, &maxcount, 1, MPIU_INT, MPI_MAX, 0, comm)); 10179566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(maxcount, &maxcnt)); 10189566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(count, &cnt)); 10195972f5f3SLisandro Dalcin 10209566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryGetDescriptor(viewer, &fdes)); 10219566063dSJacob Faibussowitsch PetscCall(PetscViewerFlowControlStart(viewer, &message_count, &flowcontrolcount)); 1022dd400576SPatrick Sanan if (rank == 0) { 10239566063dSJacob Faibussowitsch PetscCall(PetscMalloc(maxcnt * dsize, &workbuf)); 10245972f5f3SLisandro Dalcin if (write) { 10259566063dSJacob Faibussowitsch PetscCall(PetscBinaryWrite(fdes, data, cnt, dtype)); 10265972f5f3SLisandro Dalcin } else { 10279566063dSJacob Faibussowitsch PetscCall(PetscBinaryRead(fdes, data, cnt, NULL, dtype)); 10285972f5f3SLisandro Dalcin } 10295972f5f3SLisandro Dalcin for (j = 1; j < size; j++) { 10309566063dSJacob Faibussowitsch PetscCall(PetscViewerFlowControlStepMain(viewer, j, &message_count, flowcontrolcount)); 10315972f5f3SLisandro Dalcin if (write) { 10329566063dSJacob Faibussowitsch PetscCallMPI(MPI_Recv(workbuf, maxcnt, mdtype, j, tag, comm, &status)); 10339566063dSJacob Faibussowitsch PetscCallMPI(MPI_Get_count(&status, mdtype, &rcnt)); 10349566063dSJacob Faibussowitsch PetscCall(PetscBinaryWrite(fdes, workbuf, rcnt, dtype)); 10355972f5f3SLisandro Dalcin } else { 10369566063dSJacob Faibussowitsch PetscCallMPI(MPI_Recv(&scnt, 1, MPI_INT, j, tag, comm, MPI_STATUS_IGNORE)); 10379566063dSJacob Faibussowitsch PetscCall(PetscBinaryRead(fdes, workbuf, scnt, NULL, dtype)); 10389566063dSJacob Faibussowitsch PetscCallMPI(MPI_Send(workbuf, scnt, mdtype, j, tag, comm)); 10395972f5f3SLisandro Dalcin } 10405972f5f3SLisandro Dalcin } 10419566063dSJacob Faibussowitsch PetscCall(PetscFree(workbuf)); 10429566063dSJacob Faibussowitsch PetscCall(PetscViewerFlowControlEndMain(viewer, &message_count)); 10435972f5f3SLisandro Dalcin } else { 10449566063dSJacob Faibussowitsch PetscCall(PetscViewerFlowControlStepWorker(viewer, rank, &message_count)); 10455972f5f3SLisandro Dalcin if (write) { 10469566063dSJacob Faibussowitsch PetscCallMPI(MPI_Send(data, cnt, mdtype, 0, tag, comm)); 10475972f5f3SLisandro Dalcin } else { 10489566063dSJacob Faibussowitsch PetscCallMPI(MPI_Send(&cnt, 1, MPI_INT, 0, tag, comm)); 10499566063dSJacob Faibussowitsch PetscCallMPI(MPI_Recv(data, cnt, mdtype, 0, tag, comm, MPI_STATUS_IGNORE)); 10505972f5f3SLisandro Dalcin } 10519566063dSJacob Faibussowitsch PetscCall(PetscViewerFlowControlEndWorker(viewer, &message_count)); 10525972f5f3SLisandro Dalcin } 10535972f5f3SLisandro Dalcin } 10545972f5f3SLisandro Dalcin PetscFunctionReturn(0); 10555972f5f3SLisandro Dalcin } 10565972f5f3SLisandro Dalcin 10575972f5f3SLisandro Dalcin /*@C 10585972f5f3SLisandro Dalcin PetscViewerBinaryReadAll - reads from a binary file from all processes 10595972f5f3SLisandro Dalcin 10605972f5f3SLisandro Dalcin Collective 10615972f5f3SLisandro Dalcin 10625972f5f3SLisandro Dalcin Input Parameters: 10635972f5f3SLisandro Dalcin + viewer - the binary viewer 10645972f5f3SLisandro Dalcin . data - location of data 10655972f5f3SLisandro Dalcin . count - local number of items of data to read 10665972f5f3SLisandro Dalcin . start - local start, can be PETSC_DETERMINE 10675972f5f3SLisandro Dalcin . total - global number of items of data to read, can be PETSC_DETERMINE 10685972f5f3SLisandro Dalcin - dtype - type of data to read 10695972f5f3SLisandro Dalcin 10705972f5f3SLisandro Dalcin Level: advanced 10715972f5f3SLisandro Dalcin 1072db781477SPatrick Sanan .seealso: `PetscViewerBinaryOpen()`, `PetscViewerBinarySetUseMPIIO()`, `PetscViewerBinaryRead()`, `PetscViewerBinaryWriteAll()` 10735972f5f3SLisandro Dalcin @*/ 10749371c9d4SSatish Balay PetscErrorCode PetscViewerBinaryReadAll(PetscViewer viewer, void *data, PetscInt count, PetscInt start, PetscInt total, PetscDataType dtype) { 10755972f5f3SLisandro Dalcin PetscFunctionBegin; 10769566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteReadAll(viewer, PETSC_FALSE, data, count, start, total, dtype)); 10775972f5f3SLisandro Dalcin PetscFunctionReturn(0); 10785972f5f3SLisandro Dalcin } 10795972f5f3SLisandro Dalcin 10805972f5f3SLisandro Dalcin /*@C 10815972f5f3SLisandro Dalcin PetscViewerBinaryWriteAll - writes to a binary file from all processes 10825972f5f3SLisandro Dalcin 10835972f5f3SLisandro Dalcin Collective 10845972f5f3SLisandro Dalcin 10855972f5f3SLisandro Dalcin Input Parameters: 10865972f5f3SLisandro Dalcin + viewer - the binary viewer 10875972f5f3SLisandro Dalcin . data - location of data 10885972f5f3SLisandro Dalcin . count - local number of items of data to write 10895972f5f3SLisandro Dalcin . start - local start, can be PETSC_DETERMINE 10905972f5f3SLisandro Dalcin . total - global number of items of data to write, can be PETSC_DETERMINE 10915972f5f3SLisandro Dalcin - dtype - type of data to write 10925972f5f3SLisandro Dalcin 10935972f5f3SLisandro Dalcin Level: advanced 10945972f5f3SLisandro Dalcin 1095db781477SPatrick Sanan .seealso: `PetscViewerBinaryOpen()`, `PetscViewerBinarySetUseMPIIO()`, `PetscViewerBinaryWriteAll()`, `PetscViewerBinaryReadAll()` 10965972f5f3SLisandro Dalcin @*/ 10979371c9d4SSatish Balay PetscErrorCode PetscViewerBinaryWriteAll(PetscViewer viewer, const void *data, PetscInt count, PetscInt start, PetscInt total, PetscDataType dtype) { 10985972f5f3SLisandro Dalcin PetscFunctionBegin; 10999566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteReadAll(viewer, PETSC_TRUE, (void *)data, count, start, total, dtype)); 11005972f5f3SLisandro Dalcin PetscFunctionReturn(0); 11015972f5f3SLisandro Dalcin } 11025972f5f3SLisandro Dalcin 11035c6c1daeSBarry Smith /*@C 11045c6c1daeSBarry Smith PetscViewerBinaryWriteStringArray - writes to a binary file, only from the first process an array of strings 11055c6c1daeSBarry Smith 1106d083f849SBarry Smith Collective 11075c6c1daeSBarry Smith 11085c6c1daeSBarry Smith Input Parameters: 11095c6c1daeSBarry Smith + viewer - the binary viewer 11105c6c1daeSBarry Smith - data - location of the array of strings 11115c6c1daeSBarry Smith 11125c6c1daeSBarry Smith Level: intermediate 11135c6c1daeSBarry Smith 111495452b02SPatrick Sanan Notes: 111595452b02SPatrick Sanan array of strings is null terminated 11165c6c1daeSBarry Smith 1117db781477SPatrick Sanan .seealso: `PetscViewerASCIIOpen()`, `PetscViewerPushFormat()`, `PetscViewerDestroy()`, 1118db781477SPatrick Sanan `VecView()`, `MatView()`, `VecLoad()`, `MatLoad()`, `PetscViewerBinaryGetDescriptor()`, 1119db781477SPatrick Sanan `PetscViewerBinaryGetInfoPointer()`, `PetscFileMode`, `PetscViewer`, `PetscViewerBinaryRead()` 11205c6c1daeSBarry Smith @*/ 11219371c9d4SSatish Balay PetscErrorCode PetscViewerBinaryWriteStringArray(PetscViewer viewer, const char *const *data) { 11225c6c1daeSBarry Smith PetscInt i, n = 0, *sizes; 1123cc843e7aSLisandro Dalcin size_t len; 11245c6c1daeSBarry Smith 112522a8f86cSLisandro Dalcin PetscFunctionBegin; 11269566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 11275c6c1daeSBarry Smith /* count number of strings */ 11289371c9d4SSatish Balay while (data[n++]) 11299371c9d4SSatish Balay ; 11305c6c1daeSBarry Smith n--; 11319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n + 1, &sizes)); 11325c6c1daeSBarry Smith sizes[0] = n; 11335c6c1daeSBarry Smith for (i = 0; i < n; i++) { 11349566063dSJacob Faibussowitsch PetscCall(PetscStrlen(data[i], &len)); 1135cc843e7aSLisandro Dalcin sizes[i + 1] = (PetscInt)len + 1; /* size includes space for the null terminator */ 11365c6c1daeSBarry Smith } 11379566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, sizes, n + 1, PETSC_INT)); 1138*48a46eb9SPierre Jolivet for (i = 0; i < n; i++) PetscCall(PetscViewerBinaryWrite(viewer, (void *)data[i], sizes[i + 1], PETSC_CHAR)); 11399566063dSJacob Faibussowitsch PetscCall(PetscFree(sizes)); 11405c6c1daeSBarry Smith PetscFunctionReturn(0); 11415c6c1daeSBarry Smith } 11425c6c1daeSBarry Smith 11435c6c1daeSBarry Smith /*@C 11445c6c1daeSBarry Smith PetscViewerBinaryReadStringArray - reads a binary file an array of strings 11455c6c1daeSBarry Smith 1146d083f849SBarry Smith Collective 11475c6c1daeSBarry Smith 11485c6c1daeSBarry Smith Input Parameter: 11495c6c1daeSBarry Smith . viewer - the binary viewer 11505c6c1daeSBarry Smith 11515c6c1daeSBarry Smith Output Parameter: 11525c6c1daeSBarry Smith . data - location of the array of strings 11535c6c1daeSBarry Smith 11545c6c1daeSBarry Smith Level: intermediate 11555c6c1daeSBarry Smith 115695452b02SPatrick Sanan Notes: 115795452b02SPatrick Sanan array of strings is null terminated 11585c6c1daeSBarry Smith 1159db781477SPatrick Sanan .seealso: `PetscViewerASCIIOpen()`, `PetscViewerPushFormat()`, `PetscViewerDestroy()`, 1160db781477SPatrick Sanan `VecView()`, `MatView()`, `VecLoad()`, `MatLoad()`, `PetscViewerBinaryGetDescriptor()`, 1161db781477SPatrick Sanan `PetscViewerBinaryGetInfoPointer()`, `PetscFileMode`, `PetscViewer`, `PetscViewerBinaryRead()` 11625c6c1daeSBarry Smith @*/ 11639371c9d4SSatish Balay PetscErrorCode PetscViewerBinaryReadStringArray(PetscViewer viewer, char ***data) { 1164060da220SMatthew G. Knepley PetscInt i, n, *sizes, N = 0; 11655c6c1daeSBarry Smith 116622a8f86cSLisandro Dalcin PetscFunctionBegin; 11679566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 11685c6c1daeSBarry Smith /* count number of strings */ 11699566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, &n, 1, NULL, PETSC_INT)); 11709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &sizes)); 11719566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, sizes, n, NULL, PETSC_INT)); 1172a297a907SKarl Rupp for (i = 0; i < n; i++) N += sizes[i]; 11739566063dSJacob Faibussowitsch PetscCall(PetscMalloc((n + 1) * sizeof(char *) + N * sizeof(char), data)); 11745c6c1daeSBarry Smith (*data)[0] = (char *)((*data) + n + 1); 1175a297a907SKarl Rupp for (i = 1; i < n; i++) (*data)[i] = (*data)[i - 1] + sizes[i - 1]; 11769566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, (*data)[0], N, NULL, PETSC_CHAR)); 117702c9f0b5SLisandro Dalcin (*data)[n] = NULL; 11789566063dSJacob Faibussowitsch PetscCall(PetscFree(sizes)); 11795c6c1daeSBarry Smith PetscFunctionReturn(0); 11805c6c1daeSBarry Smith } 11815c6c1daeSBarry Smith 1182cc843e7aSLisandro Dalcin /*@C 1183cc843e7aSLisandro Dalcin PetscViewerFileSetMode - Sets the open mode of file 1184cc843e7aSLisandro Dalcin 1185cc843e7aSLisandro Dalcin Logically Collective on PetscViewer 1186cc843e7aSLisandro Dalcin 1187cc843e7aSLisandro Dalcin Input Parameters: 1188cc843e7aSLisandro Dalcin + viewer - the PetscViewer; must be a a PETSCVIEWERBINARY, PETSCVIEWERMATLAB, PETSCVIEWERHDF5, or PETSCVIEWERASCII PetscViewer 1189cc843e7aSLisandro Dalcin - mode - open mode of file 1190cc843e7aSLisandro Dalcin $ FILE_MODE_WRITE - create new file for output 1191cc843e7aSLisandro Dalcin $ FILE_MODE_READ - open existing file for input 1192cc843e7aSLisandro Dalcin $ FILE_MODE_APPEND - open existing file for output 1193cc843e7aSLisandro Dalcin 1194cc843e7aSLisandro Dalcin Level: advanced 1195cc843e7aSLisandro Dalcin 1196db781477SPatrick Sanan .seealso: `PetscViewerFileSetMode()`, `PetscViewerCreate()`, `PetscViewerSetType()`, `PetscViewerBinaryOpen()` 1197cc843e7aSLisandro Dalcin 1198cc843e7aSLisandro Dalcin @*/ 11999371c9d4SSatish Balay PetscErrorCode PetscViewerFileSetMode(PetscViewer viewer, PetscFileMode mode) { 1200cc843e7aSLisandro Dalcin PetscFunctionBegin; 1201cc843e7aSLisandro Dalcin PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 1); 1202cc843e7aSLisandro Dalcin PetscValidLogicalCollectiveEnum(viewer, mode, 2); 120308401ef6SPierre Jolivet PetscCheck(mode != FILE_MODE_UNDEFINED, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Cannot set FILE_MODE_UNDEFINED"); 1204f7d195e4SLawrence Mitchell PetscCheck(mode >= FILE_MODE_UNDEFINED && mode <= FILE_MODE_APPEND_UPDATE, PetscObjectComm((PetscObject)viewer), PETSC_ERR_ARG_OUTOFRANGE, "Invalid file mode %d", (int)mode); 1205cac4c232SBarry Smith PetscTryMethod(viewer, "PetscViewerFileSetMode_C", (PetscViewer, PetscFileMode), (viewer, mode)); 1206cc843e7aSLisandro Dalcin PetscFunctionReturn(0); 1207cc843e7aSLisandro Dalcin } 1208cc843e7aSLisandro Dalcin 12099371c9d4SSatish Balay static PetscErrorCode PetscViewerFileSetMode_Binary(PetscViewer viewer, PetscFileMode mode) { 1210cc843e7aSLisandro Dalcin PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 1211cc843e7aSLisandro Dalcin 1212cc843e7aSLisandro Dalcin PetscFunctionBegin; 1213cc73adaaSBarry Smith PetscCheck(!viewer->setupcalled || vbinary->filemode == mode, PetscObjectComm((PetscObject)viewer), PETSC_ERR_ORDER, "Cannot change mode to %s after setup", PetscFileModes[mode]); 1214cc843e7aSLisandro Dalcin vbinary->filemode = mode; 1215cc843e7aSLisandro Dalcin PetscFunctionReturn(0); 1216cc843e7aSLisandro Dalcin } 1217cc843e7aSLisandro Dalcin 1218cc843e7aSLisandro Dalcin /*@C 1219cc843e7aSLisandro Dalcin PetscViewerFileGetMode - Gets the open mode of file 1220cc843e7aSLisandro Dalcin 1221cc843e7aSLisandro Dalcin Not Collective 1222cc843e7aSLisandro Dalcin 1223cc843e7aSLisandro Dalcin Input Parameter: 1224cc843e7aSLisandro Dalcin . viewer - the PetscViewer; must be a PETSCVIEWERBINARY, PETSCVIEWERMATLAB, PETSCVIEWERHDF5, or PETSCVIEWERASCII PetscViewer 1225cc843e7aSLisandro Dalcin 1226cc843e7aSLisandro Dalcin Output Parameter: 1227cc843e7aSLisandro Dalcin . mode - open mode of file 1228cc843e7aSLisandro Dalcin $ FILE_MODE_WRITE - create new file for binary output 1229cc843e7aSLisandro Dalcin $ FILE_MODE_READ - open existing file for binary input 1230cc843e7aSLisandro Dalcin $ FILE_MODE_APPEND - open existing file for binary output 1231cc843e7aSLisandro Dalcin 1232cc843e7aSLisandro Dalcin Level: advanced 1233cc843e7aSLisandro Dalcin 1234db781477SPatrick Sanan .seealso: `PetscViewerFileSetMode()`, `PetscViewerCreate()`, `PetscViewerSetType()`, `PetscViewerBinaryOpen()` 1235cc843e7aSLisandro Dalcin 1236cc843e7aSLisandro Dalcin @*/ 12379371c9d4SSatish Balay PetscErrorCode PetscViewerFileGetMode(PetscViewer viewer, PetscFileMode *mode) { 1238cc843e7aSLisandro Dalcin PetscFunctionBegin; 1239cc843e7aSLisandro Dalcin PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 1); 1240cc843e7aSLisandro Dalcin PetscValidPointer(mode, 2); 1241cac4c232SBarry Smith PetscUseMethod(viewer, "PetscViewerFileGetMode_C", (PetscViewer, PetscFileMode *), (viewer, mode)); 1242cc843e7aSLisandro Dalcin PetscFunctionReturn(0); 1243cc843e7aSLisandro Dalcin } 1244cc843e7aSLisandro Dalcin 12459371c9d4SSatish Balay static PetscErrorCode PetscViewerFileGetMode_Binary(PetscViewer viewer, PetscFileMode *mode) { 1246cc843e7aSLisandro Dalcin PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 1247cc843e7aSLisandro Dalcin 1248cc843e7aSLisandro Dalcin PetscFunctionBegin; 1249cc843e7aSLisandro Dalcin *mode = vbinary->filemode; 1250cc843e7aSLisandro Dalcin PetscFunctionReturn(0); 1251cc843e7aSLisandro Dalcin } 1252cc843e7aSLisandro Dalcin 12539371c9d4SSatish Balay static PetscErrorCode PetscViewerFileSetName_Binary(PetscViewer viewer, const char name[]) { 1254cc843e7aSLisandro Dalcin PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 1255cc843e7aSLisandro Dalcin 1256cc843e7aSLisandro Dalcin PetscFunctionBegin; 1257cc843e7aSLisandro Dalcin if (viewer->setupcalled && vbinary->filename) { 1258cc843e7aSLisandro Dalcin /* gzip can be run after the file with the previous filename has been closed */ 12599566063dSJacob Faibussowitsch PetscCall(PetscFree(vbinary->ogzfilename)); 12609566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(vbinary->filename, &vbinary->ogzfilename)); 1261cc843e7aSLisandro Dalcin } 12629566063dSJacob Faibussowitsch PetscCall(PetscFree(vbinary->filename)); 12639566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(name, &vbinary->filename)); 1264cc843e7aSLisandro Dalcin viewer->setupcalled = PETSC_FALSE; 1265cc843e7aSLisandro Dalcin PetscFunctionReturn(0); 1266cc843e7aSLisandro Dalcin } 1267cc843e7aSLisandro Dalcin 12689371c9d4SSatish Balay static PetscErrorCode PetscViewerFileGetName_Binary(PetscViewer viewer, const char **name) { 12695c6c1daeSBarry Smith PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 12705c6c1daeSBarry Smith 12715c6c1daeSBarry Smith PetscFunctionBegin; 12725c6c1daeSBarry Smith *name = vbinary->filename; 12735c6c1daeSBarry Smith PetscFunctionReturn(0); 12745c6c1daeSBarry Smith } 12755c6c1daeSBarry Smith 12765c6c1daeSBarry Smith #if defined(PETSC_HAVE_MPIIO) 12779371c9d4SSatish Balay static PetscErrorCode PetscViewerFileSetUp_BinaryMPIIO(PetscViewer viewer) { 12785c6c1daeSBarry Smith PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 1279e8a65b7dSLisandro Dalcin int amode; 12805c6c1daeSBarry Smith 12815c6c1daeSBarry Smith PetscFunctionBegin; 1282a297a907SKarl Rupp vbinary->storecompressed = PETSC_FALSE; 12835c6c1daeSBarry Smith 1284cc843e7aSLisandro Dalcin vbinary->moff = 0; 1285cc843e7aSLisandro Dalcin switch (vbinary->filemode) { 1286e8a65b7dSLisandro Dalcin case FILE_MODE_READ: amode = MPI_MODE_RDONLY; break; 1287e8a65b7dSLisandro Dalcin case FILE_MODE_WRITE: amode = MPI_MODE_WRONLY | MPI_MODE_CREATE; break; 128822a8f86cSLisandro Dalcin case FILE_MODE_APPEND: amode = MPI_MODE_WRONLY | MPI_MODE_CREATE | MPI_MODE_APPEND; break; 12897e4fd573SVaclav Hapla case FILE_MODE_UNDEFINED: SETERRQ(PetscObjectComm((PetscObject)viewer), PETSC_ERR_ORDER, "Must call PetscViewerFileSetMode() before PetscViewerSetUp()"); 129098921bdaSJacob Faibussowitsch default: SETERRQ(PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Unsupported file mode %s", PetscFileModes[vbinary->filemode]); 12915c6c1daeSBarry Smith } 12929566063dSJacob Faibussowitsch PetscCallMPI(MPI_File_open(PetscObjectComm((PetscObject)viewer), vbinary->filename, amode, MPI_INFO_NULL, &vbinary->mfdes)); 129322a8f86cSLisandro Dalcin /* 129422a8f86cSLisandro Dalcin The MPI standard does not have MPI_MODE_TRUNCATE. We emulate this behavior by setting the file size to zero. 129522a8f86cSLisandro Dalcin */ 12969566063dSJacob Faibussowitsch if (vbinary->filemode == FILE_MODE_WRITE) PetscCallMPI(MPI_File_set_size(vbinary->mfdes, 0)); 129722a8f86cSLisandro Dalcin /* 129822a8f86cSLisandro Dalcin Initially, all processes view the file as a linear byte stream. Therefore, for files opened with MPI_MODE_APPEND, 129922a8f86cSLisandro Dalcin MPI_File_get_position[_shared](fh, &offset) returns the absolute byte position at the end of file. 130022a8f86cSLisandro Dalcin Otherwise, we would need to call MPI_File_get_byte_offset(fh, offset, &byte_offset) to convert 130122a8f86cSLisandro Dalcin the offset in etype units to an absolute byte position. 130222a8f86cSLisandro Dalcin */ 13039566063dSJacob Faibussowitsch if (vbinary->filemode == FILE_MODE_APPEND) PetscCallMPI(MPI_File_get_position(vbinary->mfdes, &vbinary->moff)); 1304cc843e7aSLisandro Dalcin PetscFunctionReturn(0); 1305cc843e7aSLisandro Dalcin } 1306cc843e7aSLisandro Dalcin #endif 13075c6c1daeSBarry Smith 13089371c9d4SSatish Balay static PetscErrorCode PetscViewerFileSetUp_BinarySTDIO(PetscViewer viewer) { 1309cc843e7aSLisandro Dalcin PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 1310cc843e7aSLisandro Dalcin const char *fname; 1311cc843e7aSLisandro Dalcin char bname[PETSC_MAX_PATH_LEN], *gz; 1312cc843e7aSLisandro Dalcin PetscBool found; 1313cc843e7aSLisandro Dalcin PetscMPIInt rank; 13145c6c1daeSBarry Smith 1315cc843e7aSLisandro Dalcin PetscFunctionBegin; 13169566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)viewer), &rank)); 13175c6c1daeSBarry Smith 1318cc843e7aSLisandro Dalcin /* if file name ends in .gz strip that off and note user wants file compressed */ 1319cc843e7aSLisandro Dalcin vbinary->storecompressed = PETSC_FALSE; 1320cc843e7aSLisandro Dalcin if (vbinary->filemode == FILE_MODE_WRITE) { 13219566063dSJacob Faibussowitsch PetscCall(PetscStrstr(vbinary->filename, ".gz", &gz)); 13229371c9d4SSatish Balay if (gz && gz[3] == 0) { 13239371c9d4SSatish Balay *gz = 0; 13249371c9d4SSatish Balay vbinary->storecompressed = PETSC_TRUE; 13259371c9d4SSatish Balay } 1326cc843e7aSLisandro Dalcin } 1327cc843e7aSLisandro Dalcin #if !defined(PETSC_HAVE_POPEN) 132828b400f6SJacob Faibussowitsch PetscCheck(!vbinary->storecompressed, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP_SYS, "Cannot run gzip on this machine"); 1329cc843e7aSLisandro Dalcin #endif 1330cc843e7aSLisandro Dalcin 1331cc843e7aSLisandro Dalcin fname = vbinary->filename; 1332cc843e7aSLisandro Dalcin if (vbinary->filemode == FILE_MODE_READ) { /* possibly get the file from remote site or compressed file */ 13339566063dSJacob Faibussowitsch PetscCall(PetscFileRetrieve(PetscObjectComm((PetscObject)viewer), fname, bname, PETSC_MAX_PATH_LEN, &found)); 133428b400f6SJacob Faibussowitsch PetscCheck(found, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_OPEN, "Cannot locate file: %s", fname); 1335cc843e7aSLisandro Dalcin fname = bname; 13365c6c1daeSBarry Smith } 13375c6c1daeSBarry Smith 1338cc843e7aSLisandro Dalcin vbinary->fdes = -1; 1339dd400576SPatrick Sanan if (rank == 0) { /* only first processor opens file*/ 1340cc843e7aSLisandro Dalcin PetscFileMode mode = vbinary->filemode; 1341cc843e7aSLisandro Dalcin if (mode == FILE_MODE_APPEND) { 1342cc843e7aSLisandro Dalcin /* check if asked to append to a non-existing file */ 13439566063dSJacob Faibussowitsch PetscCall(PetscTestFile(fname, '\0', &found)); 1344cc843e7aSLisandro Dalcin if (!found) mode = FILE_MODE_WRITE; 1345cc843e7aSLisandro Dalcin } 13469566063dSJacob Faibussowitsch PetscCall(PetscBinaryOpen(fname, mode, &vbinary->fdes)); 1347cc843e7aSLisandro Dalcin } 1348cc843e7aSLisandro Dalcin PetscFunctionReturn(0); 1349cc843e7aSLisandro Dalcin } 1350cc843e7aSLisandro Dalcin 13519371c9d4SSatish Balay static PetscErrorCode PetscViewerFileSetUp_BinaryInfo(PetscViewer viewer) { 1352cc843e7aSLisandro Dalcin PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 1353cc843e7aSLisandro Dalcin PetscMPIInt rank; 1354cc843e7aSLisandro Dalcin PetscBool found; 1355cc843e7aSLisandro Dalcin 1356cc843e7aSLisandro Dalcin PetscFunctionBegin; 1357cc843e7aSLisandro Dalcin vbinary->fdes_info = NULL; 13589566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)viewer), &rank)); 1359dd400576SPatrick Sanan if (!vbinary->skipinfo && (vbinary->filemode == FILE_MODE_READ || rank == 0)) { 1360cc843e7aSLisandro Dalcin char infoname[PETSC_MAX_PATH_LEN], iname[PETSC_MAX_PATH_LEN], *gz; 1361cc843e7aSLisandro Dalcin 13629566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(infoname, vbinary->filename, sizeof(infoname))); 1363cc843e7aSLisandro Dalcin /* remove .gz if it ends file name */ 13649566063dSJacob Faibussowitsch PetscCall(PetscStrstr(infoname, ".gz", &gz)); 1365cc843e7aSLisandro Dalcin if (gz && gz[3] == 0) *gz = 0; 1366cc843e7aSLisandro Dalcin 13679566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(infoname, ".info", sizeof(infoname))); 1368cc843e7aSLisandro Dalcin if (vbinary->filemode == FILE_MODE_READ) { 13699566063dSJacob Faibussowitsch PetscCall(PetscFixFilename(infoname, iname)); 13709566063dSJacob Faibussowitsch PetscCall(PetscFileRetrieve(PetscObjectComm((PetscObject)viewer), iname, infoname, PETSC_MAX_PATH_LEN, &found)); 13719566063dSJacob Faibussowitsch if (found) PetscCall(PetscOptionsInsertFile(PetscObjectComm((PetscObject)viewer), ((PetscObject)viewer)->options, infoname, PETSC_FALSE)); 1372dd400576SPatrick Sanan } else if (rank == 0) { /* write or append */ 1373cc843e7aSLisandro Dalcin const char *omode = (vbinary->filemode == FILE_MODE_APPEND) ? "a" : "w"; 1374cc843e7aSLisandro Dalcin vbinary->fdes_info = fopen(infoname, omode); 137528b400f6SJacob Faibussowitsch PetscCheck(vbinary->fdes_info, PETSC_COMM_SELF, PETSC_ERR_FILE_OPEN, "Cannot open .info file %s for writing", infoname); 13765c6c1daeSBarry Smith } 13775c6c1daeSBarry Smith } 13785c6c1daeSBarry Smith PetscFunctionReturn(0); 13795c6c1daeSBarry Smith } 13805c6c1daeSBarry Smith 13819371c9d4SSatish Balay static PetscErrorCode PetscViewerSetUp_Binary(PetscViewer viewer) { 13825c6c1daeSBarry Smith PetscViewer_Binary *vbinary = (PetscViewer_Binary *)viewer->data; 1383cc843e7aSLisandro Dalcin PetscBool usempiio; 1384cc843e7aSLisandro Dalcin 13855c6c1daeSBarry Smith PetscFunctionBegin; 13869566063dSJacob Faibussowitsch if (!vbinary->setfromoptionscalled) PetscCall(PetscViewerSetFromOptions(viewer)); 138728b400f6SJacob Faibussowitsch PetscCheck(vbinary->filename, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call PetscViewerFileSetName()"); 138808401ef6SPierre Jolivet PetscCheck(vbinary->filemode != (PetscFileMode)-1, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Must call PetscViewerFileSetMode()"); 13899566063dSJacob Faibussowitsch PetscCall(PetscViewerFileClose_Binary(viewer)); 1390cc843e7aSLisandro Dalcin 13919566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryGetUseMPIIO(viewer, &usempiio)); 1392cc843e7aSLisandro Dalcin if (usempiio) { 1393cc843e7aSLisandro Dalcin #if defined(PETSC_HAVE_MPIIO) 13949566063dSJacob Faibussowitsch PetscCall(PetscViewerFileSetUp_BinaryMPIIO(viewer)); 1395cc843e7aSLisandro Dalcin #endif 1396cc843e7aSLisandro Dalcin } else { 13979566063dSJacob Faibussowitsch PetscCall(PetscViewerFileSetUp_BinarySTDIO(viewer)); 1398cc843e7aSLisandro Dalcin } 13999566063dSJacob Faibussowitsch PetscCall(PetscViewerFileSetUp_BinaryInfo(viewer)); 1400cc843e7aSLisandro Dalcin 14019566063dSJacob Faibussowitsch PetscCall(PetscLogObjectState((PetscObject)viewer, "File: %s", vbinary->filename)); 14025c6c1daeSBarry Smith PetscFunctionReturn(0); 14035c6c1daeSBarry Smith } 14045c6c1daeSBarry Smith 14059371c9d4SSatish Balay static PetscErrorCode PetscViewerView_Binary(PetscViewer v, PetscViewer viewer) { 1406cb6ad94fSLisandro Dalcin PetscViewer_Binary *vbinary = (PetscViewer_Binary *)v->data; 1407cb6ad94fSLisandro Dalcin const char *fname = vbinary->filename ? vbinary->filename : "not yet set"; 1408cc843e7aSLisandro Dalcin const char *fmode = vbinary->filemode != (PetscFileMode)-1 ? PetscFileModes[vbinary->filemode] : "not yet set"; 1409cb6ad94fSLisandro Dalcin PetscBool usempiio; 14102bf49c77SBarry Smith 14112bf49c77SBarry Smith PetscFunctionBegin; 14129566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryGetUseMPIIO(v, &usempiio)); 14139566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Filename: %s\n", fname)); 14149566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Mode: %s (%s)\n", fmode, usempiio ? "mpiio" : "stdio")); 14152bf49c77SBarry Smith PetscFunctionReturn(0); 14162bf49c77SBarry Smith } 14172bf49c77SBarry Smith 14189371c9d4SSatish Balay static PetscErrorCode PetscViewerSetFromOptions_Binary(PetscViewer viewer, PetscOptionItems *PetscOptionsObject) { 141922a8f86cSLisandro Dalcin PetscViewer_Binary *binary = (PetscViewer_Binary *)viewer->data; 1420d22fd6bcSDave May char defaultname[PETSC_MAX_PATH_LEN]; 142103a1d59fSDave May PetscBool flg; 1422e0385b85SDave May 142303a1d59fSDave May PetscFunctionBegin; 142422a8f86cSLisandro Dalcin if (viewer->setupcalled) PetscFunctionReturn(0); 1425d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject, "Binary PetscViewer Options"); 14269566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(defaultname, PETSC_MAX_PATH_LEN - 1, "binaryoutput")); 14279566063dSJacob Faibussowitsch PetscCall(PetscOptionsString("-viewer_binary_filename", "Specify filename", "PetscViewerFileSetName", defaultname, defaultname, sizeof(defaultname), &flg)); 14289566063dSJacob Faibussowitsch if (flg) PetscCall(PetscViewerFileSetName_Binary(viewer, defaultname)); 14299566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-viewer_binary_skip_info", "Skip writing/reading .info file", "PetscViewerBinarySetSkipInfo", binary->skipinfo, &binary->skipinfo, NULL)); 14309566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-viewer_binary_skip_options", "Skip parsing Vec/Mat load options", "PetscViewerBinarySetSkipOptions", binary->skipoptions, &binary->skipoptions, NULL)); 14319566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-viewer_binary_skip_header", "Skip writing/reading header information", "PetscViewerBinarySetSkipHeader", binary->skipheader, &binary->skipheader, NULL)); 143203a1d59fSDave May #if defined(PETSC_HAVE_MPIIO) 14339566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-viewer_binary_mpiio", "Use MPI-IO functionality to write/read binary file", "PetscViewerBinarySetUseMPIIO", binary->usempiio, &binary->usempiio, NULL)); 14345972f5f3SLisandro Dalcin #else 14359566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-viewer_binary_mpiio", "Use MPI-IO functionality to write/read binary file (NOT AVAILABLE)", "PetscViewerBinarySetUseMPIIO", PETSC_FALSE, NULL, NULL)); 143603a1d59fSDave May #endif 1437d0609cedSBarry Smith PetscOptionsHeadEnd(); 1438bc196f7cSDave May binary->setfromoptionscalled = PETSC_TRUE; 143903a1d59fSDave May PetscFunctionReturn(0); 144003a1d59fSDave May } 144103a1d59fSDave May 14428556b5ebSBarry Smith /*MC 14438556b5ebSBarry Smith PETSCVIEWERBINARY - A viewer that saves to binary files 14448556b5ebSBarry Smith 1445c2e3fba1SPatrick Sanan .seealso: `PetscViewerBinaryOpen()`, `PETSC_VIEWER_STDOUT_()`, `PETSC_VIEWER_STDOUT_SELF`, `PETSC_VIEWER_STDOUT_WORLD`, `PetscViewerCreate()`, `PetscViewerASCIIOpen()`, 1446db781477SPatrick Sanan `PetscViewerMatlabOpen()`, `VecView()`, `DMView()`, `PetscViewerMatlabPutArray()`, `PETSCVIEWERASCII`, `PETSCVIEWERMATLAB`, `PETSCVIEWERDRAW`, 1447db781477SPatrick Sanan `PetscViewerFileSetName()`, `PetscViewerFileSetMode()`, `PetscViewerFormat`, `PetscViewerType`, `PetscViewerSetType()`, 1448db781477SPatrick Sanan `PetscViewerBinaryGetUseMPIIO()`, `PetscViewerBinarySetUseMPIIO()` 14498556b5ebSBarry Smith 14501b266c99SBarry Smith Level: beginner 14511b266c99SBarry Smith 14528556b5ebSBarry Smith M*/ 14538556b5ebSBarry Smith 14549371c9d4SSatish Balay PETSC_EXTERN PetscErrorCode PetscViewerCreate_Binary(PetscViewer v) { 14555c6c1daeSBarry Smith PetscViewer_Binary *vbinary; 14565c6c1daeSBarry Smith 14575c6c1daeSBarry Smith PetscFunctionBegin; 14589566063dSJacob Faibussowitsch PetscCall(PetscNewLog(v, &vbinary)); 14595c6c1daeSBarry Smith v->data = (void *)vbinary; 1460cc843e7aSLisandro Dalcin 146103a1d59fSDave May v->ops->setfromoptions = PetscViewerSetFromOptions_Binary; 14625c6c1daeSBarry Smith v->ops->destroy = PetscViewerDestroy_Binary; 14632bf49c77SBarry Smith v->ops->view = PetscViewerView_Binary; 1464c98fd787SBarry Smith v->ops->setup = PetscViewerSetUp_Binary; 1465cc843e7aSLisandro Dalcin v->ops->flush = NULL; /* Should we support Flush() ? */ 1466cc843e7aSLisandro Dalcin v->ops->getsubviewer = PetscViewerGetSubViewer_Binary; 1467cc843e7aSLisandro Dalcin v->ops->restoresubviewer = PetscViewerRestoreSubViewer_Binary; 1468cc843e7aSLisandro Dalcin v->ops->read = PetscViewerBinaryRead; 1469cc843e7aSLisandro Dalcin 1470cc843e7aSLisandro Dalcin vbinary->fdes = -1; 1471e8a65b7dSLisandro Dalcin #if defined(PETSC_HAVE_MPIIO) 1472cc843e7aSLisandro Dalcin vbinary->usempiio = PETSC_FALSE; 1473e8a65b7dSLisandro Dalcin vbinary->mfdes = MPI_FILE_NULL; 1474e8a65b7dSLisandro Dalcin vbinary->mfsub = MPI_FILE_NULL; 1475e8a65b7dSLisandro Dalcin #endif 1476cc843e7aSLisandro Dalcin vbinary->filename = NULL; 14777e4fd573SVaclav Hapla vbinary->filemode = FILE_MODE_UNDEFINED; 147802c9f0b5SLisandro Dalcin vbinary->fdes_info = NULL; 14795c6c1daeSBarry Smith vbinary->skipinfo = PETSC_FALSE; 14805c6c1daeSBarry Smith vbinary->skipoptions = PETSC_TRUE; 14815c6c1daeSBarry Smith vbinary->skipheader = PETSC_FALSE; 14825c6c1daeSBarry Smith vbinary->storecompressed = PETSC_FALSE; 1483f90597f1SStefano Zampini vbinary->ogzfilename = NULL; 14845c6c1daeSBarry Smith vbinary->flowcontrol = 256; /* seems a good number for Cray XT-5 */ 14855c6c1daeSBarry Smith 1486cc843e7aSLisandro Dalcin vbinary->setfromoptionscalled = PETSC_FALSE; 1487cc843e7aSLisandro Dalcin 14889566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinaryGetFlowControl_C", PetscViewerBinaryGetFlowControl_Binary)); 14899566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinarySetFlowControl_C", PetscViewerBinarySetFlowControl_Binary)); 14909566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinaryGetSkipHeader_C", PetscViewerBinaryGetSkipHeader_Binary)); 14919566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinarySetSkipHeader_C", PetscViewerBinarySetSkipHeader_Binary)); 14929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinaryGetSkipOptions_C", PetscViewerBinaryGetSkipOptions_Binary)); 14939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinarySetSkipOptions_C", PetscViewerBinarySetSkipOptions_Binary)); 14949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinaryGetSkipInfo_C", PetscViewerBinaryGetSkipInfo_Binary)); 14959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinarySetSkipInfo_C", PetscViewerBinarySetSkipInfo_Binary)); 14969566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinaryGetInfoPointer_C", PetscViewerBinaryGetInfoPointer_Binary)); 14979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerFileGetName_C", PetscViewerFileGetName_Binary)); 14989566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerFileSetName_C", PetscViewerFileSetName_Binary)); 14999566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerFileGetMode_C", PetscViewerFileGetMode_Binary)); 15009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerFileSetMode_C", PetscViewerFileSetMode_Binary)); 15015c6c1daeSBarry Smith #if defined(PETSC_HAVE_MPIIO) 15029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinaryGetUseMPIIO_C", PetscViewerBinaryGetUseMPIIO_Binary)); 15039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)v, "PetscViewerBinarySetUseMPIIO_C", PetscViewerBinarySetUseMPIIO_Binary)); 15045c6c1daeSBarry Smith #endif 15055c6c1daeSBarry Smith PetscFunctionReturn(0); 15065c6c1daeSBarry Smith } 15075c6c1daeSBarry Smith 15085c6c1daeSBarry Smith /* ---------------------------------------------------------------------*/ 15095c6c1daeSBarry Smith /* 15105c6c1daeSBarry Smith The variable Petsc_Viewer_Binary_keyval is used to indicate an MPI attribute that 15115c6c1daeSBarry Smith is attached to a communicator, in this case the attribute is a PetscViewer. 15125c6c1daeSBarry Smith */ 1513d4c7638eSBarry Smith PetscMPIInt Petsc_Viewer_Binary_keyval = MPI_KEYVAL_INVALID; 15145c6c1daeSBarry Smith 15155c6c1daeSBarry Smith /*@C 15165c6c1daeSBarry Smith PETSC_VIEWER_BINARY_ - Creates a binary PetscViewer shared by all processors 15175c6c1daeSBarry Smith in a communicator. 15185c6c1daeSBarry Smith 1519d083f849SBarry Smith Collective 15205c6c1daeSBarry Smith 15215c6c1daeSBarry Smith Input Parameter: 15225c6c1daeSBarry Smith . comm - the MPI communicator to share the binary PetscViewer 15235c6c1daeSBarry Smith 15245c6c1daeSBarry Smith Level: intermediate 15255c6c1daeSBarry Smith 15265c6c1daeSBarry Smith Options Database Keys: 152710699b91SBarry Smith + -viewer_binary_filename <name> - filename in which to store the binary data, defaults to binaryoutput 152810699b91SBarry Smith . -viewer_binary_skip_info - true means do not create .info file for this viewer 152910699b91SBarry Smith . -viewer_binary_skip_options - true means do not use the options database for this viewer 153010699b91SBarry Smith . -viewer_binary_skip_header - true means do not store the usual header information in the binary file 153110699b91SBarry Smith - -viewer_binary_mpiio - true means use the file via MPI-IO, maybe faster for large files and many MPI ranks 15325c6c1daeSBarry Smith 15335c6c1daeSBarry Smith Environmental variables: 153410699b91SBarry Smith - PETSC_VIEWER_BINARY_FILENAME - filename in which to store the binary data, defaults to binaryoutput 15355c6c1daeSBarry Smith 15365c6c1daeSBarry Smith Notes: 15375c6c1daeSBarry Smith Unlike almost all other PETSc routines, PETSC_VIEWER_BINARY_ does not return 15385c6c1daeSBarry Smith an error code. The binary PetscViewer is usually used in the form 15395c6c1daeSBarry Smith $ XXXView(XXX object,PETSC_VIEWER_BINARY_(comm)); 15405c6c1daeSBarry Smith 1541db781477SPatrick Sanan .seealso: `PETSC_VIEWER_BINARY_WORLD`, `PETSC_VIEWER_BINARY_SELF`, `PetscViewerBinaryOpen()`, `PetscViewerCreate()`, 1542db781477SPatrick Sanan `PetscViewerDestroy()` 15435c6c1daeSBarry Smith @*/ 15449371c9d4SSatish Balay PetscViewer PETSC_VIEWER_BINARY_(MPI_Comm comm) { 15455c6c1daeSBarry Smith PetscErrorCode ierr; 15465c6c1daeSBarry Smith PetscBool flg; 15475c6c1daeSBarry Smith PetscViewer viewer; 15485c6c1daeSBarry Smith char fname[PETSC_MAX_PATH_LEN]; 15495c6c1daeSBarry Smith MPI_Comm ncomm; 15505c6c1daeSBarry Smith 15515c6c1daeSBarry Smith PetscFunctionBegin; 15529371c9d4SSatish Balay ierr = PetscCommDuplicate(comm, &ncomm, NULL); 15539371c9d4SSatish Balay if (ierr) { 15549371c9d4SSatish Balay PetscError(PETSC_COMM_SELF, __LINE__, "PETSC_VIEWER_BINARY_", __FILE__, PETSC_ERR_PLIB, PETSC_ERROR_INITIAL, " "); 15559371c9d4SSatish Balay PetscFunctionReturn(NULL); 15569371c9d4SSatish Balay } 15575c6c1daeSBarry Smith if (Petsc_Viewer_Binary_keyval == MPI_KEYVAL_INVALID) { 155802c9f0b5SLisandro Dalcin ierr = MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN, MPI_COMM_NULL_DELETE_FN, &Petsc_Viewer_Binary_keyval, NULL); 15599371c9d4SSatish Balay if (ierr) { 15609371c9d4SSatish Balay PetscError(PETSC_COMM_SELF, __LINE__, "PETSC_VIEWER_BINARY_", __FILE__, PETSC_ERR_PLIB, PETSC_ERROR_INITIAL, " "); 15619371c9d4SSatish Balay PetscFunctionReturn(NULL); 15629371c9d4SSatish Balay } 15635c6c1daeSBarry Smith } 156447435625SJed Brown ierr = MPI_Comm_get_attr(ncomm, Petsc_Viewer_Binary_keyval, (void **)&viewer, (int *)&flg); 15659371c9d4SSatish Balay if (ierr) { 15669371c9d4SSatish Balay PetscError(PETSC_COMM_SELF, __LINE__, "PETSC_VIEWER_BINARY_", __FILE__, PETSC_ERR_PLIB, PETSC_ERROR_INITIAL, " "); 15679371c9d4SSatish Balay PetscFunctionReturn(NULL); 15689371c9d4SSatish Balay } 15695c6c1daeSBarry Smith if (!flg) { /* PetscViewer not yet created */ 15705c6c1daeSBarry Smith ierr = PetscOptionsGetenv(ncomm, "PETSC_VIEWER_BINARY_FILENAME", fname, PETSC_MAX_PATH_LEN, &flg); 15719371c9d4SSatish Balay if (ierr) { 15729371c9d4SSatish Balay PetscError(PETSC_COMM_SELF, __LINE__, "PETSC_VIEWER_BINARY_", __FILE__, PETSC_ERR_PLIB, PETSC_ERROR_REPEAT, " "); 15739371c9d4SSatish Balay PetscFunctionReturn(NULL); 15749371c9d4SSatish Balay } 15755c6c1daeSBarry Smith if (!flg) { 15765c6c1daeSBarry Smith ierr = PetscStrcpy(fname, "binaryoutput"); 15779371c9d4SSatish Balay if (ierr) { 15789371c9d4SSatish Balay PetscError(PETSC_COMM_SELF, __LINE__, "PETSC_VIEWER_BINARY_", __FILE__, PETSC_ERR_PLIB, PETSC_ERROR_REPEAT, " "); 15799371c9d4SSatish Balay PetscFunctionReturn(NULL); 15809371c9d4SSatish Balay } 15815c6c1daeSBarry Smith } 15825c6c1daeSBarry Smith ierr = PetscViewerBinaryOpen(ncomm, fname, FILE_MODE_WRITE, &viewer); 15839371c9d4SSatish Balay if (ierr) { 15849371c9d4SSatish Balay PetscError(PETSC_COMM_SELF, __LINE__, "PETSC_VIEWER_BINARY_", __FILE__, PETSC_ERR_PLIB, PETSC_ERROR_REPEAT, " "); 15859371c9d4SSatish Balay PetscFunctionReturn(NULL); 15869371c9d4SSatish Balay } 15875c6c1daeSBarry Smith ierr = PetscObjectRegisterDestroy((PetscObject)viewer); 15889371c9d4SSatish Balay if (ierr) { 15899371c9d4SSatish Balay PetscError(PETSC_COMM_SELF, __LINE__, "PETSC_VIEWER_BINARY_", __FILE__, PETSC_ERR_PLIB, PETSC_ERROR_REPEAT, " "); 15909371c9d4SSatish Balay PetscFunctionReturn(NULL); 15919371c9d4SSatish Balay } 159247435625SJed Brown ierr = MPI_Comm_set_attr(ncomm, Petsc_Viewer_Binary_keyval, (void *)viewer); 15939371c9d4SSatish Balay if (ierr) { 15949371c9d4SSatish Balay PetscError(PETSC_COMM_SELF, __LINE__, "PETSC_VIEWER_BINARY_", __FILE__, PETSC_ERR_PLIB, PETSC_ERROR_INITIAL, " "); 15959371c9d4SSatish Balay PetscFunctionReturn(NULL); 15969371c9d4SSatish Balay } 15975c6c1daeSBarry Smith } 15985c6c1daeSBarry Smith ierr = PetscCommDestroy(&ncomm); 15999371c9d4SSatish Balay if (ierr) { 16009371c9d4SSatish Balay PetscError(PETSC_COMM_SELF, __LINE__, "PETSC_VIEWER_BINARY_", __FILE__, PETSC_ERR_PLIB, PETSC_ERROR_REPEAT, " "); 16019371c9d4SSatish Balay PetscFunctionReturn(NULL); 16029371c9d4SSatish Balay } 16035c6c1daeSBarry Smith PetscFunctionReturn(viewer); 16045c6c1daeSBarry Smith } 1605